Query 000054
Match_columns 2548
No_of_seqs 825 out of 3363
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 10:59:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.1E-30 3.8E-35 327.7 35.4 271 2217-2542 104-410 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 1.4E-29 4.9E-34 308.9 36.9 273 2216-2540 50-340 (340)
3 3ow8_A WD repeat-containing pr 100.0 1.5E-29 5E-34 307.8 36.1 268 2222-2542 35-320 (321)
4 2ynn_A Coatomer subunit beta'; 100.0 1.6E-29 5.6E-34 303.7 34.8 279 2214-2544 6-303 (304)
5 4g56_B MGC81050 protein; prote 100.0 1.2E-29 4.2E-34 312.9 30.1 277 2222-2544 45-344 (357)
6 2pbi_B Guanine nucleotide-bind 100.0 1.4E-28 4.6E-33 302.9 37.7 279 2215-2540 58-354 (354)
7 4gqb_B Methylosome protein 50; 100.0 4E-29 1.4E-33 308.1 32.9 241 2222-2546 85-334 (344)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 9E-29 3.1E-33 302.8 35.1 281 2222-2545 19-337 (345)
9 3iz6_a 40S ribosomal protein R 100.0 9.1E-29 3.1E-33 306.7 31.3 289 2215-2545 60-377 (380)
10 4ery_A WD repeat-containing pr 100.0 5E-28 1.7E-32 289.4 34.6 273 2216-2542 18-311 (312)
11 3frx_A Guanine nucleotide-bind 100.0 5.1E-28 1.8E-32 293.0 33.8 291 2214-2544 10-318 (319)
12 2hes_X YDR267CP; beta-propelle 100.0 9.5E-28 3.3E-32 292.0 34.6 279 2222-2543 17-328 (330)
13 1nr0_A Actin interacting prote 100.0 1.7E-27 5.9E-32 314.0 36.7 284 2222-2545 150-569 (611)
14 1erj_A Transcriptional repress 100.0 2.1E-27 7.2E-32 295.8 34.7 281 2222-2544 67-390 (393)
15 4ggc_A P55CDC, cell division c 100.0 1.2E-26 4E-31 275.0 35.9 272 2223-2544 29-316 (318)
16 1nr0_A Actin interacting prote 100.0 4.5E-27 1.5E-31 310.0 35.4 285 2222-2545 21-357 (611)
17 2pm7_B Protein transport prote 100.0 1.8E-26 6.2E-31 276.3 35.5 252 2222-2542 12-284 (297)
18 2xzm_R RACK1; ribosome, transl 100.0 3.8E-27 1.3E-31 287.5 30.0 293 2215-2544 15-341 (343)
19 4aow_A Guanine nucleotide-bind 100.0 1.7E-26 5.7E-31 276.2 34.6 291 2214-2545 31-339 (340)
20 3odt_A Protein DOA1; ubiquitin 100.0 3.5E-26 1.2E-30 269.7 33.0 275 2216-2546 13-299 (313)
21 4gga_A P55CDC, cell division c 100.0 5.8E-26 2E-30 284.7 36.6 271 2222-2543 108-395 (420)
22 4gqb_B Methylosome protein 50; 100.0 1.5E-26 5.3E-31 285.0 30.4 248 2222-2545 33-291 (344)
23 1gxr_A ESG1, transducin-like e 99.9 4.8E-26 1.6E-30 270.9 33.1 269 2222-2541 54-335 (337)
24 2ymu_A WD-40 repeat protein; u 99.9 8.2E-26 2.8E-30 291.8 35.7 259 2222-2540 306-577 (577)
25 4e54_B DNA damage-binding prot 99.9 2.1E-26 7.2E-31 290.3 28.0 280 2222-2547 122-434 (435)
26 3zwl_B Eukaryotic translation 99.9 1.9E-25 6.3E-30 268.7 34.9 270 2222-2545 35-348 (369)
27 2ynn_A Coatomer subunit beta'; 99.9 1.2E-25 4.2E-30 270.0 30.3 231 2270-2545 12-261 (304)
28 3f3f_A Nucleoporin SEH1; struc 99.9 5.8E-25 2E-29 260.3 35.0 267 2222-2545 14-339 (351)
29 4h5i_A Guanine nucleotide-exch 99.9 1.5E-26 5.2E-31 286.4 21.9 282 2222-2545 17-345 (365)
30 3i2n_A WD repeat-containing pr 99.9 3.1E-25 1.1E-29 266.6 32.4 285 2222-2545 21-355 (357)
31 3ei3_B DNA damage-binding prot 99.9 2.5E-25 8.4E-30 273.3 32.2 271 2222-2543 76-382 (383)
32 2pm9_A Protein WEB1, protein t 99.9 5.7E-26 2E-30 279.8 26.6 282 2222-2545 15-339 (416)
33 3bg1_A Protein SEC13 homolog; 99.9 2.5E-26 8.7E-31 277.8 22.8 252 2222-2542 16-292 (316)
34 2ymu_A WD-40 repeat protein; u 99.9 5.8E-25 2E-29 283.9 36.9 263 2222-2544 265-540 (577)
35 3vl1_A 26S proteasome regulato 99.9 1.2E-25 4E-30 278.3 28.4 270 2223-2544 60-366 (420)
36 1r5m_A SIR4-interacting protei 99.9 3.9E-25 1.3E-29 271.1 32.6 279 2222-2543 48-425 (425)
37 1vyh_C Platelet-activating fac 99.9 2.4E-25 8.1E-30 279.4 30.7 232 2269-2545 106-371 (410)
38 1sq9_A Antiviral protein SKI8; 99.9 2.1E-25 7.1E-30 273.6 29.2 290 2222-2544 19-396 (397)
39 3jrp_A Fusion protein of prote 99.9 5.9E-25 2E-29 265.9 32.3 252 2222-2543 14-287 (379)
40 3k26_A Polycomb protein EED; W 99.9 2.1E-25 7E-30 268.5 27.6 276 2222-2543 21-366 (366)
41 4aez_A CDC20, WD repeat-contai 99.9 7.2E-25 2.5E-29 272.7 33.2 273 2220-2545 94-382 (401)
42 3dm0_A Maltose-binding peripla 99.9 2.8E-24 9.6E-29 287.0 40.3 253 2222-2543 433-693 (694)
43 3frx_A Guanine nucleotide-bind 99.9 2.2E-24 7.5E-29 261.2 34.1 226 2222-2486 68-318 (319)
44 3gre_A Serine/threonine-protei 99.9 3.9E-25 1.3E-29 276.4 26.8 288 2222-2540 66-437 (437)
45 1k8k_C P40, ARP2/3 complex 41 99.9 1.9E-24 6.4E-29 261.8 31.1 257 2222-2543 11-274 (372)
46 3mkq_A Coatomer beta'-subunit; 99.9 3.4E-24 1.2E-28 288.2 34.8 277 2216-2544 8-303 (814)
47 3ow8_A WD repeat-containing pr 99.9 2.3E-24 8E-29 262.0 30.0 234 2269-2545 30-281 (321)
48 3sfz_A APAF-1, apoptotic pepti 99.9 6E-24 2E-28 300.2 38.5 271 2222-2543 618-913 (1249)
49 3fm0_A Protein CIAO1; WDR39,SG 99.9 2.7E-24 9.1E-29 263.3 29.9 243 2222-2492 64-342 (345)
50 3dw8_B Serine/threonine-protei 99.9 1.8E-24 6.1E-29 269.5 28.7 261 2222-2545 31-375 (447)
51 1got_B GT-beta; complex (GTP-b 99.9 6.6E-24 2.3E-28 259.0 32.8 234 2270-2545 54-303 (340)
52 2xzm_R RACK1; ribosome, transl 99.9 1.5E-23 5.1E-28 255.8 35.1 229 2222-2486 79-341 (343)
53 3dm0_A Maltose-binding peripla 99.9 5.1E-24 1.7E-28 284.5 33.5 245 2217-2545 378-634 (694)
54 1gxr_A ESG1, transducin-like e 99.9 8.5E-24 2.9E-28 251.5 30.5 275 2221-2545 11-298 (337)
55 2pm9_A Protein WEB1, protein t 99.9 5.6E-25 1.9E-29 271.0 20.8 293 2222-2544 70-415 (416)
56 3mmy_A MRNA export factor; mRN 99.9 1.4E-23 4.6E-28 252.4 31.3 263 2222-2541 42-344 (368)
57 3iz6_a 40S ribosomal protein R 99.9 1.6E-24 5.5E-29 268.6 23.2 262 2243-2545 48-331 (380)
58 2pbi_B Guanine nucleotide-bind 99.9 4.8E-23 1.6E-27 253.6 35.6 226 2222-2482 109-354 (354)
59 3vl1_A 26S proteasome regulato 99.9 7.5E-24 2.6E-28 262.2 28.4 282 2223-2543 101-419 (420)
60 3dwl_C Actin-related protein 2 99.9 1.7E-24 5.8E-29 264.5 22.1 260 2222-2543 14-281 (377)
61 4a11_B DNA excision repair pro 99.9 2.9E-23 9.9E-28 253.6 32.3 284 2222-2545 46-367 (408)
62 1k8k_C P40, ARP2/3 complex 41 99.9 1.7E-23 5.8E-28 253.4 29.4 257 2222-2544 55-362 (372)
63 4ery_A WD repeat-containing pr 99.9 4.5E-23 1.5E-27 246.5 32.1 234 2269-2545 21-270 (312)
64 3v7d_B Cell division control p 99.9 7.4E-23 2.5E-27 257.8 35.2 234 2222-2545 125-383 (464)
65 4g56_B MGC81050 protein; prote 99.9 9.6E-24 3.3E-28 260.4 26.5 267 2224-2545 10-303 (357)
66 3v7d_B Cell division control p 99.9 5.7E-23 2E-27 258.9 33.2 272 2222-2541 165-461 (464)
67 2hes_X YDR267CP; beta-propelle 99.9 2.7E-23 9.2E-28 252.8 29.1 239 2222-2485 61-328 (330)
68 1yfq_A Cell cycle arrest prote 99.9 3.6E-23 1.2E-27 248.0 29.0 259 2222-2535 14-315 (342)
69 2j04_B YDR362CP, TAU91; beta p 99.9 5.9E-24 2E-28 277.0 23.3 242 2228-2544 170-429 (524)
70 1p22_A F-BOX/WD-repeat protein 99.9 5.9E-23 2E-27 258.3 31.2 261 2222-2545 136-416 (435)
71 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.9E-22 6.5E-27 253.8 34.6 262 2222-2545 122-393 (445)
72 2xyi_A Probable histone-bindin 99.9 5.9E-23 2E-27 258.8 29.5 248 2222-2545 131-412 (430)
73 1pgu_A Actin interacting prote 99.9 8.3E-23 2.8E-27 264.2 31.3 280 2222-2544 21-329 (615)
74 2j04_B YDR362CP, TAU91; beta p 99.9 4.1E-23 1.4E-27 269.0 27.6 260 2222-2545 210-519 (524)
75 4aow_A Guanine nucleotide-bind 99.9 2.9E-22 9.8E-27 239.6 32.4 236 2270-2545 37-288 (340)
76 1erj_A Transcriptional repress 99.9 9.9E-23 3.4E-27 253.7 29.3 249 2270-2545 63-343 (393)
77 2oaj_A Protein SNI1; WD40 repe 99.9 1.1E-22 3.9E-27 280.6 32.7 157 2222-2403 61-241 (902)
78 2ovr_B FBW7, F-BOX/WD repeat p 99.9 3.3E-22 1.1E-26 251.6 33.9 263 2222-2544 162-443 (445)
79 3jro_A Fusion protein of prote 99.9 3.7E-23 1.3E-27 279.9 26.3 255 2222-2543 12-285 (753)
80 3dwl_C Actin-related protein 2 99.9 2.5E-23 8.6E-28 254.2 22.4 197 2222-2484 58-280 (377)
81 4a11_B DNA excision repair pro 99.9 1.5E-21 5.2E-26 238.5 37.8 268 2222-2543 102-405 (408)
82 2aq5_A Coronin-1A; WD40 repeat 99.9 4.1E-23 1.4E-27 256.4 23.9 282 2223-2545 38-344 (402)
83 3sfz_A APAF-1, apoptotic pepti 99.9 3.2E-22 1.1E-26 282.6 34.5 271 2222-2545 660-1036(1249)
84 1pgu_A Actin interacting prote 99.9 1.9E-21 6.4E-26 251.6 37.0 270 2222-2544 163-573 (615)
85 2pm7_B Protein transport prote 99.9 5.6E-22 1.9E-26 237.4 29.8 207 2269-2544 7-239 (297)
86 4e54_B DNA damage-binding prot 99.9 9.4E-22 3.2E-26 247.9 32.1 237 2222-2489 167-434 (435)
87 3k26_A Polycomb protein EED; W 99.9 8.4E-22 2.9E-26 237.1 29.6 231 2222-2485 72-366 (366)
88 3ei3_B DNA damage-binding prot 99.9 1.2E-20 3.9E-25 231.9 38.2 232 2222-2485 121-382 (383)
89 3zwl_B Eukaryotic translation 99.9 1.2E-20 4.3E-25 226.7 37.5 241 2222-2492 77-353 (369)
90 3dw8_B Serine/threonine-protei 99.9 1.3E-21 4.5E-26 243.7 29.5 216 2222-2490 96-378 (447)
91 3lrv_A PRE-mRNA-splicing facto 99.9 3.6E-22 1.2E-26 243.3 22.4 238 2227-2544 44-293 (343)
92 4aez_A CDC20, WD repeat-contai 99.9 2E-21 6.9E-26 241.8 29.6 233 2222-2492 137-387 (401)
93 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.4E-21 1.2E-25 243.6 32.1 263 2222-2541 7-337 (450)
94 1r5m_A SIR4-interacting protei 99.9 3.5E-21 1.2E-25 236.0 28.3 260 2242-2545 26-321 (425)
95 4gga_A P55CDC, cell division c 99.9 8.1E-21 2.8E-25 238.1 31.0 234 2222-2491 150-401 (420)
96 4h5i_A Guanine nucleotide-exch 99.9 2.9E-21 1E-25 239.1 26.2 198 2222-2485 136-343 (365)
97 3mkq_A Coatomer beta'-subunit; 99.9 2.3E-20 7.8E-25 251.2 36.9 233 2222-2489 58-306 (814)
98 3bg1_A Protein SEC13 homolog; 99.9 5.6E-22 1.9E-26 239.8 19.0 208 2268-2543 10-247 (316)
99 3f3f_A Nucleoporin SEH1; struc 99.9 3.6E-20 1.2E-24 219.2 33.8 248 2222-2492 60-344 (351)
100 1sq9_A Antiviral protein SKI8; 99.9 6.9E-21 2.4E-25 233.5 28.2 242 2222-2487 65-397 (397)
101 3vu4_A KMHSV2; beta-propeller 99.9 1E-20 3.5E-25 233.0 28.3 243 2222-2544 22-272 (355)
102 3gre_A Serine/threonine-protei 99.9 1E-21 3.6E-26 245.4 19.0 281 2227-2545 35-361 (437)
103 2oaj_A Protein SNI1; WD40 repe 99.9 1.6E-20 5.6E-25 259.1 32.4 259 2222-2541 20-310 (902)
104 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.5E-20 1.2E-24 234.4 32.6 261 2222-2543 105-391 (450)
105 3i2n_A WD repeat-containing pr 99.9 4.8E-21 1.6E-25 230.2 23.3 247 2270-2544 17-292 (357)
106 3odt_A Protein DOA1; ubiquitin 99.9 2.8E-20 9.4E-25 219.4 29.1 227 2270-2545 17-257 (313)
107 1yfq_A Cell cycle arrest prote 99.9 1E-20 3.5E-25 226.7 23.6 244 2269-2545 9-284 (342)
108 3bws_A Protein LP49; two-domai 99.8 9E-20 3.1E-24 227.0 29.3 269 2223-2543 126-432 (433)
109 4gq1_A NUP37; propeller, trans 99.8 9.3E-21 3.2E-25 236.5 20.4 255 2225-2543 95-389 (393)
110 2j04_A TAU60, YPL007P, hypothe 99.8 3.9E-20 1.3E-24 239.4 26.6 238 2222-2542 18-296 (588)
111 4ggc_A P55CDC, cell division c 99.8 1.2E-19 4E-24 214.9 28.7 230 2222-2487 70-317 (318)
112 3jrp_A Fusion protein of prote 99.8 5.7E-20 2E-24 222.2 26.0 211 2269-2544 9-241 (379)
113 1l0q_A Surface layer protein; 99.8 3.6E-19 1.2E-23 218.5 33.1 255 2232-2545 3-277 (391)
114 3lrv_A PRE-mRNA-splicing facto 99.8 6.6E-20 2.3E-24 223.4 24.2 232 2223-2544 80-334 (343)
115 3mmy_A MRNA export factor; mRN 99.8 9E-20 3.1E-24 219.2 24.3 244 2269-2545 37-306 (368)
116 2aq5_A Coronin-1A; WD40 repeat 99.8 8.9E-20 3E-24 226.5 23.5 231 2222-2489 84-346 (402)
117 2w18_A PALB2, fancn, partner a 99.8 5.7E-19 1.9E-23 217.0 29.4 249 2220-2542 40-356 (356)
118 3vu4_A KMHSV2; beta-propeller 99.8 3.7E-19 1.3E-23 219.1 27.9 245 2223-2544 62-337 (355)
119 2xyi_A Probable histone-bindin 99.8 3E-19 1E-23 225.1 26.1 212 2269-2543 126-353 (430)
120 1p22_A F-BOX/WD-repeat protein 99.8 7.6E-19 2.6E-23 221.0 28.5 222 2270-2544 132-366 (435)
121 4gq1_A NUP37; propeller, trans 99.8 2.4E-19 8.2E-24 223.8 18.5 239 2274-2546 92-351 (393)
122 3jro_A Fusion protein of prote 99.8 1.8E-18 6E-23 234.3 24.1 212 2268-2544 6-239 (753)
123 1l0q_A Surface layer protein; 99.8 3.9E-17 1.3E-21 200.5 32.8 233 2222-2493 34-283 (391)
124 2j04_A TAU60, YPL007P, hypothe 99.8 7.6E-19 2.6E-23 227.4 16.7 199 2222-2484 88-296 (588)
125 2w18_A PALB2, fancn, partner a 99.8 4.5E-18 1.5E-22 209.1 22.6 194 2222-2483 114-355 (356)
126 3bws_A Protein LP49; two-domai 99.7 2.1E-16 7.2E-21 196.7 28.3 232 2272-2545 123-392 (433)
127 1nir_A Nitrite reductase; hemo 99.7 2.2E-15 7.4E-20 197.3 27.1 263 2227-2545 145-460 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 99.7 9.8E-15 3.3E-19 184.2 31.2 223 2231-2545 143-389 (415)
129 1nir_A Nitrite reductase; hemo 99.7 1.2E-14 4.2E-19 190.2 29.8 286 2222-2546 181-517 (543)
130 1pby_B Quinohemoprotein amine 99.6 3.1E-14 1.1E-18 169.5 30.3 263 2232-2545 2-312 (337)
131 3u4y_A Uncharacterized protein 99.6 3.4E-14 1.2E-18 170.3 29.2 274 2227-2545 5-306 (331)
132 1ri6_A Putative isomerase YBHE 99.6 1.7E-14 5.9E-19 172.2 26.1 260 2233-2542 7-307 (343)
133 2ojh_A Uncharacterized protein 99.6 2.6E-14 8.7E-19 165.7 23.9 230 2222-2534 44-293 (297)
134 2ecf_A Dipeptidyl peptidase IV 99.6 1.2E-14 4.2E-19 194.4 23.5 245 2222-2542 39-366 (741)
135 3vgz_A Uncharacterized protein 99.6 1.2E-13 4.2E-18 166.2 29.9 248 2222-2545 43-305 (353)
136 2hqs_A Protein TOLB; TOLB, PAL 99.6 1.4E-13 4.6E-18 173.8 31.1 212 2222-2525 181-408 (415)
137 1jmx_B Amine dehydrogenase; ox 99.6 5.9E-14 2E-18 168.3 26.4 274 2225-2545 5-327 (349)
138 2ojh_A Uncharacterized protein 99.6 7.8E-14 2.7E-18 161.7 26.6 225 2236-2546 17-261 (297)
139 1xfd_A DIP, dipeptidyl aminope 99.6 1.8E-14 6.3E-19 192.0 20.7 268 2223-2544 20-346 (723)
140 2z3z_A Dipeptidyl aminopeptida 99.6 2E-13 7E-18 181.9 30.4 278 2222-2545 84-437 (706)
141 2ecf_A Dipeptidyl peptidase IV 99.6 1.4E-13 4.9E-18 184.1 26.2 277 2222-2545 111-461 (741)
142 2oit_A Nucleoporin 214KDA; NH2 99.5 7E-14 2.4E-18 178.0 20.2 212 2272-2544 37-279 (434)
143 3o4h_A Acylamino-acid-releasin 99.5 1.1E-13 3.7E-18 180.8 21.6 233 2221-2541 23-274 (582)
144 3hfq_A Uncharacterized protein 99.5 9.3E-13 3.2E-17 159.7 27.8 253 2223-2546 43-322 (347)
145 2oit_A Nucleoporin 214KDA; NH2 99.5 1E-13 3.6E-18 176.4 18.7 216 2222-2486 39-279 (434)
146 3vgz_A Uncharacterized protein 99.5 1.4E-11 4.6E-16 148.3 31.8 225 2223-2526 92-325 (353)
147 3scy_A Hypothetical bacterial 99.5 2.8E-11 9.4E-16 147.9 34.8 249 2223-2545 53-341 (361)
148 1ri6_A Putative isomerase YBHE 99.5 3.6E-12 1.2E-16 152.1 25.0 242 2222-2488 40-313 (343)
149 1xfd_A DIP, dipeptidyl aminope 99.5 9.5E-13 3.2E-17 175.5 21.3 249 2222-2543 63-393 (723)
150 1k32_A Tricorn protease; prote 99.5 2.4E-12 8.1E-17 180.4 26.2 259 2222-2545 298-639 (1045)
151 3u4y_A Uncharacterized protein 99.4 6.3E-12 2.2E-16 150.6 25.1 229 2224-2488 44-307 (331)
152 2z3z_A Dipeptidyl aminopeptida 99.4 2.9E-12 9.8E-17 170.8 23.2 273 2224-2545 30-393 (706)
153 1k32_A Tricorn protease; prote 99.4 3E-12 1E-16 179.3 23.0 236 2223-2542 248-501 (1045)
154 1jof_A Carboxy-CIS,CIS-muconat 99.4 1E-11 3.5E-16 153.1 24.8 254 2223-2545 43-343 (365)
155 4a5s_A Dipeptidyl peptidase 4 99.4 6.6E-12 2.3E-16 169.6 23.6 272 2223-2545 20-355 (740)
156 1z68_A Fibroblast activation p 99.4 1.5E-12 5.1E-17 174.1 17.0 271 2223-2545 19-348 (719)
157 3hfq_A Uncharacterized protein 99.4 7.3E-11 2.5E-15 143.1 27.5 218 2223-2490 89-324 (347)
158 1q7f_A NHL, brain tumor CG1071 99.3 6E-10 2.1E-14 131.6 32.3 242 2222-2544 32-281 (286)
159 3fvz_A Peptidyl-glycine alpha- 99.3 2.7E-10 9.3E-15 138.7 30.0 251 2222-2544 26-323 (329)
160 1pby_B Quinohemoprotein amine 99.3 3.5E-11 1.2E-15 143.2 20.8 198 2223-2493 85-318 (337)
161 3pe7_A Oligogalacturonate lyas 99.3 6.7E-11 2.3E-15 145.0 23.0 276 2225-2542 41-381 (388)
162 1z68_A Fibroblast activation p 99.3 4.7E-11 1.6E-15 159.7 22.5 283 2222-2545 62-445 (719)
163 2oiz_A Aromatic amine dehydrog 99.3 9.9E-10 3.4E-14 136.3 31.2 260 2239-2544 29-335 (361)
164 1jmx_B Amine dehydrogenase; ox 99.3 1.4E-10 4.7E-15 139.1 21.7 238 2223-2493 46-333 (349)
165 3o4h_A Acylamino-acid-releasin 99.3 4.9E-11 1.7E-15 155.8 19.0 224 2222-2543 67-315 (582)
166 3scy_A Hypothetical bacterial 99.2 1.4E-09 4.9E-14 132.7 27.3 239 2233-2542 15-290 (361)
167 2xdw_A Prolyl endopeptidase; a 99.1 7.8E-09 2.7E-13 139.0 28.8 244 2221-2545 126-416 (710)
168 2oiz_A Aromatic amine dehydrog 99.1 4.5E-09 1.5E-13 130.4 23.8 213 2224-2492 54-343 (361)
169 1jof_A Carboxy-CIS,CIS-muconat 99.1 1.6E-08 5.5E-13 124.7 28.3 251 2233-2545 4-294 (365)
170 3azo_A Aminopeptidase; POP fam 99.1 3.8E-09 1.3E-13 139.8 23.9 244 2222-2544 26-326 (662)
171 3azo_A Aminopeptidase; POP fam 99.1 5.3E-09 1.8E-13 138.4 24.0 247 2228-2545 87-371 (662)
172 3c5m_A Oligogalacturonate lyas 99.0 3.4E-09 1.2E-13 129.6 18.8 243 2223-2546 39-332 (396)
173 3e5z_A Putative gluconolactona 99.0 6.6E-08 2.3E-12 115.0 28.7 242 2222-2546 30-289 (296)
174 1rwi_B Serine/threonine-protei 99.0 2.8E-08 9.4E-13 115.7 24.9 236 2222-2545 26-266 (270)
175 2bkl_A Prolyl endopeptidase; m 99.0 5E-09 1.7E-13 140.6 20.9 243 2221-2546 122-400 (695)
176 4a5s_A Dipeptidyl peptidase 4 99.0 1E-08 3.5E-13 138.6 23.5 212 2223-2490 65-358 (740)
177 2gop_A Trilobed protease; beta 99.0 3.5E-08 1.2E-12 119.2 25.7 220 2222-2542 61-330 (347)
178 2dg1_A DRP35, lactonase; beta 98.9 5E-07 1.7E-11 108.8 33.0 242 2222-2533 47-300 (333)
179 3pe7_A Oligogalacturonate lyas 98.9 4.2E-08 1.4E-12 120.2 22.5 215 2245-2546 14-276 (388)
180 2z2n_A Virginiamycin B lyase; 98.9 1.9E-06 6.4E-11 101.1 34.5 267 2222-2545 17-297 (299)
181 2gop_A Trilobed protease; beta 98.9 9.1E-08 3.1E-12 115.6 23.9 221 2222-2544 17-292 (347)
182 2mad_H Methylamine dehydrogena 98.9 7.9E-07 2.7E-11 111.3 32.2 268 2229-2545 30-352 (373)
183 3c5m_A Oligogalacturonate lyas 98.9 2.7E-08 9.1E-13 121.6 18.5 192 2225-2488 86-332 (396)
184 1q7f_A NHL, brain tumor CG1071 98.9 1.8E-07 6.3E-12 110.3 24.6 196 2222-2486 79-281 (286)
185 1yr2_A Prolyl oligopeptidase; 98.8 1.2E-07 3.9E-12 128.5 25.0 246 2221-2546 164-444 (741)
186 3no2_A Uncharacterized protein 98.8 2.9E-07 9.9E-12 110.4 24.5 190 2230-2493 4-203 (276)
187 3fvz_A Peptidyl-glycine alpha- 98.8 2.4E-07 8.3E-12 112.8 24.2 211 2271-2545 23-279 (329)
188 2dg1_A DRP35, lactonase; beta 98.8 8.6E-08 2.9E-12 115.5 19.5 238 2223-2544 9-264 (333)
189 3sjl_D Methylamine dehydrogena 98.8 7E-07 2.4E-11 112.3 28.0 272 2228-2545 41-365 (386)
190 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 1.1E-06 3.9E-11 104.3 28.2 247 2223-2544 21-300 (314)
191 3dsm_A Uncharacterized protein 98.8 4.1E-07 1.4E-11 111.1 24.8 239 2223-2543 47-302 (328)
192 1qks_A Cytochrome CD1 nitrite 98.8 1.2E-06 4.2E-11 115.5 31.0 234 2229-2543 165-421 (567)
193 2bkl_A Prolyl endopeptidase; m 98.7 6.4E-07 2.2E-11 120.3 24.3 237 2229-2542 77-348 (695)
194 1qks_A Cytochrome CD1 nitrite 98.6 5.1E-06 1.8E-10 109.6 30.4 245 2222-2493 199-546 (567)
195 2xdw_A Prolyl endopeptidase; a 98.6 1.6E-06 5.6E-11 116.5 24.3 206 2223-2487 174-416 (710)
196 3iuj_A Prolyl endopeptidase; h 98.6 1.7E-06 5.7E-11 116.5 24.0 243 2221-2546 130-408 (693)
197 2qc5_A Streptogramin B lactona 98.6 2.6E-05 8.8E-10 91.4 31.1 233 2222-2542 22-259 (300)
198 3c75_H MADH, methylamine dehyd 98.6 4.2E-06 1.4E-10 106.7 26.0 270 2229-2545 82-404 (426)
199 3g4e_A Regucalcin; six bladed 98.6 1.6E-05 5.6E-10 95.2 29.1 234 2222-2532 15-262 (297)
200 1rwi_B Serine/threonine-protei 98.5 4.1E-06 1.4E-10 97.4 22.7 196 2223-2487 70-266 (270)
201 3hrp_A Uncharacterized protein 98.5 1.5E-05 5E-10 101.0 29.1 263 2222-2542 133-409 (409)
202 1xip_A Nucleoporin NUP159; bet 98.5 1.2E-06 4.1E-11 110.3 17.1 178 2221-2472 39-231 (388)
203 3e5z_A Putative gluconolactona 98.5 3.9E-06 1.3E-10 99.8 20.2 198 2222-2488 71-289 (296)
204 2z2n_A Virginiamycin B lyase; 98.4 6.3E-05 2.1E-09 88.1 28.6 225 2271-2542 14-254 (299)
205 3dsm_A Uncharacterized protein 98.4 1.1E-05 3.7E-10 98.5 22.8 206 2222-2493 86-309 (328)
206 2qc5_A Streptogramin B lactona 98.4 0.00012 4.1E-09 85.7 30.7 232 2222-2542 64-299 (300)
207 3no2_A Uncharacterized protein 98.4 7.3E-06 2.5E-10 98.3 19.6 187 2282-2545 4-197 (276)
208 1yr2_A Prolyl oligopeptidase; 98.4 1.7E-05 5.8E-10 107.4 24.4 235 2229-2542 116-392 (741)
209 1xip_A Nucleoporin NUP159; bet 98.3 9.1E-06 3.1E-10 102.4 19.8 178 2272-2526 38-225 (388)
210 2ghs_A AGR_C_1268P; regucalcin 98.3 0.00012 4.2E-09 89.1 28.6 230 2223-2533 52-293 (326)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 98.3 4.4E-05 1.5E-09 90.6 23.4 199 2222-2485 73-299 (314)
212 1mda_H Methylamine dehydrogena 98.3 2.4E-05 8.3E-10 98.0 21.2 257 2233-2545 34-348 (368)
213 2mad_H Methylamine dehydrogena 98.2 0.00015 5.1E-09 90.8 27.5 79 2224-2306 70-160 (373)
214 2qe8_A Uncharacterized protein 98.2 7.3E-05 2.5E-09 91.7 24.0 249 2222-2532 19-310 (343)
215 2hz6_A Endoplasmic reticulum t 98.2 6E-07 2E-11 111.9 4.4 189 2230-2492 8-199 (369)
216 3dr2_A Exported gluconolactona 98.2 0.00019 6.4E-09 86.3 25.0 232 2222-2537 47-301 (305)
217 3g4e_A Regucalcin; six bladed 98.2 0.0002 6.8E-09 85.8 25.0 191 2222-2474 56-261 (297)
218 3sjl_D Methylamine dehydrogena 98.1 0.00032 1.1E-08 88.4 25.0 203 2223-2493 140-371 (386)
219 3q7m_A Lipoprotein YFGL, BAMB; 98.0 0.0017 5.7E-08 80.0 29.5 269 2231-2546 53-340 (376)
220 3hrp_A Uncharacterized protein 98.0 0.00027 9.3E-09 89.4 22.4 210 2271-2545 130-356 (409)
221 3c75_H MADH, methylamine dehyd 97.9 0.00011 3.7E-09 93.8 17.9 216 2224-2492 122-409 (426)
222 2ghs_A AGR_C_1268P; regucalcin 97.9 0.0011 3.9E-08 80.6 24.9 189 2222-2474 92-291 (326)
223 1mda_H Methylamine dehydrogena 97.9 0.00011 3.8E-09 92.1 15.9 76 2224-2302 69-158 (368)
224 2hz6_A Endoplasmic reticulum t 97.8 3E-06 1E-10 105.6 0.6 181 2282-2546 8-195 (369)
225 1kb0_A Quinohemoprotein alcoho 97.8 0.0011 3.9E-08 89.2 24.6 270 2231-2546 128-510 (677)
226 1yiq_A Quinohemoprotein alcoho 97.7 0.0035 1.2E-07 84.7 28.3 166 2231-2414 121-345 (689)
227 3q7m_A Lipoprotein YFGL, BAMB; 97.7 0.005 1.7E-07 75.7 26.3 256 2230-2540 102-375 (376)
228 3iuj_A Prolyl endopeptidase; h 97.7 0.0014 4.8E-08 88.2 22.7 202 2223-2488 178-408 (693)
229 1kb0_A Quinohemoprotein alcoho 97.6 0.0019 6.5E-08 87.1 22.7 118 2240-2362 189-353 (677)
230 2ece_A 462AA long hypothetical 97.5 0.0066 2.3E-07 77.6 24.7 222 2229-2492 93-362 (462)
231 1yiq_A Quinohemoprotein alcoho 97.5 0.0035 1.2E-07 84.6 23.0 116 2239-2359 181-342 (689)
232 3dr2_A Exported gluconolactona 97.4 0.0017 5.8E-08 77.9 16.8 192 2272-2544 45-268 (305)
233 2qe8_A Uncharacterized protein 97.4 0.0063 2.1E-07 74.5 21.4 210 2222-2482 69-318 (343)
234 2iwa_A Glutamine cyclotransfer 97.4 0.011 3.7E-07 71.0 22.3 212 2273-2544 22-238 (266)
235 2iwa_A Glutamine cyclotransfer 97.3 0.01 3.5E-07 71.2 21.7 207 2222-2486 23-238 (266)
236 3hxj_A Pyrrolo-quinoline quino 97.3 0.011 3.7E-07 70.5 21.2 218 2231-2544 107-325 (330)
237 2fp8_A Strictosidine synthase; 97.1 0.048 1.6E-06 65.8 25.2 255 2223-2544 22-314 (322)
238 1npe_A Nidogen, entactin; glyc 97.1 0.25 8.7E-06 57.7 30.6 227 2232-2545 2-240 (267)
239 4a2l_A BT_4663, two-component 97.1 0.32 1.1E-05 66.4 36.0 283 2221-2545 264-573 (795)
240 1fwx_A Nitrous oxide reductase 97.1 0.0052 1.8E-07 80.8 17.3 213 2229-2493 99-379 (595)
241 2ece_A 462AA long hypothetical 97.1 0.0085 2.9E-07 76.6 18.5 170 2222-2414 140-362 (462)
242 3nol_A Glutamine cyclotransfer 97.0 0.038 1.3E-06 66.1 22.3 192 2222-2474 45-244 (262)
243 1npe_A Nidogen, entactin; glyc 97.0 0.25 8.5E-06 57.8 28.6 205 2222-2492 38-245 (267)
244 4a2l_A BT_4663, two-component 97.0 0.27 9.4E-06 67.0 33.1 275 2223-2544 176-481 (795)
245 1kv9_A Type II quinohemoprotei 96.9 0.037 1.3E-06 74.5 22.8 163 2231-2412 117-338 (668)
246 2xe4_A Oligopeptidase B; hydro 96.8 0.049 1.7E-06 74.2 23.1 155 2221-2401 175-351 (751)
247 3nol_A Glutamine cyclotransfer 96.8 0.052 1.8E-06 64.9 20.3 195 2272-2531 43-244 (262)
248 3hxj_A Pyrrolo-quinoline quino 96.7 0.0082 2.8E-07 71.5 13.4 246 2229-2542 29-283 (330)
249 1fwx_A Nitrous oxide reductase 96.7 0.057 2E-06 71.2 22.1 252 2234-2543 18-361 (595)
250 1kv9_A Type II quinohemoprotei 96.7 0.048 1.6E-06 73.4 22.1 73 2231-2306 66-140 (668)
251 1k3i_A Galactose oxidase precu 96.7 0.02 6.7E-07 76.7 17.9 117 2225-2353 191-323 (656)
252 3nok_A Glutaminyl cyclase; bet 96.6 0.084 2.9E-06 63.3 20.5 156 2222-2414 57-217 (268)
253 3mbr_X Glutamine cyclotransfer 96.5 0.24 8.2E-06 58.7 23.3 156 2222-2414 23-186 (243)
254 3mbr_X Glutamine cyclotransfer 96.4 0.16 5.5E-06 60.2 21.0 198 2272-2532 21-224 (243)
255 3nok_A Glutaminyl cyclase; bet 96.4 0.061 2.1E-06 64.5 17.3 197 2272-2531 55-254 (268)
256 2ad6_A Methanol dehydrogenase 96.2 0.32 1.1E-05 64.3 24.9 69 2231-2306 115-189 (571)
257 2p4o_A Hypothetical protein; p 96.1 0.76 2.6E-05 55.1 25.1 202 2222-2489 34-245 (306)
258 2fp8_A Strictosidine synthase; 96.0 0.45 1.6E-05 57.3 23.0 202 2222-2485 82-313 (322)
259 3v9f_A Two-component system se 96.0 1.5 5.1E-05 59.7 30.5 285 2221-2544 259-569 (781)
260 1flg_A Protein (quinoprotein e 96.0 1.1 3.6E-05 59.6 28.0 73 2231-2306 117-197 (582)
261 3qqz_A Putative uncharacterize 95.9 2.2 7.6E-05 50.8 27.6 212 2222-2483 29-251 (255)
262 3qqz_A Putative uncharacterize 95.9 1.2 3.9E-05 53.3 24.9 209 2272-2541 27-251 (255)
263 2ad6_A Methanol dehydrogenase 95.8 0.3 1E-05 64.6 21.6 30 2464-2493 473-502 (571)
264 1w6s_A Methanol dehydrogenase 95.8 0.44 1.5E-05 63.4 23.1 159 2233-2414 123-349 (599)
265 1k3i_A Galactose oxidase precu 95.7 0.17 5.9E-06 67.7 19.1 72 2224-2304 247-325 (656)
266 3v9f_A Two-component system se 95.6 3.1 0.00011 56.6 30.9 283 2222-2544 213-525 (781)
267 3v65_B Low-density lipoprotein 95.5 5 0.00017 50.2 30.2 228 2232-2544 88-319 (386)
268 2p4o_A Hypothetical protein; p 95.2 2.1 7.1E-05 51.3 24.5 160 2222-2401 74-239 (306)
269 3tc9_A Hypothetical hydrolase; 95.1 4.4 0.00015 51.5 28.0 151 2223-2402 140-299 (430)
270 2xe4_A Oligopeptidase B; hydro 95.0 0.93 3.2E-05 61.8 23.0 114 2273-2402 175-302 (751)
271 3v64_C Agrin; beta propeller, 95.0 9.8 0.00034 46.8 32.8 227 2232-2544 45-276 (349)
272 1w6s_A Methanol dehydrogenase 95.0 1.5 5.1E-05 58.4 24.1 29 2465-2493 483-511 (599)
273 1flg_A Protein (quinoprotein e 95.0 1.6 5.5E-05 57.8 24.4 29 2465-2493 496-524 (582)
274 1ijq_A LDL receptor, low-densi 94.9 9.1 0.00031 46.2 32.7 227 2233-2544 3-239 (316)
275 3v65_B Low-density lipoprotein 94.3 3.2 0.00011 51.8 23.8 204 2222-2492 118-325 (386)
276 3v64_C Agrin; beta propeller, 94.3 5.5 0.00019 49.0 25.5 154 2222-2402 75-232 (349)
277 3p5b_L Low density lipoprotein 94.0 17 0.0006 45.5 31.4 232 2232-2544 84-321 (400)
278 1ijq_A LDL receptor, low-densi 93.7 9.8 0.00034 46.0 25.7 208 2222-2492 32-245 (316)
279 4hw6_A Hypothetical protein, I 93.5 12 0.0004 47.7 27.0 260 2223-2542 142-432 (433)
280 3p5b_L Low density lipoprotein 93.1 13 0.00044 46.7 26.2 207 2222-2492 114-327 (400)
281 3kya_A Putative phosphatase; s 93.0 23 0.00079 46.1 28.7 279 2223-2544 142-476 (496)
282 3m0c_C LDL receptor, low-densi 92.9 31 0.0011 47.4 31.3 183 2240-2487 403-591 (791)
283 3sov_A LRP-6, low-density lipo 92.2 14 0.00047 45.1 24.1 205 2222-2492 37-245 (318)
284 2xbg_A YCF48-like protein; pho 92.1 22 0.00076 43.0 25.8 233 2222-2540 82-319 (327)
285 3a9g_A Putative uncharacterize 92.1 11 0.00039 46.5 23.5 109 2222-2338 31-153 (354)
286 2ism_A Putative oxidoreductase 92.0 12 0.00042 46.0 23.7 109 2222-2338 33-153 (352)
287 3sov_A LRP-6, low-density lipo 91.7 30 0.001 42.1 29.8 222 2240-2545 12-240 (318)
288 3amr_A 3-phytase; beta-propell 91.0 28 0.00096 43.4 24.9 203 2230-2493 39-272 (355)
289 2g8s_A Glucose/sorbosone dehyd 91.0 36 0.0012 41.9 26.3 113 2222-2338 20-148 (353)
290 2xbg_A YCF48-like protein; pho 89.4 44 0.0015 40.4 30.3 240 2222-2544 38-279 (327)
291 2vpj_A Kelch-like protein 12; 89.4 13 0.00046 43.8 19.9 148 2230-2402 14-182 (301)
292 2xn4_A Kelch-like protein 2; s 89.2 17 0.00059 42.9 20.7 106 2231-2353 16-133 (302)
293 3amr_A 3-phytase; beta-propell 89.1 18 0.00062 45.1 21.0 192 2282-2542 39-262 (355)
294 2xzh_A Clathrin heavy chain 1; 88.6 56 0.0019 40.6 27.9 207 2228-2492 75-297 (365)
295 1n7d_A LDL receptor, low-densi 88.3 3.3 0.00011 56.1 15.1 222 2240-2544 385-615 (699)
296 2p9w_A MAL S 1 allergenic prot 88.1 5 0.00017 49.6 15.0 162 2275-2485 16-215 (334)
297 3m0c_C LDL receptor, low-densi 87.6 45 0.0016 45.8 25.6 155 2222-2402 426-587 (791)
298 3ei3_A DNA damage-binding prot 87.5 26 0.00089 50.2 23.9 175 2242-2485 808-999 (1158)
299 1bpo_A Protein (clathrin); cla 86.7 84 0.0029 40.5 27.5 208 2227-2492 73-296 (494)
300 3pbp_A Nucleoporin NUP82; beta 86.2 22 0.00076 45.4 19.5 167 2324-2538 25-207 (452)
301 2p9w_A MAL S 1 allergenic prot 86.2 14 0.00047 45.8 17.4 164 2223-2403 16-214 (334)
302 3tc9_A Hypothetical hydrolase; 86.0 11 0.00038 47.8 17.2 116 2272-2402 137-255 (430)
303 4hw6_A Hypothetical protein, I 85.4 38 0.0013 43.1 21.7 161 2272-2484 139-303 (433)
304 4asc_A Kelch repeat and BTB do 85.0 64 0.0022 38.3 22.5 103 2234-2353 8-126 (315)
305 1bpo_A Protein (clathrin); cla 84.8 94 0.0032 40.0 24.0 129 2239-2402 46-186 (494)
306 1n7d_A LDL receptor, low-densi 84.5 2.4 8.3E-05 57.4 10.7 207 2223-2493 409-622 (699)
307 3pbp_A Nucleoporin NUP82; beta 84.1 21 0.00073 45.5 18.0 156 2281-2480 30-207 (452)
308 2xn4_A Kelch-like protein 2; s 84.0 13 0.00043 44.1 15.5 148 2230-2402 61-227 (302)
309 4a0p_A LRP6, LRP-6, low-densit 83.9 1.3E+02 0.0044 40.2 31.7 226 2233-2544 8-238 (628)
310 3ii7_A Kelch-like protein 7; p 83.8 13 0.00044 44.1 15.6 109 2230-2354 55-179 (306)
311 2vpj_A Kelch-like protein 12; 83.7 14 0.00049 43.5 15.8 148 2230-2402 62-229 (301)
312 3ii7_A Kelch-like protein 7; p 83.5 34 0.0012 40.4 19.1 106 2232-2353 13-127 (306)
313 4a0p_A LRP6, LRP-6, low-densit 82.7 1.1E+02 0.0039 40.7 25.5 155 2222-2403 39-196 (628)
314 3s94_A LRP-6, low-density lipo 81.1 72 0.0025 42.5 22.6 156 2222-2402 42-200 (619)
315 3mkq_B Coatomer subunit alpha; 77.9 4.3 0.00015 45.9 7.9 87 1244-1363 43-129 (177)
316 1zgk_A Kelch-like ECH-associat 77.8 53 0.0018 38.9 18.1 148 2230-2402 24-191 (308)
317 3sre_A PON1, serum paraoxonase 77.8 1.5E+02 0.005 36.9 23.4 161 2224-2403 54-251 (355)
318 3sre_A PON1, serum paraoxonase 74.6 44 0.0015 41.6 16.5 30 2456-2485 222-252 (355)
319 2woz_A Kelch repeat and BTB do 74.2 1.4E+02 0.0046 35.5 20.4 103 2234-2353 19-136 (318)
320 1zgk_A Kelch-like ECH-associat 72.2 42 0.0014 39.9 15.2 148 2230-2402 70-238 (308)
321 4asc_A Kelch repeat and BTB do 70.9 33 0.0011 40.8 13.9 149 2229-2402 44-219 (315)
322 1xi4_A Clathrin heavy chain; a 67.8 1.5E+02 0.005 43.5 20.6 208 2228-2490 74-294 (1630)
323 2woz_A Kelch repeat and BTB do 65.4 76 0.0026 37.7 15.5 110 2229-2354 55-185 (318)
324 1xi4_A Clathrin heavy chain; a 65.2 93 0.0032 45.3 18.0 130 2238-2402 45-186 (1630)
325 3ei3_A DNA damage-binding prot 61.0 5.5E+02 0.019 36.8 28.6 71 2222-2301 556-635 (1158)
326 1cru_A Protein (soluble quinop 59.1 1.9E+02 0.0063 37.0 18.2 115 2222-2338 29-162 (454)
327 2zwa_A Leucine carboxyl methyl 58.8 1.7E+02 0.0058 39.4 18.7 160 2229-2402 396-575 (695)
328 3kya_A Putative phosphatase; s 58.6 4.1E+02 0.014 34.6 24.8 118 2222-2352 188-340 (496)
329 1cru_A Protein (soluble quinop 56.6 3.7E+02 0.013 34.3 20.4 49 2326-2377 33-87 (454)
330 2uvk_A YJHT; unknown function, 54.6 76 0.0026 38.3 13.0 28 2465-2492 316-349 (357)
331 4gq2_M Nucleoporin NUP120; bet 49.9 2E+02 0.0069 40.3 17.6 39 2455-2493 236-274 (950)
332 3das_A Putative oxidoreductase 46.6 5E+02 0.017 32.1 25.5 113 2222-2338 34-158 (347)
333 2zwa_A Leucine carboxyl methyl 44.3 2.4E+02 0.0082 38.0 16.5 111 2282-2402 397-520 (695)
334 3s94_A LRP-6, low-density lipo 41.9 7.5E+02 0.026 32.7 31.6 188 2233-2485 319-510 (619)
335 2xzh_A Clathrin heavy chain 1; 40.9 6.3E+02 0.021 31.6 24.1 150 2240-2414 125-297 (365)
336 2ism_A Putative oxidoreductase 40.7 5.8E+02 0.02 31.0 22.3 64 2223-2290 78-153 (352)
337 3bg1_B Nucleoporin NUP145; NPC 37.3 46 0.0016 42.7 7.4 40 1321-1361 176-215 (442)
338 3das_A Putative oxidoreductase 35.8 2.8E+02 0.0095 34.4 13.9 134 2326-2472 38-219 (347)
339 2uvk_A YJHT; unknown function, 34.7 3.2E+02 0.011 32.7 14.2 42 2345-2395 286-327 (357)
340 3ott_A Two-component system se 34.3 9.9E+02 0.034 31.9 33.0 281 2221-2544 233-546 (758)
341 4gq2_M Nucleoporin NUP120; bet 34.2 3.1E+02 0.011 38.5 15.5 36 2272-2307 236-271 (950)
342 1tl2_A L10, protein (tachylect 32.7 3.9E+02 0.013 31.6 13.3 101 2223-2337 44-152 (236)
343 1tl2_A L10, protein (tachylect 31.1 1.6E+02 0.0054 34.7 9.8 103 2424-2542 42-162 (236)
344 2wg3_C Hedgehog-interacting pr 27.0 3.5E+02 0.012 34.7 13.2 117 2222-2338 16-157 (463)
345 2be1_A Serine/threonine-protei 26.3 1.5E+02 0.005 36.8 9.0 184 2283-2489 10-235 (339)
346 3a9g_A Putative uncharacterize 24.7 1E+03 0.035 29.0 24.0 20 2454-2473 311-330 (354)
347 4fhn_B Nucleoporin NUP120; pro 21.0 1.5E+02 0.0052 42.4 8.8 38 2456-2493 239-276 (1139)
348 3sbq_A Nitrous-oxide reductase 20.2 5.4E+02 0.018 34.3 12.6 118 2224-2353 327-478 (638)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.98 E-value=1.1e-30 Score=327.71 Aligned_cols=271 Identities=18% Similarity=0.252 Sum_probs=227.3
Q ss_pred cCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc
Q 000054 2217 VENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2548)
Q Consensus 2217 l~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt 2294 (2548)
+.+|. |.+++|+|+++++++|+.||+|+|||+.+++....+.. |.+.|++++|+|++++|++|+.||+
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~----------h~~~V~~v~~~~~~~~l~sgs~D~~ 173 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG----------HTDSVQDISFDHSGKLLASCSADMT 173 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC----------CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec----------cCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 34443 79999999999999999999999999999988877643 5689999999999999999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
|++||+.+++.. ..+.+|...|.+ |+|+++++++++ .|++|++||+++ +.++..+.+|...|.++
T Consensus 174 i~iwd~~~~~~~--------~~~~~h~~~V~~v~~~p~~~~l~s~s---~D~~i~~wd~~~--~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 174 IKLWDFQGFECI--------RTMHGHDHNVSSVSIMPNGDHIVSAS---RDKTIKMWEVQT--GYCVKTFTGHREWVRMV 240 (410)
T ss_dssp CCEEETTSSCEE--------ECCCCCSSCEEEEEECSSSSEEEEEE---TTSEEEEEETTT--CCEEEEEECCSSCEEEE
T ss_pred EEEEeCCCCcee--------EEEcCCCCCEEEEEEeCCCCEEEEEe---CCCeEEEEECCC--CcEEEEEeCCCccEEEE
Confidence 999999876533 346788888875 899999999986 899999999986 67888999999999999
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC-------------------
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT------------------- 2433 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd------------------- 2433 (2548)
.++|+ +.++++|+.||+|++||+ .++++...+... ......+.|+|+
T Consensus 241 ~~~~~-------g~~l~s~s~D~~v~vwd~---~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (410)
T 1vyh_C 241 RPNQD-------GTLIASCSNDQTVRVWVV---ATKECKAELREH----RHVVECISWAPESSYSSISEATGSETKKSGK 306 (410)
T ss_dssp EECTT-------SSEEEEEETTSCEEEEET---TTCCEEEEECCC----SSCEEEEEECCSCGGGGGGGCCSCC------
T ss_pred EECCC-------CCEEEEEcCCCeEEEEEC---CCCceeeEecCC----CceEEEEEEcCcccccchhhhccccccccCC
Confidence 99998 789999999999999994 456666555211 122344556654
Q ss_pred -CCC--ccCCCCCceEEEcc--------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccc
Q 000054 2434 -GSG--SKPGDQNGMLWYIP--------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFL 2502 (2548)
Q Consensus 2434 -Gk~--v~s~D~sv~Iwdi~--------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl 2502 (2548)
|.+ .++.|+.+++||+. .+|.+.|++++|+|+|++|++|+.||+|++||+.+++++.++
T Consensus 307 ~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~---------- 376 (410)
T 1vyh_C 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL---------- 376 (410)
T ss_dssp -CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE----------
T ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE----------
Confidence 333 56778899999953 479999999999999999999999999999999999888766
Q ss_pred cCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECC
Q 000054 2503 QPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2503 ~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
.+|.+. |++++|+|++ |+|||.||+|++|+++
T Consensus 377 ----~~h~~~----v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 377 ----NAHEHF----VTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ----ECCSSC----EEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred ----cCCCCc----EEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 567643 5778999999 9999999999999863
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=1.4e-29 Score=308.88 Aligned_cols=273 Identities=16% Similarity=0.232 Sum_probs=226.2
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
++.+|. |.+++|+|++++|++|+.||+|++||..+++.+..+.. |...|.+++|+|+++++++|+.||
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~s~~~d~ 119 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL----------RSSWVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC----------SSSCEEEEEECTTSSEEEEEETTC
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec----------CCccEEEEEECCCCCEEEEEeCCC
Confidence 444554 79999999999999999999999999999988877643 458899999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.|++|++.++... ......+.+|...|.+ +++++. +++++ .|++|++||+.+ ++.+..+.+|.+.|.+
T Consensus 120 ~v~iw~~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s---~d~~i~~wd~~~--~~~~~~~~~h~~~v~~ 189 (340)
T 1got_B 120 ICSIYNLKTREGN----VRVSRELAGHTGYLSCCRFLDDNQ-IVTSS---GDTTCALWDIET--GQQTTTFTGHTGDVMS 189 (340)
T ss_dssp EEEEEETTTCSBS----CEEEEEEECCSSCEEEEEEEETTE-EEEEE---TTSCEEEEETTT--TEEEEEECCCSSCEEE
T ss_pred eEEEEECccCCCc----ceeEEEecCCCccEEEEEECCCCc-EEEEE---CCCcEEEEECCC--CcEEEEEcCCCCceEE
Confidence 9999999865321 1123446788888874 666665 66765 899999999986 6778889999999999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI 2449 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi 2449 (2548)
++|+|+ +.++++|+.||+|++||+ .+++++..+.. .......+.|+|+|.+ +++.|+.+++|++
T Consensus 190 ~~~~~~-------~~~l~sg~~d~~v~~wd~---~~~~~~~~~~~----h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~ 255 (340)
T 1got_B 190 LSLAPD-------TRLFVSGACDASAKLWDV---REGMCRQTFTG----HESDINAICFFPNGNAFATGSDDATCRLFDL 255 (340)
T ss_dssp EEECTT-------SSEEEEEETTSCEEEEET---TTCSEEEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEECCC-------CCEEEEEeCCCcEEEEEC---CCCeeEEEEcC----CcCCEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 999998 789999999999999995 45677666521 1223567889999987 6778899999996
Q ss_pred cc----------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEE
Q 000054 2450 PK----------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2450 ~~----------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
.. .+...|++++|+|+|++|++|+.||.|++||+.+++.+.++ .+|.+. |.+
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~--------------~~h~~~----v~~ 317 (340)
T 1got_B 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--------------AGHDNR----VSC 317 (340)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--------------ECCSSC----EEE
T ss_pred CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe--------------ecCCCc----EEE
Confidence 42 23357999999999999999999999999999999988766 677754 567
Q ss_pred EEEcCCe--EEEEECCCcEEEEE
Q 000054 2520 IQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2520 LafSPdG--LaSGS~DGtIrIWD 2540 (2548)
++|+|+| |+|||.||+|++||
T Consensus 318 ~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 318 LGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcCCCCEEEEEcCCccEEecC
Confidence 7999999 99999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=307.79 Aligned_cols=268 Identities=17% Similarity=0.245 Sum_probs=222.1
Q ss_pred EEEEEEcCC----CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHPL----RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPd----G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrV 2297 (2548)
|.+++|+|+ +.+|++|+.|++|+|||+.+++...... + .+|...|.+++|++++..+++|+.||+|++
T Consensus 35 V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~-l-------~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l 106 (321)
T 3ow8_A 35 IWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWS-L-------EGHQLGVVSVDISHTLPIAASSSLDAHIRL 106 (321)
T ss_dssp EEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEE-E-------CCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred EEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeee-e-------ccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 699999874 6799999999999999998776433321 2 236689999999999999999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
||+++++... .+..|...+ .+|+|+++++++++ .|+.|++||++. .+....+..|...|.+++|+
T Consensus 107 Wd~~~~~~~~--------~~~~~~~~~~~~~~spdg~~l~~g~---~dg~v~i~~~~~--~~~~~~~~~~~~~v~~~~~s 173 (321)
T 3ow8_A 107 WDLENGKQIK--------SIDAGPVDAWTLAFSPDSQYLATGT---HVGKVNIFGVES--GKKEYSLDTRGKFILSIAYS 173 (321)
T ss_dssp EETTTTEEEE--------EEECCTTCCCCEEECTTSSEEEEEC---TTSEEEEEETTT--CSEEEEEECSSSCEEEEEEC
T ss_pred EECCCCCEEE--------EEeCCCccEEEEEECCCCCEEEEEc---CCCcEEEEEcCC--CceeEEecCCCceEEEEEEC
Confidence 9999876432 244455444 35999999999986 899999999986 56777888899999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc----
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI---- 2449 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi---- 2449 (2548)
|+ +++|++|+.||.|++|| +.+++.+..+.. .......+.|+|++++ .++.|+.+++|++
T Consensus 174 pd-------g~~lasg~~dg~i~iwd---~~~~~~~~~~~~----h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 174 PD-------GKYLASGAIDGIINIFD---IATGKLLHTLEG----HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp TT-------SSEEEEEETTSCEEEEE---TTTTEEEEEECC----CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred CC-------CCEEEEEcCCCeEEEEE---CCCCcEEEEEcc----cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence 98 78999999999999999 556777766621 1223456889999987 6678889999985
Q ss_pred ----ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCC
Q 000054 2450 ----PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR 2525 (2548)
Q Consensus 2450 ----~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd 2525 (2548)
+.+|...|.+++|+|++++|++|+.||+|++||+++++++.++ .+|.+. |++++|+|+
T Consensus 240 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~--------------~~h~~~----v~~v~~s~~ 301 (321)
T 3ow8_A 240 LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF--------------FDHQDQ----VWGVKYNGN 301 (321)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--------------CCCSSC----EEEEEECTT
T ss_pred eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE--------------cCCCCc----EEEEEECCC
Confidence 3579999999999999999999999999999999999999877 567643 567799999
Q ss_pred e--EEEEECCCcEEEEECC
Q 000054 2526 G--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2526 G--LaSGS~DGtIrIWDL~ 2542 (2548)
| |++++.||+|++||.+
T Consensus 302 g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 302 GSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEeCCCeEEEEeCC
Confidence 9 9999999999999974
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=1.6e-29 Score=303.67 Aligned_cols=279 Identities=14% Similarity=0.212 Sum_probs=221.4
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000054 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
..++.+|. |.+++|+|++++|++|+.||+|++||+.+++.+..+.. |...|.+++|+|++++|++|+.
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~s~s~ 75 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV----------TETPVRAGKFIARKNWIIVGSD 75 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC----------CSSCEEEEEEEGGGTEEEEEET
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec----------cCCcEEEEEEeCCCCEEEEECC
Confidence 33455554 89999999999999999999999999999988877753 4588999999999999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
||+|++||+++++.. ..+.+|...|.+ ++|+++++++|+ .|++|++||++.. ......+.+|...|
T Consensus 76 d~~i~vwd~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~l~sgs---~D~~v~lWd~~~~-~~~~~~~~~h~~~v 143 (304)
T 2ynn_A 76 DFRIRVFNYNTGEKV--------VDFEAHPDYIRSIAVHPTKPYVLSGS---DDLTVKLWNWENN-WALEQTFEGHEHFV 143 (304)
T ss_dssp TSEEEEEETTTCCEE--------EEEECCSSCEEEEEECSSSSEEEEEE---TTSCEEEEEGGGT-TEEEEEECCCCSCE
T ss_pred CCEEEEEECCCCcEE--------EEEeCCCCcEEEEEEcCCCCEEEEEC---CCCeEEEEECCCC-cchhhhhcccCCcE
Confidence 999999999987643 347789888874 899999999986 8999999999752 34567788999999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCC--CCCC--ccCCCCCce
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ--TGSG--SKPGDQNGM 2445 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp--dGk~--v~s~D~sv~ 2445 (2548)
.+++|+|.+ +..|++|+.||+|++||++. +.....+... .......+.+.+ ++.+ .++.|+.++
T Consensus 144 ~~v~~~p~~------~~~l~sgs~D~~v~iwd~~~---~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 144 MCVAFNPKD------PSTFASGCLDRTVKVWSLGQ---STPNFTLTTG---QERGVNYVDYYPLPDKPYMITASDDLTIK 211 (304)
T ss_dssp EEEEECTTC------TTEEEEEETTSEEEEEETTC---SSCSEEEECC---CTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred EEEEECCCC------CCEEEEEeCCCeEEEEECCC---CCccceeccC---CcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence 999999964 77999999999999999653 3333222111 111123344444 5555 678899999
Q ss_pred EEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2446 LWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2446 Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
+|++ +.+|...|.+++|+|++++|++|+.||+|++||+++++++.++ .+|.+. +
T Consensus 212 iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~--------------~~~~~~----~ 273 (304)
T 2ynn_A 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL--------------NVGLER----S 273 (304)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE--------------CCSSSS----E
T ss_pred EEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec--------------cCCCcc----E
Confidence 9995 3579999999999999999999999999999999999999877 445433 4
Q ss_pred EEEEEcCCe---EEEEECCCcEEEEECCCC
Q 000054 2518 TDIQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2518 tsLafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
++++++|++ +++++.|..+.+|++.+.
T Consensus 274 ~~~~~~~~~~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 274 WCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp EEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred EEEEECCCCCceEEEEecCCceEEEEeccC
Confidence 677999987 344445556778888654
No 5
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=1.2e-29 Score=312.91 Aligned_cols=277 Identities=16% Similarity=0.161 Sum_probs=210.4
Q ss_pred EEEEEEcCCCCEEEEEEC------CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 000054 2222 TRAFSSHPLRPFFLVGSS------NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~------DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtV 2295 (2548)
|.+++|+|||++|++|+. |+.|++|+..++.....+.. ....|...|++++|+|++. +++++.||+|
T Consensus 45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~------~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT------AGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS------EEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec------ccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 799999999999999997 77899999877654322211 1123568899999999976 6678899999
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
++||+.+++..... .....+|...|.+ |+|++++|++++ .|+.|++||+++ ++.+..+.+|.+.|++++
T Consensus 118 ~lWd~~~~~~~~~~----~~~~~~h~~~V~~v~~spdg~~l~sgs---~dg~v~iwd~~~--~~~~~~~~~h~~~v~~v~ 188 (357)
T 4g56_B 118 ELWEILEKESLLVN----KFAKYEHDDIVKTLSVFSDGTQAVSGG---KDFSVKVWDLSQ--KAVLKSYNAHSSEVNCVA 188 (357)
T ss_dssp EEC--------CCC----CEEECCCSSCEEEEEECSSSSEEEEEE---TTSCEEEEETTT--TEEEEEECCCSSCEEEEE
T ss_pred EEeeccccceeEEE----eeccCCCCCCEEEEEECCCCCEEEEEe---CCCeEEEEECCC--CcEEEEEcCCCCCEEEEE
Confidence 99999887643221 1235578888875 899999999997 899999999986 678889999999999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCC-C--ccCCCCCceEEEc-
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGS-G--SKPGDQNGMLWYI- 2449 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk-~--v~s~D~sv~Iwdi- 2449 (2548)
|++++ ..++++++.||+|++||++ +++....+. ..........++|+|++. + ++..++.+++|++
T Consensus 189 ~s~~~------~~~~~s~~~dg~v~~wd~~---~~~~~~~~~--~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 189 ACPGK------DTIFLSCGEDGRILLWDTR---KPKPATRID--FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257 (357)
T ss_dssp ECTTC------SSCEEEEETTSCEEECCTT---SSSCBCBCC--CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred EccCC------CceeeeeccCCceEEEECC---CCceeeeee--eccccccccchhhhhcccceEEEeecccceeEEECC
Confidence 99984 4589999999999999954 455444331 111223345678898854 3 4577889999985
Q ss_pred -------ccCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEE
Q 000054 2450 -------PKAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2450 -------~~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa 2521 (2548)
+.+|...|++++|+|++ ++|++|+.||+|+|||+++++++..+ +|.+. |++++
T Consensus 258 ~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---------------~H~~~----V~~va 318 (357)
T 4g56_B 258 NPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---------------SHRDF----VTGVA 318 (357)
T ss_dssp CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---------------CCSSC----EEEEE
T ss_pred CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---------------CCCCC----EEEEE
Confidence 35799999999999987 68999999999999999999887633 57644 57789
Q ss_pred EcC-Ce--EEEEECCCcEEEEECCCC
Q 000054 2522 VVS-RG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2522 fSP-dG--LaSGS~DGtIrIWDL~sg 2544 (2548)
|+| ++ |+|||.||+|++|++++.
T Consensus 319 fsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 319 WSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 998 56 899999999999999754
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=1.4e-28 Score=302.94 Aligned_cols=279 Identities=15% Similarity=0.204 Sum_probs=230.0
Q ss_pred CccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2215 ATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
..+.+|. |.+++|+|++++|++|+.||+|++||..+++....+.. |...|.+++|+|+|..+++|+.|
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~----------~~~~v~~~~~sp~g~~lasg~~d 127 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM----------PCTWVMACAYAPSGCAIACGGLD 127 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC----------SSSCCCEEEECTTSSEEEEESTT
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec----------CCCCEEEEEECCCCCEEEEeeCC
Confidence 3455555 89999999999999999999999999999887777643 34789999999999999999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
+.+++|++........ ......+.+|...|.+ |++++..+++++ .|++|++||+++ ++.+..+.+|...|.
T Consensus 128 ~~i~v~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s---~D~~v~lwd~~~--~~~~~~~~~h~~~v~ 200 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENM--AAKKKSVAMHTNYLSACSFTNSDMQILTAS---GDGTCALWDVES--GQLLQSFHGHGADVL 200 (354)
T ss_dssp SEEEEEECCCCTTCCS--GGGCEEEEECSSCEEEEEECSSSSEEEEEE---TTSEEEEEETTT--CCEEEEEECCSSCEE
T ss_pred CCEEEEEEeccccccc--cccceeeeccCCcEEEEEEeCCCCEEEEEe---CCCcEEEEeCCC--CeEEEEEcCCCCCeE
Confidence 9999999975432111 1223446678888764 899999999986 899999999986 678889999999999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEE
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWY 2448 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwd 2448 (2548)
++.++|.. .+.+|++|+.||+|++||+ .+++++..+.. .......+.++|++.. +++.|+.+++|+
T Consensus 201 ~~~~~~~~-----~g~~l~sgs~Dg~v~~wd~---~~~~~~~~~~~----h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd 268 (354)
T 2pbi_B 201 CLDLAPSE-----TGNTFVSGGCDKKAMVWDM---RSGQCVQAFET----HESDVNSVRYYPSGDAFASGSDDATCRLYD 268 (354)
T ss_dssp EEEECCCS-----SCCEEEEEETTSCEEEEET---TTCCEEEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEeCC-----CCCEEEEEeCCCeEEEEEC---CCCcEEEEecC----CCCCeEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 99998862 2679999999999999994 56777766521 1223567889999887 677899999999
Q ss_pred ccc----------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEE
Q 000054 2449 IPK----------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVT 2518 (2548)
Q Consensus 2449 i~~----------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vt 2518 (2548)
+.. .+...+.+++|+|+|++|++|+.||+|++||+.+++.+..+ .+|.+. |+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l--------------~~h~~~----v~ 330 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL--------------FGHENR----VS 330 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE--------------CCCSSC----EE
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE--------------ECCCCc----EE
Confidence 632 23457899999999999999999999999999999988766 677754 56
Q ss_pred EEEEcCCe--EEEEECCCcEEEEE
Q 000054 2519 DIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2519 sLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
+++|+|+| |++|+.||+|++|+
T Consensus 331 ~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 331 TLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCCEEEEEcCCCCEEecC
Confidence 77999999 99999999999996
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=4e-29 Score=308.06 Aligned_cols=241 Identities=17% Similarity=0.197 Sum_probs=196.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+|++ .+++|+.||+|+|||+.+++.....+. ...+|.+.|++++|+|+|++|++|+.||+|++||++
T Consensus 85 v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~------~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 85 VADLTWVGER-GILVASDSGAVELWELDENETLIVSKF------CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEE------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeec------cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 5899999985 688999999999999999887655432 112466999999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceeee--ccCCCeEEEEEcc
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASIT--CHEGGARSISVFD 2376 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~--gHs~~VtSLafsP 2376 (2548)
+++.+ ..+.+|...|.+ |++++. ++++++ .|++|++||+++ .++...+. .|...+.+++|+|
T Consensus 158 ~~~~~--------~~~~~h~~~V~~~~~~~~~~~~l~s~s---~D~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~p 224 (344)
T 4gqb_B 158 QQVVL--------SSYRAHAAQVTCVAASPHKDSVFLSCS---EDNRILLWDTRC--PKPASQIGCSAPGYLPTSLAWHP 224 (344)
T ss_dssp TTEEE--------EEECCCSSCEEEEEECSSCTTEEEEEE---TTSCEEEEETTS--SSCEEECC----CCCEEEEEECS
T ss_pred CCcEE--------EEEcCcCCceEEEEecCCCCCceeeec---cccccccccccc--cceeeeeecceeeccceeeeecC
Confidence 87543 347889998875 888874 778875 899999999987 45555543 5667899999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCC
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS 2456 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~ 2456 (2548)
.+ +.++++|+.||+|++||+ .+++++..+ .+|...
T Consensus 225 ~~------~~~l~sg~~dg~v~~wd~---~~~~~~~~~------------------------------------~~h~~~ 259 (344)
T 4gqb_B 225 QQ------SEVFVFGDENGTVSLVDT---KSTSCVLSS------------------------------------AVHSQC 259 (344)
T ss_dssp SC------TTEEEEEETTSEEEEEES---CC--CCEEE------------------------------------ECCSSC
T ss_pred CC------CcceEEeccCCcEEEEEC---CCCcEEEEE------------------------------------cCCCCC
Confidence 85 789999999999999994 456666665 789999
Q ss_pred EEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEEC
Q 000054 2457 VTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGG 2532 (2548)
Q Consensus 2457 VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~ 2532 (2548)
|++++|+|++ ++|++|+.||+|+|||+++++++. +.+|.+. |++++|+|++ |+|||.
T Consensus 260 v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~---------------~~~H~~~----V~~v~~sp~~~~llas~s~ 320 (344)
T 4gqb_B 260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR---------------SQAHRDF----VRDATWSPLNHSLLTTVGW 320 (344)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE---------------ECCCSSC----EEEEEECSSSTTEEEEEET
T ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE---------------EcCCCCC----EEEEEEeCCCCeEEEEEcC
Confidence 9999999998 689999999999999999988653 2678754 5677999998 669999
Q ss_pred CCcEEEEECCCCcc
Q 000054 2533 DGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2533 DGtIrIWDL~sg~l 2546 (2548)
||+|++|+++++.+
T Consensus 321 D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 321 DHQVVHHVVPTEPL 334 (344)
T ss_dssp TSCEEEEECCC---
T ss_pred CCeEEEEECCCCCC
Confidence 99999999987643
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=9e-29 Score=302.83 Aligned_cols=281 Identities=14% Similarity=0.215 Sum_probs=220.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+|++||+|+.|++|+|||+.++......... .+|.+.|++++|+|++++|++|+.||+|++||+.
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~-------~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~ 91 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-------EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN 91 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEEC-------SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeec-------cccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc
Confidence 689999999999999999999999999887654333222 2466999999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCC-CcceeeeccCCCeEEEEEccCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPT-SSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~-k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
.+... ....+.+|...|.+ |+|++++|++++ .|++|++||++.... .++..+.+|...|.+++|+|+
T Consensus 92 ~~~~~------~~~~~~~h~~~v~~v~~sp~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~- 161 (345)
T 3fm0_A 92 QDDFE------CVTTLEGHENEVKSVAWAPSGNLLATCS---RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS- 161 (345)
T ss_dssp CC-EE------EEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS-
T ss_pred CCCeE------EEEEccCCCCCceEEEEeCCCCEEEEEE---CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC-
Confidence 65321 22457889988874 899999999996 899999999975322 346678899999999999998
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCc--eeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEccc---
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGK--TKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIPK--- 2451 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk--~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~~--- 2451 (2548)
+.+|++|+.||+|++||++ +++ +...+. .+ ......++|+|+|++ +++.|+.+++|+...
T Consensus 162 ------~~~l~s~s~d~~i~~w~~~---~~~~~~~~~~~---~h-~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~ 228 (345)
T 3fm0_A 162 ------QELLASASYDDTVKLYREE---EDDWVCCATLE---GH-ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGN 228 (345)
T ss_dssp ------SSCEEEEETTSCEEEEEEE---TTEEEEEEEEC---CC-SSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTC
T ss_pred ------CCEEEEEeCCCcEEEEEec---CCCEEEEEEec---CC-CCceEEEEECCCCCEEEEEeCCCeEEEeccccCCC
Confidence 7899999999999999953 343 223331 11 223567889999987 677899999998521
Q ss_pred ---------------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcE----EEEecccccccccccCcc
Q 000054 2452 ---------------------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQL----VYHWSKLHERHTFLQPSS 2506 (2548)
Q Consensus 2452 ---------------------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgel----l~tL~~~Hs~hsfl~~tl 2506 (2548)
.|...|++++|+|++..|++++.|+.|++|+...+.. ...+ .....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~---------~~~~~ 299 (345)
T 3fm0_A 229 EQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL---------TAHLH 299 (345)
T ss_dssp TTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE---------EEEET
T ss_pred CccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE---------Eeeec
Confidence 2888999999999999999999999999999875431 1111 00113
Q ss_pred cCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCCc
Q 000054 2507 RGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2507 ~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+. |++++|+|++ |+|||.||+|++|++.++.
T Consensus 300 ~~h~~~----V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 300 QAHSQD----VNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp TSSSSC----EEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred ccccCc----EeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 577754 5777999986 8899999999999998764
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=9.1e-29 Score=306.72 Aligned_cols=289 Identities=16% Similarity=0.257 Sum_probs=227.9
Q ss_pred CccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2215 ATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.++.+|. |.+++|+|++++|++|+.||+|+|||..+++....+.. |...|.+++|+|+|++|++|+.|
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~----------h~~~v~~~~~s~~g~~las~~~d 129 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL----------HCPWVMECAFAPNGQSVACGGLD 129 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC----------CCTTCCCCEECTTSSEEEECCSS
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec----------CCCCEEEEEECCCCCEEEEeeCC
Confidence 3455555 89999999999999999999999999999988887753 45889999999999999999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcceee-----ec
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-----TC 2364 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-----~g 2364 (2548)
+.|++||+.+..... ........+.+|...|.+ +.|+ +..+++|+ .|++|++||+++ ++.+..+ .+
T Consensus 130 ~~v~iw~~~~~~~~~-~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s---~D~~i~~wd~~~--~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 130 SACSIFNLSSQADRD-GNMPVSRVLTGHKGYASSCQYVPDQETRLITGS---GDQTCVLWDVTT--GQRISIFGSEFPSG 203 (380)
T ss_dssp SCCEEEECCCCSSCC-CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEEC---TTSCEEEECTTT--CCEEEEECCCSSSS
T ss_pred CcEEEEECCCCcccc-CCccceeeccCCCcceEEEEEecCCCCEEEEEC---CCCcEEEEEcCC--CcEEEEeecccCCC
Confidence 999999997543111 111223457788887763 6665 45788875 899999999986 5555555 57
Q ss_pred cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCC
Q 000054 2365 HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQ 2442 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~ 2442 (2548)
|...|.++.+++.+ +.++++|+.||+|++||++. .++.+..+.. .......+.|+|+|.. .++.|+
T Consensus 204 h~~~v~~~~~~~~~------~~~l~sgs~D~~v~~wd~~~--~~~~~~~~~~----h~~~v~~v~~~p~~~~l~s~s~D~ 271 (380)
T 3iz6_a 204 HTADVLSLSINSLN------ANMFISGSCDTTVRLWDLRI--TSRAVRTYHG----HEGDINSVKFFPDGQRFGTGSDDG 271 (380)
T ss_dssp CCSCEEEEEECSSS------CCEEEEEETTSCEEEEETTT--TCCCCEEECC----CSSCCCEEEECTTSSEEEEECSSS
T ss_pred CccCeEEEEeecCC------CCEEEEEECCCeEEEEECCC--CCcceEEECC----cCCCeEEEEEecCCCeEEEEcCCC
Confidence 99999999998864 78999999999999999763 2344444421 1223557889999987 678889
Q ss_pred CceEEEcccC---------------CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCccc
Q 000054 2443 NGMLWYIPKA---------------HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2443 sv~Iwdi~~g---------------H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~ 2507 (2548)
.+++||+..+ +...|++++|+|+|++|++|+.||.|++||+.+++.+..+.. ...
T Consensus 272 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~----------~~~ 341 (380)
T 3iz6_a 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT----------LQN 341 (380)
T ss_dssp CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC----------SCS
T ss_pred eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec----------ccC
Confidence 9999996432 123489999999999999999999999999999998876621 125
Q ss_pred CCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2508 GFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+|.+. |++++|+|+| |+|||.||+|++|++.+..
T Consensus 342 ~h~~~----v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 342 SHEGR----ISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCCCC----CCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCc----eEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 67654 4677999999 8999999999999998763
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.96 E-value=5e-28 Score=289.40 Aligned_cols=273 Identities=18% Similarity=0.243 Sum_probs=223.1
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
++.+|. |.+++|+|++++|++|+.||.|++|+..+++....+.. |...|.+++|+|++++|++|+.||
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~l~s~~~d~ 87 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG----------HKLGISDVAWSSDSNLLVSASDDK 87 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc----------CCCceEEEEEcCCCCEEEEECCCC
Confidence 344443 79999999999999999999999999999887777632 558899999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.|++||+++++.. ..+.+|...|.+ ++|+++++++++ .|+.|++||++. .+.+..+..|...|.+
T Consensus 88 ~i~vwd~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~s~~---~d~~i~iwd~~~--~~~~~~~~~~~~~v~~ 154 (312)
T 4ery_A 88 TLKIWDVSSGKCL--------KTLKGHSNYVFCCNFNPQSNLIVSGS---FDESVRIWDVKT--GKCLKTLPAHSDPVSA 154 (312)
T ss_dssp EEEEEETTTCCEE--------EEEECCSSCEEEEEECSSSSEEEEEE---TTSCEEEEETTT--CCEEEEECCCSSCEEE
T ss_pred EEEEEECCCCcEE--------EEEcCCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEECCC--CEEEEEecCCCCcEEE
Confidence 9999999987533 346778888764 899999999987 899999999986 6778889999999999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI 2449 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi 2449 (2548)
+.|+|+ +.++++|+.||.|++||+ .+++.+..+.. ........+.++|++++ +++.++.+++|++
T Consensus 155 ~~~~~~-------~~~l~~~~~d~~i~~wd~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 155 VHFNRD-------GSLIVSSSYDGLCRIWDT---ASGQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp EEECTT-------SSEEEEEETTSCEEEEET---TTCCEEEEECC---SSCCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred EEEcCC-------CCEEEEEeCCCcEEEEEC---CCCceeeEEec---cCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 999998 789999999999999995 45666655421 12233456789999987 6677889999996
Q ss_pred c--------cCCCCCEE---EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEE
Q 000054 2450 P--------KAHLGSVT---RISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVT 2518 (2548)
Q Consensus 2450 ~--------~gH~~~Vt---sLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vt 2518 (2548)
. .+|...+. .....+++.+|++|+.||.|++||+.+++.+.++ .+|.+. |.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--------------~~h~~~----v~ 283 (312)
T 4ery_A 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL--------------QGHTDV----VI 283 (312)
T ss_dssp TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE--------------CCCSSC----EE
T ss_pred CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh--------------hccCCc----EE
Confidence 3 34554332 2233467899999999999999999999998876 677654 56
Q ss_pred EEEEcCCe--EEEEE--CCCcEEEEECC
Q 000054 2519 DIQVVSRG--FLSCG--GDGSVKLIQLE 2542 (2548)
Q Consensus 2519 sLafSPdG--LaSGS--~DGtIrIWDL~ 2542 (2548)
+++|+|++ +++++ .||+|++|+.+
T Consensus 284 ~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 284 STACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEeecCcCCceEEEEccCCccEEEecCC
Confidence 77999999 77776 69999999975
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.96 E-value=5.1e-28 Score=292.96 Aligned_cols=291 Identities=16% Similarity=0.212 Sum_probs=223.3
Q ss_pred CCccCCeE--EEEEEEcCCC-CEEEEEECCCeEEEEEcCCCce--eEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE
Q 000054 2214 PATVENIS--TRAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKA--TATYGVLPAANVPPPYALASISALQFDHYGHRFAS 2288 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG-~~LASGS~DGsVrLWDl~tg~~--l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS 2288 (2548)
..++.+|. |.+++|+|++ ++|++|+.|++|++||+..... ...+..+. +|...|++++|+|++++|++
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-------GHSHIVQDCTLTADGAYALS 82 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-------CCSSCEEEEEECTTSSEEEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-------CCcccEEEEEECCCCCEEEE
Confidence 33455665 7999999965 8999999999999999874321 11122222 35689999999999999999
Q ss_pred EeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC
Q 000054 2289 AALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2289 GS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
|+.||+|++||+++++.. ..+.+|...|.+ ++|++.++++++ .|++|++||++ ..++..+.+|.
T Consensus 83 ~s~D~~v~~wd~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~l~s~s---~D~~i~vwd~~---~~~~~~~~~h~ 148 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETY--------QRFVGHKSDVMSVDIDKKASMIISGS---RDKTIKVWTIK---GQCLATLLGHN 148 (319)
T ss_dssp EETTSEEEEEETTTTEEE--------EEEECCSSCEEEEEECTTSCEEEEEE---TTSCEEEEETT---SCEEEEECCCS
T ss_pred EeCCCEEEEEECCCCCee--------EEEccCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEECC---CCeEEEEeccC
Confidence 999999999999987532 347789988875 899999999986 89999999996 46788888999
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCc
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNG 2444 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv 2444 (2548)
..|.++.+.|.. .....+..+++|+.||.|++||++ +++....+.. .......++++|+|++ .++.|+.+
T Consensus 149 ~~v~~~~~~~~~-~~~~~~~~l~s~~~d~~i~~wd~~---~~~~~~~~~~----h~~~v~~~~~sp~g~~l~s~~~dg~i 220 (319)
T 3frx_A 149 DWVSQVRVVPNE-KADDDSVTIISAGNDKMVKAWNLN---QFQIEADFIG----HNSNINTLTASPDGTLIASAGKDGEI 220 (319)
T ss_dssp SCEEEEEECCC-------CCEEEEEETTSCEEEEETT---TTEEEEEECC----CCSCEEEEEECTTSSEEEEEETTCEE
T ss_pred CcEEEEEEccCC-CCCCCccEEEEEeCCCEEEEEECC---cchhheeecC----CCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 999999999862 011124589999999999999954 4555554421 1223556789999987 56788999
Q ss_pred eEEEccc-------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2445 MLWYIPK-------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2445 ~Iwdi~~-------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
++|++.. .+...|.+++|+|++.+|++++.+ .+++|++..+..+..+.....+. ...|. ..+
T Consensus 221 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~------~~~~~----~~v 289 (319)
T 3frx_A 221 MLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGY------SKAAE----PHA 289 (319)
T ss_dssp EEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTC------CGGGC----CCE
T ss_pred EEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccc------ccCcC----cce
Confidence 9999643 245689999999999999988755 59999999888887663211111 12233 346
Q ss_pred EEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2518 TDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2518 tsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
.+++|+|+| |++|+.||+|++||+.++
T Consensus 290 ~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 290 VSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 788999999 899999999999998764
No 12
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.5e-28 Score=291.97 Aligned_cols=279 Identities=15% Similarity=0.162 Sum_probs=204.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
|.+++|+|+ +|++|+.|++|++||+.++. ....+. ...|.+.|++++|+|++++|++|+.||+|++||
T Consensus 17 v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~--------~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~ 86 (330)
T 2hes_X 17 IWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD--------ETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86 (330)
T ss_dssp EEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC--------TTCCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe--------cCCccCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 688999887 99999999999999998753 333331 123668999999999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCC--CCcceeeeccCCCeEEEEEc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPP--TSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~--~k~v~sl~gHs~~VtSLafs 2375 (2548)
++...... ........+.+|...|.+ |+|+|++|++++ .|++|++||++... .+++..+.+|...|++++|+
T Consensus 87 ~~~~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s---~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 87 KEESADRT-FEMDLLAIIEGHENEVKGVAWSNDGYYLATCS---RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp C--------CCCEEEEEEC----CEEEEEECTTSCEEEEEE---TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred cccCcCcc-ccceeEEEEcCCCCcEEEEEECCCCCEEEEEe---CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 96432110 111233457889998874 899999999996 89999999995321 24567788999999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC--CCC--ccCCCCCceEEEccc
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT--GSG--SKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd--Gk~--v~s~D~sv~Iwdi~~ 2451 (2548)
|+ +.+|++|+.||+|++||.+. ...+++..+. .+. .....+.|+|+ +.. .++.|+.+++|++..
T Consensus 163 p~-------~~~l~s~s~D~~i~iW~~~~-~~~~~~~~~~---~h~-~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 163 PS-------EALLASSSYDDTVRIWKDYD-DDWECVAVLN---GHE-GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp SS-------SSEEEEEETTSCEEEEEEET-TEEEEEEEEC---CCS-SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred CC-------CCEEEEEcCCCeEEEEECCC-CCeeEEEEcc---CCC-CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 98 78999999999999999541 1124555542 111 22445778888 443 677899999998632
Q ss_pred -----------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcE--EEEecccccccccccCcccCCCCc
Q 000054 2452 -----------------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQL--VYHWSKLHERHTFLQPSSRGFGGV 2512 (2548)
Q Consensus 2452 -----------------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgel--l~tL~~~Hs~hsfl~~tl~GH~~~ 2512 (2548)
.|...|++++|++++ +|++|+.||+|++||..+++. +... +.+|..
T Consensus 231 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-------------~~~h~~- 295 (330)
T 2hes_X 231 DDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-------------ALCHGV- 295 (330)
T ss_dssp ECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-------------SCTTTT-
T ss_pred CCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-------------cccccc-
Confidence 289999999999765 899999999999999987742 3222 245653
Q ss_pred eeecEEEEEEcC--Ce--EEEEECCCcEEEEECCC
Q 000054 2513 VRAGVTDIQVVS--RG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2513 V~a~VtsLafSP--dG--LaSGS~DGtIrIWDL~s 2543 (2548)
..|.+++|+| ++ |+|||.||+|++|++++
T Consensus 296 --~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 296 --YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp --SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred --ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 1357779999 56 99999999999999875
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=1.7e-27 Score=314.02 Aligned_cols=284 Identities=17% Similarity=0.181 Sum_probs=218.3
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+.+++|+|+++ .|++|+.|++|++||..+++...++.. |.+.|++++|+|+|++|++|+.||+|++||+
T Consensus 150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~----------H~~~V~~v~fspdg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE----------HTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC----------CSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc----------ccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence 79999999987 599999999999999988877776632 5689999999999999999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCC----------------------
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPT---------------------- 2356 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~---------------------- 2356 (2548)
.+++....... ......+|...|.+ |+|+|++|++++ .|++|++||+.+...
T Consensus 220 ~~g~~~~~~~~-~~~~~~~h~~~V~~v~~spdg~~l~s~s---~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (611)
T 1nr0_A 220 VDGTKTGVFED-DSLKNVAHSGSVFGLTWSPDGTKIASAS---ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 295 (611)
T ss_dssp TTCCEEEECBC-TTSSSCSSSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred CCCcEeeeecc-ccccccccCCCEEEEEECCCCCEEEEEe---CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC
Confidence 88764332100 00112278888874 899999999997 899999999875210
Q ss_pred -------------------CcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecC-
Q 000054 2357 -------------------SSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHS- 2416 (2548)
Q Consensus 2357 -------------------k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~- 2416 (2548)
+....+.+|...|++++|+|+ +++|++|+.||+|++||++ +++....+..
T Consensus 296 ~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spd-------g~~l~s~s~D~~v~~Wd~~---~~~~~~~~~~~ 365 (611)
T 1nr0_A 296 ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSAD-------GKTLFSADAEGHINSWDIS---TGISNRVFPDV 365 (611)
T ss_dssp CEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTT-------SSEEEEEETTSCEEEEETT---TCCEEECSSCS
T ss_pred EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCC-------CCEEEEEeCCCcEEEEECC---CCceeeecccC
Confidence 012345689999999999998 7899999999999999954 3332221100
Q ss_pred ------------------------------CCC-----------------------C-----------------------
Q 000054 2417 ------------------------------DRG-----------------------G----------------------- 2420 (2548)
Q Consensus 2417 ------------------------------~~~-----------------------~----------------------- 2420 (2548)
... .
T Consensus 366 h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~ 445 (611)
T 1nr0_A 366 HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 445 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE
T ss_pred CcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee
Confidence 000 0
Q ss_pred -CCccccccccCCCCCC--ccCCCCCceEEEcc---------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-Cc
Q 000054 2421 -SSINTCAHADAQTGSG--SKPGDQNGMLWYIP---------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA-AQ 2487 (2548)
Q Consensus 2421 -s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~---------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T-ge 2487 (2548)
.......++++|||++ +++.|+.+++|++. .+|...|++++|+|+|++|++++.|++|++||+.+ ++
T Consensus 446 ~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~ 525 (611)
T 1nr0_A 446 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE 525 (611)
T ss_dssp ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE
T ss_pred ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc
Confidence 0011235678999988 67788899999853 35899999999999999999999999999999987 55
Q ss_pred EEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2488 LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2488 ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
++... .+.+|.+. |++++|+|+| |+|||.|++|++|+++++.
T Consensus 526 ~~~~~------------~~~~H~~~----V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 526 LAHTN------------SWTFHTAK----VACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp ESCCC------------CCCCCSSC----EEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred eeeee------------eeeecccc----eeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 43220 02447654 5677999999 9999999999999998753
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=2.1e-27 Score=295.82 Aligned_cols=281 Identities=21% Similarity=0.302 Sum_probs=221.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCC--------CCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV--------PPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~--------~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
|.+++|+|+|++|++|+ ++.+++|++.+++.+..+........ ....+...|++++|+|+|++|++|+.||
T Consensus 67 V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~ 145 (393)
T 1erj_A 67 VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 145 (393)
T ss_dssp CCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCC
Confidence 68999999999999976 68999999999988777653221100 0012234599999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
+|++||+++++.. ..+.+|...|.+ |+|+++.+++++ .|++|++||+++ +++...+. +...+.+
T Consensus 146 ~i~iwd~~~~~~~--------~~~~~h~~~v~~~~~~p~~~~l~s~s---~d~~v~iwd~~~--~~~~~~~~-~~~~v~~ 211 (393)
T 1erj_A 146 LIRIWDIENRKIV--------MILQGHEQDIYSLDYFPSGDKLVSGS---GDRTVRIWDLRT--GQCSLTLS-IEDGVTT 211 (393)
T ss_dssp CEEEEETTTTEEE--------EEECCCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTT--TEEEEEEE-CSSCEEE
T ss_pred eEEEEECCCCcEE--------EEEccCCCCEEEEEEcCCCCEEEEec---CCCcEEEEECCC--CeeEEEEE-cCCCcEE
Confidence 9999999877532 347789988875 899999999986 899999999986 45555554 6778999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC---CCCCccccccccCCCCCC--ccCCCCCceE
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR---GGSSINTCAHADAQTGSG--SKPGDQNGML 2446 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~---~~s~~~~~~vafSpdGk~--v~s~D~sv~I 2446 (2548)
++++|.+ +.++++|+.||.|++||+ .+++.+..+.... .........+.|+|+|+. .++.|+.+++
T Consensus 212 ~~~~~~~------~~~l~~~s~d~~v~iwd~---~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 212 VAVSPGD------GKYIAAGSLDRAVRVWDS---ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp EEECSTT------CCEEEEEETTSCEEEEET---TTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEEECCC------CCEEEEEcCCCcEEEEEC---CCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 9999954 789999999999999994 4566665542111 112234567889999987 6677899999
Q ss_pred EEcc--------------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcc
Q 000054 2447 WYIP--------------------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSS 2506 (2548)
Q Consensus 2447 wdi~--------------------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl 2506 (2548)
|++. .+|...|.+++|+|++.+|++|+.||.|++||+.+++++..+
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l-------------- 348 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-------------- 348 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE--------------
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE--------------
Confidence 9853 368899999999999999999999999999999999988766
Q ss_pred cCCCCceeecEEEEEEcC------Ce--EEEEECCCcEEEEECCCC
Q 000054 2507 RGFGGVVRAGVTDIQVVS------RG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2507 ~GH~~~V~a~VtsLafSP------dG--LaSGS~DGtIrIWDL~sg 2544 (2548)
.+|.+. |.+++|++ ++ |+|||.||+|++|++...
T Consensus 349 ~~h~~~----v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 349 QGHRNS----VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECCSSC----EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCCC----EEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 677754 45668876 55 899999999999998653
No 15
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=1.2e-26 Score=274.97 Aligned_cols=272 Identities=14% Similarity=0.176 Sum_probs=215.9
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.+++|++++ +||+| .|++|+|||..+++.+..+.. ..|...|++++|+|++++|++|+.||+|++||+++
T Consensus 29 ~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~--------~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~ 98 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQM--------EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 98 (318)
T ss_dssp BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEEC--------CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred eEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEe--------cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC
Confidence 568999886 66665 599999999999998888753 23568899999999999999999999999999998
Q ss_pred CcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSG 2382 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~g 2382 (2548)
++.. ..+.+|...+.++++++..+++++ .++.+++|+.... ...+..+.+|...+..+.+.+.
T Consensus 99 ~~~~--------~~~~~h~~~~~~~~~~~~~l~s~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----- 161 (318)
T 4ggc_A 99 QKRL--------RNMTSHSARVGSLSWNSYILSSGS---RSGHIHHHDVRVA-EHHVATLSGHSQEVCGLRWAPD----- 161 (318)
T ss_dssp TEEE--------EEEECCSSCEEEEEEETTEEEEEE---TTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTT-----
T ss_pred ceeE--------EEecCccceEEEeecCCCEEEEEe---cCCceEeeecCCC-ceeEEEEcCccCceEEEEEcCC-----
Confidence 8643 346789888888888899999986 8999999998763 4567788899999999999988
Q ss_pred CCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-----ccCCCCCceEEEccc------
Q 000054 2383 SVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-----SKPGDQNGMLWYIPK------ 2451 (2548)
Q Consensus 2383 s~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-----v~s~D~sv~Iwdi~~------ 2451 (2548)
+.++++++.||+|++||++. ++..................+.+.+++.. .+..++.+++|+...
T Consensus 162 --~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 162 --GRHLASGGNDNLVNVWPSAP---GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp --SSEEEEEETTSCEEEEESSC---BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE
T ss_pred --CCEEEEEecCcceeEEECCC---CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc
Confidence 78999999999999999653 32211110000111112334556666543 355677899998533
Q ss_pred -CCCCCEEEEEEeCCCCEEEEEe--CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--
Q 000054 2452 -AHLGSVTRISTVPNTSLFLTGS--KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-- 2526 (2548)
Q Consensus 2452 -gH~~~VtsLafSPdG~~LaSGS--~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-- 2526 (2548)
.|...+..+.|+|++..+++++ .||.|++||+++++++.++ .||.+. |++++|+|+|
T Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l--------------~gH~~~----V~~l~~spdg~~ 298 (318)
T 4ggc_A 237 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL--------------KGHTSR----VLSLTMSPDGAT 298 (318)
T ss_dssp EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE--------------CCCSSC----EEEEEECTTSSC
T ss_pred ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE--------------cCCCCC----EEEEEEcCCCCE
Confidence 4677899999999999888765 7999999999999999877 678754 5777999999
Q ss_pred EEEEECCCcEEEEECCCC
Q 000054 2527 FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2527 LaSGS~DGtIrIWDL~sg 2544 (2548)
|+|||.||+|++||+.+.
T Consensus 299 l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 299 VASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEETTTEEEEECCSCC
T ss_pred EEEEecCCeEEEEECCCC
Confidence 999999999999999653
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=4.5e-27 Score=310.01 Aligned_cols=285 Identities=18% Similarity=0.181 Sum_probs=225.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+|++|++++ ++.|++|++.+++....+.. |.+.|++++|+|+|++|++|+.||+|++||+.
T Consensus 21 ~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~----------h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~ 89 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTE----------HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT 89 (611)
T ss_dssp CCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECC----------CSSCEEEEEECTTSSEEEEEETTSEEEEEESS
T ss_pred eeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecC----------CCCceEEEEECCCCcEEEEEeCCCCEEEeECC
Confidence 36788999999999987 56999999998887777643 56899999999999999999999999999997
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCC--CCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSN--GINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~--DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+++... ...+.+|...|.+ |+|+|+.+++++.. . ++.|++||. ++....+.+|.+.|++++|+|+
T Consensus 90 ~~~~~~------~~~~~~~~~~v~~v~fs~dg~~l~~~~~~-~~~~~~v~~wd~----~~~~~~l~gh~~~v~~v~f~p~ 158 (611)
T 1nr0_A 90 QTTHIL------KTTIPVFSGPVKDISWDSESKRIAAVGEG-RERFGHVFLFDT----GTSNGNLTGQARAMNSVDFKPS 158 (611)
T ss_dssp STTCCE------EEEEECSSSCEEEEEECTTSCEEEEEECC-SSCSEEEEETTT----CCBCBCCCCCSSCEEEEEECSS
T ss_pred CCccee------eEeecccCCceEEEEECCCCCEEEEEECC-CCceeEEEEeeC----CCCcceecCCCCCceEEEECCC
Confidence 654221 2346778888874 99999999998721 1 157888885 3466778899999999999998
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc-----
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP----- 2450 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~----- 2450 (2548)
. ...|++|+.|++|++|| ..++++...+.. + ......++|+|+|++ .++.|+.+++|+..
T Consensus 159 ~------~~~l~s~s~D~~v~lwd---~~~~~~~~~l~~---H-~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 159 R------PFRIISGSDDNTVAIFE---GPPFKFKSTFGE---H-TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 225 (611)
T ss_dssp S------SCEEEEEETTSCEEEEE---TTTBEEEEEECC---C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred C------CeEEEEEeCCCeEEEEE---CCCCeEeeeecc---c-cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEe
Confidence 3 34799999999999999 455666666521 1 224567899999987 67889999999842
Q ss_pred ----c------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccc--cc------------------
Q 000054 2451 ----K------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHER--HT------------------ 2500 (2548)
Q Consensus 2451 ----~------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~--hs------------------ 2500 (2548)
. +|.+.|.+++|+|+|++|++|+.|++|++||+.+++++.+++..+.. ..
T Consensus 226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~ 305 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 305 (611)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCC
T ss_pred eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCc
Confidence 2 79999999999999999999999999999999999988877421100 00
Q ss_pred ---------cccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2501 ---------FLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2501 ---------fl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.....+.||.+. |++++|+|+| |++++.||+|++||+.++.
T Consensus 306 i~~~~~~~~~~~~~~~gh~~~----v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 306 INFVNPELGSIDQVRYGHNKA----ITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp EEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEEeCCCCCcceEEcCCCCC----EEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 001234677754 5777999999 9999999999999998764
No 17
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=1.8e-26 Score=276.28 Aligned_cols=252 Identities=21% Similarity=0.219 Sum_probs=191.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCC--ceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD--KATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg--~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrV 2297 (2548)
|.+++|+|+|++||+|+.|++|+|||+.++ +.+.++. +|.+.|++++|++ ++++|++|+.||+|++
T Consensus 12 V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~----------gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT----------GHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC----------CCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc----------cccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 689999999999999999999999999753 4445543 3669999999986 4899999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccEEE--EcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
||++++... ....+.+|...|.+ |+|+ |.++++++ .|+.|++||++.........+.+|...|.+++
T Consensus 82 Wd~~~~~~~------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s---~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~ 152 (297)
T 2pm7_B 82 WKEENGRWS------QIAVHAVHSASVNSVQWAPHEYGPMLLVAS---SDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (297)
T ss_dssp EEBSSSCBC------CCEEECCCSSCEEEEEECCGGGCSEEEEEE---TTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred EEcCCCceE------EEEEeecCCCceeEEEeCcCCCCcEEEEEE---CCCcEEEEEecCCCceeeeeeecccCccceEe
Confidence 999876421 12346678888864 8887 88999986 89999999997632223567789999999999
Q ss_pred EccCCCCC------CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000054 2374 VFDNDLGS------GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2374 fsP~dlg~------gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
|+|+.... ...+.+|++|+.||+|++||++ +++.... +.
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~---~~~~~~~--------------------------------~~ 197 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN---SDAQTYV--------------------------------LE 197 (297)
T ss_dssp ECCCC------------CCEEEEEETTSCEEEEEEE---TTTTEEE--------------------------------EE
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEc---CCCceEE--------------------------------EE
Confidence 99962000 0014699999999999999954 2321100 11
Q ss_pred EcccCCCCCEEEEEEeCCC---CEEEEEeCCCcEEEEECCCCc--EEEEecccccccccccCcccCCCCceeecEEEEEE
Q 000054 2448 YIPKAHLGSVTRISTVPNT---SLFLTGSKDGDVKLWDAKAAQ--LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQV 2522 (2548)
Q Consensus 2448 di~~gH~~~VtsLafSPdG---~~LaSGS~DGtIrIWDl~Tge--ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLaf 2522 (2548)
..+.+|.+.|.+++|+|++ .+|++|+.||+|+|||++++. ...... ...+|.+ .|++++|
T Consensus 198 ~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~-----------~~~~~~~----~v~~~~~ 262 (297)
T 2pm7_B 198 STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLL-----------KEEKFPD----VLWRASW 262 (297)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEES-----------SSSCCSS----CEEEEEE
T ss_pred EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeee-----------ecccCCC----cEEEEEE
Confidence 1237899999999999984 899999999999999998643 111110 0134543 4677899
Q ss_pred cCCe--EEEEECCCcEEEEECC
Q 000054 2523 VSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2523 SPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
+|+| |++++.||+|++|+..
T Consensus 263 s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 263 SLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCEEEEEcCCCcEEEEEEC
Confidence 9999 9999999999999986
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.95 E-value=3.8e-27 Score=287.53 Aligned_cols=293 Identities=15% Similarity=0.210 Sum_probs=216.4
Q ss_pred CccCCeE--EEEEEE-----cC-CCCEEEEEECCCeEEEEEcCCCce----eEEEeccCCCCCCCCCCCCCeEEEEEccC
Q 000054 2215 ATVENIS--TRAFSS-----HP-LRPFFLVGSSNTHIYLWEFGKDKA----TATYGVLPAANVPPPYALASISALQFDHY 2282 (2548)
Q Consensus 2215 ~tl~gV~--V~~Vsf-----SP-dG~~LASGS~DGsVrLWDl~tg~~----l~t~~~l~ghs~~~~~H~~~VtsVaFSPd 2282 (2548)
..+.+|. |.+++| ++ ++++|++|+.|++|++||+.+++. ......+. +|...|++++|+|+
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~-------~h~~~V~~~~~~~~ 87 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT-------GHNHFVSDLALSQE 87 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC-------CCSSCEEEEEECSS
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc-------cCCCceEEEEECCC
Confidence 3445554 788988 66 899999999999999999975432 11122222 35689999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce
Q 000054 2283 GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA 2360 (2548)
Q Consensus 2283 G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~ 2360 (2548)
+.++++|+.||+|++||+++++.. ..+.+|...|.+ |+|+++++++++ .|++|++||+.. ....
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~--------~~~~~h~~~v~~v~~sp~~~~l~s~~---~d~~i~~wd~~~---~~~~ 153 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTY--------KRFVGHQSEVYSVAFSPDNRQILSAG---AEREIKLWNILG---ECKF 153 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEE--------EEEECCCSCEEEEEECSSTTEEEEEE---TTSCEEEEESSS---CEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEE--------EEEcCCCCcEEEEEECCCCCEEEEEc---CCCEEEEEeccC---Ccee
Confidence 999999999999999999987532 347789888874 899999999997 899999999973 2222
Q ss_pred ee---eccCCCeEEEEEccCCCC---CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCC
Q 000054 2361 SI---TCHEGGARSISVFDNDLG---SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTG 2434 (2548)
Q Consensus 2361 sl---~gHs~~VtSLafsP~dlg---~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdG 2434 (2548)
.. .+|...|.+++|+|.... ..+.+.++++|+.||+|++||.+ ++....+.. + ......++|+|+|
T Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~---h-~~~v~~~~~s~~g 225 (343)
T 2xzm_R 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN----FQIRYTFKA---H-ESNVNHLSISPNG 225 (343)
T ss_dssp ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT----TEEEEEEEC---C-SSCEEEEEECTTS
T ss_pred eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC----CceeEEEcC---c-cccceEEEECCCC
Confidence 22 378999999999997310 01123699999999999999943 233333311 1 1235668899999
Q ss_pred CC--ccCCCCCceEEEccc--------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEE--Eecccccccccc
Q 000054 2435 SG--SKPGDQNGMLWYIPK--------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVY--HWSKLHERHTFL 2502 (2548)
Q Consensus 2435 k~--v~s~D~sv~Iwdi~~--------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~--tL~~~Hs~hsfl 2502 (2548)
++ .++.|+.+++|++.. .+...|.+++|+|++.++++| .|+.|++||+.+++... ++... ....
T Consensus 226 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~-~~~~-- 301 (343)
T 2xzm_R 226 KYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAE-PITK-- 301 (343)
T ss_dssp SEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCC-SGGG--
T ss_pred CEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecC-cchh--
Confidence 98 667889999999732 256679999999999988755 58889999998776543 33110 0000
Q ss_pred cCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2503 QPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2503 ~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
.....+|.+ .|.+++|+|+| |++|+.||+|++|+++++
T Consensus 302 ~~~~~~~~~----~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 302 AEGQKGKNP----QCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BTTBCCSCC----CEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhhcCCCC----ceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 011246654 35778999999 999999999999998765
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.95 E-value=1.7e-26 Score=276.22 Aligned_cols=291 Identities=19% Similarity=0.261 Sum_probs=219.4
Q ss_pred CCccCCeE--EEEEEEcCC-CCEEEEEECCCeEEEEEcCCCceeE--EEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE
Q 000054 2214 PATVENIS--TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATA--TYGVLPAANVPPPYALASISALQFDHYGHRFAS 2288 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg~~l~--t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS 2288 (2548)
..++.+|. |.+++|+|+ +++|+||+.||+|+|||+.+++... ....+. +|.+.|++++|+|++++|++
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-------~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-------GHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-------CCSSCEEEEEECTTSSEEEE
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-------CCCCCEEEEEECCCCCEEEE
Confidence 44567776 899999998 6899999999999999998754321 122222 35689999999999999999
Q ss_pred EeCCCcEEEEEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC
Q 000054 2289 AALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2289 GS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
|+.||.|++|+........ ....+...+ ..+++++..+++++ .|+.+++||+... ........+|.
T Consensus 104 ~~~d~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~s~s---~d~~~~~~d~~~~-~~~~~~~~~~~ 171 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTR--------RFVGHTKDVLSVAFSSDNRQIVSGS---RDKTIKLWNTLGV-CKYTVQDESHS 171 (340)
T ss_dssp EETTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECTTSSCEEEEE---TTSCEEEECTTSC-EEEEECSSSCS
T ss_pred EcccccceEEeecccceee--------eecCCCCceeEEEEeecCccceeec---CCCeEEEEEeCCC-ceEEEEecccc
Confidence 9999999999998764322 122333333 35888999999986 8999999998752 23345566899
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCc
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNG 2444 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv 2444 (2548)
..+..++|+++. ...++++++.|+.|++|| ..+++.+..+.. + ......++++|+|++ +++.|+.+
T Consensus 172 ~~v~~~~~~~~~-----~~~~~~s~~~d~~i~i~d---~~~~~~~~~~~~---h-~~~v~~~~~s~~~~~l~s~s~Dg~i 239 (340)
T 4aow_A 172 EWVSCVRFSPNS-----SNPIIVSCGWDKLVKVWN---LANCKLKTNHIG---H-TGYLNTVTVSPDGSLCASGGKDGQA 239 (340)
T ss_dssp SCEEEEEECSCS-----SSCEEEEEETTSCEEEEE---TTTTEEEEEECC---C-SSCEEEEEECTTSSEEEEEETTCEE
T ss_pred CcccceEEccCC-----CCcEEEEEcCCCEEEEEE---CCCCceeeEecC---C-CCcEEEEEECCCCCEEEEEeCCCeE
Confidence 999999998873 256899999999999999 455666666521 1 123456789999988 66788999
Q ss_pred eEEEccc-------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2445 MLWYIPK-------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2445 ~Iwdi~~-------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
++|++.. .+...|.++.|+|++.++ +++.|+.|++||++++..+..++..... ....+|.. .|
T Consensus 240 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~h~~----~v 309 (340)
T 4aow_A 240 MLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVIS-----TSSKAEPP----QC 309 (340)
T ss_dssp EEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC------------CCCC----CE
T ss_pred EEEEeccCceeeeecCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEecccccee-----eeccCCCC----CE
Confidence 9999643 355689999999988665 5567999999999999998877422211 12356764 45
Q ss_pred EEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2518 TDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2518 tsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
++++|+|+| |+||+.||+|++||+++|.
T Consensus 310 ~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 310 TSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 778999999 8999999999999999885
No 20
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.5e-26 Score=269.67 Aligned_cols=275 Identities=14% Similarity=0.117 Sum_probs=225.2
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
.+.+|. +.+++| |++++|++|+.||.|++||+.+++....+.. |.+.|.+++|+|+++++++|+.||
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT----------GQGFLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE----------CSSCEEEEEEETTTTEEEEEETTS
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec----------CCccEEEEEECCCCCEEEEecCCC
Confidence 344444 789999 9999999999999999999998887777653 458899999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
.|++|++...... .....+.+|...|.++..+++.+++++ .|+.|++||. .+.+..+..|...+.++.
T Consensus 82 ~i~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~l~~~~---~d~~i~~~d~----~~~~~~~~~~~~~v~~~~ 149 (313)
T 3odt_A 82 MINGVPLFATSGE-----DPLYTLIGHQGNVCSLSFQDGVVISGS---WDKTAKVWKE----GSLVYNLQAHNASVWDAK 149 (313)
T ss_dssp CEEEEETTCCTTS-----CC-CEECCCSSCEEEEEEETTEEEEEE---TTSEEEEEET----TEEEEEEECCSSCEEEEE
T ss_pred eEEEEEeeecCCC-----CcccchhhcccCEEEEEecCCEEEEEe---CCCCEEEEcC----CcEEEecccCCCceeEEE
Confidence 9999999765321 123446788888887666889999986 8999999992 567888889999999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEcc--
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYIP-- 2450 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~-- 2450 (2548)
+.|.+ +..+++++.||.|++||.+ +....+. .........+.+++++.+ ++..++.+++|++.
T Consensus 150 ~~~~~------~~~l~~~~~d~~i~i~d~~-----~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 215 (313)
T 3odt_A 150 VVSFS------ENKFLTASADKTIKLWQND-----KVIKTFS---GIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG 215 (313)
T ss_dssp EEETT------TTEEEEEETTSCEEEEETT-----EEEEEEC---SSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC
T ss_pred EccCC------CCEEEEEECCCCEEEEecC-----ceEEEEe---ccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch
Confidence 99954 7899999999999999943 3444431 112233566788888887 67788899999853
Q ss_pred ------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcC
Q 000054 2451 ------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2451 ------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
.+|.+.|++++|+|++ .|++|+.||.|++||+++++++..+ .+|.+ .|.+++|+|
T Consensus 216 ~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~--------------~~~~~----~i~~~~~~~ 276 (313)
T 3odt_A 216 DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI--------------TLPAI----SIWSVDCMS 276 (313)
T ss_dssp CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE--------------ECSSS----CEEEEEECT
T ss_pred hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE--------------eccCc----eEEEEEEcc
Confidence 4699999999999999 5889999999999999999998877 44543 367789999
Q ss_pred Ce-EEEEECCCcEEEEECCCCcc
Q 000054 2525 RG-FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2525 dG-LaSGS~DGtIrIWDL~sg~l 2546 (2548)
++ +++++.||.|++||++++..
T Consensus 277 ~~~~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 277 NGDIIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp TSCEEEEETTSCEEEEESCGGGC
T ss_pred CCCEEEEeCCCcEEEEeCCCCce
Confidence 99 99999999999999987643
No 21
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.95 E-value=5.8e-26 Score=284.69 Aligned_cols=271 Identities=14% Similarity=0.173 Sum_probs=218.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+..++|+++ ++||+|. |++|+|||..+|+....+.. ..|.+.|++|+|+|+|++|++|+.||+|++||++
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~--------~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~ 177 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQM--------EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEEC--------CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEe--------cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC
Confidence 367889875 5777765 99999999999998877643 2356889999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
+++.. ..+.+|...+.++++++.++++++ .|+.+++||.... ...+..+.+|...+..+.+.|.
T Consensus 178 ~~~~~--------~~~~~h~~~v~~~s~~~~~l~sgs---~d~~i~~~d~~~~-~~~~~~~~~h~~~~~~~~~~~~---- 241 (420)
T 4gga_A 178 QQKRL--------RNMTSHSARVGSLSWNSYILSSGS---RSGHIHHHDVRVA-EHHVATLSGHSQEVCGLRWAPD---- 241 (420)
T ss_dssp TTEEE--------EEECCCSSCEEEEEEETTEEEEEE---TTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTT----
T ss_pred CCcEE--------EEEeCCCCceEEEeeCCCEEEEEe---CCCceeEeeeccc-ceeeEEecccccceeeeeecCC----
Confidence 87643 347789999999888999999986 8999999999863 4567788999999999999998
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCc-eeeeecCCCCCCCccccccccCCCCCC-----ccCCCCCceEEEcccC---
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGK-TKKHKHSDRGGSSINTCAHADAQTGSG-----SKPGDQNGMLWYIPKA--- 2452 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk-~l~tl~~~~~~s~~~~~~vafSpdGk~-----v~s~D~sv~Iwdi~~g--- 2452 (2548)
+.++++++.||.|++||.+...... .+... .........++++|++.. .++.|+.+++|++..+
T Consensus 242 ---g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~----~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~ 314 (420)
T 4gga_A 242 ---GRHLASGGNDNLVNVWPSAPGEGGWVPLQTF----TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314 (420)
T ss_dssp ---SSEEEEEETTSCEEEEESSCCSSCSCCSEEE----CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE
T ss_pred ---CCeeeeeeccccceEEeeccccccceeeeee----cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc
Confidence 7899999999999999965311111 11111 111223455678887664 2456889999997542
Q ss_pred ----CCCCEEEEEEeCCCCEEEEEe--CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000054 2453 ----HLGSVTRISTVPNTSLFLTGS--KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2453 ----H~~~VtsLafSPdG~~LaSGS--~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
+...|.++.|+|+++.+++++ .||.|+|||+.+++++.++ .||.+. |++++|+|+|
T Consensus 315 ~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l--------------~gH~~~----V~~l~~spdg 376 (420)
T 4gga_A 315 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL--------------KGHTSR----VLSLTMSPDG 376 (420)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE--------------CCCSSC----EEEEEECTTS
T ss_pred eeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE--------------cCCCCC----EEEEEEcCCC
Confidence 456899999999999998875 6999999999999999877 688754 5677999999
Q ss_pred --EEEEECCCcEEEEECCC
Q 000054 2527 --FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2527 --LaSGS~DGtIrIWDL~s 2543 (2548)
|+|||.||+|+|||+.+
T Consensus 377 ~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 377 ATVASAAADETLRLWRCFE 395 (420)
T ss_dssp SCEEEEETTTEEEEECCSC
T ss_pred CEEEEEecCCeEEEEECCC
Confidence 99999999999999865
No 22
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.95 E-value=1.5e-26 Score=285.04 Aligned_cols=248 Identities=19% Similarity=0.173 Sum_probs=192.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccC-CC----CCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLP-AA----NVPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~-gh----s~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVr 2296 (2548)
+.+++|+|||++|++++ |+++++||... ..+.... .+ ......|...|.+++|+|++ .+++|+.||+|+
T Consensus 33 v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~ 106 (344)
T 4gqb_B 33 LEAARYRSDGALLLGAS-SLSGRCWAGSL----WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVE 106 (344)
T ss_dssp EEEEEECTTSCEEEEEE-CCSSSCCCEEE----EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEE
T ss_pred EEEEEECCCCCEEEEEe-CCceEEeecee----eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEE
Confidence 68999999999998877 77888887321 1111000 00 00011134679999999985 688999999999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
+||+++++.... ......+|...|.+ |+|+|++|++|+ .|++|++||+.+ ++++..+.+|.+.|++++|
T Consensus 107 lWd~~~~~~~~~----~~~~~~~H~~~V~~v~~spdg~~l~sgs---~d~~i~iwd~~~--~~~~~~~~~h~~~V~~~~~ 177 (344)
T 4gqb_B 107 LWELDENETLIV----SKFCKYEHDDIVSTVSVLSSGTQAVSGS---KDICIKVWDLAQ--QVVLSSYRAHAAQVTCVAA 177 (344)
T ss_dssp EEEECTTSSCEE----EEEEEECCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTT--TEEEEEECCCSSCEEEEEE
T ss_pred EEeccCCCceeE----eeccccCCCCCEEEEEECCCCCEEEEEe---CCCeEEEEECCC--CcEEEEEcCcCCceEEEEe
Confidence 999998864332 12235689988875 899999999996 899999999986 6788999999999999999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
++++ ..++++|+.||+|++||++ +++....+. ...|.
T Consensus 178 ~~~~------~~~l~s~s~D~~v~iwd~~---~~~~~~~~~----------------------------------~~~~~ 214 (344)
T 4gqb_B 178 SPHK------DSVFLSCSEDNRILLWDTR---CPKPASQIG----------------------------------CSAPG 214 (344)
T ss_dssp CSSC------TTEEEEEETTSCEEEEETT---SSSCEEECC--------------------------------------C
T ss_pred cCCC------CCceeeecccccccccccc---ccceeeeee----------------------------------cceee
Confidence 9984 5689999999999999954 556555440 03466
Q ss_pred CCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEE
Q 000054 2455 GSVTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSC 2530 (2548)
Q Consensus 2455 ~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSG 2530 (2548)
..+.+++|+|+ +++|++|+.||+|++||+++++++.++ .+|.+. |++++|+|+| |+||
T Consensus 215 ~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~--------------~~h~~~----v~~v~fsp~g~~~lasg 276 (344)
T 4gqb_B 215 YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS--------------AVHSQC----VTGLVFSPHSVPFLASL 276 (344)
T ss_dssp CCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE--------------ECCSSC----EEEEEECSSSSCCEEEE
T ss_pred ccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE--------------cCCCCC----EEEEEEccCCCeEEEEE
Confidence 68999999994 678999999999999999999988766 677754 5677999997 8899
Q ss_pred ECCCcEEEEECCCCc
Q 000054 2531 GGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2531 S~DGtIrIWDL~sg~ 2545 (2548)
+.||+|++||+.++.
T Consensus 277 s~D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 277 SEDCSLAVLDSSLSE 291 (344)
T ss_dssp ETTSCEEEECTTCCE
T ss_pred eCCCeEEEEECCCCc
Confidence 999999999998874
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.95 E-value=4.8e-26 Score=270.85 Aligned_cols=269 Identities=14% Similarity=0.179 Sum_probs=219.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+++++++++ ||.|++||+.+++....+.... ...|...|.+++|+|+++++++++.||.|++||++
T Consensus 54 v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 127 (337)
T 1gxr_A 54 VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD-----CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE-----CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred eEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeeccc-----ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 58899999999999999 9999999998765433322211 12356899999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+++... ...+..|...|.+ ++|+++++++++ .|+.|++||++. .+.+..+.+|.+.|.+++|+|+
T Consensus 128 ~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~v~~~d~~~--~~~~~~~~~~~~~i~~~~~~~~-- 194 (337)
T 1gxr_A 128 APTPRI------KAELTSSAPACYALAISPDSKVCFSCC---SDGNIAVWDLHN--QTLVRQFQGHTDGASCIDISND-- 194 (337)
T ss_dssp CC--EE------EEEEECSSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTT--
T ss_pred CCCcce------eeecccCCCceEEEEECCCCCEEEEEe---CCCcEEEEeCCC--CceeeeeecccCceEEEEECCC--
Confidence 765211 2235677777764 899999999986 899999999986 5778888899999999999998
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc-------
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP------- 2450 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~------- 2450 (2548)
++.+++++.||.|++||+ .+++.+..+.. ......+.++|+++. ++..++.+++|++.
T Consensus 195 -----~~~l~~~~~dg~i~~~d~---~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 195 -----GTKLWTGGLDNTVRSWDL---REGRQLQQHDF-----TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp -----SSEEEEEETTSEEEEEET---TTTEEEEEEEC-----SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred -----CCEEEEEecCCcEEEEEC---CCCceEeeecC-----CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE
Confidence 789999999999999995 45666555421 123456789999987 56678899999953
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL 2528 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La 2528 (2548)
..|...|.+++|+|++++|++++.||.|++||+.+++.+... .|. ..|.+++|+|++ |+
T Consensus 262 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~---------------~~~----~~v~~~~~s~~~~~l~ 322 (337)
T 1gxr_A 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---------------KES----SSVLSCDISVDDKYIV 322 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---------------ECS----SCEEEEEECTTSCEEE
T ss_pred cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe---------------cCC----CcEEEEEECCCCCEEE
Confidence 478999999999999999999999999999999999887544 233 336778999999 88
Q ss_pred EEECCCcEEEEEC
Q 000054 2529 SCGGDGSVKLIQL 2541 (2548)
Q Consensus 2529 SGS~DGtIrIWDL 2541 (2548)
+++.||.|++|++
T Consensus 323 ~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 323 TGSGDKKATVYEV 335 (337)
T ss_dssp EEETTSCEEEEEE
T ss_pred EecCCCeEEEEEE
Confidence 9999999999997
No 24
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.95 E-value=8.2e-26 Score=291.82 Aligned_cols=259 Identities=22% Similarity=0.298 Sum_probs=216.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+++++++++.||+|++||..... +..+. .|...|.+++|+|+++++++|+.||.|++||..
T Consensus 306 v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~~----------~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~ 374 (577)
T 2ymu_A 306 VWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTLT----------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEEC----------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEEe----------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC
Confidence 6899999999999999999999999976543 33332 245889999999999999999999999999964
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
++. ...+.+|...|.+ ++|+|+++++++ .|+.|++||.. ++.+..+.+|...|++++|+|+
T Consensus 375 -~~~--------~~~~~~~~~~v~~~~~s~dg~~l~~~~---~d~~v~~~~~~---~~~~~~~~~~~~~v~~~~~s~d-- 437 (577)
T 2ymu_A 375 -GQL--------LQTLTGHSSSVRGVAFSPDGQTIASAS---DDKTVKLWNRN---GQLLQTLTGHSSSVWGVAFSPD-- 437 (577)
T ss_dssp -CCE--------EEEEECCSSCEEEEEECTTSSCEEEEE---TTSEEEEECTT---CCEEEEEECCSSCEEEEEECTT--
T ss_pred -CCE--------EEEecCCCCCeEEEEECCCCCEEEEEe---CCCEEEEEeCC---CCEEEEecCCCCCeEEEEECCC--
Confidence 321 2346778888864 899999999986 89999999964 5678889999999999999998
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc-------c
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI-------P 2450 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi-------~ 2450 (2548)
+.+|++++.|+.|++||. +++.+..+... ......++|+|+|++ +++.|+.+++|+. +
T Consensus 438 -----~~~l~~~~~d~~v~~w~~----~~~~~~~~~~~----~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~ 504 (577)
T 2ymu_A 438 -----DQTIASASDDKTVKLWNR----NGQLLQTLTGH----SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 504 (577)
T ss_dssp -----SSEEEEEETTSEEEEEET----TSCEEEEEECC----SSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEE
T ss_pred -----CCEEEEEcCCCEEEEEEC----CCCEEEEEcCC----CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEE
Confidence 689999999999999994 34555554221 223456889999998 5677889999983 4
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL 2528 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La 2528 (2548)
.+|...|++++|+|+|++|++|+.||.|++||. +++++.++ .+|.+. |++++|+||| |+
T Consensus 505 ~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~--------------~~h~~~----v~~~~fs~dg~~l~ 565 (577)
T 2ymu_A 505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL--------------TGHSSS----VWGVAFSPDGQTIA 565 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE--------------ECCSSC----EEEEEECTTSSCEE
T ss_pred eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE--------------cCCCCC----EEEEEEcCCCCEEE
Confidence 579999999999999999999999999999996 67887766 678754 5677999999 99
Q ss_pred EEECCCcEEEEE
Q 000054 2529 SCGGDGSVKLIQ 2540 (2548)
Q Consensus 2529 SGS~DGtIrIWD 2540 (2548)
|+|.||+|++||
T Consensus 566 s~~~D~~i~~Wd 577 (577)
T 2ymu_A 566 SASSDKTVKLWN 577 (577)
T ss_dssp EEETTSCEEEEC
T ss_pred EEeCCCEEEEeC
Confidence 999999999997
No 25
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=2.1e-26 Score=290.28 Aligned_cols=280 Identities=14% Similarity=0.139 Sum_probs=203.5
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWD 2299 (2548)
|.|++||| ++.+||+|+.||+|+|||+.+++....+. ..+|.+.|++|+|+| ++++|++|+.||+|++||
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~--------~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK--------GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC--------CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE--------ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 79999999 46799999999999999999876555542 234779999999998 689999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
++++..... .....+...+ ..+++++++|++|+ .||.|++||++ ++.+..+.+|.+.|++++|+|.
T Consensus 194 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~g~---~dg~i~~wd~~---~~~~~~~~~h~~~v~~v~~~p~ 261 (435)
T 4e54_B 194 FKGNILRVF------ASSDTINIWFCSLDVSASSRMVVTGD---NVGNVILLNMD---GKELWNLRMHKKKVTHVALNPC 261 (435)
T ss_dssp TTSCEEEEE------ECCSSCSCCCCCEEEETTTTEEEEEC---SSSBEEEEESS---SCBCCCSBCCSSCEEEEEECTT
T ss_pred ccCCceeEE------eccCCCCccEEEEEECCCCCEEEEEe---CCCcEeeeccC---cceeEEEecccceEEeeeecCC
Confidence 986532111 1112222223 24889999999986 89999999986 4567788899999999999998
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEccc----
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIPK---- 2451 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~~---- 2451 (2548)
+ ..++++|+.||+|++||++.......+... ..+ ......++|+|+|.+ +++.|+.+++|++..
T Consensus 262 ~------~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~---~~h-~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 262 C------DWFLATASVDQTVKIWDLRQVRGKASFLYS---LPH-RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP 331 (435)
T ss_dssp C------SSEEEEEETTSBCCEEETTTCCSSSCCSBC---CBC-SSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSE
T ss_pred C------ceEEEEecCcceeeEEecccccccceEEEe---eec-cccccceeECCCCCeeEEEcCCCEEEEEECCCCccc
Confidence 4 568999999999999997642222221111 111 223456789999987 677889999999643
Q ss_pred ----CCCC------CEEEEEEeCCCCEEEEEeC------------CCcEEEEECCCCcEEEEecccccccccccCcccCC
Q 000054 2452 ----AHLG------SVTRISTVPNTSLFLTGSK------------DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGF 2509 (2548)
Q Consensus 2452 ----gH~~------~VtsLafSPdG~~LaSGS~------------DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH 2509 (2548)
.|.. .+....|+|++.++++++. ++.|++||..+++.+.++ ..+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l-------------~~~~ 398 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL-------------YDPE 398 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE-------------CCSS
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE-------------eCCC
Confidence 2221 2345678888877777642 357999999999998877 2456
Q ss_pred CCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCCccc
Q 000054 2510 GGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDYQHR 2547 (2548)
Q Consensus 2510 ~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg~lr 2547 (2548)
...|.+. .+|+|+| +++++.|++|+||+++++..|
T Consensus 399 ~~~v~s~---~~fspdg~~lasg~d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 399 SSGISSL---NEFNPMGDTLASAMGYHILIWSQQEARTR 434 (435)
T ss_dssp CCCCCCE---EEECTTSSCEEEECSSEEEECCCC-----
T ss_pred CCcEEEE---EEECCCCCEEEEEcCCcEEEEECCcCeee
Confidence 6544332 2799999 443445899999999998654
No 26
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.9e-25 Score=268.69 Aligned_cols=270 Identities=13% Similarity=0.187 Sum_probs=221.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+|++++|++|+.||.|++||+.+++.+..+.. |.+.|++++|+|++++|++++.||.|++||+.
T Consensus 35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG----------HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC----------CSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh----------cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 79999999999999999999999999999988887743 55899999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCC-----CeEEEEECCCCCC---------Ccceeeecc
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNG-----INVVVWDTLAPPT---------SSRASITCH 2365 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~D-----GtVrIWDl~t~~~---------k~v~sl~gH 2365 (2548)
+++.... +. +...+. .++|+++.+++++ .+ +.|++||+..... ..+..+..|
T Consensus 105 ~~~~~~~--------~~-~~~~v~~~~~~~~~~~l~~~~---~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 105 NGQCVAT--------WK-SPVPVKRVEFSPCGNYFLAIL---DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp TCCEEEE--------EE-CSSCEEEEEECTTSSEEEEEE---CCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred CCcEEEE--------ee-cCCCeEEEEEccCCCEEEEec---CCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 8764332 22 455555 4899999999986 67 9999999875321 244556667
Q ss_pred CC--CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCcccc-CceeeeecCCCCCCCccccccccCCCCCC--ccCC
Q 000054 2366 EG--GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIAT-GKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPG 2440 (2548)
Q Consensus 2366 s~--~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~T-Gk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~ 2440 (2548)
.+ .+.+++|+|+ +..+++|+.||.|++||++ + ++.+..+.. .......+.++|++.+ +++.
T Consensus 173 ~~~~~~~~~~~~~~-------~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~ 238 (369)
T 3zwl_B 173 EGLDAATVAGWSTK-------GKYIIAGHKDGKISKYDVS---NNYEYVDSIDL----HEKSISDMQFSPDLTYFITSSR 238 (369)
T ss_dssp TTCCCEEEEEECGG-------GCEEEEEETTSEEEEEETT---TTTEEEEEEEC----CSSCEEEEEECTTSSEEEEEET
T ss_pred cCccceeEEEEcCC-------CCEEEEEcCCCEEEEEECC---CCcEeEEEEec----CCCceeEEEECCCCCEEEEecC
Confidence 76 9999999998 7899999999999999954 3 455544421 1223556789999987 5677
Q ss_pred CCCceEEEccc-------CCCCCEEEEEEeCCCCEEEEEeCCC--------------cEEEEECCCCcEEEEeccccccc
Q 000054 2441 DQNGMLWYIPK-------AHLGSVTRISTVPNTSLFLTGSKDG--------------DVKLWDAKAAQLVYHWSKLHERH 2499 (2548)
Q Consensus 2441 D~sv~Iwdi~~-------gH~~~VtsLafSPdG~~LaSGS~DG--------------tIrIWDl~Tgell~tL~~~Hs~h 2499 (2548)
++.+++|++.. .+...+.+++|+|+++++++++.++ .+++||..+++.+..+
T Consensus 239 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~------- 311 (369)
T 3zwl_B 239 DTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV------- 311 (369)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE-------
T ss_pred CceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe-------
Confidence 88999999643 2678899999999999999999998 8999999999998876
Q ss_pred ccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2500 TFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2500 sfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+ .|.+++|+|++ |++|+.||+|++|+++++.
T Consensus 312 -------~~~~~----~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 312 -------QGHFG----PLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp -------ECCSS----CEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred -------ecccC----cEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 56664 35777999999 8999999999999998653
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.94 E-value=1.2e-25 Score=269.99 Aligned_cols=231 Identities=16% Similarity=0.217 Sum_probs=192.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVr 2347 (2548)
|.+.|++++|+|+++++++|+.||+|++||++++... ..+..|...|.+ |+++++++++|+ .|++|+
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~s~s---~d~~i~ 80 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--------RSIQVTETPVRAGKFIARKNWIIVGS---DDFRIR 80 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--------EEEECCSSCEEEEEEEGGGTEEEEEE---TTSEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee--------EEeeccCCcEEEEEEeCCCCEEEEEC---CCCEEE
Confidence 5689999999999999999999999999999887533 236677777764 899999999996 899999
Q ss_pred EEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCcee-eeecCCCCCCCcccc
Q 000054 2348 VWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTK-KHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l-~tl~~~~~~s~~~~~ 2426 (2548)
+||+.+ ++.+..+.+|.+.|++++|+|+ +++|++|+.||+|++||++ ++... ..+. .+ .....
T Consensus 81 vwd~~~--~~~~~~~~~h~~~v~~~~~~~~-------~~~l~sgs~D~~v~lWd~~---~~~~~~~~~~---~h-~~~v~ 144 (304)
T 2ynn_A 81 VFNYNT--GEKVVDFEAHPDYIRSIAVHPT-------KPYVLSGSDDLTVKLWNWE---NNWALEQTFE---GH-EHFVM 144 (304)
T ss_dssp EEETTT--CCEEEEEECCSSCEEEEEECSS-------SSEEEEEETTSCEEEEEGG---GTTEEEEEEC---CC-CSCEE
T ss_pred EEECCC--CcEEEEEeCCCCcEEEEEEcCC-------CCEEEEECCCCeEEEEECC---CCcchhhhhc---cc-CCcEE
Confidence 999986 6788899999999999999998 7899999999999999954 44333 3331 11 22345
Q ss_pred ccccCCC-CCC--ccCCCCCceEEEcc---------cCCCCCEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2427 AHADAQT-GSG--SKPGDQNGMLWYIP---------KAHLGSVTRISTVP--NTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2427 ~vafSpd-Gk~--v~s~D~sv~Iwdi~---------~gH~~~VtsLafSP--dG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.++|+|+ +.. .++.|+.+++|++. .+|...|..+.|+| ++.+|++|+.||+|++||+++++++.++
T Consensus 145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~ 224 (304)
T 2ynn_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (304)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence 6788884 554 67889999999963 35678899999987 6789999999999999999999998877
Q ss_pred cccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2493 SKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2493 ~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+. |..++|+|++ |+||+.||+|++||+.++.
T Consensus 225 --------------~~h~~~----v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 225 --------------EGHMSN----VSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp --------------ECCSSC----EEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred --------------CCCCCC----EEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 677754 4667999999 8999999999999998764
No 28
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=5.8e-25 Score=260.30 Aligned_cols=267 Identities=20% Similarity=0.209 Sum_probs=194.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCcee-EEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l-~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrVW 2298 (2548)
|.+++|+|++++|++|+.||.|++||+.++... .....+. .|.+.|++++|+| ++++|++|+.||+|++|
T Consensus 14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-------AHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-------CCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-------cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 799999999999999999999999999976422 1111122 2558999999999 69999999999999999
Q ss_pred EcCCCccccc-ccCccceeccCCcccEEE--EcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeee----------
Q 000054 2299 QLEVGGRSNV-RPMESCLCFSSHAMDVSY--ITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT---------- 2363 (2548)
Q Consensus 2299 Dl~tgk~i~i-~p~~s~~t~~gH~~~V~a--fSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~---------- 2363 (2548)
|++++..... ........+.+|...|.+ |+|+ ++++++++ .||.|++||++.. +.+..+.
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG---NDGILRLYDALEP--SDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTCEEEEEECSST--TCTTCCEEEEEEESCSC
T ss_pred ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec---CCCcEEEecCCCh--HHhcccccccccccccc
Confidence 9987642110 011223456788888874 8898 99999987 8999999999863 3332222
Q ss_pred ---ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCC
Q 000054 2364 ---CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPG 2440 (2548)
Q Consensus 2364 ---gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~ 2440 (2548)
.|...+.++.|+|+. ..+..+++++.|+.+.+|+.+ .++..
T Consensus 162 ~~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~~~~---~~~~~----------------------------- 205 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSR----FSPEKLAVSALEQAIIYQRGK---DGKLH----------------------------- 205 (351)
T ss_dssp CCSSCSCCCEEEEECCCS----SSCCEEEEEETTEEEEEEECT---TSCEE-----------------------------
T ss_pred ccCCcccceeEEEeccCC----CCCcEEEEecCCCcEEEEccC---CCcee-----------------------------
Confidence 688899999999972 126799999999999888732 23321
Q ss_pred CCCceEEEcccCCCCCEEEEEEeCCC----CEEEEEeCCCcEEEEECCCCcEEEEecccccc------------------
Q 000054 2441 DQNGMLWYIPKAHLGSVTRISTVPNT----SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHER------------------ 2498 (2548)
Q Consensus 2441 D~sv~Iwdi~~gH~~~VtsLafSPdG----~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~------------------ 2498 (2548)
....+.+|...|++++|+|++ ++|++|+.||.|++||++++............
T Consensus 206 -----~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (351)
T 3f3f_A 206 -----VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRS 280 (351)
T ss_dssp -----EEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------
T ss_pred -----eeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccc
Confidence 111236799999999999998 89999999999999999875322111000000
Q ss_pred --------------cccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2499 --------------HTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2499 --------------hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
..-....+.+|.+ .|++++|+|++ |++|+.||+|++|++.++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 281 DSNTEEKAELQSNLQVELLSEHDDHNG----EVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ----------CCSEEEEEEEEECTTSS----CEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred ccccceeeeecccccccEEEEEecccc----cEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 0000112467764 45778999999 9999999999999998763
No 29
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=1.5e-26 Score=286.38 Aligned_cols=282 Identities=10% Similarity=0.068 Sum_probs=200.1
Q ss_pred EEEEEEcCCCCEEEEEECCC-------eEEEEEcCCCcee-----EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNT-------HIYLWEFGKDKAT-----ATYGVLPAANVPPPYALASISALQFDHYGHRFASA 2289 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DG-------sVrLWDl~tg~~l-----~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG 2289 (2548)
|.+++|+|+|++|++|+.|. .|++|++..+... ...... ....|...|.+++++ ++.+++|
T Consensus 17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~-----~l~~~~~~v~s~~~~--~~~~~~g 89 (365)
T 4h5i_A 17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEF-----ALEDNDDSPTAIDAS--KGIILVG 89 (365)
T ss_dssp EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEE-----ECCTTSCCCCEEEEE--TTEEEEE
T ss_pred EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEE-----EccCCCCceEEEEeC--CCEEEEE
Confidence 79999999999999997644 5999999765321 111110 122355788888765 5566665
Q ss_pred -----------eCCCcEEEEEcCCCcccccccCccc--eeccCCcc--cEEEEcCCCCEEEEEeccCCCCeEEEEECCCC
Q 000054 2290 -----------ALDGTVCTWQLEVGGRSNVRPMESC--LCFSSHAM--DVSYITSSGSVIAAAGHSSNGINVVVWDTLAP 2354 (2548)
Q Consensus 2290 -----------S~DGtVrVWDl~tgk~i~i~p~~s~--~t~~gH~~--~V~afSpdGslLATgG~SS~DGtVrIWDl~t~ 2354 (2548)
+.|+++++|++....... ...... .....+.. .+.+|+|||+++++++. +.|++|+|||+.+
T Consensus 90 ~~~~~~~l~s~~~d~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~-~~d~~i~iwd~~~- 166 (365)
T 4h5i_A 90 CNENSTKITQGKGNKHLRKFKYDKVNDQL-EFLTSVDFDASTNADDYTKLVYISREGTVAAIASS-KVPAIMRIIDPSD- 166 (365)
T ss_dssp CCCCHHHHHHTSCCCCEEEEEEETTTTEE-EEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEES-CSSCEEEEEETTT-
T ss_pred ECCCccEEEEecCCCcEEEEEecCCCceE-EEeeeeceeecCCcccCEEEEEEcCCCCEEEEEEC-CCCCEEEEeECCC-
Confidence 457789999987653211 100001 11222333 34569999999887653 3799999999986
Q ss_pred CCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCC
Q 000054 2355 PTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTG 2434 (2548)
Q Consensus 2355 ~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdG 2434 (2548)
.+.+..+. |.+.|.+++|+|+ +.++++++.| .+++|+ ..+++.+.... ..........+.|+|+|
T Consensus 167 -~~~~~~~~-~~~~V~~v~fspd-------g~~l~s~s~~-~~~~~~---~~~~~~~~~~~--~~~~~~~v~~v~fspdg 231 (365)
T 4h5i_A 167 -LTEKFEIE-TRGEVKDLHFSTD-------GKVVAYITGS-SLEVIS---TVTGSCIARKT--DFDKNWSLSKINFIADD 231 (365)
T ss_dssp -TEEEEEEE-CSSCCCEEEECTT-------SSEEEEECSS-CEEEEE---TTTCCEEEEEC--CCCTTEEEEEEEEEETT
T ss_pred -CcEEEEeC-CCCceEEEEEccC-------CceEEeccce-eEEEEE---eccCcceeeee--cCCCCCCEEEEEEcCCC
Confidence 56666664 7889999999998 7899998855 566666 34455544321 11122335678899999
Q ss_pred CC--ccCCCC----CceEEEc------------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000054 2435 SG--SKPGDQ----NGMLWYI------------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2435 k~--v~s~D~----sv~Iwdi------------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
.. +++.++ .+++|++ ..+|...|++++|+|+|++||+|+.||+|+|||+++++++.++
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~---- 307 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF---- 307 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE----
T ss_pred CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe----
Confidence 87 333333 3455653 3478899999999999999999999999999999999999877
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+.+|.+. |++++|+||| |||||.|++||||+++.+.
T Consensus 308 ---------~~gH~~~----V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 308 ---------KQAHSFA----ITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp ---------TTSSSSC----EEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred ---------cCcccCC----EEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 4788754 5778999999 9999999999999998653
No 30
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=3.1e-25 Score=266.56 Aligned_cols=285 Identities=15% Similarity=0.205 Sum_probs=210.5
Q ss_pred EEEEEEcCCCCEEE-EEEC---CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC---CCEEEEEeCCCc
Q 000054 2222 TRAFSSHPLRPFFL-VGSS---NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY---GHRFASAALDGT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG~~LA-SGS~---DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd---G~~LaSGS~DGt 2294 (2548)
+.+++|+|+++.++ +|+. ||.|++||+.+++....... .|.+.|++++|+|+ +++|++|+.||.
T Consensus 21 v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 21 VFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI---------EKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE---------EESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred eEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee---------cccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 79999999997555 5665 99999999998876544321 25589999999998 799999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEEE--------cCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYI--------TSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~af--------SpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
|++||+.+++. ....+.+|...|.++ +++++++++++ .|+.|++||++.. ...+..+..|.
T Consensus 92 i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~---~d~~i~vwd~~~~-~~~~~~~~~~~ 160 (357)
T 3i2n_A 92 LHIWNLEAPEM-------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS---RDGTVKVWDPRQK-DDPVANMEPVQ 160 (357)
T ss_dssp EEEECTTSCSS-------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE---TTSCEEEECTTSC-SSCSEEECCCT
T ss_pred EEEEeCCCCCc-------cEEEEEecccceEEEeeccccccCCCccEEEEEe---CCCeEEEEeCCCC-CCcceeccccC
Confidence 99999987751 123467888877753 78999999986 8999999999863 23667776665
Q ss_pred C----CeEEEEE----ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCC---CCC
Q 000054 2367 G----GARSISV----FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ---TGS 2435 (2548)
Q Consensus 2367 ~----~VtSLaf----sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp---dGk 2435 (2548)
+ .++++.| +|+ +.++++|+.||.|++||++ +++...... .......+.++| ++.
T Consensus 161 ~~~~~~v~~~~~~~~~~~~-------~~~l~~~~~d~~i~i~d~~---~~~~~~~~~-----~~~~v~~~~~~~~~~~~~ 225 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQE-------ERVVCAGYDNGDIKLFDLR---NMALRWETN-----IKNGVCSLEFDRKDISMN 225 (357)
T ss_dssp TSCCCCEEEEEEECCCC-C-------CCEEEEEETTSEEEEEETT---TTEEEEEEE-----CSSCEEEEEESCSSSSCC
T ss_pred CCCCCceEEEEEEeccCCC-------CCEEEEEccCCeEEEEECc---cCceeeecC-----CCCceEEEEcCCCCCCCC
Confidence 5 8999994 555 7899999999999999954 455433321 112356678888 777
Q ss_pred C--ccCCCCCceEEEcc--------c-----CCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEecccc---
Q 000054 2436 G--SKPGDQNGMLWYIP--------K-----AHLGSVTRISTVPNTS-LFLTGSKDGDVKLWDAKAAQLVYHWSKLH--- 2496 (2548)
Q Consensus 2436 ~--v~s~D~sv~Iwdi~--------~-----gH~~~VtsLafSPdG~-~LaSGS~DGtIrIWDl~Tgell~tL~~~H--- 2496 (2548)
. +++.++.+++|++. . +|...|++++|+|+++ +|++|+.||.|++||++++..........
T Consensus 226 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~ 305 (357)
T 3i2n_A 226 KLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM 305 (357)
T ss_dssp EEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCC
T ss_pred EEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcc
Confidence 6 67778899999842 2 7999999999999998 89999999999999998654322110000
Q ss_pred --cccccccCcccCCCCceeecEEEEEEcCCe--EE-EEECCCcEEEEECCCCc
Q 000054 2497 --ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL-SCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2497 --s~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La-SGS~DGtIrIWDL~sg~ 2545 (2548)
.+.......+.+|.+ .|++++|+|+| |+ +|+.||.|++||+.+..
T Consensus 306 ~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 306 GVAGSVSLLQNVTLSTQ----PISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCCCEEEEEEEEECCSS----CEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ccccccceeeccccCCC----CeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 000000112366764 45778999999 77 89999999999998753
No 31
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=2.5e-25 Score=273.34 Aligned_cols=271 Identities=13% Similarity=0.121 Sum_probs=210.1
Q ss_pred EEEEEEcCCC-CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG-~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWD 2299 (2548)
+.+++|+|++ ++|++|+.||.|+|||+.+++....+. ..+|.+.|.+++|+| ++++|++|+.||.|++||
T Consensus 76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ--------GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC--------CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee--------cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 7999999999 999999999999999999888776653 224669999999999 789999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+++.. .. ......+|...|.+ ++|+++++++++ .|+.|++||++ .+.+..+.+|.+.|.+++|+|+
T Consensus 148 ~~~~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~---~~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 148 FSGSV-IQ-----VFAKTDSWDYWYCCVDVSVSRQMLATGD---STGRLLLLGLD---GHEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp TTSCE-EE-----EEECCCCSSCCEEEEEEETTTTEEEEEE---TTSEEEEEETT---SCEEEEEECSSSCEEEEEECSS
T ss_pred CCCCc-eE-----EEeccCCCCCCeEEEEECCCCCEEEEEC---CCCCEEEEECC---CCEEEEeccCCCcEEEEEECCC
Confidence 98532 11 11223444566654 899999999987 89999999994 5688889999999999999999
Q ss_pred CCCCCCCCC-EEEEEeCCCcEEEEeCCcccc-CceeeeecCCCCCCCccccccccCC-CCCC--ccCCCCCceEEEcccC
Q 000054 2378 DLGSGSVSP-LIVTGGKGGDVGIHDFRYIAT-GKTKKHKHSDRGGSSINTCAHADAQ-TGSG--SKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2378 dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~T-Gk~l~tl~~~~~~s~~~~~~vafSp-dGk~--v~s~D~sv~Iwdi~~g 2452 (2548)
++ ++++|+.||.|++||++.... +..+..+. .......+.|+| +|.. +++.|+.+++|++..+
T Consensus 216 -------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 216 -------CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-----HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp -------CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-----CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred -------CCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-----CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence 55 999999999999999764222 44444431 123456788999 8887 6677889999996321
Q ss_pred --------C-------C----------CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCccc
Q 000054 2453 --------H-------L----------GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2453 --------H-------~----------~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~ 2507 (2548)
| . +.+..++|+|++++ +|+.||.|++||+.+++++.++.. .
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~------------~ 349 (383)
T 3ei3_B 284 SKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD------------P 349 (383)
T ss_dssp TSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB------------T
T ss_pred ccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC------------C
Confidence 2 2 23444666777766 778999999999999999987721 1
Q ss_pred CCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000054 2508 GFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
+|.+ .+..++|+|+| |++|+ ||+|++||+++
T Consensus 350 ~~~~----~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 350 NAAG----IISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TBCS----CCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCCc----eEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 1333 24556999999 77776 99999999975
No 32
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.7e-26 Score=279.81 Aligned_cols=282 Identities=15% Similarity=0.262 Sum_probs=221.2
Q ss_pred EEEEEEcCCCC-EEEEE----------ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000054 2222 TRAFSSHPLRP-FFLVG----------SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASG----------S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
+.+++|+|+++ ++++| +.|+.|+|||+.++.....+ ....|...|++++|+|++++|++|+
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~--------~~~~~~~~v~~~~~s~~~~~l~~~~ 86 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI--------ASLQVDSKFNDLDWSHNNKIIAGAL 86 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS--------CCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE--------EEEecCCceEEEEECCCCCeEEEEc
Confidence 57889999987 99999 89999999999987643221 1223568999999999999999999
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCC-CCEEEEEeccCCCCeEEEEECCCCCC-----C--cce
Q 000054 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS-GSVIAAAGHSSNGINVVVWDTLAPPT-----S--SRA 2360 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd-GslLATgG~SS~DGtVrIWDl~t~~~-----k--~v~ 2360 (2548)
.||.|++||+.+.... ......+.+|...|.+ |+|+ ++++++++ .|+.|++||+..... . ...
T Consensus 87 ~dg~v~vw~~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~ 159 (416)
T 2pm9_A 87 DNGSLELYSTNEANNA----INSMARFSNHSSSVKTVKFNAKQDNVLASGG---NNGEIFIWDMNKCTESPSNYTPLTPG 159 (416)
T ss_dssp SSSCEEEECCSSTTSC----CCEEEECCCSSSCCCEEEECSSSTTBEEEEC---SSSCEEBCBTTTTSSCTTTCCCBCCC
T ss_pred cCCeEEEeeccccccc----ccchhhccCCccceEEEEEcCCCCCEEEEEc---CCCeEEEEECCCCccccccccccccc
Confidence 9999999999863110 0123446778887764 8898 88999986 899999999986421 1 123
Q ss_pred eeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC--CCccccccccCCCCC-C-
Q 000054 2361 SITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG--SSINTCAHADAQTGS-G- 2436 (2548)
Q Consensus 2361 sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~--s~~~~~~vafSpdGk-~- 2436 (2548)
...+|...|.+++|+|++ +.++++|+.||.|++||+ .+++.+..+...... .......+.++|++. .
T Consensus 160 ~~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~v~iwd~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 160 QSMSSVDEVISLAWNQSL------AHVFASAGSSNFASIWDL---KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp CSCCSSCCCCEEEECSSC------TTEEEEESSSSCEEEEET---TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred cccCCCCCeeEEEeCCCC------CcEEEEEcCCCCEEEEEC---CCCCcceEEeccccccccCCceEEEEECCCCCCEE
Confidence 346799999999999984 679999999999999994 456666665222110 034456788999974 3
Q ss_pred -ccCCCC---CceEEEcc---------c-CCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccccccccc
Q 000054 2437 -SKPGDQ---NGMLWYIP---------K-AHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTF 2501 (2548)
Q Consensus 2437 -v~s~D~---sv~Iwdi~---------~-gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsf 2501 (2548)
++..++ .+++|++. . +|...|++++|+| ++++|++|+.||.|++||+++++.+.++
T Consensus 231 ~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~--------- 301 (416)
T 2pm9_A 231 ATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF--------- 301 (416)
T ss_dssp EEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE---------
T ss_pred EEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee---------
Confidence 556666 89999953 3 6899999999999 9999999999999999999999998877
Q ss_pred ccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCCc
Q 000054 2502 LQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2502 l~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+.| .+++|+|++ +++++.||+|++|++.++.
T Consensus 302 -----~~~~~~v----~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 302 -----PARGNWC----FKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp -----ECSSSCC----CCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred -----cCCCCce----EEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 5666544 566999987 8899999999999998764
No 33
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=2.5e-26 Score=277.77 Aligned_cols=252 Identities=17% Similarity=0.199 Sum_probs=190.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCce--eEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA--TATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~--l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrV 2297 (2548)
|.+++|+|+|++||+|+.|++|+|||+.++.. +..+. +|.+.|++++|++ ++++|++|+.||+|++
T Consensus 16 V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~----------gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR----------GHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp EEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE----------CCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred EEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc----------CCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 79999999999999999999999999988753 33432 3568999999986 4899999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccEE--EEcCC--CCEEEEEeccCCCCeEEEEECCCCCC-CcceeeeccCCCeEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSS--GSVIAAAGHSSNGINVVVWDTLAPPT-SSRASITCHEGGARSI 2372 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpd--GslLATgG~SS~DGtVrIWDl~t~~~-k~v~sl~gHs~~VtSL 2372 (2548)
||++++... ....+.+|...|. +|+|+ +.++++++ .|+.|++||++.... .....+.+|...|.++
T Consensus 86 Wd~~~~~~~------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs---~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 86 WREENGTWE------KSHEHAGHDSSVNSVCWAPHDYGLILACGS---SDGAISLLTYTGEGQWEVKKINNAHTIGCNAV 156 (316)
T ss_dssp ECCSSSCCC------EEEEECCCSSCCCEEEECCTTTCSCEEEEC---SSSCEEEEEECSSSCEEECCBTTSSSSCBCCC
T ss_pred EECCCCcce------EEEEccCCCCceEEEEECCCCCCcEEEEEc---CCCCEEEEecCCCCCcceeeeeccccCCcceE
Confidence 999876321 1234677887776 48887 78999986 899999999975311 1245667899999999
Q ss_pred EEccCCCCC----------CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCC
Q 000054 2373 SVFDNDLGS----------GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQ 2442 (2548)
Q Consensus 2373 afsP~dlg~----------gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~ 2442 (2548)
+|+|+.... ...+.+|++|+.||+|++||++.....+.+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~----------------------------- 207 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK----------------------------- 207 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC-----------------------------
T ss_pred EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeee-----------------------------
Confidence 999872100 00136899999999999999531000012222
Q ss_pred CceEEEcccCCCCCEEEEEEeCCC----CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEE
Q 000054 2443 NGMLWYIPKAHLGSVTRISTVPNT----SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVT 2518 (2548)
Q Consensus 2443 sv~Iwdi~~gH~~~VtsLafSPdG----~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vt 2518 (2548)
+.+|.+.|++++|+|++ .+|++|+.||+|++||+.+...-. . . ...+.+|.+ .|+
T Consensus 208 -------l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~-~----~-----~~~~~~~~~----~v~ 266 (316)
T 3bg1_A 208 -------LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT-W----S-----PKLLHKFND----VVW 266 (316)
T ss_dssp -------CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC-C----B-----CCEEEECSS----CEE
T ss_pred -------cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc-h----h-----hhhhhcCCC----cEE
Confidence 37899999999999986 899999999999999997631100 0 0 001234543 467
Q ss_pred EEEEcCCe--EEEEECCCcEEEEECC
Q 000054 2519 DIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2519 sLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
+++|+|+| |++|+.||+|++|+..
T Consensus 267 ~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 267 HVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999999 9999999999999976
No 34
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.94 E-value=5.8e-25 Score=283.94 Aligned_cols=263 Identities=21% Similarity=0.283 Sum_probs=218.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+++++++++.|+.|++||.. ++....+. +|.+.|++++|+|+++.+++++.||+|++||..
T Consensus 265 v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~----------~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~ 333 (577)
T 2ymu_A 265 VNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLT----------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEEC----------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEe----------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 6889999999999999999999999964 44454442 255899999999999999999999999999986
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
... ...+.+|...+.+ ++|+++.+++++ .|+.|++||.. ++.+..+.+|...|++++|+|+
T Consensus 334 ~~~---------~~~~~~~~~~v~~~~~s~~g~~l~~~~---~dg~v~~~~~~---~~~~~~~~~~~~~v~~~~~s~d-- 396 (577)
T 2ymu_A 334 GQH---------LQTLTGHSSSVWGVAFSPDGQTIASAS---DDKTVKLWNRN---GQLLQTLTGHSSSVRGVAFSPD-- 396 (577)
T ss_dssp SCE---------EEEECCCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETT---CCEEEEEECCSSCEEEEEECTT--
T ss_pred CCe---------eEEEeCCCCCEEEEEECCCCCEEEEEe---CCCEEEEEcCC---CCEEEEecCCCCCeEEEEECCC--
Confidence 542 1235678777764 899999999986 89999999964 5678889999999999999998
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc-------c
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI-------P 2450 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi-------~ 2450 (2548)
+++|++|+.|+.|++||. +++.+..+... ......++++|++++ +++.|+.+++|+. +
T Consensus 397 -----g~~l~~~~~d~~v~~~~~----~~~~~~~~~~~----~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~ 463 (577)
T 2ymu_A 397 -----GQTIASASDDKTVKLWNR----NGQLLQTLTGH----SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTL 463 (577)
T ss_dssp -----SSCEEEEETTSEEEEECT----TCCEEEEEECC----SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEE
T ss_pred -----CCEEEEEeCCCEEEEEeC----CCCEEEEecCC----CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEE
Confidence 789999999999999994 34555554221 123456789999988 5677888999984 3
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL 2528 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La 2528 (2548)
.+|...|++++|+|++++|++++.|++|++||. +++++.++ .+|.+. |++++|+|+| |+
T Consensus 464 ~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~--------------~~h~~~----v~~l~~s~dg~~l~ 524 (577)
T 2ymu_A 464 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL--------------TGHSSS----VRGVAFSPDGQTIA 524 (577)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE--------------ECCSSC----EEEEEECTTSSCEE
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE--------------eCCCCC----EEEEEEcCCCCEEE
Confidence 579999999999999999999999999999995 67887766 577654 5678999999 99
Q ss_pred EEECCCcEEEEECCCC
Q 000054 2529 SCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2529 SGS~DGtIrIWDL~sg 2544 (2548)
+++.||+|++||.+..
T Consensus 525 s~~~dg~v~lwd~~~~ 540 (577)
T 2ymu_A 525 SASDDKTVKLWNRNGQ 540 (577)
T ss_dssp EEETTSEEEEECTTSC
T ss_pred EEECcCEEEEEeCCCC
Confidence 9999999999997654
No 35
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.94 E-value=1.2e-25 Score=278.35 Aligned_cols=270 Identities=13% Similarity=0.176 Sum_probs=214.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.+++|+|+|++|++|+.||.|++||..+++....+. .| ..+....|++++++|++|+.||.|++||+++
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK----------RA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC----------SC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe----------cC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 356788999999999999999999988765433221 12 4455557899999999999999999999987
Q ss_pred CcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
+... ..+.+|...|.+ |+|+++++++++ .|+.|++||+.. .+.+..+.+|.+.|.+++|+|+
T Consensus 129 ~~~~--------~~~~~h~~~v~~~~~~~~~~~l~s~s---~d~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~--- 192 (420)
T 3vl1_A 129 NLQR--------EIDQAHVSEITKLKFFPSGEALISSS---QDMQLKIWSVKD--GSNPRTLIGHRATVTDIAIIDR--- 192 (420)
T ss_dssp CEEE--------EETTSSSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTT--CCCCEEEECCSSCEEEEEEETT---
T ss_pred ccee--------eecccccCccEEEEECCCCCEEEEEe---CCCeEEEEeCCC--CcCceEEcCCCCcEEEEEEcCC---
Confidence 6532 235688888875 899999999986 899999999986 6778889999999999999998
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC--------------------CCccccccccCCCCCC--cc
Q 000054 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG--------------------SSINTCAHADAQTGSG--SK 2438 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~--------------------s~~~~~~vafSpdGk~--v~ 2438 (2548)
+.+|++|+.||+|++||+ .+++.+..+...... .......+.++|+|++ ++
T Consensus 193 ----~~~l~s~~~d~~v~iwd~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (420)
T 3vl1_A 193 ----GRNVLSASLDGTIRLWEC---GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG 265 (420)
T ss_dssp ----TTEEEEEETTSCEEEEET---TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE
T ss_pred ----CCEEEEEcCCCcEEEeEC---CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE
Confidence 789999999999999994 456666665321111 1133456788999987 66
Q ss_pred CCCCCceEEEcc---------cCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCcE-EEEecccccccccccCccc
Q 000054 2439 PGDQNGMLWYIP---------KAHLGSVTRISTVPNTS-LFLTGSKDGDVKLWDAKAAQL-VYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2439 s~D~sv~Iwdi~---------~gH~~~VtsLafSPdG~-~LaSGS~DGtIrIWDl~Tgel-l~tL~~~Hs~hsfl~~tl~ 2507 (2548)
..++.+++|++. .+|...|++++|+|+++ +|++|+.||.|++||+++++. +..+ .
T Consensus 266 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~--------------~ 331 (420)
T 3vl1_A 266 HVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF--------------L 331 (420)
T ss_dssp ETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE--------------E
T ss_pred cCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh--------------h
Confidence 788899999853 35888999999999998 999999999999999998753 4444 3
Q ss_pred C-CCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2508 G-FGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2508 G-H~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
+ |.. .|..+.+.+.. |++++.||+|++|++.+.
T Consensus 332 ~~~~~----~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 332 INEGT----PINNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ESTTS----CEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred ccCCC----CceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 3 333 35566666555 899999999999998763
No 36
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.9e-25 Score=271.13 Aligned_cols=279 Identities=13% Similarity=0.174 Sum_probs=212.3
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEc----CCCc------eeEEEecc-CCCCCCCCCCCCCeEEEEEccCCCEEEEE
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEF----GKDK------ATATYGVL-PAANVPPPYALASISALQFDHYGHRFASA 2289 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl----~tg~------~l~t~~~l-~ghs~~~~~H~~~VtsVaFSPdG~~LaSG 2289 (2548)
+.+++|+|+|+ +|++|+.||.|++||+ .+++ ....+... .++ ....+|.+.|++++|+|++++|++|
T Consensus 48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS-ASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-------CBCEEEEEECTTSSEEEEE
T ss_pred eEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccc-ccccCCCCceEEEEEcCCCCEEEEE
Confidence 58999999999 9999999999999999 8877 34444321 111 0122356799999999999999999
Q ss_pred eCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCC------------
Q 000054 2290 ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPP------------ 2355 (2548)
Q Consensus 2290 S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~------------ 2355 (2548)
+.||.|++||. +++. ...+.+|...|.+ |+|+++++++++ .|+.|++||+....
T Consensus 127 ~~dg~i~i~~~-~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 127 VENGELRLWNK-TGAL--------LNVLNFHRAPIVSVKWNKDGTHIISMD---VENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp ETTSCEEEEET-TSCE--------EEEECCCCSCEEEEEECTTSSEEEEEE---TTCCEEEEETTTTEEEEEECCC----
T ss_pred eCCCeEEEEeC-CCCe--------eeeccCCCccEEEEEECCCCCEEEEEe---cCCeEEEEECCCCcEEEEeeccccCc
Confidence 99999999993 3332 2336678887764 899999999986 89999999986421
Q ss_pred ------------------------------------------CCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC
Q 000054 2356 ------------------------------------------TSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGK 2393 (2548)
Q Consensus 2356 ------------------------------------------~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~ 2393 (2548)
.+.+..+.+|...|.+++|+|+ +.+|++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~l~~~~~ 267 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT-------NKLLLSASD 267 (425)
T ss_dssp -----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT-------TTEEEEEET
T ss_pred cceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC-------CCEEEEEcC
Confidence 1223345578899999999998 779999999
Q ss_pred CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEcc--------cCCCCCEEEEEEeC
Q 000054 2394 GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYIP--------KAHLGSVTRISTVP 2464 (2548)
Q Consensus 2394 DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~--------~gH~~~VtsLafSP 2464 (2548)
||.|++||++ +++.+..+.. .......+.++|++.+ +++.++.+++|++. ..|...|.+++|+|
T Consensus 268 d~~i~i~d~~---~~~~~~~~~~----~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 268 DGTLRIWHGG---NGNSQNCFYG----HSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ 340 (425)
T ss_dssp TSCEEEECSS---SBSCSEEECC----CSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT
T ss_pred CCEEEEEECC---CCccceEecC----CCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC
Confidence 9999999954 4555555421 1223466788898844 67788899999953 46889999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc--------------------EEEEecccccccccccCcccCCCCceeecEEEEEEcC
Q 000054 2465 NTSLFLTGSKDGDVKLWDAKAAQ--------------------LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~Tge--------------------ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
++++|++|+.||.|++||+.+++ .+..+ .+|... ..|++++|+|
T Consensus 341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~--~~v~~~~~s~ 404 (425)
T 1r5m_A 341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY--------------QSSQDN--DYIFDLSWNC 404 (425)
T ss_dssp TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE--------------CCTTCC--CCEEEEEECT
T ss_pred CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh--------------cCcccC--CceEEEEccC
Confidence 99999999999999999999877 55544 556430 0467889999
Q ss_pred Ce--EEEEECCCcEEEEECCC
Q 000054 2525 RG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2525 dG--LaSGS~DGtIrIWDL~s 2543 (2548)
++ |++++.||.|++|+++.
T Consensus 405 ~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 405 AGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp TSSEEEEEESSSCCEEEECCC
T ss_pred CCceEEEEecCceEEEEeecC
Confidence 99 88999999999999863
No 37
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.94 E-value=2.4e-25 Score=279.43 Aligned_cols=232 Identities=22% Similarity=0.354 Sum_probs=199.5
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
+|.+.|++++|+|++.++++|+.||+|++||+.+++.. ..+.+|...|.+ |+|+++++++|+ .|++|
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~--------~~l~~h~~~V~~v~~~~~~~~l~sgs---~D~~i 174 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--------RTLKGHTDSVQDISFDHSGKLLASCS---ADMTI 174 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC--------EEECCCSSCEEEEEECTTSSEEEEEE---TTSCC
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE--------EEEeccCCcEEEEEEcCCCCEEEEEe---CCCeE
Confidence 36699999999999999999999999999999987532 347889988874 899999999997 89999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
++||+.. .+++..+.+|.+.|.+++|+|+ +.+|++|+.||+|++|| +.++.++..+... .....
T Consensus 175 ~iwd~~~--~~~~~~~~~h~~~V~~v~~~p~-------~~~l~s~s~D~~i~~wd---~~~~~~~~~~~~h----~~~v~ 238 (410)
T 1vyh_C 175 KLWDFQG--FECIRTMHGHDHNVSSVSIMPN-------GDHIVSASRDKTIKMWE---VQTGYCVKTFTGH----REWVR 238 (410)
T ss_dssp CEEETTS--SCEEECCCCCSSCEEEEEECSS-------SSEEEEEETTSEEEEEE---TTTCCEEEEEECC----SSCEE
T ss_pred EEEeCCC--CceeEEEcCCCCCEEEEEEeCC-------CCEEEEEeCCCeEEEEE---CCCCcEEEEEeCC----CccEE
Confidence 9999976 6788889999999999999998 78999999999999999 5567777776321 22345
Q ss_pred ccccCCCCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCC--------------------CCEEEEEeCCC
Q 000054 2427 AHADAQTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPN--------------------TSLFLTGSKDG 2476 (2548)
Q Consensus 2427 ~vafSpdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPd--------------------G~~LaSGS~DG 2476 (2548)
.+.++++|.+ .++.|+.+++|++ +.+|...|.+++|+|+ |.+|++|+.||
T Consensus 239 ~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 6788999987 6778899999985 3579999999999996 67999999999
Q ss_pred cEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2477 DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2477 tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+|++||+++++++.++ .+|.+. |.+++|+|+| |++|+.||+|++||+.++.
T Consensus 319 ~i~iwd~~~~~~~~~~--------------~~h~~~----v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 319 TIKMWDVSTGMCLMTL--------------VGHDNW----VRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp EEEEEETTTTEEEEEE--------------ECCSSC----EEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred eEEEEECCCCceEEEE--------------ECCCCc----EEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 9999999999998876 577754 4677999999 9999999999999998764
No 38
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.94 E-value=2.1e-25 Score=273.58 Aligned_cols=290 Identities=13% Similarity=0.095 Sum_probs=217.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc------eeEEEeccCCCCCCCCCCCCCeEEEEEccC----C---CEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK------ATATYGVLPAANVPPPYALASISALQFDHY----G---HRFAS 2288 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~------~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd----G---~~LaS 2288 (2548)
|.+++|+| ++|++|+.||.|++||+.+++ .+..+. .|...|++++|+|+ + ++|++
T Consensus 19 i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 19 IFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF----------VHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE----------CCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred eEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe----------cCCCcEEEEEEecccccCCccccEEEE
Confidence 79999999 899999999999999999887 555553 25589999999999 9 99999
Q ss_pred EeCCCcEEEEEcCCCcccccccCccceeccCC-----cccEEE--Ec----CCCCE-EEEEeccCCCCeEEEEECCCCC-
Q 000054 2289 AALDGTVCTWQLEVGGRSNVRPMESCLCFSSH-----AMDVSY--IT----SSGSV-IAAAGHSSNGINVVVWDTLAPP- 2355 (2548)
Q Consensus 2289 GS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH-----~~~V~a--fS----pdGsl-LATgG~SS~DGtVrIWDl~t~~- 2355 (2548)
++.||.|++||+.+++... ......+..| ...|.+ |+ |+++. +++++ .||.|++||++...
T Consensus 87 ~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETK---KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD---VKGTTYIWKFHPFAD 160 (397)
T ss_dssp EETTSCEEEEEEEECTTTC---CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE---TTSCEEEEEEESSSS
T ss_pred EcCCCCEEEEEccCCcccc---cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe---CCCcEEEEeCCcccc
Confidence 9999999999998775310 0012335566 466764 88 89999 99986 89999999997510
Q ss_pred ---CCcce-----ee-------eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC
Q 000054 2356 ---TSSRA-----SI-------TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG 2420 (2548)
Q Consensus 2356 ---~k~v~-----sl-------~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~ 2420 (2548)
.+.+. .+ ..|...|.+++|+|+ + ++++|+.||.|++||+ .+++.+..+.....+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~-~l~~~~~dg~i~i~d~---~~~~~~~~~~~~~~h 229 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER-------G-LIATGFNNGTVQISEL---STLRPLYNFESQHSM 229 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT-------S-EEEEECTTSEEEEEET---TTTEEEEEEECCC--
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCC-------c-eEEEEeCCCcEEEEEC---CCCceeEEEeccccc
Confidence 13333 55 348899999999998 7 9999999999999995 456666665320001
Q ss_pred --CCccccccccCCCCCC--ccCCC---CCceEEEc--------ccC-------------CCCCEEEEEEeCCCCEEEEE
Q 000054 2421 --SSINTCAHADAQTGSG--SKPGD---QNGMLWYI--------PKA-------------HLGSVTRISTVPNTSLFLTG 2472 (2548)
Q Consensus 2421 --s~~~~~~vafSpdGk~--v~s~D---~sv~Iwdi--------~~g-------------H~~~VtsLafSPdG~~LaSG 2472 (2548)
.......+.++|++.+ +++.+ +.+++|++ +.+ |...|.+++|+|++++|++|
T Consensus 230 ~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 309 (397)
T 1sq9_A 230 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 309 (397)
T ss_dssp -CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred cccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE
Confidence 1334567889999987 55566 78999985 235 89999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEecc-----cccccccc--cCcccCCCCceeecEEEEEEcCC-----------e-EEEEECC
Q 000054 2473 SKDGDVKLWDAKAAQLVYHWSK-----LHERHTFL--QPSSRGFGGVVRAGVTDIQVVSR-----------G-FLSCGGD 2533 (2548)
Q Consensus 2473 S~DGtIrIWDl~Tgell~tL~~-----~Hs~hsfl--~~tl~GH~~~V~a~VtsLafSPd-----------G-LaSGS~D 2533 (2548)
+.||.|++||+++++.+.++.. .|.....- .....+|. ..|.+++|+|+ . |++|+.|
T Consensus 310 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d 385 (397)
T 1sq9_A 310 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE----PGVFDVKFLKKGWRSGMGADLNESLCCVCLD 385 (397)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSS----CCEEEEEEECTTTSBSTTCTTSCEEEEEETT
T ss_pred eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccC----CceeEEEeccccccccccccccceEEEecCC
Confidence 9999999999999999988841 11000000 00012234 34678899999 3 8899999
Q ss_pred CcEEEEECCCC
Q 000054 2534 GSVKLIQLEDY 2544 (2548)
Q Consensus 2534 GtIrIWDL~sg 2544 (2548)
|.|++|++++|
T Consensus 386 g~i~iw~~~~g 396 (397)
T 1sq9_A 386 RSIRWFREAGG 396 (397)
T ss_dssp TEEEEEEEEC-
T ss_pred CcEEEEEcCCC
Confidence 99999999876
No 39
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.9e-25 Score=265.87 Aligned_cols=252 Identities=21% Similarity=0.198 Sum_probs=196.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCC--CceeEEEeccCCCCCCCCCCCCCeEEEEEccC--CCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGK--DKATATYGVLPAANVPPPYALASISALQFDHY--GHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~t--g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd--G~~LaSGS~DGtVrV 2297 (2548)
|.+++|+|++++|++|+.||.|+|||+.. ++.+..+. .|.+.|++++|+++ +++|++|+.||.|++
T Consensus 14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT----------GHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC----------CCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred EEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec----------CCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 79999999999999999999999999984 44444442 25689999999977 999999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccEEE--EcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
||+++++.. ....+.+|...|.+ |+|+ +.++++++ .|+.|++||++.........+.+|...|.+++
T Consensus 84 wd~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 84 WKEENGRWS------QIAVHAVHSASVNSVQWAPHEYGPLLLVAS---SDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp EEEETTEEE------EEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred EEcCCCcee------EeeeecCCCcceEEEEeCCCCCCCEEEEec---CCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence 999877421 12336678877874 8898 89999987 89999999998753445667789999999999
Q ss_pred EccCCCC------CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000054 2374 VFDNDLG------SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2374 fsP~dlg------~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
|+|.... ....+.++++|+.||.|++||++ +++.... +.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~--------------------------------~~ 199 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN---SDAQTYV--------------------------------LE 199 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEE---TTTTEEE--------------------------------EE
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEec---CCCccee--------------------------------eE
Confidence 9994000 00016799999999999999964 2221111 11
Q ss_pred EcccCCCCCEEEEEEeCC---CCEEEEEeCCCcEEEEECCCCc---EEEEecccccccccccCcccCCCCceeecEEEEE
Q 000054 2448 YIPKAHLGSVTRISTVPN---TSLFLTGSKDGDVKLWDAKAAQ---LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2448 di~~gH~~~VtsLafSPd---G~~LaSGS~DGtIrIWDl~Tge---ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa 2521 (2548)
..+.+|...|.+++|+|+ +.+|++|+.||.|++||+++++ ....+ ...+|. ..|++++
T Consensus 200 ~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~~~----~~v~~~~ 263 (379)
T 3jrp_A 200 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL------------KEEKFP----DVLWRAS 263 (379)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEES------------SSSCCS----SCEEEEE
T ss_pred EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeee------------ccccCC----CcEEEEE
Confidence 123679999999999999 8999999999999999999864 22211 013344 3467889
Q ss_pred EcCCe--EEEEECCCcEEEEECCC
Q 000054 2522 VVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2522 fSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
|+|+| |++++.||.|++|++..
T Consensus 264 ~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 264 WSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp ECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EcCCCCEEEEecCCCcEEEEeCCC
Confidence 99999 89999999999999873
No 40
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.94 E-value=2.1e-25 Score=268.55 Aligned_cols=276 Identities=9% Similarity=0.042 Sum_probs=211.3
Q ss_pred EEEEEEcCC----CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC----CCEEEEEeCCC
Q 000054 2222 TRAFSSHPL----RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY----GHRFASAALDG 2293 (2548)
Q Consensus 2222 V~~VsfSPd----G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd----G~~LaSGS~DG 2293 (2548)
+.+++|+|+ ...+++++.++.|++||+.+++.+..+..+.. ..|.+.|++++|+|+ +++|++|+.||
T Consensus 21 v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 21 LFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD-----ADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp EEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC-----SCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred eEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc-----cCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 799999984 56777778888999999998888777765332 235688999999998 67999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceee---eccCC
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI---TCHEG 2367 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl---~gHs~ 2367 (2548)
.|++||+.+++.. ..+.+|...|.+ |+| +++++++++ .||.|++||++. .+.+..+ .+|..
T Consensus 96 ~i~v~d~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~--~~~~~~~~~~~~~~~ 162 (366)
T 3k26_A 96 IIRIINPITMQCI--------KHYVGHGNAINELKFHPRDPNLLLSVS---KDHALRLWNIQT--DTLVAIFGGVEGHRD 162 (366)
T ss_dssp EEEEECTTTCCEE--------EEEESCCSCEEEEEECSSCTTEEEEEE---TTSCEEEEETTT--TEEEEEECSTTSCSS
T ss_pred EEEEEEchhceEe--------eeecCCCCcEEEEEECCCCCCEEEEEe---CCCeEEEEEeec--CeEEEEecccccccC
Confidence 9999999877533 336678888875 888 899999987 899999999986 5666666 68999
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecC------------------------CCCCCCc
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHS------------------------DRGGSSI 2423 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~------------------------~~~~s~~ 2423 (2548)
.|.+++|+|+ +.+|++|+.||.|++||++. ++....+.. .......
T Consensus 163 ~v~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 163 EVLSADYDLL-------GEKIMSCGMDHSLKLWRINS---KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp CEEEEEECTT-------SSEEEEEETTSCEEEEESCS---HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred ceeEEEECCC-------CCEEEEecCCCCEEEEECCC---CccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 9999999998 78999999999999999653 322211100 0000112
Q ss_pred cccccccCCCCCC--ccCCCCCceEEEcc----------------------cCCCCCEEEEEEeCC--CCEEEEEeCCCc
Q 000054 2424 NTCAHADAQTGSG--SKPGDQNGMLWYIP----------------------KAHLGSVTRISTVPN--TSLFLTGSKDGD 2477 (2548)
Q Consensus 2424 ~~~~vafSpdGk~--v~s~D~sv~Iwdi~----------------------~gH~~~VtsLafSPd--G~~LaSGS~DGt 2477 (2548)
....+.++ +.+ +++.++.+++|++. .+|...|++++|+|+ +++|++|+.||.
T Consensus 233 ~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~ 310 (366)
T 3k26_A 233 YVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK 310 (366)
T ss_dssp CCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC
T ss_pred eEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc
Confidence 23344455 333 66778889999853 247778999999999 999999999999
Q ss_pred EEEEECCCCcEE----EEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000054 2478 VKLWDAKAAQLV----YHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2478 IrIWDl~Tgell----~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
|++||+.+++.. ..+ .+|.. ...|++++|+|++ |++|+.||.|++||+.+
T Consensus 311 i~vwd~~~~~~~~~~~~~~--------------~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 311 LYVWDLEVEDPHKAKCTTL--------------THHKC--GAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEECCSSSGGGCEEEEE--------------CCTTC--CSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEEEECCCCCCccccceEE--------------ccccc--CCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999999987632 233 44420 1346788999999 89999999999999853
No 41
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.94 E-value=7.2e-25 Score=272.74 Aligned_cols=273 Identities=14% Similarity=0.172 Sum_probs=220.1
Q ss_pred eEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2220 V~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
+.+.+++|++ ..+++++.||.|++||..+++....+.. .|.+.|++++|+|++++|++|+.||.|++||
T Consensus 94 ~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~---------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 94 YYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAET---------DESTYVASVKWSHDGSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp TTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEEC---------CTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeec---------CCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence 3356777765 4588899999999999999988777643 1458899999999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+.+++.. ..+.+|...|.++..+++.+++++ .||.|++||++.. ...+..+.+|.+.|.+++|+|+
T Consensus 163 ~~~~~~~--------~~~~~~~~~v~~~~~~~~~l~~~~---~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~-- 228 (401)
T 4aez_A 163 VESQTKL--------RTMAGHQARVGCLSWNRHVLSSGS---RSGAIHHHDVRIA-NHQIGTLQGHSSEVCGLAWRSD-- 228 (401)
T ss_dssp TTTCCEE--------EEECCCSSCEEEEEEETTEEEEEE---TTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTT--
T ss_pred CcCCeEE--------EEecCCCCceEEEEECCCEEEEEc---CCCCEEEEecccC-cceeeEEcCCCCCeeEEEEcCC--
Confidence 9877533 336688888987666889999986 8999999999853 5567888899999999999997
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--c---cCCCCCceEEEccc---
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--S---KPGDQNGMLWYIPK--- 2451 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v---~s~D~sv~Iwdi~~--- 2451 (2548)
+.+|++|+.||.|++||++ +++.+..+.. .......+.++|++.. + +..++.+++|++..
T Consensus 229 -----~~~l~s~~~d~~v~iwd~~---~~~~~~~~~~----~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 229 -----GLQLASGGNDNVVQIWDAR---SSIPKFTKTN----HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR 296 (401)
T ss_dssp -----SSEEEEEETTSCEEEEETT---CSSEEEEECC----CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE
T ss_pred -----CCEEEEEeCCCeEEEccCC---CCCccEEecC----CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE
Confidence 7899999999999999954 5666655521 1233567889998765 2 22589999999643
Q ss_pred ----CCCCCEEEEEEeCCCCEEEEE--eCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCC
Q 000054 2452 ----AHLGSVTRISTVPNTSLFLTG--SKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR 2525 (2548)
Q Consensus 2452 ----gH~~~VtsLafSPdG~~LaSG--S~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd 2525 (2548)
.|...|.+++|+|++++++++ +.||.|++||+.+++...... +.+|.+. |.+++|+|+
T Consensus 297 ~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~------------~~~h~~~----v~~~~~s~d 360 (401)
T 4aez_A 297 VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD------------IPAHDTR----VLYSALSPD 360 (401)
T ss_dssp EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE------------EECCSSC----CCEEEECTT
T ss_pred EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE------------ecCCCCC----EEEEEECCC
Confidence 367789999999999999995 489999999999877665441 3567654 466799999
Q ss_pred e--EEEEECCCcEEEEECCCCc
Q 000054 2526 G--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2526 G--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
| |++++.||+|++|++.++.
T Consensus 361 g~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 361 GRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp SSEEEEECTTSEEEEEECCC--
T ss_pred CCEEEEEeCCCcEEEEECCCCc
Confidence 9 8999999999999998764
No 42
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.94 E-value=2.8e-24 Score=286.96 Aligned_cols=253 Identities=19% Similarity=0.252 Sum_probs=195.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|++++|++|+.||+|+|||+.+++....+.. |.+.|.+++|+|++++|++|+.||+|++||+.
T Consensus 433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~----------h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVG----------HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC----------CSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeC----------CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence 68999999999999999999999999999988877643 56899999999999999999999999999986
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCC--CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSG--SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdG--slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
....... .....+|...|.+ |+|++ ..+++++ .|++|++||++. .+....+.+|.+.|++++|+|+
T Consensus 503 ~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~d~~v~vwd~~~--~~~~~~~~~h~~~v~~v~~spd 572 (694)
T 3dm0_A 503 GECKYTI-----SEGGEGHRDWVSCVRFSPNTLQPTIVSAS---WDKTVKVWNLSN--CKLRSTLAGHTGYVSTVAVSPD 572 (694)
T ss_dssp SCEEEEE-----CSSTTSCSSCEEEEEECSCSSSCEEEEEE---TTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTT
T ss_pred CCcceee-----ccCCCCCCCcEEEEEEeCCCCcceEEEEe---CCCeEEEEECCC--CcEEEEEcCCCCCEEEEEEeCC
Confidence 5432111 1123567777764 88876 5788886 899999999986 6778889999999999999998
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
+.+|++|+.||+|++||+ .+++.+..+ .+...|
T Consensus 573 -------g~~l~sg~~Dg~i~iwd~---~~~~~~~~~-------------------------------------~~~~~v 605 (694)
T 3dm0_A 573 -------GSLCASGGKDGVVLLWDL---AEGKKLYSL-------------------------------------EANSVI 605 (694)
T ss_dssp -------SSEEEEEETTSBCEEEET---TTTEEEECC-------------------------------------BCSSCE
T ss_pred -------CCEEEEEeCCCeEEEEEC---CCCceEEEe-------------------------------------cCCCcE
Confidence 789999999999999994 456555443 234579
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCC--ceeecEEEEEEcCCe--EEEEECC
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGG--VVRAGVTDIQVVSRG--FLSCGGD 2533 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~--~V~a~VtsLafSPdG--LaSGS~D 2533 (2548)
.+++|+|++.++++++ |+.|+|||+++++.+..+......... .....++.. .....+++++|+|+| |+||+.|
T Consensus 606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D 683 (694)
T 3dm0_A 606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAE-KADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD 683 (694)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-----------------CCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccc-cccccccccCCceeEEeeeEEEcCCCCEEEEEcCC
Confidence 9999999999888775 566999999999999877422111000 000001100 000236789999999 9999999
Q ss_pred CcEEEEECCC
Q 000054 2534 GSVKLIQLED 2543 (2548)
Q Consensus 2534 GtIrIWDL~s 2543 (2548)
|+|++|++..
T Consensus 684 g~i~iW~i~~ 693 (694)
T 3dm0_A 684 GVIRVWGIGR 693 (694)
T ss_dssp SEEEEEEC--
T ss_pred CeEEEEeccC
Confidence 9999999853
No 43
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.93 E-value=2.2e-24 Score=261.19 Aligned_cols=226 Identities=15% Similarity=0.222 Sum_probs=187.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+|++|++|+.|++|++||+.+++.+..+.. |.+.|.+++|+|++.++++|+.||+|++||++
T Consensus 68 v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~ 137 (319)
T 3frx_A 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG----------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137 (319)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC----------CSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEcc----------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 68899999999999999999999999999998877753 55899999999999999999999999999997
Q ss_pred CCcccccccCccceeccCCcccEEE--EcC------CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITS------SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSp------dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
... ...+.+|...|.+ +.| ++..+++++ .|+.|++||++. .+....+.+|...|++++
T Consensus 138 ~~~---------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~--~~~~~~~~~h~~~v~~~~ 203 (319)
T 3frx_A 138 GQC---------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAG---NDKMVKAWNLNQ--FQIEADFIGHNSNINTLT 203 (319)
T ss_dssp SCE---------EEEECCCSSCEEEEEECCC------CCEEEEEE---TTSCEEEEETTT--TEEEEEECCCCSCEEEEE
T ss_pred CCe---------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEe---CCCEEEEEECCc--chhheeecCCCCcEEEEE
Confidence 431 2346678877764 555 445888886 899999999976 567778889999999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEcc--
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYIP-- 2450 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~-- 2450 (2548)
|+|+ +.+|++|+.||+|++|| +.+++.+..+.. ......++|+|++.. ++..+..+++|++.
T Consensus 204 ~sp~-------g~~l~s~~~dg~i~iwd---~~~~~~~~~~~~-----~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~ 268 (319)
T 3frx_A 204 ASPD-------GTLIASAGKDGEIMLWN---LAAKKAMYTLSA-----QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268 (319)
T ss_dssp ECTT-------SSEEEEEETTCEEEEEE---TTTTEEEEEEEC-----CSCEEEEEECSSSSEEEEEETTEEEEEEETTE
T ss_pred EcCC-------CCEEEEEeCCCeEEEEE---CCCCcEEEEecC-----CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC
Confidence 9998 78999999999999999 456677666532 123567899999988 44455567888742
Q ss_pred --------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000054 2451 --------------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2451 --------------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
..|...|.+++|+|+|++|++|+.||.|+|||+.++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 235678999999999999999999999999998764
No 44
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.9e-25 Score=276.43 Aligned_cols=288 Identities=14% Similarity=0.176 Sum_probs=208.2
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCC---CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGK---DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~t---g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrV 2297 (2548)
|.+++|+| ++++|++|+.||+|+|||+.+ +....... ...|.+.|++++|+|++++|++|+.||+|++
T Consensus 66 V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~v 137 (437)
T 3gre_A 66 ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL--------TYDCSSTVTQITMIPNFDAFAVSSKDGQIIV 137 (437)
T ss_dssp EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE--------EEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee--------eccCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence 79999999 999999999999999999876 43111100 0125689999999999999999999999999
Q ss_pred EEcC---CCcccccccCcccee--ccC--CcccEEE----EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec--
Q 000054 2298 WQLE---VGGRSNVRPMESCLC--FSS--HAMDVSY----ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC-- 2364 (2548)
Q Consensus 2298 WDl~---tgk~i~i~p~~s~~t--~~g--H~~~V~a----fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g-- 2364 (2548)
||++ +++............ +.. +...+.+ +++++.++++++ .|+.|++||++. .+.+..+.+
T Consensus 138 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~--~~~~~~~~~~~ 212 (437)
T 3gre_A 138 LKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT---NLSRVIIFDIRT--LERLQIIENSP 212 (437)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE---TTSEEEEEETTT--CCEEEEEECCG
T ss_pred EEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe---CCCeEEEEeCCC--CeeeEEEccCC
Confidence 9995 443222111111111 111 3333432 568899999987 899999999986 677888887
Q ss_pred cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc----ccCCCCCC--cc
Q 000054 2365 HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH----ADAQTGSG--SK 2438 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v----afSpdGk~--v~ 2438 (2548)
|.+.|++++|+|+ +.+|++|+.||.|++||++ +++.+..+.... ......+ .+++++.+ .+
T Consensus 213 h~~~v~~~~~s~~-------~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~---~~~v~~~~~~~~~s~~~~~l~s~ 279 (437)
T 3gre_A 213 RHGAVSSICIDEE-------CCVLILGTTRGIIDIWDIR---FNVLIRSWSFGD---HAPITHVEVCQFYGKNSVIVVGG 279 (437)
T ss_dssp GGCCEEEEEECTT-------SCEEEEEETTSCEEEEETT---TTEEEEEEBCTT---CEEEEEEEECTTTCTTEEEEEEE
T ss_pred CCCceEEEEECCC-------CCEEEEEcCCCeEEEEEcC---CccEEEEEecCC---CCceEEEEeccccCCCccEEEEE
Confidence 8999999999998 7899999999999999954 567766652111 1123344 56677766 56
Q ss_pred CCCCCceEEEccc--------------------------------C--CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000054 2439 PGDQNGMLWYIPK--------------------------------A--HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2439 s~D~sv~Iwdi~~--------------------------------g--H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
+.|+.+++|++.. + |...|++++|+ ++++|++|+.||.|++||+.
T Consensus 280 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 280 SSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp STTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred cCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence 7788899998531 1 66779999999 78999999999999999999
Q ss_pred CCcEEEEecccccc-ccc----------------------ccCcccCCCCceeecEEEEEEcCC--e--EEEEECCCcEE
Q 000054 2485 AAQLVYHWSKLHER-HTF----------------------LQPSSRGFGGVVRAGVTDIQVVSR--G--FLSCGGDGSVK 2537 (2548)
Q Consensus 2485 Tgell~tL~~~Hs~-hsf----------------------l~~tl~GH~~~V~a~VtsLafSPd--G--LaSGS~DGtIr 2537 (2548)
+++.+..+.+.... ..+ ....+.+|.+ .|++++|+++ + |+||+.||+|+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~I~~i~~~~~~~~~~l~s~~~dG~I~ 434 (437)
T 3gre_A 359 ELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHD----IINSISTCEVDETPLLVACDNSGLIG 434 (437)
T ss_dssp CGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CC----CEEEEEEEESSSSEEEEEEETTSCEE
T ss_pred CcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccccc----ceeeEeeeccCCceEEEEEcCCceEE
Confidence 99887777421000 000 0011233654 4567788887 4 89999999999
Q ss_pred EEE
Q 000054 2538 LIQ 2540 (2548)
Q Consensus 2538 IWD 2540 (2548)
+|+
T Consensus 435 iw~ 437 (437)
T 3gre_A 435 IFQ 437 (437)
T ss_dssp EEC
T ss_pred EeC
Confidence 995
No 45
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.93 E-value=1.9e-24 Score=261.76 Aligned_cols=257 Identities=12% Similarity=0.068 Sum_probs=199.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
+.+++|+|++++|++|+.||.|++||+.+++ .+..+.. |.+.|++++|+|++++|++++.||.|++||
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE----------HNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC----------CSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC----------CCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 5899999999999999999999999999887 5666542 558999999999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCCeEEEEEc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~VtSLafs 2375 (2548)
+++++.... .....|...|.+ |+|+++++++++ .|+.|++||++..... ......+|...|.+++|+
T Consensus 81 ~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 81 LKGRTWKPT------LVILRINRAARCVRWAPNEKKFAVGS---GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp EETTEEEEE------EECCCCSSCEEEEEECTTSSEEEEEE---TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred CCCCeeeee------EEeecCCCceeEEEECCCCCEEEEEe---CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence 987642211 224567777764 899999999987 8999999999863211 123335789999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
|+ +.++++|+.||.|++||++........ .................+.+|..
T Consensus 152 ~~-------~~~l~~~~~dg~i~~~d~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~ 203 (372)
T 1k8k_C 152 PN-------SVLLAAGSCDFKCRIFSAYIKEVEERP---------------------APTPWGSKMPFGELMFESSSSCG 203 (372)
T ss_dssp TT-------SSEEEEEETTSCEEEEECCCTTTSCCC---------------------CCBTTBSCCCTTCEEEECCCCSS
T ss_pred CC-------CCEEEEEcCCCCEEEEEcccccccccc---------------------cccccccccchhhheEecCCCCC
Confidence 98 789999999999999996521100000 00000000111233334468999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCC
Q 000054 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDG 2534 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DG 2534 (2548)
.|.+++|+|++++|++++.||.|++||+++++++.++ .+|.. .|.+++|+|++ +++++.||
T Consensus 204 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------------~~~~~----~v~~~~~~~~~~~l~~~~d~ 265 (372)
T 1k8k_C 204 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL--------------ASETL----PLLAVTFITESSLVAAGHDC 265 (372)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE--------------ECSSC----CEEEEEEEETTEEEEEETTS
T ss_pred eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE--------------ccCCC----CeEEEEEecCCCEEEEEeCC
Confidence 9999999999999999999999999999999998877 45543 35778999999 66566999
Q ss_pred cEEEEECCC
Q 000054 2535 SVKLIQLED 2543 (2548)
Q Consensus 2535 tIrIWDL~s 2543 (2548)
.|++|++.+
T Consensus 266 ~i~i~~~~~ 274 (372)
T 1k8k_C 266 FPVLFTYDS 274 (372)
T ss_dssp SCEEEEEET
T ss_pred eEEEEEccC
Confidence 999999987
No 46
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.93 E-value=3.4e-24 Score=288.25 Aligned_cols=277 Identities=14% Similarity=0.225 Sum_probs=227.1
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
.+.+|. +.+++|+|+|+++++|+.||.|+|||+.+++.+..+.. |.+.|++++|+|++++|++|+.||
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~dg 77 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV----------TETPVRAGKFIARKNWIIVGSDDF 77 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC----------CSSCEEEEEEEGGGTEEEEEETTS
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEec----------CCCcEEEEEEeCCCCEEEEEeCCC
Confidence 444444 79999999999999999999999999999998888753 458899999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.|++||+.+++.. ..+.+|...|.+ |+|+++.+++++ .||.|++||+... ......+.+|.+.|.+
T Consensus 78 ~i~vw~~~~~~~~--------~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~vw~~~~~-~~~~~~~~~~~~~v~~ 145 (814)
T 3mkq_A 78 RIRVFNYNTGEKV--------VDFEAHPDYIRSIAVHPTKPYVLSGS---DDLTVKLWNWENN-WALEQTFEGHEHFVMC 145 (814)
T ss_dssp EEEEEETTTCCEE--------EEEECCSSCEEEEEECSSSSEEEEEE---TTSEEEEEEGGGT-SEEEEEEECCSSCEEE
T ss_pred eEEEEECCCCcEE--------EEEecCCCCEEEEEEeCCCCEEEEEc---CCCEEEEEECCCC-ceEEEEEcCCCCcEEE
Confidence 9999999987643 236678888874 899999999986 8999999999752 3567788899999999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCC--CCCC--ccCCCCCceEE
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ--TGSG--SKPGDQNGMLW 2447 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp--dGk~--v~s~D~sv~Iw 2447 (2548)
++|+|.+ +..+++|+.||+|++||++ +++....+.. ........+.++| ++.. +++.++.+++|
T Consensus 146 ~~~~p~~------~~~l~~~~~dg~v~vwd~~---~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~ 213 (814)
T 3mkq_A 146 VAFNPKD------PSTFASGCLDRTVKVWSLG---QSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213 (814)
T ss_dssp EEEETTE------EEEEEEEETTSEEEEEETT---CSSCSEEEEC---CCTTCCCEEEECCSTTCCEEEEECTTSEEEEE
T ss_pred EEEEcCC------CCEEEEEeCCCeEEEEECC---CCcceeEEec---CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 9999943 6799999999999999954 3444444321 1112345567777 7776 66778899999
Q ss_pred Ec--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEE
Q 000054 2448 YI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2448 di--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
+. +.+|.+.|.+++|+|+++++++|+.||.|++||+.+++.+.++ ..|.. .+++
T Consensus 214 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------------~~~~~----~v~~ 275 (814)
T 3mkq_A 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL--------------NVGLE----RSWC 275 (814)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE--------------CCSSS----SEEE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------ecCCC----cEEE
Confidence 85 3468999999999999999999999999999999999998877 34443 3567
Q ss_pred EEEcCCe---EEEEECCCcEEEEECCCC
Q 000054 2520 IQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2520 LafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
++|+|+| +++++.|+.+.+|++.++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 276 IATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp EEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred EEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 7999998 577777888999998754
No 47
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.3e-24 Score=262.01 Aligned_cols=234 Identities=20% Similarity=0.258 Sum_probs=195.1
Q ss_pred CCCCCeEEEEEccC----CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCC
Q 000054 2269 YALASISALQFDHY----GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSN 2342 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPd----G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~ 2342 (2548)
+|.+.|++++|+|+ +.+|+||+.||+|++|+++.+... ....+.+|...|.+ +++++.++++++ .
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~------~~~~l~gh~~~v~~~~~~~~~~~l~s~s---~ 100 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD------LQWSLEGHQLGVVSVDISHTLPIAASSS---L 100 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE------EEEEECCCSSCEEEEEECSSSSEEEEEE---T
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee------eeeeeccCCCCEEEEEECCCCCEEEEEe---C
Confidence 46799999999874 678999999999999999865321 12347899998875 889999999986 8
Q ss_pred CCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCC
Q 000054 2343 GINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS 2422 (2548)
Q Consensus 2343 DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~ 2422 (2548)
|++|++||+.+ ++.+..+..|...+.+++|+|+ +++|++|+.||.|++||+ .+++....+.. ..
T Consensus 101 D~~i~lWd~~~--~~~~~~~~~~~~~~~~~~~spd-------g~~l~~g~~dg~v~i~~~---~~~~~~~~~~~----~~ 164 (321)
T 3ow8_A 101 DAHIRLWDLEN--GKQIKSIDAGPVDAWTLAFSPD-------SQYLATGTHVGKVNIFGV---ESGKKEYSLDT----RG 164 (321)
T ss_dssp TSEEEEEETTT--TEEEEEEECCTTCCCCEEECTT-------SSEEEEECTTSEEEEEET---TTCSEEEEEEC----SS
T ss_pred CCcEEEEECCC--CCEEEEEeCCCccEEEEEECCC-------CCEEEEEcCCCcEEEEEc---CCCceeEEecC----CC
Confidence 99999999986 6778888899999999999998 789999999999999994 45666555421 12
Q ss_pred ccccccccCCCCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2423 INTCAHADAQTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2423 ~~~~~vafSpdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.....++++|+|++ +++.|+.+++|++ +.+|...|++++|+|++++|++|+.||+|++||+++++.+.++
T Consensus 165 ~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE
Confidence 23456889999998 6678899999985 3579999999999999999999999999999999999888766
Q ss_pred cccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2493 SKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2493 ~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+. |.+++|+|++ |++|+.||+|++||+.++.
T Consensus 245 --------------~~h~~~----v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 245 --------------SGHASW----VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp --------------CCCSSC----EEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred --------------cCCCCc----eEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence 677654 5677999999 8999999999999998764
No 48
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.93 E-value=6e-24 Score=300.23 Aligned_cols=271 Identities=14% Similarity=0.205 Sum_probs=227.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+|+++++|+.||+|++||+.+++.+..+.. |.+.|++++|+|+++++++|+.||+|++||+.
T Consensus 618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~----------h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA----------HEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEecc----------CCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 79999999999999999999999999999998887742 56899999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--EcC--CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITS--SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSp--dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+++.. ..+.+|...|.+ |++ ++.++++++ .|+.|++||+.+ ++++..+.+|.+.|++++|+|+
T Consensus 688 ~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~l~sg~---~d~~v~vwd~~~--~~~~~~~~~h~~~v~~~~~sp~ 754 (1249)
T 3sfz_A 688 TGKLV--------HTYDEHSEQVNCCHFTNKSNHLLLATGS---NDFFLKLWDLNQ--KECRNTMFGHTNSVNHCRFSPD 754 (1249)
T ss_dssp TCCEE--------EEEECCSSCEEEEEECSSSSCCEEEEEE---TTSCEEEEETTS--SSEEEEECCCSSCEEEEEECSS
T ss_pred CCceE--------EEEcCCCCcEEEEEEecCCCceEEEEEe---CCCeEEEEECCC--cchhheecCCCCCEEEEEEecC
Confidence 87643 346788888874 777 455788876 899999999986 6788889999999999999998
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC---------CCCCccccccccCCCCCC-ccCCCCCceEE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR---------GGSSINTCAHADAQTGSG-SKPGDQNGMLW 2447 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~---------~~s~~~~~~vafSpdGk~-v~s~D~sv~Iw 2447 (2548)
++.+++|+.||+|++||+ .+++....+.... .........++++|+|.. +...++.+.+|
T Consensus 755 -------~~~l~s~s~dg~v~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~ 824 (1249)
T 3sfz_A 755 -------DELLASCSADGTLRLWDV---RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824 (1249)
T ss_dssp -------TTEEEEEESSSEEEEEEG---GGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred -------CCEEEEEECCCeEEEEeC---CCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence 789999999999999995 4555554432111 111224567789999998 55557888999
Q ss_pred Ecc---------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEE
Q 000054 2448 YIP---------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVT 2518 (2548)
Q Consensus 2448 di~---------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vt 2518 (2548)
+.. .+|...|.+++|+|+++++++|+.||.|++||+.+++.+..+ .+|.+. |.
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------------~~h~~~----v~ 886 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC--------------RGHLSW----VH 886 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE--------------CCCSSC----EE
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec--------------CCCccc----eE
Confidence 853 378999999999999999999999999999999999988766 577654 56
Q ss_pred EEEEcCCe--EEEEECCCcEEEEECCC
Q 000054 2519 DIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2519 sLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
+++|+|+| +++++.||+|++|++.+
T Consensus 887 ~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 887 GVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 77999999 89999999999999753
No 49
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.93 E-value=2.7e-24 Score=263.27 Aligned_cols=243 Identities=18% Similarity=0.215 Sum_probs=188.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
|.+++|+|+|++|++|+.|++|++||..++. .+..+ . +|.+.|.+++|+|++++|++|+.||+|++||
T Consensus 64 v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~---~-------~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd 133 (345)
T 3fm0_A 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL---E-------GHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133 (345)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE---C-------CCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc---c-------CCCCCceEEEEeCCCCEEEEEECCCeEEEEE
Confidence 6899999999999999999999999998764 33343 2 3568999999999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
++++.... ....+.+|...|.+ |+|++++|++++ .|+.|++||.+.....+...+.+|.+.|++++|+|+
T Consensus 134 ~~~~~~~~-----~~~~~~~h~~~v~~~~~~p~~~~l~s~s---~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 205 (345)
T 3fm0_A 134 VDEEDEYE-----CVSVLNSHTQDVKHVVWHPSQELLASAS---YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS 205 (345)
T ss_dssp ECTTSCEE-----EEEEECCCCSCEEEEEECSSSSCEEEEE---TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT
T ss_pred CCCCCCeE-----EEEEecCcCCCeEEEEECCCCCEEEEEe---CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC
Confidence 98664221 23346788888864 899999999986 899999999876322356788899999999999998
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccC------------ceeeeecCCCCCCCccccccccCCCCCC--ccCCCCC
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATG------------KTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQN 2443 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TG------------k~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~s 2443 (2548)
+.+|++|+.||+|++||.+..... +++..+ ..........+++++++.. .++.|+.
T Consensus 206 -------g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~v~~~~~~~~l~s~~~d~~ 275 (345)
T 3fm0_A 206 -------GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL---SGFHSRTIYDIAWCQLTGALATACGDDA 275 (345)
T ss_dssp -------SSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE---CSSCSSCEEEEEECTTTCCEEEEETTSC
T ss_pred -------CCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe---cCCCCCcEEEEEEecCCCEEEEEeCCCe
Confidence 789999999999999996421111 112222 1111223456788998887 6678899
Q ss_pred ceEEEcc-----------------cCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2444 GMLWYIP-----------------KAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2444 v~Iwdi~-----------------~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
+++|+.. .+|...|++++|+|++ .+|++|+.||+|++|++.+++....+
T Consensus 276 i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 276 IRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred EEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 9999742 4789999999999987 59999999999999999988876544
No 50
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.93 E-value=1.8e-24 Score=269.54 Aligned_cols=261 Identities=10% Similarity=0.125 Sum_probs=190.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc-----------eeEEEeccCCCCCCCCCCC------------CCeEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK-----------ATATYGVLPAANVPPPYAL------------ASISALQ 2278 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~-----------~l~t~~~l~ghs~~~~~H~------------~~VtsVa 2278 (2548)
|.+++|+|+|++||+|+.||.|+|||+.+++ ....+. +|. +.|++++
T Consensus 31 V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~----------~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 31 ISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ----------SHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE----------CCCCEEEGGGTEEECCCCCEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc----------cccccccccccccccCceEEEE
Confidence 6999999999999999999999999999776 244443 244 7899999
Q ss_pred EccCC--CEEEEEeCCCcEEEEEcCCCccccc-------------------ccC------------ccc-eeccCCcccE
Q 000054 2279 FDHYG--HRFASAALDGTVCTWQLEVGGRSNV-------------------RPM------------ESC-LCFSSHAMDV 2324 (2548)
Q Consensus 2279 FSPdG--~~LaSGS~DGtVrVWDl~tgk~i~i-------------------~p~------------~s~-~t~~gH~~~V 2324 (2548)
|+|++ ..|++++.||+|++||+.++..... ... ... ....+|...|
T Consensus 101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 99998 8999999999999999976432100 000 000 1135788877
Q ss_pred EE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-------eeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC
Q 000054 2325 SY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-------SITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG 2395 (2548)
Q Consensus 2325 ~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-------sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG 2395 (2548)
.+ |+|++++++++ .|+.|++||++.. ...+. .+.+|...|++++|+|++ ..+|++|+.||
T Consensus 181 ~~~~~~~~~~~l~s~----~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~------~~~l~s~~~dg 249 (447)
T 3dw8_B 181 NSISINSDYETYLSA----DDLRINLWHLEIT-DRSFNIVDIKPANMEELTEVITAAEFHPNS------CNTFVYSSSKG 249 (447)
T ss_dssp CEEEECTTSSEEEEE----CSSEEEEEETTEE-EEEEEEEECCCSSGGGCCCCEEEEEECSSC------TTEEEEEETTS
T ss_pred EEEEEcCCCCEEEEe----CCCeEEEEECCCC-CceeeeeecccccccccCcceEEEEECCCC------CcEEEEEeCCC
Confidence 64 89999999996 5999999999742 23333 366899999999999982 38999999999
Q ss_pred cEEEEeCCccccCce----eeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEE
Q 000054 2396 DVGIHDFRYIATGKT----KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLT 2471 (2548)
Q Consensus 2396 tVrLWDLR~l~TGk~----l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaS 2471 (2548)
.|++||++. ++. +..+...... ..-..+.+|...|.+++|+|+|++|++
T Consensus 250 ~i~iwd~~~---~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~v~~~~~s~~g~~l~~ 302 (447)
T 3dw8_B 250 TIRLCDMRA---SALCDRHSKLFEEPEDP------------------------SNRSFFSEIISSISDVKFSHSGRYMMT 302 (447)
T ss_dssp CEEEEETTT---CSSSCTTCEEECCC-----------------------------CCHHHHHTTCEEEEEECTTSSEEEE
T ss_pred eEEEEECcC---CccccceeeEeccCCCc------------------------cccccccccCceEEEEEECCCCCEEEE
Confidence 999999653 332 2232000000 000012345669999999999999999
Q ss_pred EeCCCcEEEEECCC-CcEEEEecccccccccccCcccCCCCcee-----------ecEEEEEEcCCe--EEEEECCCcEE
Q 000054 2472 GSKDGDVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVR-----------AGVTDIQVVSRG--FLSCGGDGSVK 2537 (2548)
Q Consensus 2472 GS~DGtIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~-----------a~VtsLafSPdG--LaSGS~DGtIr 2537 (2548)
++. |.|++||+++ ++++.++ .+|...+. ..+.+++|+|+| |++|+.||.|+
T Consensus 303 ~~~-~~v~iwd~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~ 367 (447)
T 3dw8_B 303 RDY-LSVKVWDLNMENRPVETY--------------QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFR 367 (447)
T ss_dssp EES-SEEEEEETTCCSSCSCCE--------------ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEE
T ss_pred eeC-CeEEEEeCCCCcccccee--------------eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEE
Confidence 999 9999999997 7776655 34432111 012347999999 89999999999
Q ss_pred EEECCCCc
Q 000054 2538 LIQLEDYQ 2545 (2548)
Q Consensus 2538 IWDL~sg~ 2545 (2548)
+||+.++.
T Consensus 368 iwd~~~~~ 375 (447)
T 3dw8_B 368 MFDRNTKR 375 (447)
T ss_dssp EEETTTCC
T ss_pred EEEcCCCc
Confidence 99998764
No 51
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.93 E-value=6.6e-24 Score=258.96 Aligned_cols=234 Identities=21% Similarity=0.277 Sum_probs=192.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVr 2347 (2548)
|.+.|++++|+|++++|++|+.||+|++||+.++... ..+..|...|. +|+|+++++++++ .|+.|+
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~--------~~~~~~~~~v~~~~~s~~~~~l~s~~---~d~~v~ 122 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV--------HAIPLRSSWVMTCAYAPSGNYVACGG---LDNICS 122 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE--------EEEECSSSCEEEEEECTTSSEEEEEE---TTCEEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcc--------eEeecCCccEEEEEECCCCCEEEEEe---CCCeEE
Confidence 6699999999999999999999999999999877543 23566777776 4899999999997 899999
Q ss_pred EEECCCCCC--CcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000054 2348 VWDTLAPPT--SSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2348 IWDl~t~~~--k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
+||+..... .....+.+|.+.|.++.|++++ .+++|+.||+|++|| +.+++.+..+.. + ....
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--------~l~s~s~d~~i~~wd---~~~~~~~~~~~~---h-~~~v 187 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--------QIVTSSGDTTCALWD---IETGQQTTTFTG---H-TGDV 187 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--------EEEEEETTSCEEEEE---TTTTEEEEEECC---C-SSCE
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECCCC--------cEEEEECCCcEEEEE---CCCCcEEEEEcC---C-CCce
Confidence 999976322 2456778999999999999874 699999999999999 556777766621 1 2235
Q ss_pred cccccCCCCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc
Q 000054 2426 CAHADAQTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKL 2495 (2548)
Q Consensus 2426 ~~vafSpdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~ 2495 (2548)
..+.++|++++ .++.|+.+++|++ +.+|...|++++|+|++++|++|+.||+|++||+++++.+..+.
T Consensus 188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-- 265 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-- 265 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc--
Confidence 67789999987 6678999999995 35799999999999999999999999999999999998887662
Q ss_pred ccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2496 HERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
| .++. ..|++++|+|+| |++|+.||+|++||+.++.
T Consensus 266 ~----------~~~~----~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 266 H----------DNII----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp C----------TTCC----SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred c----------CCcc----cceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 1 1111 347888999999 8899999999999987653
No 52
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.93 E-value=1.5e-23 Score=255.83 Aligned_cols=229 Identities=15% Similarity=0.164 Sum_probs=184.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+|++.++++|+.|++|++||+.+++.+..+.. |.+.|.+++|+|++++|++|+.||+|++||+.
T Consensus 79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~----------h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG----------HQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEEC----------CCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC----------CCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence 68999999999999999999999999999988877743 55899999999999999999999999999997
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCC----------CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSG----------SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdG----------slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
...... .....+|...|.+ ++|++ .++++++ .|+.|++||.. ......+.+|...|
T Consensus 149 ~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~---~~~~~~~~~h~~~v 216 (343)
T 2xzm_R 149 GECKFS------SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG---WDGRLKVWNTN---FQIRYTFKAHESNV 216 (343)
T ss_dssp SCEEEE------CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE---TTSEEEEEETT---TEEEEEEECCSSCE
T ss_pred CCceee------eecccCCCceeeeeeeccccccccccCCCCCEEEEEc---CCCEEEEEcCC---CceeEEEcCccccc
Confidence 432111 1113367666664 77776 7899986 89999999953 45677888999999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEE
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWY 2448 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwd 2448 (2548)
++++|+|+ +++|++|+.||.|++||++. .......+.. ......++|+|++.+ .++.++.+++|+
T Consensus 217 ~~~~~s~~-------g~~l~sgs~dg~v~iwd~~~--~~~~~~~~~~-----~~~v~~v~~sp~~~~la~~~d~~v~iw~ 282 (343)
T 2xzm_R 217 NHLSISPN-------GKYIATGGKDKKLLIWDILN--LTYPQREFDA-----GSTINQIAFNPKLQWVAVGTDQGVKIFN 282 (343)
T ss_dssp EEEEECTT-------SSEEEEEETTCEEEEEESSC--CSSCSEEEEC-----SSCEEEEEECSSSCEEEEEESSCEEEEE
T ss_pred eEEEECCC-------CCEEEEEcCCCeEEEEECCC--CcccceeecC-----CCcEEEEEECCCCCEEEEECCCCEEEEE
Confidence 99999998 78999999999999999742 2222222211 112567889999987 455677899998
Q ss_pred ccc---------------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000054 2449 IPK---------------------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2449 i~~---------------------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
+.. +|...|.+++|+|+|++|++|+.||+|++||+.++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 283 LMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred eCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 521 57788999999999999999999999999998765
No 53
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.93 E-value=5.1e-24 Score=284.48 Aligned_cols=245 Identities=20% Similarity=0.327 Sum_probs=197.2
Q ss_pred cCCeE--EEEEEEcCCC-CEEEEEECCCeEEEEEcCCCcee--EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000054 2217 VENIS--TRAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKAT--ATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2217 l~gV~--V~~VsfSPdG-~~LASGS~DGsVrLWDl~tg~~l--~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
+.+|. |.+++|+|++ ++|+||+.||+|++||+.++... .....+ .+|.+.|++++|+|++++|++|+.
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-------~~h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-------TGHSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-------ECCSSCEEEEEECTTSSEEEEEET
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-------cCCCCcEEEEEECCCCCEEEEEeC
Confidence 44444 7999999875 79999999999999999864321 111111 236689999999999999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee----eecc
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS----ITCH 2365 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s----l~gH 2365 (2548)
||+|++||+.++... ..+.+|...|.+ |+|+++.+++++ .|++|++||... .+... ..+|
T Consensus 451 Dg~v~vwd~~~~~~~--------~~~~~h~~~v~~~~~s~~~~~l~s~s---~D~~i~iwd~~~---~~~~~~~~~~~~h 516 (694)
T 3dm0_A 451 DGELRLWDLAAGVST--------RRFVGHTKDVLSVAFSLDNRQIVSAS---RDRTIKLWNTLG---ECKYTISEGGEGH 516 (694)
T ss_dssp TSEEEEEETTTTEEE--------EEEECCSSCEEEEEECTTSSCEEEEE---TTSCEEEECTTS---CEEEEECSSTTSC
T ss_pred CCcEEEEECCCCcce--------eEEeCCCCCEEEEEEeCCCCEEEEEe---CCCEEEEEECCC---CcceeeccCCCCC
Confidence 999999999887532 346789988874 899999999986 899999999864 22222 2478
Q ss_pred CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCce
Q 000054 2366 EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGM 2445 (2548)
Q Consensus 2366 s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~ 2445 (2548)
...|.+++|+|+. ....+++|+.||+|++||++ +++....+
T Consensus 517 ~~~v~~~~~~~~~-----~~~~l~s~s~d~~v~vwd~~---~~~~~~~~------------------------------- 557 (694)
T 3dm0_A 517 RDWVSCVRFSPNT-----LQPTIVSASWDKTVKVWNLS---NCKLRSTL------------------------------- 557 (694)
T ss_dssp SSCEEEEEECSCS-----SSCEEEEEETTSCEEEEETT---TCCEEEEE-------------------------------
T ss_pred CCcEEEEEEeCCC-----CcceEEEEeCCCeEEEEECC---CCcEEEEE-------------------------------
Confidence 9999999999983 13589999999999999954 45555554
Q ss_pred EEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCC
Q 000054 2446 LWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR 2525 (2548)
Q Consensus 2446 Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd 2525 (2548)
.+|.+.|++++|+|++++|++|+.||+|++||+++++.+..+ ..+ ..|.+++|+|+
T Consensus 558 -----~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~--------------~~~-----~~v~~~~~sp~ 613 (694)
T 3dm0_A 558 -----AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL--------------EAN-----SVIHALCFSPN 613 (694)
T ss_dssp -----CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC--------------BCS-----SCEEEEEECSS
T ss_pred -----cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe--------------cCC-----CcEEEEEEcCC
Confidence 789999999999999999999999999999999999988655 222 23678899999
Q ss_pred e-EEEEECCCcEEEEECCCCc
Q 000054 2526 G-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2526 G-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+ +++++.|+.|++||+.++.
T Consensus 614 ~~~l~~~~~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 614 RYWLCAATEHGIKIWDLESKS 634 (694)
T ss_dssp SSEEEEEETTEEEEEETTTTE
T ss_pred CcEEEEEcCCCEEEEECCCCC
Confidence 9 7777778889999998764
No 54
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.92 E-value=8.5e-24 Score=251.53 Aligned_cols=275 Identities=12% Similarity=0.160 Sum_probs=215.5
Q ss_pred EEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
.+.+++|+|+|++++++..++.+.+|+.......... ..|.+.|++++|+|+++++++++ ||.|++||+
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~ 79 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT----------LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDI 79 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE----------ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEET
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCcccccee----------ccCCCceEEEEEecCCcEEEEcC-CCeEEEEEC
Confidence 3688999999999999887777766654433222221 12568999999999999999999 999999999
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
.+++..... ......+|...|.+ ++|+++++++++ .|+.|++||+..+.......+..|...|.+++|+|+
T Consensus 80 ~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~- 152 (337)
T 1gxr_A 80 SHPGNKSPV---SQLDCLNRDNYIRSCKLLPDGCTLIVGG---EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD- 152 (337)
T ss_dssp TSTTCCSCS---EEEECSCTTSBEEEEEECTTSSEEEEEE---SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT-
T ss_pred CCCCceeee---ecccccCCCCcEEEEEEcCCCCEEEEEc---CCCcEEEEECCCCCcceeeecccCCCceEEEEECCC-
Confidence 876532211 11112367777764 899999999986 899999999987433356778889999999999998
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEccc-----
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIPK----- 2451 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~~----- 2451 (2548)
++++++++.||.|++||+ .+++.+..+.. .......+.++|++.. +++.++.+++|++..
T Consensus 153 ------~~~l~~~~~dg~v~~~d~---~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 219 (337)
T 1gxr_A 153 ------SKVCFSCCSDGNIAVWDL---HNQTLVRQFQG----HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219 (337)
T ss_dssp ------SSEEEEEETTSCEEEEET---TTTEEEEEECC----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred ------CCEEEEEeCCCcEEEEeC---CCCceeeeeec----ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEe
Confidence 789999999999999994 45666666521 1223567789999887 667788999999643
Q ss_pred --CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--E
Q 000054 2452 --AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2452 --gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--L 2527 (2548)
.|...+.+++|+|+++++++++.||.|++||+++++... + .+|.+ .|.+++|+|++ +
T Consensus 220 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~--------------~~~~~----~v~~~~~~~~~~~l 280 (337)
T 1gxr_A 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-L--------------HLHES----CVLSLKFAYCGKWF 280 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-E--------------CCCSS----CEEEEEECTTSSEE
T ss_pred eecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-E--------------cCCcc----ceeEEEECCCCCEE
Confidence 477899999999999999999999999999999887643 2 45654 45778999999 8
Q ss_pred EEEECCCcEEEEECCCCc
Q 000054 2528 LSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2528 aSGS~DGtIrIWDL~sg~ 2545 (2548)
++++.||.|++|++.++.
T Consensus 281 ~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 281 VSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp EEEETTSEEEEEETTTCC
T ss_pred EEecCCCcEEEEECCCCe
Confidence 899999999999998764
No 55
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.6e-25 Score=270.98 Aligned_cols=293 Identities=14% Similarity=0.118 Sum_probs=214.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCC----CceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGK----DKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~t----g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVr 2296 (2548)
+.+++|+|++++|++|+.||.|++||+.+ .+.+..+. .|.+.|++++|+|+ +++|++|+.||+|+
T Consensus 70 v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 70 FNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS----------NHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp EEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC----------CSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred eEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc----------CCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 68999999999999999999999999987 23444432 35689999999998 89999999999999
Q ss_pred EEEcCCCcccccc-cCccceeccCCcccEE--EEcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc------C
Q 000054 2297 TWQLEVGGRSNVR-PMESCLCFSSHAMDVS--YITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH------E 2366 (2548)
Q Consensus 2297 VWDl~tgk~i~i~-p~~s~~t~~gH~~~V~--afSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH------s 2366 (2548)
+||+++++..... .........+|...|. +|+|+ +.++++++ .|+.|++||++. .+.+..+..| .
T Consensus 140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~ 214 (416)
T 2pm9_A 140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG---SSNFASIWDLKA--KKEVIHLSYTSPNSGIK 214 (416)
T ss_dssp BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES---SSSCEEEEETTT--TEEEEEECCCCCSSCCC
T ss_pred EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc---CCCCEEEEECCC--CCcceEEeccccccccC
Confidence 9999877511000 0001122456777665 48888 78889886 899999999986 5666777665 7
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCC---cEEEEeCCccccCceeeeecCCCCCCCccccccccCC-CCCC--ccCC
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGG---DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ-TGSG--SKPG 2440 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DG---tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp-dGk~--v~s~ 2440 (2548)
..|.+++|+|++ ..++++++.|| .|++||++.. ...+..+. .........+.++| ++.+ +++.
T Consensus 215 ~~v~~~~~~~~~------~~~l~~~~~d~~~~~i~~~d~~~~--~~~~~~~~---~~~~~~v~~~~~s~~~~~~l~s~~~ 283 (416)
T 2pm9_A 215 QQLSVVEWHPKN------STRVATATGSDNDPSILIWDLRNA--NTPLQTLN---QGHQKGILSLDWCHQDEHLLLSSGR 283 (416)
T ss_dssp CCEEEEEECSSC------TTEEEEEECCSSSCCCCEEETTST--TSCSBCCC---SCCSSCEEEEEECSSCSSCEEEEES
T ss_pred CceEEEEECCCC------CCEEEEEECCCCCceEEEEeCCCC--CCCcEEee---cCccCceeEEEeCCCCCCeEEEEeC
Confidence 899999999984 56999999999 9999996531 12322221 01123356778888 7777 6677
Q ss_pred CCCceEEEc--------ccCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecc-------------c---
Q 000054 2441 DQNGMLWYI--------PKAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSK-------------L--- 2495 (2548)
Q Consensus 2441 D~sv~Iwdi--------~~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~-------------~--- 2495 (2548)
|+.+++|++ +.+|...|++++|+|++ .+|++++.||.|++||+.+++....... .
T Consensus 284 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (416)
T 2pm9_A 284 DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVS 363 (416)
T ss_dssp SSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------------
T ss_pred CCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccc
Confidence 889999985 34789999999999999 8999999999999999987654321100 0
Q ss_pred ---ccccc--cccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2496 ---HERHT--FLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2496 ---Hs~hs--fl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
|.... +-.+....|.. .+.+++|+|+| |++++.||+|++|++.++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 364 REESKEKPSVFHLQAPTWYGE----PSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ---CCSCCCSSCCCCCSTTCC----CSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccCCccccC----CccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 00000 00011112333 34566999999 779999999999999875
No 56
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.92 E-value=1.4e-23 Score=252.39 Aligned_cols=263 Identities=16% Similarity=0.182 Sum_probs=200.9
Q ss_pred EEEEEEcCC---CCEEEEEECCCeEEEEEcCC-Ccee-EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHPL---RPFFLVGSSNTHIYLWEFGK-DKAT-ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPd---G~~LASGS~DGsVrLWDl~t-g~~l-~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVr 2296 (2548)
|.+++|+|+ |++|++|+.||.|++||+.+ +..+ ..+. .|.+.|++++|+|++++|++|+.||.|+
T Consensus 42 v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ----------MHTGPVLDVCWSDDGSKVFTASCDKTAK 111 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE----------ECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec----------cccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence 799999999 69999999999999999997 5444 3443 2568999999999999999999999999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEE--E--cCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSY--I--TSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--f--SpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
+||+++++... ..+|...|.+ | +++++++++++ .||.|++||++. .+.+..+..|. .+.++
T Consensus 112 iwd~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~--~~~~~~~~~~~-~~~~~ 176 (368)
T 3mmy_A 112 MWDLSSNQAIQ---------IAQHDAPVKTIHWIKAPNYSCVMTGS---WDKTLKFWDTRS--SNPMMVLQLPE-RCYCA 176 (368)
T ss_dssp EEETTTTEEEE---------EEECSSCEEEEEEEECSSCEEEEEEE---TTSEEEEECSSC--SSCSEEEECSS-CEEEE
T ss_pred EEEcCCCCcee---------eccccCceEEEEEEeCCCCCEEEEcc---CCCcEEEEECCC--CcEEEEEecCC-CceEE
Confidence 99999775332 3457777764 6 88999999986 899999999986 56777777654 67777
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccccc------CCCCCCccCCCCCceE
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHAD------AQTGSGSKPGDQNGML 2446 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vaf------SpdGk~v~s~D~sv~I 2446 (2548)
.+.+. .+++++.|+.+++||++. ............. .....+.+ .+++..+++.++.+++
T Consensus 177 ~~~~~---------~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 177 DVIYP---------MAVVATAERGLIVYQLEN---QPSEFRRIESPLK--HQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242 (368)
T ss_dssp EEETT---------EEEEEEGGGCEEEEECSS---SCEEEEECCCSCS--SCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred EecCC---------eeEEEeCCCcEEEEEecc---ccchhhhcccccc--CCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence 76655 889999999999999753 2221111111111 11112222 2222347788899999
Q ss_pred EEcc-----------cCCCC------------CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccccccccc
Q 000054 2447 WYIP-----------KAHLG------------SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQ 2503 (2548)
Q Consensus 2447 wdi~-----------~gH~~------------~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~ 2503 (2548)
|++. .+|.. .|++++|+|++++|++|+.||.|++||+.+++++.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------- 311 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS----------- 311 (368)
T ss_dssp EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-----------
T ss_pred EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe-----------
Confidence 9853 34554 7999999999999999999999999999999998766
Q ss_pred CcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEEC
Q 000054 2504 PSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2504 ~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
.+|.+ .|.+++|+|+| |++|+.|+..+.|++
T Consensus 312 ---~~~~~----~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 312 ---EQLDQ----PISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp ---CCCSS----CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred ---cCCCC----CceEEEECCCCCeEEEEecccccccccc
Confidence 56664 45778999999 999999986665554
No 57
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.92 E-value=1.6e-24 Score=268.65 Aligned_cols=262 Identities=17% Similarity=0.222 Sum_probs=199.9
Q ss_pred EEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcc
Q 000054 2243 IYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAM 2322 (2548)
Q Consensus 2243 VrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~ 2322 (2548)
+..|+..+.....++. +|.+.|++++|+|++++|++|+.||+|++||+.+++.. ..+..|..
T Consensus 48 ~~~~~~~~~~~~~~l~----------gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~--------~~~~~h~~ 109 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQ----------GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT--------HAIKLHCP 109 (380)
T ss_dssp CCCCCCCCCEEEEEEC----------CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE--------EEEECCCT
T ss_pred ccccccceeEEeeccc----------ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc--------eEEecCCC
Confidence 3345555555555553 35699999999999999999999999999999887543 23567777
Q ss_pred cEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCC-----CCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC
Q 000054 2323 DVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPP-----TSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG 2395 (2548)
Q Consensus 2323 ~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~-----~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG 2395 (2548)
.|. +|+|+|+++++++ .|+.|++||+.... ......+.+|.+.|.++.|.|++ +..|++|+.||
T Consensus 110 ~v~~~~~s~~g~~las~~---~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~------~~~l~s~s~D~ 180 (380)
T 3iz6_a 110 WVMECAFAPNGQSVACGG---LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ------ETRLITGSGDQ 180 (380)
T ss_dssp TCCCCEECTTSSEEEECC---SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS------SSCEEEECTTS
T ss_pred CEEEEEECCCCCEEEEee---CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCC------CCEEEEECCCC
Confidence 775 5999999999986 89999999986421 12356788999999999999984 66899999999
Q ss_pred cEEEEeCCccccCceeeeecCCC-CCCCccccccccCC-CCCC--ccCCCCCceEEEcc---------cCCCCCEEEEEE
Q 000054 2396 DVGIHDFRYIATGKTKKHKHSDR-GGSSINTCAHADAQ-TGSG--SKPGDQNGMLWYIP---------KAHLGSVTRIST 2462 (2548)
Q Consensus 2396 tVrLWDLR~l~TGk~l~tl~~~~-~~s~~~~~~vafSp-dGk~--v~s~D~sv~Iwdi~---------~gH~~~VtsLaf 2462 (2548)
+|++|| +.+++.+..+.... .........+.+++ ++.+ .++.|+.+++||+. .+|.+.|++++|
T Consensus 181 ~i~~wd---~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~ 257 (380)
T 3iz6_a 181 TCVLWD---VTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKF 257 (380)
T ss_dssp CEEEEC---TTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEE
T ss_pred cEEEEE---cCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEE
Confidence 999999 55677766552111 11122233445544 6665 67889999999953 479999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEE
Q 000054 2463 VPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2463 SPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
+|++++|++|+.||+|++||+++++.+..+...... ...+. ..|++++|+|+| +++|+.||.|++||
T Consensus 258 ~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-------~~~~~----~~v~~~~~s~~g~~l~~g~~dg~i~vwd 326 (380)
T 3iz6_a 258 FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR-------NDNEL----PIVTSVAFSISGRLLFAGYSNGDCYVWD 326 (380)
T ss_dssp CTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS-------SCCSS----CSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred ecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc-------ccccc----CceEEEEECCCCCEEEEEECCCCEEEEE
Confidence 999999999999999999999999999877321111 01121 236778999999 88999999999999
Q ss_pred CCCCc
Q 000054 2541 LEDYQ 2545 (2548)
Q Consensus 2541 L~sg~ 2545 (2548)
+.++.
T Consensus 327 ~~~~~ 331 (380)
T 3iz6_a 327 TLLAE 331 (380)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 87653
No 58
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.92 E-value=4.8e-23 Score=253.62 Aligned_cols=226 Identities=18% Similarity=0.303 Sum_probs=186.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc------eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK------ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~------~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtV 2295 (2548)
+.+++|+|+|.++++|+.|+.+++|++.... ....+ ..|.+.|.+++|+|++..|++|+.||+|
T Consensus 109 v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~l~t~s~D~~v 178 (354)
T 2pbi_B 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV----------AMHTNYLSACSFTNSDMQILTASGDGTC 178 (354)
T ss_dssp CCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEE----------EECSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred EEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceee----------eccCCcEEEEEEeCCCCEEEEEeCCCcE
Confidence 4788999999999999999999999987532 12222 2366899999999999999999999999
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEE--EcC--CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS--SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp--dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
++||+++++.. ..+.+|...|.+ ++| +|+++++++ .||.|++||+++ ++++..+.+|...|++
T Consensus 179 ~lwd~~~~~~~--------~~~~~h~~~v~~~~~~~~~~g~~l~sgs---~Dg~v~~wd~~~--~~~~~~~~~h~~~v~~ 245 (354)
T 2pbi_B 179 ALWDVESGQLL--------QSFHGHGADVLCLDLAPSETGNTFVSGG---CDKKAMVWDMRS--GQCVQAFETHESDVNS 245 (354)
T ss_dssp EEEETTTCCEE--------EEEECCSSCEEEEEECCCSSCCEEEEEE---TTSCEEEEETTT--CCEEEEECCCSSCEEE
T ss_pred EEEeCCCCeEE--------EEEcCCCCCeEEEEEEeCCCCCEEEEEe---CCCeEEEEECCC--CcEEEEecCCCCCeEE
Confidence 99999987533 347788888864 555 578999986 899999999987 6788899999999999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI 2449 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi 2449 (2548)
++|+|+ +.+|++|+.||+|++||++ +++.+..+.. .........+.|+|+|.+ ++..|+.+++|++
T Consensus 246 v~~~p~-------~~~l~s~s~D~~v~lwd~~---~~~~~~~~~~--~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 246 VRYYPS-------GDAFASGSDDATCRLYDLR---ADREVAIYSK--ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp EEECTT-------SSEEEEEETTSCEEEEETT---TTEEEEEECC--TTCCSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEeCC-------CCEEEEEeCCCeEEEEECC---CCcEEEEEcC--CCcccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence 999998 7899999999999999965 3444444311 111223456789999998 6677889999995
Q ss_pred --------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000054 2450 --------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWD 2482 (2548)
Q Consensus 2450 --------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWD 2482 (2548)
+.+|.+.|++++|+|+|++|++|+.||+|+||+
T Consensus 314 ~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 314 LKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 347999999999999999999999999999996
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.92 E-value=7.5e-24 Score=262.16 Aligned_cols=282 Identities=15% Similarity=0.175 Sum_probs=212.4
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
....|+|++++|++|+.||.|++||+.+++....+. .|.+.|++++|+|++++|++|+.||+|++||+++
T Consensus 101 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 170 (420)
T 3vl1_A 101 AVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ----------AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 170 (420)
T ss_dssp EEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT----------SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc----------cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 445678999999999999999999999887765542 3568999999999999999999999999999997
Q ss_pred CcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec---cCCCeEEEEEccC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC---HEGGARSISVFDN 2377 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g---Hs~~VtSLafsP~ 2377 (2548)
++.. ..+.+|...|.+ |+|+++++++++ .|+.|++||+++ ++.+..+.. |...|.++.+.+.
T Consensus 171 ~~~~--------~~~~~h~~~v~~~~~~~~~~~l~s~~---~d~~v~iwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~ 237 (420)
T 3vl1_A 171 GSNP--------RTLIGHRATVTDIAIIDRGRNVLSAS---LDGTIRLWECGT--GTTIHTFNRKENPHDGVNSIALFVG 237 (420)
T ss_dssp CCCC--------EEEECCSSCEEEEEEETTTTEEEEEE---TTSCEEEEETTT--TEEEEEECBTTBTTCCEEEEEEEEC
T ss_pred CcCc--------eEEcCCCCcEEEEEEcCCCCEEEEEc---CCCcEEEeECCC--CceeEEeecCCCCCCCccEEEEecC
Confidence 7533 346788888874 899999999986 899999999986 566666664 5667777777543
Q ss_pred C--------------CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCC-C--ccCC
Q 000054 2378 D--------------LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGS-G--SKPG 2440 (2548)
Q Consensus 2378 d--------------lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk-~--v~s~ 2440 (2548)
. +...+.+.++++|+.||.|++||++ +++.+..+.. ........+.++|++. + +++.
T Consensus 238 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~g~~ 311 (420)
T 3vl1_A 238 TDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF---SKEQTIQLPS---KFTCSCNSLTVDGNNANYIYAGYE 311 (420)
T ss_dssp CCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT---TCCEEEEECC---TTSSCEEEEEECSSCTTEEEEEET
T ss_pred CcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC---CCceeEEccc---ccCCCceeEEEeCCCCCEEEEEeC
Confidence 1 0011237799999999999999954 5665555421 1223456788999988 4 6778
Q ss_pred CCCceEEEccc---------C-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCC
Q 000054 2441 DQNGMLWYIPK---------A-HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFG 2510 (2548)
Q Consensus 2441 D~sv~Iwdi~~---------g-H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~ 2510 (2548)
++.+++|++.. + |...|.++.+ |++++|++|+.||.|++||+.+.+....+... .... .+.+|.
T Consensus 312 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~-~~~~----~~~~~~ 385 (420)
T 3vl1_A 312 NGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEF-ETPT----FLVSND 385 (420)
T ss_dssp TSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECT-TSCE----EECCSS
T ss_pred CCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceec-cCcc----EEccCC
Confidence 89999999642 2 6778888855 57889999999999999999874322111000 1111 134565
Q ss_pred CceeecEEEEEEcCCe-----EEEEECCCcEEEEECCC
Q 000054 2511 GVVRAGVTDIQVVSRG-----FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2511 ~~V~a~VtsLafSPdG-----LaSGS~DGtIrIWDL~s 2543 (2548)
+. |.+++|+|++ ++++|.+|.+++|++++
T Consensus 386 ~~----v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 386 DA----VSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CC----CCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cc----eEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 44 4567899987 88999999999999976
No 60
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.92 E-value=1.7e-24 Score=264.53 Aligned_cols=260 Identities=10% Similarity=0.028 Sum_probs=186.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCC--ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD--KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg--~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
|.+++|+|+|++|++|+.||.|++||+.++ +....+ .+|.+.|++++|+|++++|++|+.||+|++||
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~----------~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF----------SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB----------CCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE----------ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 688999999999999999999999999987 444333 23668999999999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCC-CCcceeeec-cCCCeEEEEEc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPP-TSSRASITC-HEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~-~k~v~sl~g-Hs~~VtSLafs 2375 (2548)
+.+++.. .....+.+|...|.+ |+|+++++++++ .|+.|++||++... ......+.+ |.+.|++++|+
T Consensus 84 ~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 155 (377)
T 3dwl_C 84 KRPDGTW-----KQTLVLLRLNRAATFVRWSPNEDKFAVGS---GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWH 155 (377)
T ss_dssp -----CC-----CCEEECCCCSSCEEEEECCTTSSCCEEEE---SSSCEEECCC-----CCCCEEECSSCCSCEEEEEEC
T ss_pred cCCCCce-----eeeeEecccCCceEEEEECCCCCEEEEEe---cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEc
Confidence 9877511 122346678888875 889999999986 89999999998632 114667777 99999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
|+ +.+|++|+.||.|++||++. +...... .....+..-....+...+ +|.+
T Consensus 156 ~~-------~~~l~~~~~d~~i~iwd~~~---~~~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~ 206 (377)
T 3dwl_C 156 PN-------NVLLAAGCADRKAYVLSAYV---RDVDAKP------------------EASVWGSRLPFNTVCAEY-PSGG 206 (377)
T ss_dssp TT-------SSEEEEEESSSCEEEEEECC---SSCC-CC------------------CSCSSCSCCCEEEEEECC-CCSS
T ss_pred CC-------CCEEEEEeCCCEEEEEEEEe---cccCCCc------------------cccccccccchhhhhhcc-cCCc
Confidence 98 78999999999999999642 1111000 000000001123334444 8999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC
Q 000054 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD 2533 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D 2533 (2548)
.|++++|+|++++|++|+.||.|++||+.+++..... ...+.+|... |.+++|+|+| |++|+.
T Consensus 207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~~~----v~~~~~s~~~~~l~~~~~- 271 (377)
T 3dwl_C 207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA----------LITVKLSQLP----LRSLLWANESAIVAAGYN- 271 (377)
T ss_dssp SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE----------CCCEECSSSC----EEEEEEEETTEEEEEESS-
T ss_pred eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee----------eEeecCCCCc----eEEEEEcCCCCEEEEEcC-
Confidence 9999999999999999999999999999988762111 0123677654 5677999999 556655
Q ss_pred CcEEEEECCC
Q 000054 2534 GSVKLIQLED 2543 (2548)
Q Consensus 2534 GtIrIWDL~s 2543 (2548)
+.+.+|+...
T Consensus 272 ~~~~~~~~~~ 281 (377)
T 3dwl_C 272 YSPILLQGNE 281 (377)
T ss_dssp SSEEEECCCC
T ss_pred CcEEEEEeCC
Confidence 4455777653
No 61
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.92 E-value=2.9e-23 Score=253.63 Aligned_cols=284 Identities=14% Similarity=0.149 Sum_probs=194.5
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCC---CCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPA---ANVPPPYALASISALQFDH-YGHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~g---hs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVr 2296 (2548)
+.+++|+| ++++|++|+.||.|++||+.+++....+..... ......+|.+.|.+++|+| ++.+|++++.||.|+
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 125 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK 125 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEE
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEE
Confidence 79999999 999999999999999999998765444321100 0001234779999999999 788999999999999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEE--EEcC---CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITS---SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSp---dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
+||+.+++.... +. +...+. .+.+ ++.++++++ .|+.|++||++. .+.+..+.+|.+.|.+
T Consensus 126 iwd~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~d~~~--~~~~~~~~~~~~~v~~ 191 (408)
T 4a11_B 126 VWDTNTLQTADV--------FN-FEETVYSHHMSPVSTKHCLVAVGT---RGPKVQLCDLKS--GSCSHILQGHRQEILA 191 (408)
T ss_dssp EEETTTTEEEEE--------EE-CSSCEEEEEECSSCSSCCEEEEEE---SSSSEEEEESSS--SCCCEEECCCCSCEEE
T ss_pred EeeCCCCcccee--------cc-CCCceeeeEeecCCCCCcEEEEEc---CCCeEEEEeCCC--cceeeeecCCCCcEEE
Confidence 999998754322 11 233333 2444 556899886 899999999986 6778889999999999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC-----------CCCCccccccccCCCCCC--cc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR-----------GGSSINTCAHADAQTGSG--SK 2438 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~-----------~~s~~~~~~vafSpdGk~--v~ 2438 (2548)
++|+|++ ..++++|+.||.|++||++... ..+..+.... .........+.++|+|.+ ++
T Consensus 192 ~~~~~~~------~~ll~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 192 VSWSPRY------DYILATASADSRVKLWDVRRAS--GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp EEECSSC------TTEEEEEETTSCEEEEETTCSS--CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred EEECCCC------CcEEEEEcCCCcEEEEECCCCC--cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 9999983 3479999999999999976321 1222221000 111222344566666665 44
Q ss_pred CCCCCceEEEcccCCC-------------CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCc
Q 000054 2439 PGDQNGMLWYIPKAHL-------------GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPS 2505 (2548)
Q Consensus 2439 s~D~sv~Iwdi~~gH~-------------~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~t 2505 (2548)
+.++.+++|++..+.. ..+........+..+++++.||.|++||+.+++.+..+
T Consensus 264 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~------------- 330 (408)
T 4a11_B 264 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML------------- 330 (408)
T ss_dssp ETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-------------
T ss_pred cCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-------------
Confidence 5566667776533210 11111111223344555566677777777777766655
Q ss_pred ccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2506 SRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2506 l~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+ .|++++|+|++ |++|+.||.|++||+.++.
T Consensus 331 -~~~~~----~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 331 -KGHYK----TVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp -CCCSS----CEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred -ccCCC----eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 56764 45678999999 8999999999999998764
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.92 E-value=1.7e-23 Score=253.38 Aligned_cols=257 Identities=11% Similarity=0.099 Sum_probs=198.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|++++|++|+.||.|++||+.+++....+.. ..|...|.+++|+|++++|++|+.||.|++||++
T Consensus 55 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~ 126 (372)
T 1k8k_C 55 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI--------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 126 (372)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC--------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred ccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEe--------ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEec
Confidence 68999999999999999999999999998876555432 2255889999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECC----------------CCCCCcceeee
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTL----------------APPTSSRASIT 2363 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~----------------t~~~k~v~sl~ 2363 (2548)
.+..... ......+|...|.+ |+|+++++++++ .|+.|++||++ .+..+.+..+.
T Consensus 127 ~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
T 1k8k_C 127 QENDWWV----CKHIKKPIRSTVLSLDWHPNSVLLAAGS---CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199 (372)
T ss_dssp TTTTEEE----EEEECTTCCSCEEEEEECTTSSEEEEEE---TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred CCCccee----eeeeecccCCCeeEEEEcCCCCEEEEEc---CCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence 7652111 11223567777764 899999999986 89999999975 22356778888
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000054 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
+|.+.|.+++|+|+ +.+|++|+.||.|++|| +.+++.+..+
T Consensus 200 ~~~~~v~~~~~~~~-------~~~l~~~~~d~~i~i~d---~~~~~~~~~~----------------------------- 240 (372)
T 1k8k_C 200 SSCGWVHGVCFSAN-------GSRVAWVSHDSTVCLAD---ADKKMAVATL----------------------------- 240 (372)
T ss_dssp CCSSCEEEEEECSS-------SSEEEEEETTTEEEEEE---GGGTTEEEEE-----------------------------
T ss_pred CCCCeEEEEEECCC-------CCEEEEEeCCCEEEEEE---CCCCceeEEE-----------------------------
Confidence 99999999999998 78999999999999999 4456666665
Q ss_pred ceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC--CcEE--EEeccc-----------------ccccccc
Q 000054 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA--AQLV--YHWSKL-----------------HERHTFL 2502 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T--gell--~tL~~~-----------------Hs~hsfl 2502 (2548)
..|...|.+++|+|++.++++| .||.|++||+.+ ++.. ..+... .......
T Consensus 241 -------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
T 1k8k_C 241 -------ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE 312 (372)
T ss_dssp -------ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred -------ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccc
Confidence 6788899999999999999888 999999999987 5421 111000 0000000
Q ss_pred ------cCcccCCCCceeecEEEEEEc-CC----e-EEEEECCCcEEEEECCCC
Q 000054 2503 ------QPSSRGFGGVVRAGVTDIQVV-SR----G-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2503 ------~~tl~GH~~~V~a~VtsLafS-Pd----G-LaSGS~DGtIrIWDL~sg 2544 (2548)
.....+|.+. |++++|. ++ . |+||+.||+|++|+++++
T Consensus 313 ~~~~~~~~~~~~h~~~----v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 313 GSAAAGAGLDSLHKNS----VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ------CCCSSSSSSC----EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred cCccccccccccccCC----cceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 1112478754 4666755 65 4 999999999999999764
No 63
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.92 E-value=4.5e-23 Score=246.53 Aligned_cols=234 Identities=21% Similarity=0.263 Sum_probs=191.6
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
+|.+.|++++|+|++++|++|+.||.|++|++.+++.. ..+.+|...|.+ |+|+++++++++ .|+.|
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~l~s~~---~d~~i 89 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDVAWSSDSNLLVSAS---DDKTL 89 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--------EEECCCSSCEEEEEECTTSSEEEEEE---TTSEE
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc--------hhhccCCCceEEEEEcCCCCEEEEEC---CCCEE
Confidence 46699999999999999999999999999999877532 336788888864 899999999997 89999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
++||++. .+.+..+.+|...|.++.|+|+ ++++++|+.||.|++||+ .+++.+..+... .....
T Consensus 90 ~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~-------~~~l~s~~~d~~i~iwd~---~~~~~~~~~~~~----~~~v~ 153 (312)
T 4ery_A 90 KIWDVSS--GKCLKTLKGHSNYVFCCNFNPQ-------SNLIVSGSFDESVRIWDV---KTGKCLKTLPAH----SDPVS 153 (312)
T ss_dssp EEEETTT--CCEEEEEECCSSCEEEEEECSS-------SSEEEEEETTSCEEEEET---TTCCEEEEECCC----SSCEE
T ss_pred EEEECCC--CcEEEEEcCCCCCEEEEEEcCC-------CCEEEEEeCCCcEEEEEC---CCCEEEEEecCC----CCcEE
Confidence 9999986 6788899999999999999998 789999999999999994 566776665211 22345
Q ss_pred ccccCCCCCC--ccCCCCCceEEEccc---------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc
Q 000054 2427 AHADAQTGSG--SKPGDQNGMLWYIPK---------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKL 2495 (2548)
Q Consensus 2427 ~vafSpdGk~--v~s~D~sv~Iwdi~~---------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~ 2495 (2548)
.+.+++++.. +++.++.+++|++.. .|...+..++|+|++++|++++.||.|++||+++++.+..+
T Consensus 154 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--- 230 (312)
T 4ery_A 154 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--- 230 (312)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE---
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE---
Confidence 6788999887 677889999999632 45678999999999999999999999999999999988877
Q ss_pred ccccccccCcccCCCCceeecEEEEEEc-CCe--EEEEECCCcEEEEECCCCc
Q 000054 2496 HERHTFLQPSSRGFGGVVRAGVTDIQVV-SRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLafS-PdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|...+... . ..++ +++ +++|+.||.|++||+.++.
T Consensus 231 -----------~~~~~~~~~~-~-~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 231 -----------TGHKNEKYCI-F-ANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270 (312)
T ss_dssp -----------CSSCCSSSCC-C-EEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred -----------EecCCceEEE-E-EEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence 3444332221 1 1344 445 8899999999999998764
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.92 E-value=7.4e-23 Score=257.83 Aligned_cols=234 Identities=18% Similarity=0.291 Sum_probs=192.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.+ +++++++|+.||+|++||+.+++.+..+. +|.+.|++++|++++ .+++|+.||+|++||++
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~----------~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLS----------GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEEC----------CCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEe----------CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 456665 56899999999999999999999888774 256999999999988 89999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--Ec--CCCCEEEEEeccCCCCeEEEEECCCCCCC--------------------
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--IT--SSGSVIAAAGHSSNGINVVVWDTLAPPTS-------------------- 2357 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fS--pdGslLATgG~SS~DGtVrIWDl~t~~~k-------------------- 2357 (2548)
+++.. ..+.+|...|.+ ++ ++++++++++ .|+.|++||+......
T Consensus 192 ~~~~~--------~~~~~h~~~v~~l~~~~~~~~~~l~s~s---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (464)
T 3v7d_B 192 KGCCT--------HVFEGHNSTVRCLDIVEYKNIKYIVTGS---RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260 (464)
T ss_dssp TTEEE--------EEECCCSSCEEEEEEEESSSCEEEEEEE---TTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred CCcEE--------EEECCCCCccEEEEEecCCCCCEEEEEc---CCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence 87533 346788888875 44 6788999986 8999999999863211
Q ss_pred -cceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000054 2358 -SRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2358 -~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
.+..+.+|...|.++... +.++++|+.||.|++||+ .+++.+..+
T Consensus 261 ~~~~~~~~~~~~v~~~~~~---------~~~l~~~~~d~~i~vwd~---~~~~~~~~~---------------------- 306 (464)
T 3v7d_B 261 YFVGVLRGHMASVRTVSGH---------GNIVVSGSYDNTLIVWDV---AQMKCLYIL---------------------- 306 (464)
T ss_dssp TEEEEECCCSSCEEEEEEE---------TTEEEEEETTSCEEEEET---TTTEEEEEE----------------------
T ss_pred EEEEEccCccceEEEEcCC---------CCEEEEEeCCCeEEEEEC---CCCcEEEEe----------------------
Confidence 145677899999988543 559999999999999994 456666665
Q ss_pred ccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeec
Q 000054 2437 SKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAG 2516 (2548)
Q Consensus 2437 v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~ 2516 (2548)
.+|...|.+++|+|+++++++|+.||.|++||+++++++.++ .+|...
T Consensus 307 --------------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--------------~~h~~~---- 354 (464)
T 3v7d_B 307 --------------SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL--------------QGHTAL---- 354 (464)
T ss_dssp --------------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE--------------CCCSSC----
T ss_pred --------------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE--------------eCCCCc----
Confidence 679999999999999999999999999999999999988877 567644
Q ss_pred EEEEEEcCCeEEEEECCCcEEEEECCCCc
Q 000054 2517 VTDIQVVSRGFLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2517 VtsLafSPdGLaSGS~DGtIrIWDL~sg~ 2545 (2548)
|.++++++.-+++|+.||+|++||+.++.
T Consensus 355 v~~~~~~~~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 355 VGLLRLSDKFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp EEEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEEcCCEEEEEeCCCcEEEEECCCCc
Confidence 46668886559999999999999998754
No 65
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.92 E-value=9.6e-24 Score=260.37 Aligned_cols=267 Identities=17% Similarity=0.209 Sum_probs=179.3
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC------CCcEEE
Q 000054 2224 AFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL------DGTVCT 2297 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~------DGtVrV 2297 (2548)
.+...+++.+ +.++.+.....|++.... +..|.+.|++++|+|||++|++|+. ||+|++
T Consensus 10 g~d~g~~~~~-~~~~g~~~~~~w~~p~~~--------------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~ 74 (357)
T 4g56_B 10 GVDLGTENLY-FQSNGSSKGSAWGRPVTA--------------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWV 74 (357)
T ss_dssp ---------------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEE
T ss_pred CCCCCccceE-EecCCCccccccCCCCCC--------------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEE
Confidence 3343344444 445556778889865321 2346789999999999999999998 788999
Q ss_pred EEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc--eeeeccCCCeEEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR--ASITCHEGGARSIS 2373 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v--~sl~gHs~~VtSLa 2373 (2548)
|+..++..... ......+|...|.+ |+|++.++++ + .||+|++||+.++..... ....+|.+.|++++
T Consensus 75 ~~~~~~~~~~~----~~~~~~~~~~~V~~~~~s~d~~~l~~-s---~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 75 FKDPEGAPNES----LCTAGVQTEAGVTDVAWVSEKGILVA-S---DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp ESSCC---CGG----GCSEEEECSSCEEEEEEETTTEEEEE-E---TTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred EECCCCCccee----EecccCCCCCCEEEEEEcCCCCEEEE-E---CCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence 99877643221 11224467777764 8898876654 3 799999999986432222 33458999999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC---ccCCCCCceEEEcc
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG---SKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~---v~s~D~sv~Iwdi~ 2450 (2548)
|+|+ +++|++|+.||+|++|| ..+++.+..+.. + ......+++++++.. .++.|+.+++||+.
T Consensus 147 ~spd-------g~~l~sgs~dg~v~iwd---~~~~~~~~~~~~---h-~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~ 212 (357)
T 4g56_B 147 VFSD-------GTQAVSGGKDFSVKVWD---LSQKAVLKSYNA---H-SSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212 (357)
T ss_dssp ECSS-------SSEEEEEETTSCEEEEE---TTTTEEEEEECC---C-SSCEEEEEECTTCSSCEEEEETTSCEEECCTT
T ss_pred ECCC-------CCEEEEEeCCCeEEEEE---CCCCcEEEEEcC---C-CCCEEEEEEccCCCceeeeeccCCceEEEECC
Confidence 9998 78999999999999999 556777776621 1 223456788888753 56788999999853
Q ss_pred c----------CCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEE
Q 000054 2451 K----------AHLGSVTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2451 ~----------gH~~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
. .|...|++++|+|+ +.+|++|+.|+.|++||+++++++.++ .+|.+. |++
T Consensus 213 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~--------------~~~~~~----v~~ 274 (357)
T 4g56_B 213 KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS--------------AVHSQN----ITG 274 (357)
T ss_dssp SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE--------------CCCSSC----EEE
T ss_pred CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE--------------ecccee----EEE
Confidence 2 46678999999997 578999999999999999999887766 567643 567
Q ss_pred EEEcCCe---EEEEECCCcEEEEECCCCc
Q 000054 2520 IQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2520 LafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
++|+|++ |++|+.||+|+|||++++.
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 8999987 8899999999999998874
No 66
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.91 E-value=5.7e-23 Score=258.86 Aligned_cols=272 Identities=13% Similarity=0.151 Sum_probs=215.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEc--cCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFD--HYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFS--PdG~~LaSGS~DGtVrVWD 2299 (2548)
+.+++|+|++ ++++|+.||+|++||+.+++.+..+.. |.+.|.+++|+ ++++++++|+.||+|++||
T Consensus 165 V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~----------h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd 233 (464)
T 3v7d_B 165 VWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG----------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233 (464)
T ss_dssp EEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred EEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC----------CCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence 6899999988 999999999999999999988877642 55899999998 4789999999999999999
Q ss_pred cCCCcccccccC---------------ccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec
Q 000054 2300 LEVGGRSNVRPM---------------ESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC 2364 (2548)
Q Consensus 2300 l~tgk~i~i~p~---------------~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g 2364 (2548)
++++........ .......+|...+.+++++++++++++ .|+.|++||+++ .+++..+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~---~d~~i~vwd~~~--~~~~~~~~~ 308 (464)
T 3v7d_B 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS---YDNTLIVWDVAQ--MKCLYILSG 308 (464)
T ss_dssp CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEE---TTSCEEEEETTT--TEEEEEECC
T ss_pred CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEe---CCCeEEEEECCC--CcEEEEecC
Confidence 987653211100 013457788999999999999999997 899999999986 678888999
Q ss_pred cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCc
Q 000054 2365 HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNG 2444 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv 2444 (2548)
|...|.+++|+|+ ++.+++|+.||.|++|| +.+++.+..+.. +. .....+.++++--.+++.|+.+
T Consensus 309 ~~~~v~~~~~~~~-------~~~l~sg~~dg~i~vwd---~~~~~~~~~~~~---h~-~~v~~~~~~~~~l~s~s~dg~v 374 (464)
T 3v7d_B 309 HTDRIYSTIYDHE-------RKRCISASMDTTIRIWD---LENGELMYTLQG---HT-ALVGLLRLSDKFLVSAAADGSI 374 (464)
T ss_dssp CSSCEEEEEEETT-------TTEEEEEETTSCEEEEE---TTTTEEEEEECC---CS-SCEEEEEECSSEEEEEETTSEE
T ss_pred CCCCEEEEEEcCC-------CCEEEEEeCCCcEEEEE---CCCCcEEEEEeC---CC-CcEEEEEEcCCEEEEEeCCCcE
Confidence 9999999999998 78999999999999999 556777777622 11 2234455553222277889999
Q ss_pred eEEEccc-------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2445 MLWYIPK-------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2445 ~Iwdi~~-------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
++|++.. .|...+..++|+|+++++++|+ ||.|++||+++++++..+ +.+|.+ .|
T Consensus 375 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~-------------~~~~~~----~v 436 (464)
T 3v7d_B 375 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHAN-------------ILKDAD----QI 436 (464)
T ss_dssp EEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESC-------------TTTTCS----EE
T ss_pred EEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehh-------------hccCCC----cE
Confidence 9999643 3666788899999999999998 999999999999998754 245543 45
Q ss_pred EEEEEcCCe-EEEEECCCcEEEEEC
Q 000054 2518 TDIQVVSRG-FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2518 tsLafSPdG-LaSGS~DGtIrIWDL 2541 (2548)
++++|+++. +++++.||.+.+|-+
T Consensus 437 ~~v~~~~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 437 WSVNFKGKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEE
T ss_pred EEEEecCCEEEEEEEeCCeEEEEEe
Confidence 777998666 567777876665543
No 67
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.7e-23 Score=252.84 Aligned_cols=239 Identities=16% Similarity=0.203 Sum_probs=177.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCC-------ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD-------KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg-------~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt 2294 (2548)
|.+++|+|++++|++|+.|++|+|||.... +.+..+ . +|.+.|++++|+|++++|++|+.||+
T Consensus 61 v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~---~-------~h~~~V~~v~~sp~g~~las~s~D~~ 130 (330)
T 2hes_X 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII---E-------GHENEVKGVAWSNDGYYLATCSRDKS 130 (330)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE---C-----------CEEEEEECTTSCEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE---c-------CCCCcEEEEEECCCCCEEEEEeCCCE
Confidence 689999999999999999999999998542 223333 2 35689999999999999999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
|++||++.... .......+.+|...|.+ |+|++.+|++++ .|++|++||......+++..+.+|.+.|+++
T Consensus 131 v~iwd~~~~~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s---~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~ 203 (330)
T 2hes_X 131 VWIWETDESGE----EYECISVLQEHSQDVKHVIWHPSEALLASSS---YDDTVRIWKDYDDDWECVAVLNGHEGTVWSS 203 (330)
T ss_dssp EEEEECCTTCC----CCEEEEEECCCSSCEEEEEECSSSSEEEEEE---TTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred EEEEeccCCCC----CeEEEEEeccCCCceEEEEECCCCCEEEEEc---CCCeEEEEECCCCCeeEEEEccCCCCcEEEE
Confidence 99999954321 11123457789888874 899999999997 8999999998753335788899999999999
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCcccc-C----ceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceE
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIAT-G----KTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGML 2446 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~T-G----k~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~I 2446 (2548)
+|+|+. .+..|++|+.||+|++||++.... . .+...+ ..........++|++++.+ .++.|+.+++
T Consensus 204 ~~~~~~-----~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~v~~s~~~~l~s~~~dg~v~i 275 (330)
T 2hes_X 204 DFDKTE-----GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL---PDVHKRQVYNVAWGFNGLIASVGADGVLAV 275 (330)
T ss_dssp EECCSS-----SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEEC---CSCCSSCEEEEEECTTSCEEEEETTSCEEE
T ss_pred EecCCC-----CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeec---ccccccceEEEEEcCCCEEEEEeCCCEEEE
Confidence 999973 145899999999999999642110 0 122222 1111223456677877755 6778999999
Q ss_pred EEcc-----------cCCCC-CEEEEEEeC--CCCEEEEEeCCCcEEEEECCC
Q 000054 2447 WYIP-----------KAHLG-SVTRISTVP--NTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2447 wdi~-----------~gH~~-~VtsLafSP--dG~~LaSGS~DGtIrIWDl~T 2485 (2548)
|+.. .+|.. .|.+++|+| ++++|++|+.||+|++||+++
T Consensus 276 w~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 276 YEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 9842 35776 899999999 789999999999999999864
No 68
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.91 E-value=3.6e-23 Score=248.04 Aligned_cols=259 Identities=11% Similarity=0.123 Sum_probs=200.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH-RFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~-~LaSGS~DGtVrVWDl 2300 (2548)
+.+++|+|++++|++|+.||.|++||+.++.......... .|...|++++|+|+++ +|++|+.||.|++||+
T Consensus 14 v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-------RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-------ECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred EEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-------ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 6899999999999999999999999999877211111111 2558999999999999 9999999999999999
Q ss_pred -CCCcccccccCccceeccC--CcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCC-------CCcceeeeccCCC
Q 000054 2301 -EVGGRSNVRPMESCLCFSS--HAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPP-------TSSRASITCHEGG 2368 (2548)
Q Consensus 2301 -~tgk~i~i~p~~s~~t~~g--H~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~-------~k~v~sl~gHs~~ 2368 (2548)
.++.. ..+.+ |...|.+ +++ ++.+++++ .|+.|++||++... .+++..+. |.+.
T Consensus 87 ~~~~~~---------~~~~~~~~~~~v~~l~~~~-~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (342)
T 1yfq_A 87 IGSPSF---------QALTNNEANLGICRICKYG-DDKLIAAS---WDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK 152 (342)
T ss_dssp SSSSSE---------EECBSCCCCSCEEEEEEET-TTEEEEEE---TTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC
T ss_pred ccCCce---------EeccccCCCCceEEEEeCC-CCEEEEEc---CCCeEEEEcccccccccccccCCeeeEEe-eCCc
Confidence 76642 23566 8888864 788 99999987 89999999986400 23445555 8899
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCcee-eeecCCCCCCCccccccccCC-CCCC--ccCCCCCc
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTK-KHKHSDRGGSSINTCAHADAQ-TGSG--SKPGDQNG 2444 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l-~tl~~~~~~s~~~~~~vafSp-dGk~--v~s~D~sv 2444 (2548)
|.+++|+|+ .+++|+.||.|++||++.. +... .... .........+.++| ++.. +++.++.+
T Consensus 153 v~~~~~~~~---------~l~~~~~d~~i~i~d~~~~--~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i 218 (342)
T 1yfq_A 153 IFTMDTNSS---------RLIVGMNNSQVQWFRLPLC--EDDNGTIEE---SGLKYQIRDVALLPKEQEGYACSSIDGRV 218 (342)
T ss_dssp EEEEEECSS---------EEEEEESTTEEEEEESSCC--TTCCCEEEE---CSCSSCEEEEEECSGGGCEEEEEETTSEE
T ss_pred eEEEEecCC---------cEEEEeCCCeEEEEECCcc--ccccceeee---cCCCCceeEEEECCCCCCEEEEEecCCcE
Confidence 999999987 4999999999999996530 2211 1110 01122346778899 8887 66778889
Q ss_pred eEEEccc--------------CCCC---------CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccccccc
Q 000054 2445 MLWYIPK--------------AHLG---------SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTF 2501 (2548)
Q Consensus 2445 ~Iwdi~~--------------gH~~---------~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsf 2501 (2548)
++|+... +|.. .|.+++|+|++++|++|+.||.|++||+.+++.+.++
T Consensus 219 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--------- 289 (342)
T 1yfq_A 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF--------- 289 (342)
T ss_dssp EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC---------
T ss_pred EEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh---------
Confidence 9988532 3544 9999999999999999999999999999999998766
Q ss_pred ccCcccCC-CCceeecEEEEEEcCCe--EEEEECCCc
Q 000054 2502 LQPSSRGF-GGVVRAGVTDIQVVSRG--FLSCGGDGS 2535 (2548)
Q Consensus 2502 l~~tl~GH-~~~V~a~VtsLafSPdG--LaSGS~DGt 2535 (2548)
.+| .+.| .+++ |+| |++|+.||+
T Consensus 290 -----~~~h~~~v----~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 290 -----AKFNEDSV----VKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp -----CCCSSSEE----EEEE--ECSSEEEEEEECTH
T ss_pred -----hcccCCCc----eEec--CCCCeEEEEecCCc
Confidence 565 6544 5556 777 899999999
No 69
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.9e-24 Score=276.99 Aligned_cols=242 Identities=13% Similarity=0.078 Sum_probs=175.7
Q ss_pred cCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC------CCEEEEEeCCCcEEEEEcC
Q 000054 2228 HPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY------GHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2228 SPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd------G~~LaSGS~DGtVrVWDl~ 2301 (2548)
+|+++.+++|+.|++|+|||+.+++....... ...+|.+.|.+++|+|+ +.+||+|+.||+|++||+.
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~------~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~ 243 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQ------TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEII 243 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEE------EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECC
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEE------EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcC
Confidence 58899999999999999999987764321100 00124588999999996 5799999999999999998
Q ss_pred CCcccc---cccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE--E
Q 000054 2302 VGGRSN---VRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS--V 2374 (2548)
Q Consensus 2302 tgk~i~---i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa--f 2374 (2548)
.+.... .........+.+|...|.+ |+++ ..|++|+ .||+|++||++++ ..+...+.+|.+.|++|+ |
T Consensus 244 ~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs---~DgtV~lWD~~~~-~~~~~~~~~H~~~V~sv~~~~ 318 (524)
T 2j04_B 244 DNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGF---KNGFVAEFDLTDP-EVPSFYDQVHDSYILSVSTAY 318 (524)
T ss_dssp CCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEE---TTSEEEEEETTBC-SSCSEEEECSSSCEEEEEEEC
T ss_pred CCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEe---CCCEEEEEECCCC-CCceEEeecccccEEEEEEEc
Confidence 764221 0111223457788888875 6765 4788885 8999999999863 345667889999999994 4
Q ss_pred ccCCCCCCCCC-CEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2375 FDNDLGSGSVS-PLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2375 sP~dlg~gs~g-~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
+|+ + .+|+||+.||+|+|||+| +++++..+ .+|
T Consensus 319 s~~-------g~~~laS~S~D~tvklWD~~---~~~~~~~~------------------------------------~~~ 352 (524)
T 2j04_B 319 SDF-------EDTVVSTVAVDGYFYIFNPK---DIATTKTT------------------------------------VSR 352 (524)
T ss_dssp CTT-------SCCEEEEEETTSEEEEECGG---GHHHHCEE------------------------------------EEE
T ss_pred CCC-------CCeEEEEeccCCeEEEEECC---CCCccccc------------------------------------ccc
Confidence 554 5 799999999999999965 34443333 334
Q ss_pred C--CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEE
Q 000054 2454 L--GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS 2529 (2548)
Q Consensus 2454 ~--~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS 2529 (2548)
. ..|.+++|+|+++.+++++.|++|++||++++.++.++ .+|.+ .|++++|+|+| |++
T Consensus 353 ~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l--------------~gH~~----~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 353 FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL--------------VSRET----TITAIGVSRLHPMVLA 414 (524)
T ss_dssp CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE--------------EECSS----CEEEEECCSSCCBCEE
T ss_pred cccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee--------------ecCCC----ceEEEEeCCCCCeEEE
Confidence 3 35789999999999999999999999999998877655 56765 45777999999 999
Q ss_pred EECCCcEEEEECCCC
Q 000054 2530 CGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2530 GS~DGtIrIWDL~sg 2544 (2548)
|+.||+|++||+..+
T Consensus 415 gs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 415 GSADGSLIITNAARR 429 (524)
T ss_dssp EETTTEEECCBSCSS
T ss_pred EECCCEEEEEechHh
Confidence 999999999998654
No 70
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.91 E-value=5.9e-23 Score=258.31 Aligned_cols=261 Identities=16% Similarity=0.232 Sum_probs=203.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++ ++++++++|+.||.|++||..+++....+.. |.+.|++++| +++++++|+.||+|++||++
T Consensus 136 v~~~~--~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~----------h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 136 VYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTG----------HTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECC----------CSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EEEEE--ECCCEEEEEeCCCeEEEEeCCCCeEEEEEcC----------CCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 46666 5899999999999999999999988877642 5589999999 78999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCC-cceeeeccCCCeEEEEEccCCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS-SRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k-~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
+++.. ..+.+|...|.++..++..+++++ .||.|++||+...... ....+.+|...|.++.+.
T Consensus 202 ~~~~~--------~~~~~h~~~v~~l~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~----- 265 (435)
T 1p22_A 202 TGEML--------NTLIHHCEAVLHLRFNNGMMVTCS---KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD----- 265 (435)
T ss_dssp SCCEE--------EEECCCCSCEEEEECCTTEEEEEE---TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE-----
T ss_pred CCcEE--------EEEcCCCCcEEEEEEcCCEEEEee---CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC-----
Confidence 88643 346788888988766778999986 8999999999863211 126778999999999993
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc--------c
Q 000054 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI--------P 2450 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi--------~ 2450 (2548)
+.++++|+.||.|++|| +.+++.+..+... . .....+.+ ++.. +++.|+.+++|++ +
T Consensus 266 ----~~~l~s~~~dg~i~vwd---~~~~~~~~~~~~~---~-~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 332 (435)
T 1p22_A 266 ----DKYIVSASGDRTIKVWN---TSTCEFVRTLNGH---K-RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL 332 (435)
T ss_dssp ----TTEEEEEETTSEEEEEE---TTTCCEEEEEECC---S-SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred ----CCEEEEEeCCCeEEEEE---CCcCcEEEEEcCC---C-CcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 45999999999999999 4567777766321 1 11233344 3444 7788999999995 3
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc---------EEEEecccccccccccCcccCCCCceeecEEEEE
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ---------LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge---------ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa 2521 (2548)
.+|...|.+++| ++.+|++|+.||.|++||+.+++ ++.++ .+|.+.| ++++
T Consensus 333 ~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--------------~~h~~~v----~~l~ 392 (435)
T 1p22_A 333 EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL--------------VEHSGRV----FRLQ 392 (435)
T ss_dssp CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE--------------CCCSSCC----CCEE
T ss_pred eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec--------------cCCCCCe----EEEE
Confidence 579999999999 78999999999999999998765 55544 6777655 4557
Q ss_pred EcCCeEEEEECCCcEEEEECCCCc
Q 000054 2522 VVSRGFLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2522 fSPdGLaSGS~DGtIrIWDL~sg~ 2545 (2548)
|++..|++|+.||+|++||+.++.
T Consensus 393 ~~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 393 FDEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp ECSSCEEECCSSSEEEEEC-----
T ss_pred eCCCEEEEEeCCCEEEEEECCCCC
Confidence 844449999999999999998753
No 71
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.91 E-value=1.9e-22 Score=253.76 Aligned_cols=262 Identities=18% Similarity=0.224 Sum_probs=211.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++ ++|+++++|+.||+|++||+.+++.+..+. +|.+.|++++|+ ++.+++|+.||+|++||+.
T Consensus 122 ~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~----------~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 122 ITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLV----------GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp EEEEE--EETTEEEEEETTSCEEEEETTTCCEEEECC----------CCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred EEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEEc----------CCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 35555 568999999999999999999998877763 356899999997 6799999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
+++.. ..+.+|...|.++..+++.+++++ .||.|++||+.. ++.+..+.+|...|.++.+.
T Consensus 188 ~~~~~--------~~~~~h~~~v~~~~~~~~~l~s~s---~dg~i~~wd~~~--~~~~~~~~~~~~~v~~~~~~------ 248 (445)
T 2ovr_B 188 TGECI--------HTLYGHTSTVRCMHLHEKRVVSGS---RDATLRVWDIET--GQCLHVLMGHVAAVRCVQYD------ 248 (445)
T ss_dssp TTEEE--------EEECCCSSCEEEEEEETTEEEEEE---TTSEEEEEESSS--CCEEEEEECCSSCEEEEEEC------
T ss_pred cCcEE--------EEECCCCCcEEEEEecCCEEEEEe---CCCEEEEEECCC--CcEEEEEcCCcccEEEEEEC------
Confidence 87533 346789999988766788999986 899999999986 67888899999999999983
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc--------cc
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI--------PK 2451 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi--------~~ 2451 (2548)
+..+++|+.||.|++|| ..+++.+..+.. +. .....+.+ ++.. +++.++.+++|++ +.
T Consensus 249 ---~~~l~~~~~dg~i~iwd---~~~~~~~~~~~~---~~-~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 316 (445)
T 2ovr_B 249 ---GRRVVSGAYDFMVKVWD---PETETCLHTLQG---HT-NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT 316 (445)
T ss_dssp ---SSCEEEEETTSCEEEEE---GGGTEEEEEECC---CS-SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ---CCEEEEEcCCCEEEEEE---CCCCcEeEEecC---CC-CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc
Confidence 45999999999999999 556777766621 11 12233444 5555 6778899999995 34
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEE
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCG 2531 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS 2531 (2548)
+|...+.++.+ +++++++|+.||.|++||+++++.+.++.. ..+|.. .|++++|+++-+++|+
T Consensus 317 ~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~----~v~~~~~~~~~l~s~~ 379 (445)
T 2ovr_B 317 GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQG-----------PNKHQS----AVTCLQFNKNFVITSS 379 (445)
T ss_dssp CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECS-----------TTSCSS----CEEEEEECSSEEEEEE
T ss_pred CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEcc-----------CCCCCC----CEEEEEECCCEEEEEe
Confidence 68888988887 467999999999999999999999987721 123543 4577789866699999
Q ss_pred CCCcEEEEECCCCc
Q 000054 2532 GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2532 ~DGtIrIWDL~sg~ 2545 (2548)
.||+|++||+.++.
T Consensus 380 ~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 380 DDGTVKLWDLKTGE 393 (445)
T ss_dssp TTSEEEEEETTTCC
T ss_pred CCCeEEEEECCCCc
Confidence 99999999998874
No 72
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.91 E-value=5.9e-23 Score=258.82 Aligned_cols=248 Identities=14% Similarity=0.272 Sum_probs=195.5
Q ss_pred EEEEEEcCC-CCEEEEEECCCeEEEEEcCC----------CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC-EEEEE
Q 000054 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGK----------DKATATYGVLPAANVPPPYALASISALQFDHYGH-RFASA 2289 (2548)
Q Consensus 2222 V~~VsfSPd-G~~LASGS~DGsVrLWDl~t----------g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~-~LaSG 2289 (2548)
+.+++|+|+ +.++++|+.||.|++||+.+ ......+. +|.+.|++++|+|++. +|++|
T Consensus 131 v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~----------~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 131 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR----------GHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp CSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE----------CCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec----------CCCCCeEEEEeCCCCCCeEEEE
Confidence 588999997 67999999999999999986 34444443 3568899999999988 99999
Q ss_pred eCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCC-CCcceeeecc
Q 000054 2290 ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPP-TSSRASITCH 2365 (2548)
Q Consensus 2290 S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~-~k~v~sl~gH 2365 (2548)
+.||+|++||+.++.... ........+.+|...|.+ |+| ++.++++++ .|+.|++||++... .+.+..+..|
T Consensus 201 ~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~---~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEH-RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA---DDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp CTTSCEEEEETTSCCBGG-GEEECSEEECCCSSCEEEEEECSSCTTEEEEEE---TTSEEEEEETTCSCSSSCSEEEECC
T ss_pred eCCCeEEEEeCCCCCCCC-ceeccceeecCCCCCEeeeEEeCCCCCEEEEEe---CCCeEEEEECCCCCCCcceeEeecC
Confidence 999999999998753211 111123446688888864 788 678888886 89999999998632 2567788899
Q ss_pred CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCce
Q 000054 2366 EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGM 2445 (2548)
Q Consensus 2366 s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~ 2445 (2548)
...|++++|+|++ ..++++|+.||.|++||+|.. +..+..+
T Consensus 277 ~~~v~~i~~~p~~------~~~l~tg~~dg~v~vwd~~~~--~~~~~~~------------------------------- 317 (430)
T 2xyi_A 277 TAEVNCLSFNPYS------EFILATGSADKTVALWDLRNL--KLKLHSF------------------------------- 317 (430)
T ss_dssp SSCEEEEEECSSC------TTEEEEEETTSEEEEEETTCT--TSCSEEE-------------------------------
T ss_pred CCCeEEEEeCCCC------CCEEEEEeCCCeEEEEeCCCC--CCCeEEe-------------------------------
Confidence 9999999999983 458999999999999997631 2233333
Q ss_pred EEEcccCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCC--------------cEEEEecccccccccccCcccCCC
Q 000054 2446 LWYIPKAHLGSVTRISTVPNTS-LFLTGSKDGDVKLWDAKAA--------------QLVYHWSKLHERHTFLQPSSRGFG 2510 (2548)
Q Consensus 2446 Iwdi~~gH~~~VtsLafSPdG~-~LaSGS~DGtIrIWDl~Tg--------------ell~tL~~~Hs~hsfl~~tl~GH~ 2510 (2548)
.+|.+.|++++|+|+++ +|++++.||.|+|||+... +++.. +.+|.
T Consensus 318 -----~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--------------~~~h~ 378 (430)
T 2xyi_A 318 -----ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI--------------HGGHT 378 (430)
T ss_dssp -----ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE--------------CCCCS
T ss_pred -----ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEE--------------cCCCC
Confidence 57999999999999984 7999999999999999872 33332 36676
Q ss_pred CceeecEEEEEEcCCe---EEEEECCCcEEEEECCCCc
Q 000054 2511 GVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2511 ~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+ .|.+++|+|++ +++++.||.|++|++.++.
T Consensus 379 ~----~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 379 A----KISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp S----CEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred C----CceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 4 35777999998 8899999999999997643
No 73
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.91 E-value=8.3e-23 Score=264.25 Aligned_cols=280 Identities=15% Similarity=0.177 Sum_probs=219.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCC----ceeEEEeccCCCCCCCCCCCCC-eEEEEEcc--CCCEEEEEeCCCc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD----KATATYGVLPAANVPPPYALAS-ISALQFDH--YGHRFASAALDGT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg----~~l~t~~~l~ghs~~~~~H~~~-VtsVaFSP--dG~~LaSGS~DGt 2294 (2548)
+.+++|+|+|++|++++ ++.|++||+.++ +....+.. |.+. |++++|+| ++++|++|+.||+
T Consensus 21 v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~----------h~~~~v~~~~~sp~~~~~~l~s~~~dg~ 89 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTG----------HGSSVVTTVKFSPIKGSQYLCSGDESGK 89 (615)
T ss_dssp CCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECT----------TTTSCEEEEEECSSTTCCEEEEEETTSE
T ss_pred eeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEec----------CCCceEEEEEECcCCCCCEEEEecCCCE
Confidence 58889999999999998 889999999988 77666632 5588 99999999 9999999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCC----CeEEEEECCCCCCCcceeeeccCCC
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNG----INVVVWDTLAPPTSSRASITCHEGG 2368 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~D----GtVrIWDl~t~~~k~v~sl~gHs~~ 2368 (2548)
|++||+.+++............+..|...|.+ |+|+++++++++ .+ +.|.+||. .+.+..+.+|.+.
T Consensus 90 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~~~~~~~v~~~d~----~~~~~~~~~~~~~ 162 (615)
T 1pgu_A 90 VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG---EGRDNFGVFISWDS----GNSLGEVSGHSQR 162 (615)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE---CCSSCSEEEEETTT----CCEEEECCSCSSC
T ss_pred EEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEec---cCCCCccEEEEEEC----CCcceeeecCCcc
Confidence 99999975521100011122346678888874 899999999987 45 68889984 4678888999999
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC-CCC--ccCCCCCce
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT-GSG--SKPGDQNGM 2445 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd-Gk~--v~s~D~sv~ 2445 (2548)
|++++|+|++ ...+++|+.||.|++|| ..+++.+..+..... .......+.++|+ +++ +++.++.++
T Consensus 163 v~~~~~~~~~------~~~l~~~~~d~~v~vwd---~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 163 INACHLKQSR------PMRSMTVGDDGSVVFYQ---GPPFKFSASDRTHHK-QGSFVRDVEFSPDSGEFVITVGSDRKIS 232 (615)
T ss_dssp EEEEEECSSS------SCEEEEEETTTEEEEEE---TTTBEEEEEECSSSC-TTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred EEEEEECCCC------CcEEEEEeCCCcEEEEe---CCCcceeeeecccCC-CCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence 9999999993 33899999999999999 556677766632111 1114567889999 887 567789999
Q ss_pred EEEc--------c-c---CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCce
Q 000054 2446 LWYI--------P-K---AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVV 2513 (2548)
Q Consensus 2446 Iwdi--------~-~---gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V 2513 (2548)
+|++ + . +|...|.+++|+ ++++|++++.||.|++||+++++.+..+. .+...+
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--------------~~~~~~ 297 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT--------------LDKQQL 297 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE--------------CCTTCG
T ss_pred EEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc--------------CCCCcc
Confidence 9984 2 4 899999999999 99999999999999999999999988773 222222
Q ss_pred eecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2514 RAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2514 ~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
...+.++.++... +++++.||.|++||+.++
T Consensus 298 ~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 298 GNQQVGVVATGNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp GGCEEEEEEEETTEEEEEETTSCEEEEETTEE
T ss_pred cCceeEEEeCCCCeEEEEECCCCEEEEECCCC
Confidence 2345666776333 999999999999999864
No 74
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.1e-23 Score=269.03 Aligned_cols=260 Identities=10% Similarity=0.050 Sum_probs=181.8
Q ss_pred EEEEEEcCC------CCEEEEEECCCeEEEEEcCCCceeE--EEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2222 TRAFSSHPL------RPFFLVGSSNTHIYLWEFGKDKATA--TYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2222 V~~VsfSPd------G~~LASGS~DGsVrLWDl~tg~~l~--t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
+.+++|+|+ +.+||+|+.||+|+|||+.++.... .+. .........+|.+.|++++|++++ .|++|+.||
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~-~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dg 287 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM-CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNG 287 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC-CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTS
T ss_pred EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee-ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCC
Confidence 689999997 5799999999999999998764320 000 000000113466899999999864 899999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE----EcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC-
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY----ITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG- 2367 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a----fSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~- 2367 (2548)
+|++||++++.. ....+.+|...|.+ ++++| ++|++++ .|++|+|||++. .++...+.+|..
T Consensus 288 tV~lWD~~~~~~-------~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S---~D~tvklWD~~~--~~~~~~~~~~~~~ 355 (524)
T 2j04_B 288 FVAEFDLTDPEV-------PSFYDQVHDSYILSVSTAYSDFEDTVVSTVA---VDGYFYIFNPKD--IATTKTTVSRFRG 355 (524)
T ss_dssp EEEEEETTBCSS-------CSEEEECSSSCEEEEEEECCTTSCCEEEEEE---TTSEEEEECGGG--HHHHCEEEEECSC
T ss_pred EEEEEECCCCCC-------ceEEeecccccEEEEEEEcCCCCCeEEEEec---cCCeEEEEECCC--CCccccccccccc
Confidence 999999987632 12336788887764 46777 8999986 899999999986 456667777764
Q ss_pred -CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceE
Q 000054 2368 -GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGML 2446 (2548)
Q Consensus 2368 -~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~I 2446 (2548)
.|.+++|+|+ +..+++++.|++|++||+| ++.++..+
T Consensus 356 ~~v~~v~fsp~-------~~~l~s~~~d~tv~lwd~~---~~~~~~~l-------------------------------- 393 (524)
T 2j04_B 356 SNLVPVVYCPQ-------IYSYIYSDGASSLRAVPSR---AAFAVHPL-------------------------------- 393 (524)
T ss_dssp CSCCCEEEETT-------TTEEEEECSSSEEEEEETT---CTTCCEEE--------------------------------
T ss_pred CcccceEeCCC-------cCeEEEeCCCCcEEEEECc---ccccceee--------------------------------
Confidence 5889999998 6789999999999999955 45554444
Q ss_pred EEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc--------------EEEEeccccccc-------------
Q 000054 2447 WYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ--------------LVYHWSKLHERH------------- 2499 (2548)
Q Consensus 2447 wdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge--------------ll~tL~~~Hs~h------------- 2499 (2548)
.+|.+.|++|+|+|+|++|++|+.||+|++||+..+. .+..+.-...+.
T Consensus 394 ----~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~ 469 (524)
T 2j04_B 394 ----VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPL 469 (524)
T ss_dssp ----EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-
T ss_pred ----ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceeccc
Confidence 5677778888888877777888888888877764320 111110000000
Q ss_pred ---ccccCcccCCCCceeecEEEEEEcCCe-----EEEEECCCcEEEEECCCCc
Q 000054 2500 ---TFLQPSSRGFGGVVRAGVTDIQVVSRG-----FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2500 ---sfl~~tl~GH~~~V~a~VtsLafSPdG-----LaSGS~DGtIrIWDL~sg~ 2545 (2548)
......+.+|.+.| .+++|+|++ +++|+.||+||||++....
T Consensus 470 ~~~g~~~~~l~gh~~~V----~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 470 TVNDVSKAKIDAHGINI----TCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp ------------CCCSC----CCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred ccCCcceeeecCCCceE----EEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 00122356777544 566999994 8899999999999998653
No 75
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.91 E-value=2.9e-22 Score=239.59 Aligned_cols=236 Identities=18% Similarity=0.227 Sum_probs=186.5
Q ss_pred CCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000054 2270 ALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2270 H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
|.+.|++|+|+|+ +++|+||+.||+|++||+.+++.... .....+.+|...|.+ |+|+|+++++++ .|+.|
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~---~~~~~l~~h~~~V~~~~~s~dg~~l~s~~---~d~~i 110 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG---IPQRALRGHSHFVSDVVISSDGQFALSGS---WDGTL 110 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE---EEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSEE
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc---eeeEEEeCCCCCEEEEEECCCCCEEEEEc---ccccc
Confidence 6699999999997 68999999999999999987643221 123457889998875 899999999997 89999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
++|+... .........+...+..+.+.+. +..+++|+.||.+++||++. ....... . .. ......
T Consensus 111 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~l~s~s~d~~~~~~d~~~---~~~~~~~-~-~~-~~~~v~ 175 (340)
T 4aow_A 111 RLWDLTT--GTTTRRFVGHTKDVLSVAFSSD-------NRQIVSGSRDKTIKLWNTLG---VCKYTVQ-D-ES-HSEWVS 175 (340)
T ss_dssp EEEETTT--TEEEEEEECCSSCEEEEEECTT-------SSCEEEEETTSCEEEECTTS---CEEEEEC-S-SS-CSSCEE
T ss_pred eEEeecc--cceeeeecCCCCceeEEEEeec-------CccceeecCCCeEEEEEeCC---CceEEEE-e-cc-ccCccc
Confidence 9999975 4556667778889999998888 67999999999999999642 2222111 1 11 112234
Q ss_pred ccccCCCCCC----ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 000054 2427 AHADAQTGSG----SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSK 2494 (2548)
Q Consensus 2427 ~vafSpdGk~----v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~ 2494 (2548)
.+.+++++.. .++.++.+++|+. +.+|.+.|++++|+|++++|++|+.||.|++||+++++.+..+
T Consensus 176 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-- 253 (340)
T 4aow_A 176 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-- 253 (340)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE--
T ss_pred ceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee--
Confidence 4556666443 5667889999985 3579999999999999999999999999999999999988766
Q ss_pred cccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCCc
Q 000054 2495 LHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2495 ~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.++. .|..++|+|++ +++++.|+.|++||++++.
T Consensus 254 ------------~~~~-----~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 254 ------------DGGD-----IINALCFSPNRYWLCAATGPSIKIWDLEGKI 288 (340)
T ss_dssp ------------ECSS-----CEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred ------------cCCc-----eEEeeecCCCCceeeccCCCEEEEEECCCCe
Confidence 2332 35778999999 8899999999999998753
No 76
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.91 E-value=9.9e-23 Score=253.74 Aligned_cols=249 Identities=17% Similarity=0.216 Sum_probs=183.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccc----------eeccCCcccEE--EEcCCCCEEEEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESC----------LCFSSHAMDVS--YITSSGSVIAAA 2337 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~----------~t~~gH~~~V~--afSpdGslLATg 2337 (2548)
|.+.|.+++|+|+|++|++|+ |+++++|++.+++.......... .....+...|. +|+|+|++++++
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 568999999999999999976 78999999988764322110000 00011222354 489999999998
Q ss_pred eccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCC
Q 000054 2338 GHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSD 2417 (2548)
Q Consensus 2338 G~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~ 2417 (2548)
+ .|+.|++||+.. .+.+..+.+|...|++++|+|+ +..|++|+.||+|++||+ .++++...+..
T Consensus 142 ~---~d~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~p~-------~~~l~s~s~d~~v~iwd~---~~~~~~~~~~~- 205 (393)
T 1erj_A 142 A---EDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPS-------GDKLVSGSGDRTVRIWDL---RTGQCSLTLSI- 205 (393)
T ss_dssp E---TTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTT-------SSEEEEEETTSEEEEEET---TTTEEEEEEEC-
T ss_pred c---CCCeEEEEECCC--CcEEEEEccCCCCEEEEEEcCC-------CCEEEEecCCCcEEEEEC---CCCeeEEEEEc-
Confidence 6 899999999976 6678889999999999999998 789999999999999994 45666655421
Q ss_pred CCCCCccccccccCC-CCCC--ccCCCCCceEEEcc---------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q 000054 2418 RGGSSINTCAHADAQ-TGSG--SKPGDQNGMLWYIP---------------KAHLGSVTRISTVPNTSLFLTGSKDGDVK 2479 (2548)
Q Consensus 2418 ~~~s~~~~~~vafSp-dGk~--v~s~D~sv~Iwdi~---------------~gH~~~VtsLafSPdG~~LaSGS~DGtIr 2479 (2548)
......++++| +|++ +++.|+.+++|+.. .+|...|++++|+|+|++|++|+.||+|+
T Consensus 206 ----~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~ 281 (393)
T 1erj_A 206 ----EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281 (393)
T ss_dssp ----SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ----CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 11245567787 7776 67788999999852 46899999999999999999999999999
Q ss_pred EEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2480 LWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2480 IWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+||+++............+. ....+.+|.+. |.+++|+|++ |++|+.||+|++||+.++.
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~--~~~~~~~h~~~----v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGT--CEVTYIGHKDF----VLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343 (393)
T ss_dssp EEEC---------------C--EEEEEECCSSC----EEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred EEECCCCCCcccccCCCCCc--ceEEEecccCc----EEEEEECCCCCEEEEEeCCCeEEEEECCCCe
Confidence 99998754432211000000 01124678754 4677999999 8999999999999998764
No 77
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.1e-22 Score=280.58 Aligned_cols=157 Identities=9% Similarity=0.071 Sum_probs=126.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+| |++|++++.|++|+|||+.+++.+..+. |.+.|++++|+|+++++++|+.||+|++||++
T Consensus 61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-----------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~ 128 (902)
T 2oaj_A 61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-----------VPGKITSIDTDASLDWMLIGLQNGSMIVYDID 128 (902)
T ss_dssp EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-----------CSSCEEEEECCTTCSEEEEEETTSCEEEEETT
T ss_pred EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-----------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 68999999 8899999999999999999998887773 23789999999999999999999999999998
Q ss_pred CCcccccccC--ccc-eeccCCcccEEE--EcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc----------
Q 000054 2302 VGGRSNVRPM--ESC-LCFSSHAMDVSY--ITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH---------- 2365 (2548)
Q Consensus 2302 tgk~i~i~p~--~s~-~t~~gH~~~V~a--fSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH---------- 2365 (2548)
++........ ... ....+|...|.+ |+|+ +..+++++ .|+.| +||++. .+++..+..|
T Consensus 129 ~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~---~dg~v-lWd~~~--~~~~~~~~~~~~~g~~~~~~ 202 (902)
T 2oaj_A 129 RDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY---EYVTL-TYSLVE--NEIKQSFIYELPPFAPGGDF 202 (902)
T ss_dssp TTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC---SSCEE-EEETTT--TEEEEEECCCBCTTCCCSTT
T ss_pred CCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe---CCCcE-EEECCC--CceEEEEecccCCcCCCccc
Confidence 7753211000 000 224678777764 8886 46777774 89999 999986 5566666554
Q ss_pred --------CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCC
Q 000054 2366 --------EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2366 --------s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR 2403 (2548)
...|++++|+|+ +.+|++|+.||+|++||++
T Consensus 203 ~~~~~~~h~~~V~~v~fspd-------g~~lasgs~Dg~i~lWd~~ 241 (902)
T 2oaj_A 203 SEKTNEKRTPKVIQSLYHPN-------SLHIITIHEDNSLVFWDAN 241 (902)
T ss_dssp CCCTTSCBCCCEEEEEECTT-------SSEEEEEETTCCEEEEETT
T ss_pred ccccccccCCCeEEEEEcCC-------CCEEEEEECCCeEEEEECC
Confidence 578999999999 7899999999999999974
No 78
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.91 E-value=3.3e-22 Score=251.58 Aligned_cols=263 Identities=19% Similarity=0.324 Sum_probs=210.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+ +.++++|+.||+|++||+.+++.+..+.. |...|.++.|+ ++.+++|+.||+|++||++
T Consensus 162 v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----------h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~ 227 (445)
T 2ovr_B 162 VWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYG----------HTSTVRCMHLH--EKRVVSGSRDATLRVWDIE 227 (445)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEEE--TTEEEEEETTSEEEEEESS
T ss_pred EEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECC----------CCCcEEEEEec--CCEEEEEeCCCEEEEEECC
Confidence 5777776 67999999999999999999988877642 55899999995 6789999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
+++.. ..+.+|...|.++..+++.+++++ .||.|++||+++ .+.+..+.+|...|.++.| +
T Consensus 228 ~~~~~--------~~~~~~~~~v~~~~~~~~~l~~~~---~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~--~---- 288 (445)
T 2ovr_B 228 TGQCL--------HVLMGHVAAVRCVQYDGRRVVSGA---YDFMVKVWDPET--ETCLHTLQGHTNRVYSLQF--D---- 288 (445)
T ss_dssp SCCEE--------EEEECCSSCEEEEEECSSCEEEEE---TTSCEEEEEGGG--TEEEEEECCCSSCEEEEEE--C----
T ss_pred CCcEE--------EEEcCCcccEEEEEECCCEEEEEc---CCCEEEEEECCC--CcEeEEecCCCCceEEEEE--C----
Confidence 87543 336788888888666899999986 899999999986 6778889999999999999 3
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc--------c
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP--------K 2451 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~--------~ 2451 (2548)
+..+++|+.||.|++|| +.+++.+..+... .. ....+. .++.. +++.|+.+++|++. .
T Consensus 289 ---~~~l~~~~~d~~i~i~d---~~~~~~~~~~~~~---~~-~v~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 289 ---GIHVVSGSLDTSIRVWD---VETGNCIHTLTGH---QS-LTSGME--LKDNILVSGNADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp ---SSEEEEEETTSCEEEEE---TTTCCEEEEECCC---CS-CEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ---CCEEEEEeCCCeEEEEE---CCCCCEEEEEcCC---cc-cEEEEE--EeCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 55999999999999999 4567777665221 11 122223 34444 67788999999953 2
Q ss_pred ---CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--
Q 000054 2452 ---AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-- 2526 (2548)
Q Consensus 2452 ---gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-- 2526 (2548)
.|...|++++|+ +++|++|+.||.|++||+.+++.+..+...+ ..+|. ..|++++|+|+|
T Consensus 357 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---------~~~~~----~~v~~~~~s~~~~~ 421 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE---------SGGSG----GVVWRIRASNTKLV 421 (445)
T ss_dssp STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECT---------TGGGT----CEEEEEEECSSEEE
T ss_pred cCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccc---------cCCCC----ceEEEEEecCCEEE
Confidence 388899999995 6899999999999999999999988772111 12344 346788999999
Q ss_pred EEEEECCCc----EEEEECCCC
Q 000054 2527 FLSCGGDGS----VKLIQLEDY 2544 (2548)
Q Consensus 2527 LaSGS~DGt----IrIWDL~sg 2544 (2548)
+++|+.||+ |.+||++..
T Consensus 422 la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 422 CAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEECSSSSSCCEEEEEECCCC
T ss_pred EEEcccCCCCccEEEEEECCCC
Confidence 789999998 999999865
No 79
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.7e-23 Score=279.90 Aligned_cols=255 Identities=21% Similarity=0.209 Sum_probs=197.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCC--ceeEEEeccCCCCCCCCCCCCCeEEEEEccC--CCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD--KATATYGVLPAANVPPPYALASISALQFDHY--GHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg--~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd--G~~LaSGS~DGtVrV 2297 (2548)
|.+++|+|+|+++++|+.||.|+|||+.++ +....+. +|.+.|++++|+++ +++|++|+.||+|++
T Consensus 12 V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~----------~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT----------GHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp EEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC----------CCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc----------CCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 799999999999999999999999999843 4444442 35689999999987 999999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccEEE--EcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
||+.+++.. ....+.+|...|.+ |+|+ ++.+++++ .||.|++||++.........+.+|...|.++.
T Consensus 82 wd~~~~~~~------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs---~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~ 152 (753)
T 3jro_A 82 WKEENGRWS------QIAVHAVHSASVNSVQWAPHEYGPLLLVAS---SDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (753)
T ss_dssp EEEETTEEE------EEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTSEEEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred EECCCCccc------ccccccCCCCCeEEEEECCCCCCCEEEEEe---CCCcEEEEEeecCCCcceeEeecCCCceEEEE
Confidence 999876421 12346778888875 8898 99999997 89999999998754455677789999999999
Q ss_pred EccCCCCC------CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000054 2374 VFDNDLGS------GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2374 fsP~dlg~------gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
|+|..... .+.+..+++|+.||.|++||++. +.... .+.
T Consensus 153 ~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~---~~~~~--------------------------------~~~ 197 (753)
T 3jro_A 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS---DAQTY--------------------------------VLE 197 (753)
T ss_dssp ECCCC---------CGGGCCEEEEETTSCEEEEEEET---TTTEE--------------------------------EEE
T ss_pred ecCcccccccccccCCCCCEEEEEECCCeEEEEeccC---Ccccc--------------------------------eee
Confidence 99941000 00167999999999999999652 21110 111
Q ss_pred EcccCCCCCEEEEEEeCC---CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcC
Q 000054 2448 YIPKAHLGSVTRISTVPN---TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2448 di~~gH~~~VtsLafSPd---G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
..+.+|.+.|++++|+|+ +.+|++|+.||.|++||+.+++...... .....+|.+. |++++|+|
T Consensus 198 ~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~---------~~~~~~~~~~----v~~l~~sp 264 (753)
T 3jro_A 198 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT---------LLKEEKFPDV----LWRASWSL 264 (753)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCC---------BSSSSCCSSC----CCCEEECT
T ss_pred eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeE---------EeccCCCCCc----eEEEEEcC
Confidence 223789999999999999 9999999999999999998864221110 0112445543 46679999
Q ss_pred Ce--EEEEECCCcEEEEECCC
Q 000054 2525 RG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2525 dG--LaSGS~DGtIrIWDL~s 2543 (2548)
+| +++|+.||.|++|++.+
T Consensus 265 dg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 265 SGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp TTCCEEEECSSSCEECCBCCS
T ss_pred CCCEEEEEcCCCEEEEEecCC
Confidence 99 99999999999999985
No 80
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.90 E-value=2.5e-23 Score=254.17 Aligned_cols=197 Identities=10% Similarity=0.057 Sum_probs=150.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc---eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK---ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~---~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
+.+++|+|++++|++|+.||+|++||+.+++ ....+ ..|...|++++|+|++++|++|+.||+|++|
T Consensus 58 v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 127 (377)
T 3dwl_C 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL----------LRLNRAATFVRWSPNEDKFAVGSGARVISVC 127 (377)
T ss_dssp EEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC----------CCCSSCEEEEECCTTSSCCEEEESSSCEEEC
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe----------cccCCceEEEEECCCCCEEEEEecCCeEEEE
Confidence 6999999999999999999999999999876 22222 2356899999999999999999999999999
Q ss_pred EcCCCcccccccCccceeccC-CcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCC----------------CCcc
Q 000054 2299 QLEVGGRSNVRPMESCLCFSS-HAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPP----------------TSSR 2359 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~g-H~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~----------------~k~v 2359 (2548)
|+++++... ....+.+ |...|.+ |+|+++++++++ .|+.|++||++... .+++
T Consensus 128 d~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (377)
T 3dwl_C 128 YFEQENDWW-----VSKHLKRPLRSTILSLDWHPNNVLLAAGC---ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC 199 (377)
T ss_dssp CC-----CC-----CCEEECSSCCSCEEEEEECTTSSEEEEEE---SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE
T ss_pred EECCcccce-----eeeEeecccCCCeEEEEEcCCCCEEEEEe---CCCEEEEEEEEecccCCCccccccccccchhhhh
Confidence 998765211 1233555 8888874 899999999986 89999999985311 2344
Q ss_pred eeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCce----eeeecCCCCCCCccccccccCCCCC
Q 000054 2360 ASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKT----KKHKHSDRGGSSINTCAHADAQTGS 2435 (2548)
Q Consensus 2360 ~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~----l~tl~~~~~~s~~~~~~vafSpdGk 2435 (2548)
..+ +|.+.|++++|+|+ +++|++|+.||.|++||++ +++. +..+
T Consensus 200 ~~~-~~~~~v~~~~~sp~-------~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~--------------------- 247 (377)
T 3dwl_C 200 AEY-PSGGWVHAVGFSPS-------GNALAYAGHDSSVTIAYPS---APEQPPRALITV--------------------- 247 (377)
T ss_dssp ECC-CCSSSEEEEEECTT-------SSCEEEEETTTEEC-CEEC---STTSCEEECCCE---------------------
T ss_pred hcc-cCCceEEEEEECCC-------CCEEEEEeCCCcEEEEECC---CCCCcceeeEee---------------------
Confidence 555 89999999999998 7899999999999999953 4443 2222
Q ss_pred CccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000054 2436 GSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2436 ~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.+|...|.+++|+|++++|++|+.|+.+ +|+..
T Consensus 248 ---------------~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 248 ---------------KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ---------------ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred ---------------cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 6799999999999999999999877666 66655
No 81
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.90 E-value=1.5e-21 Score=238.46 Aligned_cols=268 Identities=13% Similarity=0.136 Sum_probs=177.9
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC---CCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY---GHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd---G~~LaSGS~DGtVrV 2297 (2548)
+.+++|+| ++.++++|+.||.|++||+.+++....+. +...+.++.|++. +.++++|+.||.|++
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-----------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-----------CSSCEEEEEECSSCSSCCEEEEEESSSSEEE
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-----------CCCceeeeEeecCCCCCcEEEEEcCCCeEEE
Confidence 68999999 77899999999999999999998887764 2377999999984 559999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccEEE--EcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceee------------
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASI------------ 2362 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl------------ 2362 (2548)
||+++++.. ..+.+|...|.+ ++|++. ++++++ .||.|++||++.. ..++..+
T Consensus 171 ~d~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~ll~~~~---~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~ 238 (408)
T 4a11_B 171 CDLKSGSCS--------HILQGHRQEILAVSWSPRYDYILATAS---ADSRVKLWDVRRA-SGCLITLDQHNGKKSQAVE 238 (408)
T ss_dssp EESSSSCCC--------EEECCCCSCEEEEEECSSCTTEEEEEE---TTSCEEEEETTCS-SCCSEECCTTTTCSCCCTT
T ss_pred EeCCCccee--------eeecCCCCcEEEEEECCCCCcEEEEEc---CCCcEEEEECCCC-Ccccccccccccccceeec
Confidence 999877532 336678888874 899988 577876 8999999999763 2233333
Q ss_pred ---eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCC--ccccccccCCCCCC-
Q 000054 2363 ---TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS--INTCAHADAQTGSG- 2436 (2548)
Q Consensus 2363 ---~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~--~~~~~vafSpdGk~- 2436 (2548)
.+|.+.|.+++|+|+ +.+|++|+.||.|++||++ +++............. ...........+..
T Consensus 239 ~~~~~~~~~v~~~~~~~~-------~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (408)
T 4a11_B 239 SANTAHNGKVNGLCFTSD-------GLHLLTVGTDNRMRLWNSS---NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFV 308 (408)
T ss_dssp TSSCSCSSCEEEEEECTT-------SSEEEEEETTSCEEEEETT---TCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEE
T ss_pred cccccccCceeEEEEcCC-------CCEEEEecCCCeEEEEECC---CCccceeccccccccccccceeEEecCCCceEE
Confidence 578999999999998 7899999999999999954 4444332211111111 11111112222333
Q ss_pred ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccC
Q 000054 2437 SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRG 2508 (2548)
Q Consensus 2437 v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~G 2508 (2548)
.+..++.+++|++ +.+|.+.|++++|+|++++|++|+.||.|++||+++++.+.... .
T Consensus 309 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--------------~ 374 (408)
T 4a11_B 309 FVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD--------------E 374 (408)
T ss_dssp EEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------
T ss_pred EEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC--------------c
Confidence 5667788999985 35799999999999999999999999999999999998876442 1
Q ss_pred CCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCC
Q 000054 2509 FGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2509 H~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~s 2543 (2548)
+.. ...+.+.. ..+++.|+.+++|+.+.
T Consensus 375 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 375 TTT-------KSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp --------------------------------------
T ss_pred eEe-------ccccccccceeecccCccCceeecCCcc
Confidence 100 01222222 56788999999998753
No 82
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.90 E-value=4.1e-23 Score=256.40 Aligned_cols=282 Identities=15% Similarity=0.174 Sum_probs=211.0
Q ss_pred EEEEEcCCCCEEE-EEECCCeEEEEEcCCCcee-EEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 000054 2223 RAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2223 ~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l-~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWD 2299 (2548)
..++++|+...++ +|+.||.|+||++.+.... ..+. ...+|.+.|++++|+| ++++|++|+.||+|++||
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~-------~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVP-------LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCC-------CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCc-------eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 3467778765444 5799999999999754322 1221 1234679999999999 999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceee--eccCCCeEEEEE
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASI--TCHEGGARSISV 2374 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl--~gHs~~VtSLaf 2374 (2548)
+.+++... ........+.+|...|.+ |+|++ +++++++ .|+.|++||++. ++.+..+ .+|.+.|++++|
T Consensus 111 ~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~ 184 (402)
T 2aq5_A 111 IPDGGLVL-PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG---CDNVILVWDVGT--GAAVLTLGPDVHPDTIYSVDW 184 (402)
T ss_dssp CCTTCCSS-CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE---TTSCEEEEETTT--TEEEEEECTTTCCSCEEEEEE
T ss_pred ccCCCCcc-ccCCceEEecCCCCeEEEEEECcCCCCEEEEEc---CCCEEEEEECCC--CCccEEEecCCCCCceEEEEE
Confidence 98774321 111234557789988875 89998 6899986 899999999986 5677788 789999999999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc--c---CCCCCceEEEc
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS--K---PGDQNGMLWYI 2449 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v--~---s~D~sv~Iwdi 2449 (2548)
+|+ +.+|++|+.||.|++||++ +++.+..+. ..+.......+.+++++.++ + ..++.+++|++
T Consensus 185 ~~~-------~~~l~~~~~d~~i~iwd~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~ 252 (402)
T 2aq5_A 185 SRD-------GALICTSCRDKRVRVIEPR---KGTVVAEKD--RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT 252 (402)
T ss_dssp CTT-------SSCEEEEETTSEEEEEETT---TTEEEEEEE--CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred CCC-------CCEEEEEecCCcEEEEeCC---CCceeeeec--cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence 998 7899999999999999954 566665541 11222234567889999883 3 46888999996
Q ss_pred cc----------CCCCCEEEEEEeCCCCEEEE-EeCCCcEEEEECCCCcE-EEEecccccccccccCcccCCCCceeecE
Q 000054 2450 PK----------AHLGSVTRISTVPNTSLFLT-GSKDGDVKLWDAKAAQL-VYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2450 ~~----------gH~~~VtsLafSPdG~~LaS-GS~DGtIrIWDl~Tgel-l~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
.. .|...|.+++|+|++++|++ |+.||.|++||+.+++. +..+. . +. |. ..|
T Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~-~----------~~-~~----~~v 316 (402)
T 2aq5_A 253 KHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS-M----------FS-SK----ESQ 316 (402)
T ss_dssp TBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE-E----------EC-CS----SCC
T ss_pred ccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec-c----------cc-cC----Ccc
Confidence 33 46778999999999999965 55799999999998874 44441 0 11 22 235
Q ss_pred EEEEEcCCeEEEEECCCcEEEEECCCCc
Q 000054 2518 TDIQVVSRGFLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2518 tsLafSPdGLaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+++|+|++...++.|+.+++|++.++.
T Consensus 317 ~~~~~sp~~~~~~s~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 317 RGMGYMPKRGLEVNKCEIARFYKLHERK 344 (402)
T ss_dssp SEEEECCGGGSCGGGTEEEEEEEEETTE
T ss_pred cceEEecccccceecceeEEEEEcCCCc
Confidence 6779999992223467899999998764
No 83
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.90 E-value=3.2e-22 Score=282.65 Aligned_cols=271 Identities=15% Similarity=0.184 Sum_probs=222.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrVWD 2299 (2548)
+.+++|+|+|+++++|+.||+|++||+.+++.+..+.. |.+.|.+++|+| ++..+++|+.||.|++||
T Consensus 660 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd 729 (1249)
T 3sfz_A 660 VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE----------HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC----------CSSCEEEEEECSSSSCCEEEEEETTSCEEEEE
T ss_pred EEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcC----------CCCcEEEEEEecCCCceEEEEEeCCCeEEEEE
Confidence 68999999999999999999999999999998888753 558999999999 566899999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCC---------------------
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPT--------------------- 2356 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~--------------------- 2356 (2548)
+++++.. ..+.+|...|.+ |+|+++++++++ .||.|++||+.....
T Consensus 730 ~~~~~~~--------~~~~~h~~~v~~~~~sp~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1249)
T 3sfz_A 730 LNQKECR--------NTMFGHTNSVNHCRFSPDDELLASCS---ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE 798 (1249)
T ss_dssp TTSSSEE--------EEECCCSSCEEEEEECSSTTEEEEEE---SSSEEEEEEGGGTEEEEEEECCCCC--------CCC
T ss_pred CCCcchh--------heecCCCCCEEEEEEecCCCEEEEEE---CCCeEEEEeCCCCcccceecccccccccCCcccccc
Confidence 9987543 346788888874 899999999986 899999999864210
Q ss_pred -------------------------------Ccceee-eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc
Q 000054 2357 -------------------------------SSRASI-TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY 2404 (2548)
Q Consensus 2357 -------------------------------k~v~sl-~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~ 2404 (2548)
.....+ .+|.+.|.+++|+|+ +.++++|+.||.|++||
T Consensus 799 ~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~-------~~~l~~~~~dg~v~vwd--- 868 (1249)
T 3sfz_A 799 VIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY-------DHLAVIALSQYCVELWN--- 868 (1249)
T ss_dssp CCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSS-------TTEEEEECSSSCEEEEE---
T ss_pred ceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCC-------CCEEEEEeCCCeEEEEE---
Confidence 001111 267889999999998 78999999999999999
Q ss_pred cccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEccc-------------------------------
Q 000054 2405 IATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIPK------------------------------- 2451 (2548)
Q Consensus 2405 l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~~------------------------------- 2451 (2548)
..++..+..+.. .......+.++|+|.. +++.|+.+++|+...
T Consensus 869 ~~~~~~~~~~~~----h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1249)
T 3sfz_A 869 IDSRLKVADCRG----HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIR 944 (1249)
T ss_dssp TTTTEEEEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSS
T ss_pred cCCCceeeecCC----CccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCc
Confidence 556777666521 2234567889999987 677889999998431
Q ss_pred --------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2452 --------------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2452 --------------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
.+...+.+++|+|+++++++|+.||.|++||+.+++.+..+ .+|.+.|
T Consensus 945 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~--------------~~h~~~v---- 1006 (1249)
T 3sfz_A 945 GLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG--------------VGHKKAV---- 1006 (1249)
T ss_dssp SEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC--------------CCCSSCC----
T ss_pred ceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec--------------ccCCCce----
Confidence 13457999999999999999999999999999999887655 5777554
Q ss_pred EEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2518 TDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2518 tsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+++|+|+| +++++.||+|++||+.++.
T Consensus 1007 ~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp CCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 556999999 9999999999999998864
No 84
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.90 E-value=1.9e-21 Score=251.64 Aligned_cols=270 Identities=10% Similarity=0.087 Sum_probs=207.7
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCC---CeEEEEEccC-CCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALA---SISALQFDHY-GHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~---~VtsVaFSPd-G~~LaSGS~DGtVr 2296 (2548)
+.+++|+|+++ ++++|+.||.|++||..+++.+..+.. |.+ .|++++|+|+ ++++++++.||.|+
T Consensus 163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT----------HHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 232 (615)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS----------SSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc----------cCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence 78999999998 899999999999999999988877643 346 8999999999 99999999999999
Q ss_pred EEEcCCCcccccccCccceec-c---CCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc----C
Q 000054 2297 TWQLEVGGRSNVRPMESCLCF-S---SHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH----E 2366 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~-~---gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH----s 2366 (2548)
+||+++++... .+ . +|...|.+ ++ +++++++++ .|+.|++||++. .+.+..+..+ .
T Consensus 233 vwd~~~~~~~~--------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~---~d~~i~~wd~~~--~~~~~~~~~~~~~~~ 298 (615)
T 1pgu_A 233 CFDGKSGEFLK--------YIEDDQEPVQGGIFALSWL-DSQKFATVG---ADATIRVWDVTT--SKCVQKWTLDKQQLG 298 (615)
T ss_dssp EEETTTCCEEE--------ECCBTTBCCCSCEEEEEES-SSSEEEEEE---TTSEEEEEETTT--TEEEEEEECCTTCGG
T ss_pred EEECCCCCEeE--------EecccccccCCceEEEEEc-CCCEEEEEc---CCCcEEEEECCC--CcEEEEEcCCCCccc
Confidence 99998876432 23 3 77777764 78 999999987 899999999986 5667777766 4
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCC---------------------------
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRG--------------------------- 2419 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~--------------------------- 2419 (2548)
..+.++.+. + +..+++|+.||.|++||++ +++.+..+.....
T Consensus 299 ~~~~~~~~~-~-------~~~l~~~~~~g~i~~~d~~---~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~ 367 (615)
T 1pgu_A 299 NQQVGVVAT-G-------NGRIISLSLDGTLNFYELG---HDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSM 367 (615)
T ss_dssp GCEEEEEEE-E-------TTEEEEEETTSCEEEEETT---EEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEE
T ss_pred CceeEEEeC-C-------CCeEEEEECCCCEEEEECC---CCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhh
Confidence 678888875 3 5699999999999999964 3333333211000
Q ss_pred --CCCcccccc----------------------------------ccCCC------------------------------
Q 000054 2420 --GSSINTCAH----------------------------------ADAQT------------------------------ 2433 (2548)
Q Consensus 2420 --~s~~~~~~v----------------------------------afSpd------------------------------ 2433 (2548)
........+ +++++
T Consensus 368 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (615)
T 1pgu_A 368 HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS 447 (615)
T ss_dssp ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred cCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCC
Confidence 000000011 11111
Q ss_pred --------CCC--ccCC-CCCceEEEcc---------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2434 --------GSG--SKPG-DQNGMLWYIP---------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2434 --------Gk~--v~s~-D~sv~Iwdi~---------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
+.. ++.. ++.+++|++. .+|...|++++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 448 ~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~- 526 (615)
T 1pgu_A 448 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR- 526 (615)
T ss_dssp CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC-
T ss_pred CceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEe-
Confidence 111 2233 7778888742 468899999999999999999999999999999999998765
Q ss_pred ccccccccccCcccC-CCCceeecEEEEEEcC----------Ce--EEEEECCCcEEEEECCCC
Q 000054 2494 KLHERHTFLQPSSRG-FGGVVRAGVTDIQVVS----------RG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2494 ~~Hs~hsfl~~tl~G-H~~~V~a~VtsLafSP----------dG--LaSGS~DGtIrIWDL~sg 2544 (2548)
.+ |.. .|++++|+| ++ |++|+.||+|++||++++
T Consensus 527 -------------~~~h~~----~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 527 -------------WAFRTS----KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp -------------SCCCSS----CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred -------------ecCCCC----ceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 44 654 457789999 88 899999999999999886
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.90 E-value=5.6e-22 Score=237.42 Aligned_cols=207 Identities=21% Similarity=0.282 Sum_probs=165.5
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcC--CCCEEEEEeccCCCC
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS--SGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp--dGslLATgG~SS~DG 2344 (2548)
+|.+.|++++|+|+|++|++|+.||+|++||+..+.. .....+.+|...|.+ |++ ++++|++++ .|+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s---~D~ 77 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH------KLIDTLTGHEGPVWRVDWAHPKFGTILASCS---YDG 77 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB------CCCEEECCCSSCEEEEEECCGGGCSEEEEEE---TTT
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc------EEEEEEccccCCeEEEEecCCCcCCEEEEEc---CCC
Confidence 4679999999999999999999999999999975421 123457899999975 665 389999986 899
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000054 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
+|++||++.+....+..+.+|...|.+++|+|+. .+.+|++|+.||+|++||++. +.....
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~-----~g~~l~s~s~d~~v~~wd~~~---~~~~~~----------- 138 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-----YGPMLLVASSDGKVSVVEFKE---NGTTSP----------- 138 (297)
T ss_dssp EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGG-----GCSEEEEEETTSEEEEEEBCS---SSCBCC-----------
T ss_pred EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCC-----CCcEEEEEECCCcEEEEEecC---CCceee-----------
Confidence 9999999864334667788899999999999962 156999999999999999652 211000
Q ss_pred ccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC-------------CCEEEEEeCCCcEEEEECCCCc----
Q 000054 2425 TCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN-------------TSLFLTGSKDGDVKLWDAKAAQ---- 2487 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd-------------G~~LaSGS~DGtIrIWDl~Tge---- 2487 (2548)
..+.+|...|.+++|+|+ +++|++|+.||+|++||+++++
T Consensus 139 -----------------------~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~ 195 (297)
T 2pm7_B 139 -----------------------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195 (297)
T ss_dssp -----------------------EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEE
T ss_pred -----------------------eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE
Confidence 012679999999999997 5799999999999999998765
Q ss_pred EEEEecccccccccccCcccCCCCceeecEEEEEEcCC---e--EEEEECCCcEEEEECCCC
Q 000054 2488 LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR---G--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2488 ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd---G--LaSGS~DGtIrIWDL~sg 2544 (2548)
+..+ +.+|.+. |.+++|+|+ + |++|+.||+|++||++++
T Consensus 196 ~~~~--------------l~~H~~~----V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 196 LEST--------------LEGHSDW----VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp EEEE--------------ECCCSSC----EEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EEEE--------------ecCCCCc----eEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 3333 3788754 567799998 3 899999999999999764
No 86
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.89 E-value=9.4e-22 Score=247.94 Aligned_cols=237 Identities=9% Similarity=0.041 Sum_probs=170.6
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
|.+++|+| ++.+|++|+.||+|++||+.++... .+... ..+...+.+++|+|++++|++|+.||+|++||+
T Consensus 167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~ 238 (435)
T 4e54_B 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR-VFASS-------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNM 238 (435)
T ss_dssp CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE-EEECC-------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEES
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee-EEecc-------CCCCccEEEEEECCCCCEEEEEeCCCcEeeecc
Confidence 48899998 6889999999999999999876443 33221 123467889999999999999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCCCC-EEEEEeccCCCCeEEEEECCCCCCC-cceeeeccCCCeEEEEEcc
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGS-VIAAAGHSSNGINVVVWDTLAPPTS-SRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k-~v~sl~gHs~~VtSLafsP 2376 (2548)
+... ...+.+|...|.+ |+|++. ++++++ .|+.|++||++..... ......+|...|++++|+|
T Consensus 239 ~~~~---------~~~~~~h~~~v~~v~~~p~~~~~~~s~s---~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp 306 (435)
T 4e54_B 239 DGKE---------LWNLRMHKKKVTHVALNPCCDWFLATAS---VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP 306 (435)
T ss_dssp SSCB---------CCCSBCCSSCEEEEEECTTCSSEEEEEE---TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT
T ss_pred Ccce---------eEEEecccceEEeeeecCCCceEEEEec---CcceeeEEecccccccceEEEeeeccccccceeECC
Confidence 7432 1236788888875 888876 677775 8999999999863222 2344468999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC--CC-----------ccccccccCCCCCC---ccCC
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG--SS-----------INTCAHADAQTGSG---SKPG 2440 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~--s~-----------~~~~~vafSpdGk~---v~s~ 2440 (2548)
+ +.+|++|+.||.|++||++ ++++...+...... .. .....+.+++++.. .+..
T Consensus 307 d-------g~~l~s~~~D~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 376 (435)
T 4e54_B 307 D-------GARLLTTDQKSEIRVYSAS---QWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYE 376 (435)
T ss_dssp T-------SSEEEEEESSSCEEEEESS---SSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTC
T ss_pred C-------CCeeEEEcCCCEEEEEECC---CCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecC
Confidence 8 7899999999999999954 45554443111110 00 01112334555554 2233
Q ss_pred CCCceEEEc---------ccCCCCCEEEE-EEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000054 2441 DQNGMLWYI---------PKAHLGSVTRI-STVPNTSLFLTGSKDGDVKLWDAKAAQLV 2489 (2548)
Q Consensus 2441 D~sv~Iwdi---------~~gH~~~VtsL-afSPdG~~LaSGS~DGtIrIWDl~Tgell 2489 (2548)
++.+++|+. ..+|...|.++ +|+|+|++|++|+ |++|+|||+++++..
T Consensus 377 ~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 377 LRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred CCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 456889974 23688888887 6999999999886 889999999988754
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.89 E-value=8.4e-22 Score=237.10 Aligned_cols=231 Identities=13% Similarity=0.101 Sum_probs=180.6
Q ss_pred EEEEEEcCC----CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHPL----RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPd----G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVr 2296 (2548)
+.+++|+|+ +++|++|+.||.|++||+.+++.+..+.. |.+.|++++|+| ++++|++|+.||.|+
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~l~s~~~dg~i~ 141 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG----------HGNAINELKFHPRDPNLLLSVSKDHALR 141 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES----------CCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC----------CCCcEEEEEECCCCCCEEEEEeCCCeEE
Confidence 588889898 67999999999999999999988877743 558999999999 899999999999999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-----------
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT----------- 2363 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~----------- 2363 (2548)
+||+++++.... ...+.+|...|.+ |+|+++++++++ .||.|++||++. .+....+.
T Consensus 142 iwd~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~ 211 (366)
T 3k26_A 142 LWNIQTDTLVAI-----FGGVEGHRDEVLSADYDLLGEKIMSCG---MDHSLKLWRINS--KRMMNAIKESYDYNPNKTN 211 (366)
T ss_dssp EEETTTTEEEEE-----ECSTTSCSSCEEEEEECTTSSEEEEEE---TTSCEEEEESCS--HHHHHHHHHHHTCCGGGCS
T ss_pred EEEeecCeEEEE-----ecccccccCceeEEEECCCCCEEEEec---CCCCEEEEECCC--CccccccceeEEecCCCCc
Confidence 999998754321 1113678888874 889999999997 899999999975 33332222
Q ss_pred -----------------ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCcccc-----------Cceeeeec
Q 000054 2364 -----------------CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIAT-----------GKTKKHKH 2415 (2548)
Q Consensus 2364 -----------------gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~T-----------Gk~l~tl~ 2415 (2548)
+|.+.|.+++|+++ ++++++.||.|++||++.... ...+..+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (366)
T 3k26_A 212 RPFISQKIHFPDFSTRDIHRNYVDCVRWLGD---------LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD 282 (366)
T ss_dssp SCCCCEEECCCSEEECSSCSSCCCEEEEETT---------EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE
T ss_pred ccccceeeccCccccccCCcceEEEEEEcCC---------EEEEEecCCEEEEEeCCCccccccccccCCcchheecccc
Confidence 39999999999833 999999999999999653211 01122221
Q ss_pred CCCCCCCccccccccCCC--CCC--ccCCCCCceEEEcc------------cCC--CCCEEEEEEeCCCCEEEEEeCCCc
Q 000054 2416 SDRGGSSINTCAHADAQT--GSG--SKPGDQNGMLWYIP------------KAH--LGSVTRISTVPNTSLFLTGSKDGD 2477 (2548)
Q Consensus 2416 ~~~~~s~~~~~~vafSpd--Gk~--v~s~D~sv~Iwdi~------------~gH--~~~VtsLafSPdG~~LaSGS~DGt 2477 (2548)
. .......+.++++ |++ +++.++.+++|++. .+| ...|++++|+|++++|++|+.||.
T Consensus 283 ~----~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 358 (366)
T 3k26_A 283 Y----SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS 358 (366)
T ss_dssp C----SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred c----cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCE
Confidence 1 1123456778888 887 56778899999853 345 689999999999999999999999
Q ss_pred EEEEECCC
Q 000054 2478 VKLWDAKA 2485 (2548)
Q Consensus 2478 IrIWDl~T 2485 (2548)
|++||+.+
T Consensus 359 i~iwd~~~ 366 (366)
T 3k26_A 359 IWRWDRLR 366 (366)
T ss_dssp EEEEEC--
T ss_pred EEEEEecC
Confidence 99999853
No 88
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.89 E-value=1.2e-20 Score=231.88 Aligned_cols=232 Identities=10% Similarity=0.079 Sum_probs=179.2
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+.+++|+| ++.+|++|+.||.|++||+.+ .....+.... .|...|.+++|+|++++|++|+.||.|++||+
T Consensus 121 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 192 (383)
T 3ei3_B 121 ITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTD-------SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL 192 (383)
T ss_dssp EEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCC-------CSSCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred eeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccC-------CCCCCeEEEEECCCCCEEEEECCCCCEEEEEC
Confidence 58899999 789999999999999999985 4455554322 24588999999999999999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCCCC-EEEEEeccCCCCeEEEEECCCCC--CCcceeeeccCCCeEEEEEc
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGS-VIAAAGHSSNGINVVVWDTLAPP--TSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGs-lLATgG~SS~DGtVrIWDl~t~~--~k~v~sl~gHs~~VtSLafs 2375 (2548)
+ ++. ...+.+|...|.+ |+|+++ ++++++ .|+.|++||++... ...+..+ +|.+.|++++|+
T Consensus 193 ~-~~~--------~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s 259 (383)
T 3ei3_B 193 D-GHE--------IFKEKLHKAKVTHAEFNPRCDWLMATSS---VDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN 259 (383)
T ss_dssp T-SCE--------EEEEECSSSCEEEEEECSSCTTEEEEEE---TTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC
T ss_pred C-CCE--------EEEeccCCCcEEEEEECCCCCCEEEEEe---CCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc
Confidence 4 322 2346778888874 899998 888886 89999999998632 2344444 799999999999
Q ss_pred c-CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC----CCC---------CccccccccCCCCCCccCCC
Q 000054 2376 D-NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR----GGS---------SINTCAHADAQTGSGSKPGD 2441 (2548)
Q Consensus 2376 P-~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~----~~s---------~~~~~~vafSpdGk~v~s~D 2441 (2548)
| + +.+|++++.||.|++||++ +++....+.... .+. ......++++++|++.++.+
T Consensus 260 ~~~-------~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d 329 (383)
T 3ei3_B 260 PTD-------STKLLTTDQRNEIRVYSSY---DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDK 329 (383)
T ss_dssp TTT-------SCEEEEEESSSEEEEEETT---BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCC
T ss_pred CCC-------CCEEEEEcCCCcEEEEECC---CCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCC
Confidence 9 6 7899999999999999965 343333321110 000 01122367788888877788
Q ss_pred CCceEEEcc--------cC--CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000054 2442 QNGMLWYIP--------KA--HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2442 ~sv~Iwdi~--------~g--H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
+.+++|++. .+ |.+.+.+++|+|++++|++|+ ||.|++||+++
T Consensus 330 ~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 330 RTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999999953 23 567788889999999999997 99999999874
No 89
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.2e-20 Score=226.71 Aligned_cols=241 Identities=14% Similarity=0.242 Sum_probs=193.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-----CcEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-----GTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-----GtVr 2296 (2548)
+.+++|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|+++++++++.+ |.|+
T Consensus 77 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~ 145 (369)
T 3zwl_B 77 IWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-----------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145 (369)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-----------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-----------cCCCeEEEEEccCCCEEEEecCCccCCCCEEE
Confidence 5889999999999999999999999999999888874 23789999999999999999999 9999
Q ss_pred EEEcCCCcccccc---cCccceeccCCcc--cEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000054 2297 TWQLEVGGRSNVR---PMESCLCFSSHAM--DVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2297 VWDl~tgk~i~i~---p~~s~~t~~gH~~--~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
+||+..+...... .......+..|.. .+. +++|+++.+++++ .||.|++||++.. ...+..+..|...|
T Consensus 146 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~-~~~~~~~~~~~~~v 221 (369)
T 3zwl_B 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH---KDGKISKYDVSNN-YEYVDSIDLHEKSI 221 (369)
T ss_dssp EEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE---TTSEEEEEETTTT-TEEEEEEECCSSCE
T ss_pred EEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc---CCCEEEEEECCCC-cEeEEEEecCCCce
Confidence 9999876432111 1112223344443 554 4899999999986 8999999999752 46778888999999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCC-----
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQ----- 2442 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~----- 2442 (2548)
.+++|+|+ +.+|++++.||.|++|| +.+++.+..+. .......+.++|+++. ++..++
T Consensus 222 ~~~~~~~~-------~~~l~~~~~d~~i~v~d---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (369)
T 3zwl_B 222 SDMQFSPD-------LTYFITSSRDTNSFLVD---VSTLQVLKKYE-----TDCPLNTAVITPLKEFIILGGGQEAKDVT 286 (369)
T ss_dssp EEEEECTT-------SSEEEEEETTSEEEEEE---TTTCCEEEEEE-----CSSCEEEEEECSSSSEEEEEECCC-----
T ss_pred eEEEECCC-------CCEEEEecCCceEEEEE---CCCCceeeeec-----CCCCceeEEecCCCceEEEeecCCCceEE
Confidence 99999998 78999999999999999 45667766653 2233456788999887 344444
Q ss_pred ---------CceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2443 ---------NGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2443 ---------sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.+++|+. +.+|.+.|++++|+|++++|++|+.||.|++||++++.....+
T Consensus 287 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 287 TTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp --------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred EEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 5788874 3579999999999999999999999999999999876654433
No 90
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.89 E-value=1.3e-21 Score=243.68 Aligned_cols=216 Identities=13% Similarity=0.149 Sum_probs=160.0
Q ss_pred EEEEEEcCCC--CEEEEEECCCeEEEEEcCCCceeEEEeccCCCC------------------------------CCCCC
Q 000054 2222 TRAFSSHPLR--PFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN------------------------------VPPPY 2269 (2548)
Q Consensus 2222 V~~VsfSPdG--~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs------------------------------~~~~~ 2269 (2548)
|.+++|+|++ .+|++|+.||+|++||+.++...........+. .-..+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 5889999998 899999999999999988654321100000000 00235
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-ccccccCccceeccCCcccEEE--EcCCC-CEEEEEeccCCCCe
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGG-RSNVRPMESCLCFSSHAMDVSY--ITSSG-SVIAAAGHSSNGIN 2345 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk-~i~i~p~~s~~t~~gH~~~V~a--fSpdG-slLATgG~SS~DGt 2345 (2548)
|...|++++|+|++++|++| .||+|++||++++. ....... ....+.+|...|.+ |+|++ +++++++ .||.
T Consensus 176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~dg~ 250 (447)
T 3dw8_B 176 HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDI-KPANMEELTEVITAAEFHPNSCNTFVYSS---SKGT 250 (447)
T ss_dssp CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEEC-CCSSGGGCCCCEEEEEECSSCTTEEEEEE---TTSC
T ss_pred CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeec-ccccccccCcceEEEEECCCCCcEEEEEe---CCCe
Confidence 77999999999999999999 79999999998432 2211100 01136678888874 89998 8999986 8999
Q ss_pred EEEEECCCCCCCc----ceeeeccCC------------CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCc
Q 000054 2346 VVVWDTLAPPTSS----RASITCHEG------------GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGK 2409 (2548)
Q Consensus 2346 VrIWDl~t~~~k~----v~sl~gHs~------------~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk 2409 (2548)
|++||++. .+. +..+.+|.. .|.+++|+|+ +.+|++|+. |.|++||++. .++
T Consensus 251 i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------g~~l~~~~~-~~v~iwd~~~--~~~ 318 (447)
T 3dw8_B 251 IRLCDMRA--SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS-------GRYMMTRDY-LSVKVWDLNM--ENR 318 (447)
T ss_dssp EEEEETTT--CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT-------SSEEEEEES-SEEEEEETTC--CSS
T ss_pred EEEEECcC--CccccceeeEeccCCCccccccccccCceEEEEEECCC-------CCEEEEeeC-CeEEEEeCCC--Ccc
Confidence 99999986 333 677778776 9999999998 789999998 9999999642 144
Q ss_pred eeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC---------------CEEEEEEeCCCCEEEEEeC
Q 000054 2410 TKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG---------------SVTRISTVPNTSLFLTGSK 2474 (2548)
Q Consensus 2410 ~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~---------------~VtsLafSPdG~~LaSGS~ 2474 (2548)
.+..+ .+|.. .+..++|+|++++|++|+.
T Consensus 319 ~~~~~------------------------------------~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~ 362 (447)
T 3dw8_B 319 PVETY------------------------------------QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY 362 (447)
T ss_dssp CSCCE------------------------------------ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS
T ss_pred cccee------------------------------------eccccccccccccccccccccceEEEECCCCCEEEEecc
Confidence 44443 22221 2345999999999999999
Q ss_pred CCcEEEEECCCCcEEE
Q 000054 2475 DGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2475 DGtIrIWDl~Tgell~ 2490 (2548)
||.|++||+.+++.+.
T Consensus 363 dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 363 NNFFRMFDRNTKRDIT 378 (447)
T ss_dssp TTEEEEEETTTCCEEE
T ss_pred CCEEEEEEcCCCccee
Confidence 9999999999998864
No 91
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.6e-22 Score=243.30 Aligned_cols=238 Identities=8% Similarity=-0.039 Sum_probs=177.1
Q ss_pred EcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccc
Q 000054 2227 SHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2227 fSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i 2306 (2548)
+.+++.++++|+.||+|++||+.+++.+..+.. ..|.++.|+|+ +++|+.||+|++|+.......
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~------------~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~ 108 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITT------------PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI 108 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEEE------------ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEec------------CCceeeeeCCc---eEEecCCCeEEEEEccCceEE
Confidence 345778999999999999999999998887752 56778888888 999999999999987632100
Q ss_pred c-cccCcccee-ccCCcccEEE--EcC--CCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEEEEEccCCC
Q 000054 2307 N-VRPMESCLC-FSSHAMDVSY--ITS--SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2307 ~-i~p~~s~~t-~~gH~~~V~a--fSp--dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtSLafsP~dl 2379 (2548)
. ......... ..+|...|.+ ++| +++++++++ .||+|++||++. ++.+.... .|...+++++|+|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s---~dg~i~~wd~~~--~~~~~~~~~~~~~~i~~~~~~pd-- 181 (343)
T 3lrv_A 109 LDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWAD---NRGTIGFQSYED--DSQYIVHSAKSDVEYSSGVLHKD-- 181 (343)
T ss_dssp EETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEE---TTCCEEEEESSS--SCEEEEECCCSSCCCCEEEECTT--
T ss_pred eecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEe---CCCcEEEEECCC--CcEEEEEecCCCCceEEEEECCC--
Confidence 0 000011111 2355566764 789 999999986 899999999986 45554443 45568999999998
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCcee-eeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC-CCCCE
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTK-KHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA-HLGSV 2457 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l-~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g-H~~~V 2457 (2548)
+.++++|+.||.|++||++ +++.+ ..+ .+ |.+.|
T Consensus 182 -----g~~lasg~~dg~i~iwd~~---~~~~~~~~~------------------------------------~~~h~~~v 217 (343)
T 3lrv_A 182 -----SLLLALYSPDGILDVYNLS---SPDQASSRF------------------------------------PVDEEAKI 217 (343)
T ss_dssp -----SCEEEEECTTSCEEEEESS---CTTSCCEEC------------------------------------CCCTTSCE
T ss_pred -----CCEEEEEcCCCEEEEEECC---CCCCCccEE------------------------------------eccCCCCE
Confidence 7899999999999999954 44443 333 44 99999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEEC-CC
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG-DG 2534 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~-DG 2534 (2548)
++++|+|+|.+|++|+ |+.|++||+++++.+.++. .+.+|...+.. .+++|+|+| |++|+. |+
T Consensus 218 ~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~~~~~g~~l~~~s~~d~ 283 (343)
T 3lrv_A 218 KEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP-----------TYTIPEFKTGT--VTYDIDDSGKNMIAYSNESN 283 (343)
T ss_dssp EEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC-----------CCBC-----CC--EEEEECTTSSEEEEEETTTT
T ss_pred EEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec-----------ccccccccccc--eEEEECCCCCEEEEecCCCC
Confidence 9999999999999999 5599999999887665441 11223333322 457999999 888888 99
Q ss_pred cEEEEECCCC
Q 000054 2535 SVKLIQLEDY 2544 (2548)
Q Consensus 2535 tIrIWDL~sg 2544 (2548)
.|++|+++.+
T Consensus 284 ~i~v~~~~~~ 293 (343)
T 3lrv_A 284 SLTIYKFDKK 293 (343)
T ss_dssp EEEEEEECTT
T ss_pred cEEEEEEccc
Confidence 9999999654
No 92
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.88 E-value=2e-21 Score=241.77 Aligned_cols=233 Identities=18% Similarity=0.254 Sum_probs=192.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|++++|++|+.||.|++||+.+++.+..+.. |.+.|.+++| +++.+++|+.||.|++||++
T Consensus 137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG----------HQARVGCLSW--NRHVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC----------CCCceEEEEE--CCCEEEEEcCCCCEEEEecc
Confidence 68999999999999999999999999999988877642 5589999999 46899999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
.... ....+.+|...|.+ ++|+++++++++ .|+.|++||++. .+.+..+..|...|.+++|+|++
T Consensus 205 ~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d~~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~p~~- 271 (401)
T 4aez_A 205 IANH-------QIGTLQGHSSEVCGLAWRSDGLQLASGG---NDNVVQIWDARS--SIPKFTKTNHNAAVKAVAWCPWQ- 271 (401)
T ss_dssp SSSC-------EEEEEECCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTC--SSEEEEECCCSSCCCEEEECTTS-
T ss_pred cCcc-------eeeEEcCCCCCeeEEEEcCCCCEEEEEe---CCCeEEEccCCC--CCccEEecCCcceEEEEEECCCC-
Confidence 5432 12346788888874 899999999997 899999999986 67788888999999999999974
Q ss_pred CCCCCCCEEEEEe--CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc----cCCCCCceEEEcc---
Q 000054 2380 GSGSVSPLIVTGG--KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS----KPGDQNGMLWYIP--- 2450 (2548)
Q Consensus 2380 g~gs~g~lLVSGS--~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v----~s~D~sv~Iwdi~--- 2450 (2548)
..++++|+ .||.|++|| +.+++.+..+.. ......+.++++++.+ +..++.+++|++.
T Consensus 272 -----~~ll~~~~gs~d~~i~i~d---~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 272 -----SNLLATGGGTMDKQIHFWN---AATGARVNTVDA-----GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338 (401)
T ss_dssp -----TTEEEEECCTTTCEEEEEE---TTTCCEEEEEEC-----SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE
T ss_pred -----CCEEEEecCCCCCEEEEEE---CCCCCEEEEEeC-----CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc
Confidence 66888876 799999999 456777766621 2235678999999983 4468999999843
Q ss_pred -------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2451 -------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2451 -------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.+|.+.|.+++|+|++++|++|+.||.|++||+.+++.+...
T Consensus 339 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 339 LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 479999999999999999999999999999999999887654
No 93
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.4e-21 Score=243.62 Aligned_cols=263 Identities=12% Similarity=0.129 Sum_probs=193.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc---eeEEEeccCC------------------------------------
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK---ATATYGVLPA------------------------------------ 2262 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~---~l~t~~~l~g------------------------------------ 2262 (2548)
+.+++|+|+|++|+++ .++.|++||+.+|+ .+..+.....
T Consensus 7 ~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 7 LQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred EEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 4678899999966655 57899999999998 5555542111
Q ss_pred --------CCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEEcC--CCcccccccCccceeccCCcccEE--EEcC
Q 000054 2263 --------ANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQLE--VGGRSNVRPMESCLCFSSHAMDVS--YITS 2329 (2548)
Q Consensus 2263 --------hs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVWDl~--tgk~i~i~p~~s~~t~~gH~~~V~--afSp 2329 (2548)
.....+.|.+.|++++|+|++++| ++|+.||+|++||+. +++..... ....|...|. +|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~------~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR------KRFCFSKRPNAISIAE 159 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE------EEEECSSCEEEEEECT
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee------ecccCCCCceEEEEcC
Confidence 000012456689999999999996 899999999999998 66433211 0124556665 4899
Q ss_pred CCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCCeEEEEEccC-CCCCCCCCCEEEEEeCCCcEEEEeCCccc
Q 000054 2330 SGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGGARSISVFDN-DLGSGSVSPLIVTGGKGGDVGIHDFRYIA 2406 (2548)
Q Consensus 2330 dGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~VtSLafsP~-dlg~gs~g~lLVSGS~DGtVrLWDLR~l~ 2406 (2548)
++++|++++ .||.|++||+...... ....+.+|.+.|++++|+|+ + .+.+|++|+.|+.|++||+ .
T Consensus 160 ~~~~l~~~~---~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-----~~~~l~s~~~d~~i~vwd~---~ 228 (450)
T 2vdu_B 160 DDTTVIIAD---KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSD-----GHQFIITSDRDEHIKISHY---P 228 (450)
T ss_dssp TSSEEEEEE---TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTT-----SCEEEEEEETTSCEEEEEE---S
T ss_pred CCCEEEEEe---CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCC-----CCcEEEEEcCCCcEEEEEC---C
Confidence 999999986 8999999999763222 34477899999999999997 1 1469999999999999994 4
Q ss_pred cCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000054 2407 TGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2407 TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
+++.+..+ ..+|.+.|++++|+ ++++|++|+.||+|++||++++
T Consensus 229 ~~~~~~~~-----------------------------------~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 229 QCFIVDKW-----------------------------------LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG 272 (450)
T ss_dssp CTTCEEEE-----------------------------------CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTC
T ss_pred CCceeeee-----------------------------------ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC
Confidence 55555442 25799999999999 9999999999999999999999
Q ss_pred cEEEEecccccccccccCcccCCC----------CceeecEEEEEEcCCe--EEEEE-CCCcEEEEEC
Q 000054 2487 QLVYHWSKLHERHTFLQPSSRGFG----------GVVRAGVTDIQVVSRG--FLSCG-GDGSVKLIQL 2541 (2548)
Q Consensus 2487 ell~tL~~~Hs~hsfl~~tl~GH~----------~~V~a~VtsLafSPdG--LaSGS-~DGtIrIWDL 2541 (2548)
+++..+...+....+. +..|. ......|.+++|+|++ +++++ .|+.|++|++
T Consensus 273 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 273 KNLSTFDYNSLIKPYL---NDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CEEEEEECHHHHGGGC---CTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cEeeeecchhhhhhhh---hhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 9998884221111110 00010 0112347888999999 77777 8999999999
No 94
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.5e-21 Score=236.03 Aligned_cols=260 Identities=13% Similarity=0.161 Sum_probs=189.0
Q ss_pred eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEEc----CCCcc------ccc--
Q 000054 2242 HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH-RFASAALDGTVCTWQL----EVGGR------SNV-- 2308 (2548)
Q Consensus 2242 sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~-~LaSGS~DGtVrVWDl----~tgk~------i~i-- 2308 (2548)
.+.+|++......... ..|.+.|++++|+|+++ +|++|+.||.|++||+ .+++. ...
T Consensus 26 ~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 95 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKE----------IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELR 95 (425)
T ss_dssp --------CCCEECEE----------EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEE
T ss_pred ccccccchhhhhheee----------eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccc
Confidence 3567777654433222 12558999999999999 9999999999999999 77652 110
Q ss_pred ccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCC
Q 000054 2309 RPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSP 2386 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~ 2386 (2548)
.+........+|...|.+ |+|++++|++++ .||.|++||.. ++.+..+.+|...|.+++|+|+ ++
T Consensus 96 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~i~~~~---~~~~~~~~~~~~~v~~~~~~~~-------~~ 162 (425)
T 1r5m_A 96 HPFALSASSGKTTNQVTCLAWSHDGNSIVTGV---ENGELRLWNKT---GALLNVLNFHRAPIVSVKWNKD-------GT 162 (425)
T ss_dssp CCCCCC------CBCEEEEEECTTSSEEEEEE---TTSCEEEEETT---SCEEEEECCCCSCEEEEEECTT-------SS
T ss_pred ccccccccccCCCCceEEEEEcCCCCEEEEEe---CCCeEEEEeCC---CCeeeeccCCCccEEEEEECCC-------CC
Confidence 010001112235667764 899999999987 89999999932 6778888999999999999998 78
Q ss_pred EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC-----------CccccccccCCCCCC-ccCCCCCceEEEcc----
Q 000054 2387 LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS-----------SINTCAHADAQTGSG-SKPGDQNGMLWYIP---- 2450 (2548)
Q Consensus 2387 lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s-----------~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~---- 2450 (2548)
+|++++.||.|++|| +.+++.+..+....... ......+.+++++.+ ++..++.+++|++.
T Consensus 163 ~l~~~~~d~~i~iwd---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~ 239 (425)
T 1r5m_A 163 HIISMDVENVTILWN---VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP 239 (425)
T ss_dssp EEEEEETTCCEEEEE---TTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC
T ss_pred EEEEEecCCeEEEEE---CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce
Confidence 999999999999999 45666666652221110 011455677777776 67788899999853
Q ss_pred ----cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000054 2451 ----KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2451 ----~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
.+|...|.+++|+|++++|++++.||.|++||+++++.+..+ .+|.. .|.+++|+|++
T Consensus 240 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------------~~~~~----~i~~~~~~~~~ 301 (425)
T 1r5m_A 240 TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCF--------------YGHSQ----SIVSASWVGDD 301 (425)
T ss_dssp SEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEE--------------CCCSS----CEEEEEEETTT
T ss_pred eeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEe--------------cCCCc----cEEEEEECCCC
Confidence 478999999999999999999999999999999998877666 45654 35778999998
Q ss_pred -EEEEECCCcEEEEECCCCc
Q 000054 2527 -FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2527 -LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+++++.||.|++||+.++.
T Consensus 302 ~l~~~~~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 302 KVISCSMDGSVRLWSLKQNT 321 (425)
T ss_dssp EEEEEETTSEEEEEETTTTE
T ss_pred EEEEEeCCCcEEEEECCCCc
Confidence 8999999999999998764
No 95
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.88 E-value=8.1e-21 Score=238.07 Aligned_cols=234 Identities=17% Similarity=0.289 Sum_probs=189.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+|+|++|++|+.||+|+|||+.+++.+..+.. |...|.++.++ +..+++|+.|+.+++||..
T Consensus 150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~----------h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~ 217 (420)
T 4gga_A 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS----------HSARVGSLSWN--SYILSSGSRSGHIHHHDVR 217 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEEE--TTEEEEEETTSEEEEEETT
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC----------CCCceEEEeeC--CCEEEEEeCCCceeEeeec
Confidence 79999999999999999999999999999998887643 55889888875 7899999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCC--CcceeeeccCCCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPT--SSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~--k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
.... ....+.+|...+.. ++++++.+++++ .|+.|++||...... ..+.....|.+.|.+++|+|.
T Consensus 218 ~~~~-------~~~~~~~h~~~~~~~~~~~~g~~l~s~~---~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~ 287 (420)
T 4gga_A 218 VAEH-------HVATLSGHSQEVCGLRWAPDGRHLASGG---NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287 (420)
T ss_dssp SSSC-------EEEEEECCSSCEEEEEECTTSSEEEEEE---TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTT
T ss_pred ccce-------eeEEecccccceeeeeecCCCCeeeeee---ccccceEEeeccccccceeeeeecccCCceeeeeeCCC
Confidence 6532 22346788887764 899999999997 899999999976322 245677789999999999998
Q ss_pred CCCCCCCCCEEEEE--eCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--c--cCCCCCceEEEc--
Q 000054 2378 DLGSGSVSPLIVTG--GKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--S--KPGDQNGMLWYI-- 2449 (2548)
Q Consensus 2378 dlg~gs~g~lLVSG--S~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v--~s~D~sv~Iwdi-- 2449 (2548)
+ ..+++++ +.||+|++|| +.++++...+... .....+.+++++.. + +..++.+++|+.
T Consensus 288 ~------~~~la~~~gs~D~~I~iwd---~~t~~~~~~~~~~-----~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 288 Q------SNVLATGGGTSDRHIRIWN---VCSGACLSAVDAH-----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp C------TTEEEEEECTTTCEEEEEE---TTTTEEEEEEECS-----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred c------ccEEEEEeecCCCEEEEEe---CCccccceeeccc-----cceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence 5 6677764 4799999999 5567777665221 23455677888776 2 346789999985
Q ss_pred ------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000054 2450 ------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYH 2491 (2548)
Q Consensus 2450 ------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~t 2491 (2548)
+.+|.+.|++++|+|+|++|+|||.||+|+|||+....+...
T Consensus 354 ~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 354 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence 468999999999999999999999999999999987655443
No 96
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.87 E-value=2.9e-21 Score=239.15 Aligned_cols=198 Identities=12% Similarity=0.059 Sum_probs=159.5
Q ss_pred EEEEEEcCCCCEEEEE--ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVG--SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASG--S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
+++++|+|||++++++ +.|++|+|||+.+++.+..+. |.+.|.+++|+|+|+++++++.| .+++|+
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-----------~~~~V~~v~fspdg~~l~s~s~~-~~~~~~ 203 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-----------TRGEVKDLHFSTDGKVVAYITGS-SLEVIS 203 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-----------CSSCCCEEEECTTSSEEEEECSS-CEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-----------CCCceEEEEEccCCceEEeccce-eEEEEE
Confidence 6889999999998754 478999999999999887763 34779999999999999999855 566677
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCC----eEEEEECCCCCCC--cceeeeccCCCeEE
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGI----NVVVWDTLAPPTS--SRASITCHEGGARS 2371 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DG----tVrIWDl~t~~~k--~v~sl~gHs~~VtS 2371 (2548)
..+++.... ....+|...|.+ |+|+++.+++++ .|+ .+++||+...... ....+.+|...|++
T Consensus 204 ~~~~~~~~~------~~~~~~~~~v~~v~fspdg~~l~~~s---~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~ 274 (365)
T 4h5i_A 204 TVTGSCIAR------KTDFDKNWSLSKINFIADDTVLIAAS---LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITS 274 (365)
T ss_dssp TTTCCEEEE------ECCCCTTEEEEEEEEEETTEEEEEEE---ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEE
T ss_pred eccCcceee------eecCCCCCCEEEEEEcCCCCEEEEEe---cCCcceeEEeecccccceecceeeeeecCCCCCeEe
Confidence 666653321 224567777764 899999999986 444 6888888653222 23567789999999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
++|+|+ +++|++|+.||+|+||| ..+++++..+ ..
T Consensus 275 ~~~Spd-------g~~lasgs~D~~V~iwd---~~~~~~~~~~-----------------------------------~~ 309 (365)
T 4h5i_A 275 MDVDMK-------GELAVLASNDNSIALVK---LKDLSMSKIF-----------------------------------KQ 309 (365)
T ss_dssp EEECTT-------SCEEEEEETTSCEEEEE---TTTTEEEEEE-----------------------------------TT
T ss_pred EEECCC-------CCceEEEcCCCEEEEEE---CCCCcEEEEe-----------------------------------cC
Confidence 999999 78999999999999999 5567776664 26
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
+|...|++|+|+|||++|+|||.|++|+|||+..
T Consensus 310 gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 310 AHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 8999999999999999999999999999999964
No 97
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.87 E-value=2.3e-20 Score=251.19 Aligned_cols=233 Identities=17% Similarity=0.159 Sum_probs=186.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|++++|++|+.||.|++||+.+++.+..+.. |.+.|++++|+|++++|++|+.||+|++||++
T Consensus 58 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 127 (814)
T 3mkq_A 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA----------HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127 (814)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC----------CSSCEEEEEECSSSSEEEEEETTSEEEEEEGG
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec----------CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECC
Confidence 58999999999999999999999999999998887743 55889999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC-CCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE-GGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs-~~VtSLafsP~ 2377 (2548)
++... ...+.+|...|.+ |+| +++.+++++ .||.|++||+.. ......+..|. ..+.+++|+|.
T Consensus 128 ~~~~~-------~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~v~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~ 195 (814)
T 3mkq_A 128 NNWAL-------EQTFEGHEHFVMCVAFNPKDPSTFASGC---LDRTVKVWSLGQ--STPNFTLTTGQERGVNYVDYYPL 195 (814)
T ss_dssp GTSEE-------EEEEECCSSCEEEEEEETTEEEEEEEEE---TTSEEEEEETTC--SSCSEEEECCCTTCCCEEEECCS
T ss_pred CCceE-------EEEEcCCCCcEEEEEEEcCCCCEEEEEe---CCCeEEEEECCC--CcceeEEecCCCCCEEEEEEEEC
Confidence 76321 2346678877764 888 788999986 899999999976 45555555544 89999999993
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc-----
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP----- 2450 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~----- 2450 (2548)
. .+.++++|+.||.|++|| ..+++.+..+... ......+.++|+|.. +++.++.+++|+..
T Consensus 196 ~-----~~~~l~~~~~dg~i~~~d---~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 196 P-----DKPYMITASDDLTIKIWD---YQTKSCVATLEGH----MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (814)
T ss_dssp T-----TCCEEEEECTTSEEEEEE---TTTTEEEEEEECC----SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE
T ss_pred C-----CCCEEEEEeCCCEEEEEE---CCCCcEEEEEcCC----CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 1 178999999999999999 4556766665221 223567789999987 66778999999853
Q ss_pred ---cCCCCCEEEEEEeCCCC--EEEEEeCCCcEEEEECCCCcEE
Q 000054 2451 ---KAHLGSVTRISTVPNTS--LFLTGSKDGDVKLWDAKAAQLV 2489 (2548)
Q Consensus 2451 ---~gH~~~VtsLafSPdG~--~LaSGS~DGtIrIWDl~Tgell 2489 (2548)
..|...|.+++|+|++. +++++ .|+.+.+|++..+...
T Consensus 264 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 306 (814)
T 3mkq_A 264 KTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPT 306 (814)
T ss_dssp EEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCC
T ss_pred EEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCce
Confidence 35788999999999987 45555 5777889998755433
No 98
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.87 E-value=5.6e-22 Score=239.77 Aligned_cols=208 Identities=20% Similarity=0.286 Sum_probs=161.2
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcC--CCCEEEEEeccCCC
Q 000054 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS--SGSVIAAAGHSSNG 2343 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp--dGslLATgG~SS~D 2343 (2548)
.+|.+.|++++|+|+|++|++|+.||+|++||+++++.. ....+.+|...|.+ |++ ++++|++++ .|
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~------~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s---~D 80 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI------LIADLRGHEGPVWQVAWAHPMYGNILASCS---YD 80 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE------EEEEEECCSSCEEEEEECCGGGSSCEEEEE---TT
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE------EEEEEcCCCccEEEEEeCCCCCCCEEEEEE---CC
Confidence 357799999999999999999999999999999876421 12347799998875 655 488999986 89
Q ss_pred CeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCc
Q 000054 2344 INVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSI 2423 (2548)
Q Consensus 2344 GtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~ 2423 (2548)
++|++||++.+.......+.+|.+.|++++|+|+. .+.+|++|+.||+|++||++ .+......
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~-----~g~~lasgs~D~~i~lwd~~---~~~~~~~~--------- 143 (316)
T 3bg1_A 81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHD-----YGLILACGSSDGAISLLTYT---GEGQWEVK--------- 143 (316)
T ss_dssp SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTT-----TCSCEEEECSSSCEEEEEEC---SSSCEEEC---------
T ss_pred CEEEEEECCCCcceEEEEccCCCCceEEEEECCCC-----CCcEEEEEcCCCCEEEEecC---CCCCccee---------
Confidence 99999999864334667788999999999999972 25699999999999999954 22111100
Q ss_pred cccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC-----------------CCEEEEEeCCCcEEEEECCCC
Q 000054 2424 NTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN-----------------TSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2424 ~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd-----------------G~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
....+|...|.+++|+|+ +++|++|+.||+|++||++.+
T Consensus 144 ------------------------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 144 ------------------------KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp ------------------------CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT
T ss_pred ------------------------eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC
Confidence 112567778888888886 479999999999999999755
Q ss_pred c---EEEEecccccccccccCcccCCCCceeecEEEEEEcCCe------EEEEECCCcEEEEECCC
Q 000054 2487 Q---LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG------FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2487 e---ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG------LaSGS~DGtIrIWDL~s 2543 (2548)
. ++.+ +.+|.+. |.+++|+|++ |++|+.||+|++|++++
T Consensus 200 ~~~~~~~~--------------l~~h~~~----V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 200 GQWKEEQK--------------LEAHSDW----VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp SCEEEEEC--------------CBCCSSC----EEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred Cccceeee--------------cccCCCc----eEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 2 3332 4788754 4677999974 99999999999999876
No 99
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.87 E-value=3.6e-20 Score=219.18 Aligned_cols=248 Identities=17% Similarity=0.149 Sum_probs=168.8
Q ss_pred EEEEEEcC--CCCEEEEEECCCeEEEEEcCCCc---------eeEEEeccCCCCCCCCCCCCCeEEEEEccC--CCEEEE
Q 000054 2222 TRAFSSHP--LRPFFLVGSSNTHIYLWEFGKDK---------ATATYGVLPAANVPPPYALASISALQFDHY--GHRFAS 2288 (2548)
Q Consensus 2222 V~~VsfSP--dG~~LASGS~DGsVrLWDl~tg~---------~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd--G~~LaS 2288 (2548)
+.+++|+| ++.+|++|+.||.|++||+.+++ .+..+ . .|.+.|.+++|+|+ ++++++
T Consensus 60 v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~---~-------~~~~~v~~~~~~~~~~~~~l~~ 129 (351)
T 3f3f_A 60 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL---N-------DSKGSLYSVKFAPAHLGLKLAC 129 (351)
T ss_dssp EEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE---C-------CCSSCEEEEEECCGGGCSEEEE
T ss_pred EEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee---c-------ccCCceeEEEEcCCCCCcEEEE
Confidence 68999999 69999999999999999998763 23333 2 25589999999999 999999
Q ss_pred EeCCCcEEEEEcCCCcccccccCcc-----ceeccCCcccEEE--EcCC---CCEEEEEeccCCCCeEEEEECCCCCCCc
Q 000054 2289 AALDGTVCTWQLEVGGRSNVRPMES-----CLCFSSHAMDVSY--ITSS---GSVIAAAGHSSNGINVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2289 GS~DGtVrVWDl~tgk~i~i~p~~s-----~~t~~gH~~~V~a--fSpd---GslLATgG~SS~DGtVrIWDl~t~~~k~ 2358 (2548)
|+.||.|++||+++++......... .....+|...+.+ ++|+ +..+++++ .|+.+.+|+........
T Consensus 130 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~ 206 (351)
T 3f3f_A 130 LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA---LEQAIIYQRGKDGKLHV 206 (351)
T ss_dssp EETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE---TTEEEEEEECTTSCEEE
T ss_pred ecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec---CCCcEEEEccCCCceee
Confidence 9999999999998876432211000 0011245555553 7886 88999987 88999888876532334
Q ss_pred ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--
Q 000054 2359 RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-- 2436 (2548)
Q Consensus 2359 v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-- 2436 (2548)
+..+.+|.+.|++++|+|+. +....+|++|+.||.|++||++. +......... .........++....
T Consensus 207 ~~~~~~h~~~i~~~~~~p~~---~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 276 (351)
T 3f3f_A 207 AAKLPGHKSLIRSISWAPSI---GRWYQLIATGCKDGRIRIFKITE---KLSPLASEES----LTNSNMFDNSADVDMDA 276 (351)
T ss_dssp EEECCCCCSCEEEEEECCCS---SCSSEEEEEEETTSCEEEEEEEE---CC-----------------------------
T ss_pred eeecCCCCcceeEEEECCCC---CCcceEEEEEcCCCeEEEEeCCC---CcCccccCCc----ccceeccCCCccccccc
Confidence 77888999999999999982 00016999999999999999653 2222111000 000011111111111
Q ss_pred ----ccCCCCC--------ceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2437 ----SKPGDQN--------GMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2437 ----v~s~D~s--------v~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
....... ......+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 277 QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp --------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 1111111 2333456789999999999999999999999999999999988766555
No 100
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.87 E-value=6.9e-21 Score=233.46 Aligned_cols=242 Identities=12% Similarity=0.121 Sum_probs=186.1
Q ss_pred EEEEEEcCC----C---CEEEEEECCCeEEEEEcCCCce-----eEEEeccCCCCCCCCCCCCCeEEEEEc----cCCCE
Q 000054 2222 TRAFSSHPL----R---PFFLVGSSNTHIYLWEFGKDKA-----TATYGVLPAANVPPPYALASISALQFD----HYGHR 2285 (2548)
Q Consensus 2222 V~~VsfSPd----G---~~LASGS~DGsVrLWDl~tg~~-----l~t~~~l~ghs~~~~~H~~~VtsVaFS----PdG~~ 2285 (2548)
+.+++|+|+ + .+|++|+.||.|++||+.+++. ...+..+..+ .+...|.+++|+ |++++
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~ 139 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD-----MKKHSFWALKWGASNDRLLSH 139 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT-----GGGSCEEEEEEECCC----CE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccc-----cCCCcEEEEEEeeccCCCCce
Confidence 588999999 9 9999999999999999998876 6665432211 004889999999 99999
Q ss_pred -EEEEeCCCcEEEEEcCC------CcccccccCccceec-------cCCcccEE--EEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2286 -FASAALDGTVCTWQLEV------GGRSNVRPMESCLCF-------SSHAMDVS--YITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2286 -LaSGS~DGtVrVWDl~t------gk~i~i~p~~s~~t~-------~gH~~~V~--afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
|++|+.||.|++||+++ ++.....+ ...+ ..|...|. .++|++ ++++++ .|+.|++|
T Consensus 140 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~---~dg~i~i~ 212 (397)
T 1sq9_A 140 RLVATDVKGTTYIWKFHPFADESNSLTLNWSP---TLELQGTVESPMTPSQFATSVDISERG-LIATGF---NNGTVQIS 212 (397)
T ss_dssp EEEEEETTSCEEEEEEESSSSHHHHTTTCCCC---EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC---TTSEEEEE
T ss_pred EEEEEeCCCcEEEEeCCccccccccceeeccC---cceeeeeeccccCCCCCceEEEECCCc-eEEEEe---CCCcEEEE
Confidence 99999999999999987 54332111 1123 34566555 489999 888885 89999999
Q ss_pred ECCCCCCCcceeeec---c---CCCeEEEEEccCCCCCCCCCCEEEEEeCC---CcEEEEeCCccccCceeeeecCCCC-
Q 000054 2350 DTLAPPTSSRASITC---H---EGGARSISVFDNDLGSGSVSPLIVTGGKG---GDVGIHDFRYIATGKTKKHKHSDRG- 2419 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~g---H---s~~VtSLafsP~dlg~gs~g~lLVSGS~D---GtVrLWDLR~l~TGk~l~tl~~~~~- 2419 (2548)
|++. .+.+..+.. | ...|.+++|+|+ +.+|++|+.| |.|++||+ .+++.+..+.....
T Consensus 213 d~~~--~~~~~~~~~~~~h~~~~~~i~~i~~~~~-------~~~l~~~~~d~~~g~i~i~d~---~~~~~~~~~~~~~~~ 280 (397)
T 1sq9_A 213 ELST--LRPLYNFESQHSMINNSNSIRSVKFSPQ-------GSLLAIAHDSNSFGCITLYET---EFGERIGSLSVPTHS 280 (397)
T ss_dssp ETTT--TEEEEEEECCC---CCCCCEEEEEECSS-------TTEEEEEEEETTEEEEEEEET---TTCCEEEEECBC---
T ss_pred ECCC--CceeEEEeccccccccCCccceEEECCC-------CCEEEEEecCCCCceEEEEEC---CCCcccceeccCccc
Confidence 9986 677888888 9 999999999998 7899999999 99999995 45676666532100
Q ss_pred --------CCCccccccccCCCCCC--ccCCCCCceEEEc--------cc------CC---------------CCCEEEE
Q 000054 2420 --------GSSINTCAHADAQTGSG--SKPGDQNGMLWYI--------PK------AH---------------LGSVTRI 2460 (2548)
Q Consensus 2420 --------~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi--------~~------gH---------------~~~VtsL 2460 (2548)
........+.++|++++ +++.++.+++|++ +. +| ...|+++
T Consensus 281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 360 (397)
T ss_dssp -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred ccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE
Confidence 02234567889999988 5667888999985 34 67 8999999
Q ss_pred EEeCCC----------CEEEEEeCCCcEEEEECCCCc
Q 000054 2461 STVPNT----------SLFLTGSKDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2461 afSPdG----------~~LaSGS~DGtIrIWDl~Tge 2487 (2548)
+|+|++ ++|++|+.||.|++||+++|+
T Consensus 361 ~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 361 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 999998 799999999999999998764
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.87 E-value=1e-20 Score=232.96 Aligned_cols=243 Identities=12% Similarity=0.138 Sum_probs=171.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVWDl 2300 (2548)
|.+++|+|+|++|++|+.|| ++|||..+++...... ...+..+++.++++.+ ++|+.|++|++||+
T Consensus 22 V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 22 VTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE------------MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp CCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE------------CSCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred eEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee------------cCCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 68999999999999998775 7899998876654432 1347788999988877 56788899999999
Q ss_pred CCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
.+++.+.. +. +...|.++..+.+.++++ .|+.|++||+... .+.+..+.. ....+++++.
T Consensus 89 ~~~~~~~~--------~~-~~~~v~~v~~~~~~~~~~----~~~~i~i~d~~~~-~~~~~~~~~---~~~~~~~s~~--- 148 (355)
T 3vu4_A 89 VKKQDVSR--------IK-VDAPVKDLFLSREFIVVS----YGDVISVFKFGNP-WKRITDDIR---FGGVCEFSNG--- 148 (355)
T ss_dssp TTTEEEEE--------EE-CSSCEEEEEECSSEEEEE----ETTEEEEEESSTT-CCBSSCCEE---EEEEEEEETT---
T ss_pred CCCcEEEE--------EE-CCCceEEEEEcCCEEEEE----EcCEEEEEECCCC-ceeeEEecc---CCceEEEEcc---
Confidence 98864321 22 344666544444556665 3789999999862 145555544 3334455553
Q ss_pred CCCCCCEEEE--EeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceE-EEcccCCCCCE
Q 000054 2381 SGSVSPLIVT--GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGML-WYIPKAHLGSV 2457 (2548)
Q Consensus 2381 ~gs~g~lLVS--GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~I-wdi~~gH~~~V 2457 (2548)
.++. |+.||.|++||++ +++........ . ......- ...+.+|.+.|
T Consensus 149 ------~la~~sg~~~g~v~iwd~~---~~~~~~~~~~~-~--------------------~~~~~~p~~~~~~~h~~~v 198 (355)
T 3vu4_A 149 ------LLVYSNEFNLGQIHITKLQ---SSGSATTQDQG-V--------------------QQKAILGKGVLIKAHTNPI 198 (355)
T ss_dssp ------EEEEEESSCTTCEEEEECC---C---------------------------------------CCEEECCCSSCE
T ss_pred ------EEEEeCCCcCcEEEEEECC---CCCcccccccc-c--------------------cccccCcccEEEEccCCce
Confidence 5665 6899999999954 33211110000 0 0000000 12347899999
Q ss_pred EEEEEeCCCCEEEEEeCCCc-EEEEECCCCcEEEEecccccccccccCcccC-CCCceeecEEEEEEcCCe--EEEEECC
Q 000054 2458 TRISTVPNTSLFLTGSKDGD-VKLWDAKAAQLVYHWSKLHERHTFLQPSSRG-FGGVVRAGVTDIQVVSRG--FLSCGGD 2533 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGt-IrIWDl~Tgell~tL~~~Hs~hsfl~~tl~G-H~~~V~a~VtsLafSPdG--LaSGS~D 2533 (2548)
++++|+|+|++|++|+.||+ |++||+++++++.++. .| |.+ .|.+++|+|+| |++|+.|
T Consensus 199 ~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~-------------~g~h~~----~v~~~~~s~~~~~l~s~s~d 261 (355)
T 3vu4_A 199 KMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR-------------RGLDRA----DVVDMKWSTDGSKLAVVSDK 261 (355)
T ss_dssp EEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE-------------CTTCCS----CEEEEEECTTSCEEEEEETT
T ss_pred EEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE-------------cCCCCC----cEEEEEECCCCCEEEEEECC
Confidence 99999999999999999998 9999999999998872 24 653 45778999999 8999999
Q ss_pred CcEEEEECCCC
Q 000054 2534 GSVKLIQLEDY 2544 (2548)
Q Consensus 2534 GtIrIWDL~sg 2544 (2548)
|+|++||+.++
T Consensus 262 ~~v~iw~~~~~ 272 (355)
T 3vu4_A 262 WTLHVFEIFND 272 (355)
T ss_dssp CEEEEEESSCC
T ss_pred CEEEEEEccCC
Confidence 99999999765
No 102
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1e-21 Score=245.45 Aligned_cols=281 Identities=14% Similarity=0.143 Sum_probs=198.2
Q ss_pred EcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCcc
Q 000054 2227 SHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGR 2305 (2548)
Q Consensus 2227 fSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl~tgk~ 2305 (2548)
|+|++..+++++ .|+ .+++.+..+. .+|.+.|++++|+| ++++|++|+.||+|++||+.+...
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~---------~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~ 98 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLM---------ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV 98 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEEC---------TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT
T ss_pred cCCccccccccc------ccc-ccceEEeeec---------cCCCCceEEEEECCCCCCEEEEecCCceEEEeECccccc
Confidence 457777777654 366 4566666651 23669999999999 999999999999999999976211
Q ss_pred cccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCC-CCCcceeeec------------cCCCeE
Q 000054 2306 SNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAP-PTSSRASITC------------HEGGAR 2370 (2548)
Q Consensus 2306 i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~-~~k~v~sl~g------------Hs~~Vt 2370 (2548)
.. .......+ +|...|.+ |+|+++++++++ .||.|++||+... .++....+.+ +...+.
T Consensus 99 ~~--~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 172 (437)
T 3gre_A 99 GE--VYSSSLTY-DCSSTVTQITMIPNFDAFAVSS---KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV 172 (437)
T ss_dssp TC--CCSCSEEE-ECSSCEEEEEECTTSSEEEEEE---TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE
T ss_pred Cc--ccceeeec-cCCCCEEEEEEeCCCCEEEEEe---CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce
Confidence 10 01111222 47777874 899999999997 8999999999521 1333333332 445566
Q ss_pred EEEEc--cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceE
Q 000054 2371 SISVF--DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGML 2446 (2548)
Q Consensus 2371 SLafs--P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~I 2446 (2548)
++.+. ++ +.++++|+.||.|++||+ .+++.+..+.... .......++++|++.+ +++.|+.+++
T Consensus 173 ~~~~~~~~~-------~~~l~~~~~d~~i~iwd~---~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~i 240 (437)
T 3gre_A 173 RMRAFVNEE-------KSLLVALTNLSRVIIFDI---RTLERLQIIENSP--RHGAVSSICIDEECCVLILGTTRGIIDI 240 (437)
T ss_dssp EEEEEECSS-------CEEEEEEETTSEEEEEET---TTCCEEEEEECCG--GGCCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred EEEEEEcCC-------CCEEEEEeCCCeEEEEeC---CCCeeeEEEccCC--CCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence 66633 34 679999999999999994 5577776663210 1224567889999987 6788899999
Q ss_pred EEcc--------c-CCCCCEEEEEEeC----CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccc----------ccc
Q 000054 2447 WYIP--------K-AHLGSVTRISTVP----NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHT----------FLQ 2503 (2548)
Q Consensus 2447 wdi~--------~-gH~~~VtsLafSP----dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hs----------fl~ 2503 (2548)
|++. . +|...|++++|+| ++.+|++|+.||.|++||+++++++..+........ +..
T Consensus 241 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (437)
T 3gre_A 241 WDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEE 320 (437)
T ss_dssp EETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGG
T ss_pred EEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccc
Confidence 9852 2 6778999996665 678999999999999999999999988852111100 000
Q ss_pred CcccC--CCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCCc
Q 000054 2504 PSSRG--FGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2504 ~tl~G--H~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
..+.+ |.+. |++++|+++. |++|+.||+|++||+.++.
T Consensus 321 ~~~~~~~~~~~----v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 321 LNFCGIRSLNA----LSTISVSNDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp CCCCCCCSGGG----GCCEEEETTEEEEEEGGGTEEEEEETTCGG
T ss_pred ceecccccCCc----eEEEEECCceEEEecCCCCeEEEEECCCcc
Confidence 11334 5543 4667899554 8999999999999998764
No 103
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.6e-20 Score=259.14 Aligned_cols=259 Identities=12% Similarity=0.054 Sum_probs=188.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+|++++||+|+.||+|+||+..+++....+ .|...|++++|+| |++|++++.|++|++||++
T Consensus 20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-----------~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-----------EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-----------SSCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred cEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-----------CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence 699999999999999999999999998877654442 1457899999999 8899999999999999999
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc-----------eeeeccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR-----------ASITCHEGG 2368 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v-----------~sl~gHs~~ 2368 (2548)
+++.... +. |...|. +|+|+++++++|+ .||.|++||++.. +.. ..+.+|.+.
T Consensus 88 ~~~~~~~--------~~-~~~~V~~v~~sp~g~~l~sgs---~dg~V~lwd~~~~--~~~~~~i~~~~~~~~~~~~h~~~ 153 (902)
T 2oaj_A 88 SQKVLTT--------VF-VPGKITSIDTDASLDWMLIGL---QNGSMIVYDIDRD--QLSSFKLDNLQKSSFFPAARLSP 153 (902)
T ss_dssp TCSEEEE--------EE-CSSCEEEEECCTTCSEEEEEE---TTSCEEEEETTTT--EEEEEEECCHHHHHTCSSSCCCC
T ss_pred CCcEEEE--------Ec-CCCCEEEEEECCCCCEEEEEc---CCCcEEEEECCCC--ccccceeccccccccccccCCCC
Confidence 8764321 22 445565 4899999999986 8999999999762 221 234679999
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEE
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY 2448 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwd 2448 (2548)
|++++|+|++ +..+++|+.||.| +||+ .+++.+..+....... .+.+ +... .
T Consensus 154 V~sl~~sp~~------~~~l~~g~~dg~v-lWd~---~~~~~~~~~~~~~~~g---------~~~~------~~~~---~ 205 (902)
T 2oaj_A 154 IVSIQWNPRD------IGTVLISYEYVTL-TYSL---VENEIKQSFIYELPPF---------APGG------DFSE---K 205 (902)
T ss_dssp CCEEEEETTE------EEEEEEECSSCEE-EEET---TTTEEEEEECCCBCTT---------CCCS------TTCC---C
T ss_pred eEEEEEccCC------CCEEEEEeCCCcE-EEEC---CCCceEEEEecccCCc---------CCCc------cccc---c
Confidence 9999999974 5689999999999 9995 4566666652110000 0000 0000 2
Q ss_pred cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEE--ecc--cccccccccCccc---CCCCceeecEEEEE
Q 000054 2449 IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYH--WSK--LHERHTFLQPSSR---GFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2449 i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~t--L~~--~Hs~hsfl~~tl~---GH~~~V~a~VtsLa 2521 (2548)
...+|...|++++|+|+|++|++|+.||+|++||+++++++.. +.. .|..... ... .|. ..|++++
T Consensus 206 ~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~---~~~~~~~~~----~~V~~v~ 278 (902)
T 2oaj_A 206 TNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPD---YIRDSSTNA----AKISKVY 278 (902)
T ss_dssp TTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTT---CCCCCSSCC----CEEEEEE
T ss_pred cccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCc---CCCCCcccc----CCeeEEE
Confidence 3356888999999999999999999999999999999998764 210 0110000 000 122 3467778
Q ss_pred E----cCCe---EEEEECC-----CcEEEEEC
Q 000054 2522 V----VSRG---FLSCGGD-----GSVKLIQL 2541 (2548)
Q Consensus 2522 f----SPdG---LaSGS~D-----GtIrIWDL 2541 (2548)
| +|++ +++||.| +++++|++
T Consensus 279 w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 279 WMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred EEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 8 4664 6677776 37889985
No 104
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.5e-20 Score=234.39 Aligned_cols=261 Identities=10% Similarity=-0.012 Sum_probs=192.5
Q ss_pred EEEEEEcCCCCEE-EEEECCCeEEEEEcC--CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFF-LVGSSNTHIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~L-ASGS~DGsVrLWDl~--tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
+.+++|+|++++| ++|+.||.|+|||+. +++.+..+... .|...|++++|+|++++|++|+.||.|.+|
T Consensus 105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--------CFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE--------ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc--------cCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 6999999999996 899999999999999 88887776531 144789999999999999999999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEE--EcCC---CCEEEEEeccCCCCeEEEEECCCCCCCccee-eeccCCCeEEE
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS---GSVIAAAGHSSNGINVVVWDTLAPPTSSRAS-ITCHEGGARSI 2372 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd---GslLATgG~SS~DGtVrIWDl~t~~~k~v~s-l~gHs~~VtSL 2372 (2548)
++.++..... ....+.+|...|.+ |+|+ +++|++++ .|+.|++||+.. ++.+.. +.+|.+.|+++
T Consensus 177 ~~~~~~~~~~----~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~---~d~~i~vwd~~~--~~~~~~~~~~h~~~v~~~ 247 (450)
T 2vdu_B 177 DINSIPEEKF----TQEPILGHVSMLTDVHLIKDSDGHQFIITSD---RDEHIKISHYPQ--CFIVDKWLFGHKHFVSSI 247 (450)
T ss_dssp ETTSCCCSSC----CCCCSEECSSCEEEEEEEECTTSCEEEEEEE---TTSCEEEEEESC--TTCEEEECCCCSSCEEEE
T ss_pred ecCCcccccc----cceeeecccCceEEEEEcCCCCCCcEEEEEc---CCCcEEEEECCC--CceeeeeecCCCCceEEE
Confidence 9987753210 11235678887764 8899 88999986 899999999976 556655 56899999999
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC---CCCCCccCCCCCceEEEc
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA---QTGSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS---pdGk~v~s~D~sv~Iwdi 2449 (2548)
+|+ + +.+|++|+.||+|++|| +.+++++..+..... ...+.+. +...... +.
T Consensus 248 ~~s-d-------~~~l~s~~~d~~v~vwd---~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---------~~ 302 (450)
T 2vdu_B 248 CCG-K-------DYLLLSAGGDDKIFAWD---WKTGKNLSTFDYNSL-----IKPYLNDQHLAPPRFQN---------EN 302 (450)
T ss_dssp EEC-S-------TTEEEEEESSSEEEEEE---TTTCCEEEEEECHHH-----HGGGCCTTSBC-----------------
T ss_pred EEC-C-------CCEEEEEeCCCeEEEEE---CCCCcEeeeecchhh-----hhhhhhhcccccccccc---------cc
Confidence 999 6 78999999999999999 556777666521000 0000000 0000000 00
Q ss_pred ccCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEEC--CCC---cEEEEecccccccccccCcccCCCCceeecEEEEEEc
Q 000054 2450 PKAHLGSVTRISTVPNTSLFLTGS-KDGDVKLWDA--KAA---QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVV 2523 (2548)
Q Consensus 2450 ~~gH~~~VtsLafSPdG~~LaSGS-~DGtIrIWDl--~Tg---ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafS 2523 (2548)
...+...|.+++|+|++++|++++ .|+.|++||+ .++ +.+..+ .+| + .|.+++|+
T Consensus 303 ~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~--------------~~~-~----~v~~~~~~ 363 (450)
T 2vdu_B 303 NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII--------------TFP-Y----NVISLSAH 363 (450)
T ss_dssp --CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE--------------ECS-S----CEEEEEEE
T ss_pred cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe--------------ccC-C----ceEEEEec
Confidence 013456899999999999999999 8999999999 555 445444 445 2 35788999
Q ss_pred CCe-EEEEEC-------CCcEEEEECCC
Q 000054 2524 SRG-FLSCGG-------DGSVKLIQLED 2543 (2548)
Q Consensus 2524 PdG-LaSGS~-------DGtIrIWDL~s 2543 (2548)
|++ +++++. +..|++|.++.
T Consensus 364 ~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 364 NDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp TTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred CCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 988 555433 55689998753
No 105
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.86 E-value=4.8e-21 Score=230.19 Aligned_cols=247 Identities=17% Similarity=0.240 Sum_probs=180.8
Q ss_pred CCCCeEEEEEccCCCEEE-EEeC---CCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCC---CCEEEEEecc
Q 000054 2270 ALASISALQFDHYGHRFA-SAAL---DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS---GSVIAAAGHS 2340 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~La-SGS~---DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd---GslLATgG~S 2340 (2548)
|.+.|++++|+|++..++ +|+. ||.|++||+.+++.... ...+|...|.+ |+|+ ++++++++
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~l~~~~-- 87 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL-------REIEKAKPIKCGTFGATSLQQRYLATGD-- 87 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE-------EEEEESSCEEEEECTTCCTTTCCEEEEE--
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce-------eeecccCcEEEEEEcCCCCCCceEEEec--
Confidence 668999999999986555 5555 99999999997753321 12356777764 7887 69999986
Q ss_pred CCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCc-eeeeecCCCC
Q 000054 2341 SNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGK-TKKHKHSDRG 2419 (2548)
Q Consensus 2341 S~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk-~l~tl~~~~~ 2419 (2548)
.||.|++||+... ...+..+.+|.+.|.++.|.+. +...+.+++|++|+.||.|++||++ +++ .+..+.....
T Consensus 88 -~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~s~~~~~l~~~~~d~~i~vwd~~---~~~~~~~~~~~~~~ 161 (357)
T 3i2n_A 88 -FGGNLHIWNLEAP-EMPVYSVKGHKEIINAIDGIGG-LGIGEGAPEIVTGSRDGTVKVWDPR---QKDDPVANMEPVQG 161 (357)
T ss_dssp -TTSCEEEECTTSC-SSCSEEECCCSSCEEEEEEESG-GGCC-CCCEEEEEETTSCEEEECTT---SCSSCSEEECCCTT
T ss_pred -CCCeEEEEeCCCC-CccEEEEEecccceEEEeeccc-cccCCCccEEEEEeCCCeEEEEeCC---CCCCcceeccccCC
Confidence 8999999999863 2378889999999999977541 0001127899999999999999965 343 3444422222
Q ss_pred CCCccccccc----cCCCCCC--ccCCCCCceEEEcc-------cCCCCCEEEEEEeC---CCCEEEEEeCCCcEEEEEC
Q 000054 2420 GSSINTCAHA----DAQTGSG--SKPGDQNGMLWYIP-------KAHLGSVTRISTVP---NTSLFLTGSKDGDVKLWDA 2483 (2548)
Q Consensus 2420 ~s~~~~~~va----fSpdGk~--v~s~D~sv~Iwdi~-------~gH~~~VtsLafSP---dG~~LaSGS~DGtIrIWDl 2483 (2548)
........+. +++++.+ ++..++.+++|++. ..|...|.+++|+| ++.+|++|+.||.|++||+
T Consensus 162 ~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 162 ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 2122223333 7888887 56677899999964 35889999999999 9999999999999999999
Q ss_pred CCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCC
Q 000054 2484 KAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2484 ~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
++++.+..+. ...+.+|.. .|++++|+|++ +++|+.||.|++||+.++
T Consensus 242 ~~~~~~~~~~---------~~~~~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 242 RTQHPTKGFA---------SVSEKAHKS----TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEEETTTEEE---------EEEEECCSS----CEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred cCCCccccee---------eeccCCCcC----CEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 8765443331 001246764 45777999998 889999999999999754
No 106
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.8e-20 Score=219.39 Aligned_cols=227 Identities=17% Similarity=0.225 Sum_probs=181.1
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVr 2347 (2548)
|.+.|++++| +++++|++|+.||.|++||+.++... ..+..|...|.+ ++|+++++++++ .|+.|+
T Consensus 17 h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~ 84 (313)
T 3odt_A 17 HDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLG--------TVVYTGQGFLNSVCYDSEKELLLFGG---KDTMIN 84 (313)
T ss_dssp CSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEE--------EEEEECSSCEEEEEEETTTTEEEEEE---TTSCEE
T ss_pred CCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEE--------EEeecCCccEEEEEECCCCCEEEEec---CCCeEE
Confidence 5699999999 99999999999999999999876432 235567777764 899999999997 899999
Q ss_pred EEECCCCC-CCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2348 VWDTLAPP-TSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2348 IWDl~t~~-~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
+|++.... .+.+..+.+|...|.++.|. +..+++|+.||.|++||. ++....+.. +.. ...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~l~~~~~d~~i~~~d~-----~~~~~~~~~---~~~-~v~ 146 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSFQ---------DGVVISGSWDKTAKVWKE-----GSLVYNLQA---HNA-SVW 146 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEEE---------TTEEEEEETTSEEEEEET-----TEEEEEEEC---CSS-CEE
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEec---------CCEEEEEeCCCCEEEEcC-----CcEEEeccc---CCC-cee
Confidence 99987532 34577888999999999994 349999999999999992 344444321 111 223
Q ss_pred ccccCC-CCCC--ccCCCCCceEEEc------ccC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000054 2427 AHADAQ-TGSG--SKPGDQNGMLWYI------PKA-HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2427 ~vafSp-dGk~--v~s~D~sv~Iwdi------~~g-H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
.+.+.+ ++.. +++.++.+++|+. +.. |...|.+++|+|++. +++|+.||.|++||+++++.+..+
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~---- 221 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY---- 221 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE----
T ss_pred EEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh----
Confidence 344444 6665 6778899999984 233 899999999999998 999999999999999999998877
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCCc
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+ .|++++|+|++ +++++.||.|++||+.++.
T Consensus 222 ----------~~~~~----~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 222 ----------EGHES----FVYCIKLLPNGDIVSCGEDRTVRIWSKENGS 257 (313)
T ss_dssp ----------ECCSS----CEEEEEECTTSCEEEEETTSEEEEECTTTCC
T ss_pred ----------hcCCc----eEEEEEEecCCCEEEEecCCEEEEEECCCCc
Confidence 46664 45778999999 9999999999999998774
No 107
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.86 E-value=1e-20 Score=226.73 Aligned_cols=244 Identities=11% Similarity=0.117 Sum_probs=186.5
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCC-EEEEEeccCCCCe
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGS-VIAAAGHSSNGIN 2345 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGs-lLATgG~SS~DGt 2345 (2548)
.|.+.|++++|+|++++|++|+.||.|++||+.++.... ......+|...|.+ |+|+++ ++++++ .||.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~ 80 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-----DLLQSLRYKHPLLCCNFIDNTDLQIYVGT---VQGE 80 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-----EEEEEEECSSCEEEEEEEESSSEEEEEEE---TTSC
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc-----cceeeeecCCceEEEEECCCCCcEEEEEc---CCCe
Confidence 467999999999999999999999999999998764111 11234577777764 889999 999986 8999
Q ss_pred EEEEEC-CCCCCCcceeeec--cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCcccc------CceeeeecC
Q 000054 2346 VVVWDT-LAPPTSSRASITC--HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIAT------GKTKKHKHS 2416 (2548)
Q Consensus 2346 VrIWDl-~t~~~k~v~sl~g--Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~T------Gk~l~tl~~ 2416 (2548)
|++||+ .. .....+.+ |...|.+++|+|. ..+++|+.||.|++||++.... ++.+..+.
T Consensus 81 i~~wd~~~~---~~~~~~~~~~~~~~v~~l~~~~~--------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~- 148 (342)
T 1yfq_A 81 ILKVDLIGS---PSFQALTNNEANLGICRICKYGD--------DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK- 148 (342)
T ss_dssp EEEECSSSS---SSEEECBSCCCCSCEEEEEEETT--------TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-
T ss_pred EEEEEeccC---CceEeccccCCCCceEEEEeCCC--------CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-
Confidence 999999 75 24467778 9999999999983 3999999999999999652100 33333321
Q ss_pred CCCCCCccccccccCCCCCCccCCCCCceEEEccc-----------CCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECC
Q 000054 2417 DRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK-----------AHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2417 ~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~-----------gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.......+.+++++-.++..++.+++|++.. .|...|.+++|+| +++++++|+.||.|++||++
T Consensus 149 ----~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 149 ----VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp ----SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred ----eCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 2233456788888855788889999999654 3677899999999 99999999999999999998
Q ss_pred CC------cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2485 AA------QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2485 Tg------ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+ +....+. .|.... .-.+|. ..|.+++|+|++ |++|+.||.|++||+.++.
T Consensus 225 ~~~~~~~~~~~~~~~-~~~~~~----~~~~~~----~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFR-CHRLNL----KDTNLA----YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp TTCCSTTCTTCEEEE-CCCCCT----TCCSSC----CCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred CCCcccccccceeee-cccccc----cccccc----eeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 76 6555552 111000 001222 346788999999 9999999999999998764
No 108
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.85 E-value=9e-20 Score=226.96 Aligned_cols=269 Identities=9% Similarity=0.062 Sum_probs=205.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.+++|+|++.++++++.|+.|++||..+++....+... ...+|.+.|.+++|+++++.+++++.||.|++||+++
T Consensus 126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPE-----KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCH-----HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcc-----cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence 57889997778888889999999999998877543210 0123568899999999999999999999999999987
Q ss_pred CcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
++... .+..|...+. +++|+++.+++++ +.|+.|++||+++ ++.+..+.. ...+.+++|+|+
T Consensus 201 ~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~d~~~--~~~~~~~~~-~~~~~~~~~~~~--- 264 (433)
T 3bws_A 201 LAYKA--------TVDLTGKWSKILLYDPIRDLVYCSN--WISEDISVIDRKT--KLEIRKTDK-IGLPRGLLLSKD--- 264 (433)
T ss_dssp CCEEE--------EEECSSSSEEEEEEETTTTEEEEEE--TTTTEEEEEETTT--TEEEEECCC-CSEEEEEEECTT---
T ss_pred ceEEE--------EEcCCCCCeeEEEEcCCCCEEEEEe--cCCCcEEEEECCC--CcEEEEecC-CCCceEEEEcCC---
Confidence 75332 2445665554 4899999886665 4789999999976 555666654 456999999998
Q ss_pred CCCCCCEEEEEe--------CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC---ccCCCCCceEEEc
Q 000054 2381 SGSVSPLIVTGG--------KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG---SKPGDQNGMLWYI 2449 (2548)
Q Consensus 2381 ~gs~g~lLVSGS--------~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~---v~s~D~sv~Iwdi 2449 (2548)
+..+++++ .||.|++||+ .+++.+..... ......++++|+|+. .+..++.+++|+.
T Consensus 265 ----g~~l~~~~~~~~~~~~~dg~i~~~d~---~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 265 ----GKELYIAQFSASNQESGGGRLGIYSM---DKEKLIDTIGP-----PGNKRHIVSGNTENKIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp ----SSEEEEEEEESCTTCSCCEEEEEEET---TTTEEEEEEEE-----EECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred ----CCEEEEEECCCCccccCCCeEEEEEC---CCCcEEeeccC-----CCCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence 67888887 5899999994 45555544311 112345788999974 3467888999996
Q ss_pred cc-------CCCCCEEEEEEeCCCCEEEEEeC---------------CCcEEEEECCCCcEEEEecccccccccccCccc
Q 000054 2450 PK-------AHLGSVTRISTVPNTSLFLTGSK---------------DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2450 ~~-------gH~~~VtsLafSPdG~~LaSGS~---------------DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~ 2507 (2548)
.. .+...+.+++|+|+|+++++++. ||.|++||+.+++.+..+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-------------- 398 (433)
T 3bws_A 333 KEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-------------- 398 (433)
T ss_dssp TTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE--------------
T ss_pred CCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec--------------
Confidence 43 36678999999999999988876 5799999999999888762
Q ss_pred CCCCceeecEEEEEEcCCe--EEEEE-CCCcEEEEECCC
Q 000054 2508 GFGGVVRAGVTDIQVVSRG--FLSCG-GDGSVKLIQLED 2543 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG--LaSGS-~DGtIrIWDL~s 2543 (2548)
++ ..+.+++|+|+| +++++ .|++|++|++++
T Consensus 399 ~~-----~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 399 AG-----NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CS-----SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CC-----CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 22 235778999999 66665 599999999864
No 109
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.85 E-value=9.3e-21 Score=236.52 Aligned_cols=255 Identities=12% Similarity=0.050 Sum_probs=167.5
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEcCCCceeEE--EeccCCCCCCCCCCCCCeEEEEEcc--------CCCEEEEEeCCCc
Q 000054 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATAT--YGVLPAANVPPPYALASISALQFDH--------YGHRFASAALDGT 2294 (2548)
Q Consensus 2225 VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t--~~~l~ghs~~~~~H~~~VtsVaFSP--------dG~~LaSGS~DGt 2294 (2548)
..+.+++.++++|+.|++|+|||..+++.... +.. ..+|.+.|++|+|+| ++++|++|+.|++
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~-------~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGG-------KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECT-------TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecc-------cCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 34456778999999999999999998876443 322 345679999999998 7899999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCC-EEEEEeccCCCCeEEEEECCCCCCCc-------------
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSS------------- 2358 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~------------- 2358 (2548)
|++||++++... ....+|...|. +|+|++. ++++++ .|++|++||++++....
T Consensus 168 v~~Wd~~~~~~~--------~~~~~~~~~v~~v~~~p~~~~~l~~~~---~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~ 236 (393)
T 4gq1_A 168 LIIWRLTDEGPI--------LAGYPLSSPGISVQFRPSNPNQLIVGE---RNGNIRIFDWTLNLSAEENSQTELVKNPWL 236 (393)
T ss_dssp EEEEEEETTEEE--------EEEEECSSCEEEEEEETTEEEEEEEEE---TTSEEEEEETTCCC----------CSCCCS
T ss_pred EEEEECCCCcee--------eeecCCCCCcEEEEECCCCCceEEecC---CCCEEEEEECCCCcccccccccCCcccceE
Confidence 999999876532 22445666665 4888875 788875 89999999997632110
Q ss_pred ----------ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000054 2359 ----------RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2359 ----------v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
.....+|...+.++.|.+.+ +..+++++.|+++++||++ +++....+... .......
T Consensus 237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d------g~~l~s~s~d~~i~vwd~~---~~~~~~~l~~~----~~~~~~~ 303 (393)
T 4gq1_A 237 LTLNTLPLVNTCHSSGIASSLANVRWIGSD------GSGILAMCKSGAWLRWNLF---ANNDYNEISDS----TMKLGPK 303 (393)
T ss_dssp EEEESGGGC------CCSSSCSEEEEETTT------TCEEEEECTTSEEEEEEC--------------------------
T ss_pred EecccccceeeeecccccccceeeeeecCC------CCEEEEEeCCCCEEEEECc---cCCCCceEeee----cCccccE
Confidence 01124688889999998554 7899999999999999954 33333322100 0001111
Q ss_pred ccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcc
Q 000054 2429 ADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP--NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSS 2506 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP--dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl 2506 (2548)
.+.++++.. ..+...+ ...++| ++.++++|+.||+|++||+.+++.+..+
T Consensus 304 ~~~~~~~~~-------------~~~~~~~-~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~-------------- 355 (393)
T 4gq1_A 304 NLLPNVQGI-------------SLFPSLL-GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP-------------- 355 (393)
T ss_dssp CCSCSEEEE-------------CSSCCSS-CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE--------------
T ss_pred EEccccccc-------------cccCcce-eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe--------------
Confidence 222222110 1122223 333444 4457778889999999999998877655
Q ss_pred cCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000054 2507 RGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2507 ~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
.+|.. .|.+++|+|+| ||+++.|| +.+|++.+
T Consensus 356 ~~~~~----~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 356 IQLGM----PIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp EECSS----CEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred cCCCC----cEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 34553 46788999999 77777655 66776643
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.9e-20 Score=239.44 Aligned_cols=238 Identities=10% Similarity=0.012 Sum_probs=175.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeE-------EEec-------------cCCCCCCCCCCCCCeEEEEEcc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATA-------TYGV-------------LPAANVPPPYALASISALQFDH 2281 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~-------t~~~-------------l~ghs~~~~~H~~~VtsVaFSP 2281 (2548)
+.+++|+|||+++|+++.|++|+ |...++.+. .+.- ..+.......|.+.|.+++|+|
T Consensus 18 v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSP 95 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSP 95 (588)
T ss_dssp SCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECS
T ss_pred EEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECC
Confidence 48899999999999999999998 655544321 1100 0110111224568899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcc-----cEE--EEcCCCCEEEEEeccCCCCeEEEEECCCC
Q 000054 2282 YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAM-----DVS--YITSSGSVIAAAGHSSNGINVVVWDTLAP 2354 (2548)
Q Consensus 2282 dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~-----~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~ 2354 (2548)
+|.+||+++.||+|++||.+. .. ..+. |.. .|. +|+|||++||+|+ .||+|+|||+..+
T Consensus 96 dG~~LAs~s~dg~V~iwd~~~--~l--------~~l~-~~~~~~~~sv~svafSPDG~~LAsgs---~DGtVkIWd~~~~ 161 (588)
T 2j04_A 96 IDDWMAVLSNNGNVSVFKDNK--ML--------TNLD-SKGNLSSRTYHCFEWNPIESSIVVGN---EDGELQFFSIRKN 161 (588)
T ss_dssp SSSCEEEEETTSCEEEEETTE--EE--------EECC-CSSCSTTTCEEEEEECSSSSCEEEEE---TTSEEEEEECCCC
T ss_pred CCCEEEEEeCCCcEEEEeCCc--ee--------eecc-CCCccccccEEEEEEcCCCCEEEEEc---CCCEEEEEECCCC
Confidence 999999999999999999643 11 1123 332 344 5999999999997 9999999999863
Q ss_pred CC-C----cceee----eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000054 2355 PT-S----SRASI----TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2355 ~~-k----~v~sl----~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
.. . .+..+ .+|.+.|.+++|+|+ + +++++.|++|++||+. .+....
T Consensus 162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd-------g--Laass~D~tVrlWd~~---~~~~~~------------- 216 (588)
T 2j04_A 162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYED-------V--LVAALSNNSVFSMTVS---ASSHQP------------- 216 (588)
T ss_dssp TTTCCCCEEEEEEECSCTTCCCCEEEEEEETT-------E--EEEEETTCCEEEECCC---SSSSCC-------------
T ss_pred ccccccceeeeeeecccccccccEEEEEEcCC-------c--EEEEeCCCeEEEEECC---CCcccc-------------
Confidence 11 0 24565 678889999999998 6 8899999999999943 333210
Q ss_pred cccccCCCCCCccCCCCCceEEEcc-cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccC
Q 000054 2426 CAHADAQTGSGSKPGDQNGMLWYIP-KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQP 2504 (2548)
Q Consensus 2426 ~~vafSpdGk~v~s~D~sv~Iwdi~-~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~ 2504 (2548)
++..+ .+|...|.+++|+ |+.|++++ ||+|++||+.+++.....
T Consensus 217 --------------------~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~------------ 261 (588)
T 2j04_A 217 --------------------VSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK------------ 261 (588)
T ss_dssp --------------------CEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE------------
T ss_pred --------------------ceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE------------
Confidence 11111 3688999999999 68999997 699999999988774322
Q ss_pred cccCCCCceeecEEEEEE--cCCe--EEEEECCCcEEEEECC
Q 000054 2505 SSRGFGGVVRAGVTDIQV--VSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2505 tl~GH~~~V~a~VtsLaf--SPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
.||.+. |++++| +|++ +++++.||+ |+|.++
T Consensus 262 --~gh~~~----V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 262 --TGSLEN----FHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp --CSCCSC----CCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred --cCCCce----EEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 367644 466799 9999 889999999 999975
No 111
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.85 E-value=1.2e-19 Score=214.92 Aligned_cols=230 Identities=16% Similarity=0.267 Sum_probs=179.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+|+++++++|+.||+|++||+.+++.+..+.. |...+.++. +++..+++|+.++.+++|+..
T Consensus 70 V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~----------h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~ 137 (318)
T 4ggc_A 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS----------HSARVGSLS--WNSYILSSGSRSGHIHHHDVR 137 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC----------CSSCEEEEE--EETTEEEEEETTSEEEEEETT
T ss_pred EEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC----------ccceEEEee--cCCCEEEEEecCCceEeeecC
Confidence 69999999999999999999999999999998888753 446676655 457899999999999999988
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~VtSLafsP~ 2377 (2548)
.+.. ....+.+|...+.. +.++++++++++ .|+.|++||+++.... .......|.+.|.++.++|.
T Consensus 138 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 207 (318)
T 4ggc_A 138 VAEH-------HVATLSGHSQEVCGLRWAPDGRHLASGG---NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207 (318)
T ss_dssp SSSC-------EEEEEECCSSCEEEEEECTTSSEEEEEE---TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTT
T ss_pred CCce-------eEEEEcCccCceEEEEEcCCCCEEEEEe---cCcceeEEECCCCcccccceeeecccCCceEEEEecCC
Confidence 6542 12346677777764 889999999986 8999999999863222 34556678899999999998
Q ss_pred CCCCCCCCCEE--EEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC----ccCCCCCceEEEc--
Q 000054 2378 DLGSGSVSPLI--VTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG----SKPGDQNGMLWYI-- 2449 (2548)
Q Consensus 2378 dlg~gs~g~lL--VSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~----v~s~D~sv~Iwdi-- 2449 (2548)
+ ...+ ++|+.+++|++||.+ ......... .........+++++.. .+..++.+++|++
T Consensus 208 ~------~~~~~~~~~~~~~~i~lwd~~---~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~ 273 (318)
T 4ggc_A 208 Q------SNVLATGGGTSDRHIRIWNVC---SGACLSAVD-----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 273 (318)
T ss_dssp S------TTEEEEEECTTTCEEEEEETT---TCCEEEEEE-----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred C------CcEEEEEecCCCCEEEEEecc---ccccccccc-----ceeeeeeeeecccccceEEEEEcCCCEEEEEECCC
Confidence 4 4444 466789999999954 344443331 1122345567777765 2346889999985
Q ss_pred ------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 000054 2450 ------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2450 ------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge 2487 (2548)
+.+|.+.|++++|+|+|++|+|||.||+|+|||+.+..
T Consensus 274 ~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 274 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 46899999999999999999999999999999997643
No 112
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.7e-20 Score=222.21 Aligned_cols=211 Identities=21% Similarity=0.292 Sum_probs=166.9
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCC--CCEEEEEeccCCCC
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS--GSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd--GslLATgG~SS~DG 2344 (2548)
+|.+.|++++|+|++++|++|+.||.|++||+..+... ....+.+|...|.+ |+++ ++++++++ .||
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg 79 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------LIDTLTGHEGPVWRVDWAHPKFGTILASCS---YDG 79 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE------EEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTS
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce------eeeEecCCCCcEEEEEeCCCCCCCEEEEec---cCC
Confidence 46799999999999999999999999999999743211 22347789888875 7766 89999987 899
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000054 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
.|++||+.......+..+.+|...|.+++|+|++ .+.++++|+.||.|++||++. +......
T Consensus 80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~l~~~~~d~~i~v~d~~~---~~~~~~~---------- 141 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-----YGPLLLVASSDGKVSVVEFKE---NGTTSPI---------- 141 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-----GCSEEEEEETTSEEEEEECCT---TSCCCEE----------
T ss_pred EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCC-----CCCEEEEecCCCcEEEEecCC---CCceeeE----------
Confidence 9999999863223677888899999999999872 146999999999999999653 2111111
Q ss_pred ccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC-------------CCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000054 2425 TCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP-------------NTSLFLTGSKDGDVKLWDAKAAQLVYH 2491 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP-------------dG~~LaSGS~DGtIrIWDl~Tgell~t 2491 (2548)
...+|...|.+++|+| ++.+|++|+.||.|++||+++++....
T Consensus 142 ------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 197 (379)
T 3jrp_A 142 ------------------------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 197 (379)
T ss_dssp ------------------------EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEE
T ss_pred ------------------------EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCccee
Confidence 1157899999999999 699999999999999999987653322
Q ss_pred ecccccccccccCcccCCCCceeecEEEEEEcCC---e--EEEEECCCcEEEEECCCC
Q 000054 2492 WSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR---G--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2492 L~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd---G--LaSGS~DGtIrIWDL~sg 2544 (2548)
+. ..+.+|.+. |.+++|+|+ + |++++.||.|++||+.++
T Consensus 198 ~~----------~~~~~h~~~----v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 198 LE----------STLEGHSDW----VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp EE----------EEECCCSSC----EEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred eE----------EEEecccCc----EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 20 113677654 567799999 7 899999999999999875
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.85 E-value=3.6e-19 Score=218.51 Aligned_cols=255 Identities=11% Similarity=0.084 Sum_probs=197.4
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEEcCCCccccccc
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVWDl~tgk~i~i~p 2310 (2548)
.++++++.|+.|++||+.+++.+..+.. | ..+.+++|+|+++++ ++++.|++|++||+.+++....
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~----------~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~-- 69 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPV----------G-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-- 69 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEEC----------S-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE--
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeec----------C-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE--
Confidence 4577899999999999999988877642 2 458999999999977 6777999999999988764322
Q ss_pred CccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEE
Q 000054 2311 MESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLI 2388 (2548)
Q Consensus 2311 ~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lL 2388 (2548)
+..+. .+. +++|+++.+++++ +.++.|++||+.+ ++.+..+.. ...+.+++|+|+ ++.+
T Consensus 70 ------~~~~~-~v~~~~~spdg~~l~~~~--~~~~~v~v~d~~~--~~~~~~~~~-~~~~~~~~~s~d-------g~~l 130 (391)
T 1l0q_A 70 ------VPAGS-SPQGVAVSPDGKQVYVTN--MASSTLSVIDTTS--NTVAGTVKT-GKSPLGLALSPD-------GKKL 130 (391)
T ss_dssp ------EECSS-SEEEEEECTTSSEEEEEE--TTTTEEEEEETTT--TEEEEEEEC-SSSEEEEEECTT-------SSEE
T ss_pred ------EECCC-CccceEECCCCCEEEEEE--CCCCEEEEEECCC--CeEEEEEeC-CCCcceEEECCC-------CCEE
Confidence 22232 443 4899999887766 4789999999986 455555554 457899999998 5655
Q ss_pred -EEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC---ccCCCCCceEEEccc-------CCCCCE
Q 000054 2389 -VTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG---SKPGDQNGMLWYIPK-------AHLGSV 2457 (2548)
Q Consensus 2389 -VSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~---v~s~D~sv~Iwdi~~-------gH~~~V 2457 (2548)
++++.|+.|++|| +.+++.+..+... .....+.++|+|+. .+..++.+++|+... .+...+
T Consensus 131 ~~~~~~~~~v~~~d---~~~~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 202 (391)
T 1l0q_A 131 YVTNNGDKTVSVIN---TVTKAVINTVSVG-----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAP 202 (391)
T ss_dssp EEEETTTTEEEEEE---TTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEE
T ss_pred EEEeCCCCEEEEEE---CCCCcEEEEEecC-----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCc
Confidence 7888899999999 5566766665221 12356789999986 345677899999643 356688
Q ss_pred EEEEEeCCCCEEEEEe---CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--E-EEEE
Q 000054 2458 TRISTVPNTSLFLTGS---KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--F-LSCG 2531 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS---~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--L-aSGS 2531 (2548)
.+++|+|+++++++++ .|+.|++||+.+++.+..+ ..|. .+.+++|+|+| + ++++
T Consensus 203 ~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~--------------~~~~-----~~~~~~~s~dg~~l~~s~~ 263 (391)
T 1l0q_A 203 SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI--------------PVGP-----DPAGIAVTPDGKKVYVALS 263 (391)
T ss_dssp EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE--------------ECCS-----SEEEEEECTTSSEEEEEET
T ss_pred cceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE--------------ecCC-----CccEEEEccCCCEEEEEcC
Confidence 9999999999999888 6899999999999988766 2332 24677999999 4 6888
Q ss_pred CCCcEEEEECCCCc
Q 000054 2532 GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2532 ~DGtIrIWDL~sg~ 2545 (2548)
.|+.|++||+.++.
T Consensus 264 ~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 264 FXNTVSVIDTATNT 277 (391)
T ss_dssp TTTEEEEEETTTTE
T ss_pred CCCEEEEEECCCCc
Confidence 99999999998764
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=6.6e-20 Score=223.36 Aligned_cols=232 Identities=13% Similarity=0.060 Sum_probs=163.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCC---------CceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGK---------DKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAAL 2291 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~t---------g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~ 2291 (2548)
.++.++|+ +++|+.|++|++|+... ++.+..+. ..|.+.|.+++|+| +++++++|+.
T Consensus 80 ~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~l~s~s~ 147 (343)
T 3lrv_A 80 RTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE---------VDSANEIIYMYGHNEVNTEYFIWADN 147 (343)
T ss_dssp CTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE---------CCCSSCEEEEECCC---CCEEEEEET
T ss_pred eeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee---------cCCCCCEEEEEcCCCCCCCEEEEEeC
Confidence 34556676 89999999999997663 33333322 13457899999999 9999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc-eeeec-cCC
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR-ASITC-HEG 2367 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v-~sl~g-Hs~ 2367 (2548)
||+|++||+++++..... ...|...+. +|+|+|.++++|+ .||.|++||+++ ++.+ ..+.+ |.+
T Consensus 148 dg~i~~wd~~~~~~~~~~-------~~~~~~~i~~~~~~pdg~~lasg~---~dg~i~iwd~~~--~~~~~~~~~~~h~~ 215 (343)
T 3lrv_A 148 RGTIGFQSYEDDSQYIVH-------SAKSDVEYSSGVLHKDSLLLALYS---PDGILDVYNLSS--PDQASSRFPVDEEA 215 (343)
T ss_dssp TCCEEEEESSSSCEEEEE-------CCCSSCCCCEEEECTTSCEEEEEC---TTSCEEEEESSC--TTSCCEECCCCTTS
T ss_pred CCcEEEEECCCCcEEEEE-------ecCCCCceEEEEECCCCCEEEEEc---CCCEEEEEECCC--CCCCccEEeccCCC
Confidence 999999999987643211 122333343 5899999999986 899999999987 4554 67777 999
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
.|++++|+|+ +.+|++|+ |+.|++||+|. ++.+..+.
T Consensus 216 ~v~~l~fs~~-------g~~l~s~~-~~~v~iwd~~~---~~~~~~~~-------------------------------- 252 (343)
T 3lrv_A 216 KIKEVKFADN-------GYWMVVEC-DQTVVCFDLRK---DVGTLAYP-------------------------------- 252 (343)
T ss_dssp CEEEEEECTT-------SSEEEEEE-SSBEEEEETTS---STTCBSSC--------------------------------
T ss_pred CEEEEEEeCC-------CCEEEEEe-CCeEEEEEcCC---CCcceeec--------------------------------
Confidence 9999999998 78999999 55999999763 33322220
Q ss_pred EcccCCCCCE--EEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcC
Q 000054 2448 YIPKAHLGSV--TRISTVPNTSLFLTGSK-DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2448 di~~gH~~~V--tsLafSPdG~~LaSGS~-DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
.+..|...+ .+++|+|+|++|++++. |+.|+||++.++...... ..+..++|++
T Consensus 253 -~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----------------------~~~~~~~~~~ 309 (343)
T 3lrv_A 253 -TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----------------------DEESALCLQS 309 (343)
T ss_dssp -CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----------------------EEEEECCC--
T ss_pred -ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----------------------cCceeEecCc
Confidence 001122223 57999999999999998 999999999755432211 1133345555
Q ss_pred ---Ce--EEEEECCCcEEEEECCCC
Q 000054 2525 ---RG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2525 ---dG--LaSGS~DGtIrIWDL~sg 2544 (2548)
++ +++++.||.++++-..++
T Consensus 310 ~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 310 DTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp --CCCCEEEEEEETTEEEEEEECSS
T ss_pred cccccceeEEEecCCceEEEEecCC
Confidence 43 788888888888765544
No 115
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.84 E-value=9e-20 Score=219.15 Aligned_cols=244 Identities=14% Similarity=0.167 Sum_probs=176.1
Q ss_pred CCCCCeEEEEEccC---CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCC
Q 000054 2269 YALASISALQFDHY---GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNG 2343 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPd---G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~D 2343 (2548)
.|.+.|++++|+|+ |++|++|+.||.|++||+++.... ....+.+|...|.+ |+|++++|++++ .|
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~d 107 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT------IPKAQQMHTGPVLDVCWSDDGSKVFTAS---CD 107 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE------EEEEEEECSSCEEEEEECTTSSEEEEEE---TT
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce------eEEEeccccCCEEEEEECcCCCEEEEEc---CC
Confidence 36699999999998 699999999999999999873211 11346778888874 899999999986 89
Q ss_pred CeEEEEECCCCCCCcceeeeccCCCeEEEEE--ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC
Q 000054 2344 INVVVWDTLAPPTSSRASITCHEGGARSISV--FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS 2421 (2548)
Q Consensus 2344 GtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf--sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s 2421 (2548)
|.|++||+.. .+. ..+.+|...|++++| +++ +.++++|+.||.|++||++ +++.+..+....
T Consensus 108 g~v~iwd~~~--~~~-~~~~~~~~~v~~~~~~~~~~-------~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~--- 171 (368)
T 3mmy_A 108 KTAKMWDLSS--NQA-IQIAQHDAPVKTIHWIKAPN-------YSCVMTGSWDKTLKFWDTR---SSNPMMVLQLPE--- 171 (368)
T ss_dssp SEEEEEETTT--TEE-EEEEECSSCEEEEEEEECSS-------CEEEEEEETTSEEEEECSS---CSSCSEEEECSS---
T ss_pred CcEEEEEcCC--CCc-eeeccccCceEEEEEEeCCC-------CCEEEEccCCCcEEEEECC---CCcEEEEEecCC---
Confidence 9999999986 333 346689999999999 665 6799999999999999954 456555552211
Q ss_pred CccccccccCCCCCCccCCCCCceEEEccc----------CCCCCEEEEEEeCCCCE----EEEEeCCCcEEEEECCCC-
Q 000054 2422 SINTCAHADAQTGSGSKPGDQNGMLWYIPK----------AHLGSVTRISTVPNTSL----FLTGSKDGDVKLWDAKAA- 2486 (2548)
Q Consensus 2422 ~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~----------gH~~~VtsLafSPdG~~----LaSGS~DGtIrIWDl~Tg- 2486 (2548)
....+.+..+...++..++.+.+|++.. .+...+.++++.++... +++|+.||.|++||++..
T Consensus 172 --~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 172 --RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp --CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred --CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence 1222233333334777788889998632 24456677777766554 999999999999999977
Q ss_pred --cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2487 --QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2487 --ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+.+..+. .|..... .....+|. ..|++++|+|++ |++|+.||.|++||+.++.
T Consensus 250 ~~~~~~~~~-~~~~~~~-~~~~~~~~----~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 250 PAKDNFTFK-CHRSNGT-NTSAPQDI----YAVNGIAFHPVHGTLATVGSDGRFSFWDKDART 306 (368)
T ss_dssp HHHHSEEEE-CSEEC-----CCCEEE----CCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred ccccceeee-eeecccc-cccccccc----cceEEEEEecCCCEEEEEccCCeEEEEECCCCc
Confidence 4444442 1111000 00011221 247888999999 9999999999999998764
No 116
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.83 E-value=8.9e-20 Score=226.47 Aligned_cols=231 Identities=14% Similarity=0.163 Sum_probs=182.6
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCC-------ceeEEEeccCCCCCCCCCCCCCeEEEEEccCC-CEEEEEeCC
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKD-------KATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALD 2292 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg-------~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG-~~LaSGS~D 2292 (2548)
|.+++|+| ++.+|++|+.||+|++||+.++ +.+..+. +|.+.|++++|+|++ ++|++|+.|
T Consensus 84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~----------~h~~~v~~~~~~p~~~~~l~s~~~d 153 (402)
T 2aq5_A 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE----------GHTKRVGIVAWHPTAQNVLLSAGCD 153 (402)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE----------CCSSCEEEEEECSSBTTEEEEEETT
T ss_pred EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec----------CCCCeEEEEEECcCCCCEEEEEcCC
Confidence 79999999 9999999999999999999987 3444443 356899999999998 799999999
Q ss_pred CcEEEEEcCCCcccccccCccceec--cCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCC
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCF--SSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEG 2367 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~--~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~ 2367 (2548)
|+|++||+++++... .+ .+|...|.+ |+|+++++++++ .|+.|++||++. ++.+..+ .+|.+
T Consensus 154 g~i~iwd~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~--~~~~~~~~~~~~~ 220 (402)
T 2aq5_A 154 NVILVWDVGTGAAVL--------TLGPDVHPDTIYSVDWSRDGALICTSC---RDKRVRVIEPRK--GTVVAEKDRPHEG 220 (402)
T ss_dssp SCEEEEETTTTEEEE--------EECTTTCCSCEEEEEECTTSSCEEEEE---TTSEEEEEETTT--TEEEEEEECSSCS
T ss_pred CEEEEEECCCCCccE--------EEecCCCCCceEEEEECCCCCEEEEEe---cCCcEEEEeCCC--CceeeeeccCCCC
Confidence 999999999875432 24 678888764 899999999986 899999999986 5677777 68887
Q ss_pred C-eEEEEEccCCCCCCCCCCEEEEE---eCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc---cCC
Q 000054 2368 G-ARSISVFDNDLGSGSVSPLIVTG---GKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS---KPG 2440 (2548)
Q Consensus 2368 ~-VtSLafsP~dlg~gs~g~lLVSG---S~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v---~s~ 2440 (2548)
. +.++.|+|+ +.++++| +.||.|++||++........... ........+.++|++..+ +..
T Consensus 221 ~~~~~~~~~~~-------~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~g~~ 288 (402)
T 2aq5_A 221 TRPVHAVFVSE-------GKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-----DTSSGVLLPFFDPDTNIVYLCGKG 288 (402)
T ss_dssp SSCCEEEECST-------TEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-----CCCSSCEEEEEETTTTEEEEEETT
T ss_pred CcceEEEEcCC-------CcEEEEeccCCCCceEEEEcCccccCCceEEec-----cCCCceeEEEEcCCCCEEEEEEcC
Confidence 6 899999998 6788888 79999999996532211111111 112234567899999873 346
Q ss_pred CCCceEEEcccC-----------CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000054 2441 DQNGMLWYIPKA-----------HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV 2489 (2548)
Q Consensus 2441 D~sv~Iwdi~~g-----------H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell 2489 (2548)
|+.+++|++..+ |...|.+++|+|++.++++ .|+.+++|++.+++..
T Consensus 289 dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 289 DSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp CSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred CCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 899999986432 4588999999999998875 5779999999987653
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.83 E-value=5.7e-19 Score=217.02 Aligned_cols=249 Identities=11% Similarity=0.082 Sum_probs=164.1
Q ss_pred eEEEEEEEcCCCC---EEEEEECCCeEEEEEcCCC---ceeEEEeccCCCC---CCC------------CCCCCCeEEEE
Q 000054 2220 ISTRAFSSHPLRP---FFLVGSSNTHIYLWEFGKD---KATATYGVLPAAN---VPP------------PYALASISALQ 2278 (2548)
Q Consensus 2220 V~V~~VsfSPdG~---~LASGS~DGsVrLWDl~tg---~~l~t~~~l~ghs---~~~------------~~H~~~VtsVa 2278 (2548)
+.+.++-|-..|- .++++++ ..|++|+..++ +.+.+.......- .+. .-+...|++++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 40 VDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 3366776655432 4555554 68999999988 5555543321100 001 12334788999
Q ss_pred EccC----CCEEEEEeC--------------------CCcEEEEEcCC-CcccccccCccceeccCCc--ccEEEEcC--
Q 000054 2279 FDHY----GHRFASAAL--------------------DGTVCTWQLEV-GGRSNVRPMESCLCFSSHA--MDVSYITS-- 2329 (2548)
Q Consensus 2279 FSPd----G~~LaSGS~--------------------DGtVrVWDl~t-gk~i~i~p~~s~~t~~gH~--~~V~afSp-- 2329 (2548)
|+|+ +..+++++. |+.|++|++.. |+.. ....+|. ..+.+|++
T Consensus 119 ~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~--------~s~~~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 119 CSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGK--------ENQFLMPPEETILTFAEVQ 190 (356)
T ss_dssp C------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEE--------EEEEECCCSSCEEEEEEEE
T ss_pred ECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCcee--------eeeccCCCceeeEEeeccC
Confidence 9999 888887664 66777777643 3211 1122333 34455666
Q ss_pred -CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC---CCeEEEEEccCCCCCCCCCCEE------------EEEeC
Q 000054 2330 -SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE---GGARSISVFDNDLGSGSVSPLI------------VTGGK 2393 (2548)
Q Consensus 2330 -dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs---~~VtSLafsP~dlg~gs~g~lL------------VSGS~ 2393 (2548)
++.+|++++ .|++|+|||+.+ +++++++.+|. ..+.+++|+|+ +.++ ++|+.
T Consensus 191 g~~~~LaSgS---~D~TIkIWDl~T--Gk~l~tL~g~~~~v~~v~~vafSpd-------G~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 191 GMQEALLGTT---IMNNIVIWNLKT--GQLLKKMHIDDSYQASVCHKAYSEM-------GLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp TSTTEEEEEE---TTSEEEEEETTT--CCEEEEEECCC---CCCEEEEEEET-------TEEEEEEC------------C
T ss_pred CCCceEEEec---CCCcEEEEECCC--CcEEEEEcCCCcceeeeEEEEECCC-------CCEEEEeccCCCcceeeccCC
Confidence 678899986 999999999987 78888888654 46778899998 4444 67889
Q ss_pred CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEe
Q 000054 2394 GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGS 2473 (2548)
Q Consensus 2394 DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS 2473 (2548)
|++|++|| ..+++.+..+ .+....+|...+.+..+ ++.++++|+
T Consensus 259 D~tIklWd---~~tgk~l~v~-------------------------------~~~~p~Gh~~~~lsg~~--sg~~lASgS 302 (356)
T 2w18_A 259 VFQLIVIN---PKTTLSVGVM-------------------------------LYCLPPGQAGRFLEGDV--KDHCAAAIL 302 (356)
T ss_dssp CEEEEEEE---TTTTEEEEEE-------------------------------EECCCTTCCCCEEEEEE--ETTEEEEEE
T ss_pred CcEEEEEE---CCCCEEEEEE-------------------------------EeeccCCCcceeEcccc--CCCEEEEEc
Confidence 99999999 5677766543 11112456665555444 488999999
Q ss_pred CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECC
Q 000054 2474 KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2474 ~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
.||+|+|||+.++++++++ .+|.+.+ +..++|+|+| |+||+.|++|||||+.
T Consensus 303 ~DgTIkIWDl~tGk~l~tL--------------~gH~~~v---vs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 303 TSGTIAIWDLLLGQCTALL--------------PPVSDQH---WSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp TTSCEEEEETTTCSEEEEE--------------CCC--CC---CCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred CCCcEEEEECCCCcEEEEe--------------cCCCCCe---EEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 9999999999999999887 5666533 3346999999 8999999999999963
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.83 E-value=3.7e-19 Score=219.09 Aligned_cols=245 Identities=9% Similarity=0.039 Sum_probs=176.0
Q ss_pred EEEEEcCCCCEE-EEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2223 RAFSSHPLRPFF-LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2223 ~~VsfSPdG~~L-ASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
..+++.++++++ ++|+.|++|++||..+++.+..+. |...|.+++|+++. ++++ .|+.|++||+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-----------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~ 127 (355)
T 3vu4_A 62 SKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-----------VDAPVKDLFLSREF--IVVS-YGDVISVFKFG 127 (355)
T ss_dssp CEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-----------CSSCEEEEEECSSE--EEEE-ETTEEEEEESS
T ss_pred EEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-----------CCCceEEEEEcCCE--EEEE-EcCEEEEEECC
Confidence 445666888877 468889999999999999888774 23689999998764 4443 48899999998
Q ss_pred CC-cccccccCccceeccCCcccEEEEcCCCCEEEEE-eccCCCCeEEEEECCCCC------C-------Cc-ceeeecc
Q 000054 2302 VG-GRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAA-GHSSNGINVVVWDTLAPP------T-------SS-RASITCH 2365 (2548)
Q Consensus 2302 tg-k~i~i~p~~s~~t~~gH~~~V~afSpdGslLATg-G~SS~DGtVrIWDl~t~~------~-------k~-v~sl~gH 2365 (2548)
++ +.... +.. ...+.++++ ..++++ | +.||.|++||+.... . .+ +..+.+|
T Consensus 128 ~~~~~~~~--------~~~-~~~~~~~s~--~~la~~sg--~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h 194 (355)
T 3vu4_A 128 NPWKRITD--------DIR-FGGVCEFSN--GLLVYSNE--FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH 194 (355)
T ss_dssp TTCCBSSC--------CEE-EEEEEEEET--TEEEEEES--SCTTCEEEEECCC------------------CCEEECCC
T ss_pred CCceeeEE--------ecc-CCceEEEEc--cEEEEeCC--CcCcEEEEEECCCCCccccccccccccccCcccEEEEcc
Confidence 76 33221 122 344556777 677765 4 489999999998631 0 12 7788999
Q ss_pred CCCeEEEEEccCCCCCCCCCCEEEEEeCCCc-EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCc
Q 000054 2366 EGGARSISVFDNDLGSGSVSPLIVTGGKGGD-VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNG 2444 (2548)
Q Consensus 2366 s~~VtSLafsP~dlg~gs~g~lLVSGS~DGt-VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv 2444 (2548)
.+.|++++|+|+ +.+|++|+.||+ |++|| +.+++++..+
T Consensus 195 ~~~v~~~~~s~~-------g~~l~s~s~d~~~v~iwd---~~~~~~~~~~------------------------------ 234 (355)
T 3vu4_A 195 TNPIKMVRLNRK-------SDMVATCSQDGTIIRVFK---TEDGVLVREF------------------------------ 234 (355)
T ss_dssp SSCEEEEEECTT-------SSEEEEEETTCSEEEEEE---TTTCCEEEEE------------------------------
T ss_pred CCceEEEEECCC-------CCEEEEEeCCCCEEEEEE---CCCCcEEEEE------------------------------
Confidence 999999999998 789999999998 99999 5567777665
Q ss_pred eEEEccc-C-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE--EEecccccccccccC-------cccCCCCce
Q 000054 2445 MLWYIPK-A-HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV--YHWSKLHERHTFLQP-------SSRGFGGVV 2513 (2548)
Q Consensus 2445 ~Iwdi~~-g-H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell--~tL~~~Hs~hsfl~~-------tl~GH~~~V 2513 (2548)
. + |.+.|++++|+|+|++|++|+.||+|++||++.+... ..+...... .++.. .+.....
T Consensus 235 ------~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 305 (355)
T 3vu4_A 235 ------RRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINM-KYFQSEWSLCNFKLSVDKH-- 305 (355)
T ss_dssp ------ECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEEC-CCCCCSSCSEEEECCCCTT--
T ss_pred ------EcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeec-cccccccceeEEEeccCCC--
Confidence 3 5 8999999999999999999999999999999865321 111000000 00000 0000000
Q ss_pred eecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2514 RAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2514 ~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
.....++|+++| +++++.||.+++|++..+
T Consensus 306 -~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 306 -VRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp -CCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred -CCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 012456999999 889999999999998653
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.83 E-value=3e-19 Score=225.07 Aligned_cols=212 Identities=17% Similarity=0.207 Sum_probs=164.8
Q ss_pred CCCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcCCCccccc--ccCccceeccCCcccEE--EEcCCCC-EEEEEeccCC
Q 000054 2269 YALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRSNV--RPMESCLCFSSHAMDVS--YITSSGS-VIAAAGHSSN 2342 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~tgk~i~i--~p~~s~~t~~gH~~~V~--afSpdGs-lLATgG~SS~ 2342 (2548)
.|.+.|++++|+|+ +.++++|+.||.|++||+........ ........+.+|...|. +|+|++. +|++++ .
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---~ 202 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS---D 202 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC---T
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe---C
Confidence 36789999999997 78999999999999999976311100 00123345678887775 4889888 888886 8
Q ss_pred CCeEEEEECCCCCCC-----cceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCC
Q 000054 2343 GINVVVWDTLAPPTS-----SRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSD 2417 (2548)
Q Consensus 2343 DGtVrIWDl~t~~~k-----~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~ 2417 (2548)
||.|++||+...... ....+.+|...|.+++|+|.+ +.++++++.||.|++||++.....+.+..+
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~------~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~--- 273 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH------ESLFGSVADDQKLMIWDTRNNNTSKPSHTV--- 273 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC------TTEEEEEETTSEEEEEETTCSCSSSCSEEE---
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC------CCEEEEEeCCCeEEEEECCCCCCCcceeEe---
Confidence 999999999863211 145677899999999999964 789999999999999997642212222222
Q ss_pred CCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCC-CcEEEEeccc
Q 000054 2418 RGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTS-LFLTGSKDGDVKLWDAKA-AQLVYHWSKL 2495 (2548)
Q Consensus 2418 ~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~-~LaSGS~DGtIrIWDl~T-gell~tL~~~ 2495 (2548)
.+|...|++++|+|++. ++++|+.||.|++||+++ ++.+.++
T Consensus 274 ---------------------------------~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~--- 317 (430)
T 2xyi_A 274 ---------------------------------DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF--- 317 (430)
T ss_dssp ---------------------------------ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE---
T ss_pred ---------------------------------ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe---
Confidence 57899999999999987 799999999999999997 4555544
Q ss_pred ccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCC
Q 000054 2496 HERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~s 2543 (2548)
.+|.+ .|++++|+|++ |++|+.||+|++||+..
T Consensus 318 -----------~~h~~----~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 318 -----------ESHKD----EIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp -----------ECCSS----CEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred -----------ecCCC----CEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 56654 45778999998 88999999999999976
No 120
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.82 E-value=7.6e-19 Score=220.96 Aligned_cols=222 Identities=18% Similarity=0.269 Sum_probs=177.8
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
|...|+++.| +++++++|+.||+|++||+.+++.. ..+.+|...|.++..+++++++|+ .||.|++|
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~--------~~~~~h~~~v~~l~~~~~~l~sg~---~dg~i~vw 198 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK--------RILTGHTGSVLCLQYDERVIITGS---SDSTVRVW 198 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE--------EEECCCSSCEEEEECCSSEEEEEE---TTSCEEEE
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEE--------EEEcCCCCcEEEEEECCCEEEEEc---CCCeEEEE
Confidence 4578998887 7999999999999999999887543 347789999998888999999997 89999999
Q ss_pred ECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCcee---eeecCCCCCCCcccc
Q 000054 2350 DTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTK---KHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l---~tl~~~~~~s~~~~~ 2426 (2548)
|+.+ ++.+..+.+|.+.|.++.|+++ .+++|+.||.|++||++ +++.. ..+ ..+. ....
T Consensus 199 d~~~--~~~~~~~~~h~~~v~~l~~~~~---------~l~s~s~dg~i~vwd~~---~~~~~~~~~~~---~~~~-~~v~ 260 (435)
T 1p22_A 199 DVNT--GEMLNTLIHHCEAVLHLRFNNG---------MMVTCSKDRSIAVWDMA---SPTDITLRRVL---VGHR-AAVN 260 (435)
T ss_dssp ESSS--CCEEEEECCCCSCEEEEECCTT---------EEEEEETTSCEEEEECS---SSSCCEEEEEE---CCCS-SCEE
T ss_pred ECCC--CcEEEEEcCCCCcEEEEEEcCC---------EEEEeeCCCcEEEEeCC---CCCCceeeeEe---cCCC-CcEE
Confidence 9986 6788899999999999999754 99999999999999964 33333 222 1111 1223
Q ss_pred ccccCCCCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000054 2427 AHADAQTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2427 ~vafSpdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
.+.+ ++.. +++.|+.+++|++ +.+|...|.++++ ++.++++|+.||.|++||+++++++.++
T Consensus 261 ~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~---- 332 (435)
T 1p22_A 261 VVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL---- 332 (435)
T ss_dssp EEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE----
T ss_pred EEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE----
Confidence 3344 5555 6778899999995 3479999999999 4789999999999999999999998877
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCeEEEEECCCcEEEEECCCC
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWDL~sg 2544 (2548)
.+|.+. |.+++|++..+++|+.||+|++||+.++
T Consensus 333 ----------~~h~~~----v~~~~~~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 333 ----------EGHEEL----VRCIRFDNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp ----------CCCSSC----EEEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred ----------eCCcCc----EEEEEecCCEEEEEeCCCcEEEEECCCC
Confidence 567654 4566784444999999999999998643
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.80 E-value=2.4e-19 Score=223.77 Aligned_cols=239 Identities=14% Similarity=0.073 Sum_probs=145.3
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcC--------CCCEEEEEeccCCC
Q 000054 2274 ISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS--------SGSVIAAAGHSSNG 2343 (2548)
Q Consensus 2274 VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp--------dGslLATgG~SS~D 2343 (2548)
+....+.+++.++++|+.|++|++||++++...... ....+.+|...|.+ |+| ++++||+++ .|
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~---~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s---~D 165 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQH---VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG---DD 165 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEE---EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE---TT
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCccceee---eecccCCCCCceEEEEEccccccccCCCCCEEEEEE---CC
Confidence 333444456778999999999999999887543221 22347899999975 665 789999997 99
Q ss_pred CeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCc
Q 000054 2344 INVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSI 2423 (2548)
Q Consensus 2344 GtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~ 2423 (2548)
++|+|||++. ..++..+.+|.+.|.+++|+|++ +.+|++|+.||+|++||++ +++..............
T Consensus 166 ~tv~~Wd~~~--~~~~~~~~~~~~~v~~v~~~p~~------~~~l~~~~~d~~v~~wd~~---t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 166 CTLIIWRLTD--EGPILAGYPLSSPGISVQFRPSN------PNQLIVGERNGNIRIFDWT---LNLSAEENSQTELVKNP 234 (393)
T ss_dssp SEEEEEEEET--TEEEEEEEECSSCEEEEEEETTE------EEEEEEEETTSEEEEEETT---CCC----------CSCC
T ss_pred CeEEEEECCC--CceeeeecCCCCCcEEEEECCCC------CceEEecCCCCEEEEEECC---CCcccccccccCCcccc
Confidence 9999999975 55677778899999999999984 5689999999999999964 34433322100000000
Q ss_pred cccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEe-CCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccc--
Q 000054 2424 NTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTV-PNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHT-- 2500 (2548)
Q Consensus 2424 ~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafS-PdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hs-- 2500 (2548)
..++.+... ... -....+|...|.++.|+ |+++.+++++.|+++++||+.+++....+.. |....
T Consensus 235 ----~~~s~~~~~------~~~-~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~-~~~~~~~ 302 (393)
T 4gq1_A 235 ----WLLTLNTLP------LVN-TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD-STMKLGP 302 (393)
T ss_dssp ----CSEEEESGG------GC-------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------
T ss_pred ----eEEeccccc------cee-eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee-ecCcccc
Confidence 000000000 000 00125789999999987 7999999999999999999998877665521 11100
Q ss_pred -cccCccc---CCCCceeecEEEEEEcCC--e--EEEEECCCcEEEEECCCCcc
Q 000054 2501 -FLQPSSR---GFGGVVRAGVTDIQVVSR--G--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2501 -fl~~tl~---GH~~~V~a~VtsLafSPd--G--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
.+.+..+ .+... ....++|. + +++|+.||+|++||+.++..
T Consensus 303 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~ 351 (393)
T 4gq1_A 303 KNLLPNVQGISLFPSL-----LGACPHPRYMDYFATAHSQHGLIQLINTYEKDS 351 (393)
T ss_dssp -CCSCSEEEECSSCCS-----SCCEECSSCTTEEEEEETTTTEEEEEETTCTTC
T ss_pred EEEccccccccccCcc-----eeEEEccCCCCEEEEEECCCCEEEEEECCCCcE
Confidence 0011111 11111 12245543 3 56788899999999988753
No 122
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.8e-18 Score=234.28 Aligned_cols=212 Identities=21% Similarity=0.289 Sum_probs=166.8
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCC--CCEEEEEeccCCC
Q 000054 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS--GSVIAAAGHSSNG 2343 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd--GslLATgG~SS~D 2343 (2548)
.+|.+.|++++|+|+++++++|+.||+|++||+..+... ....+.+|...|.+ |+++ ++++++|+ .|
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~------~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s---~D 76 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------LIDTLTGHEGPVWRVDWAHPKFGTILASCS---YD 76 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE------EEEEECCCSSCEEEEEECCTTSCSEEEEEE---TT
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc------cceeccCCcCceEEEEecCCCCCCEEEEEe---CC
Confidence 347799999999999999999999999999999844211 22457789988875 7777 89999997 89
Q ss_pred CeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCc
Q 000054 2344 INVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSI 2423 (2548)
Q Consensus 2344 GtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~ 2423 (2548)
|.|++||+..+....+..+.+|.+.|++++|+|+. .+..+++|+.||.|++||++. +......
T Consensus 77 g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~-----~~~~l~sgs~dg~I~vwdl~~---~~~~~~~--------- 139 (753)
T 3jro_A 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-----YGPLLLVASSDGKVSVVEFKE---NGTTSPI--------- 139 (753)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-----GCSEEEEEETTSEEEEEECCS---SSCCCCE---------
T ss_pred CeEEEEECCCCcccccccccCCCCCeEEEEECCCC-----CCCEEEEEeCCCcEEEEEeec---CCCccee---------
Confidence 99999999863223677888999999999999872 146999999999999999653 2111110
Q ss_pred cccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC-------------CCCEEEEEeCCCcEEEEECCCCcEEE
Q 000054 2424 NTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP-------------NTSLFLTGSKDGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2424 ~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP-------------dG~~LaSGS~DGtIrIWDl~Tgell~ 2490 (2548)
...+|...|.+++|+| ++.++++|+.||.|++||++++....
T Consensus 140 -------------------------~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~ 194 (753)
T 3jro_A 140 -------------------------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194 (753)
T ss_dssp -------------------------EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE
T ss_pred -------------------------EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc
Confidence 1157899999999999 58999999999999999998774322
Q ss_pred EecccccccccccCcccCCCCceeecEEEEEEcCC---e--EEEEECCCcEEEEECCCC
Q 000054 2491 HWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR---G--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2491 tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd---G--LaSGS~DGtIrIWDL~sg 2544 (2548)
... ..+.+|.+. |++++|+|+ + +++|+.||+|++||+.++
T Consensus 195 ~~~----------~~~~~h~~~----V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 195 VLE----------STLEGHSDW----VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp EEE----------EEECCCSSC----EEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred eee----------eeecCCCCc----EEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 110 113677754 577799999 7 899999999999999875
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.79 E-value=3.9e-17 Score=200.47 Aligned_cols=233 Identities=9% Similarity=0.043 Sum_probs=176.2
Q ss_pred EEEEEEcCCCCEE-EEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFF-LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~L-ASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWD 2299 (2548)
+.+++|+|+|+++ ++++.|+.|++||..+++.+..+.. ...+.+++|+|++++++.+ +.|+.|++||
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-----------~~~v~~~~~spdg~~l~~~~~~~~~v~v~d 102 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-----------GSSPQGVAVSPDGKQVYVTNMASSTLSVID 102 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-----------SSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-----------CCCccceEECCCCCEEEEEECCCCEEEEEE
Confidence 5899999999977 5777999999999999988877642 1479999999999988654 5679999999
Q ss_pred cCCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
+.+++.... +..+.. ...+++|+++.++.++ +.|+.|++||+.+ ++.+..+..| ..+.+++|+|+
T Consensus 103 ~~~~~~~~~--------~~~~~~~~~~~~s~dg~~l~~~~--~~~~~v~~~d~~~--~~~~~~~~~~-~~~~~~~~~~d- 168 (391)
T 1l0q_A 103 TTSNTVAGT--------VKTGKSPLGLALSPDGKKLYVTN--NGDKTVSVINTVT--KAVINTVSVG-RSPKGIAVTPD- 168 (391)
T ss_dssp TTTTEEEEE--------EECSSSEEEEEECTTSSEEEEEE--TTTTEEEEEETTT--TEEEEEEECC-SSEEEEEECTT-
T ss_pred CCCCeEEEE--------EeCCCCcceEEECCCCCEEEEEe--CCCCEEEEEECCC--CcEEEEEecC-CCcceEEECCC-
Confidence 998754322 222322 1235899999875444 3799999999976 5566666654 56799999998
Q ss_pred CCCCCCCCEE-EEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccC---CCCCceEEEcccC
Q 000054 2379 LGSGSVSPLI-VTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKP---GDQNGMLWYIPKA 2452 (2548)
Q Consensus 2379 lg~gs~g~lL-VSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s---~D~sv~Iwdi~~g 2452 (2548)
++.+ ++++.|+.|++||+ .+++.+..+.. ......++++|+|+. ++. .++.+++|+...+
T Consensus 169 ------g~~l~~~~~~~~~v~~~d~---~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 169 ------GTKVYVANFDSMSISVIDT---VTNSVIDTVKV-----EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp ------SSEEEEEETTTTEEEEEET---TTTEEEEEEEC-----SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred ------CCEEEEEeCCCCEEEEEEC---CCCeEEEEEec-----CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 5555 78889999999994 45666655421 123456789999986 333 5788999986432
Q ss_pred -------CCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCcEEEEec
Q 000054 2453 -------HLGSVTRISTVPNTSLF-LTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2453 -------H~~~VtsLafSPdG~~L-aSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
....+.+++|+|+++++ ++++.|+.|++||+.+++.+.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 23457899999999877 677889999999999999998874
No 124
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.78 E-value=7.6e-19 Score=227.44 Aligned_cols=199 Identities=12% Similarity=0.102 Sum_probs=143.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+|+|.+||+++.||.|++||... .+..+. |. .......|.+++|+|||++|++|+.||+|++||+.
T Consensus 88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~----~~--~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD----SK--GNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC----CS--SCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc----CC--CccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 79999999999999999999999999544 333332 21 00012469999999999999999999999999998
Q ss_pred CCcccccccCccceec----cCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCC-cceee-eccCCCeEEEE
Q 000054 2302 VGGRSNVRPMESCLCF----SSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTS-SRASI-TCHEGGARSIS 2373 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~----~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k-~v~sl-~gHs~~VtSLa 2373 (2548)
++..... .+-...++ .+|...|.+ |+|+| +++++ .|++|++||+...... ..+.+ .+|...|.+++
T Consensus 160 ~~~l~~~-~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass---~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 160 KNSENTP-EFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL---SNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp CCTTTCC-CCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE---TTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred CCccccc-cceeeeeeecccccccccEEEEEEcCCc--EEEEe---CCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 7642110 00012233 677888874 89999 56655 7999999999763211 23456 47889999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
|+ +. .|++++ +|+|++||+ .+++..... .+|
T Consensus 234 Fs-g~--------~LASa~-~~tIkLWd~---~~~~~~~~~------------------------------------~gh 264 (588)
T 2j04_A 234 IV-DY--------KVVLTC-PGYVHKIDL---KNYSISSLK------------------------------------TGS 264 (588)
T ss_dssp EE-TT--------EEEEEC-SSEEEEEET---TTTEEEEEE------------------------------------CSC
T ss_pred EE-CC--------EEEEEe-CCeEEEEEC---CCCeEEEEE------------------------------------cCC
Confidence 98 42 888887 699999994 444442222 357
Q ss_pred CCCEEEEEE--eCCCCEEEEEeCCCcEEEEECC
Q 000054 2454 LGSVTRIST--VPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2454 ~~~VtsLaf--SPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.+.|..++| +|++..+++++.||+ ++|...
T Consensus 265 ~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 265 LENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 777777777 777777777777777 777765
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.78 E-value=4.5e-18 Score=209.10 Aligned_cols=194 Identities=14% Similarity=0.170 Sum_probs=139.1
Q ss_pred EEEEEEcCC----CCEEEEEEC--------------------CCeEEEEEcC-CCceeEEEeccCCCCCCCCCCCCCeEE
Q 000054 2222 TRAFSSHPL----RPFFLVGSS--------------------NTHIYLWEFG-KDKATATYGVLPAANVPPPYALASISA 2276 (2548)
Q Consensus 2222 V~~VsfSPd----G~~LASGS~--------------------DGsVrLWDl~-tg~~l~t~~~l~ghs~~~~~H~~~Vts 2276 (2548)
+++++++|+ ++++++++. |+.|++|++. +|+.+..+.. |...++.
T Consensus 114 v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~----------~~~~v~~ 183 (356)
T 2w18_A 114 IRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFL----------MPPEETI 183 (356)
T ss_dssp EEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEE----------CCCSSCE
T ss_pred eEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeecc----------CCCceee
Confidence 566666666 666665543 7778888874 4666555543 4477888
Q ss_pred EEEcc---CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCc---ccEE--EEcCCCCEEEEEec---------
Q 000054 2277 LQFDH---YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHA---MDVS--YITSSGSVIAAAGH--------- 2339 (2548)
Q Consensus 2277 VaFSP---dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~---~~V~--afSpdGslLATgG~--------- 2339 (2548)
++|++ ++.+|++|+.|++|++||+++|+.+.. +.+|. ..+. +|+|+|.+++++..
T Consensus 184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~t--------L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS 255 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKK--------MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL 255 (356)
T ss_dssp EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEE--------EECCC---CCCEEEEEEETTEEEEEEC----------
T ss_pred EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEE--------EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec
Confidence 88888 779999999999999999999975432 33332 2343 48899987743210
Q ss_pred cCCCCeEEEEECCCCCCCcceee-----eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000054 2340 SSNGINVVVWDTLAPPTSSRASI-----TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2340 SS~DGtVrIWDl~t~~~k~v~sl-----~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
.+.|++|++||..+ ++.+..+ .+|.+.+.+..++ +.++++|+.||+|+||| +.+++++.++
T Consensus 256 Gs~D~tIklWd~~t--gk~l~v~~~~~p~Gh~~~~lsg~~s---------g~~lASgS~DgTIkIWD---l~tGk~l~tL 321 (356)
T 2w18_A 256 RSPVFQLIVINPKT--TLSVGVMLYCLPPGQAGRFLEGDVK---------DHCAAAILTSGTIAIWD---LLLGQCTALL 321 (356)
T ss_dssp --CCEEEEEEETTT--TEEEEEEEECCCTTCCCCEEEEEEE---------TTEEEEEETTSCEEEEE---TTTCSEEEEE
T ss_pred cCCCcEEEEEECCC--CEEEEEEEeeccCCCcceeEccccC---------CCEEEEEcCCCcEEEEE---CCCCcEEEEe
Confidence 04899999999976 5554443 3676665544443 34899999999999999 6788888887
Q ss_pred cCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE-EEEEeCCCCEEEEEeCCCcEEEEEC
Q 000054 2415 HSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT-RISTVPNTSLFLTGSKDGDVKLWDA 2483 (2548)
Q Consensus 2415 ~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt-sLafSPdG~~LaSGS~DGtIrIWDl 2483 (2548)
++|...+. +++|+|+|++|++|+.|++|+|||+
T Consensus 322 ------------------------------------~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 322 ------------------------------------PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ------------------------------------CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ------------------------------------cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 67876554 6899999999999999999999995
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.74 E-value=2.1e-16 Score=196.69 Aligned_cols=232 Identities=11% Similarity=0.059 Sum_probs=176.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
..+.+++|+|++..+++++.|+.|++||+.+++.....+ ...+.+|...|. +++++++++++++ .|+.|++|
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~s~~---~d~~v~~~ 196 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSP---PEKYKKKLGFVETISIPEHNELWVSQM---QANAVHVF 196 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECC---CHHHHTTCCEEEEEEEGGGTEEEEEEG---GGTEEEEE
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecC---cccccccCCceeEEEEcCCCEEEEEEC---CCCEEEEE
Confidence 456789999988888888889999999999886543211 113457777775 3788999999885 79999999
Q ss_pred ECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEE-EEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000054 2350 DTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLI-VTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lL-VSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
|++. .+.+..+..|...+.+++|+|+ +..+ ++++.|+.|++||+ .+++.+..+.. ......+
T Consensus 197 d~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~i~~~d~---~~~~~~~~~~~-----~~~~~~~ 259 (433)
T 3bws_A 197 DLKT--LAYKATVDLTGKWSKILLYDPI-------RDLVYCSNWISEDISVIDR---KTKLEIRKTDK-----IGLPRGL 259 (433)
T ss_dssp ETTT--CCEEEEEECSSSSEEEEEEETT-------TTEEEEEETTTTEEEEEET---TTTEEEEECCC-----CSEEEEE
T ss_pred ECCC--ceEEEEEcCCCCCeeEEEEcCC-------CCEEEEEecCCCcEEEEEC---CCCcEEEEecC-----CCCceEE
Confidence 9976 5677888889999999999998 5555 56668999999994 45666655421 1225677
Q ss_pred ccCCCCCC--ccC--------CCCCceEEEccc-------CCCCCEEEEEEeCCCCE-EEEEeCCCcEEEEECCCCcEEE
Q 000054 2429 ADAQTGSG--SKP--------GDQNGMLWYIPK-------AHLGSVTRISTVPNTSL-FLTGSKDGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2429 afSpdGk~--v~s--------~D~sv~Iwdi~~-------gH~~~VtsLafSPdG~~-LaSGS~DGtIrIWDl~Tgell~ 2490 (2548)
+++|+|+. ++. .++.+++|+... .|...+.+++|+|+++. +++++.|+.|++||+.+++.+.
T Consensus 260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~ 339 (433)
T 3bws_A 260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK 339 (433)
T ss_dssp EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE
Confidence 89999976 222 367888998643 35668899999999975 5667889999999999998887
Q ss_pred EecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEEC---------------CCcEEEEECCCCc
Q 000054 2491 HWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG---------------DGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2491 tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~---------------DGtIrIWDL~sg~ 2545 (2548)
.++ +. ..+.+++|+|+| +++++. ||.|++||+.++.
T Consensus 340 ~~~---------------~~----~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 340 SIP---------------VF----DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEE---------------CS----SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred Eec---------------CC----CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 662 22 235678999999 666655 5799999998764
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.68 E-value=2.2e-15 Score=197.32 Aligned_cols=263 Identities=11% Similarity=0.056 Sum_probs=192.9
Q ss_pred EcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc--CCCc
Q 000054 2227 SHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL--EVGG 2304 (2548)
Q Consensus 2227 fSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl--~tgk 2304 (2548)
++|++.++++++.|++|.+||..+++.+.++.. + ..+..++|+|+|+++++++.|++|++||+ .+++
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~---------g--~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT---------G--YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 213 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC---------S--TTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEec---------C--cccceEEECCCCCEEEEECCCCeEEEEECcCCCCc
Confidence 568888999999999999999999999888752 1 23889999999999999999999999999 6654
Q ss_pred ccccccCccceeccCCcc-cEEEEcC----CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec----------cCC-C
Q 000054 2305 RSNVRPMESCLCFSSHAM-DVSYITS----SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC----------HEG-G 2368 (2548)
Q Consensus 2305 ~i~i~p~~s~~t~~gH~~-~V~afSp----dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g----------Hs~-~ 2368 (2548)
... .+..+.. .-.+++| +|+++++++. .+++|.+||..+ .+++..+.. |.+ .
T Consensus 214 ~~~--------~i~~g~~p~~va~sp~~~~dg~~l~v~~~--~~~~v~v~D~~t--~~~~~~i~~~g~~~~~~~~~~~~~ 281 (543)
T 1nir_A 214 KVA--------EIKIGIEARSVESSKFKGYEDRYTIAGAY--WPPQFAIMDGET--LEPKQIVSTRGMTVDTQTYHPEPR 281 (543)
T ss_dssp EEE--------EEECCSEEEEEEECCSTTCTTTEEEEEEE--ESSEEEEEETTT--CCEEEEEECCEECSSSCCEESCCC
T ss_pred EEE--------EEecCCCcceEEeCCCcCCCCCEEEEEEc--cCCeEEEEeccc--cccceeecccCcccCccccccCCc
Confidence 322 1222222 2225899 9999998862 589999999876 666666654 333 7
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceee--eecCCCCCCCccccccccCCCCCC--c-cCCCCC
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKK--HKHSDRGGSSINTCAHADAQTGSG--S-KPGDQN 2443 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~--tl~~~~~~s~~~~~~vafSpdGk~--v-~s~D~s 2443 (2548)
+.++.++|++ ..++++...+|.|.+||+. +++.+. .+. .......+.|+|+|++ + ...+++
T Consensus 282 v~~i~~s~~~------~~~~vs~~~~g~i~vvd~~---~~~~l~~~~i~-----~~~~~~~~~~spdg~~l~va~~~~~~ 347 (543)
T 1nir_A 282 VAAIIASHEH------PEFIVNVKETGKVLLVNYK---DIDNLTVTSIG-----AAPFLHDGGWDSSHRYFMTAANNSNK 347 (543)
T ss_dssp EEEEEECSSS------SEEEEEETTTTEEEEEECT---TSSSCEEEEEE-----CCSSCCCEEECTTSCEEEEEEGGGTE
T ss_pred eEEEEECCCC------CEEEEEECCCCeEEEEEec---CCCcceeEEec-----cCcCccCceECCCCCEEEEEecCCCe
Confidence 8999999984 5678888899999999954 333332 221 1123446789999996 2 345778
Q ss_pred ceEEEccc------------CCCCCEEEEEEeCC-CCEEEEEe-CCCcEEEEECCC-------CcEEEEecccccccccc
Q 000054 2444 GMLWYIPK------------AHLGSVTRISTVPN-TSLFLTGS-KDGDVKLWDAKA-------AQLVYHWSKLHERHTFL 2502 (2548)
Q Consensus 2444 v~Iwdi~~------------gH~~~VtsLafSPd-G~~LaSGS-~DGtIrIWDl~T-------gell~tL~~~Hs~hsfl 2502 (2548)
+.+||... .|.+....+ ++|+ +.++++++ .|++|.+||+.+ +++++++
T Consensus 348 v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l---------- 416 (543)
T 1nir_A 348 VAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL---------- 416 (543)
T ss_dssp EEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE----------
T ss_pred EEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE----------
Confidence 99998532 154444333 5787 67777776 689999999998 8888877
Q ss_pred cCcccCCCCceeecEEEEEEcCCe--EEEEE-------CCCcEEEEECCCCc
Q 000054 2503 QPSSRGFGGVVRAGVTDIQVVSRG--FLSCG-------GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2503 ~~tl~GH~~~V~a~VtsLafSPdG--LaSGS-------~DGtIrIWDL~sg~ 2545 (2548)
.+|++.+ ..++++|+| |++++ .+++|.+||+.++.
T Consensus 417 ----~~~g~~~----~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 417 ----QGQGGGS----LFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp ----ECSCSCC----CCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred ----EcCCCCc----eEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 4555332 345899999 66665 27899999998764
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.67 E-value=9.8e-15 Score=184.19 Aligned_cols=223 Identities=11% Similarity=0.078 Sum_probs=162.8
Q ss_pred CCEEEEEECC------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC---cEEEEEcC
Q 000054 2231 RPFFLVGSSN------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG---TVCTWQLE 2301 (2548)
Q Consensus 2231 G~~LASGS~D------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG---tVrVWDl~ 2301 (2548)
+..++.++.+ +.|++||.+.+. ...+.. |.+.|.+++|+|+|++|++++.|+ .|++||++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~----------~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~ 211 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHR----------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA 211 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEE----------ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeC----------CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC
Confidence 5556655543 799999997543 444432 447899999999999999999885 99999999
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCC--eEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DG--tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+++... +..|...+. +|+|+|+.|+..+ +.++ .|++||+.+ ++ ...+..|...+.+++|+|+
T Consensus 212 tg~~~~---------l~~~~~~~~~~~~spdg~~la~~~--~~~g~~~i~~~d~~~--~~-~~~l~~~~~~~~~~~~spd 277 (415)
T 2hqs_A 212 NGAVRQ---------VASFPRHNGAPAFSPDGSKLAFAL--SKTGSLNLYVMDLAS--GQ-IRQVTDGRSNNTEPTWFPD 277 (415)
T ss_dssp TCCEEE---------EECCSSCEEEEEECTTSSEEEEEE--CTTSSCEEEEEETTT--CC-EEECCCCSSCEEEEEECTT
T ss_pred CCcEEE---------eecCCCcccCEEEcCCCCEEEEEE--ecCCCceEEEEECCC--CC-EEeCcCCCCcccceEECCC
Confidence 875422 334444554 4999999888443 2444 599999975 33 3567788899999999999
Q ss_pred CCCCCCCCCEEEEEeC-CC--cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2378 DLGSGSVSPLIVTGGK-GG--DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~-DG--tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
++.|++++. +| .|.+||+ .+++.. .+ ..|.
T Consensus 278 -------g~~l~~~s~~~g~~~i~~~d~---~~~~~~-~l------------------------------------~~~~ 310 (415)
T 2hqs_A 278 -------SQNLAFTSDQAGRPQVYKVNI---NGGAPQ-RI------------------------------------TWEG 310 (415)
T ss_dssp -------SSEEEEEECTTSSCEEEEEET---TSSCCE-EC------------------------------------CCSS
T ss_pred -------CCEEEEEECCCCCcEEEEEEC---CCCCEE-EE------------------------------------ecCC
Confidence 778887775 55 5666673 344322 21 3356
Q ss_pred CCEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEE
Q 000054 2455 GSVTRISTVPNTSLFLTGSKD---GDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS 2529 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~D---GtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS 2529 (2548)
..+.+++|+|+|++|++++.+ +.|++||+.+++... + ..|. .+.+++|+|+| |++
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l--------------~~~~-----~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-L--------------SSTF-----LDETPSLAPNGTMVIY 370 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-C--------------CCSS-----SCEEEEECTTSSEEEE
T ss_pred CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-e--------------cCCC-----CcCCeEEcCCCCEEEE
Confidence 678899999999999988764 589999999988743 3 2332 24667999999 777
Q ss_pred EECCC---cEEEEECCCCc
Q 000054 2530 CGGDG---SVKLIQLEDYQ 2545 (2548)
Q Consensus 2530 GS~DG---tIrIWDL~sg~ 2545 (2548)
++.|+ .|++||++++.
T Consensus 371 ~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 371 SSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEETTEEEEEEEETTSCC
T ss_pred EEcCCCccEEEEEECCCCc
Confidence 77776 79999998764
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.65 E-value=1.2e-14 Score=190.19 Aligned_cols=286 Identities=11% Similarity=0.025 Sum_probs=196.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEc--CCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc----CCCEEEEEeC-CCc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEF--GKDKATATYGVLPAANVPPPYALASISALQFDH----YGHRFASAAL-DGT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl--~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP----dG~~LaSGS~-DGt 2294 (2548)
+..++|+|+|++|++++.|++|++||+ .+++.+.++.. ...+..++|+| +|+++++++. +++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-----------g~~p~~va~sp~~~~dg~~l~v~~~~~~~ 249 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-----------GIEARSVESSKFKGYEDRYTIAGAYWPPQ 249 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-----------CSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-----------CCCcceEEeCCCcCCCCCEEEEEEccCCe
Confidence 468889999999999999999999999 78887777642 25689999999 9999999885 899
Q ss_pred EEEEEcCCCcccccccCccceeccC---Ccc-cEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce--eeeccC
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSS---HAM-DVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA--SITCHE 2366 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~g---H~~-~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~--sl~gHs 2366 (2548)
|.+||..+++.+...+... ..... |.. .+. .+++++..++++. ..++.|.+||.... +.+. .+ .+.
T Consensus 250 v~v~D~~t~~~~~~i~~~g-~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~--~~~g~i~vvd~~~~--~~l~~~~i-~~~ 323 (543)
T 1nir_A 250 FAIMDGETLEPKQIVSTRG-MTVDTQTYHPEPRVAAIIASHEHPEFIVNV--KETGKVLLVNYKDI--DNLTVTSI-GAA 323 (543)
T ss_dssp EEEEETTTCCEEEEEECCE-ECSSSCCEESCCCEEEEEECSSSSEEEEEE--TTTTEEEEEECTTS--SSCEEEEE-ECC
T ss_pred EEEEeccccccceeecccC-cccCccccccCCceEEEEECCCCCEEEEEE--CCCCeEEEEEecCC--CcceeEEe-ccC
Confidence 9999998876544322100 00000 222 343 3788777666554 48999999999763 3222 33 456
Q ss_pred CCeEEEEEccCCCCCCCCCCEEE-EEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC-CCC-cc--CCC
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIV-TGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT-GSG-SK--PGD 2441 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLV-SGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd-Gk~-v~--s~D 2441 (2548)
..+..+.|+|+ +++++ ++..+++|.+|| ..+++++..+...... ........++|+ |.. +. ..+
T Consensus 324 ~~~~~~~~spd-------g~~l~va~~~~~~v~v~D---~~tg~l~~~i~~g~~p-h~g~g~~~~~p~~g~~~~s~~~~d 392 (543)
T 1nir_A 324 PFLHDGGWDSS-------HRYFMTAANNSNKVAVID---SKDRRLSALVDVGKTP-HPGRGANFVHPKYGPVWSTSHLGD 392 (543)
T ss_dssp SSCCCEEECTT-------SCEEEEEEGGGTEEEEEE---TTTTEEEEEEECSSSB-CCTTCEEEEETTTEEEEEEEBSSS
T ss_pred cCccCceECCC-------CCEEEEEecCCCeEEEEE---CCCCeEEEeeccCCCC-CCCCCcccCCCCCccEEEeccCCC
Confidence 77889999998 67655 555689999999 6678887766321110 000111123566 444 22 256
Q ss_pred CCceEEEccc---------------CCCCCEEEEEEeCCCCEEEEEe-------CCCcEEEEECCCCcEE-EEeccc-cc
Q 000054 2442 QNGMLWYIPK---------------AHLGSVTRISTVPNTSLFLTGS-------KDGDVKLWDAKAAQLV-YHWSKL-HE 2497 (2548)
Q Consensus 2442 ~sv~Iwdi~~---------------gH~~~VtsLafSPdG~~LaSGS-------~DGtIrIWDl~Tgell-~tL~~~-Hs 2497 (2548)
+++.+|++.. +|.+.+..++++|+|++|++++ .+++|.|||+.+++.. ..++-. ..
T Consensus 393 ~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~ 472 (543)
T 1nir_A 393 GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWA 472 (543)
T ss_dssp SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHH
T ss_pred ceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhc
Confidence 8889998643 3566778899999999999987 2789999999998876 433100 00
Q ss_pred ccccccCcccCCCCceeecEEEEEEcCCe--EE-EEE----CCCcEEEEECCCCcc
Q 000054 2498 RHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL-SCG----GDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La-SGS----~DGtIrIWDL~sg~l 2546 (2548)
+ +..++. .+..++|+|+| ++ +.. .|++|.|||..++.+
T Consensus 473 ~-------~~~~~~----~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 473 D-------LGEGAK----RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp C-------CCSSCC----EEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred c-------cCCCCC----ceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 0 122332 35677999999 43 432 489999999998754
No 130
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.65 E-value=3.1e-14 Score=169.51 Aligned_cols=263 Identities=9% Similarity=0.029 Sum_probs=180.2
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCC-CeEEEEEccCCCEE-EEEeCCCcEEEEEcCCCcccccc
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALA-SISALQFDHYGHRF-ASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~-~VtsVaFSPdG~~L-aSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
+++++++.++.|++||..+++.+..+.. . +.. .+..++|+|+|+++ +++..++.|.+||+.+++.....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~--------~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 72 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITI-A--------DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC-T--------TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEc-C--------CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeE
Confidence 4788999999999999999988877642 1 101 47889999999866 45566789999999887643221
Q ss_pred cCccceeccCCcccEEEEcCCCCEEEEEeccC---------CCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000054 2310 PMESCLCFSSHAMDVSYITSSGSVIAAAGHSS---------NGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2310 p~~s~~t~~gH~~~V~afSpdGslLATgG~SS---------~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
+....... +....-..++|+|+.++++.... .++.|.+||+.+ .+.+..+.. ...+.+++|+|+
T Consensus 73 ~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~-~~~~~~~~~s~d--- 145 (337)
T 1pby_B 73 DLSTPEER-VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET--LSRRKAFEA-PRQITMLAWARD--- 145 (337)
T ss_dssp ECCBTTEE-EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT--TEEEEEEEC-CSSCCCEEECTT---
T ss_pred EcCCcccc-cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC--CcEEEEEeC-CCCcceeEECCC---
Confidence 11000000 00112235899999888873100 268999999975 455555543 456788999998
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCC---CC---------------
Q 000054 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPG---DQ--------------- 2442 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~---D~--------------- 2442 (2548)
++.++++ ++.|.+|| ..+++....+..... .....++|+|+.+... ++
T Consensus 146 ----g~~l~~~--~~~i~~~d---~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 211 (337)
T 1pby_B 146 ----GSKLYGL--GRDLHVMD---PEAGTLVEDKPIQSW-----EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP 211 (337)
T ss_dssp ----SSCEEEE--SSSEEEEE---TTTTEEEEEECSTTT-----TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred ----CCEEEEe--CCeEEEEE---CCCCcEeeeeecccc-----CCCceeCCCccEEeeeccCCCceeeeeecccccccc
Confidence 6666666 68999999 556776655522110 1234778888763211 11
Q ss_pred --------CceEEEccc---------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCc
Q 000054 2443 --------NGMLWYIPK---------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPS 2505 (2548)
Q Consensus 2443 --------sv~Iwdi~~---------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~t 2505 (2548)
.+.+|+... .+...+.+++|+|+|++++++ ++.|.+||+.+++.+..+.
T Consensus 212 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~------------ 277 (337)
T 1pby_B 212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP------------ 277 (337)
T ss_dssp TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE------------
T ss_pred ccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec------------
Confidence 245666432 344567889999999999988 7999999999999887662
Q ss_pred ccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2506 SRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2506 l~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.++ .+.+++|+|+| +++++.|+.|++||+.++.
T Consensus 278 -~~~------~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 278 -LPH------SYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp -CSS------CCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred -CCC------ceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 111 13567999999 7778889999999998764
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.64 E-value=3.4e-14 Score=170.34 Aligned_cols=274 Identities=9% Similarity=-0.013 Sum_probs=180.0
Q ss_pred EcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CCcEEEEEcCCCc
Q 000054 2227 SHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTWQLEVGG 2304 (2548)
Q Consensus 2227 fSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DGtVrVWDl~tgk 2304 (2548)
|.+++. .+++++.++.|++||..+++....+.. +...+ .++|+|+|+++++++. ++.|.+||+.+++
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~----------~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~ 73 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL----------GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP 73 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC----------CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc----------cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 345444 466788999999999999988777642 12456 9999999997776665 8999999998875
Q ss_pred c-cccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCC-C--eEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2305 R-SNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNG-I--NVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2305 ~-i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~D-G--tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
. .. ....+.... .+++|+|++++++. .+ + .|.+||+.. .+.+..+.. .....+++|+|++
T Consensus 74 ~~~~--------~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~~~~i~v~d~~~--~~~~~~~~~-~~~~~~~~~spdg 139 (331)
T 3u4y_A 74 PKVV--------AIQEGQSSMADVDITPDDQFAVTVT---GLNHPFNMQSYSFLK--NKFISTIPI-PYDAVGIAISPNG 139 (331)
T ss_dssp CEEE--------EEEECSSCCCCEEECTTSSEEEECC---CSSSSCEEEEEETTT--TEEEEEEEC-CTTEEEEEECTTS
T ss_pred eeEE--------ecccCCCCccceEECCCCCEEEEec---CCCCcccEEEEECCC--CCeEEEEEC-CCCccceEECCCC
Confidence 3 11 122222222 35899999988542 33 3 899999976 455555543 4567999999993
Q ss_pred CCCCCCCCEEEEEeCCCc-EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC---ccCCCCCceEEEcccCC-
Q 000054 2379 LGSGSVSPLIVTGGKGGD-VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG---SKPGDQNGMLWYIPKAH- 2453 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGt-VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~---v~s~D~sv~Iwdi~~gH- 2453 (2548)
..+++++..++. |.+||+.. .+...... ............+.++|+|+. ....++.+.+|++..+.
T Consensus 140 ------~~l~~~~~~~~~~i~~~~~~~--~g~~~~~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 140 ------NGLILIDRSSANTVRRFKIDA--DGVLFDTG-QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ------SCEEEEEETTTTEEEEEEECT--TCCEEEEE-EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ------CEEEEEecCCCceEEEEEECC--CCcEeecC-CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 236666677788 99999642 22221110 000011122456789999985 33456788999864322
Q ss_pred ---------CCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCcE--EEEecccccccccccCcccCCCCceeecEEEEE
Q 000054 2454 ---------LGSVTRISTVPNTSLFLTGS-KDGDVKLWDAKAAQL--VYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2454 ---------~~~VtsLafSPdG~~LaSGS-~DGtIrIWDl~Tgel--l~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa 2521 (2548)
...+..++|+|+|++++.++ .++.|.+||+.+++. +..+... +..+.... ..+..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~ 279 (331)
T 3u4y_A 211 ITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG----------LLIDPRPL-FGANQMA 279 (331)
T ss_dssp CEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC----------CCCCCGGG-TTCCCEE
T ss_pred cceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc----------cccCCCCc-ccccceE
Confidence 24567899999999776665 578999999999887 4444210 00111111 1124569
Q ss_pred EcCCe--E-EEEECCCcEEEEECCCCc
Q 000054 2522 VVSRG--F-LSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2522 fSPdG--L-aSGS~DGtIrIWDL~sg~ 2545 (2548)
|+|+| | +++..++.|++||+.+..
T Consensus 280 ~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 280 LNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred ECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 99999 5 455667799999998764
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.64 E-value=1.7e-14 Score=172.20 Aligned_cols=260 Identities=8% Similarity=0.064 Sum_probs=168.7
Q ss_pred EEEEEECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-CcEEEEEcC--CCccccc
Q 000054 2233 FFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-GTVCTWQLE--VGGRSNV 2308 (2548)
Q Consensus 2233 ~LASGS~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-GtVrVWDl~--tgk~i~i 2308 (2548)
++++++.|+.|++||++. ++. ..+.... |...+.+++|+|+|+++++++.+ +.|.+|+++ ++.....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 77 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGAL-TLTQVVD--------VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA 77 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCE-EEEEEEE--------CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred EEEeCCCCCeEEEEEECCCCcE-EEeeeEe--------cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec
Confidence 344457899999999963 322 2221111 33678899999999999998887 999999997 4432111
Q ss_pred ccCccceeccCCc-ccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCC-CCcceeeeccCCCeEEEEEccCCCCCCCCCC
Q 000054 2309 RPMESCLCFSSHA-MDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPP-TSSRASITCHEGGARSISVFDNDLGSGSVSP 2386 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~-~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~-~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~ 2386 (2548)
..+..+. ..-.+++|+|+.+++++ ..++.|.+||+..+. .+.+..+.. ...+.+++|+|+ ++
T Consensus 78 ------~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~d-------g~ 141 (343)
T 1ri6_A 78 ------AESALPGSLTHISTDHQGQFVFVGS--YNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPD-------NR 141 (343)
T ss_dssp ------EEEECSSCCSEEEECTTSSEEEEEE--TTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTT-------SS
T ss_pred ------cccccCCCCcEEEEcCCCCEEEEEe--cCCCeEEEEECCCCccccccccccC-CCCceEEEECCC-------CC
Confidence 1122222 22235899999887776 358999999994210 223334433 346889999998 66
Q ss_pred EEEEEe-CCCcEEEEeCCcccc-Cceee----eecCCCCCCCccccccccCCCCCC--c-cCCCCCceEEEccc------
Q 000054 2387 LIVTGG-KGGDVGIHDFRYIAT-GKTKK----HKHSDRGGSSINTCAHADAQTGSG--S-KPGDQNGMLWYIPK------ 2451 (2548)
Q Consensus 2387 lLVSGS-~DGtVrLWDLR~l~T-Gk~l~----tl~~~~~~s~~~~~~vafSpdGk~--v-~s~D~sv~Iwdi~~------ 2451 (2548)
.+++++ .++.|++||+. + ++... ..... .......++++|+|+. + ...++.+.+|++..
T Consensus 142 ~l~~~~~~~~~v~~~d~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 142 TLWVPALKQDRICLFTVS---DDGHLVAQDPAEVTTV---EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp EEEEEEGGGTEEEEEEEC---TTSCEEEEEEEEEECS---TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred EEEEecCCCCEEEEEEec---CCCceeeecccccccC---CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 677666 89999999953 3 43321 11111 1123345789999985 2 33677889998621
Q ss_pred ----------CC--CCCEEEEEEeCCCCEEEEE-eCCCcEEEEECC--CC--cEEEEecccccccccccCcccCCCCcee
Q 000054 2452 ----------AH--LGSVTRISTVPNTSLFLTG-SKDGDVKLWDAK--AA--QLVYHWSKLHERHTFLQPSSRGFGGVVR 2514 (2548)
Q Consensus 2452 ----------gH--~~~VtsLafSPdG~~LaSG-S~DGtIrIWDl~--Tg--ell~tL~~~Hs~hsfl~~tl~GH~~~V~ 2514 (2548)
++ ...+..++|+|+|++|+.+ ..|+.|++||+. ++ +.+..+ ..+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~--------------~~~~~--- 278 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ--------------PTETQ--- 278 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE--------------ECSSS---
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee--------------cCCCc---
Confidence 11 2356689999999887754 579999999998 33 333333 22221
Q ss_pred ecEEEEEEcCCe--EEEEE-CCCcEEEEECC
Q 000054 2515 AGVTDIQVVSRG--FLSCG-GDGSVKLIQLE 2542 (2548)
Q Consensus 2515 a~VtsLafSPdG--LaSGS-~DGtIrIWDL~ 2542 (2548)
+.+++|+|+| +++++ .|+.|.+|+++
T Consensus 279 --~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 279 --PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp --CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred --cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 3456999999 66555 68999999554
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.62 E-value=2.6e-14 Score=165.75 Aligned_cols=230 Identities=13% Similarity=0.074 Sum_probs=160.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe--CCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA--LDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS--~DGtVrVW 2298 (2548)
+.+++|+|+|+++++++ ++.|++||+.+ ++....... .+...|.+++|+|+++++++++ .++.+.+|
T Consensus 44 v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~---------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG---------FATICNNDHGISPDGALYAISDKVEFGKSAIY 113 (297)
T ss_dssp CEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT---------TCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc---------cccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence 58899999999999976 78999999998 765544321 1236788999999999999998 44566776
Q ss_pred EcC--CCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2299 QLE--VGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2299 Dl~--tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
.++ ++... .+..+.. ....|+|+++.++.++ +.++.+++|++... ......+..|...+.++.|+
T Consensus 114 ~~~~~~~~~~---------~~~~~~~~~~~~~spdg~~l~~~~--~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~s 181 (297)
T 2ojh_A 114 LLPSTGGTPR---------LMTKNLPSYWHGWSPDGKSFTYCG--IRDQVFDIYSMDID-SGVETRLTHGEGRNDGPDYS 181 (297)
T ss_dssp EEETTCCCCE---------ECCSSSSEEEEEECTTSSEEEEEE--EETTEEEEEEEETT-TCCEEECCCSSSCEEEEEEC
T ss_pred EEECCCCceE---------EeecCCCccceEECCCCCEEEEEE--CCCCceEEEEEECC-CCcceEcccCCCccccceEC
Confidence 664 33211 1222222 1225999999887433 27899999997543 23445666788899999999
Q ss_pred cCCCCCCCCCCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2376 DNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
|+ ++.++.++ .++.+++|+++. .+.....+ ..|.
T Consensus 182 ~d-------g~~l~~~~~~~~~~~i~~~~~--~~~~~~~~------------------------------------~~~~ 216 (297)
T 2ojh_A 182 PD-------GRWIYFNSSRTGQMQIWRVRV--DGSSVERI------------------------------------TDSA 216 (297)
T ss_dssp TT-------SSEEEEEECTTSSCEEEEEET--TSSCEEEC------------------------------------CCCS
T ss_pred CC-------CCEEEEEecCCCCccEEEECC--CCCCcEEE------------------------------------ecCC
Confidence 98 66666655 699999999541 22233332 4566
Q ss_pred CCEEEEEEeCCCCEEEEEeCC-----------CcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEc
Q 000054 2455 GSVTRISTVPNTSLFLTGSKD-----------GDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVV 2523 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~D-----------GtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafS 2523 (2548)
..+.+++|+|+|++|++++.+ +.|.+||+.+++...... +.+|...+ .+++|+
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~------------~~~~~~~~----~~~~~s 280 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD------------LFGGQGTM----NSPNWS 280 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE------------EEESTTTS----CSCCBC
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec------------cCCCCccc----ccceEC
Confidence 788999999999999988876 569999999876543221 13454433 345899
Q ss_pred CCe--EEEEECCC
Q 000054 2524 SRG--FLSCGGDG 2534 (2548)
Q Consensus 2524 PdG--LaSGS~DG 2534 (2548)
|+| |++++.|.
T Consensus 281 pdg~~l~~~~~~~ 293 (297)
T 2ojh_A 281 PDGDEFAYVRYFP 293 (297)
T ss_dssp TTSSEEEEEEECC
T ss_pred CCCCEEEEEEecc
Confidence 999 66665543
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.61 E-value=1.2e-14 Score=194.39 Aligned_cols=245 Identities=10% Similarity=0.036 Sum_probs=166.6
Q ss_pred EEEEEEcCCCCEEEEEEC-CC-----eEEEEEcCCCceeEEEeccCCC-----------CCCCCCC---CCCeEEEEEcc
Q 000054 2222 TRAFSSHPLRPFFLVGSS-NT-----HIYLWEFGKDKATATYGVLPAA-----------NVPPPYA---LASISALQFDH 2281 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~-DG-----sVrLWDl~tg~~l~t~~~l~gh-----------s~~~~~H---~~~VtsVaFSP 2281 (2548)
+..++|+|||++|++++. |+ .|++||+.+++....+...... ..+...+ ...|.+++|+|
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 588999999999999988 88 8999999998876665321110 0000000 02378999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC---cccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCC
Q 000054 2282 YGHRFASAALDGTVCTWQLEVG---GRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPT 2356 (2548)
Q Consensus 2282 dG~~LaSGS~DGtVrVWDl~tg---k~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~ 2356 (2548)
||++|++++. +.|.+||+.++ ... .+..|...+. .|+|||+.|+++. ++.|++||+.. +
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~---------~l~~~~~~~~~~~~SPDG~~la~~~----~~~i~~~d~~~--g 182 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVR---------QLTHGEGFATDAKLSPKGGFVSFIR----GRNLWVIDLAS--G 182 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCC---------BCCCSSSCEEEEEECTTSSEEEEEE----TTEEEEEETTT--T
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEE---------EcccCCcccccccCCCCCCEEEEEe----CCcEEEEecCC--C
Confidence 9999999987 99999999877 321 1334444454 4999999999974 67999999975 3
Q ss_pred CcceeeeccCCC----------------eEEEEEccCCCCCCCCCCEEEEEeCCC-------------------------
Q 000054 2357 SSRASITCHEGG----------------ARSISVFDNDLGSGSVSPLIVTGGKGG------------------------- 2395 (2548)
Q Consensus 2357 k~v~sl~gHs~~----------------VtSLafsP~dlg~gs~g~lLVSGS~DG------------------------- 2395 (2548)
+.......+... +.++.|+|+ ++.|++++.|+
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD-------g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPD-------DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTT-------SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCC-------CCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 333333333322 478999999 77888877654
Q ss_pred --------cEEEEeCCcccc-CceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCC
Q 000054 2396 --------DVGIHDFRYIAT-GKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNT 2466 (2548)
Q Consensus 2396 --------tVrLWDLR~l~T-Gk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG 2466 (2548)
.|.+|| +.+ ++.... .....|...+..++| |||
T Consensus 256 ~g~~~~~~~l~~~d---~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~-pDg 297 (741)
T 2ecf_A 256 AGDANVQVKLGVIS---PAEQAQTQWI----------------------------------DLGKEQDIYLARVNW-RDP 297 (741)
T ss_dssp TTSCCCEEEEEEEC---SSTTCCCEEE----------------------------------CCCSCSSEEEEEEEE-EET
T ss_pred CCCCCCeeEEEEEE---CCCCCceEEe----------------------------------cCCCCcceEEEEEEe-CCC
Confidence 333444 122 221111 001247788999999 999
Q ss_pred CEEEEEeC-----CCcEEEEECCCCcEEEEecccccccccccCcccCCC-CceeecEEEEEEcCCe--EEEEECCCcEEE
Q 000054 2467 SLFLTGSK-----DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFG-GVVRAGVTDIQVVSRG--FLSCGGDGSVKL 2538 (2548)
Q Consensus 2467 ~~LaSGS~-----DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~-~~V~a~VtsLafSPdG--LaSGS~DGtIrI 2538 (2548)
++|++++. ++.|++||+.+++....+. .+. ..+ ..+.+++|+||| +++++.||.+++
T Consensus 298 ~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~~-~~~~~~~~spdg~~~~~~~~~g~~~l 362 (741)
T 2ecf_A 298 QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH--------------ETSPTWV-PLHNSLRFLDDGSILWSSERTGFQHL 362 (741)
T ss_dssp TEEEEEEEETTSSEEEEEEEETTTCCEEEEEE--------------EECSSCC-CCCSCCEECTTSCEEEEECTTSSCEE
T ss_pred CEEEEEEecccCCeEEEEEEECCCCceEEEEE--------------cCCCCcC-CcCCceEECCCCeEEEEecCCCccEE
Confidence 99987764 5689999999998876552 111 111 012345899999 678889998888
Q ss_pred EECC
Q 000054 2539 IQLE 2542 (2548)
Q Consensus 2539 WDL~ 2542 (2548)
|.++
T Consensus 363 ~~~~ 366 (741)
T 2ecf_A 363 YRID 366 (741)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8775
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.61 E-value=1.2e-13 Score=166.16 Aligned_cols=248 Identities=9% Similarity=0.036 Sum_probs=177.9
Q ss_pred EEEEEEcCCCCEEEEEEC-------CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE-EeCCC
Q 000054 2222 TRAFSSHPLRPFFLVGSS-------NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDG 2293 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~-------DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS-GS~DG 2293 (2548)
...++++|+|+++++++. ++.|.+||..+++.+..+.. ...+..++|+|+|+++++ +..++
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-----------~~~~~~~~~s~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-----------DLKPFGATINNTTQTLWFGNTVNS 111 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-----------SSCCCSEEEETTTTEEEEEETTTT
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-----------CCCcceEEECCCCCEEEEEecCCC
Confidence 478899999998887763 56899999999988877753 134678999999996555 45579
Q ss_pred cEEEEEcCCCcccccccCccceec-cCCc--ccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCF-SSHA--MDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~-~gH~--~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
.|.+||..+++.....+....... .... ..-..++|+|+.+++++.. .++.|.+||..+ .+.+..+..+...+.
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~~i~~~d~~~--~~~~~~~~~~~~~~~ 188 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG-KESVIWVVDGGN--IKLKTAIQNTGKMST 188 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-SSCEEEEEETTT--TEEEEEECCCCTTCC
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-CCceEEEEcCCC--CceEEEecCCCCccc
Confidence 999999998864332211000000 0000 1113589999987776422 578999999976 556666665666788
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
++.|+|+ ++.+++++.++.|.+|| ..+++.+..+... .
T Consensus 189 ~~~~s~d-------g~~l~~~~~~~~i~~~d---~~~~~~~~~~~~~--------------------------------~ 226 (353)
T 3vgz_A 189 GLALDSE-------GKRLYTTNADGELITID---TADNKILSRKKLL--------------------------------D 226 (353)
T ss_dssp CCEEETT-------TTEEEEECTTSEEEEEE---TTTTEEEEEEECC--------------------------------C
T ss_pred eEEECCC-------CCEEEEEcCCCeEEEEE---CCCCeEEEEEEcC--------------------------------C
Confidence 9999998 77899999999999999 5566665554100 0
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSK-DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--- 2526 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--- 2526 (2548)
.++...+.+++|+|+|++++.++. ++.|.+||..+++.+..++ .+.. ..++|+|+|
T Consensus 227 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------~~~~-------~~~~~s~dg~~l 286 (353)
T 3vgz_A 227 DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA-------------APES-------LAVLFNPARNEA 286 (353)
T ss_dssp SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE-------------CSSC-------CCEEEETTTTEE
T ss_pred CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE-------------cCCC-------ceEEECCCCCEE
Confidence 235667889999999997777665 5999999999999988773 1111 235899998
Q ss_pred EEEEECCCcEEEEECCCCc
Q 000054 2527 FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2527 LaSGS~DGtIrIWDL~sg~ 2545 (2548)
++++..++.|.+||+.++.
T Consensus 287 ~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 287 YVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp EEEETTTTEEEEEETTTTE
T ss_pred EEEECCCCeEEEEECCCCe
Confidence 4455579999999998764
No 136
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.61 E-value=1.4e-13 Score=173.80 Aligned_cols=212 Identities=12% Similarity=0.075 Sum_probs=157.6
Q ss_pred EEEEEEcCCCCEEEEEECCC---eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCCc--E
Q 000054 2222 TRAFSSHPLRPFFLVGSSNT---HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGT--V 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DG---sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DGt--V 2295 (2548)
+.+++|+|+|++|++++.++ .|++||+.+++... +.. |.+.+.+++|+|+|++|+ +++.||. |
T Consensus 181 v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~----------~~~~~~~~~~spdg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 181 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS----------FPRHNGAPAFSPDGSKLAFALSKTGSLNL 249 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EEC----------CSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred ceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eec----------CCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence 68999999999999999885 99999999987653 321 336899999999999888 6666665 8
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCC--eEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DG--tVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.+||+++++.. .+..|...+. .|+|+|+.|++++ ..++ .|.+||+.. + ....+..|...+.+
T Consensus 250 ~~~d~~~~~~~---------~l~~~~~~~~~~~~spdg~~l~~~s--~~~g~~~i~~~d~~~--~-~~~~l~~~~~~~~~ 315 (415)
T 2hqs_A 250 YVMDLASGQIR---------QVTDGRSNNTEPTWFPDSQNLAFTS--DQAGRPQVYKVNING--G-APQRITWEGSQNQD 315 (415)
T ss_dssp EEEETTTCCEE---------ECCCCSSCEEEEEECTTSSEEEEEE--CTTSSCEEEEEETTS--S-CCEECCCSSSEEEE
T ss_pred EEEECCCCCEE---------eCcCCCCcccceEECCCCCEEEEEE--CCCCCcEEEEEECCC--C-CEEEEecCCCcccC
Confidence 99999876532 2445555554 4999999888875 2345 677778865 2 23455567788999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCC---CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEE
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKG---GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY 2448 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~D---GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwd 2448 (2548)
++|+|+ +++|++++.+ +.|++|| +.+++.. .+
T Consensus 316 ~~~spd-------G~~l~~~~~~~g~~~i~~~d---~~~~~~~-~l---------------------------------- 350 (415)
T 2hqs_A 316 ADVSSD-------GKFMVMVSSNGGQQHIAKQD---LATGGVQ-VL---------------------------------- 350 (415)
T ss_dssp EEECTT-------SSEEEEEEECSSCEEEEEEE---TTTCCEE-EC----------------------------------
T ss_pred eEECCC-------CCEEEEEECcCCceEEEEEE---CCCCCEE-Ee----------------------------------
Confidence 999999 7788887764 5899999 4445442 22
Q ss_pred cccCCCCCEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCC
Q 000054 2449 IPKAHLGSVTRISTVPNTSLFLTGSKDG---DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR 2525 (2548)
Q Consensus 2449 i~~gH~~~VtsLafSPdG~~LaSGS~DG---tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd 2525 (2548)
..|. .+.+++|+|+|++|++++.|+ .|++||+..+. ...+ .+|.+. |.+++|+|.
T Consensus 351 --~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l--------------~~~~~~----v~~~~~~~~ 408 (415)
T 2hqs_A 351 --SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARL--------------PATDGQ----VKFPAWSPY 408 (415)
T ss_dssp --CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEEC--------------CCSSSE----EEEEEECCC
T ss_pred --cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEe--------------eCCCCC----CcCCccccc
Confidence 3343 788999999999999998877 79999997544 4434 566654 456699985
No 137
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.61 E-value=5.9e-14 Score=168.34 Aligned_cols=274 Identities=9% Similarity=-0.007 Sum_probs=176.9
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCCcEEEEEcCCC
Q 000054 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGTVCTWQLEVG 2303 (2548)
Q Consensus 2225 VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DGtVrVWDl~tg 2303 (2548)
+++++++.++++++.++.|++||..+++.+..+.... ...+..++|+|+|++++ ++..++.|.+||+.++
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~---------~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~ 75 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD---------KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC 75 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS---------CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC---------CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC
Confidence 4456888899999999999999999998877764311 12477899999998665 5567899999999887
Q ss_pred cccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC-----------CCeEEEEECCCCC-CCcceeeeccCCCeEE
Q 000054 2304 GRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN-----------GINVVVWDTLAPP-TSSRASITCHEGGARS 2371 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~-----------DGtVrIWDl~t~~-~k~v~sl~gHs~~VtS 2371 (2548)
+..............+....-..++|+|+.+++++ .. ++.|.+||+.+.. .+.+..+. +...+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~--~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~ 152 (349)
T 1jmx_B 76 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV--NPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYL 152 (349)
T ss_dssp EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE--EEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCC
T ss_pred cEEEEEEcccccccccccccceEECCCCCEEEEEc--ccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccc
Confidence 54321110000000000012235899999999875 12 4899999987521 11223333 3446889
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCc--------------------cccccccC
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSI--------------------NTCAHADA 2431 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~--------------------~~~~vafS 2431 (2548)
++|+|+ ++ +++++ +.|.+|| ..+++.+..+......... ....+.++
T Consensus 153 ~~~s~d-------g~-l~~~~--~~i~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (349)
T 1jmx_B 153 MRAADD-------GS-LYVAG--PDIYKMD---VKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 219 (349)
T ss_dssp EEECTT-------SC-EEEES--SSEEEEC---TTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred eeECCC-------Cc-EEEcc--CcEEEEe---CCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec
Confidence 999998 56 44444 3499999 5567766655221100000 00112233
Q ss_pred CCCCC-------------ccCCCCCceEEEcccCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccccc
Q 000054 2432 QTGSG-------------SKPGDQNGMLWYIPKAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE 2497 (2548)
Q Consensus 2432 pdGk~-------------v~s~D~sv~Iwdi~~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs 2497 (2548)
+++.. +...++.+++++. ..+...+.+++|+| ++++++++ ++.|.+||+.+++.+..+.
T Consensus 220 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~---- 292 (349)
T 1jmx_B 220 KDDKQDPATADLLYGYLSVDLKTGKTHTQEF-ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN---- 292 (349)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEE-EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----
T ss_pred CCCcCCccccccceeEEEEeccCCcEEeccc-ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----
Confidence 32211 1222344555555 33566788999999 99999988 8899999999999887762
Q ss_pred ccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2498 RHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.++ .+.+++|+|+| |++++.++.|++||+.++.
T Consensus 293 ---------~~~------~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 293 ---------LDH------TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp ---------CSS------CCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred ---------CCC------CccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 111 13467999998 7778889999999998764
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.60 E-value=7.8e-14 Score=161.66 Aligned_cols=225 Identities=13% Similarity=0.102 Sum_probs=156.8
Q ss_pred EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC-CcccccccCccc
Q 000054 2236 VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV-GGRSNVRPMESC 2314 (2548)
Q Consensus 2236 SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t-gk~i~i~p~~s~ 2314 (2548)
.++.|+.|++||..+++...... |.+.|.+++|+|+|+++++++ ++.|.+||+.+ ++....
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~-----------~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~------ 78 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQ-----------TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV------ 78 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEE-----------ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC------
T ss_pred CCCcceeEEEEeCCCCceeeecc-----------CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe------
Confidence 34678999999999887664432 347899999999999999987 88999999988 643221
Q ss_pred eeccCCc-ccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE-E
Q 000054 2315 LCFSSHA-MDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV-T 2390 (2548)
Q Consensus 2315 ~t~~gH~-~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV-S 2390 (2548)
...+. ..+ ..|+|+|+.+++++.. .++.++||.+..... ....+..+ ..+..++|+|+ ++.++ +
T Consensus 79 --~~~~~~~~~~~~~~spdg~~l~~~~~~-~~~~~~l~~~~~~~~-~~~~~~~~-~~~~~~~~spd-------g~~l~~~ 146 (297)
T 2ojh_A 79 --DTGFATICNNDHGISPDGALYAISDKV-EFGKSAIYLLPSTGG-TPRLMTKN-LPSYWHGWSPD-------GKSFTYC 146 (297)
T ss_dssp --CCTTCCCBCSCCEECTTSSEEEEEECT-TTSSCEEEEEETTCC-CCEECCSS-SSEEEEEECTT-------SSEEEEE
T ss_pred --ccccccccccceEECCCCCEEEEEEeC-CCCcceEEEEECCCC-ceEEeecC-CCccceEECCC-------CCEEEEE
Confidence 22332 233 3599999999988621 334566665543212 23444433 35899999998 56655 8
Q ss_pred EeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEE
Q 000054 2391 GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFL 2470 (2548)
Q Consensus 2391 GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~La 2470 (2548)
++.|+.+++|+++ ..+++. ..+ ..|...+.+++|+|+|++|+
T Consensus 147 ~~~~~~~~l~~~~-~~~~~~-~~~------------------------------------~~~~~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 147 GIRDQVFDIYSMD-IDSGVE-TRL------------------------------------THGEGRNDGPDYSPDGRWIY 188 (297)
T ss_dssp EEETTEEEEEEEE-TTTCCE-EEC------------------------------------CCSSSCEEEEEECTTSSEEE
T ss_pred ECCCCceEEEEEE-CCCCcc-eEc------------------------------------ccCCCccccceECCCCCEEE
Confidence 8899999999964 222222 222 45677899999999999888
Q ss_pred EEe-CCCcEEEEECC-CCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC-----------Cc
Q 000054 2471 TGS-KDGDVKLWDAK-AAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD-----------GS 2535 (2548)
Q Consensus 2471 SGS-~DGtIrIWDl~-Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D-----------Gt 2535 (2548)
.++ .|+.+++|++. .+..+..+ ..|. ..+..++|+|+| |++++.| +.
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~--------------~~~~----~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 189 FNSSRTGQMQIWRVRVDGSSVERI--------------TDSA----YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp EEECTTSSCEEEEEETTSSCEEEC--------------CCCS----EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred EEecCCCCccEEEECCCCCCcEEE--------------ecCC----cccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 766 59999999986 44444444 3343 235677999999 6766655 56
Q ss_pred EEEEECCCCcc
Q 000054 2536 VKLIQLEDYQH 2546 (2548)
Q Consensus 2536 IrIWDL~sg~l 2546 (2548)
|++||+.++..
T Consensus 251 l~~~d~~~~~~ 261 (297)
T 2ojh_A 251 VQLMDMDGGNV 261 (297)
T ss_dssp EEEEETTSCSC
T ss_pred EEEEecCCCCc
Confidence 99999987643
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.58 E-value=1.8e-14 Score=191.96 Aligned_cols=268 Identities=9% Similarity=-0.026 Sum_probs=176.5
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---------C
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---------G 2293 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---------G 2293 (2548)
.+++|+|+|+++++ +.||+|++||..+++....+.... .+...|.+++|+|||++|++++.+ +
T Consensus 20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~-------~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 20 PEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKK-------IESLRAIRYEISPDREYALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTT-------TTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred cccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccc-------ccccccceEEECCCCCEEEEEecCccceeeccee
Confidence 56789999997766 789999999999998766653211 011258999999999999999875 7
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe--
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA-- 2369 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V-- 2369 (2548)
.+.+||+.+++...+ ....+|...+. +|+|||+.|+.+. ++.|++||+.. ++.......+...+
T Consensus 92 ~i~~~d~~~~~~~~l------~~~~~~~~~~~~~~~SPdG~~la~~~----~~~i~~~~~~~--g~~~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 92 YYVLSKIPHGDPQSL------DPPEVSNAKLQYAGWGPKGQQLIFIF----ENNIYYCAHVG--KQAIRVVSTGKEGVIY 159 (723)
T ss_dssp EEEEEESSSCCCEEC------CCTTCCSCCCSBCCBCSSTTCEEEEE----TTEEEEESSSS--SCCEEEECCCBTTTEE
T ss_pred eEEEEECCCCceEec------cCCccccccccccEECCCCCEEEEEE----CCeEEEEECCC--CceEEEecCCCCCceE
Confidence 888999998753211 11234433333 4999999999985 58999999976 44444444433333
Q ss_pred ----------------EEEEEccCCCCCCCCCCEEEEEeCC-CcEEEEeCCccccCceeeeecCCCCCCCccccccccCC
Q 000054 2370 ----------------RSISVFDNDLGSGSVSPLIVTGGKG-GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ 2432 (2548)
Q Consensus 2370 ----------------tSLafsP~dlg~gs~g~lLVSGS~D-GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp 2432 (2548)
.++.|+|+ ++.|++++.| +.+++|++.... +. .......+.+.+
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpD-------g~~la~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~ 220 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPD-------GTRLAYAAINDSRVPIMELPTYT-GS-----------IYPTVKPYHYPK 220 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTT-------SSEEEEEEEECTTSCEEEECCCS-SS-----------SSCCCEEEECCB
T ss_pred CcccceeEEEEeccCcceEEECCC-------CCEEEEEEECCCccceEEeeccC-Cc-----------CCCcceeccCCC
Confidence 78999999 7788887754 578888853111 00 111223445555
Q ss_pred CCCCccCCCCCceEEEcccC--------------CCCCEEEEEEeCCCCEEEEEeC----CCcEEEEECCCCcEEEEecc
Q 000054 2433 TGSGSKPGDQNGMLWYIPKA--------------HLGSVTRISTVPNTSLFLTGSK----DGDVKLWDAKAAQLVYHWSK 2494 (2548)
Q Consensus 2433 dGk~v~s~D~sv~Iwdi~~g--------------H~~~VtsLafSPdG~~LaSGS~----DGtIrIWDl~Tgell~tL~~ 2494 (2548)
+|.. ..+..+++|++..+ |...+.+++|+|||+++++.+. ++.|++||+.+++....+.
T Consensus 221 ~G~~--~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~- 297 (723)
T 1xfd_A 221 AGSE--NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE- 297 (723)
T ss_dssp TTSC--CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE-
T ss_pred CCCC--CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE-
Confidence 5543 22345677775322 2567899999999999977754 3579999999998776552
Q ss_pred cccccccccCcccCCCCceeecEEEEEEcCCe--EEE--EECCC------cEEEEE-CCCC
Q 000054 2495 LHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS--CGGDG------SVKLIQ-LEDY 2544 (2548)
Q Consensus 2495 ~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS--GS~DG------tIrIWD-L~sg 2544 (2548)
..+.+.+......++|+||| |+. +..|| .|.+|| ..++
T Consensus 298 ------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~ 346 (723)
T 1xfd_A 298 ------------DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS 346 (723)
T ss_dssp ------------EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS
T ss_pred ------------eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCC
Confidence 11222221001234899999 553 56677 566677 3443
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.58 E-value=2e-13 Score=181.85 Aligned_cols=278 Identities=11% Similarity=0.031 Sum_probs=181.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+ ..++.+ .++.|++||+.+++...... +.+.+.+++|+|||++|+++ .|+.|.+||+.
T Consensus 84 v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~-----------~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~ 149 (706)
T 2z3z_A 84 SFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFD-----------TNEETASLDFSPVGDRVAYV-RNHNLYIARGG 149 (706)
T ss_dssp CEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEEC-----------CTTCCTTCEECTTSSEEEEE-ETTEEEEEECB
T ss_pred ceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccC-----------CcccccCCcCCCCCCEEEEE-ECCeEEEEecC
Confidence 588999999 666655 45999999999887544431 22568889999999999985 68999999998
Q ss_pred C-----CcccccccCccceeccCC------c--ccEEEEcCCCCEEEEEecc----------------------------
Q 000054 2302 V-----GGRSNVRPMESCLCFSSH------A--MDVSYITSSGSVIAAAGHS---------------------------- 2340 (2548)
Q Consensus 2302 t-----gk~i~i~p~~s~~t~~gH------~--~~V~afSpdGslLATgG~S---------------------------- 2340 (2548)
+ ++..............+. . ..-.+|+|||+.|++++..
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 150 KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 7 653322110000000000 0 1223599999999987410
Q ss_pred --CCCCeEEEEECCCCCCCcceee--eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC-----cEEEEeCCccccCcee
Q 000054 2341 --SNGINVVVWDTLAPPTSSRASI--TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG-----DVGIHDFRYIATGKTK 2411 (2548)
Q Consensus 2341 --S~DGtVrIWDl~t~~~k~v~sl--~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG-----tVrLWDLR~l~TGk~l 2411 (2548)
..+..|.+||+.+ ++..... ..|...+.+++|+|+ ++.|++++.|+ .|++|| ..+++..
T Consensus 230 ~~~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~spd-------g~~l~~~~~~~~~~~~~v~~~d---~~~g~~~ 297 (706)
T 2z3z_A 230 TPSHHVTVGIYHLAT--GKTVYLQTGEPKEKFLTNLSWSPD-------ENILYVAEVNRAQNECKVNAYD---AETGRFV 297 (706)
T ss_dssp SCCCEEEEEEEETTT--TEEEECCCCSCTTCEEEEEEECTT-------SSEEEEEEECTTSCEEEEEEEE---TTTCCEE
T ss_pred CCCCeeEEEEEECCC--CceEeeccCCCCceeEeeEEEECC-------CCEEEEEEeCCCCCeeEEEEEE---CCCCcee
Confidence 1346799999976 3332222 256778999999999 78888887776 999999 5556333
Q ss_pred eeecCCCCCC-CccccccccCC--CCCC--ccCCCCCceEEEcc---------cCCCCCEEE-EEEeCCCCEEEEEeC-C
Q 000054 2412 KHKHSDRGGS-SINTCAHADAQ--TGSG--SKPGDQNGMLWYIP---------KAHLGSVTR-ISTVPNTSLFLTGSK-D 2475 (2548)
Q Consensus 2412 ~tl~~~~~~s-~~~~~~vafSp--dGk~--v~s~D~sv~Iwdi~---------~gH~~~Vts-LafSPdG~~LaSGS~-D 2475 (2548)
..+....... ......+.|+| ||++ ++..++..++|.+. ..|...+.. ++|+|+|+.|+.++. +
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp EEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred eEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence 3321111110 11124568999 9987 34456667888642 346667876 799999987766554 4
Q ss_pred C----cEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE-ECC---CcEEEEECCCCc
Q 000054 2476 G----DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC-GGD---GSVKLIQLEDYQ 2545 (2548)
Q Consensus 2476 G----tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG-S~D---GtIrIWDL~sg~ 2545 (2548)
+ .|..||+.+++. ..+ . |.. .+.+++|+|+| ++.. +.+ +.|++||+.++.
T Consensus 378 ~~~~~~l~~~d~~~~~~-~~l--------------~-~~~----~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 378 SPLERHFYCIDIKGGKT-KDL--------------T-PES----GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CTTCBEEEEEETTCCCC-EES--------------C-CSS----SEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCceEEEEEEEcCCCCc-eec--------------c-CCC----ceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 4 677778777663 222 1 222 25677999999 5543 443 569999998764
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.56 E-value=1.4e-13 Score=184.11 Aligned_cols=277 Identities=10% Similarity=0.040 Sum_probs=181.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
+.+++|+|||++|++++. +.|++||+.++. ....+ ..|...+..++|+|||++|++++ ++.|.+||
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l----------~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d 178 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL----------THGEGFATDAKLSPKGGFVSFIR-GRNLWVID 178 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC----------CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc----------ccCCcccccccCCCCCCEEEEEe-CCcEEEEe
Confidence 467899999999999887 999999998872 22222 12347799999999999999987 56999999
Q ss_pred cCCCcccccccCccceeccCCc----------ccEEEEcCCCCEEEEEeccCCCC-------------------------
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHA----------MDVSYITSSGSVIAAAGHSSNGI------------------------- 2344 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~----------~~V~afSpdGslLATgG~SS~DG------------------------- 2344 (2548)
+.+++...+..........++. ..-.+|+|||+.|+++. .|+
T Consensus 179 ~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~---~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 179 LASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR---IDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp TTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE---EECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred cCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEE---EcCCCCceEecCCCCCCcccceEeecCC
Confidence 9887543221110000001110 11246999999998875 333
Q ss_pred --------eEEEEECCC-CCCCcceeee--ccCCCeEEEEEccCCCCCCCCCCEEEEEeC-----CCcEEEEeCCccccC
Q 000054 2345 --------NVVVWDTLA-PPTSSRASIT--CHEGGARSISVFDNDLGSGSVSPLIVTGGK-----GGDVGIHDFRYIATG 2408 (2548)
Q Consensus 2345 --------tVrIWDl~t-~~~k~v~sl~--gHs~~VtSLafsP~dlg~gs~g~lLVSGS~-----DGtVrLWDLR~l~TG 2408 (2548)
.|.+||+.+ . +...... .|...+.+++| |+ ++.|++++. ++.|++|| ..++
T Consensus 256 ~g~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~-pD-------g~~l~~~~~~~~~~~~~i~~~d---~~~g 322 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQA--QTQWIDLGKEQDIYLARVNW-RD-------PQHLSFQRQSRDQKKLDLVEVT---LASN 322 (741)
T ss_dssp TTSCCCEEEEEEECSSTTC--CCEEECCCSCSSEEEEEEEE-EE-------TTEEEEEEEETTSSEEEEEEEE---TTTC
T ss_pred CCCCCCeeEEEEEECCCCC--ceEEecCCCCcceEEEEEEe-CC-------CCEEEEEEecccCCeEEEEEEE---CCCC
Confidence 788888864 3 2222221 47788999999 98 777776653 57899999 5566
Q ss_pred ceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc--------ccCCCCCEEEE-EEeCCCCEEE-EEeCCC
Q 000054 2409 KTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRI-STVPNTSLFL-TGSKDG 2476 (2548)
Q Consensus 2409 k~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsL-afSPdG~~La-SGS~DG 2476 (2548)
+....+.............+.|+|||++ ++..++..++|.+ +..|...|..+ .|+|+|+.++ +++.|+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~ 402 (741)
T 2ecf_A 323 QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIES 402 (741)
T ss_dssp CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSC
T ss_pred ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCC
Confidence 6655542211111112346789999987 3445566677754 23567778887 5999998775 455565
Q ss_pred --cEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE-EEECC---CcEEEEECCCCc
Q 000054 2477 --DVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL-SCGGD---GSVKLIQLEDYQ 2545 (2548)
Q Consensus 2477 --tIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La-SGS~D---GtIrIWDL~sg~ 2545 (2548)
.++||++.. ++....+ .+ . ..+..++|+|+| ++ +++.+ +.+.+|+..++.
T Consensus 403 ~~~~~l~~~~~~g~~~~~l--------------~~-~----~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 403 ARESQIYAVPLQGGQPQRL--------------SK-A----PGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEK 461 (741)
T ss_dssp TTCBEEEEEETTCCCCEEC--------------CC-S----CSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCE
T ss_pred CceEEEEEEEcCCCCeeec--------------cc-C----CCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCe
Confidence 899999864 5444444 22 1 234577999999 44 33333 468889876653
No 142
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.54 E-value=7e-14 Score=177.97 Aligned_cols=212 Identities=11% Similarity=0.061 Sum_probs=147.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccc--------ccccCccceeccCCcccEE--EEcCCCCEEEE---Ee
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRS--------NVRPMESCLCFSSHAMDVS--YITSSGSVIAA---AG 2338 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i--------~i~p~~s~~t~~gH~~~V~--afSpdGslLAT---gG 2338 (2548)
..+..+++++++.++++++.|| +++|+....... ......... ...+...|. +|+++|+++++ +|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGL-LVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCE-EECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccc-cccCCCcccEEEEcCCCCEEEEEEecc
Confidence 4588999999999999999998 889886421100 000000011 112344565 48999999994 23
Q ss_pred ccCCCCeEEEEECCCC-----CC-Cc---ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCc
Q 000054 2339 HSSNGINVVVWDTLAP-----PT-SS---RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGK 2409 (2548)
Q Consensus 2339 ~SS~DGtVrIWDl~t~-----~~-k~---v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk 2409 (2548)
+.|+.|++||+... .. ++ +..+.+|.+.|++++|+|++ +.+|++|+.||+|++||++ ++.
T Consensus 115 --s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~------~~~las~s~Dg~v~iwD~~---~~~ 183 (434)
T 2oit_A 115 --EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV------PSMVAVCLADGSIAVLQVT---ETV 183 (434)
T ss_dssp --TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC------TTEEEEEETTSCEEEEEES---SSE
T ss_pred --CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC------CCEEEEEECCCeEEEEEcC---CCc
Confidence 48999999998642 00 12 35566799999999999985 6799999999999999954 343
Q ss_pred eeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000054 2410 TKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV 2489 (2548)
Q Consensus 2410 ~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell 2489 (2548)
..... .+|...|++++|+|+|++|++|+.||+|++||++ ++..
T Consensus 184 ~~~~~------------------------------------~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~ 226 (434)
T 2oit_A 184 KVCAT------------------------------------LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK 226 (434)
T ss_dssp EEEEE------------------------------------ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE
T ss_pred ceeec------------------------------------cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc
Confidence 33222 4588899999999999999999999999999998 6666
Q ss_pred EEecccccccccccCcccCCCCceeecEEEEEEcCCe-E--EEEECCCc------EEEEECCCC
Q 000054 2490 YHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-F--LSCGGDGS------VKLIQLEDY 2544 (2548)
Q Consensus 2490 ~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-L--aSGS~DGt------IrIWDL~sg 2544 (2548)
.++.. |... ..+|. ..|.+++|++++ + ++++.||. +++|++...
T Consensus 227 ~~~~~-~~~~------~~~~~----~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 227 KVIPC-PPFY------ESDHP----VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEECC-CTTC------CTTSC----EEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccccC-Cccc------CCCCc----eeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 65521 1000 01122 246788999988 3 24555543 899999754
No 143
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.54 E-value=1.1e-13 Score=180.83 Aligned_cols=233 Identities=9% Similarity=0.028 Sum_probs=162.1
Q ss_pred EEEEEEEcCCCCEEEEEEC-CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC---CCcEE
Q 000054 2221 STRAFSSHPLRPFFLVGSS-NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---DGTVC 2296 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~-DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~---DGtVr 2296 (2548)
.+.+++|+|||++||+++. ||+++||++++++.. .+.. .+...|..++|+|| +.+++++. +....
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~---------~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~ 91 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNR---------EPINSVLDPHYGVG-RVILVRDVSKGAEQHA 91 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCS---------SCCSEECEECTTCS-EEEEEEECSTTSCCEE
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeec---------ccccccccccCCCC-eEEEEeccCCCCcceE
Confidence 3789999999999998876 999999998666543 2211 12257899999999 77777775 56677
Q ss_pred EEEcCC--CcccccccCccceeccCCcccEEEEcCCCCEE-EEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2297 TWQLEV--GGRSNVRPMESCLCFSSHAMDVSYITSSGSVI-AAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2297 VWDl~t--gk~i~i~p~~s~~t~~gH~~~V~afSpdGslL-ATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
+|.+.. ..... .....+...+.+++|+|+.+ ++.+ .++.+.+||+.+ ++... +..+.. .+++
T Consensus 92 l~~~~~~~~g~~~-------~l~~~~~~~~~~~s~dg~~~~~~s~---~~~~~~l~d~~~--g~~~~-l~~~~~--~~~~ 156 (582)
T 3o4h_A 92 LFKVNTSRPGEEQ-------RLEAVKPMRILSGVDTGEAVVFTGA---TEDRVALYALDG--GGLRE-LARLPG--FGFV 156 (582)
T ss_dssp EEEEETTSTTCCE-------ECTTSCSBEEEEEEECSSCEEEEEE---CSSCEEEEEEET--TEEEE-EEEESS--CEEE
T ss_pred EEEEeccCCCccc-------cccCCCCceeeeeCCCCCeEEEEec---CCCCceEEEccC--CcEEE-eecCCC--ceEE
Confidence 777654 22111 00112222355788888643 3332 344555999975 33333 333333 8899
Q ss_pred EccCCCCCCCCCCEEEEEeCC----CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKG----GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~D----GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi 2449 (2548)
|+|+ |+.|++++.| +.|++|| +.+++.. .+
T Consensus 157 ~spD-------G~~la~~~~~~~~~~~i~~~d---~~~g~~~-~l----------------------------------- 190 (582)
T 3o4h_A 157 SDIR-------GDLIAGLGFFGGGRVSLFTSN---LSSGGLR-VF----------------------------------- 190 (582)
T ss_dssp EEEE-------TTEEEEEEEEETTEEEEEEEE---TTTCCCE-EE-----------------------------------
T ss_pred ECCC-------CCEEEEEEEcCCCCeEEEEEc---CCCCCce-Ee-----------------------------------
Confidence 9999 8899988877 7899999 4445433 32
Q ss_pred ccCCCCCEEEEEEeCCCCEEEEEeCCC--cEEEEECCCCcEEEEecccccccccccCcccCCCCceeec----EEEEEEc
Q 000054 2450 PKAHLGSVTRISTVPNTSLFLTGSKDG--DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAG----VTDIQVV 2523 (2548)
Q Consensus 2450 ~~gH~~~VtsLafSPdG~~LaSGS~DG--tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~----VtsLafS 2523 (2548)
..|.+.+..++|+|||+.|+++..|| .|++||+.+++.. .+ .+|...+... .....|+
T Consensus 191 -~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~s 254 (582)
T 3o4h_A 191 -DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL--------------ELPSKDFSSYRPTAITWLGYL 254 (582)
T ss_dssp -CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC--------------CCSCSHHHHHCCSEEEEEEEC
T ss_pred -ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec--------------cCCCcChhhhhhccccceeEc
Confidence 55778889999999999999888899 8999999998877 33 3444433222 1223499
Q ss_pred CCe--EEEEECCCcEEEEEC
Q 000054 2524 SRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2524 PdG--LaSGS~DGtIrIWDL 2541 (2548)
||| +++++.||++++|++
T Consensus 255 pdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 255 PDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp TTSCEEEEEEETTEEEEEET
T ss_pred CCCcEEEEEEcCCcEEEEEE
Confidence 999 778999999999998
No 144
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.53 E-value=9.3e-13 Score=159.71 Aligned_cols=253 Identities=10% Similarity=0.125 Sum_probs=155.8
Q ss_pred EEEEEcCCCCEEEEEEC--CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEE
Q 000054 2223 RAFSSHPLRPFFLVGSS--NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCTWQ 2299 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~--DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtVrVWD 2299 (2548)
..++|+|+|++++++.. ++.|++||+.+++... +.... .+...+..++|+|+|++|++++ .++.|.+|+
T Consensus 43 ~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~-~~~~~-------~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 43 TYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHK-LNTVV-------APGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp CCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEE-EEEEE-------EESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ceEEEccCCeEEEEEecCCCceEEEEEecCCcEEE-eeeee-------cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 56888999994444432 6899999997765322 11111 1236788999999999998888 779999999
Q ss_pred cCCCcccccccCccceeccC-------CcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc--ceeeecc-CC
Q 000054 2300 LEVGGRSNVRPMESCLCFSS-------HAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASITCH-EG 2367 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~g-------H~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~--v~sl~gH-s~ 2367 (2548)
+......... .. ....+ +...+ .+++|+|+++++ + ..++.|.+||+.. .++. +..+..+ ..
T Consensus 115 ~~~~g~~~~~--~~-~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~-~--~~~~~v~~~~~~~-~g~~~~~~~~~~~~g~ 187 (347)
T 3hfq_A 115 IAADGALTLT--DT-VQHSGHGPRPEQDGSHIHYTDLTPDNRLAVI-D--LGSDKVYVYNVSD-AGQLSEQSVLTMEAGF 187 (347)
T ss_dssp ECTTSCEEEE--EE-EECCCCCSSTTCSSCCEEEEEECTTSCEEEE-E--TTTTEEEEEEECT-TSCEEEEEEEECCTTC
T ss_pred eCCCCCeeec--ce-eecCCCCCCccccCCCceEEEECCCCcEEEE-e--CCCCEEEEEEECC-CCcEEEeeeEEcCCCC
Confidence 9643221110 00 00111 11123 358999995444 3 3688999999973 1322 2222333 34
Q ss_pred CeEEEEEccCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCceee--eecCCCCCCCccccccccCCCCCCccCCCCCc
Q 000054 2368 GARSISVFDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKTKK--HKHSDRGGSSINTCAHADAQTGSGSKPGDQNG 2444 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~l~--tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv 2444 (2548)
.+..++|+|+ ++ +++++..++.|.+||+. ..+++... .... .+.+
T Consensus 188 ~p~~~~~spd-------g~~l~v~~~~~~~v~v~~~~-~~~g~~~~~~~~~~--------------~~~~---------- 235 (347)
T 3hfq_A 188 GPRHLVFSPD-------GQYAFLAGELSSQIASLKYD-TQTGAFTQLGIVKT--------------IPAD---------- 235 (347)
T ss_dssp CEEEEEECTT-------SSEEEEEETTTTEEEEEEEE-TTTTEEEEEEEEES--------------SCTT----------
T ss_pred CCceEEECCC-------CCEEEEEeCCCCEEEEEEec-CCCCceEEeeeeee--------------cCCC----------
Confidence 7889999998 66 45556778999999954 12333211 1100 0000
Q ss_pred eEEEcccCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCC-C--cEEEEecccccccccccCcccCCCCceeecEEEE
Q 000054 2445 MLWYIPKAHLGSVTRISTVPNTSLF-LTGSKDGDVKLWDAKA-A--QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDI 2520 (2548)
Q Consensus 2445 ~Iwdi~~gH~~~VtsLafSPdG~~L-aSGS~DGtIrIWDl~T-g--ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsL 2520 (2548)
......+..++|+|+|++| ++...++.|.+||+.. + +.+..+ ..++. .+.++
T Consensus 236 ------~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~--------------~~~~~----~~~~~ 291 (347)
T 3hfq_A 236 ------YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI--------------STEGD----FPRDF 291 (347)
T ss_dssp ------CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE--------------ECSSS----CCCEE
T ss_pred ------CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE--------------ecCCC----CcCeE
Confidence 0112468899999999977 5556789999999973 3 333333 22322 23567
Q ss_pred EEcCCe--EEEEE-CCCcEEEEEC--CCCcc
Q 000054 2521 QVVSRG--FLSCG-GDGSVKLIQL--EDYQH 2546 (2548)
Q Consensus 2521 afSPdG--LaSGS-~DGtIrIWDL--~sg~l 2546 (2548)
+|+|+| |++++ .++.|.+|++ +++.+
T Consensus 292 ~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 292 DLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 999999 66655 4589999955 45543
No 145
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.52 E-value=1e-13 Score=176.41 Aligned_cols=216 Identities=10% Similarity=0.003 Sum_probs=151.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCce--------eEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE----EE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA--------TATYGVLPAANVPPPYALASISALQFDHYGHRFA----SA 2289 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~--------l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La----SG 2289 (2548)
+..+++++++.++++|+.|+ +++|+...... ......... ....+.+.|++++|+|+|++|+ +|
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQG---LLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCC---EEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcc---ccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 46677789999999999988 99988642110 000000000 0112346799999999999999 78
Q ss_pred eCCCcEEEEEcCCCccc---ccccCccceeccCCcccEEE--EcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcceeee
Q 000054 2290 ALDGTVCTWQLEVGGRS---NVRPMESCLCFSSHAMDVSY--ITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2548)
Q Consensus 2290 S~DGtVrVWDl~tgk~i---~i~p~~s~~t~~gH~~~V~a--fSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~ 2363 (2548)
+.|++|++||++++... ...+......+.+|...|.+ |+|+ ++++++++ .||+|++||++. ...+....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s---~Dg~v~iwD~~~--~~~~~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL---ADGSIAVLQVTE--TVKVCATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE---TTSCEEEEEESS--SEEEEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE---CCCeEEEEEcCC--Ccceeecc
Confidence 89999999999754100 00112223446778888874 8887 78999986 899999999986 34555566
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000054 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
+|...|++++|+|+ +++|++|+.||+|++||++ ++....+.....
T Consensus 190 ~~~~~v~~v~wspd-------g~~lasgs~dg~v~iwd~~----~~~~~~~~~~~~------------------------ 234 (434)
T 2oit_A 190 PSTVAVTSVCWSPK-------GKQLAVGKQNGTVVQYLPT----LQEKKVIPCPPF------------------------ 234 (434)
T ss_dssp CGGGCEEEEEECTT-------SSCEEEEETTSCEEEECTT----CCEEEEECCCTT------------------------
T ss_pred CCCCceeEEEEcCC-------CCEEEEEcCCCcEEEEccC----CcccccccCCcc------------------------
Confidence 78999999999998 7899999999999999965 233333210000
Q ss_pred ceEEEcccCCCCCEEEEEEeCCCCEEEEE-eCCCc------EEEEECCCC
Q 000054 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTG-SKDGD------VKLWDAKAA 2486 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG~~LaSG-S~DGt------IrIWDl~Tg 2486 (2548)
....|...|.+++|++++.++++. +.||. +++||+++.
T Consensus 235 -----~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 235 -----YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp -----CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred -----cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 002355689999999998887654 34543 899999864
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.48 E-value=1.4e-11 Score=148.33 Aligned_cols=225 Identities=10% Similarity=-0.001 Sum_probs=156.2
Q ss_pred EEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe--CCCcEEEEE
Q 000054 2223 RAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA--LDGTVCTWQ 2299 (2548)
Q Consensus 2223 ~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS--~DGtVrVWD 2299 (2548)
..++++|+|++++ ++..++.|.+||..+++.+..+....+.. +.......+.+++|+|+|+++++++ .++.|.+||
T Consensus 92 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 92 FGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR-TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp CSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC-CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc-ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 4567889999655 45667999999999999887775422110 0011112378999999999888776 478999999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec----cCCCeEEEEEc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC----HEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g----Hs~~VtSLafs 2375 (2548)
.++++.....+ ..+....-..++|+|+.+++++ .++.|.+||+.+ .+.+..+.. +...+.+++|+
T Consensus 171 ~~~~~~~~~~~------~~~~~~~~~~~s~dg~~l~~~~---~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~s 239 (353)
T 3vgz_A 171 GGNIKLKTAIQ------NTGKMSTGLALDSEGKRLYTTN---ADGELITIDTAD--NKILSRKKLLDDGKEHFFINISLD 239 (353)
T ss_dssp TTTTEEEEEEC------CCCTTCCCCEEETTTTEEEEEC---TTSEEEEEETTT--TEEEEEEECCCSSSCCCEEEEEEE
T ss_pred CCCCceEEEec------CCCCccceEEECCCCCEEEEEc---CCCeEEEEECCC--CeEEEEEEcCCCCCCcccceEEEC
Confidence 98875432211 0111112235899999998885 789999999976 455555443 56678899999
Q ss_pred cCCCCCCCCCCEEEEE-eCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2376 DNDLGSGSVSPLIVTG-GKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSG-S~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
|+ ++.++++ ..++.|.+|| ..+++.+..+. ...
T Consensus 240 ~d-------g~~l~~~~~~~~~v~~~d---~~~~~~~~~~~------------------------------------~~~ 273 (353)
T 3vgz_A 240 TA-------RQRAFITDSKAAEVLVVD---TRNGNILAKVA------------------------------------APE 273 (353)
T ss_dssp TT-------TTEEEEEESSSSEEEEEE---TTTCCEEEEEE------------------------------------CSS
T ss_pred CC-------CCEEEEEeCCCCEEEEEE---CCCCcEEEEEE------------------------------------cCC
Confidence 98 5555544 4569999999 55666655541 111
Q ss_pred CCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000054 2455 GSVTRISTVPNTSLFLTGS-KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS-~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
...++|+|+|++++.++ .++.|.+||..+++.+..++ .+ ..+.+++|+|+|
T Consensus 274 --~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~--------------~~-----~~~~~~~~s~dg 325 (353)
T 3vgz_A 274 --SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD--------------TP-----THPNSLALSADG 325 (353)
T ss_dssp --CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE--------------CC-----SEEEEEEECTTS
T ss_pred --CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe--------------cC-----CCCCeEEEcCCC
Confidence 14689999999665555 69999999999999887762 11 124677999999
No 147
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.48 E-value=2.8e-11 Score=147.86 Aligned_cols=249 Identities=12% Similarity=0.122 Sum_probs=158.6
Q ss_pred EEEEEcCCCCEEEEEECC----CeEEEEEcCC--CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcE
Q 000054 2223 RAFSSHPLRPFFLVGSSN----THIYLWEFGK--DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTV 2295 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~D----GsVrLWDl~t--g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtV 2295 (2548)
..++|+|+|++|++++.+ +.|.+|+++. ++. ..+..... +......+++ +++++++++ .++.|
T Consensus 53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~-~~~~~~~~-------~~~~p~~~~~--dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL-HLLNTQKT-------MGADPCYLTT--NGKNIVTANYSGGSI 122 (361)
T ss_dssp CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE-EEEEEEEC-------SSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE-EEeeEecc-------CCCCcEEEEE--CCCEEEEEECCCCEE
Confidence 567899999999998876 8999999875 432 22222111 2256777888 888777776 57899
Q ss_pred EEEEcCCCcccccccCccceeccCC--------cccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCC----C-c--
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSH--------AMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPT----S-S-- 2358 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH--------~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~----k-~-- 2358 (2548)
.+|++......... .......+. ...+ .+++|+|+.+++++ ..++.|.+|++..... + .
T Consensus 123 ~~~~~~~~g~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~--~~~~~v~v~~~~~~~~~~~~~~l~~ 198 (361)
T 3scy_A 123 TVFPIGQDGALLPA--SDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD--LGTDQIHKFNINPNANADNKEKFLT 198 (361)
T ss_dssp EEEEBCTTSCBCSC--SEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTCCTTTCCCCEE
T ss_pred EEEEeCCCCcCccc--ceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe--CCCCEEEEEEEcCCCCcccccceee
Confidence 99999755432111 000111111 1112 35899999777765 3688999999875332 2 1
Q ss_pred ----ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC
Q 000054 2359 ----RASITCHEGGARSISVFDNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT 2433 (2548)
Q Consensus 2359 ----v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd 2433 (2548)
......+...+..++|+|+ ++++++++ .++.|.+||+ .+++.....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~spd-------g~~l~v~~~~~~~v~v~~~---~~g~~~~~~------------------- 249 (361)
T 3scy_A 199 KGTPEAFKVAPGSGPRHLIFNSD-------GKFAYLINEIGGTVIAFRY---ADGMLDEIQ------------------- 249 (361)
T ss_dssp EEEEEEEECCTTCCEEEEEECTT-------SSEEEEEETTTCEEEEEEE---ETTEEEEEE-------------------
T ss_pred cccccceecCCCCCCeEEEEcCC-------CCEEEEEcCCCCeEEEEEe---cCCceEEeE-------------------
Confidence 1112234567889999999 67666666 7999999994 344321111
Q ss_pred CCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC--CcEEEEECC--CCcE--EEEecccccccccccCccc
Q 000054 2434 GSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD--GDVKLWDAK--AAQL--VYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2434 Gk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D--GtIrIWDl~--Tgel--l~tL~~~Hs~hsfl~~tl~ 2507 (2548)
-......+......++|+|+|++|+++..+ +.|.+|++. +++. +..+ .
T Consensus 250 ------------~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~--------------~ 303 (361)
T 3scy_A 250 ------------TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ--------------L 303 (361)
T ss_dssp ------------EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE--------------E
T ss_pred ------------EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe--------------c
Confidence 000112344566899999999998776654 899999995 4553 3333 1
Q ss_pred CCCCceeecEEEEEEcCCe--EEEEE-CCCcEEEEECC--CCc
Q 000054 2508 GFGGVVRAGVTDIQVVSRG--FLSCG-GDGSVKLIQLE--DYQ 2545 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG--LaSGS-~DGtIrIWDL~--sg~ 2545 (2548)
. + ..+.+++|+|+| |++++ .++.|.+|+++ ++.
T Consensus 304 ~-g----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 304 T-G----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp C-S----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred C-C----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence 1 1 124567999999 66555 77999997654 554
No 148
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.46 E-value=3.6e-12 Score=152.13 Aligned_cols=242 Identities=10% Similarity=0.110 Sum_probs=157.4
Q ss_pred EEEEEEcCCCCEEEEEECC-CeEEEEEcC--CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CCcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSN-THIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D-GsVrLWDl~--tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DGtVrV 2297 (2548)
+.+++|+|+|+++++++.+ +.|++|+++ +++... +..... + +.+..++|+|+|+++++++. ++.|.+
T Consensus 40 ~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~-------~-~~~~~~~~s~dg~~l~~~~~~~~~i~~ 110 (343)
T 1ri6_A 40 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-AAESAL-------P-GSLTHISTDHQGQFVFVGSYNAGNVSV 110 (343)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEEEEC-------S-SCCSEEEECTTSSEEEEEETTTTEEEE
T ss_pred CceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee-cccccc-------C-CCCcEEEEcCCCCEEEEEecCCCeEEE
Confidence 3668899999999988876 999999998 554322 111111 1 36889999999998877665 889999
Q ss_pred EEcCCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc--e--eeec-cCCCeEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR--A--SITC-HEGGARS 2371 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v--~--sl~g-Hs~~VtS 2371 (2548)
||+..+.... .......+.. ...+++|+|+.+++++ ..++.|.+||+... ++.. . .+.. ....+.+
T Consensus 111 ~d~~~~~~~~-----~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 182 (343)
T 1ri6_A 111 TRLEDGLPVG-----VVDVVEGLDGCHSANISPDNRTLWVPA--LKQDRICLFTVSDD-GHLVAQDPAEVTTVEGAGPRH 182 (343)
T ss_dssp EEEETTEEEE-----EEEEECCCTTBCCCEECTTSSEEEEEE--GGGTEEEEEEECTT-SCEEEEEEEEEECSTTCCEEE
T ss_pred EECCCCcccc-----ccccccCCCCceEEEECCCCCEEEEec--CCCCEEEEEEecCC-CceeeecccccccCCCCCcce
Confidence 9995332111 1111222222 1235899999888775 26899999999751 2221 1 2233 3457889
Q ss_pred EEEccCCCCCCCCCCEE-EEEeCCCcEEEEeCCccccCce--eeeecCCC-C-CCCccccccccCCCCCC---ccCCCCC
Q 000054 2372 ISVFDNDLGSGSVSPLI-VTGGKGGDVGIHDFRYIATGKT--KKHKHSDR-G-GSSINTCAHADAQTGSG---SKPGDQN 2443 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lL-VSGS~DGtVrLWDLR~l~TGk~--l~tl~~~~-~-~s~~~~~~vafSpdGk~---v~s~D~s 2443 (2548)
++|+|+ ++.+ +++..++.|.+||+.. .+++. ........ . ........+.++|+|+. ....++.
T Consensus 183 ~~~~pd-------g~~l~~~~~~~~~i~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~ 254 (343)
T 1ri6_A 183 MVFHPN-------EQYAYCVNELNSSVDVWELKD-PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL 254 (343)
T ss_dssp EEECTT-------SSEEEEEETTTTEEEEEESSC-TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred EEECCC-------CCEEEEEeCCCCEEEEEEecC-CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE
Confidence 999998 5655 5555899999999641 23332 22221111 1 11222335889999986 2345778
Q ss_pred ceEEEccc--C---------CCCCEEEEEEeCCCCEEEEEe-CCCcEEEE--ECCCCcE
Q 000054 2444 GMLWYIPK--A---------HLGSVTRISTVPNTSLFLTGS-KDGDVKLW--DAKAAQL 2488 (2548)
Q Consensus 2444 v~Iwdi~~--g---------H~~~VtsLafSPdG~~LaSGS-~DGtIrIW--Dl~Tgel 2488 (2548)
+.+|++.. + ....+.+++|+|+|++|++++ .|+.|.+| |..+++.
T Consensus 255 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 255 ITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp EEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred EEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 89998651 1 123478899999999888887 58999999 5456644
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.45 E-value=9.5e-13 Score=175.53 Aligned_cols=249 Identities=10% Similarity=0.032 Sum_probs=159.1
Q ss_pred EEEEEEcCCCCEEEEEECC---------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2222 TRAFSSHPLRPFFLVGSSN---------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D---------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
+.+++|+|||++|++++.+ +.+++||+.+++. ..+... ..|...+..++|+|||++|++++.
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-------~~~~~~~~~~~~SPdG~~la~~~~- 133 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPP-------EVSNAKLQYAGWGPKGQQLIFIFE- 133 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCT-------TCCSCCCSBCCBCSSTTCEEEEET-
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCC-------ccccccccccEECCCCCEEEEEEC-
Confidence 4788999999999998764 7888999998875 333221 224456889999999999999886
Q ss_pred CcEEEEEcCCCcccccccCcc-ceeccCCcc-----------cEEEEcCCCCEEEEEeccC-------------------
Q 000054 2293 GTVCTWQLEVGGRSNVRPMES-CLCFSSHAM-----------DVSYITSSGSVIAAAGHSS------------------- 2341 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s-~~t~~gH~~-----------~V~afSpdGslLATgG~SS------------------- 2341 (2548)
+.|.+||+.+++...+..... ...+.++.. .-.+|+|||+.|+++....
T Consensus 134 ~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (723)
T 1xfd_A 134 NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV 213 (723)
T ss_dssp TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcc
Confidence 899999998875432211000 000011111 1245999999999875210
Q ss_pred ------------CCCeEEEEECCCCCCCcceeeecc------CCCeEEEEEccCCCCCCCCCCEEEEEeC----CCcEEE
Q 000054 2342 ------------NGINVVVWDTLAPPTSSRASITCH------EGGARSISVFDNDLGSGSVSPLIVTGGK----GGDVGI 2399 (2548)
Q Consensus 2342 ------------~DGtVrIWDl~t~~~k~v~sl~gH------s~~VtSLafsP~dlg~gs~g~lLVSGS~----DGtVrL 2399 (2548)
.+..|++||+.+ ++....+..+ ...+.+++|+|+ ++++++... ++.|++
T Consensus 214 ~~~~~~~~G~~~~~~~l~~~d~~~--~~~~~~l~~~~~~~~~~~~~~~~~~SpD-------g~~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 214 KPYHYPKAGSENPSISLHVIGLNG--PTHDLEMMPPDDPRMREYYITMVKWATS-------TKVAVTWLNRAQNVSILTL 284 (723)
T ss_dssp EEEECCBTTSCCCEEEEEEEESSS--SCCCEECCCCCCGGGSSEEEEEEEESSS-------SEEEEEEEETTSCEEEEEE
T ss_pred eeccCCCCCCCCCeeEEEEEECCC--CceeEEeeCCccCCCccceeEEEEEeCC-------CeEEEEEEcCCCCeEEEEE
Confidence 012799999976 3333444443 668999999998 677766643 357999
Q ss_pred EeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE----EEEEEeCCCCEEEE--Ee
Q 000054 2400 HDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV----TRISTVPNTSLFLT--GS 2473 (2548)
Q Consensus 2400 WDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V----tsLafSPdG~~LaS--GS 2473 (2548)
|| ..++++..... ..|.+.+ ..++|+|+|+.|+. +.
T Consensus 285 ~d---~~~g~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 326 (723)
T 1xfd_A 285 CD---ATTGVCTKKHE-----------------------------------DESEAWLHRQNEEPVFSKDGRKFFFIRAI 326 (723)
T ss_dssp EE---TTTCCEEEEEE-----------------------------------EECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred Ee---CCCCcceEEEE-----------------------------------eccCCEEeccCCCceEcCCCCeEEEEEec
Confidence 99 55666544430 1122332 36789999997664 45
Q ss_pred CCC------cEEEEE-CCCCcE--EEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC---CcEEEE
Q 000054 2474 KDG------DVKLWD-AKAAQL--VYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD---GSVKLI 2539 (2548)
Q Consensus 2474 ~DG------tIrIWD-l~Tgel--l~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D---GtIrIW 2539 (2548)
.|| .|.+|| ..+++. ...+ ..++.. + ...++|+|+| |+..+.+ +.+++|
T Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l-------------~~~~~~-~---~~~~~~spdg~~l~~~~~~~~~~~~~l~ 389 (723)
T 1xfd_A 327 PQGGRGKFYHITVSSSQPNSSNDNIQSI-------------TSGDWD-V---TKILAYDEKGNKIYFLSTEDLPRRRQLY 389 (723)
T ss_dssp CCSSSSCEEEEEEECSSCCSSSCCCCBS-------------CCSSSC-E---EEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred ccCCCcceeEEEEEeccCCCCccceeEe-------------ecCCeE-E---EeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence 677 566777 344431 2222 112222 2 2235899999 6555544 889999
Q ss_pred ECCC
Q 000054 2540 QLED 2543 (2548)
Q Consensus 2540 DL~s 2543 (2548)
+++.
T Consensus 390 ~~~~ 393 (723)
T 1xfd_A 390 SANT 393 (723)
T ss_dssp EECS
T ss_pred EEeC
Confidence 9864
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.45 E-value=2.4e-12 Score=180.43 Aligned_cols=259 Identities=12% Similarity=0.084 Sum_probs=185.6
Q ss_pred EEEEEEc-CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCC-CeEEEEEccCCCEEEEEeCCCcEE-EE
Q 000054 2222 TRAFSSH-PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALA-SISALQFDHYGHRFASAALDGTVC-TW 2298 (2548)
Q Consensus 2222 V~~VsfS-PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~-~VtsVaFSPdG~~LaSGS~DGtVr-VW 2298 (2548)
+.+++|+ |+|+++++++ ++.|.+|+..+++... + .. |.+ .+..++|+ +|+.+++++.++.+. +|
T Consensus 298 v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~---~~-------~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~ 364 (1045)
T 1k32_A 298 KFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V---PE-------PLRIRYVRRGGD-TKVAFIHGTREGDFLGIY 364 (1045)
T ss_dssp GGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C---SC-------CSCEEEEEECSS-SEEEEEEEETTEEEEEEE
T ss_pred cceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-c---cC-------CCcceEEeeeEc-CCCeEEEEECCCceEEEE
Confidence 4789999 9999999887 8899999998776432 2 11 335 79999999 999999999988888 89
Q ss_pred EcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
|+.++.... +.+|...+. +|+|+|+.+++++ .++.|++||+.+ ++......+|.+.+.+++|+|
T Consensus 365 d~~~~~~~~---------l~~~~~~~~~~~~SpDG~~la~~~---~~~~v~~~d~~t--g~~~~~~~~~~~~v~~~~~Sp 430 (1045)
T 1k32_A 365 DYRTGKAEK---------FEENLGNVFAMGVDRNGKFAVVAN---DRFEIMTVDLET--GKPTVIERSREAMITDFTISD 430 (1045)
T ss_dssp ETTTCCEEE---------CCCCCCSEEEEEECTTSSEEEEEE---TTSEEEEEETTT--CCEEEEEECSSSCCCCEEECT
T ss_pred ECCCCCceE---------ecCCccceeeeEECCCCCEEEEEC---CCCeEEEEECCC--CceEEeccCCCCCccceEECC
Confidence 988664221 235555554 5999999999986 789999999976 556666668999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCC----------cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc--cCCCCCc
Q 000054 2377 NDLGSGSVSPLIVTGGKGG----------DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS--KPGDQNG 2444 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DG----------tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v--~s~D~sv 2444 (2548)
+ +++|++++.++ .|++||+ .+++ ...+... ......+.|+|||+.+ .+.++..
T Consensus 431 D-------G~~la~~~~~~~~~~~~~~~~~i~l~d~---~~g~-~~~l~~~----~~~~~~~~~spdG~~l~~~s~~~~~ 495 (1045)
T 1k32_A 431 N-------SRFIAYGFPLKHGETDGYVMQAIHVYDM---EGRK-IFAATTE----NSHDYAPAFDADSKNLYYLSYRSLD 495 (1045)
T ss_dssp T-------SCEEEEEEEECSSTTCSCCEEEEEEEET---TTTE-EEECSCS----SSBEEEEEECTTSCEEEEEESCCCC
T ss_pred C-------CCeEEEEecCccccccCCCCCeEEEEEC---CCCc-EEEeeCC----CcccCCceEcCCCCEEEEEecccCC
Confidence 9 78888887654 9999994 4555 3333111 1122346788888862 2221111
Q ss_pred eEE------------------------------------------Ec---------ccCCCCCEEEEEEeCCCCEEEE--
Q 000054 2445 MLW------------------------------------------YI---------PKAHLGSVTRISTVPNTSLFLT-- 2471 (2548)
Q Consensus 2445 ~Iw------------------------------------------di---------~~gH~~~VtsLafSPdG~~LaS-- 2471 (2548)
..| +. +..|.+.+..++++|+|.++++
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~ 575 (1045)
T 1k32_A 496 PSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 575 (1045)
T ss_dssp CEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECC
T ss_pred cCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEec
Confidence 111 10 1236678899999999988875
Q ss_pred -----------EeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEE
Q 000054 2472 -----------GSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKL 2538 (2548)
Q Consensus 2472 -----------GS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrI 2538 (2548)
...++.|.+||+.+++.. .+ . ..+..+++|||| |++++.| .|++
T Consensus 576 ~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l--------------~-------~~v~~~~~S~DG~~l~~~~~~-~i~~ 632 (1045)
T 1k32_A 576 VHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EV--------------K-------NNLTDLRLSADRKTVMVRKDD-GKIY 632 (1045)
T ss_dssp CCCSHHHHHHCCCCCEEEEEEETTTCCEE-EE--------------E-------EEEEEEEECTTSCEEEEEETT-SCEE
T ss_pred ccCcccccccccCCCceEEEEECCCCcEE-Ee--------------e-------cCcceEEECCCCCEEEEEcCC-cEEE
Confidence 123557889999888753 22 1 235677999999 7777766 8999
Q ss_pred EECCCCc
Q 000054 2539 IQLEDYQ 2545 (2548)
Q Consensus 2539 WDL~sg~ 2545 (2548)
||+.++.
T Consensus 633 ~d~~~~~ 639 (1045)
T 1k32_A 633 TFPLEKP 639 (1045)
T ss_dssp EEESSCT
T ss_pred EeCccCc
Confidence 9998765
No 151
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.44 E-value=6.3e-12 Score=150.64 Aligned_cols=229 Identities=7% Similarity=-0.005 Sum_probs=154.3
Q ss_pred EEEEcCCCCEEEEEEC-CCeEEEEEcCCCce-eEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC---cEEEE
Q 000054 2224 AFSSHPLRPFFLVGSS-NTHIYLWEFGKDKA-TATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG---TVCTW 2298 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS~-DGsVrLWDl~tg~~-l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG---tVrVW 2298 (2548)
.++|+|+|+++++++. ++.|.+||..+++. ...+.. +...+.+++|+|+|++++++..++ .|.+|
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~ 113 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE----------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSY 113 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE----------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc----------CCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence 8899999997776555 89999999998886 555432 123444599999999999655553 89999
Q ss_pred EcCCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCe-EEEEECCCCCCCcc---eeeeccCCCeEEEE
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGIN-VVVWDTLAPPTSSR---ASITCHEGGARSIS 2373 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGt-VrIWDl~t~~~k~v---~sl~gHs~~VtSLa 2373 (2548)
|+++++.... +..+.. .-.+++|+|+.+++++ ..++. |.+|++... +... .....+...+..++
T Consensus 114 d~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~~~~--~~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~ 182 (331)
T 3u4y_A 114 SFLKNKFIST--------IPIPYDAVGIAISPNGNGLILID--RSSANTVRRFKIDAD-GVLFDTGQEFISGGTRPFNIT 182 (331)
T ss_dssp ETTTTEEEEE--------EECCTTEEEEEECTTSSCEEEEE--ETTTTEEEEEEECTT-CCEEEEEEEEECSSSSEEEEE
T ss_pred ECCCCCeEEE--------EECCCCccceEECCCCCEEEEEe--cCCCceEEEEEECCC-CcEeecCCccccCCCCccceE
Confidence 9988764322 212221 2235999998666554 25677 999998742 2221 11223456689999
Q ss_pred EccCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCce---eeeecCCCCCCCccccccccCCCCCC--cc-CCCCCceE
Q 000054 2374 VFDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKT---KKHKHSDRGGSSINTCAHADAQTGSG--SK-PGDQNGML 2446 (2548)
Q Consensus 2374 fsP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~---l~tl~~~~~~s~~~~~~vafSpdGk~--v~-s~D~sv~I 2446 (2548)
|+|+ ++ +++++..++.|++|| +.+++. +..+.. ......++++|+|++ +. ..++.+.+
T Consensus 183 ~spd-------g~~l~v~~~~~~~v~v~d---~~~~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~v~~~~~~~i~~ 247 (331)
T 3u4y_A 183 FTPD-------GNFAFVANLIGNSIGILE---TQNPENITLLNAVGT-----NNLPGTIVVSRDGSTVYVLTESTVDVFN 247 (331)
T ss_dssp ECTT-------SSEEEEEETTTTEEEEEE---CSSTTSCEEEEEEEC-----SSCCCCEEECTTSSEEEEECSSEEEEEE
T ss_pred ECCC-------CCEEEEEeCCCCeEEEEE---CCCCcccceeeeccC-----CCCCceEEECCCCCEEEEEEcCCCEEEE
Confidence 9999 66 455666789999999 455665 555421 123356789999995 22 34566788
Q ss_pred EEcccCC--------------CC---CEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCcE
Q 000054 2447 WYIPKAH--------------LG---SVTRISTVPNTSLFLTGSK-DGDVKLWDAKAAQL 2488 (2548)
Q Consensus 2447 wdi~~gH--------------~~---~VtsLafSPdG~~LaSGS~-DGtIrIWDl~Tgel 2488 (2548)
|+...+. .. .+..++|+|+|++|++++. ++.|.+||+.+...
T Consensus 248 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 248 FNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred EECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 8853221 11 2245899999998866655 66999999986554
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.43 E-value=2.9e-12 Score=170.84 Aligned_cols=273 Identities=9% Similarity=-0.016 Sum_probs=168.8
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCcee-EEEeccCCC--CC-----CCCCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 000054 2224 AFSSHPLRPFFLVGSSNTHIYLWEFGKDKAT-ATYGVLPAA--NV-----PPPYALASISALQFDHYGHRFASAALDGTV 2295 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l-~t~~~l~gh--s~-----~~~~H~~~VtsVaFSPdG~~LaSGS~DGtV 2295 (2548)
.+.|. |..+++++.|+ | +||..+++.+ ..+...... .+ ....+...|.+++|+|+ ..++.+ .|+.|
T Consensus 30 ~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i 103 (706)
T 2z3z_A 30 GLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGL 103 (706)
T ss_dssp TCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEE
T ss_pred CCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEE
Confidence 35566 66778888888 8 9999998772 222211100 00 00011256999999999 666655 45999
Q ss_pred EEEEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCC---CCCcceeeeccCCC--
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAP---PTSSRASITCHEGG-- 2368 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~---~~k~v~sl~gHs~~-- 2368 (2548)
.+||+.+++... +..+...+ ..|+|||+.|+++ .|+.|++||+.+. .++.......+...
T Consensus 104 ~~~d~~~~~~~~---------l~~~~~~~~~~~~SpdG~~la~~----~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~ 170 (706)
T 2z3z_A 104 VGFDMLARKVTY---------LFDTNEETASLDFSPVGDRVAYV----RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV 170 (706)
T ss_dssp EEEETTTTEEEE---------EECCTTCCTTCEECTTSSEEEEE----ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE
T ss_pred EEEECCCCceEE---------ccCCcccccCCcCCCCCCEEEEE----ECCeEEEEecCcccccCCCcEEeccCCCCCeE
Confidence 999998775322 12222222 2599999999986 4799999999750 02222222233332
Q ss_pred ------------eEEEEEccCCCCCCCCCCEEEEEe---------------------------------CCCcEEEEeCC
Q 000054 2369 ------------ARSISVFDNDLGSGSVSPLIVTGG---------------------------------KGGDVGIHDFR 2403 (2548)
Q Consensus 2369 ------------VtSLafsP~dlg~gs~g~lLVSGS---------------------------------~DGtVrLWDLR 2403 (2548)
+.++.|+|+ ++.|++++ .++.|++||
T Consensus 171 ~g~~~~~ee~~~~~~~~~SpD-------g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d-- 241 (706)
T 2z3z_A 171 YGQAVHQREFGIEKGTFWSPK-------GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH-- 241 (706)
T ss_dssp ESSCCGGGCTTCCCSEEECTT-------SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE--
T ss_pred cccchhhhhcCCCceEEECCC-------CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE--
Confidence 488999999 78898887 457899999
Q ss_pred ccccCceeeeecCCCCCCCccccccccCCCCCCcc--CCCC-----CceEEEcccC----------CCC---CEEEEEEe
Q 000054 2404 YIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSK--PGDQ-----NGMLWYIPKA----------HLG---SVTRISTV 2463 (2548)
Q Consensus 2404 ~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~--s~D~-----sv~Iwdi~~g----------H~~---~VtsLafS 2463 (2548)
+.+++...... ..........+.|+|||+.+. ..++ .+.+|+...+ +.. .+.+++|+
T Consensus 242 -~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s 318 (706)
T 2z3z_A 242 -LATGKTVYLQT--GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFL 318 (706)
T ss_dssp -TTTTEEEECCC--CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEEC
T ss_pred -CCCCceEeecc--CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceee
Confidence 45555443321 111223345788999999622 2333 6778876443 111 23568999
Q ss_pred C--CCCEEEEEeCCCcEEEEECC-CCcEEEEecccccccccccCcccCCCCceeecEEE-EEEcCCe--EE-EEECCC--
Q 000054 2464 P--NTSLFLTGSKDGDVKLWDAK-AAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD-IQVVSRG--FL-SCGGDG-- 2534 (2548)
Q Consensus 2464 P--dG~~LaSGS~DGtIrIWDl~-Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts-LafSPdG--La-SGS~DG-- 2534 (2548)
| +|+++++++.||.++||++. +++.+..+ .+|... +.+ ++|+|+| |+ +++.++
T Consensus 319 p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l--------------~~~~~~----v~~~~~~spdg~~l~~~~~~~~~~ 380 (706)
T 2z3z_A 319 PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV--------------TKGEWE----VTNFAGFDPKGTRLYFESTEASPL 380 (706)
T ss_dssp TTCSSEEEEEECTTSSCEEEEEETTSCEEEEC--------------CCSSSC----EEEEEEECTTSSEEEEEESSSCTT
T ss_pred cCCCCEEEEEEccCCccEEEEEECCCCEEEec--------------CCCCeE----EEeeeEEcCCCCEEEEEecCCCCc
Confidence 9 99999999999999999886 56666555 334332 333 5899999 54 455554
Q ss_pred --cEEEEECCCCc
Q 000054 2535 --SVKLIQLEDYQ 2545 (2548)
Q Consensus 2535 --tIrIWDL~sg~ 2545 (2548)
.|..||+.++.
T Consensus 381 ~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 381 ERHFYCIDIKGGK 393 (706)
T ss_dssp CBEEEEEETTCCC
T ss_pred eEEEEEEEcCCCC
Confidence 67777776654
No 153
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.42 E-value=3e-12 Score=179.34 Aligned_cols=236 Identities=9% Similarity=0.016 Sum_probs=173.0
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCC-CCCCCCCCCeEEEEEc-cCCCEEEEEeCCCcEEEEEc
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN-VPPPYALASISALQFD-HYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs-~~~~~H~~~VtsVaFS-PdG~~LaSGS~DGtVrVWDl 2300 (2548)
...+|+|+|++++.+ .++.|++||.... .+..+....... .....|...+.+++|+ |+|+++++++ ++.|.+|++
T Consensus 248 ~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 248 YPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp CEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred ceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 345788999999887 5899999998443 333332100000 0001133468999999 9999999988 889999999
Q ss_pred CCCcccccccCccceeccCCcc-cEE--EEcCCCCEEEEEeccCCCCeEE-EEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAM-DVS--YITSSGSVIAAAGHSSNGINVV-VWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~-~V~--afSpdGslLATgG~SS~DGtVr-IWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
..+.... +..|.. .+. .|+ +|+.+++++ .++.+. +||+.. .+ ...+.+|...+..++|+|
T Consensus 325 ~~~~~~~---------~~~~~~~~~~~~~~s-dg~~l~~~s---~~~~l~~~~d~~~--~~-~~~l~~~~~~~~~~~~Sp 388 (1045)
T 1k32_A 325 SGTYVLK---------VPEPLRIRYVRRGGD-TKVAFIHGT---REGDFLGIYDYRT--GK-AEKFEENLGNVFAMGVDR 388 (1045)
T ss_dssp TSSBEEE---------CSCCSCEEEEEECSS-SEEEEEEEE---TTEEEEEEEETTT--CC-EEECCCCCCSEEEEEECT
T ss_pred CCCceEE---------ccCCCcceEEeeeEc-CCCeEEEEE---CCCceEEEEECCC--CC-ceEecCCccceeeeEECC
Confidence 8664221 334444 444 378 999999886 677888 889865 23 334447888999999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCC
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS 2456 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~ 2456 (2548)
+ ++.|++++.++.|++|| +.+++..... .+|.+.
T Consensus 389 D-------G~~la~~~~~~~v~~~d---~~tg~~~~~~------------------------------------~~~~~~ 422 (1045)
T 1k32_A 389 N-------GKFAVVANDRFEIMTVD---LETGKPTVIE------------------------------------RSREAM 422 (1045)
T ss_dssp T-------SSEEEEEETTSEEEEEE---TTTCCEEEEE------------------------------------ECSSSC
T ss_pred C-------CCEEEEECCCCeEEEEE---CCCCceEEec------------------------------------cCCCCC
Confidence 9 78999999999999999 5556654443 468888
Q ss_pred EEEEEEeCCCCEEEEEeCCC----------cEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000054 2457 VTRISTVPNTSLFLTGSKDG----------DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2457 VtsLafSPdG~~LaSGS~DG----------tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
|.+++|+|+|++|++++.++ .|++||+.+++ +..+ .+|... +..++|+|+|
T Consensus 423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l--------------~~~~~~----~~~~~~spdG 483 (1045)
T 1k32_A 423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA--------------TTENSH----DYAPAFDADS 483 (1045)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC--------------SCSSSB----EEEEEECTTS
T ss_pred ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe--------------eCCCcc----cCCceEcCCC
Confidence 99999999999999887754 99999999887 4333 344432 3557999999
Q ss_pred --EEEEECCCcEEEEECC
Q 000054 2527 --FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2527 --LaSGS~DGtIrIWDL~ 2542 (2548)
|++++.++..++|+..
T Consensus 484 ~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 484 KNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CEEEEEESCCCCCEECSS
T ss_pred CEEEEEecccCCcCcchh
Confidence 8888988888888754
No 154
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.41 E-value=1e-11 Score=153.10 Aligned_cols=254 Identities=8% Similarity=-0.006 Sum_probs=159.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcC-CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCE--EEEEe---------
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFG-KDKATATYGVLPAANVPPPYALASISALQFDHYGHR--FASAA--------- 2290 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~-tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~--LaSGS--------- 2290 (2548)
..++|+|+|++|++++.+ .|.+|++. +++....... ..+ +.+.+++|+|+|++ +++++
T Consensus 43 ~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~-~~~--------g~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 112 (365)
T 1jof_A 43 SWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH-PIG--------GHPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp SEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE-ECC--------SSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred cEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe-ecC--------CCCccEEECCCCCEEEEEEecCCcceeccc
Confidence 568899999999998888 99999997 7765443221 110 22445889999994 45553
Q ss_pred ----CCCcEEEEEcCC-CcccccccCccceecc-CCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECC-CCCCCccee
Q 000054 2291 ----LDGTVCTWQLEV-GGRSNVRPMESCLCFS-SHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTL-APPTSSRAS 2361 (2548)
Q Consensus 2291 ----~DGtVrVWDl~t-gk~i~i~p~~s~~t~~-gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~-t~~~k~v~s 2361 (2548)
.+|++.+|+++. ++.... ...+. .+...+. .++|+|++++++. ..++.|++||+. ++....+..
T Consensus 113 ~~~~~~g~v~v~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~spdG~~l~~~~--~~~~~v~~~~~~~~g~~~~~~~ 185 (365)
T 1jof_A 113 PFYKFAGYGNVFSVSETGKLEKN-----VQNYEYQENTGIHGMVFDPTETYLYSAD--LTANKLWTHRKLASGEVELVGS 185 (365)
T ss_dssp EESSSCCEEEEEEECTTCCEEEE-----EEEEECCTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTSCEEEEEE
T ss_pred eeecCCceEEEEccCCCCcCcce-----EeeEEeCCCCcceEEEECCCCCEEEEEc--CCCCEEEEEEECCCCCEEEeee
Confidence 689999999974 432111 11110 1222232 4899999888765 246899999997 321112233
Q ss_pred ee--ccCCCeEEEEEccCCCCCCCCCCEEEEEe-CCCcEEEEeCCccccCceee---eecCCCCCCCccccccccCCCCC
Q 000054 2362 IT--CHEGGARSISVFDNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKK---HKHSDRGGSSINTCAHADAQTGS 2435 (2548)
Q Consensus 2362 l~--gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~---tl~~~~~~s~~~~~~vafSpdGk 2435 (2548)
+. .|...+..++|+|+ ++++++++ .++.|.+|++. ..+++... .+.. .+.+
T Consensus 186 ~~~~~~g~~p~~~~~spd-------g~~l~v~~~~~~~v~v~~~~-~~~g~~~~~~~~~~~--------------~~~~- 242 (365)
T 1jof_A 186 VDAPDPGDHPRWVAMHPT-------GNYLYALMEAGNRICEYVID-PATHMPVYTHHSFPL--------------IPPG- 242 (365)
T ss_dssp EECSSTTCCEEEEEECTT-------SSEEEEEETTTTEEEEEEEC-TTTCCEEEEEEEEES--------------SCTT-
T ss_pred EecCCCCCCCCEeEECCC-------CCEEEEEECCCCeEEEEEEe-CCCCcEEEccceEEc--------------CCCC-
Confidence 33 24677999999999 67777766 47899999854 23454321 1100 0000
Q ss_pred CccCCCCCceEEEcccCCCC------CEEEEE-EeCCCCEEEEEeCCC------cEEEEECC-CCcEEEEeccccccccc
Q 000054 2436 GSKPGDQNGMLWYIPKAHLG------SVTRIS-TVPNTSLFLTGSKDG------DVKLWDAK-AAQLVYHWSKLHERHTF 2501 (2548)
Q Consensus 2436 ~v~s~D~sv~Iwdi~~gH~~------~VtsLa-fSPdG~~LaSGS~DG------tIrIWDl~-Tgell~tL~~~Hs~hsf 2501 (2548)
..+|.. .+..++ |+|+|++|++++.+. .|.+|++. ++++......
T Consensus 243 --------------~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~------- 301 (365)
T 1jof_A 243 --------------IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL------- 301 (365)
T ss_dssp --------------CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE-------
T ss_pred --------------cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee-------
Confidence 012332 578999 999999988776432 89999996 6765432100
Q ss_pred ccCcccCCCCceeecEEEEEEcC---Ce--EEEEEC-CCcEEEEECCCCc
Q 000054 2502 LQPSSRGFGGVVRAGVTDIQVVS---RG--FLSCGG-DGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2502 l~~tl~GH~~~V~a~VtsLafSP---dG--LaSGS~-DGtIrIWDL~sg~ 2545 (2548)
...+... +..++|+| +| |++++. +++|++|+++.+.
T Consensus 302 ----~~~~~~~----~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 302 ----SPTPTSG----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp ----EECSSCC----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred ----eecCCCC----cccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 0111111 12347999 67 666665 5899999987653
No 155
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.40 E-value=6.6e-12 Score=169.57 Aligned_cols=272 Identities=8% Similarity=-0.014 Sum_probs=169.2
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---------C
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---------G 2293 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---------G 2293 (2548)
..++|+|+|.+++++ ||+|++||+.+++....+..... ..+.....++.|||||++++.++.+ +
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF-----DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT-----TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhh-----hhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 568999999999886 99999999999987666543211 1112234568999999999999887 5
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-eeeccCCCe-
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGGA- 2369 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-sl~gHs~~V- 2369 (2548)
.+.+||+.+++... +..|...+. .|||||+.||.+ .|+.|++||+..+ +..+ +..++...+
T Consensus 93 ~~~~~d~~~~~~~~---------l~~~~~~~~~~~~SPdG~~la~~----~~~~i~~~~~~~~--~~~~lt~~g~~~~~~ 157 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT---------EERIPNNTQWVTWSPVGHKLAYV----WNNDIYVKIEPNL--PSYRITWTGKEDIIY 157 (740)
T ss_dssp EEEEEETTTTEECC---------SSCCCTTEEEEEECSSTTCEEEE----ETTEEEEESSTTS--CCEECCSCCBTTTEE
T ss_pred EEEEEECCCCcEEE---------cccCCCcceeeEECCCCCEEEEE----ECCeEEEEECCCC--ceEEEcCCCCcccee
Confidence 66799999886332 333444444 499999999987 4789999998753 2221 222333222
Q ss_pred ----------------EEEEEccCCCCCCCCCCEEEEEeCCCc-EEEEeCCccccCceeeeecCCCCCCCccccccccCC
Q 000054 2370 ----------------RSISVFDNDLGSGSVSPLIVTGGKGGD-VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ 2432 (2548)
Q Consensus 2370 ----------------tSLafsP~dlg~gs~g~lLVSGS~DGt-VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp 2432 (2548)
..+.|+|+ |+.|+.++.|.+ |++|++....... ........+.+..
T Consensus 158 ~g~~~~v~~ee~~~~~~~~~wSpD-------g~~la~~~~d~~~v~~~~~~~~~~~~----------~~~~~~~~~~yp~ 220 (740)
T 4a5s_A 158 NGITDWVYEEEVFSAYSALWWSPN-------GTFLAYAQFNDTEVPLIEYSFYSDES----------LQYPKTVRVPYPK 220 (740)
T ss_dssp ESBCCHHHHHHTSSSSBCEEECTT-------SSEEEEEEEECTTCCEEEEEECCSTT----------CSSCEEEEEECCB
T ss_pred cCcccccccchhcCCCcceEECCC-------CCEEEEEEEcccCCceEEEEeecCCC----------CCCCcceeecCCC
Confidence 35899999 788888876554 9999853211110 0001111223333
Q ss_pred CCCCccCCCCCceEEEccc-------------------CCCCCEEEEEEeCCCCEEEEEeC----CCcEEEEECCCCc--
Q 000054 2433 TGSGSKPGDQNGMLWYIPK-------------------AHLGSVTRISTVPNTSLFLTGSK----DGDVKLWDAKAAQ-- 2487 (2548)
Q Consensus 2433 dGk~v~s~D~sv~Iwdi~~-------------------gH~~~VtsLafSPdG~~LaSGS~----DGtIrIWDl~Tge-- 2487 (2548)
.|.. .....+++|++.. +|...+..++|+|||+.++.... +..|++||+.+|+
T Consensus 221 ~G~~--~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~ 298 (740)
T 4a5s_A 221 AGAV--NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR 298 (740)
T ss_dssp TTSC--CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE
T ss_pred CcCc--CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccc
Confidence 3321 1111344555433 27778999999999997666533 3479999999887
Q ss_pred --EEEEecccccccccccCcccCCCCceee-cEEEEEEcCCe--EE-EEEC-C--CcEEEEECCCCc
Q 000054 2488 --LVYHWSKLHERHTFLQPSSRGFGGVVRA-GVTDIQVVSRG--FL-SCGG-D--GSVKLIQLEDYQ 2545 (2548)
Q Consensus 2488 --ll~tL~~~Hs~hsfl~~tl~GH~~~V~a-~VtsLafSPdG--La-SGS~-D--GtIrIWDL~sg~ 2545 (2548)
+..... + .-.+|.+.+.. .....+|+||| |+ ..+. + ..|++|+++++.
T Consensus 299 ~~~~~~~~-------l---~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 299 WNCLVARQ-------H---IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EEECGGGC-------E---EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred cceeEEEE-------e---eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 221110 0 00334444420 01234799999 55 5553 3 468888887764
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.39 E-value=1.5e-12 Score=174.13 Aligned_cols=271 Identities=10% Similarity=0.004 Sum_probs=162.1
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC---------CC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---------DG 2293 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~---------DG 2293 (2548)
..++|+|+|.+++ .+.|++|++||..+++....+..... ....|.+++|+|||++|++++. |+
T Consensus 19 ~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 19 FFPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTM-------KSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp CCCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHH-------HTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred CccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccc-------cccceeeEEECCCCCeEEEEecCceeEEeecce
Confidence 3568899996555 45799999999999987666532110 0024889999999999999876 79
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee-eeccCCCe---
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS-ITCHEGGA--- 2369 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s-l~gHs~~V--- 2369 (2548)
.|++||+.+++.....+ +... ..-.+|+|||+.|+.+ .++.|++||+.++ +.... ..++...|
T Consensus 91 ~i~~~d~~~g~~~~~~~------l~~~-~~~~~~SPDG~~la~~----~~~~i~~~~~~~g--~~~~l~~~~~~~~v~~g 157 (719)
T 1z68_A 91 TYYIYDLSNGEFVRGNE------LPRP-IQYLCWSPVGSKLAYV----YQNNIYLKQRPGD--PPFQITFNGRENKIFNG 157 (719)
T ss_dssp EEEEEETTTTEECCSSC------CCSS-BCCEEECSSTTCEEEE----ETTEEEEESSTTS--CCEECCCCCBTTTEEES
T ss_pred EEEEEECCCCcccccee------cCcc-cccceECCCCCEEEEE----ECCeEEEEeCCCC--CcEEEecCCCcCCeEcc
Confidence 99999999886421111 1111 1223599999999997 4789999999753 33221 12333222
Q ss_pred --------------EEEEEccCCCCCCCCCCEEEEEeCC-CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCC
Q 000054 2370 --------------RSISVFDNDLGSGSVSPLIVTGGKG-GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTG 2434 (2548)
Q Consensus 2370 --------------tSLafsP~dlg~gs~g~lLVSGS~D-GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdG 2434 (2548)
.++.|+|+ |+.|++++.| +.+.+|.+...... .......+.+...|
T Consensus 158 ~~~~v~~ee~~~~~~~~~wSPD-------G~~la~~~~d~~~~~~~~~~~~~~~------------~~~~~~~~~yp~~g 218 (719)
T 1z68_A 158 IPDWVYEEEMLATKYALWWSPN-------GKFLAYAEFNDTDIPVIAYSYYGDE------------QYPRTINIPYPKAG 218 (719)
T ss_dssp SCCHHHHHHTTCSSCCEEECTT-------SSEEEEEEEECTTSCEEEEEECCSS------------SSCEEEEEECCBTT
T ss_pred cccceeeeecccCcccEEECCC-------CCEEEEEEECCCCCceEEeeccCCC------------CCccceeecCCCCC
Confidence 48999999 7899988765 45555543211100 00001111122222
Q ss_pred CCccCCCCCceEEEcc----------------cCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEE----CCCCcEEE
Q 000054 2435 SGSKPGDQNGMLWYIP----------------KAHLGSVTRISTVPNTSLFLTGSKD----GDVKLWD----AKAAQLVY 2490 (2548)
Q Consensus 2435 k~v~s~D~sv~Iwdi~----------------~gH~~~VtsLafSPdG~~LaSGS~D----GtIrIWD----l~Tgell~ 2490 (2548)
.. .....+++|++. .+|...+.+++|+||++++++.... ..|.+|| +.+++...
T Consensus 219 ~~--~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 219 AK--NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp SC--CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CC--CCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 11 112234555532 2477789999999999888875433 2488899 77776442
Q ss_pred EecccccccccccCcccCCCCceee-cEEEEEEcCCe--EE--EEECCC--cEEEEECCCCc
Q 000054 2491 HWSKLHERHTFLQPSSRGFGGVVRA-GVTDIQVVSRG--FL--SCGGDG--SVKLIQLEDYQ 2545 (2548)
Q Consensus 2491 tL~~~Hs~hsfl~~tl~GH~~~V~a-~VtsLafSPdG--La--SGS~DG--tIrIWDL~sg~ 2545 (2548)
.+.. ...+|.+.+.. ....++|+||| ++ ++..|| .|.+|++.++.
T Consensus 297 ~~~~----------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 297 TQEH----------IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp GGEE----------EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred EEec----------ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 1100 00244444430 00134899999 44 344566 56666766543
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.36 E-value=7.3e-11 Score=143.08 Aligned_cols=218 Identities=9% Similarity=0.065 Sum_probs=139.7
Q ss_pred EEEEEcCCCCEEEEEE-CCCeEEEEEcCCCceeEEEeccC--CCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2223 RAFSSHPLRPFFLVGS-SNTHIYLWEFGKDKATATYGVLP--AANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS-~DGsVrLWDl~tg~~l~t~~~l~--ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
..++|+|+|++|++++ .++.|++|++........+.... +.......+...+.+++|+|+|+.+++...++.|.+|+
T Consensus 89 ~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 89 AYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN 168 (347)
T ss_dssp SEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence 5678889999988887 78999999996322222222111 10000111234689999999999666667789999999
Q ss_pred cC-CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc--ceeeeccC------CCeE
Q 000054 2300 LE-VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASITCHE------GGAR 2370 (2548)
Q Consensus 2300 l~-tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~--v~sl~gHs------~~Vt 2370 (2548)
+. ++...... ......+....-.+|+|+|+++++++ ..++.|.+|++....++. +..+.... ..+.
T Consensus 169 ~~~~g~~~~~~---~~~~~~g~~p~~~~~spdg~~l~v~~--~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 243 (347)
T 3hfq_A 169 VSDAGQLSEQS---VLTMEAGFGPRHLVFSPDGQYAFLAG--ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAA 243 (347)
T ss_dssp ECTTSCEEEEE---EEECCTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEE
T ss_pred ECCCCcEEEee---eEEcCCCCCCceEEECCCCCEEEEEe--CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcce
Confidence 98 33211110 00001111111236999999777765 378999999987422322 22333222 3588
Q ss_pred EEEEccCCCCCCCCCCEE-EEEeCCCcEEEEeCCccccC--ceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000054 2371 SISVFDNDLGSGSVSPLI-VTGGKGGDVGIHDFRYIATG--KTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lL-VSGS~DGtVrLWDLR~l~TG--k~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
.++|+|+ +++| +++..++.|.+||+.. .+ +.+..+
T Consensus 244 ~i~~spd-------G~~l~v~~~~~~~v~v~~~~~--~g~~~~~~~~--------------------------------- 281 (347)
T 3hfq_A 244 AIRLSHD-------GHFLYVSNRGYNTLAVFAVTA--DGHLTLIQQI--------------------------------- 281 (347)
T ss_dssp EEEECTT-------SCEEEEEEETTTEEEEEEECG--GGCEEEEEEE---------------------------------
T ss_pred eEEECCC-------CCEEEEEeCCCCEEEEEEECC--CCcEEEeEEE---------------------------------
Confidence 9999999 6655 6677799999999541 22 111111
Q ss_pred EcccCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEE--ECCCCcEEE
Q 000054 2448 YIPKAHLGSVTRISTVPNTSLFLTGSK-DGDVKLW--DAKAAQLVY 2490 (2548)
Q Consensus 2448 di~~gH~~~VtsLafSPdG~~LaSGS~-DGtIrIW--Dl~Tgell~ 2490 (2548)
..+...+..++|+|+|++|++++. ++.|.+| |..+|++..
T Consensus 282 ---~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 282 ---STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp ---ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred ---ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 334556789999999999888876 4899999 556777653
No 158
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.33 E-value=6e-10 Score=131.55 Aligned_cols=242 Identities=9% Similarity=0.137 Sum_probs=166.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEE-ccCCCEEEEEeC-CCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQF-DHYGHRFASAAL-DGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaF-SPdG~~LaSGS~-DGtVrVWD 2299 (2548)
..+++++++|.++++...++.|++||.. ++.+..+.... ....+...+..+++ .++++.+++... ++.|.+||
T Consensus 32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~----~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG----KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS----SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred CceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC----CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 4788888999999988899999999977 55555553211 11234567899999 467776666543 89999999
Q ss_pred cCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee--ccCCCeEEEEEc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT--CHEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~--gHs~~VtSLafs 2375 (2548)
. +++..... ...+...+ .+++++|+++++.. .++.|.+||.. ++.+..+. .+...+.+++++
T Consensus 107 ~-~g~~~~~~-------~~~~~~~~~~i~~~~~g~l~v~~~---~~~~i~~~~~~---g~~~~~~~~~~~~~~p~~i~~~ 172 (286)
T 1q7f_A 107 Q-YGQFVRKF-------GATILQHPRGVTVDNKGRIIVVEC---KVMRVIIFDQN---GNVLHKFGCSKHLEFPNGVVVN 172 (286)
T ss_dssp T-TSCEEEEE-------CTTTCSCEEEEEECTTSCEEEEET---TTTEEEEECTT---SCEEEEEECTTTCSSEEEEEEC
T ss_pred C-CCcEEEEe-------cCccCCCceEEEEeCCCCEEEEEC---CCCEEEEEcCC---CCEEEEeCCCCccCCcEEEEEC
Confidence 4 44322111 01122222 24789998777753 67899999964 34444443 345678999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
++ +.++++...++.|++||. .++.+..+. ..++..
T Consensus 173 ~~-------g~l~v~~~~~~~i~~~~~----~g~~~~~~~----------------------------------~~g~~~ 207 (286)
T 1q7f_A 173 DK-------QEIFISDNRAHCVKVFNY----EGQYLRQIG----------------------------------GEGITN 207 (286)
T ss_dssp SS-------SEEEEEEGGGTEEEEEET----TCCEEEEES----------------------------------CTTTSC
T ss_pred CC-------CCEEEEECCCCEEEEEcC----CCCEEEEEc----------------------------------cCCccC
Confidence 98 668888888999999994 234444430 012345
Q ss_pred CEEEEEEeCCCCEEEEEeCCC-cEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECC
Q 000054 2456 SVTRISTVPNTSLFLTGSKDG-DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGD 2533 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DG-tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~D 2533 (2548)
.+..++++|+|+++++...++ .|.+||. +++.+.++. .+... ..+.+++++|+| ++.++.|
T Consensus 208 ~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~--------------~~~~~--~~~~~i~~~~~g~l~vs~~~ 270 (286)
T 1q7f_A 208 YPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE--------------SKVKH--AQCFDVALMDDGSVVLASKD 270 (286)
T ss_dssp SEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE--------------ESSCC--SCEEEEEEETTTEEEEEETT
T ss_pred CCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEc--------------ccCCC--CcceeEEECCCCcEEEECCC
Confidence 778999999999999988886 9999995 577776662 11110 124678999999 5544789
Q ss_pred CcEEEEECCCC
Q 000054 2534 GSVKLIQLEDY 2544 (2548)
Q Consensus 2534 GtIrIWDL~sg 2544 (2548)
++|++|++...
T Consensus 271 ~~v~v~~~~~~ 281 (286)
T 1q7f_A 271 YRLYIYRYVQL 281 (286)
T ss_dssp TEEEEEECSCC
T ss_pred CeEEEEEcccc
Confidence 99999998654
No 159
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.33 E-value=2.7e-10 Score=138.74 Aligned_cols=251 Identities=11% Similarity=0.072 Sum_probs=172.8
Q ss_pred EEEEEEcCCCCEEEEEECC------------------------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSN------------------------THIYLWEFGKDKATATYGVLPAANVPPPYALASISAL 2277 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D------------------------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsV 2277 (2548)
+.+++++|+|+++++...+ +.|.+||..+++....+.. .+......+
T Consensus 26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------~~~~~p~gi 96 (329)
T 3fvz_A 26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK---------NLFYLPHGL 96 (329)
T ss_dssp EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT---------TTCSSEEEE
T ss_pred ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC---------CccCCceEE
Confidence 4888999999999988777 4799999998887665431 234678999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCc-ccccc-cCccceeccCCcccE--EEEcC-CCCEEEEEeccCCCCeEEEEECC
Q 000054 2278 QFDHYGHRFASAALDGTVCTWQLEVGG-RSNVR-PMESCLCFSSHAMDV--SYITS-SGSVIAAAGHSSNGINVVVWDTL 2352 (2548)
Q Consensus 2278 aFSPdG~~LaSGS~DGtVrVWDl~tgk-~i~i~-p~~s~~t~~gH~~~V--~afSp-dGslLATgG~SS~DGtVrIWDl~ 2352 (2548)
+++++|+.+++...++.|++||..... ..... .....-.-.++.... .+++| ++.++++.+. .++.|++||..
T Consensus 97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~--~~~~I~~~~~~ 174 (329)
T 3fvz_A 97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY--CNSRIVQFSPS 174 (329)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS--SCCEEEEECTT
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC--CCCeEEEEcCC
Confidence 999999988888889999999986431 11100 000000001222222 25888 7888777621 47899999953
Q ss_pred CCCCCcceeeecc----------CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCC
Q 000054 2353 APPTSSRASITCH----------EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS 2422 (2548)
Q Consensus 2353 t~~~k~v~sl~gH----------s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~ 2422 (2548)
++.+..+... -.....++++|+. +.++++...++.|++|| ..+|+.+..+..
T Consensus 175 ---g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~------g~l~v~d~~~~~I~~~~---~~~G~~~~~~~~------ 236 (329)
T 3fvz_A 175 ---GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL------DQLCVADRENGRIQCFK---TDTKEFVREIKH------ 236 (329)
T ss_dssp ---SCEEEEECEECCSSSCCTTEESCEEEEEEETTT------TEEEEEETTTTEEEEEE---TTTCCEEEEECC------
T ss_pred ---CCEEEEeccCCCCCCCCCcccCCCcEEEEECCC------CEEEEEECCCCEEEEEE---CCCCcEEEEEec------
Confidence 4555555322 2348999999974 66888888899999999 556777666510
Q ss_pred ccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC------CCCEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000054 2423 INTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP------NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2423 ~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP------dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
..+...+.+++++| +|+..++.+.+..|++||..+++.+.++..
T Consensus 237 ----------------------------~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~-- 286 (329)
T 3fvz_A 237 ----------------------------ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP-- 286 (329)
T ss_dssp ----------------------------TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC--
T ss_pred ----------------------------cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC--
Confidence 23556777888888 333333334456999999999999987720
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
..++. ..+.+++++|+| +++...+++|++|+++..
T Consensus 287 ---------~~~~~----~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 287 ---------VRKHF----DMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp ---------SSSCC----SSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred ---------CCCcc----CCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 01222 235678999999 678888999999998653
No 160
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.32 E-value=3.5e-11 Score=143.22 Aligned_cols=198 Identities=12% Similarity=0.065 Sum_probs=145.1
Q ss_pred EEEEEcCCCCEEEEEE------------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000054 2223 RAFSSHPLRPFFLVGS------------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS------------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
..++|+|+|+++++++ .++.|.+||..+++....+.. ...+.+++|+|+|++++++
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~~~~~~s~dg~~l~~~- 152 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----------PRQITMLAWARDGSKLYGL- 152 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----------CSSCCCEEECTTSSCEEEE-
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-----------CCCcceeEECCCCCEEEEe-
Confidence 4577889999998876 679999999999887776642 1347788999999988888
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCC-----------------------eEE
Q 000054 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI-----------------------NVV 2347 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DG-----------------------tVr 2347 (2548)
++.|.+||+.+++.....+ ...+...+ .++|+|..++.++ ..++ .|.
T Consensus 153 -~~~i~~~d~~~~~~~~~~~------~~~~~~~~-~~s~dg~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 222 (337)
T 1pby_B 153 -GRDLHVMDPEAGTLVEDKP------IQSWEAET-YAQPDVLAVWNQH--ESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp -SSSEEEEETTTTEEEEEEC------STTTTTTT-BCCCBCCCCCCCC--TTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred -CCeEEEEECCCCcEeeeee------ccccCCCc-eeCCCccEEeeec--cCCCceeeeeeccccccccccccccccceE
Confidence 6899999998875432211 11111122 4677877665543 1222 478
Q ss_pred EEECCCCCCCc-ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2348 VWDTLAPPTSS-RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2348 IWDl~t~~~k~-v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
+||+.+. +. ...+..+...+.+++|+|+ ++.++++ ++.|.+|| +.+++.+..+
T Consensus 223 ~~d~~~~--~~~~~~~~~~~~~~~~~~~s~d-------g~~l~~~--~~~v~~~d---~~~~~~~~~~------------ 276 (337)
T 1pby_B 223 TMDLETG--EMAMREVRIMDVFYFSTAVNPA-------KTRAFGA--YNVLESFD---LEKNASIKRV------------ 276 (337)
T ss_dssp EEETTTC--CEEEEEEEECSSCEEEEEECTT-------SSEEEEE--ESEEEEEE---TTTTEEEEEE------------
T ss_pred EEeCCCC--CceEeecCCCCCceeeEEECCC-------CCEEEEe--CCeEEEEE---CCCCcCccee------------
Confidence 9999763 33 3344567778899999998 6788877 79999999 4556655443
Q ss_pred ccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2427 AHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2427 ~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
. ....+.+++|+|+|++|++++.|+.|++||+.+++.+..++
T Consensus 277 ------------------------~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 277 ------------------------P-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp ------------------------E-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred ------------------------c-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 1 12356789999999999999999999999999999998874
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.31 E-value=6.7e-11 Score=144.99 Aligned_cols=276 Identities=10% Similarity=-0.041 Sum_probs=166.0
Q ss_pred EEEcCCCCEEEEEEC-CC--eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2225 FSSHPLRPFFLVGSS-NT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2225 VsfSPdG~~LASGS~-DG--sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
.+|+|||++|+.++. +| .|.+||..+++...... .+...+..+.|+|||+.|+.++.++.|.+||+.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~----------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~ 110 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE----------GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLA 110 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC----------SSCBCSSSCEECTTSSEEEEEETTTEEEEEETT
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee----------CCCCCccceEEcCCCCEEEEEeCCCeEEEEECC
Confidence 568899999998877 67 48888988877544321 122344467899999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccE----EEEcCCCCEEEEEec-------------------cCCCCeEEEEECCCCCCCc
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDV----SYITSSGSVIAAAGH-------------------SSNGINVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V----~afSpdGslLATgG~-------------------SS~DGtVrIWDl~t~~~k~ 2358 (2548)
+++...+ ...+...+ ..+++++++++.... ...+..|.+||+.+ + .
T Consensus 111 ~g~~~~~--------~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~--g-~ 179 (388)
T 3pe7_A 111 TLEENVV--------YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT--G-E 179 (388)
T ss_dssp TCCEEEE--------EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT--C-C
T ss_pred CCcceee--------eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC--C-c
Confidence 8764322 22222222 125899998874310 01457899999976 3 3
Q ss_pred ceeeeccCCCeEEEEEcc-CCCCCCCCCCEEEEEeCC------CcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000054 2359 RASITCHEGGARSISVFD-NDLGSGSVSPLIVTGGKG------GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2359 v~sl~gHs~~VtSLafsP-~dlg~gs~g~lLVSGS~D------GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
...+..+...+..+.|+| + +..|+....+ ..|.++|. ..+.. ..+.. ...........|+
T Consensus 180 ~~~l~~~~~~~~~~~~sp~d-------g~~l~~~~~~~~~~~~~~l~~~d~---~~~~~-~~l~~--~~~~~~~~~~~~s 246 (388)
T 3pe7_A 180 STVILQENQWLGHPIYRPYD-------DSTVAFCHEGPHDLVDARMWLINE---DGTNM-RKVKT--HAEGESCTHEFWV 246 (388)
T ss_dssp EEEEEEESSCEEEEEEETTE-------EEEEEEEECSCTTTSSCSEEEEET---TSCCC-EESCC--CCTTEEEEEEEEC
T ss_pred eEEeecCCccccccEECCCC-------CCEEEEEEecCCCCCcceEEEEeC---CCCce-EEeee--CCCCcccccceEC
Confidence 445556777899999999 7 6677776653 36777773 33332 22211 1111123356799
Q ss_pred CCCCCccC-----CCC--CceEEEcccCCCCCEE-------------EEEEeCCCCEEEEE---------eCCCcEEEEE
Q 000054 2432 QTGSGSKP-----GDQ--NGMLWYIPKAHLGSVT-------------RISTVPNTSLFLTG---------SKDGDVKLWD 2482 (2548)
Q Consensus 2432 pdGk~v~s-----~D~--sv~Iwdi~~gH~~~Vt-------------sLafSPdG~~LaSG---------S~DGtIrIWD 2482 (2548)
|||+.++. ... .+++|++..+....+. .++|+|+|+.|+.. ..+..|++||
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 99996321 112 2778876443221111 12689999887754 4567999999
Q ss_pred CCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE-EEECCCcEEEEECC
Q 000054 2483 AKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL-SCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2483 l~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La-SGS~DGtIrIWDL~ 2542 (2548)
+.+++... +.. +.. .. ..+.+... ..+.+++|+||| |+ ++..+|...+|.++
T Consensus 327 ~~~~~~~~-l~~-~~~-~~--~~~~~~~~---~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 327 MKNGTQHR-VAR-HDT-SW--KVFEGDRQ---VTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp TTTTEEEE-EEE-CCC-CC--CCBTTBSS---TTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccCCceEE-ecc-ccC-cc--cccccccc---cCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 99887643 310 100 00 00000000 013445899999 55 44457777777653
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.30 E-value=4.7e-11 Score=159.65 Aligned_cols=283 Identities=12% Similarity=0.059 Sum_probs=173.3
Q ss_pred EEEEEEcCCCCEEEEEEC---------CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2222 TRAFSSHPLRPFFLVGSS---------NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~---------DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
+.+++|+|||++|++++. ++.|++||+.+++.+.... + ...+..++|+|||+.|+++. |
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l----------~~~~~~~~~SPDG~~la~~~-~ 129 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-L----------PRPIQYLCWSPVGSKLAYVY-Q 129 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-C----------CSSBCCEEECSSTTCEEEEE-T
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-c----------CcccccceECCCCCEEEEEE-C
Confidence 368899999999998876 7899999999887521110 0 14588899999999999986 7
Q ss_pred CcEEEEEcCCCcccccccCc-cceeccCCccc-----------EEEEcCCCCEEEEEeccCCC-----------------
Q 000054 2293 GTVCTWQLEVGGRSNVRPME-SCLCFSSHAMD-----------VSYITSSGSVIAAAGHSSNG----------------- 2343 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~-s~~t~~gH~~~-----------V~afSpdGslLATgG~SS~D----------------- 2343 (2548)
+.|++||+.+++...+.... ....+.++... -.+|+|||+.|+++.. ++
T Consensus 130 ~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~--d~~~~~~~~~~~~~~~~~~ 207 (719)
T 1z68_A 130 NNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF--NDTDIPVIAYSYYGDEQYP 207 (719)
T ss_dssp TEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE--ECTTSCEEEEEECCSSSSC
T ss_pred CeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEE--CCCCCceEEeeccCCCCCc
Confidence 89999999887643321100 01112233221 2469999999998752 11
Q ss_pred ----------------CeEEEEECCCCCCCcc--------eeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCC----C
Q 000054 2344 ----------------INVVVWDTLAPPTSSR--------ASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKG----G 2395 (2548)
Q Consensus 2344 ----------------GtVrIWDl~t~~~k~v--------~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~D----G 2395 (2548)
..|++||+.. ++.. ..+.+|...+.+++|+|+ +.++++.... .
T Consensus 208 ~~~~~~yp~~g~~~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD-------~~~~~~~~~~~~~~~ 278 (719)
T 1z68_A 208 RTINIPYPKAGAKNPVVRIFIIDTTY--PAYVGPQEVPVPAMIASSDYYFSWLTWVTD-------ERVCLQWLKRVQNVS 278 (719)
T ss_dssp EEEEEECCBTTSCCCEEEEEEEESSC--HHHHCCEECCCCHHHHTSCEEEEEEEESSS-------SEEEEEEEESSTTEE
T ss_pred cceeecCCCCCCCCCeeEEEEEECCC--CCccceeEccCCccCCCCcceEEEeEEeCC-------CeEEEEEeccccCeE
Confidence 1788999975 2221 223468888999999999 5666664432 2
Q ss_pred cEEEEe----CCccccCceeeeec--CCCCCCCcc---ccccccCCCCCCc----cCCCCC--ceEEEcc-------cCC
Q 000054 2396 DVGIHD----FRYIATGKTKKHKH--SDRGGSSIN---TCAHADAQTGSGS----KPGDQN--GMLWYIP-------KAH 2453 (2548)
Q Consensus 2396 tVrLWD----LR~l~TGk~l~tl~--~~~~~s~~~---~~~vafSpdGk~v----~s~D~s--v~Iwdi~-------~gH 2453 (2548)
.|.+|| +. ++++...+. ......... .....|+|||+.+ ...++. +.+|+.. ..+
T Consensus 279 ~l~~~d~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~ 355 (719)
T 1z68_A 279 VLSICDFREDWQ---TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSG 355 (719)
T ss_dssp EEEEEEECSSSS---SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCS
T ss_pred EEEEEcccCCCC---CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccC
Confidence 488888 43 233322210 000001011 1256799999852 223443 4444432 234
Q ss_pred CCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCC--CcE-EEEecccccccccccCcccCCCCceeecEEEEEEcCC
Q 000054 2454 LGSVTRISTVPNTSLFLTGSKD-----GDVKLWDAKA--AQL-VYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR 2525 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~D-----GtIrIWDl~T--gel-l~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd 2525 (2548)
...|..+.+. +++.++..+.+ +.+++|.+.. +.. ...+. ..+.+|.. .+..+.|+|+
T Consensus 356 ~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~----------~~~~~~~~----~~~~~~~s~d 420 (719)
T 1z68_A 356 KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVT----------CHLRKERC----QYYTASFSDY 420 (719)
T ss_dssp SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESS----------TTTTTTTB----CBEEEEECGG
T ss_pred ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceecc----------CccCCCCC----ceEEEEECCC
Confidence 5567888777 77777666654 8889998753 321 22221 11223432 2355689999
Q ss_pred e--EE-EEECC--CcEEEEECCCCc
Q 000054 2526 G--FL-SCGGD--GSVKLIQLEDYQ 2545 (2548)
Q Consensus 2526 G--La-SGS~D--GtIrIWDL~sg~ 2545 (2548)
| ++ +++.+ ..+.+||+.++.
T Consensus 421 g~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 421 AKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp GSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CCEEEEEcCCCCCCeEEEEECCCCC
Confidence 8 44 55544 468899987764
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.28 E-value=9.9e-10 Score=136.31 Aligned_cols=260 Identities=12% Similarity=0.084 Sum_probs=160.5
Q ss_pred CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe----------CCCcEEEEEcCCCccccc
Q 000054 2239 SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------LDGTVCTWQLEVGGRSNV 2308 (2548)
Q Consensus 2239 ~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS----------~DGtVrVWDl~tgk~i~i 2308 (2548)
.|+.|.+||..+++.+..+.. +..+ .++|+|+|++++++. .+++|.+||..+++....
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~----------g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~ 96 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPT----------AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKE 96 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEEC----------CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEE
T ss_pred ccCeEEEEECCCCeEEEEecC----------CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEE
Confidence 478999999999988776642 1122 899999999999986 367899999987754332
Q ss_pred ccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee-eeccCCCeEEEEEccCCCCCCCCCCE
Q 000054 2309 RPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS-ITCHEGGARSISVFDNDLGSGSVSPL 2387 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s-l~gHs~~VtSLafsP~dlg~gs~g~l 2387 (2548)
.+........+....-..++|+|++++++... .++.|.+||+.+ .+.+.. +.. .....+.+.|.+ ...
T Consensus 97 i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~-~~~~v~v~d~~~--~~~~~~~i~~--~~~~~v~~~p~~------~~~ 165 (361)
T 2oiz_A 97 ISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS-PATSIGIVDVAK--GDYVEDVTAA--AGCWSVIPQPNR------PRS 165 (361)
T ss_dssp EEECTTBCCBCCCGGGEEECTTSSEEEEEEES-SSEEEEEEETTT--TEEEEEEGGG--TTEEEEEECTTS------SSE
T ss_pred EEcCccccccCCCcceEEECCCCCEEEEECCC-CCCeEEEEECCC--CcEEEEEecC--CCcceeEEcCCC------Cee
Confidence 11100000001111223589999999987521 368999999986 455554 432 233446677773 468
Q ss_pred EEEEeCCCcEEEEeCCccccCceeeeecCCCC-CCCccccccccCCCCCC--ccCCCCCceEEEcccC------------
Q 000054 2388 IVTGGKGGDVGIHDFRYIATGKTKKHKHSDRG-GSSINTCAHADAQTGSG--SKPGDQNGMLWYIPKA------------ 2452 (2548)
Q Consensus 2388 LVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~-~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~~g------------ 2452 (2548)
+++.+.||.+.+|++. ..++.......... ........+..++++.. ....++.+.+++....
T Consensus 166 ~~~~~~dg~~~~v~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~ 243 (361)
T 2oiz_A 166 FMTICGDGGLLTINLG--EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLN 243 (361)
T ss_dssp EEEEETTSSEEEEEEC--TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCC
T ss_pred EEEECCCCcEEEEEEC--CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccC
Confidence 8899999999999953 22444322110000 00000112223344432 2334455666664211
Q ss_pred ----CCC----CEEEEEEeCCCCEEEEEeC-----------CCcEEEEECCCCcEEEEecccccccccccCcccCCCCce
Q 000054 2453 ----HLG----SVTRISTVPNTSLFLTGSK-----------DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVV 2513 (2548)
Q Consensus 2453 ----H~~----~VtsLafSPdG~~LaSGS~-----------DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V 2513 (2548)
+.+ ...-++|+|+++.++.+.. ++.|.+||+.+++.+.+++ .+.
T Consensus 244 ~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~--------------~~~--- 306 (361)
T 2oiz_A 244 DEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP--------------GRD--- 306 (361)
T ss_dssp HHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE--------------CTT---
T ss_pred ccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe--------------cCC---
Confidence 000 1112789999887776643 3489999999999998883 222
Q ss_pred eecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2514 RAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2514 ~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
+.+++|+|+| +++++. ++|.+||..++
T Consensus 307 ---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 307 ---ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp ---CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ---eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3566999999 555555 99999999987
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.26 E-value=1.4e-10 Score=139.09 Aligned_cols=238 Identities=10% Similarity=0.031 Sum_probs=143.4
Q ss_pred EEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---------
Q 000054 2223 RAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD--------- 2292 (2548)
Q Consensus 2223 ~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D--------- 2292 (2548)
..++|+|+|++++ ++..++.|.+||..+++....+..... ...+...+..++|+|+|+++++++.+
T Consensus 46 ~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 121 (349)
T 1jmx_B 46 GTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV----PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 121 (349)
T ss_dssp CEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS----TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc----cccccccccceEECCCCCEEEEEcccccccccccc
Confidence 5678899998665 556789999999999988776642110 00001347889999999999999866
Q ss_pred ---CcEEEEEcCCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC-C
Q 000054 2293 ---GTVCTWQLEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE-G 2367 (2548)
Q Consensus 2293 ---GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs-~ 2367 (2548)
+.|.+||+.+++.... ...+..+.. ...+++|+|+ +++++ +.|.+||+.+ ++.+..+..+. +
T Consensus 122 ~~~~~i~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~s~dg~-l~~~~-----~~i~~~d~~~--~~~~~~~~~~~~~ 188 (349)
T 1jmx_B 122 VKPPRLEVFSTADGLEAKP-----VRTFPMPRQVYLMRAADDGS-LYVAG-----PDIYKMDVKT--GKYTVALPLRNWN 188 (349)
T ss_dssp ECCCEEEEEEGGGGGGBCC-----SEEEECCSSCCCEEECTTSC-EEEES-----SSEEEECTTT--CCEEEEECSTTCC
T ss_pred cCCCeEEEEECCCccccce-----eeeccCCCcccceeECCCCc-EEEcc-----CcEEEEeCCC--CceeccccccccC
Confidence 8999999987643221 111222221 1234899999 55543 3499999875 44444443221 0
Q ss_pred -----------------------CeEEEEEccCCCC---CC-CCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC
Q 000054 2368 -----------------------GARSISVFDNDLG---SG-SVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG 2420 (2548)
Q Consensus 2368 -----------------------~VtSLafsP~dlg---~g-s~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~ 2420 (2548)
....+.++++.-. .. ....++.....++.+++|++.. .+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------ 254 (349)
T 1jmx_B 189 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD--LT------------ 254 (349)
T ss_dssp CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE--CS------------
T ss_pred CccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc--CC------------
Confidence 2233444432100 00 0001222344556666666321 00
Q ss_pred CCccccccccCC-CCCCccCCCCCceEEEcccC-------CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2421 SSINTCAHADAQ-TGSGSKPGDQNGMLWYIPKA-------HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2421 s~~~~~~vafSp-dGk~v~s~D~sv~Iwdi~~g-------H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.....+.++| +|+.+...++.+.+|+...+ ....+.+++|+|+|++|++++.++.|++||+.+++.+.++
T Consensus 255 --~~~~~~~~sp~dg~~l~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 255 --ELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp --SCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred --CcceeeEecCCCCCEEEEEcCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeee
Confidence 1122345666 66652222566666664321 2345678999999998888888999999999999999877
Q ss_pred c
Q 000054 2493 S 2493 (2548)
Q Consensus 2493 ~ 2493 (2548)
+
T Consensus 333 ~ 333 (349)
T 1jmx_B 333 K 333 (349)
T ss_dssp E
T ss_pred e
Confidence 4
No 165
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.26 E-value=4.9e-11 Score=155.85 Aligned_cols=224 Identities=12% Similarity=0.066 Sum_probs=149.1
Q ss_pred EEEEEEcCCCCEEEEEEC---CCeEEEEEcCC--CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCE-EEEEeCCCcE
Q 000054 2222 TRAFSSHPLRPFFLVGSS---NTHIYLWEFGK--DKATATYGVLPAANVPPPYALASISALQFDHYGHR-FASAALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~---DGsVrLWDl~t--g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~-LaSGS~DGtV 2295 (2548)
+..++|+|+ +++++++. +...+||.++. ......+.. ...+...+|+|+|+. +++.+.++.+
T Consensus 67 ~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~-----------~~~~~~~~~s~dg~~~~~~s~~~~~~ 134 (582)
T 3o4h_A 67 VLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA-----------VKPMRILSGVDTGEAVVFTGATEDRV 134 (582)
T ss_dssp ECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTT-----------SCSBEEEEEEECSSCEEEEEECSSCE
T ss_pred cccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccccC-----------CCCceeeeeCCCCCeEEEEecCCCCc
Confidence 467889999 77777765 55567766543 222223211 123446688888753 3333444445
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC----CeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG----INVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D----GtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.+||+++++...+ ...+. .-..++|||+.+++++ .+ +.|++||+.+ ++ ...+..|.+.+..
T Consensus 135 ~l~d~~~g~~~~l--------~~~~~-~~~~~spDG~~la~~~---~~~~~~~~i~~~d~~~--g~-~~~l~~~~~~~~~ 199 (582)
T 3o4h_A 135 ALYALDGGGLREL--------ARLPG-FGFVSDIRGDLIAGLG---FFGGGRVSLFTSNLSS--GG-LRVFDSGEGSFSS 199 (582)
T ss_dssp EEEEEETTEEEEE--------EEESS-CEEEEEEETTEEEEEE---EEETTEEEEEEEETTT--CC-CEEECCSSCEEEE
T ss_pred eEEEccCCcEEEe--------ecCCC-ceEEECCCCCEEEEEE---EcCCCCeEEEEEcCCC--CC-ceEeecCCCcccc
Confidence 5999988753221 11122 2235899999999765 34 7899999875 33 3467788899999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCC--cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGG--DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DG--tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi 2449 (2548)
++|+|+ |+.|+++..+| .|++|| ..+++.. .+
T Consensus 200 ~~~SpD-------G~~l~~~~~~~~~~i~~~d---~~~~~~~-~~----------------------------------- 233 (582)
T 3o4h_A 200 ASISPG-------MKVTAGLETAREARLVTVD---PRDGSVE-DL----------------------------------- 233 (582)
T ss_dssp EEECTT-------SCEEEEEECSSCEEEEEEC---TTTCCEE-EC-----------------------------------
T ss_pred ceECCC-------CCEEEEccCCCeeEEEEEc---CCCCcEE-Ec-----------------------------------
Confidence 999999 78999888899 899999 4555554 32
Q ss_pred ccCCCCCEEEEE--------EeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEE
Q 000054 2450 PKAHLGSVTRIS--------TVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2450 ~~gH~~~VtsLa--------fSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa 2521 (2548)
.+|...+..++ |+|||.++++++.||++++|++ |+.+... . ..|.+++
T Consensus 234 -~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----------------~----~~v~~~~ 289 (582)
T 3o4h_A 234 -ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----------------Q----GNHGRVV 289 (582)
T ss_dssp -CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----------------S----SEEEEEE
T ss_pred -cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----------------C----CceEEEE
Confidence 33444444444 9999999999999999999999 6654311 1 2256778
Q ss_pred EcCCe--EEEEECCC---cEEEEECCC
Q 000054 2522 VVSRG--FLSCGGDG---SVKLIQLED 2543 (2548)
Q Consensus 2522 fSPdG--LaSGS~DG---tIrIWDL~s 2543 (2548)
|+ +| +++++.+. .+.+|++.+
T Consensus 290 ~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 290 LW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred ec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99 77 66777764 366666654
No 166
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.21 E-value=1.4e-09 Score=132.71 Aligned_cols=239 Identities=13% Similarity=0.109 Sum_probs=145.4
Q ss_pred EEEEE----ECCCeEEEEEcC--CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----CcEEEEEcCC
Q 000054 2233 FFLVG----SSNTHIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----GTVCTWQLEV 2302 (2548)
Q Consensus 2233 ~LASG----S~DGsVrLWDl~--tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D----GtVrVWDl~t 2302 (2548)
++++| +.++.|.+|+++ +++....... +...+..++|+|+|++|++++.+ |.|.+|+++.
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~----------~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~ 84 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA----------EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK 84 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE----------ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc----------cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence 44555 346789999875 4543322211 23667789999999999999886 8999999875
Q ss_pred C-cccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc--ceeeec-----------cCCC
Q 000054 2303 G-GRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASITC-----------HEGG 2368 (2548)
Q Consensus 2303 g-k~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~--v~sl~g-----------Hs~~ 2368 (2548)
. ..... ......+......+..+++.+++++ ..++.|.+|++... +.. +..... +...
T Consensus 85 ~~g~~~~-----~~~~~~~~~~p~~~~~dg~~l~~~~--~~~~~v~~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~ 156 (361)
T 3scy_A 85 EKGTLHL-----LNTQKTMGADPCYLTTNGKNIVTAN--YSGGSITVFPIGQD-GALLPASDVIEFKGSGPDKERQTMPH 156 (361)
T ss_dssp TTTEEEE-----EEEEECSSSCEEEEEECSSEEEEEE--TTTTEEEEEEBCTT-SCBCSCSEEEECCCCCSCTTTCSSCC
T ss_pred CCCcEEE-----eeEeccCCCCcEEEEECCCEEEEEE--CCCCEEEEEEeCCC-CcCcccceeEEccCCCCCccccCCCc
Confidence 3 11111 1112223333333333888888776 36899999998642 211 111111 2234
Q ss_pred eEEEEEccCCCCCCCCCCEE-EEEeCCCcEEEEeCCccccC----c-eeeeecCCCCCCCccccccccCCCCCCccCCCC
Q 000054 2369 ARSISVFDNDLGSGSVSPLI-VTGGKGGDVGIHDFRYIATG----K-TKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQ 2442 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lL-VSGS~DGtVrLWDLR~l~TG----k-~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~ 2442 (2548)
+.+++|+|+ ++++ +++..++.|.+|++.. ..+ + ....-
T Consensus 157 ~~~~~~spd-------g~~l~~~~~~~~~v~v~~~~~-~~~~~~~~~l~~~~---------------------------- 200 (361)
T 3scy_A 157 LHCVRITPD-------GKYLLADDLGTDQIHKFNINP-NANADNKEKFLTKG---------------------------- 200 (361)
T ss_dssp EEEEEECTT-------SSEEEEEETTTTEEEEEEECT-TCCTTTCCCCEEEE----------------------------
T ss_pred ceEEEECCC-------CCEEEEEeCCCCEEEEEEEcC-CCCcccccceeecc----------------------------
Confidence 688999998 6655 4555689999999542 121 1 10000
Q ss_pred CceEEEcccCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCcEE--EEecccccccccccCcccCCCCceeecEEE
Q 000054 2443 NGMLWYIPKAHLGSVTRISTVPNTSLFLTGS-KDGDVKLWDAKAAQLV--YHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2443 sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS-~DGtIrIWDl~Tgell--~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
..-.....+...+..++|+|+|+++++++ .++.|.+||+.+++.. ..+. ....+. ....+
T Consensus 201 --~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~-----------~~~~~~----~~~~~ 263 (361)
T 3scy_A 201 --TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA-----------ADTVNA----QGSGD 263 (361)
T ss_dssp --EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE-----------SCSSCC----CCEEE
T ss_pred --cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe-----------cCCCCC----CCccc
Confidence 00000122344678899999999888777 5899999999877653 2221 012222 12467
Q ss_pred EEEcCCe--EEEE-EC-CCcEEEEECC
Q 000054 2520 IQVVSRG--FLSC-GG-DGSVKLIQLE 2542 (2548)
Q Consensus 2520 LafSPdG--LaSG-S~-DGtIrIWDL~ 2542 (2548)
++|+|+| |+++ .. +++|.+|+++
T Consensus 264 i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 264 IHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred EEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 8999999 5444 44 5899999996
No 167
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.10 E-value=7.8e-09 Score=138.99 Aligned_cols=244 Identities=12% Similarity=0.076 Sum_probs=160.4
Q ss_pred EEEEEEEcCCCCEEEEEECCC-----eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc-
Q 000054 2221 STRAFSSHPLRPFFLVGSSNT-----HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT- 2294 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DG-----sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt- 2294 (2548)
.+..++|+|||++||.+..++ .|++||+.+++....... ...+..++|+|||+.|+.++.|+.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-----------~~~~~~~~wspDg~~l~~~~~~~~~ 194 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-----------RVKFSCMAWTHDGKGMFYNAYPQQD 194 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-----------EECSCCEEECTTSSEEEEEECCCCS
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-----------CcccceEEEEeCCCEEEEEEECCcc
Confidence 367899999999999765433 899999999987653211 023678999999999999988876
Q ss_pred ---------------EEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCC--CCeEEEEECCC--
Q 000054 2295 ---------------VCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSN--GINVVVWDTLA-- 2353 (2548)
Q Consensus 2295 ---------------VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~--DGtVrIWDl~t-- 2353 (2548)
|.+|++.+++..... ......+...+. .++|||+.|+.+...+. +..|.+||+..
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~----v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDIL----CAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEE----EECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceE----EeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccc
Confidence 999999876521110 001122333232 48999998887652111 57899999864
Q ss_pred ----CCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC-C---CcEEEEeCCccccCc--eeeeecCCCCCCCc
Q 000054 2354 ----PPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGK-G---GDVGIHDFRYIATGK--TKKHKHSDRGGSSI 2423 (2548)
Q Consensus 2354 ----~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~-D---GtVrLWDLR~l~TGk--~l~tl~~~~~~s~~ 2423 (2548)
+ ......+..+...+... |+|+ +..|+..+. + +.|.+||+. ++. ..+.+
T Consensus 271 ~~~~~-~~~~~~l~~~~~~~~~~-~s~d-------g~~l~~~s~~~~~~~~l~~~d~~---~~~~~~~~~l--------- 329 (710)
T 2xdw_A 271 NGITG-ILKWVKLIDNFEGEYDY-VTNE-------GTVFTFKTNRHSPNYRLINIDFT---DPEESKWKVL--------- 329 (710)
T ss_dssp SSSCS-SCCCEEEECSSSSCEEE-EEEE-------TTEEEEEECTTCTTCEEEEEETT---SCCGGGCEEE---------
T ss_pred cccCC-ccceEEeeCCCCcEEEE-Eecc-------CCEEEEEECCCCCCCEEEEEeCC---CCCcccceec---------
Confidence 2 12455666677666653 6776 455554443 2 368999943 332 11121
Q ss_pred cccccccCCCCCCccCCCCCceEEEcccCCC--CCEEEEEEeCCCCEEEEEeCCCc--EEEEECCCCcEEEEeccccccc
Q 000054 2424 NTCAHADAQTGSGSKPGDQNGMLWYIPKAHL--GSVTRISTVPNTSLFLTGSKDGD--VKLWDAKAAQLVYHWSKLHERH 2499 (2548)
Q Consensus 2424 ~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~--~~VtsLafSPdG~~LaSGS~DGt--IrIWDl~Tgell~tL~~~Hs~h 2499 (2548)
..|. ..+..++|++++.++++...|+. |.+||+.+|+.+..+
T Consensus 330 ---------------------------~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l------- 375 (710)
T 2xdw_A 330 ---------------------------VPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIF------- 375 (710)
T ss_dssp ---------------------------ECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEE-------
T ss_pred ---------------------------cCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEec-------
Confidence 2232 36778999988889999999984 566787778877666
Q ss_pred ccccCcccCCCCceeecEEEEEEcCCe--EE-EEE---CCCcEEEEECCCCc
Q 000054 2500 TFLQPSSRGFGGVVRAGVTDIQVVSRG--FL-SCG---GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2500 sfl~~tl~GH~~~V~a~VtsLafSPdG--La-SGS---~DGtIrIWDL~sg~ 2545 (2548)
..+. ..+..++++|++ ++ +.+ ..++|..||+.++.
T Consensus 376 -------~~~~----~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 376 -------PLEV----GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp -------CCCS----SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred -------CCCC----ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 2232 235567889988 33 333 35789999998765
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.09 E-value=4.5e-09 Score=130.45 Aligned_cols=213 Identities=11% Similarity=0.058 Sum_probs=133.1
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC--
Q 000054 2224 AFSSHPLRPFFLVGS----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-- 2291 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS----------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-- 2291 (2548)
.++++|+|+++.++. .++.|.+||..+++.+..+.....+ ..+......++|+|+|++|+++..
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~----~~~g~~p~~i~~spdg~~l~v~n~~~ 129 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR----VQGLNYDGLFRQTTDGKFIVLQNASP 129 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB----CCBCCCGGGEEECTTSSEEEEEEESS
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc----cccCCCcceEEECCCCCEEEEECCCC
Confidence 789999999999876 3678999999999888887653211 112245678999999999998864
Q ss_pred CCcEEEEEcCCCccccc-ccCccc---eeccCCcccEEEEcCC-------------------------------------
Q 000054 2292 DGTVCTWQLEVGGRSNV-RPMESC---LCFSSHAMDVSYITSS------------------------------------- 2330 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i-~p~~s~---~t~~gH~~~V~afSpd------------------------------------- 2330 (2548)
+++|.+||+.+++.... .+.... ...........+++++
T Consensus 130 ~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (361)
T 2oiz_A 130 ATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPAL 209 (361)
T ss_dssp SEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecc
Confidence 68999999998764432 211000 0000000011112222
Q ss_pred -CCEEEEEeccCCCCeEEEEECCCCCCCcceeeec------c----CCCeEEEEEccCCCCCCCCCCEEEEEeC------
Q 000054 2331 -GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC------H----EGGARSISVFDNDLGSGSVSPLIVTGGK------ 2393 (2548)
Q Consensus 2331 -GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g------H----s~~VtSLafsP~dlg~gs~g~lLVSGS~------ 2393 (2548)
+..++... .++.|.++|+..........+.. + ..+...++++|+ +..+.++..
T Consensus 210 ~g~~~~~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d-------g~~lyv~~~~~~~~~ 279 (361)
T 2oiz_A 210 DKDKAHFVS---YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA-------SGRMYVFMHPDGKEG 279 (361)
T ss_dssp CSSEEEEEB---TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT-------TTEEEEEEESSCCTT
T ss_pred cCCEEEEEe---CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC-------CCeEEEEEccCCCcc
Confidence 22333332 45667777765321111111110 0 111223677887 344444332
Q ss_pred -----CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCE
Q 000054 2394 -----GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSL 2468 (2548)
Q Consensus 2394 -----DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~ 2468 (2548)
.+.|.+|| ..+++.+..+ ..+. +.+++|+|+|++
T Consensus 280 ~~~~~~~~v~viD---~~t~~~v~~i------------------------------------~~~~--p~~ia~spdg~~ 318 (361)
T 2oiz_A 280 THKFPAAEIWVMD---TKTKQRVARI------------------------------------PGRD--ALSMTIDQQRNL 318 (361)
T ss_dssp CTTCCCSEEEEEE---TTTTEEEEEE------------------------------------ECTT--CCEEEEETTTTE
T ss_pred cccCCCceEEEEE---CCCCcEEEEE------------------------------------ecCC--eeEEEECCCCCE
Confidence 34799999 6667777665 3344 889999999999
Q ss_pred EEEEeCCCcEEEEECCCC--cEEEEe
Q 000054 2469 FLTGSKDGDVKLWDAKAA--QLVYHW 2492 (2548)
Q Consensus 2469 LaSGS~DGtIrIWDl~Tg--ell~tL 2492 (2548)
|++++. ++|.+||..++ +.+.++
T Consensus 319 l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 319 MLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp EEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred EEEeCC-CeEEEEECCCCcceeeEEe
Confidence 999887 99999999999 988876
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.08 E-value=1.6e-08 Score=124.66 Aligned_cols=251 Identities=10% Similarity=0.060 Sum_probs=148.0
Q ss_pred EEEEEECC--CeEEEEEcC--CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC-CCcccc
Q 000054 2233 FFLVGSSN--THIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE-VGGRSN 2307 (2548)
Q Consensus 2233 ~LASGS~D--GsVrLWDl~--tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~-tgk~i~ 2307 (2548)
++++|+.. +.|.+|+++ +++.. .+.... ..+...+..++|+|+|++|++++.+ .|.+|++. +++...
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~-~~~~~~------~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~ 75 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCK-LIKRTE------IPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH 75 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEE-EEEEEE------CCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEE-EeeEEc------cCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE
Confidence 35556543 568887764 45432 221110 0012467889999999999999888 99999997 664321
Q ss_pred cccCccceeccCCcccEEEEcCCCCE--EEEEe------ccC----CCCeEEEEECCCCCCCcceeee----ccCCCeEE
Q 000054 2308 VRPMESCLCFSSHAMDVSYITSSGSV--IAAAG------HSS----NGINVVVWDTLAPPTSSRASIT----CHEGGARS 2371 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~afSpdGsl--LATgG------~SS----~DGtVrIWDl~t~~~k~v~sl~----gHs~~VtS 2371 (2548)
... ....+.... .+++|+|+. ++++. ++. .++.+.+|++... ++....+. .+...+.+
T Consensus 76 ~~~----~~~~g~~~~-~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~ 149 (365)
T 1jof_A 76 EAS----HPIGGHPRA-NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET-GKLEKNVQNYEYQENTGIHG 149 (365)
T ss_dssp EEE----EECCSSGGG-GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT-CCEEEEEEEEECCTTCCEEE
T ss_pred eeE----eecCCCCcc-EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC-CcCcceEeeEEeCCCCcceE
Confidence 110 001122111 248899984 33431 001 4789999999642 33333333 24568999
Q ss_pred EEEccCCCCCCCCCCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
++|+|+ +++++++. .++.|++||+.. +++...... .. .
T Consensus 150 ~~~spd-------G~~l~~~~~~~~~v~~~~~~~--~g~~~~~~~-------------------------------~~-~ 188 (365)
T 1jof_A 150 MVFDPT-------ETYLYSADLTANKLWTHRKLA--SGEVELVGS-------------------------------VD-A 188 (365)
T ss_dssp EEECTT-------SSEEEEEETTTTEEEEEEECT--TSCEEEEEE-------------------------------EE-C
T ss_pred EEECCC-------CCEEEEEcCCCCEEEEEEECC--CCCEEEeee-------------------------------Ee-c
Confidence 999999 67777665 468999999431 444321110 00 0
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECC--CCcEEE---EecccccccccccCcccCCCCc--eeecEEEEE-
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSK-DGDVKLWDAK--AAQLVY---HWSKLHERHTFLQPSSRGFGGV--VRAGVTDIQ- 2521 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~--Tgell~---tL~~~Hs~hsfl~~tl~GH~~~--V~a~VtsLa- 2521 (2548)
..|...+..++|+|+|+++++++. ++.|.+|++. ++++.. .+... ...+.+|.+. -...+..++
T Consensus 189 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 189 PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI-------PPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS-------CTTCCCBCTTTSSBSEEEEEEE
T ss_pred CCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC-------CCCcCCcccccccccccccEEE
Confidence 124567889999999999988875 7899999865 566532 22100 0001233210 000256789
Q ss_pred EcCCe--EEEEEC-CC-----cEEEEECC-CCc
Q 000054 2522 VVSRG--FLSCGG-DG-----SVKLIQLE-DYQ 2545 (2548)
Q Consensus 2522 fSPdG--LaSGS~-DG-----tIrIWDL~-sg~ 2545 (2548)
|+|+| |+++.. ++ +|++|+++ ++.
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence 99999 554432 23 89999996 443
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.08 E-value=3.8e-09 Score=139.79 Aligned_cols=244 Identities=9% Similarity=0.050 Sum_probs=153.6
Q ss_pred EEEEEEcCCCCEEEEE--ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeE---------EEEEc--cCCCE-EE
Q 000054 2222 TRAFSSHPLRPFFLVG--SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS---------ALQFD--HYGHR-FA 2287 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASG--S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vt---------sVaFS--PdG~~-La 2287 (2548)
+..+++++++-+++++ +.++...||....+.....+.. |...+. ...|+ |||++ |+
T Consensus 26 ~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 26 PACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALP----------APWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp CEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSC----------TTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred cceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCC----------CCccccccccccCCccceeeeecCCCeEEE
Confidence 4777888887677776 5688999999754444444322 112333 45565 99998 77
Q ss_pred EEeC-CCcEEEEEcC--C-CcccccccCccceeccC-----CcccEE--EEcCCCCEEEEEeccCCC----------CeE
Q 000054 2288 SAAL-DGTVCTWQLE--V-GGRSNVRPMESCLCFSS-----HAMDVS--YITSSGSVIAAAGHSSNG----------INV 2346 (2548)
Q Consensus 2288 SGS~-DGtVrVWDl~--t-gk~i~i~p~~s~~t~~g-----H~~~V~--afSpdGslLATgG~SS~D----------GtV 2346 (2548)
.++. +..|.++++. . +.... +.. |...+. +|+|||+.|+++. .+ ..|
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~~---------l~~~~~~~~~~~~~~~~~spDg~~l~~~~---~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPRP---------LTPVSAVGGGLRWADPVLLPERGEVWCMA---EEFTGEGPSDVRRFL 163 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCEE---------CSCCCCSTTCEEEEEEEEETTTTEEEEEE---EEECSSSTTCEEEEE
T ss_pred EEECCCCeEEEEcCCCCCCCCCEe---------ccCCccCCCCccccCcEECCCCCEEEEEE---ecccCCCCCCceeEE
Confidence 6554 4566666654 2 32111 222 344443 5999999998875 34 589
Q ss_pred EEEECCCCCC---Ccceeee-ccCCCeEEEEEccCCCCCCCCCCEEEEEeCC--------CcEEEEeCCccc-cCc--ee
Q 000054 2347 VVWDTLAPPT---SSRASIT-CHEGGARSISVFDNDLGSGSVSPLIVTGGKG--------GDVGIHDFRYIA-TGK--TK 2411 (2548)
Q Consensus 2347 rIWDl~t~~~---k~v~sl~-gHs~~VtSLafsP~dlg~gs~g~lLVSGS~D--------GtVrLWDLR~l~-TGk--~l 2411 (2548)
++||+..... .....+. .+...+..++|+|+ |+.|+.++.+ ..|++|| +. +++ ..
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD-------G~~la~~~~~~~~~~~~~~~i~~~d---~~~~g~~~~~ 233 (662)
T 3azo_A 164 AAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPD-------GRQAVWLAWDHPRMPWEGTELKTAR---VTEDGRFADT 233 (662)
T ss_dssp EEEETTSTTTTCGGGSEESSCSCSSEECCCEECTT-------SSEEEEEEECTTCCTTTCEEEEEEE---ECTTSCEEEE
T ss_pred EEEECCCCccccCCceeEEEecCCCcccCceECCC-------CCEEEEEECCCCCCCCCCcEEEEEE---ECCCCccccc
Confidence 9999875110 2344555 56677888999999 7888877755 3799999 44 341 11
Q ss_pred eeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCC--cEEEEECCCCcEE
Q 000054 2412 KHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDG--DVKLWDAKAAQLV 2489 (2548)
Q Consensus 2412 ~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DG--tIrIWDl~Tgell 2489 (2548)
..+ ..+|...+..++|+|||+++++++.|| .|.+||+.+++..
T Consensus 234 ~~l-----------------------------------~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~ 278 (662)
T 3azo_A 234 RTL-----------------------------------LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT 278 (662)
T ss_dssp EEE-----------------------------------EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE
T ss_pred EEe-----------------------------------CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee
Confidence 121 144677899999999999888888888 6667777677765
Q ss_pred EEecccccccccccCcccCCCCceee-cEEEEEEcCCe--EEEEECCCcEEEE--ECCCC
Q 000054 2490 YHWSKLHERHTFLQPSSRGFGGVVRA-GVTDIQVVSRG--FLSCGGDGSVKLI--QLEDY 2544 (2548)
Q Consensus 2490 ~tL~~~Hs~hsfl~~tl~GH~~~V~a-~VtsLafSPdG--LaSGS~DGtIrIW--DL~sg 2544 (2548)
.... .+.. .....+. .+..++|+|++ +++++. +++++| |++++
T Consensus 279 ~l~~-~~~~----------~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 279 QLCR-REEE----------FAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp ESSC-CSSB----------SSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred eccc-cccc----------ccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 4221 1000 0011111 13456899988 667777 999999 55544
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.06 E-value=5.3e-09 Score=138.39 Aligned_cols=247 Identities=11% Similarity=0.049 Sum_probs=147.1
Q ss_pred cCCCCE-EEEEEC-CCeEEEEEcC--CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----------C
Q 000054 2228 HPLRPF-FLVGSS-NTHIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----------G 2293 (2548)
Q Consensus 2228 SPdG~~-LASGS~-DGsVrLWDl~--tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D----------G 2293 (2548)
+|||++ |+.++. +..|.+++.. .......+.... ...|...+.+++|+|||+.|++++.| .
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~-----~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS-----AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC-----CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc-----cCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence 499998 775543 4556666655 203333332111 11134678999999999999999877 5
Q ss_pred cEEEEEcCC------CcccccccCccceecc-CCcccEE--EEcCCCCEEEEEeccC-----CCCeEEEEECCCCCC---
Q 000054 2294 TVCTWQLEV------GGRSNVRPMESCLCFS-SHAMDVS--YITSSGSVIAAAGHSS-----NGINVVVWDTLAPPT--- 2356 (2548)
Q Consensus 2294 tVrVWDl~t------gk~i~i~p~~s~~t~~-gH~~~V~--afSpdGslLATgG~SS-----~DGtVrIWDl~t~~~--- 2356 (2548)
.|.+||+.+ +... .+. .+...+. .|+|||+.|+.++... ....|.+||+... +
T Consensus 162 ~i~~~~~~~~~~~~~~~~~---------~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~-g~~~ 231 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAVR---------ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTED-GRFA 231 (662)
T ss_dssp EEEEEETTSTTTTCGGGSE---------ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT-SCEE
T ss_pred EEEEEECCCCccccCCcee---------EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC-Cccc
Confidence 899999987 3211 122 2233332 4999999998775210 0147999999721 3
Q ss_pred CcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000054 2357 SSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2357 k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
+......+|...+..+.|+|+ ++++++++.+|..+||.+. ..+++...... .... .....
T Consensus 232 ~~~~l~~~~~~~~~~~~~spd-------g~l~~~~~~~~~~~l~~~~-~~~~~~~~l~~---~~~~--~~~p~------- 291 (662)
T 3azo_A 232 DTRTLLGGPEEAIAQAEWAPD-------GSLIVATDRTGWWNLHRVD-PATGAATQLCR---REEE--FAGPL------- 291 (662)
T ss_dssp EEEEEEEETTBCEEEEEECTT-------SCEEEEECTTSSCEEEEEC-TTTCCEEESSC---CSSB--SSCCC-------
T ss_pred ccEEeCCCCCceEcceEECCC-------CeEEEEECCCCCeEEEEEE-CCCCceeeccc---cccc--ccCcc-------
Confidence 233334456789999999999 6688888888844444422 34454432220 0000 00000
Q ss_pred ccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE--ECCCCcEEEEecccccccccccCcccCCCCcee
Q 000054 2437 SKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLW--DAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVR 2514 (2548)
Q Consensus 2437 v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIW--Dl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~ 2514 (2548)
| .-.+..++|+|+++++++++. +.++|| |+.+++ +..+ ..|.+.+
T Consensus 292 ----------w------~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l--------------~~~~~~~- 338 (662)
T 3azo_A 292 ----------W------TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDA--------------AGPWTEW- 338 (662)
T ss_dssp ----------C------STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEEC--------------CSSCCEE-
T ss_pred ----------c------cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEe--------------cCCCCeE-
Confidence 0 011446889999999999999 999999 655555 4444 3444333
Q ss_pred ecEEEE-EEcCCe--EEEEECCCc--EEEEECCCCc
Q 000054 2515 AGVTDI-QVVSRG--FLSCGGDGS--VKLIQLEDYQ 2545 (2548)
Q Consensus 2515 a~VtsL-afSPdG--LaSGS~DGt--IrIWDL~sg~ 2545 (2548)
..+ ++++++ +++++.+.. |.+||+.++.
T Consensus 339 ---~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 339 ---AATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp ---EEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ---EEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 344 555666 446666654 4445555654
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.03 E-value=3.4e-09 Score=129.57 Aligned_cols=243 Identities=9% Similarity=-0.067 Sum_probs=147.3
Q ss_pred EEEEEcCCCCEEEEEECC---CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2223 RAFSSHPLRPFFLVGSSN---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~D---GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
..++|+|+|++|+....+ ..|.+||..+++...... + +......+.|+|+|++|+.++.++.|.+||
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~---~-------~~~~~~~~~~spdg~~l~~~~~~~~l~~~d 108 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE---G-------KGDNTFGGFISTDERAFFYVKNELNLMKVD 108 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC---S-------SCBCTTTCEECTTSSEEEEEETTTEEEEEE
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec---C-------CCCccccceECCCCCEEEEEEcCCcEEEEE
Confidence 345688999998876443 468888988876433211 1 111223378999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccE---------------EEEcCCCCEEEEEec--cCCCCeEEEEECCCCCCCcceee
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDV---------------SYITSSGSVIAAAGH--SSNGINVVVWDTLAPPTSSRASI 2362 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V---------------~afSpdGslLATgG~--SS~DGtVrIWDl~t~~~k~v~sl 2362 (2548)
+.+++...+...... .......+ ..++|+++.++.+.. ...+..|.+||+.. ++. ..+
T Consensus 109 ~~~~~~~~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~--g~~-~~~ 183 (396)
T 3c5m_A 109 LETLEEQVIYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET--GEL-EVI 183 (396)
T ss_dssp TTTCCEEEEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT--CCE-EEE
T ss_pred CCCCCcEEEEecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC--CcE-Eee
Confidence 987753322110000 00000000 124677776554310 01567899999875 333 333
Q ss_pred eccCCCeEEEEEccCCCCCCCCCCEEEEEeCC------CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000054 2363 TCHEGGARSISVFDNDLGSGSVSPLIVTGGKG------GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2363 ~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~D------GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
..+...+..+.|+|.+ +..|+..+.+ ..|.+||+ ..++. ..+
T Consensus 184 ~~~~~~~~~~~~sp~d------g~~l~~~~~~~~~~~~~~l~~~d~---~~~~~-~~l---------------------- 231 (396)
T 3c5m_A 184 HQDTAWLGHPIYRPFD------DSTVGFCHEGPHDLVDARMWLVNE---DGSNV-RKI---------------------- 231 (396)
T ss_dssp EEESSCEEEEEEETTE------EEEEEEEECSCSSSCSCCCEEEET---TSCCC-EES----------------------
T ss_pred ccCCcccccceECCCC------CCEEEEEecCCCCCCCceEEEEEC---CCCce-eEe----------------------
Confidence 3567789999999932 5556655543 35777773 22221 111
Q ss_pred ccCCCCCceEEEcccCC-CCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCcEEEEecccccccccccCcccCCC
Q 000054 2437 SKPGDQNGMLWYIPKAH-LGSVTRISTVPNTSLFLTGSKD-----GDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFG 2510 (2548)
Q Consensus 2437 v~s~D~sv~Iwdi~~gH-~~~VtsLafSPdG~~LaSGS~D-----GtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~ 2510 (2548)
.... ...+..++|+|+|++|+.++.+ +.|++||+.+++...... +.++
T Consensus 232 -------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~------------~~~~- 285 (396)
T 3c5m_A 232 -------------KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV------------MPPC- 285 (396)
T ss_dssp -------------SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE------------CCSE-
T ss_pred -------------eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee------------CCCC-
Confidence 0111 2357789999999987777554 449999999887643220 1111
Q ss_pred CceeecEEEEEEcC-Ce--EEEEE----------------CCCcEEEEECCCCcc
Q 000054 2511 GVVRAGVTDIQVVS-RG--FLSCG----------------GDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2511 ~~V~a~VtsLafSP-dG--LaSGS----------------~DGtIrIWDL~sg~l 2546 (2548)
. +.|+| +| +++++ .++.|++||+.++..
T Consensus 286 -------~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 286 -------S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp -------E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred -------C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 1 58999 98 55543 357899999987653
No 173
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.01 E-value=6.6e-08 Score=115.02 Aligned_cols=242 Identities=9% Similarity=0.026 Sum_probs=156.6
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
..+++|+|+|+ +++++..++.|..||..++ ...+.. +...+.+++++++|+.+++...++.|.+||.
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~----------~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH----------PSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES----------SCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC----------CCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 57889999998 7888889999999999877 444432 2367899999999998887777899999999
Q ss_pred CCCcccccccCccceeccCCcccEEEEcCCCCEEEEEec-cC-------------CCCeEEEEECCCCCCCcceeeeccC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGH-SS-------------NGINVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~-SS-------------~DGtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
.+++........... ....... .+++++|+++++... .+ ..+.|..+|.. ..+..+..+.
T Consensus 98 ~~g~~~~~~~~~~~~-~~~~~~~-i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~~~~~~~ 171 (296)
T 3e5z_A 98 PGGEWESIADSFEGK-KLNSPND-VCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD----GTLSAPIRDR 171 (296)
T ss_dssp TTCCEEEEECEETTE-ECCCCCC-EEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT----SCEEEEECCC
T ss_pred CCCcEEEEeeccCCC-CCCCCCC-EEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC----CCEEEeecCC
Confidence 777532211000000 0001112 347899998887310 00 12355555543 2334445666
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceE
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGML 2446 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~I 2446 (2548)
.....++|+|+ ++.+++.+.++.|.+||+. .+++..... ++
T Consensus 172 ~~~~gi~~s~d-------g~~lv~~~~~~~i~~~~~~--~~g~~~~~~------------------------------~~ 212 (296)
T 3e5z_A 172 VKPNGLAFLPS-------GNLLVSDTGDNATHRYCLN--ARGETEYQG------------------------------VH 212 (296)
T ss_dssp SSEEEEEECTT-------SCEEEEETTTTEEEEEEEC--SSSCEEEEE------------------------------EE
T ss_pred CCCccEEECCC-------CCEEEEeCCCCeEEEEEEC--CCCcCcCCC------------------------------eE
Confidence 77899999998 6777888888999999953 133320000 01
Q ss_pred EEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEE-cCC
Q 000054 2447 WYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQV-VSR 2525 (2548)
Q Consensus 2447 wdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLaf-SPd 2525 (2548)
+ ..+.+.+.+++++++|++.++. ++.|.+||.. ++.+..+ ..+.. +++++| +|+
T Consensus 213 ~---~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~--------------~~~~~-----~~~~~f~~~d 267 (296)
T 3e5z_A 213 F---TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV--------------LTPQT-----TSNLCFGGPE 267 (296)
T ss_dssp E---CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE--------------ECSSC-----CCEEEEESTT
T ss_pred e---eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE--------------ECCCC-----ceeEEEECCC
Confidence 1 1234455679999999977776 8899999986 7777666 22222 355688 578
Q ss_pred e--EEEEECCCcEEEEECCCCcc
Q 000054 2526 G--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2526 G--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
+ |..++.++ +..+++.++.+
T Consensus 268 ~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 268 GRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp SCEEEEEETTE-EEEEECSCCBC
T ss_pred CCEEEEEcCCe-EEEEEcccccc
Confidence 7 66776654 44456655543
No 174
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.01 E-value=2.8e-08 Score=115.73 Aligned_cols=236 Identities=11% Similarity=0.054 Sum_probs=153.6
Q ss_pred EEEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
..+++++++|++++ +.+.++.|.+||..++... .+. ..+...+.+++++++|+.+++.. ++.|.+||.
T Consensus 26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~---------~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~ 94 (270)
T 1rwi_B 26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLP---------FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAA 94 (270)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECC-----E-ECC---------CCSCCSCCCEEECTTCCEEEEET-TTEEEEECT
T ss_pred ccceEECCCCCEEEEccCCCCcEEEecCCCcccc-eEe---------eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeC
Confidence 47888899999777 5477899999987654322 111 01224678899999999666655 889999998
Q ss_pred CCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
........ . . ...... .+++++|+++++.. .++.|.+||... .............+.++++.++
T Consensus 95 ~~~~~~~~-~------~-~~~~~p~~i~~~~~g~l~v~~~---~~~~i~~~~~~~--~~~~~~~~~~~~~p~~i~~~~~- 160 (270)
T 1rwi_B 95 GSNNQTVL-P------F-DGLNYPEGLAVDTQGAVYVADR---GNNRVVKLAAGS--KTQTVLPFTGLNDPDGVAVDNS- 160 (270)
T ss_dssp TCSCCEEC-C------C-CSCSSEEEEEECTTCCEEEEEG---GGTEEEEECTTC--CSCEECCCCSCCSCCCEEECTT-
T ss_pred CCceEeee-e------c-CCcCCCcceEECCCCCEEEEEC---CCCEEEEEECCC--ceeEeeccccCCCceeEEEeCC-
Confidence 75432111 0 1 111222 24788998777653 578899997643 2222222223346788999887
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT 2458 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt 2458 (2548)
+.++++...++.|.+||.. ........ ..+...+.
T Consensus 161 ------g~l~v~~~~~~~i~~~~~~---~~~~~~~~------------------------------------~~~~~~p~ 195 (270)
T 1rwi_B 161 ------GNVYVTDTDNNRVVKLEAE---SNNQVVLP------------------------------------FTDITAPW 195 (270)
T ss_dssp ------CCEEEEEGGGTEEEEECTT---TCCEEECC------------------------------------CSSCCSEE
T ss_pred ------CCEEEEECCCCEEEEEecC---CCceEeec------------------------------------ccCCCCce
Confidence 6677777778999999943 22221111 12235678
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcE
Q 000054 2459 RISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSV 2536 (2548)
Q Consensus 2459 sLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtI 2536 (2548)
+++++++|.++++...++.|.+||........ .. ..+. ..+.+++++++| +++...+++|
T Consensus 196 ~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-------------~~~~----~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 196 GIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-------------FTGL----NTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp EEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-------------CCSC----SCEEEEEECTTCCEEEEEGGGTEE
T ss_pred EEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-------------cCCC----CCceeEEECCCCCEEEEECCCCEE
Confidence 99999999888888788999999987654332 10 1111 235678999999 6788889999
Q ss_pred EEEECCCCc
Q 000054 2537 KLIQLEDYQ 2545 (2548)
Q Consensus 2537 rIWDL~sg~ 2545 (2548)
+++++....
T Consensus 258 ~~~~~~~~~ 266 (270)
T 1rwi_B 258 VKLTSLEHH 266 (270)
T ss_dssp EEECCCGGG
T ss_pred EEEcCCCcc
Confidence 999987654
No 175
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.01 E-value=5e-09 Score=140.60 Aligned_cols=243 Identities=9% Similarity=-0.038 Sum_probs=152.4
Q ss_pred EEEEEEEcCCCCEEEE-----EECCCeEEEEEcCCCcee-EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc
Q 000054 2221 STRAFSSHPLRPFFLV-----GSSNTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LAS-----GS~DGsVrLWDl~tg~~l-~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt 2294 (2548)
.+..++|+|||++||. |+.+..|++||+.+++.+ .. ... . .....++|+|||+.|+.++.|+.
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~--~~~--------~-~~~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD--VIE--------G-GKYATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC--CBS--------C-CTTCCCEECTTSSEEEEEECCCC
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc--ccC--------c-ccccceEEecCCCEEEEEEecCC
Confidence 3688999999999993 444578999999998754 11 000 0 11267999999999999998876
Q ss_pred -------------EEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccC-CCCeEEEEECCCCCCCc
Q 000054 2295 -------------VCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSS-NGINVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2295 -------------VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS-~DGtVrIWDl~t~~~k~ 2358 (2548)
|++|++.++..... .......+...+. .++|||+.|+.+.... ....|.+||... + .
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~----lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~--~-~ 263 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDT----VVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE--K-D 263 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCE----EEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC--S-S
T ss_pred CCCccccCCCCCEEEEEECCCCchhce----EEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC--C-c
Confidence 99999987752111 0111223333333 4899999888765210 012566665432 2 3
Q ss_pred ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe---CCCcEEEEeCCccccCce--eeeecCCCCCCCccccccccCCC
Q 000054 2359 RASITCHEGGARSISVFDNDLGSGSVSPLIVTGG---KGGDVGIHDFRYIATGKT--KKHKHSDRGGSSINTCAHADAQT 2433 (2548)
Q Consensus 2359 v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS---~DGtVrLWDLR~l~TGk~--l~tl~~~~~~s~~~~~~vafSpd 2433 (2548)
...+..+...+....+ +++ + +++++. .++.|.+||+. ++.. ...+
T Consensus 264 ~~~l~~~~~~~~~~~~-~~g------~-l~~~s~~~~~~~~l~~~d~~---~~~~~~~~~l------------------- 313 (695)
T 2bkl_A 264 FRLLVKGVGAKYEVHA-WKD------R-FYVLTDEGAPRQRVFEVDPA---KPARASWKEI------------------- 313 (695)
T ss_dssp CEEEEECSSCCEEEEE-ETT------E-EEEEECTTCTTCEEEEEBTT---BCSGGGCEEE-------------------
T ss_pred eEEeecCCCceEEEEe-cCC------c-EEEEECCCCCCCEEEEEeCC---CCCccCCeEE-------------------
Confidence 4556666667777766 552 4 555554 35889999943 3321 1111
Q ss_pred CCCccCCCCCceEEEcccCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECC-CCcEEEEecccccccccccCcccCC-C
Q 000054 2434 GSGSKPGDQNGMLWYIPKAH-LGSVTRISTVPNTSLFLTGSKDGDVKLWDAK-AAQLVYHWSKLHERHTFLQPSSRGF-G 2510 (2548)
Q Consensus 2434 Gk~v~s~D~sv~Iwdi~~gH-~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~-Tgell~tL~~~Hs~hsfl~~tl~GH-~ 2510 (2548)
...+ ...|..++++ ++.++++...|+..++|.+. +++.+..+. .+ .
T Consensus 314 ----------------~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~--------------~~~~ 362 (695)
T 2bkl_A 314 ----------------VPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ--------------LPGV 362 (695)
T ss_dssp ----------------ECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC--------------CSSS
T ss_pred ----------------ecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec--------------CCCC
Confidence 0222 4467788888 77889999999998888665 455555441 12 2
Q ss_pred CceeecEEEEEEcCCe--EE-EEE---CCCcEEEEECCCCcc
Q 000054 2511 GVVRAGVTDIQVVSRG--FL-SCG---GDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2511 ~~V~a~VtsLafSPdG--La-SGS---~DGtIrIWDL~sg~l 2546 (2548)
+ .+..++++|++ ++ +.+ .+++|++||+.++..
T Consensus 363 ~----~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 363 G----AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp S----EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred e----EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 2 23344788887 43 332 357899999988654
No 176
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.00 E-value=1e-08 Score=138.58 Aligned_cols=212 Identities=11% Similarity=0.092 Sum_probs=135.0
Q ss_pred EEEEEcCCCCEEEEEECC---------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2223 RAFSSHPLRPFFLVGSSN---------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~D---------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
..++|||||++|+.++.+ +.+.+||+.+++... + . .|.+.+...+|||||+.||.+. |+
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l---~-------~~~~~~~~~~~SPdG~~la~~~-~~ 132 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-E---E-------RIPNNTQWVTWSPVGHKLAYVW-NN 132 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-S---S-------CCCTTEEEEEECSSTTCEEEEE-TT
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-c---c-------cCCCcceeeEECCCCCEEEEEE-CC
Confidence 357889999999988876 566799999987432 1 1 2346799999999999999884 78
Q ss_pred cEEEEEcCCCcccccccCc-cceeccCCcc-----------cEEEEcCCCCEEEEEeccCCC------------------
Q 000054 2294 TVCTWQLEVGGRSNVRPME-SCLCFSSHAM-----------DVSYITSSGSVIAAAGHSSNG------------------ 2343 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~-s~~t~~gH~~-----------~V~afSpdGslLATgG~SS~D------------------ 2343 (2548)
.|.+|++.++....+.... ....+.++.. .-.+|+|||+.||.+.. ++
T Consensus 133 ~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~--d~~~v~~~~~~~~~~~~~~~ 210 (740)
T 4a5s_A 133 DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF--NDTEVPLIEYSFYSDESLQY 210 (740)
T ss_dssp EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE--ECTTCCEEEEEECCSTTCSS
T ss_pred eEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEE--cccCCceEEEEeecCCCCCC
Confidence 9999999877543221100 0111222221 11469999999988641 11
Q ss_pred -----------------CeEEEEECCC---CCCCcceeee------ccCCCeEEEEEccCCCCCCCCCCEEEEEeC----
Q 000054 2344 -----------------INVVVWDTLA---PPTSSRASIT------CHEGGARSISVFDNDLGSGSVSPLIVTGGK---- 2393 (2548)
Q Consensus 2344 -----------------GtVrIWDl~t---~~~k~v~sl~------gHs~~VtSLafsP~dlg~gs~g~lLVSGS~---- 2393 (2548)
..|++||+.+ +.......+. +|...+..++|+|+ ++.++....
T Consensus 211 ~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspd-------g~~~~~~~~r~~~ 283 (740)
T 4a5s_A 211 PKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQ-------ERISLQWLRRIQN 283 (740)
T ss_dssp CEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEET-------TEEEEEEEESSTT
T ss_pred CcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCC-------CeEEEEEeCCCCC
Confidence 1578888865 3110222333 37788999999999 565555432
Q ss_pred CCcEEEEeCCccccCc----eeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE-----EEEEeC
Q 000054 2394 GGDVGIHDFRYIATGK----TKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT-----RISTVP 2464 (2548)
Q Consensus 2394 DGtVrLWDLR~l~TGk----~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt-----sLafSP 2464 (2548)
+..|.+|| ..+++ +.... .+. ..+|.+.|. .++|+|
T Consensus 284 ~~~i~~~d---~~tg~~~~~~~~~~------------------------------~l~--~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 284 YSVMDICD---YDESSGRWNCLVAR------------------------------QHI--EMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp EEEEEEEE---EETTTTEEEECGGG------------------------------CEE--EECSSSCSSSSSCCCCEECT
T ss_pred EEEEEEEE---CCCCccccceeEEE------------------------------Eee--eccCCceEccCcCCCceEcC
Confidence 34799999 55555 22111 000 022333333 678999
Q ss_pred CCCEEE-EEeC-CC--cEEEEECCCCcEEE
Q 000054 2465 NTSLFL-TGSK-DG--DVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2465 dG~~La-SGS~-DG--tIrIWDl~Tgell~ 2490 (2548)
||+.++ ..+. +| .|.+||+.+++...
T Consensus 329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 329 DGNSFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp TSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred CCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence 999877 6664 44 68888988776543
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.99 E-value=3.5e-08 Score=119.18 Aligned_cols=220 Identities=9% Similarity=-0.006 Sum_probs=140.5
Q ss_pred EEEEEEcCCCCEEEEEECC---C--eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----
Q 000054 2222 TRAFSSHPLRPFFLVGSSN---T--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---- 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D---G--sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---- 2292 (2548)
+..+.|+|||++|+.++.+ + .|.+||+.+++....... .. +..++|+|+|+.|+.++.+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-----------~~-~~~~~wspdg~~l~~~~~~~~~~ 128 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-----------KN-IRSLEWNEDSRKLLIVGFKRRED 128 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-----------SE-EEEEEECTTSSEEEEEEECCCC-
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-----------CC-ccceeECCCCCEEEEEEccCCCc
Confidence 3678999999999977653 3 477788887765544321 13 8999999999999888643
Q ss_pred -----------------------CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC------
Q 000054 2293 -----------------------GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG------ 2343 (2548)
Q Consensus 2293 -----------------------GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D------ 2343 (2548)
..|.+||+.+++..... . .. ...-..|+|+| +++++. .+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l-----~-~~--~~~~~~~spdg-~~~~~~---~~~~~~~~ 196 (347)
T 2gop_A 129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF-----E-KP--RFSSGIWHRDK-IVVNVP---HREIIPQY 196 (347)
T ss_dssp --------CCCC---------CEEEEEEEETTTTEEEEEE-----E-EE--TTCEEEEETTE-EEEEEE---CCCSSCCS
T ss_pred CCcEEEcccceeecCcccccCccceEEEEECCCCeEEeee-----c-CC--CcccccCCCCe-EEEEEe---cccccccc
Confidence 57888999877531111 1 11 11223588999 777664 22
Q ss_pred C-eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCC--------CcEEEEeCCccccCceeeee
Q 000054 2344 I-NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKG--------GDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2344 G-tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~D--------GtVrLWDLR~l~TGk~l~tl 2414 (2548)
. ...||.+.. ++ ...+..+ ..+..+ +|+ ++.|+.++.+ ..|.+|| +++....
T Consensus 197 ~~~~~l~~~d~--~~-~~~l~~~-~~~~~~--spd-------g~~l~~~~~~~~~~~~~~~~l~~~d-----~~~~~~l- 257 (347)
T 2gop_A 197 FKFWDIYIWED--GK-EEKMFEK-VSFYAV--DSD-------GERILLYGKPEKKYMSEHNKLYIYD-----GKEVMGI- 257 (347)
T ss_dssp SCCEEEEEEET--TE-EEEEEEE-ESEEEE--EEC-------SSCEEEEECCSSSCCCSSCEEEEEC-----SSCEEES-
T ss_pred cccccEEEeCC--Cc-eEEeccC-cceeeE--CCC-------CCEEEEEEccccCCccccceEEEEC-----CCceEec-
Confidence 2 344444432 33 3334444 555554 777 6677766644 3566665 2332221
Q ss_pred cCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE-EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2415 HSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR-ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2415 ~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts-LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
..+|...+.. +.|+ ++ ++++++.|+.+++| +.+++....+
T Consensus 258 -----------------------------------~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~- 298 (347)
T 2gop_A 258 -----------------------------------LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA- 298 (347)
T ss_dssp -----------------------------------STTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-
T ss_pred -----------------------------------cccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-
Confidence 1446667776 8999 88 99999999999999 8766654322
Q ss_pred ccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcE-EEEECC
Q 000054 2494 KLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSV-KLIQLE 2542 (2548)
Q Consensus 2494 ~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtI-rIWDL~ 2542 (2548)
.+. ..|.+++|+| + +++++.++.. ++|.++
T Consensus 299 --------------~~~----~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 299 --------------KGR----HWIMGFDVDE-IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp --------------CSS----SEEEEEEESS-SEEEEEECSSSCCEEEEES
T ss_pred --------------cCC----CeEEeeeeeC-cEEEEEcCCCChHHheEeC
Confidence 122 2356778999 8 6677777765 788775
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.94 E-value=5e-07 Score=108.80 Aligned_cols=242 Identities=14% Similarity=0.088 Sum_probs=150.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----CcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----GTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D----GtVrV 2297 (2548)
..+++|+|+|++++++..++.|.+||..+++....... +...+.+++|+++|+.++++..+ +.|.+
T Consensus 47 ~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~----------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 47 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS----------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred ccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC----------CCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 47788899999888888999999999988775443311 22679999999999988877766 68999
Q ss_pred EEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEecc---CCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHS---SNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~S---S~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
||.+++....... ...+...+. .++++|+++++.... ...+.|..+|... .+ +..+..+...+..+
T Consensus 117 ~d~~~~~~~~~~~------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~~~~~~~~i 187 (333)
T 2dg1_A 117 ATENGDNLQDIIE------DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF--RT-VTPIIQNISVANGI 187 (333)
T ss_dssp ECTTSCSCEEEEC------SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS--CC-EEEEEEEESSEEEE
T ss_pred EeCCCCEEEEEEc------cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC--CE-EEEeecCCCcccce
Confidence 9988764321110 011222333 488999888775300 0024566666542 22 23333344568899
Q ss_pred EEccCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2373 SVFDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2373 afsP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
+|+|+ +. +.++.+.++.|.+||++. .+..+..+. ..+.....
T Consensus 188 ~~~~d-------g~~l~v~~~~~~~i~~~d~~~--~g~~~~~~~----------------------------~~~~~~~~ 230 (333)
T 2dg1_A 188 ALSTD-------EKVLWVTETTANRLHRIALED--DGVTIQPFG----------------------------ATIPYYFT 230 (333)
T ss_dssp EECTT-------SSEEEEEEGGGTEEEEEEECT--TSSSEEEEE----------------------------EEEEEECC
T ss_pred EECCC-------CCEEEEEeCCCCeEEEEEecC--CCcCccccc----------------------------ceEEEecC
Confidence 99998 55 445556789999999531 122222110 00000012
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEE
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS 2529 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS 2529 (2548)
++ ..+..++++++|+++++...++.|.+||. +++.+..+.. +.. ..||. ..+.+++|+|++ |+.
T Consensus 231 ~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~-~~~-------~~g~~----~~~~~~~~~~dg~~L~v 296 (333)
T 2dg1_A 231 GH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI-PGR-------DEGHM----LRSTHPQFIPGTNQLII 296 (333)
T ss_dssp SS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC-TTG-------GGTCS----CBCCEEEECTTSCEEEE
T ss_pred CC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEc-CCC-------ccccc----cCcceEEECCCCCEEEE
Confidence 22 45678999999999888888899999998 5777666620 000 01221 124567899997 554
Q ss_pred EECC
Q 000054 2530 CGGD 2533 (2548)
Q Consensus 2530 GS~D 2533 (2548)
++.+
T Consensus 297 ~~~~ 300 (333)
T 2dg1_A 297 CSND 300 (333)
T ss_dssp EEEC
T ss_pred EeCc
Confidence 4444
No 179
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.92 E-value=4.2e-08 Score=120.22 Aligned_cols=215 Identities=9% Similarity=0.017 Sum_probs=135.1
Q ss_pred EEEcCCCceeEEEeccCCCCCCCCCCCCCeEE-----EEEccCCCEEEEEeC-CC--cEEEEEcCCCcccccccCcccee
Q 000054 2245 LWEFGKDKATATYGVLPAANVPPPYALASISA-----LQFDHYGHRFASAAL-DG--TVCTWQLEVGGRSNVRPMESCLC 2316 (2548)
Q Consensus 2245 LWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vts-----VaFSPdG~~LaSGS~-DG--tVrVWDl~tgk~i~i~p~~s~~t 2316 (2548)
.+|..++..+..+.. |...+.. .+|+|||++|+.++. +| .|.+||+.+++....
T Consensus 14 ~~~~~~g~~~~~lt~----------~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------- 75 (388)
T 3pe7_A 14 YQDASTGAQVTRLTP----------PDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------- 75 (388)
T ss_dssp EECTTTCCEEEECSC----------TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC--------
T ss_pred EecCCCCcceEEecC----------CcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe--------
Confidence 345566766666532 1233444 789999999999887 67 477888887753321
Q ss_pred ccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE--ccCCCCCCCCCCEEEEE-
Q 000054 2317 FSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV--FDNDLGSGSVSPLIVTG- 2391 (2548)
Q Consensus 2317 ~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf--sP~dlg~gs~g~lLVSG- 2391 (2548)
..++...+ ..|+|||+.|+.+. .++.|++||+.+ ++.......+...+....+ +++ +..++..
T Consensus 76 t~~~~~~~~~~~~spdg~~l~~~~---~~~~l~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~d-------g~~l~~~~ 143 (388)
T 3pe7_A 76 TEGRGDNTFGGFLSPDDDALFYVK---DGRNLMRVDLAT--LEENVVYQVPAEWVGYGTWVANSD-------CTKLVGIE 143 (388)
T ss_dssp CCSSCBCSSSCEECTTSSEEEEEE---TTTEEEEEETTT--CCEEEEEECCTTEEEEEEEEECTT-------SSEEEEEE
T ss_pred eeCCCCCccceEEcCCCCEEEEEe---CCCeEEEEECCC--CcceeeeechhhcccccceeECCC-------CCeecccc
Confidence 23333333 25999999999986 788999999986 4444445555555544443 555 5666532
Q ss_pred ---------------------eCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000054 2392 ---------------------GKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2392 ---------------------S~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
+.++.|.+|| +.+++....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d---~~~g~~~~l------------------------------------- 183 (388)
T 3pe7_A 144 IRREDWVPLTDWKKFHEFYFTKPCCRLMRVD---LKTGESTVI------------------------------------- 183 (388)
T ss_dssp EEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE---TTTCCEEEE-------------------------------------
T ss_pred ccCcccccccccchhhhhhccCCcceEEEEE---CCCCceEEe-------------------------------------
Confidence 2335677777 334433222
Q ss_pred cCCCCCEEEEEEeC-CCCEEEEEeCC------CcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEc
Q 000054 2451 KAHLGSVTRISTVP-NTSLFLTGSKD------GDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVV 2523 (2548)
Q Consensus 2451 ~gH~~~VtsLafSP-dG~~LaSGS~D------GtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafS 2523 (2548)
..+...+..++|+| +|+.|+..+.+ ..|.++|..+++... + ..+... ..+..++|+
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l--------------~~~~~~--~~~~~~~~s 246 (388)
T 3pe7_A 184 LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-V--------------KTHAEG--ESCTHEFWV 246 (388)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-S--------------CCCCTT--EEEEEEEEC
T ss_pred ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-e--------------eeCCCC--cccccceEC
Confidence 23456788999999 99998887763 378888887655432 2 112110 124566899
Q ss_pred CCe--EEEEEC--CC---cEEEEECCCCcc
Q 000054 2524 SRG--FLSCGG--DG---SVKLIQLEDYQH 2546 (2548)
Q Consensus 2524 PdG--LaSGS~--DG---tIrIWDL~sg~l 2546 (2548)
||| |+..+. ++ .|++||+.++..
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 999 654332 22 399999988753
No 180
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.89 E-value=1.9e-06 Score=101.07 Aligned_cols=267 Identities=9% Similarity=0.014 Sum_probs=170.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++++++|.++++...++.|.+||.. ++. ..+.. + .+...+.+++++++|..+++...++.|..||..
T Consensus 17 ~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~-~-------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 17 PYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYPL-P-------TPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEC-S-------STTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred ccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEecC-C-------cccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 5888889999988877778999999988 543 33321 1 123679999999999988887778999999976
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc-eeeeccCCCeEEEEEccCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR-ASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v-~sl~gHs~~VtSLafsP~d 2378 (2548)
++.... ........+. ++.++|+++++.. .++.|..||. . ++.. .....+...+..+++.++
T Consensus 87 -g~~~~~-------~~~~~~~~~~~i~~~~~g~l~v~~~---~~~~i~~~d~-~--g~~~~~~~~~~~~~~~~i~~~~~- 151 (299)
T 2z2n_A 87 -GIIKEY-------TLPNPDSAPYGITEGPNGDIWFTEM---NGNRIGRITD-D--GKIREYELPNKGSYPSFITLGSD- 151 (299)
T ss_dssp -SCEEEE-------ECSSTTCCEEEEEECTTSCEEEEET---TTTEEEEECT-T--CCEEEEECSSTTCCEEEEEECTT-
T ss_pred -CcEEEE-------eCCCcCCCceeeEECCCCCEEEEec---CCceEEEECC-C--CCEEEecCCCCCCCCceEEEcCC-
Confidence 321111 0111222232 4778898887763 5789999998 3 2222 122234567899999887
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccC-CCCCceEEEc-------
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKP-GDQNGMLWYI------- 2449 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s-~D~sv~Iwdi------- 2449 (2548)
+.+.++...++.|..|| . +++..... ... .......+++.++|.+ ++. .++.+..++.
T Consensus 152 ------g~l~v~~~~~~~i~~~~---~-~g~~~~~~-~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~ 218 (299)
T 2z2n_A 152 ------NALWFTENQNNAIGRIT---E-SGDITEFK-IPT--PASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEF 218 (299)
T ss_dssp ------SCEEEEETTTTEEEEEC---T-TCCEEEEE-CSS--TTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEE
T ss_pred ------CCEEEEeCCCCEEEEEc---C-CCcEEEee-CCC--CCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEE
Confidence 66777777788999999 4 44443321 111 1122345677777776 332 2445555553
Q ss_pred -ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-E
Q 000054 2450 -PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-F 2527 (2548)
Q Consensus 2450 -~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-L 2527 (2548)
...+...+.+++++++|+++++...++.|.+||. +++. ..+. +.++. ..+.++++ ++| +
T Consensus 219 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~------------~~~~~----~~~~~i~~-~~g~l 279 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYP------------IQIKS----AEPHGICF-DGETI 279 (299)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEE------------CSSSS----CCEEEEEE-CSSCE
T ss_pred ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEe------------CCCCC----CccceEEe-cCCCE
Confidence 1224467899999999998777767899999998 4543 3331 11222 23567788 888 6
Q ss_pred EEEECCCcEEEEECCCCc
Q 000054 2528 LSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2528 aSGS~DGtIrIWDL~sg~ 2545 (2548)
..+...+.|..++.+++.
T Consensus 280 ~v~~~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 280 WFAMECDKIGKLTLIKDN 297 (299)
T ss_dssp EEEETTTEEEEEEEC---
T ss_pred EEEecCCcEEEEEcCccc
Confidence 555556778788877654
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.89 E-value=9.1e-08 Score=115.57 Aligned_cols=221 Identities=10% Similarity=0.038 Sum_probs=139.9
Q ss_pred EEEEEEcCCCCEEEEEE---------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2222 TRAFSSHPLRPFFLVGS---------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS---------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
+...++ +|++++... .++.|.+||..+++.. .+ ..+..++|+|||++|+.++.+
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l--------------~~~~~~~~SpDg~~la~~~~~ 79 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI--------------ENATMPRISPDGKKIAFMRAN 79 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE--------------ESCEEEEECTTSSEEEEEEEE
T ss_pred cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec--------------ccCCCeEECCCCCEEEEEEec
Confidence 455666 888887532 3677999999887643 22 347889999999999988754
Q ss_pred ---C--cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEecc------------------------CCC
Q 000054 2293 ---G--TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS------------------------SNG 2343 (2548)
Q Consensus 2293 ---G--tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~S------------------------S~D 2343 (2548)
+ .|.+|++.+++.... ...+...-..|+|+|+.|+.+... ...
T Consensus 80 ~~~~~~~l~~~~~~~g~~~~l--------~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 151 (347)
T 2gop_A 80 EEKKVSEIWVADLETLSSKKI--------LEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEK 151 (347)
T ss_dssp TTTTEEEEEEEETTTTEEEEE--------EEESEEEEEEECTTSSEEEEEEECCCC---------CCCC---------CE
T ss_pred cCCCcceEEEEECCCCceEEE--------EcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCcc
Confidence 3 377778776643221 111111112489999988887410 002
Q ss_pred CeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC-------cEEEEeCCccccCceeeeecC
Q 000054 2344 INVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG-------DVGIHDFRYIATGKTKKHKHS 2416 (2548)
Q Consensus 2344 GtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG-------tVrLWDLR~l~TGk~l~tl~~ 2416 (2548)
..|.+||+.. ++.+..+.. . .+..+.|+|+ + +++++..++ ...+|.+. +++. ..+
T Consensus 152 ~~l~~~d~~~--~~~~~~l~~-~-~~~~~~~spd-------g-~~~~~~~~~~~~~~~~~~~l~~~d---~~~~-~~l-- 213 (347)
T 2gop_A 152 TTFWIFDTES--EEVIEEFEK-P-RFSSGIWHRD-------K-IVVNVPHREIIPQYFKFWDIYIWE---DGKE-EKM-- 213 (347)
T ss_dssp EEEEEEETTT--TEEEEEEEE-E-TTCEEEEETT-------E-EEEEEECCCSSCCSSCCEEEEEEE---TTEE-EEE--
T ss_pred ceEEEEECCC--CeEEeeecC-C-CcccccCCCC-------e-EEEEEecccccccccccccEEEeC---CCce-EEe--
Confidence 5788999875 333244444 3 7889999998 6 777776553 45666532 2222 222
Q ss_pred CCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC--------CcEEEEECCCCcE
Q 000054 2417 DRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD--------GDVKLWDAKAAQL 2488 (2548)
Q Consensus 2417 ~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D--------GtIrIWDl~Tgel 2488 (2548)
..+ ..+..+ +|+|+.|+.++.+ ..|.+|| +++.
T Consensus 214 ----------------------------------~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~ 254 (347)
T 2gop_A 214 ----------------------------------FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV 254 (347)
T ss_dssp ----------------------------------EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE
T ss_pred ----------------------------------ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce
Confidence 112 444444 9999988887754 3688888 5654
Q ss_pred EEEecccccccccccCcccCCCCceeecEEE-EEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2489 VYHWSKLHERHTFLQPSSRGFGGVVRAGVTD-IQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2489 l~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts-LafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
.. + ..+|... +.+ +.|+ +| +++++.|+.+++| ++++
T Consensus 255 ~~-l-------------~~~~~~~----~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 255 MG-I-------------LDEVDRG----VGQAKIKD-GKVYFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp EE-S-------------STTCCSE----EEEEEEET-TEEEEEEEETTEEEEE-EESS
T ss_pred Ee-c-------------cccCCcc----cCCccEEc-CcEEEEEecCCcEEEE-EcCC
Confidence 33 2 1344433 333 6899 88 7788999999999 8744
No 182
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.87 E-value=7.9e-07 Score=111.29 Aligned_cols=268 Identities=11% Similarity=-0.004 Sum_probs=160.0
Q ss_pred CCCCEEEEEEC--CC---eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe----------CCC
Q 000054 2229 PLRPFFLVGSS--NT---HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------LDG 2293 (2548)
Q Consensus 2229 PdG~~LASGS~--DG---sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS----------~DG 2293 (2548)
|+++++.+... .+ +|.++|..+++.+..+.. + ... .++++|||++++++. .++
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~--g--------~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--G--------FLP--NPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC--C--------CCC--CeEECCCCCEEEEEeccccccccCCCCC
Confidence 55665555432 22 889999999988766532 1 122 899999999999886 367
Q ss_pred cEEEEEcCCCcccccccCc-cceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee-eeccCCCeEE
Q 000054 2294 TVCTWQLEVGGRSNVRPME-SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS-ITCHEGGARS 2371 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~-s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s-l~gHs~~VtS 2371 (2548)
.|.+||..+.+.....+.. ......+....-..++|||++++++... .++.|.++| .+ .+.+.. +.. .+ +
T Consensus 98 ~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~-~~~~v~viD-~t--~~~~~~~i~~-~~---~ 169 (373)
T 2mad_H 98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA-AGPAVGLVV-QG--GSSDDQLLSS-PT---C 169 (373)
T ss_pred eEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC-CCCeEEEEE-CC--CCEEeEEcCC-Cc---e
Confidence 8999999876543322111 0000001111223589999999987511 257899999 76 555555 432 11 2
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC--CCCCccccccccCCCCCC--ccCCCCCceEE
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR--GGSSINTCAHADAQTGSG--SKPGDQNGMLW 2447 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~--~~s~~~~~~vafSpdGk~--v~s~D~sv~Iw 2447 (2548)
+.+.|.. ...+++.+.||.+.++| . +++......... ...........+.+++.. .....+.+.+.
T Consensus 170 ~~~~~~~------~~~~~~~~~dg~~~~vd---~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vi 239 (373)
T 2mad_H 170 YHIHPGA------PSTFYLLCAQGGLAKTD---H-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQA 239 (373)
T ss_pred EEEEeCC------CceEEEEcCCCCEEEEE---C-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEE
Confidence 4445553 45677788899999999 4 555542221000 011111111222333221 22233344444
Q ss_pred EcccC--------------------CCCCEEEEEEeCCCCEEEEEeC----------CCcEEEEECCCCcEEEEeccccc
Q 000054 2448 YIPKA--------------------HLGSVTRISTVPNTSLFLTGSK----------DGDVKLWDAKAAQLVYHWSKLHE 2497 (2548)
Q Consensus 2448 di~~g--------------------H~~~VtsLafSPdG~~LaSGS~----------DGtIrIWDl~Tgell~tL~~~Hs 2497 (2548)
|+... .......++++|+++.++.+.. ++.|.+.|..+++.+.+++
T Consensus 240 d~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~---- 315 (373)
T 2mad_H 240 DISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS---- 315 (373)
T ss_pred eccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE----
Confidence 43211 0122344788999888777653 3589999999999998883
Q ss_pred ccccccCcccCCCCceeecEEEEEEcCCe---EEEEE-CCCcEEEEECCCCc
Q 000054 2498 RHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCG-GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS-~DGtIrIWDL~sg~ 2545 (2548)
-++ ....++|+||| ++++. .+++|.++|+.++.
T Consensus 316 ---------~g~------~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 316 ---------LGH------DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred ---------CCC------CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 111 13567999998 55655 68999999998864
No 183
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.87 E-value=2.7e-08 Score=121.62 Aligned_cols=192 Identities=8% Similarity=-0.052 Sum_probs=121.4
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEE-------------------EEEccCCCE
Q 000054 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISA-------------------LQFDHYGHR 2285 (2548)
Q Consensus 2225 VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vts-------------------VaFSPdG~~ 2285 (2548)
+.|+|+|++|+.++.++.|++||+.+++......... +.... +.|+|+++.
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~----------~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~ 155 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDE----------EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW 155 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT----------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc----------ccCCCCCEEEeccCCccccccccccccCCCCcc
Confidence 5688999999999999999999999887655443211 11111 356777776
Q ss_pred EEEE-----eCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcC-CCCEEEEEeccCCC----CeEEEEECCC
Q 000054 2286 FASA-----ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITS-SGSVIAAAGHSSNG----INVVVWDTLA 2353 (2548)
Q Consensus 2286 LaSG-----S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSp-dGslLATgG~SS~D----GtVrIWDl~t 2353 (2548)
++.+ ..+..|.+||+.+++...+ ..+...+. .|+| +++.++.+... .. ..|.+||+..
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~~~---------~~~~~~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~ 225 (396)
T 3c5m_A 156 EKFAEFYHTNPTCRLIKVDIETGELEVI---------HQDTAWLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDG 225 (396)
T ss_dssp HHHHHHHHTCCCEEEEEEETTTCCEEEE---------EEESSCEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTS
T ss_pred eeeeeeccCCCcceEEEEECCCCcEEee---------ccCCcccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCC
Confidence 6654 3567899999987753221 12223333 4888 78877765411 12 4688888864
Q ss_pred CCCCcceeeeccC--CCeEEEEEccCCCCCCCCCCEEEEEeCC-----CcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2354 PPTSSRASITCHE--GGARSISVFDNDLGSGSVSPLIVTGGKG-----GDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2354 ~~~k~v~sl~gHs--~~VtSLafsP~dlg~gs~g~lLVSGS~D-----GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
.+ ...+..+. ..+..+.|+|+ ++.|+.++.+ +.|++||+ .+++.....
T Consensus 226 --~~-~~~l~~~~~~~~~~~~~~spd-------g~~l~~~~~~~~~~~~~l~~~d~---~~g~~~~l~------------ 280 (396)
T 3c5m_A 226 --SN-VRKIKEHAEGESCTHEFWIPD-------GSAMAYVSYFKGQTDRVIYKANP---ETLENEEVM------------ 280 (396)
T ss_dssp --CC-CEESSCCCTTEEEEEEEECTT-------SSCEEEEEEETTTCCEEEEEECT---TTCCEEEEE------------
T ss_pred --Cc-eeEeeccCCCccccceEECCC-------CCEEEEEecCCCCccceEEEEEC---CCCCeEEee------------
Confidence 22 22232232 35788999998 6666655443 44999994 444432221
Q ss_pred ccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC-CCCEEEEEe----------------CCCcEEEEECCCCcE
Q 000054 2427 AHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP-NTSLFLTGS----------------KDGDVKLWDAKAAQL 2488 (2548)
Q Consensus 2427 ~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP-dG~~LaSGS----------------~DGtIrIWDl~Tgel 2488 (2548)
. .. ... +.|+| +|+++++++ .++.|++||+.+++.
T Consensus 281 ------------------------~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 281 ------------------------V-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ------------------------E-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred ------------------------e-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 0 01 122 78999 999888765 347899999988764
No 184
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.86 E-value=1.8e-07 Score=110.29 Aligned_cols=196 Identities=11% Similarity=0.113 Sum_probs=135.0
Q ss_pred EEEEEE-cCCCCEEEEEEC-CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSS-HPLRPFFLVGSS-NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~Vsf-SPdG~~LASGS~-DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
...+++ .+++.++++... ++.|++|| .+++.+..+.. .+...+.+++++++|+.+++...++.|.+||
T Consensus 79 p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~---------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 148 (286)
T 1q7f_A 79 PNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGA---------TILQHPRGVTVDNKGRIIVVECKVMRVIIFD 148 (286)
T ss_dssp EEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECT---------TTCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred ceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecC---------ccCCCceEEEEeCCCCEEEEECCCCEEEEEc
Confidence 367777 477777776643 89999999 56666666532 1235689999999999888888889999999
Q ss_pred cCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc--CCCeEEEEEc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH--EGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH--s~~VtSLafs 2375 (2548)
.. ++..... ...++...+ .+++++|+++++.. .++.|++||.. ++.+..+..+ ...+..++++
T Consensus 149 ~~-g~~~~~~------~~~~~~~~p~~i~~~~~g~l~v~~~---~~~~i~~~~~~---g~~~~~~~~~g~~~~p~~i~~d 215 (286)
T 1q7f_A 149 QN-GNVLHKF------GCSKHLEFPNGVVVNDKQEIFISDN---RAHCVKVFNYE---GQYLRQIGGEGITNYPIGVGIN 215 (286)
T ss_dssp TT-SCEEEEE------ECTTTCSSEEEEEECSSSEEEEEEG---GGTEEEEEETT---CCEEEEESCTTTSCSEEEEEEC
T ss_pred CC-CCEEEEe------CCCCccCCcEEEEECCCCCEEEEEC---CCCEEEEEcCC---CCEEEEEccCCccCCCcEEEEC
Confidence 65 3221110 011222222 35888998777653 68899999974 3455555433 3678999999
Q ss_pred cCCCCCCCCCCEEEEEeCCC-cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGG-DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DG-tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
++ +.++++...++ .|.+||. .++.+..+. . ....
T Consensus 216 ~~-------G~l~v~~~~~~~~i~~~~~----~g~~~~~~~---------------------------------~-~~~~ 250 (286)
T 1q7f_A 216 SN-------GEILIADNHNNFNLTIFTQ----DGQLISALE---------------------------------S-KVKH 250 (286)
T ss_dssp TT-------CCEEEEECSSSCEEEEECT----TSCEEEEEE---------------------------------E-SSCC
T ss_pred CC-------CCEEEEeCCCCEEEEEECC----CCCEEEEEc---------------------------------c-cCCC
Confidence 88 67888888776 9999993 344444430 0 1122
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000054 2455 GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
..+.+++++|+|+++++ +.|+.|++|+....
T Consensus 251 ~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 251 AQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 35789999999988777 67999999998653
No 185
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.84 E-value=1.2e-07 Score=128.48 Aligned_cols=246 Identities=7% Similarity=-0.038 Sum_probs=152.9
Q ss_pred EEEEEEEcCCCCEEEEEECC-----CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc-
Q 000054 2221 STRAFSSHPLRPFFLVGSSN-----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT- 2294 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~D-----GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt- 2294 (2548)
.+..++|+|||++||.++.+ ..|++||+.+++.+.... . ...+..++|+|| +.|+.++.|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~---------~~~~~~~~wspD-~~l~~~~~~~~~ 231 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--K---------WVKFSGLAWLGN-DALLYSRFAEPK 231 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--E---------EEESCCCEESTT-SEEEEEECCCC-
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--C---------CceeccEEEECC-CEEEEEEecCcc
Confidence 46889999999999976543 469999999998754311 0 012357899999 99998887664
Q ss_pred -------------EEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccC--CCCeEEEEECCCCCCC
Q 000054 2295 -------------VCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSS--NGINVVVWDTLAPPTS 2357 (2548)
Q Consensus 2295 -------------VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS--~DGtVrIWDl~t~~~k 2357 (2548)
|.+|++.++...... ......+...+. .++|||+.|+...... .+..|.+||+..+..+
T Consensus 232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~l----v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 307 (741)
T 1yr2_A 232 EGQAFQALNYNQTVWLHRLGTPQSADQP----VFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG 307 (741)
T ss_dssp -------CCCCCEEEEEETTSCGGGCEE----EECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC
T ss_pred cccccccCCCCCEEEEEECCCCchhCEE----EeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc
Confidence 888998776421110 111122222233 4899999888765211 1348999998753113
Q ss_pred cceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC----CCcEEEEeCCccccC-ceeeeecCCCCCCCccccccccCC
Q 000054 2358 SRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGK----GGDVGIHDFRYIATG-KTKKHKHSDRGGSSINTCAHADAQ 2432 (2548)
Q Consensus 2358 ~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~----DGtVrLWDLR~l~TG-k~l~tl~~~~~~s~~~~~~vafSp 2432 (2548)
+...+..+...+.... +|+ +..|+..+. ++.|.+||+. ++ ...+.+
T Consensus 308 ~~~~l~~~~~~~~~~~-~~d-------g~~l~~~s~~~~~~~~l~~~d~~---~~~~~~~~l------------------ 358 (741)
T 1yr2_A 308 PVTALIPDLKAQWDFV-DGV-------GDQLWFVSGDGAPLKKIVRVDLS---GSTPRFDTV------------------ 358 (741)
T ss_dssp CCEEEECSSSSCEEEE-EEE-------TTEEEEEECTTCTTCEEEEEECS---SSSCEEEEE------------------
T ss_pred ccEEecCCCCceEEEE-ecc-------CCEEEEEECCCCCCCEEEEEeCC---CCccccEEE------------------
Confidence 1455556665665554 365 556666654 3458999943 32 122221
Q ss_pred CCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC-CCcEEEEecccccccccccCcccCCCC
Q 000054 2433 TGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK-AAQLVYHWSKLHERHTFLQPSSRGFGG 2511 (2548)
Q Consensus 2433 dGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~-Tgell~tL~~~Hs~hsfl~~tl~GH~~ 2511 (2548)
...+...+..++++ ++.++++...||..+||.+. +++.+..+. +. +.
T Consensus 359 -----------------~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~------------~~-~~- 406 (741)
T 1yr2_A 359 -----------------VPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS------------LP-GI- 406 (741)
T ss_dssp -----------------ECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB------------CS-SS-
T ss_pred -----------------ecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc------------CC-CC-
Confidence 13344456677887 66788888999988777654 455555441 11 11
Q ss_pred ceeecEEEEEEcCCe--EE-EE---ECCCcEEEEECCCCcc
Q 000054 2512 VVRAGVTDIQVVSRG--FL-SC---GGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2512 ~V~a~VtsLafSPdG--La-SG---S~DGtIrIWDL~sg~l 2546 (2548)
..|..++++|++ ++ +. ...++|+.||+.++..
T Consensus 407 ---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 407 ---GSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ---CEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred ---eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 235567888987 43 32 2458999999987653
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.82 E-value=2.9e-07 Score=110.39 Aligned_cols=190 Identities=9% Similarity=0.014 Sum_probs=136.9
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000054 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
.+++|++++.|+.|++||..+|+.+.++.... ...+.++.++|+|+.++ +.++.|..||. +++.+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~---------~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~- 70 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK---------GWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWN- 70 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT---------TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEE-
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc---------cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEE-
Confidence 35789999999999999999999988875411 03578899999999888 45788999998 6654321
Q ss_pred cCccceeccCC-cccEE--EEcCCCCEEEEEeccCC-CCeEEEEECCCCCCCcceeeec------cCCCeEEEEEccCCC
Q 000054 2310 PMESCLCFSSH-AMDVS--YITSSGSVIAAAGHSSN-GINVVVWDTLAPPTSSRASITC------HEGGARSISVFDNDL 2379 (2548)
Q Consensus 2310 p~~s~~t~~gH-~~~V~--afSpdGslLATgG~SS~-DGtVrIWDl~t~~~k~v~sl~g------Hs~~VtSLafsP~dl 2379 (2548)
+..+ ...+. .+.++|+++++.+ . ++.|..+|.. ++.+..+.. +......+.+.++
T Consensus 71 -------~~~~~~~~~~~~~~~~dG~~lv~~~---~~~~~v~~vd~~---Gk~l~~~~~~~~~~~~~~~~~~v~~~~~-- 135 (276)
T 3no2_A 71 -------IAAPAGCEMQTARILPDGNALVAWC---GHPSTILEVNMK---GEVLSKTEFETGIERPHAQFRQINKNKK-- 135 (276)
T ss_dssp -------EECCTTCEEEEEEECTTSCEEEEEE---STTEEEEEECTT---SCEEEEEEECCSCSSGGGSCSCCEECTT--
T ss_pred -------EcCCCCccccccEECCCCCEEEEec---CCCCEEEEEeCC---CCEEEEEeccCCCCcccccccCceECCC--
Confidence 1111 12232 3788999999875 4 6777777753 555444431 1123344555665
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
++++++...++.|..|| .. |+.+..+ ..+ ..+.+
T Consensus 136 -----G~~lv~~~~~~~v~~~d---~~-G~~~w~~------------------------------------~~~-~~~~~ 169 (276)
T 3no2_A 136 -----GNYLVPLFATSEVREIA---PN-GQLLNSV------------------------------------KLS-GTPFS 169 (276)
T ss_dssp -----SCEEEEETTTTEEEEEC---TT-SCEEEEE------------------------------------ECS-SCCCE
T ss_pred -----CCEEEEecCCCEEEEEC---CC-CCEEEEE------------------------------------ECC-CCccc
Confidence 78999999999999999 44 7766554 111 23446
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
+...++|+++++++.++.|..+|..+|+.+.++.
T Consensus 170 ~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 170 SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 7788999999999988899999999999999883
No 187
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.82 E-value=2.4e-07 Score=112.76 Aligned_cols=211 Identities=13% Similarity=0.120 Sum_probs=141.5
Q ss_pred CCCeEEEEEccCCCEEEEEeCC------------------------CcEEEEEcCCCcccccccCccceeccCCcccE--
Q 000054 2271 LASISALQFDHYGHRFASAALD------------------------GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDV-- 2324 (2548)
Q Consensus 2271 ~~~VtsVaFSPdG~~LaSGS~D------------------------GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V-- 2324 (2548)
.+.+.+|+++++|+.+++...+ ++|.+||..+++..... -.++....
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-------~~~~~~~p~g 95 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS-------GKNLFYLPHG 95 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-------CTTTCSSEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-------CCCccCCceE
Confidence 4789999999999999888877 47999999877533211 11222222
Q ss_pred EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee---------eccCCCeEEEEEccCCCCCCCCCCEEEEEe-CC
Q 000054 2325 SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI---------TCHEGGARSISVFDNDLGSGSVSPLIVTGG-KG 2394 (2548)
Q Consensus 2325 ~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl---------~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~D 2394 (2548)
.+++++|+++++.. .++.|++||.... ...+..+ .++......++++|++ +.++++.+ .+
T Consensus 96 ia~d~~g~l~v~d~---~~~~v~~~~~~g~-~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~------g~lyv~d~~~~ 165 (329)
T 3fvz_A 96 LSIDTDGNYWVTDV---ALHQVFKLDPHSK-EGPLLILGRSMQPGSDQNHFCQPTDVAVEPST------GAVFVSDGYCN 165 (329)
T ss_dssp EEECTTSCEEEEET---TTTEEEEECTTCS-SCCSEEESBTTBCCCSTTCCSSEEEEEECTTT------CCEEEEECSSC
T ss_pred EEECCCCCEEEEEC---CCCEEEEEeCCCC-eEEEEEecccCCCCCCccccCCCcEEEEeCCC------CeEEEEeCCCC
Confidence 25889999777753 7899999998531 1144444 2445578999999943 77888886 79
Q ss_pred CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC-CCEEEEEe
Q 000054 2395 GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN-TSLFLTGS 2473 (2548)
Q Consensus 2395 GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd-G~~LaSGS 2473 (2548)
+.|++||. .++.+..+........ ...++-.....++++|+ +.++++..
T Consensus 166 ~~I~~~~~----~g~~~~~~~~~g~~~~--------------------------~~~~~~~~p~gia~d~~~g~l~v~d~ 215 (329)
T 3fvz_A 166 SRIVQFSP----SGKFVTQWGEESSGSS--------------------------PRPGQFSVPHSLALVPHLDQLCVADR 215 (329)
T ss_dssp CEEEEECT----TSCEEEEECEECCSSS--------------------------CCTTEESCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEcC----CCCEEEEeccCCCCCC--------------------------CCCcccCCCcEEEEECCCCEEEEEEC
Confidence 99999993 3555554410000000 00123346789999998 78888888
Q ss_pred CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE-------ECCCcEEEEECCCC
Q 000054 2474 KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC-------GGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2474 ~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG-------S~DGtIrIWDL~sg 2544 (2548)
.++.|++||..+|+.+.++. ..+++. .+..++++| + +++. ..+.+|++|++.++
T Consensus 216 ~~~~I~~~~~~~G~~~~~~~------------~~~~~~----~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g 278 (329)
T 3fvz_A 216 ENGRIQCFKTDTKEFVREIK------------HASFGR----NVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSG 278 (329)
T ss_dssp TTTEEEEEETTTCCEEEEEC------------CTTTTT----CEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTC
T ss_pred CCCEEEEEECCCCcEEEEEe------------ccccCC----CcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCC
Confidence 89999999999899988772 122332 245668888 4 2232 33458999998776
Q ss_pred c
Q 000054 2545 Q 2545 (2548)
Q Consensus 2545 ~ 2545 (2548)
.
T Consensus 279 ~ 279 (329)
T 3fvz_A 279 E 279 (329)
T ss_dssp C
T ss_pred e
Confidence 4
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.80 E-value=8.6e-08 Score=115.47 Aligned_cols=238 Identities=11% Similarity=0.064 Sum_probs=148.4
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.++.|++++..++..+.++.++.| .++....+.. +...+.+++|+++|+.++++..++.|.+||.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----------~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~ 75 (333)
T 2dg1_A 9 PTLFYSGKSNSAVPIISESELQTI---TAEPWLEISK----------KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET 75 (333)
T ss_dssp CBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEES----------SCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred ceeeecCCccceeEEeecccCccc---ccceeEEEec----------cCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence 445667777666666778888888 3344444321 235689999999999888888999999999987
Q ss_pred CcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCC----CeEEEEECCCCCCCcceeee--ccCCCeEEEEE
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNG----INVVVWDTLAPPTSSRASIT--CHEGGARSISV 2374 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~D----GtVrIWDl~t~~~k~v~sl~--gHs~~VtSLaf 2374 (2548)
++.... ...+...+. +++++|+++++.. .+ +.|.+||... ......+. .+...+.++.+
T Consensus 76 ~~~~~~--------~~~~~~~~~~i~~~~dg~l~v~~~---~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~i~~ 142 (333)
T 2dg1_A 76 KEIKRP--------FVSHKANPAAIKIHKDGRLFVCYL---GDFKSTGGIFAATENG--DNLQDIIEDLSTAYCIDDMVF 142 (333)
T ss_dssp CCEEEE--------EECSSSSEEEEEECTTSCEEEEEC---TTSSSCCEEEEECTTS--CSCEEEECSSSSCCCEEEEEE
T ss_pred CcEEEE--------eeCCCCCcceEEECCCCcEEEEeC---CCCCCCceEEEEeCCC--CEEEEEEccCccCCcccceEE
Confidence 653221 112233343 4789999887763 44 6899999875 22221222 24457899999
Q ss_pred ccCCCCCCCCCCEEEEEeC------CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEE
Q 000054 2375 FDNDLGSGSVSPLIVTGGK------GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY 2448 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~------DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwd 2448 (2548)
.|+ +.++++... .+.|..+| ..+++.. .+
T Consensus 143 d~~-------g~l~v~~~~~~~~~~~~~l~~~~---~~~~~~~-~~---------------------------------- 177 (333)
T 2dg1_A 143 DSK-------GGFYFTDFRGYSTNPLGGVYYVS---PDFRTVT-PI---------------------------------- 177 (333)
T ss_dssp CTT-------SCEEEEECCCBTTBCCEEEEEEC---TTSCCEE-EE----------------------------------
T ss_pred CCC-------CCEEEEeccccccCCCceEEEEe---CCCCEEE-Ee----------------------------------
Confidence 988 667766553 24455555 2222221 11
Q ss_pred cccCCCCCEEEEEEeCCCCEEE-EEeCCCcEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000054 2449 IPKAHLGSVTRISTVPNTSLFL-TGSKDGDVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2449 i~~gH~~~VtsLafSPdG~~La-SGS~DGtIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
..+...+..++|+|+|+.++ +.+.++.|.+||+.+ ++.+..+.. ..+ ..+.++ ..+..++++++|
T Consensus 178 --~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~----~~~--~~~~~~-----~~~~~i~~d~~G 244 (333)
T 2dg1_A 178 --IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA----TIP--YYFTGH-----EGPDSCCIDSDD 244 (333)
T ss_dssp --EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE----EEE--EECCSS-----SEEEEEEEBTTC
T ss_pred --ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccc----eEE--EecCCC-----CCCCceEECCCC
Confidence 11223467899999998654 445688999999964 443322210 000 001222 124567999999
Q ss_pred --EEEEECCCcEEEEECCCC
Q 000054 2527 --FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2527 --LaSGS~DGtIrIWDL~sg 2544 (2548)
+++...++.|.+||.++.
T Consensus 245 ~l~v~~~~~~~v~~~d~~g~ 264 (333)
T 2dg1_A 245 NLYVAMYGQGRVLVFNKRGY 264 (333)
T ss_dssp CEEEEEETTTEEEEECTTSC
T ss_pred CEEEEEcCCCEEEEECCCCC
Confidence 456667899999998543
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.80 E-value=7e-07 Score=112.26 Aligned_cols=272 Identities=11% Similarity=0.026 Sum_probs=171.5
Q ss_pred cCCCCEEEEEEC-----CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe----------CC
Q 000054 2228 HPLRPFFLVGSS-----NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------LD 2292 (2548)
Q Consensus 2228 SPdG~~LASGS~-----DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS----------~D 2292 (2548)
.|+++.+.+... ++.|.+.|..+++.+.++.. + ..+ .++++|||++++++. .+
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v--G--------~~P--~va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG--G--------FLP--NPVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE--C--------SSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC--C--------CCC--cEEECCCCCEEEEEcccccccccCCCC
Confidence 488888777654 68999999999999888754 1 123 399999999988875 36
Q ss_pred CcEEEEEcCCCcccccccCcc-ceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2293 GTVCTWQLEVGGRSNVRPMES-CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s-~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
+.|.+||..+.+.....+... .....+....-..++|||++++++... .++.|.++|+.+ .+.+..+.. .+.
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~-~~~~VsVID~~t--~~vv~tI~v--~g~-- 181 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-PAPAVGVVDLEG--KAFKRMLDV--PDC-- 181 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS-SSCEEEEEETTT--TEEEEEEEC--CSE--
T ss_pred CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC-CCCeEEEEECCC--CcEEEEEEC--CCc--
Confidence 789999999876433211100 000001122234699999998887411 368999999986 566666642 122
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeec-CCCCCCCcccccccc-CCCCCC-ccCCCCCceEEE
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKH-SDRGGSSINTCAHAD-AQTGSG-SKPGDQNGMLWY 2448 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~-~~~~~s~~~~~~vaf-SpdGk~-v~s~D~sv~Iwd 2448 (2548)
....|.+ ...+++.+.||.+.+.++.. .++...... ..............| .++|++ ..+.++.+++.|
T Consensus 182 ~~~~P~g------~~~~~~~~~DG~~~~v~~~~--~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d 253 (386)
T 3sjl_D 182 YHIFPTA------PDTFFMHCRDGSLAKVAFGT--EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 253 (386)
T ss_dssp EEEEEEE------TTEEEEEETTSCEEEEECCS--SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred ceeecCC------CceeEEECCCCCEEEEECCC--CCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEE
Confidence 1223442 45777888999999999531 244322210 001111111111233 467764 444456677776
Q ss_pred cccCC--------------------CCCEEEEEEeCCCCEEEEEeC----------CCcEEEEECCCCcEEEEecccccc
Q 000054 2449 IPKAH--------------------LGSVTRISTVPNTSLFLTGSK----------DGDVKLWDAKAAQLVYHWSKLHER 2498 (2548)
Q Consensus 2449 i~~gH--------------------~~~VtsLafSPdG~~LaSGS~----------DGtIrIWDl~Tgell~tL~~~Hs~ 2498 (2548)
..... .+....++++|+++.++.... .+.|.+.|+.+++.+.+++
T Consensus 254 ~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~----- 328 (386)
T 3sjl_D 254 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE----- 328 (386)
T ss_dssp CTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-----
T ss_pred CCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-----
Confidence 52211 112334778998888777643 2579999999999999883
Q ss_pred cccccCcccCCCCceeecEEEEEEcCCe---EE-EEECCCcEEEEECCCCc
Q 000054 2499 HTFLQPSSRGFGGVVRAGVTDIQVVSRG---FL-SCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2499 hsfl~~tl~GH~~~V~a~VtsLafSPdG---La-SGS~DGtIrIWDL~sg~ 2545 (2548)
-+ ..++++++++|+ |+ +...+++|.++|..++.
T Consensus 329 --------vg------~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 329 --------MG------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp --------EE------EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred --------CC------CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 11 235678999998 44 45669999999998874
No 190
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.79 E-value=1.1e-06 Score=104.26 Aligned_cols=247 Identities=11% Similarity=0.078 Sum_probs=153.6
Q ss_pred EEEEEcCCCCEEEE-------EECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCc
Q 000054 2223 RAFSSHPLRPFFLV-------GSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGT 2294 (2548)
Q Consensus 2223 ~~VsfSPdG~~LAS-------GS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGt 2294 (2548)
.+++|+++|.++++ +..++.|.+||..+++... +.. + ...++...+.+++++++ |+.+++ +.++.
T Consensus 21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~-~----~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~ 93 (314)
T 1pjx_A 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICK-P----EVNGYGGIPAGCQCDRDANQLFVA-DMRLG 93 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EEC-C----EETTEECCEEEEEECSSSSEEEEE-ETTTE
T ss_pred cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEe-c----ccCCCCCCCceEEEecCCCcEEEE-ECCCC
Confidence 67888899998888 6788999999988776532 211 0 00112367999999999 664544 44457
Q ss_pred EEEEEcCCCccccc-ccCccceeccCCcccEEEEcCCCCEEEEEeccCCC---------------CeEEEEECCCCCCCc
Q 000054 2295 VCTWQLEVGGRSNV-RPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG---------------INVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i-~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D---------------GtVrIWDl~t~~~k~ 2358 (2548)
|.+||.+ ++.... ... ..........-.+++++|+++++.. .+ +.|..||.. ++.
T Consensus 94 l~~~d~~-g~~~~~~~~~--~~~~~~~~~~~i~~d~~g~l~v~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~ 164 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKD--SEGRRMQGCNDCAFDYEGNLWITAP---AGEVAPADYTRSMQEKFGSIYCFTTD---GQM 164 (314)
T ss_dssp EEEEETT-SCEEECCSBC--TTSCBCBCCCEEEECTTSCEEEEEC---BCBCTTSCCCBTTSSSCEEEEEECTT---SCE
T ss_pred EEEEeCC-CCEEEEEecc--CCCccccCCcCEEECCCCCEEEEec---CcccccccccccccCCCCeEEEECCC---CCE
Confidence 8899987 543221 100 0000001111234788998887753 33 466667653 222
Q ss_pred ceeeeccCCCeEEEEEc----cCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC
Q 000054 2359 RASITCHEGGARSISVF----DNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT 2433 (2548)
Q Consensus 2359 v~sl~gHs~~VtSLafs----P~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd 2433 (2548)
..+..+......++++ ++ ++ ++++...++.|.+||+. .+++....
T Consensus 165 -~~~~~~~~~~~~i~~~~~~d~d-------g~~l~v~~~~~~~i~~~~~~--~~g~~~~~-------------------- 214 (314)
T 1pjx_A 165 -IQVDTAFQFPNGIAVRHMNDGR-------PYQLIVAETPTKKLWSYDIK--GPAKIENK-------------------- 214 (314)
T ss_dssp -EEEEEEESSEEEEEEEECTTSC-------EEEEEEEETTTTEEEEEEEE--ETTEEEEE--------------------
T ss_pred -EEeccCCCCcceEEEecccCCC-------CCEEEEEECCCCeEEEEECC--CCCccccc--------------------
Confidence 2233344567889998 87 54 44555678999999942 12221100
Q ss_pred CCCccCCCCCceEEEcccCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCc
Q 000054 2434 GSGSKPGDQNGMLWYIPKAHL-GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGV 2512 (2548)
Q Consensus 2434 Gk~v~s~D~sv~Iwdi~~gH~-~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~ 2512 (2548)
..+....++. ..+..++++++|.++++...++.|.+||..+++.+..+. .+.
T Consensus 215 -----------~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--------------~~~-- 267 (314)
T 1pjx_A 215 -----------KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--------------CPF-- 267 (314)
T ss_dssp -----------EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--------------CSS--
T ss_pred -----------eEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--------------CCC--
Confidence 0111113333 567889999999999988889999999998777655441 121
Q ss_pred eeecEEEEEEcCCe--EE-EEECCCcEEEEECCCC
Q 000054 2513 VRAGVTDIQVVSRG--FL-SCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2513 V~a~VtsLafSPdG--La-SGS~DGtIrIWDL~sg 2544 (2548)
..+.+++++|+| |. +...++.|..|++...
T Consensus 268 --~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 268 --EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp --SCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred --CCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 235677999998 44 5556689999998753
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.79 E-value=4.1e-07 Score=111.11 Aligned_cols=239 Identities=10% Similarity=-0.022 Sum_probs=151.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
..+.+. +++.+++...++.|.+||..+++.+.++.. ......++++++++.+++...++.|.+||..+
T Consensus 47 ~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-----------~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t 114 (328)
T 3dsm_A 47 QSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-----------FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT 114 (328)
T ss_dssp EEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-----------CSSEEEEEEEETTEEEEEEBSCSEEEEEETTT
T ss_pred eEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-----------CCCCcEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence 445543 355666667789999999999998888732 25688999999985444444899999999998
Q ss_pred CcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSG 2382 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~g 2382 (2548)
++.....+.............+. + ++..+.++.. ..++.|.++|+.+ .+.+..+.. ......+.++|+
T Consensus 115 ~~~~~~i~~g~~~~~~~~p~~i~-~--~~~~lyv~~~-~~~~~v~viD~~t--~~~~~~i~~-g~~p~~i~~~~d----- 182 (328)
T 3dsm_A 115 YEITGYIECPDMDMESGSTEQMV-Q--YGKYVYVNCW-SYQNRILKIDTET--DKVVDELTI-GIQPTSLVMDKY----- 182 (328)
T ss_dssp TEEEEEEECTTCCTTTCBCCCEE-E--ETTEEEEEEC-TTCCEEEEEETTT--TEEEEEEEC-SSCBCCCEECTT-----
T ss_pred CeEEEEEEcCCccccCCCcceEE-E--ECCEEEEEcC-CCCCEEEEEECCC--CeEEEEEEc-CCCccceEEcCC-----
Confidence 75432211100000000222333 3 3444444431 0378999999976 455555543 234567888887
Q ss_pred CCCCEEEEEeCC----------CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000054 2383 SVSPLIVTGGKG----------GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2383 s~g~lLVSGS~D----------GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
+++++++..+ +.|.++| ..+++....+. ..
T Consensus 183 --G~l~v~~~~~~~~~~~~~~~~~v~~id---~~t~~v~~~~~-----------------------------------~~ 222 (328)
T 3dsm_A 183 --NKMWTITDGGYEGSPYGYEAPSLYRID---AETFTVEKQFK-----------------------------------FK 222 (328)
T ss_dssp --SEEEEEBCCBCTTCSSCBCCCEEEEEE---TTTTEEEEEEE-----------------------------------CC
T ss_pred --CCEEEEECCCccCCccccCCceEEEEE---CCCCeEEEEEe-----------------------------------cC
Confidence 5666665554 7899999 55565544431 11
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcC-Ce--EEE
Q 000054 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS-RG--FLS 2529 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP-dG--LaS 2529 (2548)
.......++++|+++.++++.. .|.+||..+++..... + +..+. .....++++| ++ +++
T Consensus 223 ~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~--------~----~~~~~----~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 223 LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP--------F----LEFRD----TKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC--------S----BCCCS----SCEEEEEECTTTCCEEEE
T ss_pred CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee--------e----ecCCC----CceEEEEEcCCCCeEEEE
Confidence 1235789999999999888755 8999999988753110 0 11111 2356779999 45 456
Q ss_pred E----ECCCcEEEEECCC
Q 000054 2530 C----GGDGSVKLIQLED 2543 (2548)
Q Consensus 2530 G----S~DGtIrIWDL~s 2543 (2548)
. ..+++|.+||.+.
T Consensus 285 ~~~~y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 285 DAIDYQQQGIVYRYSPQG 302 (328)
T ss_dssp ECTTSSSEEEEEEECTTC
T ss_pred cccccccCCEEEEECCCC
Confidence 5 5789999999884
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.78 E-value=1.2e-06 Score=115.52 Aligned_cols=234 Identities=15% Similarity=0.072 Sum_probs=158.5
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC--CCccc
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE--VGGRS 2306 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~--tgk~i 2306 (2548)
|.+.++++...+++|.++|..+++.+.++.. ...+..+.|+|||+++++++.|+.|.+||+. +++..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-----------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v 233 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-----------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV 233 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-----------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-----------CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe
Confidence 4445667778899999999999998888753 1357799999999999999999999999995 55322
Q ss_pred ccccCccceeccCCcccEEEEc----CCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec----------cCC-CeEE
Q 000054 2307 NVRPMESCLCFSSHAMDVSYIT----SSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC----------HEG-GARS 2371 (2548)
Q Consensus 2307 ~i~p~~s~~t~~gH~~~V~afS----pdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g----------Hs~-~VtS 2371 (2548)
.. ...+....-..++ |+|++++++.. .++.|.++|..+ .+.+..+.. |.. .+..
T Consensus 234 ~~-------i~~G~~P~~ia~s~~~~pDGk~l~v~n~--~~~~v~ViD~~t--~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 234 AE-------IKIGSEARSIETSKMEGWEDKYAIAGAY--WPPQYVIMDGET--LEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp EE-------EECCSEEEEEEECCSTTCTTTEEEEEEE--ETTEEEEEETTT--CCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred EE-------EecCCCCceeEEccccCCCCCEEEEEEc--cCCeEEEEECCC--CcEEEEEeccccccccccccCCCceEE
Confidence 11 1112222223588 69999988863 679999999876 566555442 222 5778
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
+..++.+ ..++++...+|.|.++|.. ..+.+... .+
T Consensus 303 i~~s~~~------~~~vv~~~~~g~v~~vd~~---~~~~~~v~---------------------------------~i-- 338 (567)
T 1qks_A 303 ILASHYR------PEFIVNVKETGKILLVDYT---DLNNLKTT---------------------------------EI-- 338 (567)
T ss_dssp EEECSSS------SEEEEEETTTTEEEEEETT---CSSEEEEE---------------------------------EE--
T ss_pred EEEcCCC------CEEEEEecCCCeEEEEecC---CCccceee---------------------------------ee--
Confidence 8887773 4466666778999999953 22221111 00
Q ss_pred CCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCcEEEEecc-cccccccccCcccCCCCceeecEEEEEEcCC-e--
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGS-KDGDVKLWDAKAAQLVYHWSK-LHERHTFLQPSSRGFGGVVRAGVTDIQVVSR-G-- 2526 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS-~DGtIrIWDl~Tgell~tL~~-~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd-G-- 2526 (2548)
........+.|+|+|++++++. .+++|.++|+.+++++..++- .. ..|-+. .+ . -++|+ |
T Consensus 339 ~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~----------~Phpg~---g~-~-~~~p~~g~v 403 (567)
T 1qks_A 339 SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ----------TPHPGR---GA-N-FVHPTFGPV 403 (567)
T ss_dssp ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS----------SBCCTT---CE-E-EEETTTEEE
T ss_pred eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc----------CCCCcc---ce-e-eECCCCCcE
Confidence 1223455788999999987776 578999999999998887731 10 122211 11 1 25787 4
Q ss_pred EEEEE-CCCcEEEEECCC
Q 000054 2527 FLSCG-GDGSVKLIQLED 2543 (2548)
Q Consensus 2527 LaSGS-~DGtIrIWDL~s 2543 (2548)
.+++. .+++|.++|.++
T Consensus 404 ~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 404 WATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEBSSSSEEEEEECCT
T ss_pred EEeCCCCCCeEEEecCCC
Confidence 44443 578999999876
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.69 E-value=6.4e-07 Score=120.28 Aligned_cols=237 Identities=10% Similarity=-0.013 Sum_probs=139.6
Q ss_pred CCCCEEEEEECCC---eEEEEEc--CCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-----EEeCCCcEEEE
Q 000054 2229 PLRPFFLVGSSNT---HIYLWEF--GKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-----SAALDGTVCTW 2298 (2548)
Q Consensus 2229 PdG~~LASGS~DG---sVrLWDl--~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-----SGS~DGtVrVW 2298 (2548)
|+|.+++....++ .-.||.. ..++....+.... ....|...+.+++|||||++|+ .|+.+.+|++|
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~----~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~ 152 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNG----WSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVI 152 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGG----SSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHH----hccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEE
Confidence 7888887655443 3444544 3444332222100 1123445799999999999998 34445789999
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCe-------------EEEEECCCCCCC--cceeee
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGIN-------------VVVWDTLAPPTS--SRASIT 2363 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGt-------------VrIWDl~t~~~k--~v~sl~ 2363 (2548)
|+.+++..... .+......-.+|+|||+.|+.+. .|.. |++|++.++..+ .+....
T Consensus 153 dl~tg~~~~~~------~~~~~~~~~~~wspDg~~l~~~~---~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~ 223 (695)
T 2bkl_A 153 DVDSGEWSKVD------VIEGGKYATPKWTPDSKGFYYEW---LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT 223 (695)
T ss_dssp ETTTCCBCSSC------CBSCCTTCCCEECTTSSEEEEEE---CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC
T ss_pred ECCCCCCcCCc------ccCcccccceEEecCCCEEEEEE---ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC
Confidence 99988643000 11222112235999999998875 5544 999999864322 233333
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC----cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccC
Q 000054 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGG----DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKP 2439 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG----tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s 2439 (2548)
.|...+.++.|+|+ +++|+.++.++ .|.+|| ..+++. ..+
T Consensus 224 ~~~~~~~~~~~SpD-------G~~l~~~~~~~~~~~~l~~~~---~~~~~~-~~l------------------------- 267 (695)
T 2bkl_A 224 GDPTTFLQSDLSRD-------GKYLFVYILRGWSENDVYWKR---PGEKDF-RLL------------------------- 267 (695)
T ss_dssp CCTTCEEEEEECTT-------SCCEEEEEEETTTEEEEEEEC---TTCSSC-EEE-------------------------
T ss_pred CCCEEEEEEEECCC-------CCEEEEEEeCCCCceEEEEEc---CCCCce-EEe-------------------------
Confidence 45668899999999 67777666555 555555 223322 221
Q ss_pred CCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEe---CCCcEEEEECCCCcE--EEEecccccccccccCcccCCCCcee
Q 000054 2440 GDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGS---KDGDVKLWDAKAAQL--VYHWSKLHERHTFLQPSSRGFGGVVR 2514 (2548)
Q Consensus 2440 ~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS---~DGtIrIWDl~Tgel--l~tL~~~Hs~hsfl~~tl~GH~~~V~ 2514 (2548)
..+...+....+ ++|.+++++. .++.|.+||+.+++. ...+ +..+..
T Consensus 268 -----------~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l-------------~~~~~~--- 319 (695)
T 2bkl_A 268 -----------VKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEI-------------VPEDSS--- 319 (695)
T ss_dssp -----------EECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEE-------------ECCCSS---
T ss_pred -----------ecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEE-------------ecCCCC---
Confidence 223334455556 5566544444 258999999987652 1222 112211
Q ss_pred ecEEEEEEcCCe-EEEEECCCcEEEEECC
Q 000054 2515 AGVTDIQVVSRG-FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2515 a~VtsLafSPdG-LaSGS~DGtIrIWDL~ 2542 (2548)
..+.+++++.+. +++...|+..++|.++
T Consensus 320 ~~l~~~~~~~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 320 ASLLSVSIVGGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp CEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CeEEEEEEECCEEEEEEEECCEEEEEEEe
Confidence 124556787444 7788999998888664
No 194
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.64 E-value=5.1e-06 Score=109.63 Aligned_cols=245 Identities=11% Similarity=0.010 Sum_probs=159.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcC--CCceeEEEeccCCCCCCCCCCCCCeEEEEEc----cCCCEEEEEeCC-Cc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFD----HYGHRFASAALD-GT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~--tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFS----PdG~~LaSGS~D-Gt 2294 (2548)
...+.++|||+++.+++.|+.|.+||+. +++.+..+.. + .....++|+ |+|++++++... ++
T Consensus 199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G---------~~P~~ia~s~~~~pDGk~l~v~n~~~~~ 267 (567)
T 1qks_A 199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--G---------SEARSIETSKMEGWEDKYAIAGAYWPPQ 267 (567)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--C---------SEEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--C---------CCCceeEEccccCCCCCEEEEEEccCCe
Confidence 3578899999999999999999999996 7777776642 1 346799999 699988877654 89
Q ss_pred EEEEEcCCCcccccccCccc--------------eeccCCc---------------------------------ccE--E
Q 000054 2295 VCTWQLEVGGRSNVRPMESC--------------LCFSSHA---------------------------------MDV--S 2325 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~--------------~t~~gH~---------------------------------~~V--~ 2325 (2548)
|.++|..+.+.+...+.... .....|. ... .
T Consensus 268 v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~ 347 (567)
T 1qks_A 268 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG 347 (567)
T ss_dssp EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEE
T ss_pred EEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCc
Confidence 99999877654432221100 0000000 000 1
Q ss_pred EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec-----cCC-CeEEEEEccCCCCCCCCCCEEEEEe-CCCcEE
Q 000054 2326 YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC-----HEG-GARSISVFDNDLGSGSVSPLIVTGG-KGGDVG 2398 (2548)
Q Consensus 2326 afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g-----Hs~-~VtSLafsP~dlg~gs~g~lLVSGS-~DGtVr 2398 (2548)
.|+|+|++++++. ..++.|.++|+.+ .+.+..+.. |.+ ++. + ++|+. +...+++. .+++|.
T Consensus 348 ~~~pdgr~~~va~--~~sn~V~ViD~~t--~kl~~~i~vgg~~Phpg~g~~-~-~~p~~------g~v~~t~~~g~~~Vs 415 (567)
T 1qks_A 348 GLDGSHRYFITAA--NARNKLVVIDTKE--GKLVAIEDTGGQTPHPGRGAN-F-VHPTF------GPVWATSHMGDDSVA 415 (567)
T ss_dssp EECTTSCEEEEEE--GGGTEEEEEETTT--TEEEEEEECSSSSBCCTTCEE-E-EETTT------EEEEEEEBSSSSEEE
T ss_pred eECCCCCEEEEEe--CCCCeEEEEECCC--CcEEEEEeccCcCCCCcccee-e-ECCCC------CcEEEeCCCCCCeEE
Confidence 3889999988776 2578999999986 444443332 433 333 2 46763 55666664 568999
Q ss_pred EEeCCccc----cCceeeeecCCCCCCCccccccccCCCCCC--ccCC-------CCCceEEEcccC-------------
Q 000054 2399 IHDFRYIA----TGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPG-------DQNGMLWYIPKA------------- 2452 (2548)
Q Consensus 2399 LWDLR~l~----TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~-------D~sv~Iwdi~~g------------- 2452 (2548)
++|..... ..+.++.+.... .....+..+|+++. +... .+.+.++|+...
T Consensus 416 vid~~~~~~~~~~~kvv~~i~~~g----~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~ 491 (567)
T 1qks_A 416 LIGTDPEGHPDNAWKILDSFPALG----GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLP 491 (567)
T ss_dssp EEECCTTTCTTTBTSEEEEEECSC----SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEEC
T ss_pred EecCCCCCCccccCEEEEEEecCC----CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEec
Confidence 99953100 045556653222 11234567888886 2221 246778875432
Q ss_pred ---------CCCCEEEEEEeCCCCEEEEEe-----CCCcEEEEECCCCcEEEEec
Q 000054 2453 ---------HLGSVTRISTVPNTSLFLTGS-----KDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2453 ---------H~~~VtsLafSPdG~~LaSGS-----~DGtIrIWDl~Tgell~tL~ 2493 (2548)
-...+..+.|+|+|+.+..+. .++.|.|+|.++++++.+++
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 492 IAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp HHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 023568889999998876653 37999999999999998884
No 195
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.60 E-value=1.6e-06 Score=116.52 Aligned_cols=206 Identities=13% Similarity=0.086 Sum_probs=137.4
Q ss_pred EEEEEcCCCCEEEEEECCCe----------------EEEEEcCCCcee--EEEeccCCCCCCCCCCCCCeEEEEEccCCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTH----------------IYLWEFGKDKAT--ATYGVLPAANVPPPYALASISALQFDHYGH 2284 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGs----------------VrLWDl~tg~~l--~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~ 2284 (2548)
..++|+|||+.|+.++.++. |++|++.+++.. ..+.. ..|...+..+.|+|||+
T Consensus 174 ~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~--------~~~~~~~~~~~~SpDg~ 245 (710)
T 2xdw_A 174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF--------PDEPKWMGGAELSDDGR 245 (710)
T ss_dssp CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC--------TTCTTCEEEEEECTTSC
T ss_pred ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc--------CCCCeEEEEEEEcCCCC
Confidence 46789999999999888766 999999887632 22221 12335688999999999
Q ss_pred EEEEEeC-----CCcEEEEEcCC------CcccccccCccceeccCCcccEE-EEcCCCCEEEEEecc-CCCCeEEEEEC
Q 000054 2285 RFASAAL-----DGTVCTWQLEV------GGRSNVRPMESCLCFSSHAMDVS-YITSSGSVIAAAGHS-SNGINVVVWDT 2351 (2548)
Q Consensus 2285 ~LaSGS~-----DGtVrVWDl~t------gk~i~i~p~~s~~t~~gH~~~V~-afSpdGslLATgG~S-S~DGtVrIWDl 2351 (2548)
+|+.++. +..|.+||+.+ +.. ....+..+...+. .++++|+.|+..+.. ..++.|.+||+
T Consensus 246 ~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~ 318 (710)
T 2xdw_A 246 YVLLSIREGCDPVNRLWYCDLQQESNGITGIL-------KWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDF 318 (710)
T ss_dssp EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-------CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred EEEEEEEccCCCccEEEEEECcccccccCCcc-------ceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeC
Confidence 9988765 56899999976 321 1112333333333 478888877766521 02347999998
Q ss_pred CCCCCCcceeeeccCC--CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccc
Q 000054 2352 LAPPTSSRASITCHEG--GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHA 2429 (2548)
Q Consensus 2352 ~t~~~k~v~sl~gHs~--~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~va 2429 (2548)
..+.......+..|.. .+..+.|+++ +.++++...|+..+||-+. +.+|+.+..+
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~lv~~~~~~g~~~l~~~~-~~~g~~~~~l--------------- 375 (710)
T 2xdw_A 319 TDPEESKWKVLVPEHEKDVLEWVACVRS-------NFLVLCYLHDVKNTLQLHD-LATGALLKIF--------------- 375 (710)
T ss_dssp TSCCGGGCEEEECCCSSCEEEEEEEETT-------TEEEEEEEETTEEEEEEEE-TTTCCEEEEE---------------
T ss_pred CCCCcccceeccCCCCCCeEEEEEEEcC-------CEEEEEEEECCEEEEEEEE-CCCCCEEEec---------------
Confidence 7632113355555554 6888888855 5688888889865544321 4455554444
Q ss_pred cCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEE-e---CCCcEEEEECCCCc
Q 000054 2430 DAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTG-S---KDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2430 fSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSG-S---~DGtIrIWDl~Tge 2487 (2548)
..+.+.|..+.++|+++.++.. + ..++|..||+.+++
T Consensus 376 ---------------------~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 376 ---------------------PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ---------------------CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ---------------------CCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 3456678889999988755533 3 25789999999877
No 196
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.59 E-value=1.7e-06 Score=116.51 Aligned_cols=243 Identities=11% Similarity=0.045 Sum_probs=146.4
Q ss_pred EEEEEEEcCCCCEEEEE-----ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc-
Q 000054 2221 STRAFSSHPLRPFFLVG-----SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT- 2294 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASG-----S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt- 2294 (2548)
.+..++|+|||+++|-+ +.+..|++||+.+|+.+.... . ......++|+ ||+.|+.++.|+.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~---------~~k~~~~~Ws-Dg~~l~y~~~~~~~ 197 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--K---------DVKFSGISWL-GNEGFFYSSYDKPD 197 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--E---------EEESCCCEEE-TTTEEEEEESSCCC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--C---------CceeccEEEe-CCCEEEEEEecCcc
Confidence 36788999999999843 333579999999998654311 0 0113567899 9999999988744
Q ss_pred ------------EEEEEcCCCcccccccCccceeccC-CcccEE--EEcCCCCEEEEEecc-CCCCeEEEEECCCCCCCc
Q 000054 2295 ------------VCTWQLEVGGRSNVRPMESCLCFSS-HAMDVS--YITSSGSVIAAAGHS-SNGINVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2295 ------------VrVWDl~tgk~i~i~p~~s~~t~~g-H~~~V~--afSpdGslLATgG~S-S~DGtVrIWDl~t~~~k~ 2358 (2548)
|.+|++.++...... ...... |...+. .++|||+.++....+ ..++.|.++|+..+. ..
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~----v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~-~~ 272 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRL----VFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN-AP 272 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEE----EESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT-CC
T ss_pred cccccccCCCcEEEEEECCCCcccceE----EEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC-Cc
Confidence 999999876432110 111122 222222 489999987654321 133589999997642 24
Q ss_pred ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCC---CcEEEEeCCccccCce--eeeecCCCCCCCccccccccCCC
Q 000054 2359 RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKG---GDVGIHDFRYIATGKT--KKHKHSDRGGSSINTCAHADAQT 2433 (2548)
Q Consensus 2359 v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~D---GtVrLWDLR~l~TGk~--l~tl~~~~~~s~~~~~~vafSpd 2433 (2548)
...+..+.+..... +++++ +.+++++..+ +.|..+|+. ++.. .+.+
T Consensus 273 ~~~l~~~~~~~~~~-~~~~g------~~l~~~t~~~~~~~~l~~~d~~---~~~~~~~~~l------------------- 323 (693)
T 3iuj_A 273 LLTVQGDLDADVSL-VDNKG------STLYLLTNRDAPNRRLVTVDAA---NPGPAHWRDL------------------- 323 (693)
T ss_dssp CEEEECSSSSCEEE-EEEET------TEEEEEECTTCTTCEEEEEETT---SCCGGGCEEE-------------------
T ss_pred eEEEeCCCCceEEE-EeccC------CEEEEEECCCCCCCEEEEEeCC---CCCccccEEE-------------------
Confidence 45566666666665 45552 4455555544 578888843 2221 1111
Q ss_pred CCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeC-CC--cEEEEECCCCcEEEEecccccccccccCcccCCC
Q 000054 2434 GSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK-DG--DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFG 2510 (2548)
Q Consensus 2434 Gk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~-DG--tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~ 2510 (2548)
..|...+. .|+++++.|+.... || .|++||+..+ ....+. +.+.
T Consensus 324 -----------------~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~------------~p~~- 370 (693)
T 3iuj_A 324 -----------------IPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVA------------LPGL- 370 (693)
T ss_dssp -----------------ECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEEC------------CSSS-
T ss_pred -----------------ecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEee------------cCCC-
Confidence 23444444 88999988877665 44 6899998754 444441 1111
Q ss_pred CceeecEEEEEEcCCe--EEEEECC----CcEEEEECCCCcc
Q 000054 2511 GVVRAGVTDIQVVSRG--FLSCGGD----GSVKLIQLEDYQH 2546 (2548)
Q Consensus 2511 ~~V~a~VtsLafSPdG--LaSGS~D----GtIrIWDL~sg~l 2546 (2548)
+ .+..+.+++++ ++....+ ++|..||+.++..
T Consensus 371 ~----~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 371 G----SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp S----EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred c----eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 1 23445677777 4433333 7899999877643
No 197
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.58 E-value=2.6e-05 Score=91.41 Aligned_cols=233 Identities=11% Similarity=0.059 Sum_probs=154.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
..++.+.++|.++++...++.|.+||.. ++.. .+.. + .+...+.+++++++|+.+++...++.|..+|..
T Consensus 22 p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~-~-------~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 22 PYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEV-P-------TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEEC-S-------STTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred cceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEEC-C-------CCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 5788888999988887788999999987 5433 2321 1 123679999999999988877778899999987
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc-eeeeccCCCeEEEEEccCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR-ASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v-~sl~gHs~~VtSLafsP~d 2378 (2548)
++.... ........+. ++.++|+++++.. .++.|..+|.. ++.. ..+......+.++++.++
T Consensus 92 -g~~~~~-------~~~~~~~~~~~i~~~~~g~l~v~~~---~~~~i~~~~~~---g~~~~~~~~~~~~~~~~i~~d~~- 156 (300)
T 2qc5_A 92 -GGFTEY-------PLPQPDSGPYGITEGLNGDIWFTQL---NGDRIGKLTAD---GTIYEYDLPNKGSYPAFITLGSD- 156 (300)
T ss_dssp -SCEEEE-------ECSSTTCCEEEEEECSTTCEEEEET---TTTEEEEECTT---SCEEEEECSSTTCCEEEEEECTT-
T ss_pred -CCeEEe-------cCCCCCCCCccceECCCCCEEEEcc---CCCeEEEECCC---CCEEEccCCCCCCCceeEEECCC-
Confidence 532211 1111112232 4778888877753 57889999875 2222 222234567899999887
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT 2458 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt 2458 (2548)
+.+.++...++.|..+|. +++..... ...+...+.
T Consensus 157 ------g~l~v~~~~~~~i~~~~~----~g~~~~~~-----------------------------------~~~~~~~~~ 191 (300)
T 2qc5_A 157 ------NALWFTENQNNSIGRITN----TGKLEEYP-----------------------------------LPTNAAAPV 191 (300)
T ss_dssp ------SSEEEEETTTTEEEEECT----TCCEEEEE-----------------------------------CSSTTCCEE
T ss_pred ------CCEEEEecCCCeEEEECC----CCcEEEee-----------------------------------CCCCCCCcc
Confidence 567777666888999983 23332211 012345678
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EE-EEECCCcE
Q 000054 2459 RISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FL-SCGGDGSV 2536 (2548)
Q Consensus 2459 sLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-La-SGS~DGtI 2536 (2548)
+++++++|.+.++....+.|.+||. +++..... +..+. ..+.+++++++| +. +...++.|
T Consensus 192 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-------------~~~~~----~~~~~i~~d~~g~l~v~~~~~~~i 253 (300)
T 2qc5_A 192 GITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-------------IPTPN----ARPHAITAGKNSEIWFTEWGANQI 253 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-------------CSSTT----CCEEEEEECSTTCEEEEETTTTEE
T ss_pred eEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-------------CCCCC----CCceEEEECCCCCEEEeccCCCeE
Confidence 9999999988887777788999998 55544321 01111 235677999998 44 44456889
Q ss_pred EEEECC
Q 000054 2537 KLIQLE 2542 (2548)
Q Consensus 2537 rIWDL~ 2542 (2548)
..|+..
T Consensus 254 ~~~~~~ 259 (300)
T 2qc5_A 254 GRITND 259 (300)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 998874
No 198
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.58 E-value=4.2e-06 Score=106.71 Aligned_cols=270 Identities=11% Similarity=0.030 Sum_probs=165.1
Q ss_pred CCCCEEEEEEC-C----CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe----------CCC
Q 000054 2229 PLRPFFLVGSS-N----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------LDG 2293 (2548)
Q Consensus 2229 PdG~~LASGS~-D----GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS----------~DG 2293 (2548)
|+++.+.+... + +.|.++|..+++.+.++.. + ..+ .++++|||++++++. .++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v--G--------~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~ 149 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG--G--------FLP--HPVAAEDGSFFAQASTVFERIARGKRTD 149 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE--C--------SSC--EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC--C--------CCC--ceEECCCCCEEEEEeccccccccCCCCC
Confidence 45565554433 2 6999999999999988864 1 133 799999999988886 467
Q ss_pred cEEEEEcCCCcccccccCccceec-cCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCF-SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~-~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
.|.++|..+++.....+......+ .+....-..++|||++++++... .++.|.+.|+.+ .+.+..+.. ... .
T Consensus 150 ~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~-~~~~VsVID~~t--~kvv~~I~v--~g~--~ 222 (426)
T 3c75_H 150 YVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS-PAPAVGVVDLEG--KTFDRMLDV--PDC--Y 222 (426)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS-SSCEEEEEETTT--TEEEEEEEC--CSE--E
T ss_pred EEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC-CCCeEEEEECCC--CeEEEEEEc--CCc--e
Confidence 999999998864432211000000 01111123589999999887411 267899999986 555555543 121 2
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeec-CCCCCCCccccccccCCCCCC--ccCCCCCceEEEc
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKH-SDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI 2449 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~-~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi 2449 (2548)
...|.. ...+++.+.||.+.+.|. .+++...... .......+......+.+++.. .....+.+.+.|.
T Consensus 223 ~~~p~g------~~~~v~~~~dG~~~~V~~---~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~ 293 (426)
T 3c75_H 223 HIFPAS------PTVFYMNCRDGSLARVDF---ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADL 293 (426)
T ss_dssp EEEEEE------TTEEEEEETTSSEEEEEC---CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEE
T ss_pred eeccCC------CcEEEEEcCCCCEEEEEC---CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEec
Confidence 334442 357777888999888884 3344332110 001111122223345666553 3333455666664
Q ss_pred ccCC--------------------CCCEEEEEEeCCCCEEEEEeC----------CCcEEEEECCCCcEEEEeccccccc
Q 000054 2450 PKAH--------------------LGSVTRISTVPNTSLFLTGSK----------DGDVKLWDAKAAQLVYHWSKLHERH 2499 (2548)
Q Consensus 2450 ~~gH--------------------~~~VtsLafSPdG~~LaSGS~----------DGtIrIWDl~Tgell~tL~~~Hs~h 2499 (2548)
.... ......++++|+++.++.... ++.|.+.|..+++.+.+++-
T Consensus 294 ~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----- 368 (426)
T 3c75_H 294 TAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL----- 368 (426)
T ss_dssp CSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-----
T ss_pred cCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-----
Confidence 2110 011123789999887766642 35799999999999998831
Q ss_pred ccccCcccCCCCceeecEEEEEEcCCe---EEEEE-CCCcEEEEECCCCc
Q 000054 2500 TFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCG-GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2500 sfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS-~DGtIrIWDL~sg~ 2545 (2548)
+ .....++|+|+| +++.. .+++|.++|+.++.
T Consensus 369 --------g------~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 369 --------G------HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp --------E------EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred --------C------CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 1 124677999998 55555 69999999998864
No 199
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.56 E-value=1.6e-05 Score=95.24 Aligned_cols=234 Identities=9% Similarity=0.072 Sum_probs=144.8
Q ss_pred EEEEEEcCC-CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
.-+..|+|+ +.++++...++.|..||..+++. ..+. ....+.+++++++|+++++ . ++.|.+||.
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-----------~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~ 80 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-----------MDAPVSSVALRQSGGYVAT-I-GTKFCALNW 80 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-----------CSSCEEEEEEBTTSSEEEE-E-TTEEEEEET
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-----------CCCceEEEEECCCCCEEEE-E-CCeEEEEEC
Confidence 357788895 45666777889999999988764 2322 1267999999999995544 4 568999999
Q ss_pred CCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccC------CCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSS------NGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS------~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
++++...+.... .......+. .++++|+++++..... ......+|.+... ++ ...+..+....+.+
T Consensus 81 ~~g~~~~~~~~~----~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~-~~~~~~~~~~pngi 154 (297)
T 3g4e_A 81 KEQSAVVLATVD----NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HH-VKKYFDQVDISNGL 154 (297)
T ss_dssp TTTEEEEEEECC----TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SC-EEEEEEEESBEEEE
T ss_pred CCCcEEEEEecC----CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CC-EEEEeeccccccce
Confidence 876532211100 000112222 4789999777542100 0123445554421 22 22233444567899
Q ss_pred EEccCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2373 SVFDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2373 afsP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
+|+|+ ++ ++++.+.++.|.+||+. ..++..... +++..+.
T Consensus 155 ~~spd-------g~~lyv~~~~~~~i~~~~~d-~~~G~~~~~-------------------------------~~~~~~~ 195 (297)
T 3g4e_A 155 DWSLD-------HKIFYYIDSLSYSVDAFDYD-LQTGQISNR-------------------------------RSVYKLE 195 (297)
T ss_dssp EECTT-------SCEEEEEEGGGTEEEEEEEC-TTTCCEEEE-------------------------------EEEEECC
T ss_pred EEcCC-------CCEEEEecCCCCcEEEEecc-CCCCcccCc-------------------------------EEEEECC
Confidence 99998 55 55666778999999943 133432110 1111112
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEc-CCe---E
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVV-SRG---F 2527 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafS-PdG---L 2527 (2548)
.+.+....++++++|.+.++...++.|.+||..+|+.+.++. .+. ..+++++|. |++ +
T Consensus 196 ~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~--------------~p~----~~~t~~~f~g~d~~~L~ 257 (297)
T 3g4e_A 196 KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK--------------LPV----DKTTSCCFGGKNYSEMY 257 (297)
T ss_dssp GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE--------------CSS----SBEEEEEEESGGGCEEE
T ss_pred CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE--------------CCC----CCceEEEEeCCCCCEEE
Confidence 234567889999999988888888899999999999988772 111 235788998 776 4
Q ss_pred EEEEC
Q 000054 2528 LSCGG 2532 (2548)
Q Consensus 2528 aSGS~ 2532 (2548)
+|...
T Consensus 258 vt~~~ 262 (297)
T 3g4e_A 258 VTCAR 262 (297)
T ss_dssp EEEBC
T ss_pred EEcCC
Confidence 45443
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.55 E-value=4.1e-06 Score=97.37 Aligned_cols=196 Identities=11% Similarity=0.103 Sum_probs=131.4
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.+++++++|+++++.. ++.|.+||...... ..+.. .....+.+++++++|+.+++...++.|.+|+..+
T Consensus 70 ~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~---------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 138 (270)
T 1rwi_B 70 QGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPF---------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS 138 (270)
T ss_dssp CCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCC---------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC
T ss_pred ceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeec---------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCC
Confidence 5677889999666655 88999999776543 22210 1125689999999999888777889999997654
Q ss_pred CcccccccCccceeccC-CcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2303 GGRSNVRPMESCLCFSS-HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~g-H~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
...... ...+ ....-.+++++|+++++.. .++.|.+||... .........+...+.++++.++
T Consensus 139 ~~~~~~-------~~~~~~~p~~i~~~~~g~l~v~~~---~~~~i~~~~~~~--~~~~~~~~~~~~~p~~i~~d~~---- 202 (270)
T 1rwi_B 139 KTQTVL-------PFTGLNDPDGVAVDNSGNVYVTDT---DNNRVVKLEAES--NNQVVLPFTDITAPWGIAVDEA---- 202 (270)
T ss_dssp CSCEEC-------CCCSCCSCCCEEECTTCCEEEEEG---GGTEEEEECTTT--CCEEECCCSSCCSEEEEEECTT----
T ss_pred ceeEee-------ccccCCCceeEEEeCCCCEEEEEC---CCCEEEEEecCC--CceEeecccCCCCceEEEECCC----
Confidence 322110 0111 1111235788998776653 578999999864 2222222233367899999887
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEE
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIS 2461 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLa 2461 (2548)
+.+.++...++.|.+||.. ..... .. ...+...+.+++
T Consensus 203 ---g~l~v~~~~~~~v~~~~~~---~~~~~-~~-----------------------------------~~~~~~~p~~i~ 240 (270)
T 1rwi_B 203 ---GTVYVTEHNTNQVVKLLAG---STTST-VL-----------------------------------PFTGLNTPLAVA 240 (270)
T ss_dssp ---CCEEEEETTTSCEEEECTT---CSCCE-EC-----------------------------------CCCSCSCEEEEE
T ss_pred ---CCEEEEECCCCcEEEEcCC---CCcce-ee-----------------------------------ccCCCCCceeEE
Confidence 6678887788999999942 22111 11 012335688999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCc
Q 000054 2462 TVPNTSLFLTGSKDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2462 fSPdG~~LaSGS~DGtIrIWDl~Tge 2487 (2548)
++|+|+++++...++.|++++....+
T Consensus 241 ~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 241 VDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 99999999998999999999987554
No 201
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.54 E-value=1.5e-05 Score=100.96 Aligned_cols=263 Identities=11% Similarity=0.022 Sum_probs=155.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC--cEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG--TVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG--tVrVWD 2299 (2548)
...++++++++++++...++.|++||..++........ . .... ++|+++++.+++++.++ .|.+++
T Consensus 133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~----------~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-F----------KGGK-PAVTKDKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-C----------CBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-C----------CCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence 37888899999888888889999999988776555432 0 2223 89999999999998876 788888
Q ss_pred cCCCcccccccCcccee-ccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-----eccCCCe-E-E
Q 000054 2300 LEVGGRSNVRPMESCLC-FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-----TCHEGGA-R-S 2371 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t-~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-----~gHs~~V-t-S 2371 (2548)
...+....... .... ...+... .+++|++..|+.+. .++.|..||.... . ...+ .++.... . .
T Consensus 201 ~~~~~~~~~~g--~~~~~~~~~p~~-iav~p~~g~lyv~d---~~~~I~~~d~~~~--~-~~~~~~~~~~g~~~~~P~~~ 271 (409)
T 3hrp_A 201 KASGWAPTRIG--QLGSTFSGKIGA-VALDETEEWLYFVD---SNKNFGRFNVKTQ--E-VTLIKQLELSGSLGTNPGPY 271 (409)
T ss_dssp GGGTTCEEEEE--ECCTTSCSCCCB-CEECTTSSEEEEEC---TTCEEEEEETTTC--C-EEEEEECCCCSCCCCSSCCE
T ss_pred cCCCceeEEee--eccchhcCCcEE-EEEeCCCCeEEEEE---CCCcEEEEECCCC--C-EEEEecccccCCCCCCcccc
Confidence 76553211110 0000 0111122 24788444444454 5789999998752 2 2222 1222222 3 8
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
++|+|++ +.++++-..++.|+.||.. ++ +..+..... . .+..++ ....
T Consensus 272 ia~~p~~------g~lyv~d~~~~~I~~~~~~----g~-~~~~~g~~~------------~----~g~~dg-----~~~~ 319 (409)
T 3hrp_A 272 LIYYFVD------SNFYMSDQNLSSVYKITPD----GE-CEWFCGSAT------------Q----KTVQDG-----LREE 319 (409)
T ss_dssp EEEETTT------TEEEEEETTTTEEEEECTT----CC-EEEEEECTT------------C----CSCBCE-----EGGG
T ss_pred EEEeCCC------CEEEEEeCCCCEEEEEecC----CC-EEEEEeCCC------------C----CCcCCC-----cccc
Confidence 9999964 6677777788999999943 22 222100000 0 000000 0001
Q ss_pred CCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCcEEEEecccccccccccCcccCCC-CceeecEEEEEEcCCe--E
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGS-KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFG-GVVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS-~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~-~~V~a~VtsLafSPdG--L 2527 (2548)
..-.....++++|+|+++++-+ .++.|+.||+.+++.. ++.+......+ ..|.. ..-......++++++| +
T Consensus 320 ~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~----~~g~~~~~~~~~P~giavd~~g~ly 394 (409)
T 3hrp_A 320 ALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQ----IDGTPLEATFNYPYDICYDGEGGYW 394 (409)
T ss_dssp CBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSC----CCBSTTTCCBSSEEEEEECSSSEEE
T ss_pred cEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCc----CCCChhceEeCCceEEEEcCCCCEE
Confidence 2234578999999999888887 8899999998888754 33111000000 00100 0001235788999999 5
Q ss_pred EEEECCCcEEEEECC
Q 000054 2528 LSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2528 aSGS~DGtIrIWDL~ 2542 (2548)
++-..+++|+.++++
T Consensus 395 Vad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 395 IAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEESTTCEEEEEEEC
T ss_pred EEECCCCeEEEEEeC
Confidence 677778888888763
No 202
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.48 E-value=1.2e-06 Score=110.35 Aligned_cols=178 Identities=10% Similarity=0.032 Sum_probs=119.8
Q ss_pred EEEEEEEcCCCCEEEEEECCCeEEEEEcCCCc-----------eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE
Q 000054 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK-----------ATATYGVLPAANVPPPYALASISALQFDHYGHRFASA 2289 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~-----------~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG 2289 (2548)
.+..+++++...++++|+.++ +++|++...+ ..... .+.+ |+.|+| +++.|+++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-----------~lp~-V~~l~f--d~~~L~v~ 103 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-----------EIPD-VIFVCF--HGDQVLVS 103 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-----------ECTT-EEEEEE--ETTEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-----------eCCC-eeEEEE--CCCEEEEE
Confidence 357778889999999999985 5569976433 11111 1235 999999 99999999
Q ss_pred eCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000054 2290 ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2290 S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
.+|.|++||+.+..... ....|...+..+.+-...++++. .||.|.+||+.. .... .+...|
T Consensus 104 -~~~~l~v~dv~sl~~~~--------~~~~~~~~v~~i~~~~p~~av~~---~dG~L~v~dl~~--~~~~----~~~~~V 165 (388)
T 1xip_A 104 -TRNALYSLDLEELSEFR--------TVTSFEKPVFQLKNVNNTLVILN---SVNDLSALDLRT--KSTK----QLAQNV 165 (388)
T ss_dssp -ESSEEEEEESSSTTCEE--------EEEECSSCEEEEEECSSEEEEEE---TTSEEEEEETTT--CCEE----EEEESE
T ss_pred -cCCcEEEEEchhhhccC--------ccceeecceeeEEecCCCEEEEE---CCCCEEEEEccC--Cccc----cccCCc
Confidence 88999999998654221 12223333443222222366664 899999999975 2222 245689
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCce--eeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKT--KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~--l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
+|++|+|+ | ++.|..||++++|+ ...+.. ..++..+ +.
T Consensus 166 s~v~WSpk-------G--~~vg~~dg~i~~~~---~~~~~~~~k~~I~~P-----p~----------------------- 205 (388)
T 1xip_A 166 TSFDVTNS-------Q--LAVLLKDRSFQSFA---WRNGEMEKQFEFSLP-----SE----------------------- 205 (388)
T ss_dssp EEEEECSS-------E--EEEEETTSCEEEEE---EETTEEEEEEEECCC-----HH-----------------------
T ss_pred eEEEEcCC-------c--eEEEEcCCcEEEEc---CCCccccccceecCC-----cc-----------------------
Confidence 99999999 5 78899999999998 444443 3333100 00
Q ss_pred Ecc--cCCCCCEEEEEEeCCCCEEEEE
Q 000054 2448 YIP--KAHLGSVTRISTVPNTSLFLTG 2472 (2548)
Q Consensus 2448 di~--~gH~~~VtsLafSPdG~~LaSG 2472 (2548)
+. .+|...|.+|.|.+++.++++=
T Consensus 206 -~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 206 -LEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp -HHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred -cccccCCCeeEEEEEEecCCeEEEEE
Confidence 00 1477889999999999988873
No 203
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.47 E-value=3.9e-06 Score=99.79 Aligned_cols=198 Identities=9% Similarity=0.013 Sum_probs=126.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---------
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD--------- 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D--------- 2292 (2548)
+.+++++|+|+++++...++.|.+||..+++.........+ .....+.+++++|+|+.+++.+.+
T Consensus 71 ~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~ 144 (296)
T 3e5z_A 71 QNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEG------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY 144 (296)
T ss_dssp EEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSS
T ss_pred cceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC------CCCCCCCCEEECCCCCEEEECCccccccccccc
Confidence 47889999999888877789999999988875443322111 112457789999999988874311
Q ss_pred ------CcEEEEEcCCCcccccccCccceeccCCccc--EEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc---cee
Q 000054 2293 ------GTVCTWQLEVGGRSNVRPMESCLCFSSHAMD--VSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS---RAS 2361 (2548)
Q Consensus 2293 ------GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~--V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~---v~s 2361 (2548)
+.-.||.+....... ....+... -.+++|+|+.+++. +.++.|.+||+.. .++. ...
T Consensus 145 ~~~~~~~~~~l~~~~~~g~~~--------~~~~~~~~~~gi~~s~dg~~lv~~---~~~~~i~~~~~~~-~g~~~~~~~~ 212 (296)
T 3e5z_A 145 GGEMELPGRWVFRLAPDGTLS--------APIRDRVKPNGLAFLPSGNLLVSD---TGDNATHRYCLNA-RGETEYQGVH 212 (296)
T ss_dssp CCCCCSSSCEEEEECTTSCEE--------EEECCCSSEEEEEECTTSCEEEEE---TTTTEEEEEEECS-SSCEEEEEEE
T ss_pred cccccCCCcEEEEECCCCCEE--------EeecCCCCCccEEECCCCCEEEEe---CCCCeEEEEEECC-CCcCcCCCeE
Confidence 112445444322111 11122222 23589999988444 3788999999862 1332 223
Q ss_pred eeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCC
Q 000054 2362 ITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGD 2441 (2548)
Q Consensus 2362 l~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D 2441 (2548)
+..+.+.+.++++.++ +.+.++. ++.|.+||. . ++.+..+
T Consensus 213 ~~~~~~~p~~i~~d~~-------G~l~v~~--~~~v~~~~~---~-g~~~~~~--------------------------- 252 (296)
T 3e5z_A 213 FTVEPGKTDGLRVDAG-------GLIWASA--GDGVHVLTP---D-GDELGRV--------------------------- 252 (296)
T ss_dssp ECCSSSCCCSEEEBTT-------SCEEEEE--TTEEEEECT---T-SCEEEEE---------------------------
T ss_pred eeCCCCCCCeEEECCC-------CCEEEEc--CCeEEEECC---C-CCEEEEE---------------------------
Confidence 3335566778999888 6666655 889999993 2 5555444
Q ss_pred CCceEEEcccCCCCCEEEEEE-eCCCCEEEEEeCCCcEEEEECCCCcE
Q 000054 2442 QNGMLWYIPKAHLGSVTRIST-VPNTSLFLTGSKDGDVKLWDAKAAQL 2488 (2548)
Q Consensus 2442 ~sv~Iwdi~~gH~~~VtsLaf-SPdG~~LaSGS~DGtIrIWDl~Tgel 2488 (2548)
..+.. +++++| .|+++.|++++.++ +..++..++++
T Consensus 253 ---------~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 253 ---------LTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp ---------ECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred ---------ECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 33455 889999 58999898888764 44556665544
No 204
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.42 E-value=6.3e-05 Score=88.06 Aligned_cols=225 Identities=9% Similarity=0.016 Sum_probs=145.6
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEE
Q 000054 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2271 ~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrI 2348 (2548)
...+.+++++++|+.+++...++.|.+||.. +...... ...+...+. +++++|.++++.. .++.|..
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~-------~~~~~~~~~~i~~~~~g~l~v~~~---~~~~i~~ 82 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYP-------LPTPDAKVMCLTISSDGEVWFTEN---AANKIGR 82 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEE-------CSSTTCCEEEEEECTTSCEEEEET---TTTEEEE
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEec-------CCcccCceeeEEECCCCCEEEeCC---CCCeEEE
Confidence 3679999999999988777778999999987 5322111 111222333 4778998887763 5788999
Q ss_pred EECCCCCCCcceeee--ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2349 WDTLAPPTSSRASIT--CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~--gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
||... + ...+. .....+.++++.++ +.+.++...++.|..||. +++..... ... ......
T Consensus 83 ~~~~g---~-~~~~~~~~~~~~~~~i~~~~~-------g~l~v~~~~~~~i~~~d~----~g~~~~~~-~~~--~~~~~~ 144 (299)
T 2z2n_A 83 ITKKG---I-IKEYTLPNPDSAPYGITEGPN-------GDIWFTEMNGNRIGRITD----DGKIREYE-LPN--KGSYPS 144 (299)
T ss_dssp ECTTS---C-EEEEECSSTTCCEEEEEECTT-------SCEEEEETTTTEEEEECT----TCCEEEEE-CSS--TTCCEE
T ss_pred ECCCC---c-EEEEeCCCcCCCceeeEECCC-------CCEEEEecCCceEEEECC----CCCEEEec-CCC--CCCCCc
Confidence 99752 2 22222 34567899999887 667777777899999993 34433221 111 112334
Q ss_pred ccccCCCCCC-ccC-CCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000054 2427 AHADAQTGSG-SKP-GDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2427 ~vafSpdGk~-v~s-~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
.+++.++|++ ++. .++.+..++. ...+...+.+++++++|.+.++...++.|.+||. +++... +.
T Consensus 145 ~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~--- 219 (299)
T 2z2n_A 145 FITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FK--- 219 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EE---
T ss_pred eEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EE---
Confidence 5677778776 322 2344555543 1123456889999999998887777889999999 776443 21
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe-EE-EEECCCcEEEEECC
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FL-SCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG-La-SGS~DGtIrIWDL~ 2542 (2548)
...+. ..+.+++++++| +. +...++.|..||..
T Consensus 220 ---------~~~~~----~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 220 ---------IPTPN----ARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp ---------CSSTT----CCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred ---------CCCCC----CCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 11121 235678999998 54 44467889999973
No 205
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.42 E-value=1.1e-05 Score=98.48 Aligned_cols=206 Identities=7% Similarity=0.050 Sum_probs=133.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe--CCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA--LDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS--~DGtVrVWD 2299 (2548)
...+++++++..+++...++.|.+||..+++....+..-.. .++......+++ ++..++++. .++.|.++|
T Consensus 86 p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~-----~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD 158 (328)
T 3dsm_A 86 PRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM-----DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKID 158 (328)
T ss_dssp EEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC-----CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEE
T ss_pred CcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc-----cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEE
Confidence 36777878886555555899999999999988777653110 011123455666 345555554 489999999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC----------CeEEEEECCCCCCCcceeeecc-CCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG----------INVVVWDTLAPPTSSRASITCH-EGG 2368 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D----------GtVrIWDl~t~~~k~v~sl~gH-s~~ 2368 (2548)
.++++.....+ ....... ..++++|++++++. .+ +.|.++|..+ .+....+... ...
T Consensus 159 ~~t~~~~~~i~------~g~~p~~-i~~~~dG~l~v~~~---~~~~~~~~~~~~~~v~~id~~t--~~v~~~~~~~~g~~ 226 (328)
T 3dsm_A 159 TETDKVVDELT------IGIQPTS-LVMDKYNKMWTITD---GGYEGSPYGYEAPSLYRIDAET--FTVEKQFKFKLGDW 226 (328)
T ss_dssp TTTTEEEEEEE------CSSCBCC-CEECTTSEEEEEBC---CBCTTCSSCBCCCEEEEEETTT--TEEEEEEECCTTCC
T ss_pred CCCCeEEEEEE------cCCCccc-eEEcCCCCEEEEEC---CCccCCccccCCceEEEEECCC--CeEEEEEecCCCCC
Confidence 99876433211 1111122 24788998777653 33 7899999875 4444444422 246
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEE
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY 2448 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwd 2448 (2548)
...++++|+ +..+.++.. .|.+|| ..+++.....
T Consensus 227 p~~la~~~d-------~~~lyv~~~--~v~~~d---~~t~~~~~~~---------------------------------- 260 (328)
T 3dsm_A 227 PSEVQLNGT-------RDTLYWINN--DIWRMP---VEADRVPVRP---------------------------------- 260 (328)
T ss_dssp CEEEEECTT-------SCEEEEESS--SEEEEE---TTCSSCCSSC----------------------------------
T ss_pred ceeEEEecC-------CCEEEEEcc--EEEEEE---CCCCceeeee----------------------------------
Confidence 899999998 556666544 899999 4444432110
Q ss_pred cccCCCCCEEEEEEeC-CCCEEEEE----eCCCcEEEEECCCCcEEEEec
Q 000054 2449 IPKAHLGSVTRISTVP-NTSLFLTG----SKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2449 i~~gH~~~VtsLafSP-dG~~LaSG----S~DGtIrIWDl~Tgell~tL~ 2493 (2548)
....+......++++| ++.++++. ..++.|.+||.. |+.+.+++
T Consensus 261 ~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 261 FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 0011235678999999 56677776 678999999998 99988874
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.41 E-value=0.00012 Score=85.67 Aligned_cols=232 Identities=9% Similarity=0.048 Sum_probs=149.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++++++|.++++...++.|..+|.. ++. ..+.. + .....+.++++.++|+.+++...++.|..+|..
T Consensus 64 ~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~-~-------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 133 (300)
T 2qc5_A 64 VMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEYPL-P-------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD 133 (300)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEEC-S-------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred ceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEecC-C-------CCCCCCccceECCCCCEEEEccCCCeEEEECCC
Confidence 4778888999988887778899999987 554 33321 1 112568999999999988887778899999987
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-eeeccCCCeEEEEEccCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-sl~gHs~~VtSLafsP~d 2378 (2548)
++..... .......+. ++.++|+++++.. .++.|..+|.. ++... ....+...+..+++.++
T Consensus 134 -g~~~~~~-------~~~~~~~~~~i~~d~~g~l~v~~~---~~~~i~~~~~~---g~~~~~~~~~~~~~~~~i~~d~~- 198 (300)
T 2qc5_A 134 -GTIYEYD-------LPNKGSYPAFITLGSDNALWFTEN---QNNSIGRITNT---GKLEEYPLPTNAAAPVGITSGND- 198 (300)
T ss_dssp -SCEEEEE-------CSSTTCCEEEEEECTTSSEEEEET---TTTEEEEECTT---CCEEEEECSSTTCCEEEEEECTT-
T ss_pred -CCEEEcc-------CCCCCCCceeEEECCCCCEEEEec---CCCeEEEECCC---CcEEEeeCCCCCCCcceEEECCC-
Confidence 4322110 111122222 4788898666652 57889999983 23222 22234457889999887
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT 2458 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt 2458 (2548)
+.+.++....+.|.+||. +++..... ...+...+.
T Consensus 199 ------g~l~v~~~~~~~i~~~~~----~g~~~~~~-----------------------------------~~~~~~~~~ 233 (300)
T 2qc5_A 199 ------GALWFVEIMGNKIGRITT----TGEISEYD-----------------------------------IPTPNARPH 233 (300)
T ss_dssp ------SSEEEEETTTTEEEEECT----TCCEEEEE-----------------------------------CSSTTCCEE
T ss_pred ------CCEEEEccCCCEEEEEcC----CCcEEEEE-----------------------------------CCCCCCCce
Confidence 667777667788999993 23322211 022345678
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEE
Q 000054 2459 RISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVK 2537 (2548)
Q Consensus 2459 sLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIr 2537 (2548)
+++++++|++.++...++.|.+||. +++.. .+. +.... ..+.+++++++| +..++.. .|.
T Consensus 234 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~------------~~~~~----~~~~~i~~~~~g~l~v~~~~-~i~ 294 (300)
T 2qc5_A 234 AITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ------------LQTEN----AEPHGITFGKDGSVWFALKC-KIG 294 (300)
T ss_dssp EEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE------------CCSTT----CCCCCEEECTTSCEEEECSS-EEE
T ss_pred EEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE------------CCccC----CccceeEeCCCCCEEEEccC-ceE
Confidence 9999999998777767899999998 45543 221 01111 123556899999 6655554 666
Q ss_pred EEECC
Q 000054 2538 LIQLE 2542 (2548)
Q Consensus 2538 IWDL~ 2542 (2548)
.++.+
T Consensus 295 ~~~p~ 299 (300)
T 2qc5_A 295 KLNLN 299 (300)
T ss_dssp EEEEC
T ss_pred EeCCC
Confidence 66643
No 207
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.38 E-value=7.3e-06 Score=98.26 Aligned_cols=187 Identities=9% Similarity=0.086 Sum_probs=130.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCc---ccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc
Q 000054 2282 YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHA---MDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2282 dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~---~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~ 2358 (2548)
.++.|++++.|+.|.+||.++|+.+.. +..+. ..-..+.|+|+++++ .++.|..||. + ++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~--------~~~~~~~~~~~~~~~pdG~ilvs-----~~~~V~~~d~-~--G~~ 67 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWE--------YPLEKGWECNSVAATKAGEILFS-----YSKGAKMITR-D--GRE 67 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEE--------EECCTTCCCCEEEECTTSCEEEE-----CBSEEEEECT-T--SCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEE--------eCCCccCCCcCeEECCCCCEEEe-----CCCCEEEECC-C--CCE
Confidence 467899999999999999988875432 22221 112247899999884 4678999998 4 567
Q ss_pred ceeeeccC-CCeEEEEEccCCCCCCCCCCEEEEEeC-CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000054 2359 RASITCHE-GGARSISVFDNDLGSGSVSPLIVTGGK-GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2359 v~sl~gHs-~~VtSLafsP~dlg~gs~g~lLVSGS~-DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
+..+..+. ..+.++.+.++ +.++++.+. ++.|..+| . +|+.+..+.....
T Consensus 68 ~W~~~~~~~~~~~~~~~~~d-------G~~lv~~~~~~~~v~~vd---~-~Gk~l~~~~~~~~----------------- 119 (276)
T 3no2_A 68 LWNIAAPAGCEMQTARILPD-------GNALVAWCGHPSTILEVN---M-KGEVLSKTEFETG----------------- 119 (276)
T ss_dssp EEEEECCTTCEEEEEEECTT-------SCEEEEEESTTEEEEEEC---T-TSCEEEEEEECCS-----------------
T ss_pred EEEEcCCCCccccccEECCC-------CCEEEEecCCCCEEEEEe---C-CCCEEEEEeccCC-----------------
Confidence 77776543 47888888888 788888877 77777777 2 5666655411000
Q ss_pred ccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeec
Q 000054 2437 SKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAG 2516 (2548)
Q Consensus 2437 v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~ 2516 (2548)
..++......+++.++|+++++...++.|..||.. |+.+.++. ... .
T Consensus 120 -------------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~--------------~~~-----~ 166 (276)
T 3no2_A 120 -------------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVK--------------LSG-----T 166 (276)
T ss_dssp -------------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE--------------CSS-----C
T ss_pred -------------CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEE--------------CCC-----C
Confidence 01122234456788999999999999999999998 99998873 111 1
Q ss_pred EEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2517 VTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2517 VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+.++...++| +++++.++.|..+|.++|.
T Consensus 167 ~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 167 PFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp CCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred ccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 2234677888 6677777789999988664
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.35 E-value=1.7e-05 Score=107.38 Aligned_cols=235 Identities=10% Similarity=-0.019 Sum_probs=136.2
Q ss_pred CCCCEEEEEECCCe---EEEEEcC-----CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-----CcE
Q 000054 2229 PLRPFFLVGSSNTH---IYLWEFG-----KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-----GTV 2295 (2548)
Q Consensus 2229 PdG~~LASGS~DGs---VrLWDl~-----tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-----GtV 2295 (2548)
|+|++++....++. -.+|... .++....+.... -...|...+..++|+|||++|+.+..+ .+|
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~----l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i 191 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNT----WAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTV 191 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGG----CC----EEEEEEEECTTSSEEEEEEEETTCSEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHH----hccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEE
Confidence 78888886544332 4556543 333222221100 011122468899999999999887654 369
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCC--------------eEEEEECCCCCCCccee
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI--------------NVVVWDTLAPPTSSRAS 2361 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DG--------------tVrIWDl~t~~~k~v~s 2361 (2548)
++||+.+++.... ........-.+|+|| +.|+.+. .++ .|++|++.++.......
T Consensus 192 ~v~dl~tg~~~~~-------~~~~~~~~~~~wspD-~~l~~~~---~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv 260 (741)
T 1yr2_A 192 KFVGVADGKPLAD-------ELKWVKFSGLAWLGN-DALLYSR---FAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV 260 (741)
T ss_dssp EEEETTTCCEEEE-------EEEEEESCCCEESTT-SEEEEEE---CCCC--------CCCCCEEEEEETTSCGGGCEEE
T ss_pred EEEECCCCCCCCc-------cCCCceeccEEEECC-CEEEEEE---ecCcccccccccCCCCCEEEEEECCCCchhCEEE
Confidence 9999998864321 011110011258999 8888775 333 48999987532212223
Q ss_pred ee--ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC-----cEEEEeCCccccC--ceeeeecCCCCCCCccccccccCC
Q 000054 2362 IT--CHEGGARSISVFDNDLGSGSVSPLIVTGGKGG-----DVGIHDFRYIATG--KTKKHKHSDRGGSSINTCAHADAQ 2432 (2548)
Q Consensus 2362 l~--gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG-----tVrLWDLR~l~TG--k~l~tl~~~~~~s~~~~~~vafSp 2432 (2548)
+. .|...+.++.|+|+ |++|+..+.++ .|.+||+ .++ ++...+
T Consensus 261 ~~~~~~~~~~~~~~~SpD-------G~~l~~~~~~~~~~~~~l~~~d~---~~~~~~~~~~l------------------ 312 (741)
T 1yr2_A 261 FATPELPKRGHGASVSSD-------GRWVVITSSEGTDPVNTVHVARV---TNGKIGPVTAL------------------ 312 (741)
T ss_dssp ECCTTCTTCEEEEEECTT-------SCEEEEEEECTTCSCCEEEEEEE---ETTEECCCEEE------------------
T ss_pred eccCCCCeEEEEEEECCC-------CCEEEEEEEccCCCcceEEEEEC---CCCCCcccEEe------------------
Confidence 32 33346889999998 77777776544 8999994 333 212222
Q ss_pred CCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEECCCCc-EEEEecccccccccccCccc
Q 000054 2433 TGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD----GDVKLWDAKAAQ-LVYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2433 dGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D----GtIrIWDl~Tge-ll~tL~~~Hs~hsfl~~tl~ 2507 (2548)
..+...+... ++|+|+.|+..+.+ +.|.+||+.++. ....+ +.
T Consensus 313 ------------------~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l-------------~~ 360 (741)
T 1yr2_A 313 ------------------IPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV-------------VP 360 (741)
T ss_dssp ------------------ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEE-------------EC
T ss_pred ------------------cCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEE-------------ec
Confidence 1223333344 34888888877763 459999998752 33333 12
Q ss_pred CCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECC
Q 000054 2508 GFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~ 2542 (2548)
++... +.+++++.+. +++...||..++|.++
T Consensus 361 ~~~~~----l~~~~~~~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 361 ESKDN----LESVGIAGNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp CCSSE----EEEEEEEBTEEEEEEEETTEEEEEEEE
T ss_pred CCCCe----EEEEEEECCEEEEEEEECCEEEEEEEe
Confidence 23322 3455777444 6788889988777654
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.34 E-value=9.1e-06 Score=102.43 Aligned_cols=178 Identities=16% Similarity=0.131 Sum_probs=122.6
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccc---ccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNV---RPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i---~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
..++.+++++...++++|+.|+.+ +|++........ ....... ...+.. |.. | +++.++++ .++.|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~-v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~~~L~v~----~~~~l 108 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAV-VGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HGDQVLVS----TRNAL 108 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEE-EEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ETTEEEEE----ESSEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEE-EEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CCCEEEEE----cCCcE
Confidence 468999999999999999998555 599764321000 0011111 112333 553 5 88999987 57999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
++||++. .........|...+.++.+.+. .+++++.||.|.+||+. ++....
T Consensus 109 ~v~dv~s--l~~~~~~~~~~~~v~~i~~~~p---------~~av~~~dG~L~v~dl~---~~~~~~-------------- 160 (388)
T 1xip_A 109 YSLDLEE--LSEFRTVTSFEKPVFQLKNVNN---------TLVILNSVNDLSALDLR---TKSTKQ-------------- 160 (388)
T ss_dssp EEEESSS--TTCEEEEEECSSCEEEEEECSS---------EEEEEETTSEEEEEETT---TCCEEE--------------
T ss_pred EEEEchh--hhccCccceeecceeeEEecCC---------CEEEEECCCCEEEEEcc---CCcccc--------------
Confidence 9999986 3344456677888988887655 48889999999999953 333321
Q ss_pred ccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcE--EEEecccccccccccC
Q 000054 2427 AHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQL--VYHWSKLHERHTFLQP 2504 (2548)
Q Consensus 2427 ~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgel--l~tL~~~Hs~hsfl~~ 2504 (2548)
+...|+|++|+|+| ++.|..||++++|+...++. ..+++.. .
T Consensus 161 --------------------------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~P----p---- 204 (388)
T 1xip_A 161 --------------------------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLP----S---- 204 (388)
T ss_dssp --------------------------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCC----H----
T ss_pred --------------------------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCC----c----
Confidence 33589999999999 67899999999999887775 5566311 1
Q ss_pred ccc---CCCCceeecEEEEEEcCCe
Q 000054 2505 SSR---GFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2505 tl~---GH~~~V~a~VtsLafSPdG 2526 (2548)
.+. +|. ..|.+|.|.+++
T Consensus 205 ~~~~~~~~~----~~V~sI~wl~~~ 225 (388)
T 1xip_A 205 ELEELPVEE----YSPLSVTILSPQ 225 (388)
T ss_dssp HHHTSCTTT----SEEEEEEESSSS
T ss_pred ccccccCCC----eeEEEEEEecCC
Confidence 011 243 336788999988
No 210
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.32 E-value=0.00012 Score=89.10 Aligned_cols=230 Identities=10% Similarity=0.031 Sum_probs=138.2
Q ss_pred EEEEEcCCC-CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2223 RAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2223 ~~VsfSPdG-~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
.+..|+|++ .+++++..++.|..||..+++.. .+.. ...+.+++|+++|+++++. .+ .|.+||..
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-----------~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~ 117 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-----------PFMGSALAKISDSKQLIAS-DD-GLFLRDTA 117 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-----------SSCEEEEEEEETTEEEEEE-TT-EEEEEETT
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-----------CCcceEEEEeCCCeEEEEE-CC-CEEEEECC
Confidence 567888975 45667777899999999877543 2221 1569999999999877654 44 48899988
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEecc-C--CCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHS-S--NGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~S-S--~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
+++........ .......+. .++++|+++++.... . ..+.|..+| . ++. ..+..+......++|+|
T Consensus 118 ~g~~~~~~~~~----~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~--g~~-~~~~~~~~~~~~i~~s~ 188 (326)
T 2ghs_A 118 TGVLTLHAELE----SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K--GKV-TKLFADISIPNSICFSP 188 (326)
T ss_dssp TCCEEEEECSS----TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T--TEE-EEEEEEESSEEEEEECT
T ss_pred CCcEEEEeeCC----CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C--CcE-EEeeCCCcccCCeEEcC
Confidence 77532211100 001112333 478999977654200 0 124555555 2 332 22333345678899999
Q ss_pred CCCCCCCCCCEE-EEEeCCCcEEEEeCCccccC-ceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2377 NDLGSGSVSPLI-VTGGKGGDVGIHDFRYIATG-KTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2377 ~dlg~gs~g~lL-VSGS~DGtVrLWDLR~l~TG-k~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
+ ++.+ ++.+.++.|.+||+. ..++ .... .+++..+....
T Consensus 189 d-------g~~lyv~~~~~~~I~~~d~~-~~~Gl~~~~-------------------------------~~~~~~~~~~~ 229 (326)
T 2ghs_A 189 D-------GTTGYFVDTKVNRLMRVPLD-ARTGLPTGK-------------------------------AEVFIDSTGIK 229 (326)
T ss_dssp T-------SCEEEEEETTTCEEEEEEBC-TTTCCBSSC-------------------------------CEEEEECTTSS
T ss_pred C-------CCEEEEEECCCCEEEEEEcc-cccCCcccC-------------------------------ceEEEECCCCC
Confidence 8 5544 555667899999953 0123 1100 01111112233
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEc-CCe--E-EEE
Q 000054 2455 GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVV-SRG--F-LSC 2530 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafS-PdG--L-aSG 2530 (2548)
.....++++++|.+.++...++.|.+||. +++.+..+. .+. ..+++++|+ |++ | ++.
T Consensus 230 ~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~--------------~~~----~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 230 GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE--------------VPG----KQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE--------------CSC----SBEEEEEEESTTSCEEEEEE
T ss_pred CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE--------------CCC----CCcEEEEEecCCCCEEEEEe
Confidence 45678999999998888777889999998 677776552 111 135778998 876 4 444
Q ss_pred ECC
Q 000054 2531 GGD 2533 (2548)
Q Consensus 2531 S~D 2533 (2548)
..+
T Consensus 291 ~~~ 293 (326)
T 2ghs_A 291 ARE 293 (326)
T ss_dssp BCT
T ss_pred cCC
Confidence 444
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.30 E-value=4.4e-05 Score=90.60 Aligned_cols=199 Identities=12% Similarity=0.147 Sum_probs=125.2
Q ss_pred EEEEEEcCC-CCEEEEEECCCeEEEEEcCCCceeEE-EeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-------
Q 000054 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATAT-YGVLPAANVPPPYALASISALQFDHYGHRFASAALD------- 2292 (2548)
Q Consensus 2222 V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg~~l~t-~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D------- 2292 (2548)
+.++.++++ |+++++.. ++.|.+||.. ++.... ... . .......+.+++++++|+.+++...+
T Consensus 73 ~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~-~-----~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 144 (314)
T 1pjx_A 73 PAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKD-S-----EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY 144 (314)
T ss_dssp EEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBC-T-----TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC
T ss_pred CceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEecc-C-----CCccccCCcCEEECCCCCEEEEecCcccccccc
Confidence 478888999 76555544 4478999988 654322 111 0 01122468899999999988777655
Q ss_pred --------CcEEEEEcCCCcccccccCccceeccCCcccEEEEc----CCCCEEEEEeccCCCCeEEEEECCCCCCC---
Q 000054 2293 --------GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYIT----SSGSVIAAAGHSSNGINVVVWDTLAPPTS--- 2357 (2548)
Q Consensus 2293 --------GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afS----pdGslLATgG~SS~DGtVrIWDl~t~~~k--- 2357 (2548)
+.|..|+.. ++.... ......... .+++ ++++.+..+. +.++.|.+||... .++
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~~~~~------~~~~~~~~~-i~~~~~~d~dg~~l~v~~--~~~~~i~~~~~~~-~g~~~~ 213 (314)
T 1pjx_A 145 TRSMQEKFGSIYCFTTD-GQMIQV------DTAFQFPNG-IAVRHMNDGRPYQLIVAE--TPTKKLWSYDIKG-PAKIEN 213 (314)
T ss_dssp CBTTSSSCEEEEEECTT-SCEEEE------EEEESSEEE-EEEEECTTSCEEEEEEEE--TTTTEEEEEEEEE-TTEEEE
T ss_pred cccccCCCCeEEEECCC-CCEEEe------ccCCCCcce-EEEecccCCCCCEEEEEE--CCCCeEEEEECCC-CCcccc
Confidence 456666554 321111 000111112 2467 8887666554 3678999999752 122
Q ss_pred --cceeeeccC-CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCC
Q 000054 2358 --SRASITCHE-GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTG 2434 (2548)
Q Consensus 2358 --~v~sl~gHs-~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdG 2434 (2548)
....+..+. ..+..+++.++ +.+.++...++.|.+|| ..+++.+..+
T Consensus 214 ~~~~~~~~~~~~~~p~~i~~d~~-------G~l~v~~~~~~~i~~~d---~~~g~~~~~~-------------------- 263 (314)
T 1pjx_A 214 KKVWGHIPGTHEGGADGMDFDED-------NNLLVANWGSSHIEVFG---PDGGQPKMRI-------------------- 263 (314)
T ss_dssp EEEEEECCCCSSCEEEEEEEBTT-------CCEEEEEETTTEEEEEC---TTCBSCSEEE--------------------
T ss_pred ceEEEECCCCCCCCCCceEECCC-------CCEEEEEcCCCEEEEEc---CCCCcEeEEE--------------------
Confidence 222333443 56888999887 67888887889999999 4444443333
Q ss_pred CCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCC
Q 000054 2435 SGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLF-LTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2435 k~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~L-aSGS~DGtIrIWDl~T 2485 (2548)
..+...+.+++|+|+++.| ++...++.|..|++..
T Consensus 264 ----------------~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 264 ----------------RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ----------------ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ----------------eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 2344678999999999954 5555678999999874
No 212
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.27 E-value=2.4e-05 Score=98.02 Aligned_cols=257 Identities=11% Similarity=-0.025 Sum_probs=151.5
Q ss_pred EEEEEECCC----eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe----------CCCcEEEE
Q 000054 2233 FFLVGSSNT----HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------LDGTVCTW 2298 (2548)
Q Consensus 2233 ~LASGS~DG----sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS----------~DGtVrVW 2298 (2548)
.+++-..++ +|.+.|..+++.+.++..- ..+ .+.++||+++++++. .+++|.+|
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG----------~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~Vsvi 101 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGA----------FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVF 101 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEEC----------TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCC----------CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 344444444 8889999999999887541 133 799999999999886 37899999
Q ss_pred EcCCCcccccccCc-cceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEE--EECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2299 QLEVGGRSNVRPME-SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVV--WDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~-s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrI--WDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
|..+++.....+.. ......+....-..++|||++++++... .+..|.+ +|+.+ +..+.. ... +...
T Consensus 102 D~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~-~~~~v~V~~iD~~t-----v~~i~v--~~~--~~~~ 171 (368)
T 1mda_H 102 DPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG-SSAAAGLSVPGASD-----DQLTKS--ASC--FHIH 171 (368)
T ss_dssp CTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS-SSCEEEEEETTTEE-----EEEEEC--SSC--CCCE
T ss_pred ECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccC-CCCeEEEEEEchhh-----ceEEEC--CCc--eEEc
Confidence 99988654322110 0000011222334689999988887421 2467888 88853 333321 111 1123
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCcccc-----Cceeeeec-CCCCCCCccccccccCCCC-CC-ccCCCCCceEE
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIAT-----GKTKKHKH-SDRGGSSINTCAHADAQTG-SG-SKPGDQNGMLW 2447 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~T-----Gk~l~tl~-~~~~~s~~~~~~vafSpdG-k~-v~s~D~sv~Iw 2447 (2548)
|+. ...+++.+.||.+.+.|+ .+ ++...... .......+. + .+++ .+ .... +.+.+.
T Consensus 172 p~g------~~~~~~~~~dg~~~~vd~---~~~~~~~~~v~~~~t~~i~vg~~P~----~-~~~~~~~~~vs~-~~V~vi 236 (368)
T 1mda_H 172 PGA------AATHYLGSCPASLAASDL---AAAPAAAGIVGAQCTGAQNCSSQAA----Q-ANYPGMLVWAVA-SSILQG 236 (368)
T ss_dssp EEE------TTEEECCCCTTSCEEEEC---CSSCCCCEECCCCSCTTSCBCSCCE----E-ETTTTEEEECBS-SCCEEE
T ss_pred cCC------CeEEEEEcCCCCEEEEEC---ccccccCCeEEEEeeeeeeCCCCcc----c-cccCCEEEEEcC-CEEEEE
Confidence 442 346667778888888884 33 22211100 000001111 2 2332 22 2223 556555
Q ss_pred EcccCC--------------------CCCEEEEEEeCCCCEEEEEeC---------CCcEEEEECCCCcEEEEecccccc
Q 000054 2448 YIPKAH--------------------LGSVTRISTVPNTSLFLTGSK---------DGDVKLWDAKAAQLVYHWSKLHER 2498 (2548)
Q Consensus 2448 di~~gH--------------------~~~VtsLafSPdG~~LaSGS~---------DGtIrIWDl~Tgell~tL~~~Hs~ 2498 (2548)
|..... ......++++|+++.++.+.. ++.+.++|+.+++.+.+++
T Consensus 237 D~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~----- 311 (368)
T 1mda_H 237 DIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----- 311 (368)
T ss_dssp ECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-----
T ss_pred ECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE-----
Confidence 542110 011112789999988876543 2356699999999998773
Q ss_pred cccccCcccCCCCceeecEEEEEEcCCe---EEEEE-CCCcEEEEECCCCc
Q 000054 2499 HTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCG-GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2499 hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS-~DGtIrIWDL~sg~ 2545 (2548)
-| .....++++||| +++.. .+++|.++|+.++.
T Consensus 312 --------vg------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 312 --------NG------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp --------EE------EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred --------CC------CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 11 124677999998 66777 69999999998864
No 213
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.24 E-value=0.00015 Score=90.81 Aligned_cols=79 Identities=8% Similarity=-0.155 Sum_probs=57.8
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC--
Q 000054 2224 AFSSHPLRPFFLVGS----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-- 2291 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS----------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-- 2291 (2548)
.+.++|||+++.++. .++.|.+||..+.+.+..+...... + ..+...-..++|+|||++|+++..
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~--~-~~~g~~p~~~~~spDG~~l~v~n~~~ 146 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP--R-FDVGPYSWMNANTPNNADLLFFQFAA 146 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcc--c-cccCCCccceEECCCCCEEEEEecCC
Confidence 678889999988875 3678999999998888776532000 0 001123458999999999999874
Q ss_pred CCcEEEEEcCCCccc
Q 000054 2292 DGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i 2306 (2548)
+++|.++| .+++..
T Consensus 147 ~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 147 GPAVGLVV-QGGSSD 160 (373)
T ss_pred CCeEEEEE-CCCCEE
Confidence 47899999 887644
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.23 E-value=7.3e-05 Score=91.70 Aligned_cols=249 Identities=8% Similarity=0.034 Sum_probs=138.5
Q ss_pred EEEEEEcCCCCEEEEEE--CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-----CCc
Q 000054 2222 TRAFSSHPLRPFFLVGS--SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-----DGT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS--~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-----DGt 2294 (2548)
...++++|+|+++++.. .++.++||.+.+++ +..+ +........|...+..|+++++++.+++-.. ++.
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~---p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPF---PPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEES---CCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred cceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecC---CCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 57888999999998864 23436677766553 3332 1110012245678999999999886665443 579
Q ss_pred EEEEEcCCCcccccccCccc-eeccCCcccEEEEcCCCCEEEEEeccC---CCCeEEEEECCCCCCCcceeeecc-----
Q 000054 2295 VCTWQLEVGGRSNVRPMESC-LCFSSHAMDVSYITSSGSVIAAAGHSS---NGINVVVWDTLAPPTSSRASITCH----- 2365 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~-~t~~gH~~~V~afSpdGslLATgG~SS---~DGtVrIWDl~t~~~k~v~sl~gH----- 2365 (2548)
|.+||+.+++.......... .....+...+ .+++++..++.+. + .++.|.+||+.. ++....+.+|
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v-~vd~~~g~~yvtd--~~~~~~~~i~v~d~~~--g~~~r~~~~~~~~~~ 169 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDL-AVDLIHNFVYISD--PAPDDKAALIRVDLQT--GLAARVLQGYPGIAP 169 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEE-EEETTTTEEEEEE--CCSGGGCEEEEEETTT--CCEEEECTTCTTTSC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceE-EEecCCCEEEEEc--CccCCCCeEEEEECCC--CCEEEEecCCCcccc
Confidence 99999988763322111000 0001112233 3666554554443 2 467899999864 3333322221
Q ss_pred ------------------------CCCeEEEEEccCCCCCCCCCCEEEEEeCCC-cEEEEeCCccccCceeeeecCCCCC
Q 000054 2366 ------------------------EGGARSISVFDNDLGSGSVSPLIVTGGKGG-DVGIHDFRYIATGKTKKHKHSDRGG 2420 (2548)
Q Consensus 2366 ------------------------s~~VtSLafsP~dlg~gs~g~lLVSGS~DG-tVrLWDLR~l~TGk~l~tl~~~~~~ 2420 (2548)
...+..++++|+ +..|..+..++ .|..+|...+..+.. ..
T Consensus 170 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~d-------g~~ly~~~~~~~~l~~~~~~~~~~~~~-~~------- 234 (343)
T 2qe8_A 170 EDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAE-------NEWLYLSPMHSTSMYRIKSADLSNLQL-TD------- 234 (343)
T ss_dssp CSCCCEETTEECBEECTTSCEECCCCCEEEEEECTT-------SCEEEEEESSCSEEEEEEHHHHTCTTC-CH-------
T ss_pred cccceeECCEEEEeccCCCceeceecccceeEeccC-------CCEEEEEeCCCCeEEEEEHHHhcCCCC-Ch-------
Confidence 124677888887 66666666555 444443211000000 00
Q ss_pred CCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccc
Q 000054 2421 SSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHT 2500 (2548)
Q Consensus 2421 s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hs 2500 (2548)
++.. ..+.. .++.+....++++++|.++++...++.|.+||..+|+......
T Consensus 235 -------------~~~~----~~~~~----~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~------- 286 (343)
T 2qe8_A 235 -------------AELG----SKIER----YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT------- 286 (343)
T ss_dssp -------------HHHH----TTCEE----EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-------
T ss_pred -------------hhhh----cceEe----cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-------
Confidence 0000 00000 1233455678999999999999999999999986676432220
Q ss_pred cccCcccCCCCceeecEEEEEEcCCe--EEEEEC
Q 000054 2501 FLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG 2532 (2548)
Q Consensus 2501 fl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~ 2532 (2548)
.. . ...+.+++++++| +++.+.
T Consensus 287 -------~~--~-~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 287 -------DE--K-LSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp -------CG--G-GSCEEEEEECTTSCEEEEECC
T ss_pred -------CC--c-eecCCeeEECCCCcEEEEeCc
Confidence 00 0 0235778999988 445543
No 215
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.19 E-value=6e-07 Score=111.91 Aligned_cols=189 Identities=11% Similarity=0.041 Sum_probs=99.5
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000054 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
++..+++|+.||.|+.||..+|+.+-.+.. +.+.+..+..++..+++++.||.|..||.++|+.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL 75 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC------------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee
Confidence 567899999999999999999998887753 12333334456777888899999999999888643221
Q ss_pred cCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE
Q 000054 2310 PMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV 2389 (2548)
Q Consensus 2310 p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV 2389 (2548)
+....... ....+ +. ++..+++++ .|+.|+.||..+ ++.+..+..+. ...++|. +..++
T Consensus 76 ~~~~~~~~--~~sp~--~~-~~~~v~~g~---~dg~v~a~D~~t--G~~~w~~~~~~----~~~~~p~-------~~~v~ 134 (369)
T 2hz6_A 76 PFTIPELV--QASPC--RS-SDGILYMGK---KQDIWYVIDLLT--GEKQQTLSSAF----ADSLSPS-------TSLLY 134 (369)
T ss_dssp SCCHHHHH--TTCSC--C------CCCCE---EEEEEEEECCC-----------------------------------EE
T ss_pred eccCcccc--ccCce--Ee-cCCEEEEEe---CCCEEEEEECCC--CcEEEEecCCC----ccccccc-------CCEEE
Confidence 11100000 00111 11 334555553 689999999986 55555554433 1233444 56888
Q ss_pred EEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC---C
Q 000054 2390 TGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN---T 2466 (2548)
Q Consensus 2390 SGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd---G 2466 (2548)
+++.||.|+.|| ..+|+.+..+... . ....+++++ .
T Consensus 135 ~~~~dg~v~a~d---~~tG~~~W~~~~~----------------------------------~----~~~~~~~~~~~~~ 173 (369)
T 2hz6_A 135 LGRTEYTITMYD---TKTRELRWNATYF----------------------------------D----YAASLPEDDVDYK 173 (369)
T ss_dssp EEEEEEEEECCC---SSSSSCCCEEEEE----------------------------------E----ECCBCCCCCTTCC
T ss_pred EEecCCEEEEEE---CCCCCEEEeEecc----------------------------------c----ccCccccCCcccc
Confidence 999999999999 5566654443100 0 001112221 1
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2467 SLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2467 ~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
..+++++.||.|+.||.++|+.+.++
T Consensus 174 ~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 174 MSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp CCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred ceEEEECCCCEEEEEECCCCcEEEEe
Confidence 44566788999999999999887765
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.16 E-value=0.00019 Score=86.26 Aligned_cols=232 Identities=9% Similarity=0.039 Sum_probs=137.0
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
.....|+|+|+ +++++..++.|..|+. +++ ...+.. +...+..++++++|+.+++...++.|.+|+.
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~----------~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLD----------ATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEE----------SCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeC----------CCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 46788999998 6667788899999997 444 333332 1256899999999997666666688999998
Q ss_pred CCCcccccccCccceeccCCcccEEEEcCCCCEEEE----Eecc----------CCCCeEEEEECCCCCCCcceeeeccC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAA----AGHS----------SNGINVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLAT----gG~S----------S~DGtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
+ ++............+ ..... ..++++|+++++ +... ...+.|..+|..+ ++.. .+. ..
T Consensus 115 ~-g~~~~~~~~~~~~~~-~~~~~-i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~--g~~~-~~~-~~ 187 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRL-NSPND-LIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG--SPLQ-RMA-DL 187 (305)
T ss_dssp T-SCEEEEECEETTEEC-SCCCC-EEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS--CCCE-EEE-EE
T ss_pred C-CCEEEEEeccCCCcc-CCCCC-EEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC--CcEE-EEe-cC
Confidence 6 432111100000000 01112 247889998886 2100 0125677777654 2322 222 44
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCC------CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCC
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVTGGKG------GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPG 2440 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~D------GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~ 2440 (2548)
...+.++|+|+ +..|..+..+ +.|.+||+. .+. +...
T Consensus 188 ~~p~gl~~spd-------g~~lyv~~~~~~~~~~~~i~~~~~~---~~~-l~~~-------------------------- 230 (305)
T 3dr2_A 188 DHPNGLAFSPD-------EQTLYVSQTPEQGHGSVEITAFAWR---DGA-LHDR-------------------------- 230 (305)
T ss_dssp SSEEEEEECTT-------SSEEEEEECCC---CCCEEEEEEEE---TTE-EEEE--------------------------
T ss_pred CCCcceEEcCC-------CCEEEEEecCCcCCCCCEEEEEEec---CCC-ccCC--------------------------
Confidence 56788999998 6666666554 789999943 222 1111
Q ss_pred CCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEE
Q 000054 2441 DQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDI 2520 (2548)
Q Consensus 2441 D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsL 2520 (2548)
+++. ....+....++++++|++.++. .+| |.+||. +++.+..+. .+. .+.++
T Consensus 231 ----~~~~--~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~-~g~~~~~~~--------------~~~-----~~~~~ 282 (305)
T 3dr2_A 231 ----RHFA--SVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDS-DGQLLGHIP--------------TPG-----TASNC 282 (305)
T ss_dssp ----EEEE--CCSSSCCCSEEECTTSCEEECC-SSE-EEEECT-TSCEEEEEE--------------CSS-----CCCEE
T ss_pred ----eEEE--ECCCCCCCeEEECCCCCEEEec-CCc-EEEECC-CCCEEEEEE--------------CCC-----ceeEE
Confidence 0000 1112334568899999965544 454 999998 577776662 111 14566
Q ss_pred EEcCCe--EEEEECCCcEE
Q 000054 2521 QVVSRG--FLSCGGDGSVK 2537 (2548)
Q Consensus 2521 afSPdG--LaSGS~DGtIr 2537 (2548)
+|+|++ |..++.++..+
T Consensus 283 ~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 283 TFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EECTTSCEEEEEETTEEEE
T ss_pred EEeCCCCEEEEEcCCeEEE
Confidence 898887 66666654333
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.15 E-value=0.0002 Score=85.80 Aligned_cols=191 Identities=13% Similarity=0.008 Sum_probs=121.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---------
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD--------- 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D--------- 2292 (2548)
+.+++++|+|+++++ . ++.|.+||..+++.......... .....+.+++++|+|+++++...+
T Consensus 56 ~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 56 VSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDND------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp EEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTT------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCT
T ss_pred eEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCC------CCCCCCCCEEECCCCCEEEecCCcccccccccC
Confidence 578889999996554 3 56899999988765433221111 112458999999999977655332
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc-----ceeeeccCC
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS-----RASITCHEG 2367 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~-----v~sl~gHs~ 2367 (2548)
+.-.+|.+......... .... ....-.+++|+++.++.+. +.++.|.+||+....+.. ...+..+.+
T Consensus 128 ~~~~l~~~d~~g~~~~~-----~~~~-~~pngi~~spdg~~lyv~~--~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~ 199 (297)
T 3g4e_A 128 HQGALYSLFPDHHVKKY-----FDQV-DISNGLDWSLDHKIFYYID--SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ 199 (297)
T ss_dssp TCEEEEEECTTSCEEEE-----EEEE-SBEEEEEECTTSCEEEEEE--GGGTEEEEEEECTTTCCEEEEEEEEECCGGGC
T ss_pred CCcEEEEEECCCCEEEE-----eecc-ccccceEEcCCCCEEEEec--CCCCcEEEEeccCCCCcccCcEEEEECCCCCC
Confidence 34566766543211110 0000 1111235899999777665 367899999974222322 222333456
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
....+++.++ +.+.++...++.|..|| ..+++.+..+
T Consensus 200 ~p~g~~~d~~-------G~lwva~~~~~~v~~~d---~~tG~~~~~i--------------------------------- 236 (297)
T 3g4e_A 200 IPDGMCIDAE-------GKLWVACYNGGRVIRLD---PVTGKRLQTV--------------------------------- 236 (297)
T ss_dssp EEEEEEEBTT-------SCEEEEEETTTEEEEEC---TTTCCEEEEE---------------------------------
T ss_pred CCCeeEECCC-------CCEEEEEcCCCEEEEEc---CCCceEEEEE---------------------------------
Confidence 7888999887 67888887888999999 5667776665
Q ss_pred EcccCCCCCEEEEEEe-CCCCEEEEEeC
Q 000054 2448 YIPKAHLGSVTRISTV-PNTSLFLTGSK 2474 (2548)
Q Consensus 2448 di~~gH~~~VtsLafS-PdG~~LaSGS~ 2474 (2548)
..+...+++++|. |+++.|+.++.
T Consensus 237 ---~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 237 ---KLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ---ECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ---ECCCCCceEEEEeCCCCCEEEEEcC
Confidence 3355678999998 88876665554
No 218
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.06 E-value=0.00032 Score=88.36 Aligned_cols=203 Identities=12% Similarity=0.060 Sum_probs=129.9
Q ss_pred EEEEEcCCCCEEEEEEC--CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2223 RAFSSHPLRPFFLVGSS--NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~--DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
..+.++|||+++.++.. ++.|.++|..+++.+.++.. ... ...+....+.+++.+.||.+.+.++
T Consensus 140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v------------~g~-~~~~P~g~~~~~~~~~DG~~~~v~~ 206 (386)
T 3sjl_D 140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV------------PDC-YHIFPTAPDTFFMHCRDGSLAKVAF 206 (386)
T ss_dssp GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC------------CSE-EEEEEEETTEEEEEETTSCEEEEEC
T ss_pred ceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC------------CCc-ceeecCCCceeEEECCCCCEEEEEC
Confidence 34678899999888764 68999999999999888743 111 1223334567888889999999998
Q ss_pred CC-CcccccccCccceeccCCcccEE---EE-cCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee----------cc
Q 000054 2301 EV-GGRSNVRPMESCLCFSSHAMDVS---YI-TSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT----------CH 2365 (2548)
Q Consensus 2301 ~t-gk~i~i~p~~s~~t~~gH~~~V~---af-SpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~----------gH 2365 (2548)
.+ ++..... . ..+..-...+. .| .++|++++.. .+|.|.+.|......+....+. -.
T Consensus 207 ~~~g~v~~~~---~-~~~~~~~~~~~~~~~~~~~dG~~~~vs----~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 207 GTEGTPEITH---T-EVFHPEDEFLINHPAYSQKAGRLVWPT----YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp CSSSCCEEEE---C-CCCSCTTSCBCSCCEEETTTTEEEEEB----TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred CCCCeEEEee---c-ceeccccccccccceeEcCCCcEEEEe----CCCEEEEEECCCCcceeecceecccccccccccc
Confidence 76 4321100 0 01111111111 23 4678766553 6899999999753222222221 01
Q ss_pred CCCeEEEEEccCCCCCCCCCCEEEEEeC----------CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCC
Q 000054 2366 EGGARSISVFDNDLGSGSVSPLIVTGGK----------GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGS 2435 (2548)
Q Consensus 2366 s~~VtSLafsP~dlg~gs~g~lLVSGS~----------DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk 2435 (2548)
.++...+.++++ +..+..... .+.|.+.| ..+++.+..+.
T Consensus 279 p~g~q~~a~~~~-------~~~lyV~~~~~~~~~hk~~~~~V~viD---~~t~kv~~~i~-------------------- 328 (386)
T 3sjl_D 279 PGGWQQVAYHRA-------LDRIYLLVDQRDEWRHKTASRFVVVLD---AKTGERLAKFE-------------------- 328 (386)
T ss_dssp ECSSSCEEEETT-------TTEEEEEEEECCTTCTTSCEEEEEEEE---TTTCCEEEEEE--------------------
T ss_pred CCCcceeeECCC-------CCeEEEEeccccccccCCCCCEEEEEE---CCCCeEEEEEE--------------------
Confidence 234445677777 344444321 25788999 66777777651
Q ss_pred CccCCCCCceEEEcccCCCCCEEEEEEeCCCC-EEEEE-eCCCcEEEEECCCCcEEEEec
Q 000054 2436 GSKPGDQNGMLWYIPKAHLGSVTRISTVPNTS-LFLTG-SKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2436 ~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~-~LaSG-S~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.+ ..+.+|+++|+++ +|+++ ..+++|.|+|..+++.+.+++
T Consensus 329 ---------------vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 329 ---------------MG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp ---------------EE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred ---------------CC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence 11 2577999999996 66665 458999999999999999884
No 219
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.00 E-value=0.0017 Score=79.97 Aligned_cols=269 Identities=10% Similarity=0.058 Sum_probs=148.5
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p 2310 (2548)
+..+.+++.++.|..+|..+|+.+-.+............ ...+.+. ...++..++.++.||.|..+|.++|+..-...
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKE-PALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCC-CCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCcccccccccc-CcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 567788888999999999999987666432110000000 1222221 12246678889999999999999886432211
Q ss_pred CccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe-----EEEEEccCCCCCCCCC
Q 000054 2311 MESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA-----RSISVFDNDLGSGSVS 2385 (2548)
Q Consensus 2311 ~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V-----tSLafsP~dlg~gs~g 2385 (2548)
... ......+ +. + ..+++++ .++.|..+|..+ ++.+.......... ...... +
T Consensus 131 ~~~----~~~~~p~--~~-~-~~v~v~~---~~g~l~~~d~~t--G~~~W~~~~~~~~~~~~~~~~~~~~---------~ 188 (376)
T 3q7m_A 131 VAG----EALSRPV--VS-D-GLVLIHT---SNGQLQALNEAD--GAVKWTVNLDMPSLSLRGESAPTTA---------F 188 (376)
T ss_dssp CSS----CCCSCCE--EE-T-TEEEEEC---TTSEEEEEETTT--CCEEEEEECCC-----CCCCCCEEE---------T
T ss_pred CCC----ceEcCCE--EE-C-CEEEEEc---CCCeEEEEECCC--CcEEEEEeCCCCceeecCCCCcEEE---------C
Confidence 100 0011111 11 3 3555553 789999999876 45444443221110 111111 2
Q ss_pred CEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCc-------cccccccCCCCCC-ccCCCCCceEEEcccCC----
Q 000054 2386 PLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSI-------NTCAHADAQTGSG-SKPGDQNGMLWYIPKAH---- 2453 (2548)
Q Consensus 2386 ~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~-------~~~~vafSpdGk~-v~s~D~sv~Iwdi~~gH---- 2453 (2548)
..++.++.+|.|..+| ..+|+.+............ ....... .++.. ++..++.+..++...+.
T Consensus 189 ~~v~~g~~~g~l~~~d---~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~~g~l~~~d~~tG~~~w~ 264 (376)
T 3q7m_A 189 GAAVVGGDNGRVSAVL---MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAYNGNLTALDLRSGQIMWK 264 (376)
T ss_dssp TEEEECCTTTEEEEEE---TTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEECTTSCEEEEETTTCCEEEE
T ss_pred CEEEEEcCCCEEEEEE---CCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEecCcEEEEEECCCCcEEee
Confidence 3788888899999999 6678776554221110000 0000111 12222 44445555555543321
Q ss_pred --CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEE
Q 000054 2454 --LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCG 2531 (2548)
Q Consensus 2454 --~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS 2531 (2548)
......+.. ++..++.++.+|.|..+|..+|+.+...+.. ....+... ....+.++.++
T Consensus 265 ~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-------------~~~~~~~~----~~~~~~l~v~~ 325 (376)
T 3q7m_A 265 RELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL-------------LHRLLTSP----VLYNGNLVVGD 325 (376)
T ss_dssp ECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT-------------TTSCCCCC----EEETTEEEEEC
T ss_pred ccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc-------------CCCcccCC----EEECCEEEEEe
Confidence 123334443 4667888889999999999999988765210 01111111 23333388888
Q ss_pred CCCcEEEEECCCCcc
Q 000054 2532 GDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2532 ~DGtIrIWDL~sg~l 2546 (2548)
.+|.|.++|..++..
T Consensus 326 ~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 326 SEGYLHWINVEDGRF 340 (376)
T ss_dssp TTSEEEEEETTTCCE
T ss_pred CCCeEEEEECCCCcE
Confidence 999999999988753
No 220
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.97 E-value=0.00027 Score=89.42 Aligned_cols=210 Identities=11% Similarity=0.056 Sum_probs=128.5
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCC--eEEE
Q 000054 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI--NVVV 2348 (2548)
Q Consensus 2271 ~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DG--tVrI 2348 (2548)
......|+|+++++.+++...++.|++||..++....+.. . ..... .+++++++.++++. .++ .|.+
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~------~-~~~~~-ia~~~~g~~l~~~d---~~~~~~I~~ 198 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP------G-FKGGK-PAVTKDKQRVYSIG---WEGTHTVYV 198 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE------T-CCBCB-CEECTTSSEEEEEB---SSTTCEEEE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec------c-CCCCc-eeEecCCCcEEEEe---cCCCceEEE
Confidence 3578999999999977877778999999998765332211 1 11122 56899999888875 333 7888
Q ss_pred EECCCCCCCcceee---ec-cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000054 2349 WDTLAPPTSSRASI---TC-HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl---~g-Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
+|.... .....+ .. +...+.+++++|.+ +.+++ +..++.|+.||. .++...... ...
T Consensus 199 ~d~~~~--~~~~~~g~~~~~~~~~p~~iav~p~~------g~lyv-~d~~~~I~~~d~---~~~~~~~~~-~~~------ 259 (409)
T 3hrp_A 199 YMKASG--WAPTRIGQLGSTFSGKIGAVALDETE------EWLYF-VDSNKNFGRFNV---KTQEVTLIK-QLE------ 259 (409)
T ss_dssp EEGGGT--TCEEEEEECCTTSCSCCCBCEECTTS------SEEEE-ECTTCEEEEEET---TTCCEEEEE-ECC------
T ss_pred EEcCCC--ceeEEeeeccchhcCCcEEEEEeCCC------CeEEE-EECCCcEEEEEC---CCCCEEEEe-ccc------
Confidence 887642 222222 12 44677889999953 44444 677889999994 333321110 000
Q ss_pred ccccccCCCCCCccCCCCCceEEEcccCCCCC--EEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccccccccc
Q 000054 2425 TCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS--VTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTF 2501 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~--VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsf 2501 (2548)
..++... ...++|+|+ +.++++-..++.|+.||.... +..+.+...
T Consensus 260 -------------------------~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~---- 308 (409)
T 3hrp_A 260 -------------------------LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSAT---- 308 (409)
T ss_dssp -------------------------CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTT----
T ss_pred -------------------------ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCC----
Confidence 0111111 138999995 666666677889999997643 223311000
Q ss_pred ccCcccCCCCce-----eecEEEEEEcCCe--EEEEE-CCCcEEEEECCCCc
Q 000054 2502 LQPSSRGFGGVV-----RAGVTDIQVVSRG--FLSCG-GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2502 l~~tl~GH~~~V-----~a~VtsLafSPdG--LaSGS-~DGtIrIWDL~sg~ 2545 (2548)
..|..+-. ......++++|+| +++-+ .+++|+.|++.++.
T Consensus 309 ----~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 309 ----QKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp ----CCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred ----CCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 01111000 0235788999999 55666 78999999977664
No 221
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.94 E-value=0.00011 Score=93.78 Aligned_cols=216 Identities=13% Similarity=0.037 Sum_probs=129.3
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC--
Q 000054 2224 AFSSHPLRPFFLVGS----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-- 2291 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS----------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-- 2291 (2548)
.+.++|||+++.++. .++.|.++|..+++.+..+..-... + .........++|+|||++++++..
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~--r-~~~g~~P~~~~~spDGk~lyV~n~~~ 198 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP--R-FLVGTYQWMNALTPDNKNLLFYQFSP 198 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC--C-CCBSCCGGGSEECTTSSEEEEEECSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc--c-cccCCCcceEEEcCCCCEEEEEecCC
Confidence 678899999888765 4778999999999988887542000 0 000123457899999999999874
Q ss_pred CCcEEEEEcCCCcccccccCccc-eeccCCcccEEE-------------------------------------EcCCCCE
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESC-LCFSSHAMDVSY-------------------------------------ITSSGSV 2333 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~-~t~~gH~~~V~a-------------------------------------fSpdGsl 2333 (2548)
++.|.+.|+.+++.....+.... ............ +.+++..
T Consensus 199 ~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~ 278 (426)
T 3c75_H 199 APAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGR 278 (426)
T ss_dssp SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCE
T ss_pred CCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCE
Confidence 57999999998764432221100 000000000111 2444444
Q ss_pred EEEEeccCCCCeEEEEECCCCCCCcceeee----------ccCCCeEEEEEccCCCCCCCCCCEEEEE-e---------C
Q 000054 2334 IAAAGHSSNGINVVVWDTLAPPTSSRASIT----------CHEGGARSISVFDNDLGSGSVSPLIVTG-G---------K 2393 (2548)
Q Consensus 2334 LATgG~SS~DGtVrIWDl~t~~~k~v~sl~----------gHs~~VtSLafsP~dlg~gs~g~lLVSG-S---------~ 2393 (2548)
++... ..+.|.+.|........+..+. ....+...+.++|+ +..+.+. . .
T Consensus 279 ~~~~s---~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d-------g~rlyVa~~~~~~gthk~~ 348 (426)
T 3c75_H 279 LVWPT---YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ-------SDRIYLLVDQRDEWKHKAA 348 (426)
T ss_dssp EEEEB---TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG-------GTEEEEEEEECCTTCTTSC
T ss_pred EEEEe---CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC-------CCEEEEEecccccccccCC
Confidence 44332 4456666665421100111110 01112223567777 3444333 2 1
Q ss_pred CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCC-EEEEE
Q 000054 2394 GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTS-LFLTG 2472 (2548)
Q Consensus 2394 DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~-~LaSG 2472 (2548)
++.|.+.| ..+.+.+..+. -+ .....++|+|+|+ ++++.
T Consensus 349 s~~VsVID---~~T~kvv~~I~-----------------------------------vg--~~P~gia~spDg~~~lyv~ 388 (426)
T 3c75_H 349 SRFVVVLN---AETGERINKIE-----------------------------------LG--HEIDSINVSQDAEPLLYAL 388 (426)
T ss_dssp EEEEEEEE---TTTCCEEEEEE-----------------------------------EE--EEECEEEECCSSSCEEEEE
T ss_pred CCEEEEEE---CCCCeEEEEEE-----------------------------------CC--CCcCeEEEccCCCEEEEEE
Confidence 35799999 56677766651 11 1367899999999 88888
Q ss_pred e-CCCcEEEEECCCCcEEEEe
Q 000054 2473 S-KDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2473 S-~DGtIrIWDl~Tgell~tL 2492 (2548)
. .++.|.|+|+.+++.+.++
T Consensus 389 n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 389 SAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ETTTTEEEEEETTTCCEEEEE
T ss_pred cCCCCeEEEEECCCCCEEEEe
Confidence 8 5999999999999999886
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.88 E-value=0.0011 Score=80.64 Aligned_cols=189 Identities=11% Similarity=0.036 Sum_probs=114.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----CcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----GTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D----GtVrV 2297 (2548)
+.++.++|+|+++++. .+ .|.+||..+++..... .... ......+.+++++|+|+.+++...+ +...+
T Consensus 92 v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~-~~~~-----~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 92 GSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA-ELES-----DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI 163 (326)
T ss_dssp EEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE-CSST-----TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred ceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe-eCCC-----CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEE
Confidence 4778888999877754 44 4999999887753322 1110 0112468999999999977655422 23445
Q ss_pred EEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCC-Cc-----ceeeeccCCCeEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPT-SS-----RASITCHEGGARS 2371 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~-k~-----v~sl~gHs~~VtS 2371 (2548)
|.+++++..... .......-.+++++|+.++.+. +.++.|.+||+....+ .. +..+......+..
T Consensus 164 ~~~~~g~~~~~~-------~~~~~~~~i~~s~dg~~lyv~~--~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~g 234 (326)
T 2ghs_A 164 YHVAKGKVTKLF-------ADISIPNSICFSPDGTTGYFVD--TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG 234 (326)
T ss_dssp EEEETTEEEEEE-------EEESSEEEEEECTTSCEEEEEE--TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE
T ss_pred EEEeCCcEEEee-------CCCcccCCeEEcCCCCEEEEEE--CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCe
Confidence 544433211100 0001111235899998776665 3678999999851112 21 1222233456778
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
+.+.++ +.+.++...++.|..|| . +++.+..+ .
T Consensus 235 i~~d~~-------G~lwva~~~~~~v~~~d---~-~g~~~~~i------------------------------------~ 267 (326)
T 2ghs_A 235 SVCDAE-------GHIWNARWGEGAVDRYD---T-DGNHIARY------------------------------------E 267 (326)
T ss_dssp EEECTT-------SCEEEEEETTTEEEEEC---T-TCCEEEEE------------------------------------E
T ss_pred eEECCC-------CCEEEEEeCCCEEEEEC---C-CCCEEEEE------------------------------------E
Confidence 888877 66777776778899999 3 34544443 2
Q ss_pred CCCCCEEEEEEe-CCCCEEEEEeC
Q 000054 2452 AHLGSVTRISTV-PNTSLFLTGSK 2474 (2548)
Q Consensus 2452 gH~~~VtsLafS-PdG~~LaSGS~ 2474 (2548)
.+...+++++|+ |+++.|+.++.
T Consensus 268 ~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 268 VPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCCCcEEEEEecCCCCEEEEEec
Confidence 344578999998 88876655544
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.87 E-value=0.00011 Score=92.09 Aligned_cols=76 Identities=5% Similarity=-0.172 Sum_probs=55.5
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC--
Q 000054 2224 AFSSHPLRPFFLVGS----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-- 2291 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS----------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-- 2291 (2548)
.+.++|||+++.++. .++.|.+||..+++.+.++....+.. . ........++++|||++++++..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~--~-~~g~~P~~ia~SpDGk~lyVan~~~ 145 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR--F-SVGPRVHIIGNCASSACLLFFLFGS 145 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--C-CBSCCTTSEEECTTSSCEEEEECSS
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc--c-ccCCCcceEEEcCCCCEEEEEccCC
Confidence 578889999888775 47899999999999999886421000 0 00023457899999999999875
Q ss_pred CCcEEE--EEcCC
Q 000054 2292 DGTVCT--WQLEV 2302 (2548)
Q Consensus 2292 DGtVrV--WDl~t 2302 (2548)
+..|.+ +|..+
T Consensus 146 ~~~v~V~~iD~~t 158 (368)
T 1mda_H 146 SAAAGLSVPGASD 158 (368)
T ss_dssp SCEEEEEETTTEE
T ss_pred CCeEEEEEEchhh
Confidence 467888 88865
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.81 E-value=3e-06 Score=105.56 Aligned_cols=181 Identities=15% Similarity=0.122 Sum_probs=95.8
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc
Q 000054 2282 YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR 2359 (2548)
Q Consensus 2282 dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v 2359 (2548)
++..+++++.||.|..||..+|+..-... . ..+.+ +..++.++++++ .|+.|+.||..+ ++.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~--------~--~~~~s~p~~~~g~~~v~~s---~dg~l~a~d~~t--G~~~ 72 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK--------E--DPVLQVPTHVEEPAFLPDP---NDGSLYTLGSKN--NEGL 72 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEE--------C--CCSCCCC-----CCEEECT---TTCCEEEC-------CCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEec--------C--CCceecceEcCCCEEEEeC---CCCEEEEEECCC--Ccee
Confidence 57889999999999999999987543211 1 11111 334666666653 899999999976 4444
Q ss_pred eeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccC
Q 000054 2360 ASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKP 2439 (2548)
Q Consensus 2360 ~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s 2439 (2548)
..+..+..... ..+|. ...+..+++|+.||.|+.|| ..+|+.+..+
T Consensus 73 w~~~~~~~~~~--~~sp~----~~~~~~v~~g~~dg~v~a~D---~~tG~~~w~~------------------------- 118 (369)
T 2hz6_A 73 TKLPFTIPELV--QASPC----RSSDGILYMGKKQDIWYVID---LLTGEKQQTL------------------------- 118 (369)
T ss_dssp EECSCCHHHHH--TTCSC----C-----CCCCEEEEEEEEEC---CC---------------------------------
T ss_pred eeeeccCcccc--ccCce----EecCCEEEEEeCCCEEEEEE---CCCCcEEEEe-------------------------
Confidence 33332211000 00111 00134778888999999999 5667765443
Q ss_pred CCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEE
Q 000054 2440 GDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2440 ~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
..+. ...++|++..+++++.||.|+.||.++|+.+.+++. .++. .
T Consensus 119 -----------~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~------------~~~~----~---- 163 (369)
T 2hz6_A 119 -----------SSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY------------FDYA----A---- 163 (369)
T ss_dssp -----------------------------EEEEEEEEEEECCCSSSSSCCCEEEE------------EEEC----C----
T ss_pred -----------cCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec------------cccc----C----
Confidence 1111 123456888999999999999999999998765520 0011 1
Q ss_pred EEEcC----Ce-EEEEECCCcEEEEECCCCcc
Q 000054 2520 IQVVS----RG-FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2520 LafSP----dG-LaSGS~DGtIrIWDL~sg~l 2546 (2548)
.++++ ++ ++.++.||.|+.||..+|..
T Consensus 164 ~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 164 SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp BCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred ccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 12333 24 77889999999999988753
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.78 E-value=0.0011 Score=89.19 Aligned_cols=270 Identities=12% Similarity=0.057 Sum_probs=146.6
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC------CCcEEEEEcCCCc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL------DGTVCTWQLEVGG 2304 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~------DGtVrVWDl~tgk 2304 (2548)
+..+++++.|+.|..+|..+|+.+-.+................+ . .+..+++++. +|.|..+|.++|+
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~----v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPR----V--FKGKVIIGNGGAEYGVRGYITAYDAETGE 201 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcE----E--ECCEEEEEecccccCCCCEEEEEECCCCc
Confidence 56788889999999999999999888764201000000000111 1 2445555543 7999999999987
Q ss_pred ccccccCccce---------------ecc---------CCcc--cEEEEcCCCCEEEEEeccCCCC--------------
Q 000054 2305 RSNVRPMESCL---------------CFS---------SHAM--DVSYITSSGSVIAAAGHSSNGI-------------- 2344 (2548)
Q Consensus 2305 ~i~i~p~~s~~---------------t~~---------gH~~--~V~afSpdGslLATgG~SS~DG-------------- 2344 (2548)
..-........ ... +... ....+++++.+++.+. .++
T Consensus 202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~---~~~~~w~~~~~~~~~gd 278 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGT---GNGSPWSHKVRSPKGGD 278 (677)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEEC---CCEESSCHHHHSTTCCC
T ss_pred EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEEC---CCCccccCCCCCccCCC
Confidence 54211110000 000 0000 1224778888887764 332
Q ss_pred -----eEEEEECCCCCCCcceeeec--cC-------CCeEEEEEccCCCCCCCCC---CEEEEEeCCCcEEEEeCCcccc
Q 000054 2345 -----NVVVWDTLAPPTSSRASITC--HE-------GGARSISVFDNDLGSGSVS---PLIVTGGKGGDVGIHDFRYIAT 2407 (2548)
Q Consensus 2345 -----tVrIWDl~t~~~k~v~sl~g--Hs-------~~VtSLafsP~dlg~gs~g---~lLVSGS~DGtVrLWDLR~l~T 2407 (2548)
.|..+|..+ ++.+-.++. |. .....+....+ + ..++.++.+|.|+++| ..+
T Consensus 279 ~~~~~sv~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~d-------G~~~~~l~~~~~~G~l~~lD---~~t 346 (677)
T 1kb0_A 279 NLYLASIVALDPDT--GKYKWHYQETPGDNWDYTSTQPMILADIKIA-------GKPRKVILHAPKNGFFFVLD---RTN 346 (677)
T ss_dssp CTTTTEEEEECTTT--CCEEEEEESSTTCCSCCCCCSCCEEEEEEET-------TEEEEEEEECCTTSEEEEEE---TTT
T ss_pred CeeeEEEEEEECCC--CCEEEEEecCCCcccccccCCCcEEEecccC-------CcEeeEEEEECCCCEEEEEE---CCC
Confidence 488889876 555544442 21 11112222222 3 5889999999999999 678
Q ss_pred CceeeeecCCCCCCCccccccccCCCCCCccC-----CCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeC--------
Q 000054 2408 GKTKKHKHSDRGGSSINTCAHADAQTGSGSKP-----GDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK-------- 2474 (2548)
Q Consensus 2408 Gk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s-----~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~-------- 2474 (2548)
|+.+......... .... +..+|+.+.. ......++.-..+...+ ..++++|++.++++...
T Consensus 347 G~~l~~~~~~~~~---~~~~--~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w-~~~a~dp~~~~~yv~~~~~~~~~~~ 420 (677)
T 1kb0_A 347 GKFISAKNFVPVN---WASG--YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNW-HPMSFNPQTGLVYLPAQNVPVNLMD 420 (677)
T ss_dssp CCEEEEEESSCCS---SEEE--ECTTSCEEECGGGGCTTSCEECSSCTTCSSCS-SCCEEETTTTEEEEEEEECCCEEEE
T ss_pred CCEeccccccccC---cccc--cCCCCceeeccccCcCCCccEECcCcccccCC-CCceEcCCCCEEEEeChhcceeeec
Confidence 8887665322110 0000 0011111000 00000011001111111 35678888777776543
Q ss_pred -----------------------------------CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEE
Q 000054 2475 -----------------------------------DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2475 -----------------------------------DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
.|.|..||+.+|+.+.+++. +..++..
T Consensus 421 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---------------~~~~~~g--- 482 (677)
T 1kb0_A 421 DKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---------------VSPWNGG--- 482 (677)
T ss_dssp CTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---------------SSSCCCC---
T ss_pred ccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---------------CCCCcCc---
Confidence 27899999999999887731 1111122
Q ss_pred EEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000054 2520 IQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2520 LafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
.+..++ ++.++.||.+++||..++..
T Consensus 483 -~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 483 -TLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp -EEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred -ceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 233333 67889999999999998753
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.74 E-value=0.0035 Score=84.72 Aligned_cols=166 Identities=11% Similarity=0.008 Sum_probs=93.1
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe------CCCcEEEEEcCCCc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA------LDGTVCTWQLEVGG 2304 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS------~DGtVrVWDl~tgk 2304 (2548)
+..+++++.|+.|..+|..+|+.+-.+................+. .++ .++.++ .+|.|..||.++|+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~ 194 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-----VNG-KVVIGNGGAEFGVRGYVTAYDAETGK 194 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE-----ECC-EEEEEeCCCccCCCCEEEEEECCCCc
Confidence 457888889999999999999988777542010000000011111 134 444443 37899999999987
Q ss_pred ccccccC---ccce------------ecc--------CCc--ccEEEEcCCCCEEEEEeccCCCC---------------
Q 000054 2305 RSNVRPM---ESCL------------CFS--------SHA--MDVSYITSSGSVIAAAGHSSNGI--------------- 2344 (2548)
Q Consensus 2305 ~i~i~p~---~s~~------------t~~--------gH~--~~V~afSpdGslLATgG~SS~DG--------------- 2344 (2548)
..-.... .... ... ++. -...++++++.+++.+. .++
T Consensus 195 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~---~~g~~w~~~~~~~~~gd~ 271 (689)
T 1yiq_A 195 EAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGV---GNGSLWDPKWRSQAKGDN 271 (689)
T ss_dssp EEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEEC---CCEESSCHHHHHTTCSCC
T ss_pred EEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeC---CCCCccccCCCCCCCCCc
Confidence 5422110 0000 000 000 01235778888888764 454
Q ss_pred ----eEEEEECCCCCCCcceeeec--cC-------CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCcee
Q 000054 2345 ----NVVVWDTLAPPTSSRASITC--HE-------GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTK 2411 (2548)
Q Consensus 2345 ----tVrIWDl~t~~~k~v~sl~g--Hs-------~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l 2411 (2548)
.|..+|..+ ++.+-.++. |. ..+.......+. .....++.++.+|.++++| ..+|+.+
T Consensus 272 ~y~~~v~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G----~~~~~v~~~~~~G~l~~lD---~~tG~~l 342 (689)
T 1yiq_A 272 LFLSSIVAVNADT--GEYVWHYQTTPGDAWDYTATQHMILAELPIDG----KPRKVLMQAPKNGFFYVID---RATGELL 342 (689)
T ss_dssp TTTTEEEEEETTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETT----EEEEEEEECCTTSEEEEEE---TTTCCEE
T ss_pred eeeeeEEEEEccC--CceeEeeecCCcccccccCCCCcEEEeeccCC----cEEEEEEEECCCCeEEEEE---CCCCCEe
Confidence 399999987 566555443 22 111111111120 0012788999999999999 6788887
Q ss_pred eee
Q 000054 2412 KHK 2414 (2548)
Q Consensus 2412 ~tl 2414 (2548)
...
T Consensus 343 ~~~ 345 (689)
T 1yiq_A 343 SAK 345 (689)
T ss_dssp EEE
T ss_pred ccc
Confidence 554
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.68 E-value=0.005 Score=75.72 Aligned_cols=256 Identities=10% Similarity=0.038 Sum_probs=140.8
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000054 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
++..+.+++.++.|..+|..+|+.+-.+..... .....+ . .+..++.++.+|.|..+|.++|+..-..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~------~~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~ 169 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE------ALSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTV 169 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSC------CCSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc------eEcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 356788889999999999999998766643110 011111 1 2457888999999999999988644321
Q ss_pred cCcc-ceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC-C---eEE---EEEccCCCCC
Q 000054 2310 PMES-CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG-G---ARS---ISVFDNDLGS 2381 (2548)
Q Consensus 2310 p~~s-~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~-~---VtS---LafsP~dlg~ 2381 (2548)
.... ..........+. .+..++.+. .++.+..+|..+ ++.+........ . +.. +...|.
T Consensus 170 ~~~~~~~~~~~~~~~~~----~~~~v~~g~---~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~p~---- 236 (376)
T 3q7m_A 170 NLDMPSLSLRGESAPTT----AFGAAVVGG---DNGRVSAVLMEQ--GQMIWQQRISQATGSTEIDRLSDVDTTPV---- 236 (376)
T ss_dssp ECCC-----CCCCCCEE----ETTEEEECC---TTTEEEEEETTT--CCEEEEEECCC-----------CCCCCCE----
T ss_pred eCCCCceeecCCCCcEE----ECCEEEEEc---CCCEEEEEECCC--CcEEEEEecccCCCCcccccccccCCCcE----
Confidence 1100 000111111221 134555553 688999999876 444433322110 0 000 000110
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEcccCC-------
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYIPKAH------- 2453 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~~gH------- 2453 (2548)
..+..+..++.+|.+..+| ..+|+.+....... ....... ++.. ++..++.+..++...+.
T Consensus 237 -~~~~~v~~~~~~g~l~~~d---~~tG~~~w~~~~~~------~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~ 305 (376)
T 3q7m_A 237 -VVNGVVFALAYNGNLTALD---LRSGQIMWKRELGS------VNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSD 305 (376)
T ss_dssp -EETTEEEEECTTSCEEEEE---TTTCCEEEEECCCC------EEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECT
T ss_pred -EECCEEEEEecCcEEEEEE---CCCCcEEeeccCCC------CCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecc
Confidence 0134788888899999999 56777765542111 1111111 2222 44445555555432221
Q ss_pred --CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEE
Q 000054 2454 --LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCG 2531 (2548)
Q Consensus 2454 --~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS 2531 (2548)
...+..... .+..|+.++.+|.|.++|..+|+.+..++. ....+.+. .....+.|+.++
T Consensus 306 ~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~--------------~~~~~~~~---~~~~~~~l~v~~ 366 (376)
T 3q7m_A 306 LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV--------------DSSGFQTE---PVAADGKLLIQA 366 (376)
T ss_dssp TTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC--------------CTTCBCSC---CEEETTEEEEEB
T ss_pred cCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec--------------CCCcceeC---CEEECCEEEEEe
Confidence 112222222 356788899999999999999999876631 11111111 123333388899
Q ss_pred CCCcEEEEE
Q 000054 2532 GDGSVKLIQ 2540 (2548)
Q Consensus 2532 ~DGtIrIWD 2540 (2548)
.||.|..|+
T Consensus 367 ~~G~l~~~~ 375 (376)
T 3q7m_A 367 KDGTVYSIT 375 (376)
T ss_dssp TTSCEEEEE
T ss_pred CCCEEEEEe
Confidence 999999987
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.66 E-value=0.0014 Score=88.21 Aligned_cols=202 Identities=13% Similarity=0.139 Sum_probs=121.0
Q ss_pred EEEEEcCCCCEEEEEECCC-------------eEEEEEcCCCce--eEEEeccCCCCCCCCC-CCCCeEEEEEccCCCEE
Q 000054 2223 RAFSSHPLRPFFLVGSSNT-------------HIYLWEFGKDKA--TATYGVLPAANVPPPY-ALASISALQFDHYGHRF 2286 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DG-------------sVrLWDl~tg~~--l~t~~~l~ghs~~~~~-H~~~VtsVaFSPdG~~L 2286 (2548)
..++|+ ||+.|+.++.+. .|++|++.++.. ...+.. .. |...+.++.|+|||+++
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~--------~~~~~~~~~~~~~SpDg~~l 248 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA--------IPAQHHRYVGATVTEDDRFL 248 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC--------SGGGCCSEEEEEECTTSCEE
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec--------CCCCCeEEEEEEEcCCCCEE
Confidence 456799 999999887774 399999987653 233321 12 23457899999999988
Q ss_pred EEEeC----CCcEEEEEcCCCcccccccCccceeccCCcccEE-EEcCCCCEEEEEecc-CCCCeEEEEECCCCCCCcce
Q 000054 2287 ASAAL----DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS-YITSSGSVIAAAGHS-SNGINVVVWDTLAPPTSSRA 2360 (2548)
Q Consensus 2287 aSGS~----DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~-afSpdGslLATgG~S-S~DGtVrIWDl~t~~~k~v~ 2360 (2548)
+.... +..|.++|+.++... ...+..+..... .++++|..|+..+.. ...+.|..+|+..+......
T Consensus 249 ~~~~~~~~~~~~i~~~d~~~~~~~-------~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~ 321 (693)
T 3iuj_A 249 LISAANSTSGNRLYVKDLSQENAP-------LLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR 321 (693)
T ss_dssp EEEEESSSSCCEEEEEETTSTTCC-------CEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE
T ss_pred EEEEccCCCCcEEEEEECCCCCCc-------eEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccE
Confidence 65433 248899998765311 112333333332 256666655544311 01367999998764222245
Q ss_pred eeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-CCC--cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc
Q 000054 2361 SITCHEGGARSISVFDNDLGSGSVSPLIVTGG-KGG--DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS 2437 (2548)
Q Consensus 2361 sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~DG--tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v 2437 (2548)
.+..|...+. .|++. ++.|+... .+| .|++||+ . +...+.+.
T Consensus 322 ~l~~~~~~~~--~~s~~-------g~~lv~~~~~~g~~~l~~~d~---~-g~~~~~l~---------------------- 366 (693)
T 3iuj_A 322 DLIPERQQVL--TVHSG-------SGYLFAEYMVDATARVEQFDY---E-GKRVREVA---------------------- 366 (693)
T ss_dssp EEECCCSSCE--EEEEE-------TTEEEEEEEETTEEEEEEECT---T-SCEEEEEC----------------------
T ss_pred EEecCCCCEE--EEEEE-------CCEEEEEEEECCeeEEEEEEC---C-CCeeEEee----------------------
Confidence 6667776665 77777 45555554 454 6888884 3 23333320
Q ss_pred cCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEECCCCcE
Q 000054 2438 KPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD----GDVKLWDAKAAQL 2488 (2548)
Q Consensus 2438 ~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D----GtIrIWDl~Tgel 2488 (2548)
....+.+..+.++|+++.++....+ ++|..||+.+++.
T Consensus 367 -------------~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 367 -------------LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp -------------CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred -------------cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 1233455666677777655544433 7888899887764
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.61 E-value=0.0019 Score=87.08 Aligned_cols=118 Identities=13% Similarity=0.034 Sum_probs=69.8
Q ss_pred CCeEEEEEcCCCceeEEEeccCCCC-CCC------------C---------CCCCCeEEEEEccCCCEEEEEeCCC----
Q 000054 2240 NTHIYLWEFGKDKATATYGVLPAAN-VPP------------P---------YALASISALQFDHYGHRFASAALDG---- 2293 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~l~t~~~l~ghs-~~~------------~---------~H~~~VtsVaFSPdG~~LaSGS~DG---- 2293 (2548)
+|.|+.+|..+|+.+-.+....... ... . .+......+.+++++..++.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 7999999999999988776432110 000 0 1112224678899999999887764
Q ss_pred ---------------cEEEEEcCCCcccccccCccce--eccCCcccEE-EEcCCC---CEEEEEeccCCCCeEEEEECC
Q 000054 2294 ---------------TVCTWQLEVGGRSNVRPMESCL--CFSSHAMDVS-YITSSG---SVIAAAGHSSNGINVVVWDTL 2352 (2548)
Q Consensus 2294 ---------------tVrVWDl~tgk~i~i~p~~s~~--t~~gH~~~V~-afSpdG---slLATgG~SS~DGtVrIWDl~ 2352 (2548)
+|..+|.++|+..-........ .+......+. ....+| ..++.+. .+|.++++|..
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~---~~G~l~~lD~~ 345 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP---KNGFFFVLDRT 345 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC---TTSEEEEEETT
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC---CCCEEEEEECC
Confidence 5999999988754321110000 0011122232 233467 5666654 89999999998
Q ss_pred CCCCCcceee
Q 000054 2353 APPTSSRASI 2362 (2548)
Q Consensus 2353 t~~~k~v~sl 2362 (2548)
+ ++.+..+
T Consensus 346 t--G~~l~~~ 353 (677)
T 1kb0_A 346 N--GKFISAK 353 (677)
T ss_dssp T--CCEEEEE
T ss_pred C--CCEeccc
Confidence 7 5554433
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.54 E-value=0.0066 Score=77.57 Aligned_cols=222 Identities=15% Similarity=0.075 Sum_probs=125.6
Q ss_pred CCCCEEEE-EECCCeEEEEEcCCC----ceeEEEe--ccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC------CcE
Q 000054 2229 PLRPFFLV-GSSNTHIYLWEFGKD----KATATYG--VLPAANVPPPYALASISALQFDHYGHRFASAALD------GTV 2295 (2548)
Q Consensus 2229 PdG~~LAS-GS~DGsVrLWDl~tg----~~l~t~~--~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D------GtV 2295 (2548)
+++++|+. |..++.|.++|+.+. +..++++ .+.. ......-..+...|+| .++++..+ |.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~-----~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKK-----VSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHH-----HHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccc-----ccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 67776664 677889999999755 4555552 0000 0001234567788999 77777665 789
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEecc----------------CCCCeEEEEECCCCCCCcc
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS----------------SNGINVVVWDTLAPPTSSR 2359 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~S----------------S~DGtVrIWDl~t~~~k~v 2359 (2548)
.+.|.++.+.+...+.. ....+...+ .+++|+++.+++.... ..+.+|.+||+.+ .+.+
T Consensus 167 ~vlD~~T~~v~~~~~~~--~~~~~~~Yd-~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~--~k~~ 241 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEID--RGDQYLAYD-FWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK--RKRI 241 (462)
T ss_dssp EEECTTTCCEEEECCSB--CTTCCCCCC-EEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT--TEEE
T ss_pred EEEECCCCeEEEEEccC--CCCccccce-EEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC--CcEe
Confidence 99999887644322110 000011112 2478999988886200 0268999999986 4556
Q ss_pred eeeecc--CCCeEEEEE--ccCCCCCCCCCCEEEEEe------CCCcEEEEeCCccccCcee--eeecCCCCCCCccccc
Q 000054 2360 ASITCH--EGGARSISV--FDNDLGSGSVSPLIVTGG------KGGDVGIHDFRYIATGKTK--KHKHSDRGGSSINTCA 2427 (2548)
Q Consensus 2360 ~sl~gH--s~~VtSLaf--sP~dlg~gs~g~lLVSGS------~DGtVrLWDLR~l~TGk~l--~tl~~~~~~s~~~~~~ 2427 (2548)
..+..- ......+.| +|+ ++++.+++ .+++|.+|... .++.. +.+.
T Consensus 242 ~tI~vg~~g~~P~~i~f~~~Pd-------g~~aYV~~e~~~~~Lss~V~v~~~d---~g~~~~~~vId------------ 299 (462)
T 2ece_A 242 HSLTLGEENRMALELRPLHDPT-------KLMGFINMVVSLKDLSSSIWLWFYE---DGKWNAEKVIE------------ 299 (462)
T ss_dssp EEEESCTTEEEEEEEEECSSTT-------CCEEEEEEEEETTTCCEEEEEEEEE---TTEEEEEEEEE------------
T ss_pred eEEecCCCCCccceeEeeECCC-------CCEEEEEEeeeccCCCceEEEEEec---CCceeEEEEEe------------
Confidence 665532 134555656 777 56555554 67788887732 23211 1110
Q ss_pred cccCCCCCCccCCCCCceEEEc---ccCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECC---CCcEEEEe
Q 000054 2428 HADAQTGSGSKPGDQNGMLWYI---PKAHLGSVTRISTVPNTSLFLTGSK-DGDVKLWDAK---AAQLVYHW 2492 (2548)
Q Consensus 2428 vafSpdGk~v~s~D~sv~Iwdi---~~gH~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~---Tgell~tL 2492 (2548)
. +...... .+=.+ +.+-......+.++|||++|+++.. .+.|.++|+. +.+++..+
T Consensus 300 --i-~~~~v~~------~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I 362 (462)
T 2ece_A 300 --I-PAEPLEG------NLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKV 362 (462)
T ss_dssp --E-CCEECCS------SCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEE
T ss_pred --C-CCccccc------cccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEE
Confidence 0 0000000 00000 0001235678999999999988876 7899999986 34566555
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.49 E-value=0.0035 Score=84.62 Aligned_cols=116 Identities=9% Similarity=0.032 Sum_probs=67.9
Q ss_pred CCCeEEEEEcCCCceeEEEeccCCCCCCC---------------------CCCCCCeEEEEEccCCCEEEEEeCCCc---
Q 000054 2239 SNTHIYLWEFGKDKATATYGVLPAANVPP---------------------PYALASISALQFDHYGHRFASAALDGT--- 2294 (2548)
Q Consensus 2239 ~DGsVrLWDl~tg~~l~t~~~l~ghs~~~---------------------~~H~~~VtsVaFSPdG~~LaSGS~DGt--- 2294 (2548)
.+|.|+.||..+|+.+-.+...++..... ..+......+.++|++..++.+..++.
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWD 260 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccc
Confidence 37899999999999887775432111000 011112236788998899999988864
Q ss_pred ----------------EEEEEcCCCcccccccCccce--eccCCcccEEE-EcCCCC---EEEEEeccCCCCeEEEEECC
Q 000054 2295 ----------------VCTWQLEVGGRSNVRPMESCL--CFSSHAMDVSY-ITSSGS---VIAAAGHSSNGINVVVWDTL 2352 (2548)
Q Consensus 2295 ----------------VrVWDl~tgk~i~i~p~~s~~--t~~gH~~~V~a-fSpdGs---lLATgG~SS~DGtVrIWDl~ 2352 (2548)
|..+|.++|+..-........ .+......+.. ...+|+ .++.+. .+|.++++|.+
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~---~~G~l~~lD~~ 337 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP---KNGFFYVIDRA 337 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC---TTSEEEEEETT
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC---CCCeEEEEECC
Confidence 999999999754321110000 00011111221 223554 566653 89999999997
Q ss_pred CCCCCcc
Q 000054 2353 APPTSSR 2359 (2548)
Q Consensus 2353 t~~~k~v 2359 (2548)
+ ++.+
T Consensus 338 t--G~~l 342 (689)
T 1yiq_A 338 T--GELL 342 (689)
T ss_dssp T--CCEE
T ss_pred C--CCEe
Confidence 6 4544
No 232
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.43 E-value=0.0017 Score=77.90 Aligned_cols=192 Identities=10% Similarity=0.062 Sum_probs=109.8
Q ss_pred CCeEEEEEccCCC-EEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEE
Q 000054 2272 ASISALQFDHYGH-RFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~-~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrI 2348 (2548)
.......|+++|+ .++++..++.|..|+.. ++... +..+...+ .+++++|+++++.. .++.|..
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~---------~~~~~~~~~gl~~d~dG~l~v~~~---~~~~v~~ 111 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDV---------LLDATAFTNGNAVDAQQRLVHCEH---GRRAITR 111 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEE---------EEESCSCEEEEEECTTSCEEEEET---TTTEEEE
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEE---------EeCCCCccceeeECCCCCEEEEEC---CCCEEEE
Confidence 4567899999998 56677778999999873 43111 11122222 35889999776642 4678999
Q ss_pred EECCCCCCCcceeeecc-----CCCeEEEEEccCCCCCCCCCCEEEE----EeC-------------CCcEEEEeCCccc
Q 000054 2349 WDTLAPPTSSRASITCH-----EGGARSISVFDNDLGSGSVSPLIVT----GGK-------------GGDVGIHDFRYIA 2406 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~gH-----s~~VtSLafsP~dlg~gs~g~lLVS----GS~-------------DGtVrLWDLR~l~ 2406 (2548)
||.. ++ +..+..+ ...++.+.+.++ +.+.+| |.. .+.|..+| ..
T Consensus 112 ~~~~---g~-~~~~~~~~~~~~~~~~~~i~~d~d-------G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d---~~ 177 (305)
T 3dr2_A 112 SDAD---GQ-AHLLVGRYAGKRLNSPNDLIVARD-------GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP---PD 177 (305)
T ss_dssp ECTT---SC-EEEEECEETTEECSCCCCEEECTT-------SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC---SS
T ss_pred ECCC---CC-EEEEEeccCCCccCCCCCEEECCC-------CCEEEeCcCCCccccccccccccccCCCeEEEEc---CC
Confidence 9974 22 2222211 123566777776 566665 221 13344444 22
Q ss_pred cCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC------CcEEE
Q 000054 2407 TGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD------GDVKL 2480 (2548)
Q Consensus 2407 TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D------GtIrI 2480 (2548)
+++.. .. . .......++|+|+++.|+.+..+ +.|.+
T Consensus 178 ~g~~~----------------------------------~~---~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~ 219 (305)
T 3dr2_A 178 GSPLQ----------------------------------RM---A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITA 219 (305)
T ss_dssp SCCCE----------------------------------EE---E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEE
T ss_pred CCcEE----------------------------------EE---e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEE
Confidence 22211 11 1 12345789999999988777665 78999
Q ss_pred EECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2481 WDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2481 WDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
||+..+. +... ..+ . ....+ ....++++++| |..++.+| |.+|+.+..
T Consensus 220 ~~~~~~~-l~~~------~~~-~---~~~~~----~pdgi~~d~~G~lwv~~~~g-v~~~~~~g~ 268 (305)
T 3dr2_A 220 FAWRDGA-LHDR------RHF-A---SVPDG----LPDGFCVDRGGWLWSSSGTG-VCVFDSDGQ 268 (305)
T ss_dssp EEEETTE-EEEE------EEE-E---CCSSS----CCCSEEECTTSCEEECCSSE-EEEECTTSC
T ss_pred EEecCCC-ccCC------eEE-E---ECCCC----CCCeEEECCCCCEEEecCCc-EEEECCCCC
Confidence 9987654 2211 000 0 00011 12345788999 66555554 888887544
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.39 E-value=0.0063 Score=74.53 Aligned_cols=210 Identities=9% Similarity=0.040 Sum_probs=126.5
Q ss_pred EEEEEEcCCCCEEEEEEC-----CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEe---CC
Q 000054 2222 TRAFSSHPLRPFFLVGSS-----NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAA---LD 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~-----DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS---~D 2292 (2548)
+.+++++++|+++++-.. ++.|.+||..+++.+..+..... ...+...+..+++++++..+ ++.. .+
T Consensus 69 p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~----~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 69 VLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP----ITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp EEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT----TSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred eeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh----hcccccccceEEEecCCCEEEEEcCccCCC
Confidence 588899999987776544 68899999999987777653111 11123457899999865444 5544 67
Q ss_pred CcEEEEEcCCCcccccccC----cc---ceeccCC--------------cccE--EEEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2293 GTVCTWQLEVGGRSNVRPM----ES---CLCFSSH--------------AMDV--SYITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~----~s---~~t~~gH--------------~~~V--~afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
+.|.+||+.+++....... .. .....+. ...+ .+++|+|+.++++. ...+.+..+
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~--~~~~~l~~~ 222 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP--MHSTSMYRI 222 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE--SSCSEEEEE
T ss_pred CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe--CCCCeEEEE
Confidence 8999999987653221100 00 0000000 0011 35899999888775 234455555
Q ss_pred ECCC-CCCC-----cce--eeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC
Q 000054 2350 DTLA-PPTS-----SRA--SITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS 2421 (2548)
Q Consensus 2350 Dl~t-~~~k-----~v~--sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s 2421 (2548)
+... .... ... ...++.+....+++.++ +.++++...++.|.+||. .+++. ..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~-------G~l~va~~~~~~V~~~d~---~~G~~-~~~------- 284 (343)
T 2qe8_A 223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD-------HNIYVGDLAHSAIGVITS---ADRAY-KLL------- 284 (343)
T ss_dssp EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT-------CCEEEEEGGGTEEEEEET---TTTEE-EEE-------
T ss_pred EHHHhcCCCCChhhhhcceEecccCCCCceEEECCC-------CCEEEEccCCCeEEEEEC---CCCCE-EEE-------
Confidence 5321 0000 001 12244556667888887 779999889999999993 23432 221
Q ss_pred CccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000054 2422 SINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWD 2482 (2548)
Q Consensus 2422 ~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWD 2482 (2548)
.. ..+.....+++|++++.++++.+..+.+.+|.
T Consensus 285 -------------------------~~--~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 285 -------------------------VT--DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp -------------------------EE--CGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred -------------------------EE--CCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 00 11245688999999999888887655554443
No 234
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.36 E-value=0.011 Score=71.03 Aligned_cols=212 Identities=13% Similarity=0.040 Sum_probs=127.5
Q ss_pred CeEEEEEccCCCEEEEEeC--CCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEE
Q 000054 2273 SISALQFDHYGHRFASAAL--DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWD 2350 (2548)
Q Consensus 2273 ~VtsVaFSPdG~~LaSGS~--DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWD 2350 (2548)
....+.|++++..+++.+. ++.|.++|..+++.....+ ...+... ..+..++..+..+. -.++.+.++|
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~------l~~~~fg-eGi~~~g~~lyv~t--~~~~~v~viD 92 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK------MDDSYFG-EGLTLLNEKLYQVV--WLKNIGFIYD 92 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE------CCTTCCE-EEEEEETTEEEEEE--TTCSEEEEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe------cCCCcce-EEEEEeCCEEEEEE--ecCCEEEEEE
Confidence 4689999998765555543 5799999999987543221 1122111 11223455565554 2789999999
Q ss_pred CCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccccc
Q 000054 2351 TLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHAD 2430 (2548)
Q Consensus 2351 l~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vaf 2430 (2548)
..+ .+.+..+..-...-+.+. ++. ..++++ ..++.|.++| ..+.+.+..+.....
T Consensus 93 ~~t--~~v~~~i~~g~~~g~glt--~Dg------~~l~vs-~gs~~l~viD---~~t~~v~~~I~Vg~~----------- 147 (266)
T 2iwa_A 93 RRT--LSNIKNFTHQMKDGWGLA--TDG------KILYGS-DGTSILYEID---PHTFKLIKKHNVKYN----------- 147 (266)
T ss_dssp TTT--TEEEEEEECCSSSCCEEE--ECS------SSEEEE-CSSSEEEEEC---TTTCCEEEEEECEET-----------
T ss_pred CCC--CcEEEEEECCCCCeEEEE--ECC------CEEEEE-CCCCeEEEEE---CCCCcEEEEEEECCC-----------
Confidence 976 566666643212223343 442 335544 4688999999 566666655410000
Q ss_pred CCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCC
Q 000054 2431 AQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFG 2510 (2548)
Q Consensus 2431 SpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~ 2510 (2548)
...-..++.+.|. +|...+....++.|.+-|..+++.+.+++-.-..... ...++.
T Consensus 148 --------------------~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~---~~~~~~ 203 (266)
T 2iwa_A 148 --------------------GHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKL---IDEGFR 203 (266)
T ss_dssp --------------------TEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHH---HHTTCT
T ss_pred --------------------CcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccc---cccccc
Confidence 0011236678887 7766666556889999999999999988421000000 000011
Q ss_pred CceeecEEEEEEcCCe---EEEEECCCcEEEEECCCC
Q 000054 2511 GVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2511 ~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
. ......|+++|++ ++|+...++|..-++...
T Consensus 204 ~--~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 204 D--IDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp T--CCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred c--cCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 0 1235678999998 778889999998887543
No 235
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.33 E-value=0.01 Score=71.21 Aligned_cols=207 Identities=7% Similarity=-0.041 Sum_probs=127.9
Q ss_pred EEEEEEcCCCCEEEEEEC--CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSS--NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~--DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVW 2298 (2548)
...+.|+|++.++++.+. ++.|++.|..+++.+..+.. ..+ .....+++. ++.+ ++.-.++.+.++
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-~~~--------~fgeGi~~~--g~~lyv~t~~~~~v~vi 91 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM-DDS--------YFGEGLTLL--NEKLYQVVWLKNIGFIY 91 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC-CTT--------CCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec-CCC--------cceEEEEEe--CCEEEEEEecCCEEEEE
Confidence 467888998766665543 68999999999998888753 111 122345554 4445 445567899999
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC-----CCeEEEE
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE-----GGARSIS 2373 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs-----~~VtSLa 2373 (2548)
|..+.+.+...+.. .++. +.+++||+.++++. .++.|.++|..+ .+.+..+..-. ..++.+.
T Consensus 92 D~~t~~v~~~i~~g-----~~~g---~glt~Dg~~l~vs~---gs~~l~viD~~t--~~v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 92 DRRTLSNIKNFTHQ-----MKDG---WGLATDGKILYGSD---GTSILYEIDPHT--FKLIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp ETTTTEEEEEEECC-----SSSC---CEEEECSSSEEEEC---SSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEE
T ss_pred ECCCCcEEEEEECC-----CCCe---EEEEECCCEEEEEC---CCCeEEEEECCC--CcEEEEEEECCCCcccccceeEE
Confidence 99987644322210 1221 23556777666654 578999999976 45555554211 2467788
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
|. + +.+.+....++.|.+.| ..+++.+..+......... . ..+ ..-
T Consensus 159 ~~-d-------g~lyvn~~~~~~V~vID---~~tg~V~~~I~~~g~~~~~------~-~~~----------------~~~ 204 (266)
T 2iwa_A 159 YI-N-------GEVWANIWQTDCIARIS---AKDGTLLGWILLPNLRKKL------I-DEG----------------FRD 204 (266)
T ss_dssp EE-T-------TEEEEEETTSSEEEEEE---TTTCCEEEEEECHHHHHHH------H-HTT----------------CTT
T ss_pred EE-C-------CEEEEecCCCCeEEEEE---CCCCcEEEEEECCCccccc------c-ccc----------------ccc
Confidence 77 4 44556665789999999 7788887776210000000 0 000 011
Q ss_pred CCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCC
Q 000054 2454 LGSVTRISTVPNTS-LFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~-~LaSGS~DGtIrIWDl~Tg 2486 (2548)
......++|+|+++ +++|+...++|.+-++...
T Consensus 205 ~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 205 IDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 23568999999875 5566667888888887643
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.28 E-value=0.011 Score=70.50 Aligned_cols=218 Identities=10% Similarity=0.041 Sum_probs=130.0
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p 2310 (2548)
+..+..|+.++.|..+|.. ++....+.. +...+.++...+++. +..++.++.|..+|.. ++......
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~----------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~ 173 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKT----------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK 173 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEEC----------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcC----------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe
Confidence 4567778889999999988 766555432 113355566666776 6668888999999988 54322111
Q ss_pred CccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEE
Q 000054 2311 MESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVT 2390 (2548)
Q Consensus 2311 ~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVS 2390 (2548)
.............++.+++. . +.|..+| .. ++...........+.++...++ + .+..
T Consensus 174 ------~~~~~~~~~~~d~~g~l~v~-----t-~~l~~~d-~~--g~~~~~~~~~~~~~~~~~~~~~-------g-~l~v 230 (330)
T 3hxj_A 174 ------TNDAITSAASIGKDGTIYFG-----S-DKVYAIN-PD--GTEKWNFYAGYWTVTRPAISED-------G-TIYV 230 (330)
T ss_dssp ------CSSCCCSCCEECTTCCEEEE-----S-SSEEEEC-TT--SCEEEEECCSSCCCSCCEECTT-------S-CEEE
T ss_pred ------cCCCceeeeEEcCCCEEEEE-----e-CEEEEEC-CC--CcEEEEEccCCcceeceEECCC-------C-eEEE
Confidence 11111111124556765543 3 7888898 33 4444444444456777777665 3 5666
Q ss_pred EeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEE
Q 000054 2391 GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFL 2470 (2548)
Q Consensus 2391 GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~La 2470 (2548)
++.++.|..+|. +++.+.... .....+..+.+++++. |.
T Consensus 231 ~t~~~gl~~~~~----~g~~~~~~~------------------------------------~~~~~~~~~~~~~~g~-l~ 269 (330)
T 3hxj_A 231 TSLDGHLYAINP----DGTEKWRFK------------------------------------TGKRIESSPVIGNTDT-IY 269 (330)
T ss_dssp EETTTEEEEECT----TSCEEEEEE------------------------------------CSSCCCSCCEECTTSC-EE
T ss_pred EcCCCeEEEECC----CCCEeEEee------------------------------------CCCCccccceEcCCCe-EE
Confidence 777888888872 334433321 1111122344555554 55
Q ss_pred EEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2471 TGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2471 SGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
.++.+|.|..+|. +++.+..+. -.... +.++..+++| |..++.+|.+++...+..
T Consensus 270 v~t~~ggl~~~d~-~g~~~~~~~--------------~~~~~----~~~~~~d~~g~l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 270 FGSYDGHLYAINP-DGTEKWNFE--------------TGSWI----IATPVIDENGTIYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp EECTTCEEEEECT-TSCEEEEEE--------------CSSCC----CSCCEECTTCCEEEECTTSCEEEEEC---
T ss_pred EecCCCCEEEECC-CCcEEEEEE--------------cCCcc----ccceEEcCCCEEEEEcCCCeEEEEecccc
Confidence 6778889999996 777776552 01111 2334677888 889999999999887654
No 237
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.14 E-value=0.048 Score=65.79 Aligned_cols=255 Identities=9% Similarity=0.033 Sum_probs=136.4
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCC----------CCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV----------PPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~----------~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.+++++++|.++.++..++.|..||..+++. ..+........ ........+..+++.+++..|+.+...
T Consensus 22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 4566778998778888899999998776543 33321100000 000011358899999833346666555
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEEEcC-CCCEEEEEecc--------------CCCCeEEEEECCCCCCC
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHS--------------SNGINVVVWDTLAPPTS 2357 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSp-dGslLATgG~S--------------S~DGtVrIWDl~t~~~k 2357 (2548)
+.|..+|..++....+........+ ..... .++.+ +|++.++-... ..++.|..+|... ++
T Consensus 101 ~~i~~~d~~~g~~~~~~~~~~~~~~-~~p~~-i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--~~ 176 (322)
T 2fp8_A 101 YHLSVVGSEGGHATQLATSVDGVPF-KWLYA-VTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST--KE 176 (322)
T ss_dssp TEEEEECTTCEECEEEESEETTEEC-SCEEE-EEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT--TE
T ss_pred CCEEEEeCCCCEEEEecccCCCCcc-cccce-EEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC--CE
Confidence 5688888765431111100000000 01112 24788 88877764210 0136788888754 22
Q ss_pred cceeeeccCCCeEEEEEccCCCCCCCCCCE-EEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000054 2358 SRASITCHEGGARSISVFDNDLGSGSVSPL-IVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2358 ~v~sl~gHs~~VtSLafsP~dlg~gs~g~l-LVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
+..+.........++++++ +.. .++-..++.|..+|+.....+.
T Consensus 177 -~~~~~~~~~~p~gia~~~d-------g~~lyv~d~~~~~I~~~~~~~~~~~~--------------------------- 221 (322)
T 2fp8_A 177 -TTLLLKELHVPGGAEVSAD-------SSFVLVAEFLSHQIVKYWLEGPKKGT--------------------------- 221 (322)
T ss_dssp -EEEEEEEESCCCEEEECTT-------SSEEEEEEGGGTEEEEEESSSTTTTC---------------------------
T ss_pred -EEEeccCCccCcceEECCC-------CCEEEEEeCCCCeEEEEECCCCcCCc---------------------------
Confidence 2222222234567888888 554 4454667889999953100000
Q ss_pred ccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeC----------CCcEEEEECCCCcEEEEecccccccccccCcc
Q 000054 2437 SKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK----------DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSS 2506 (2548)
Q Consensus 2437 v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~----------DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl 2506 (2548)
.+.+.. ..+ ...++++++|.+.++... .+.|..+|. .++.+..+...
T Consensus 222 -------~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~----------- 278 (322)
T 2fp8_A 222 -------AEVLVK---IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLP----------- 278 (322)
T ss_dssp -------EEEEEE---CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECC-----------
T ss_pred -------cceEEe---CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECC-----------
Confidence 111110 112 677899999987777654 467888886 47777766211
Q ss_pred cCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2507 RGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2507 ~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
.|. .. ..++.+++. ++ +++....+.|.+++++.+
T Consensus 279 ~g~--~~-~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 279 PPF--AG-EHFEQIQEH-DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TTT--TT-SCCCEEEEE-TTEEEEECSSCSEEEEEEC---
T ss_pred CCC--cc-ccceEEEEe-CCEEEEeecCCCceEEEecccc
Confidence 010 00 113344553 44 455567888999998754
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.14 E-value=0.25 Score=57.69 Aligned_cols=227 Identities=12% Similarity=0.041 Sum_probs=127.0
Q ss_pred CEEEEEECCCeEEEEEcCCCcee-----EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEEcCCCcc
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKAT-----ATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQLEVGGR 2305 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l-----~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWDl~tgk~ 2305 (2548)
++|..+.. +.|+.++++..... ..+.. + ...+..++|++++..|+.+ ..++.|..++.+.+..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~-~---------~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~ 70 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHI-P---------AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP 70 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE-E---------EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecC-C---------CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc
Confidence 45555443 47888888754321 11110 0 1347899999976655555 4568999999875532
Q ss_pred cccccCccceeccC-CcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEEEEEccCCCCCCC
Q 000054 2306 SNVRPMESCLCFSS-HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARSISVFDNDLGSGS 2383 (2548)
Q Consensus 2306 i~i~p~~s~~t~~g-H~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtSLafsP~dlg~gs 2383 (2548)
.... ..+ ....-.++++++..++.+. ..++.|.+++... .....+. ........++++|++
T Consensus 71 ~~~~-------~~~~~~p~~ia~d~~~~~lyv~d--~~~~~I~~~~~~g---~~~~~~~~~~~~~P~~i~vd~~~----- 133 (267)
T 1npe_A 71 TTII-------RQDLGSPEGIALDHLGRTIFWTD--SQLDRIEVAKMDG---TQRRVLFDTGLVNPRGIVTDPVR----- 133 (267)
T ss_dssp EEEE-------CTTCCCEEEEEEETTTTEEEEEE--TTTTEEEEEETTS---CSCEEEECSSCSSEEEEEEETTT-----
T ss_pred EEEE-------ECCCCCccEEEEEecCCeEEEEE--CCCCEEEEEEcCC---CCEEEEEECCCCCccEEEEeeCC-----
Confidence 1111 011 1111124777766666554 3678999999863 2222222 222467889999863
Q ss_pred CCCEEEEEeC--CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEE
Q 000054 2384 VSPLIVTGGK--GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIS 2461 (2548)
Q Consensus 2384 ~g~lLVSGS~--DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLa 2461 (2548)
+.+.++... .+.|..+++. +.....+ . .........++
T Consensus 134 -g~lyv~~~~~~~~~I~~~~~d----g~~~~~~--------------------------------~---~~~~~~P~gia 173 (267)
T 1npe_A 134 -GNLYWTDWNRDNPKIETSHMD----GTNRRIL--------------------------------A---QDNLGLPNGLT 173 (267)
T ss_dssp -TEEEEEECCSSSCEEEEEETT----SCCCEEE--------------------------------E---CTTCSCEEEEE
T ss_pred -CEEEEEECCCCCcEEEEEecC----CCCcEEE--------------------------------E---ECCCCCCcEEE
Confidence 444455433 4677777742 1211111 0 11123567899
Q ss_pred EeCCCCEEEEE-eCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEE
Q 000054 2462 TVPNTSLFLTG-SKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLI 2539 (2548)
Q Consensus 2462 fSPdG~~LaSG-S~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIW 2539 (2548)
++|++..|+.+ ...+.|.++|...+.....+ .+.. ....++...+. +++....+.|.++
T Consensus 174 ~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~--------------~~~~-----~P~gi~~d~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 174 FDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL--------------EGLQ-----YPFAVTSYGKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTEEEEEEEE--------------ECCC-----SEEEEEEETTEEEEEETTTTEEEEE
T ss_pred EcCCCCEEEEEECCCCEEEEEecCCCceEEEe--------------cCCC-----CceEEEEeCCEEEEEECCCCeEEEE
Confidence 99987666555 45679999999754433222 1111 12344565444 4555567899999
Q ss_pred ECCCCc
Q 000054 2540 QLEDYQ 2545 (2548)
Q Consensus 2540 DL~sg~ 2545 (2548)
|..++.
T Consensus 235 d~~~g~ 240 (267)
T 1npe_A 235 DLAISK 240 (267)
T ss_dssp ETTTTE
T ss_pred eCCCCC
Confidence 988764
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.13 E-value=0.32 Score=66.35 Aligned_cols=283 Identities=13% Similarity=0.150 Sum_probs=160.1
Q ss_pred EEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
.+.++...++|.+.+ |+.+ -|.+||..+++.. .+...... +.......|.++...++|. +-.|+.++-|..++.
T Consensus 264 ~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~-~~~~~~~~--~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~ 337 (795)
T 4a2l_A 264 YIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFA-SYSSNPVE--NGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHP 337 (795)
T ss_dssp BEEEEEECTTSCEEE-EESS-CEEEEETTTTEEE-EECCCTTS--TTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECG
T ss_pred eEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEE-EEecCCCC--CCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCC
Confidence 368888888887555 4444 4888998776533 33211100 1122336799999999888 556777777888887
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee---------ccCCCe
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT---------CHEGGA 2369 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~---------gHs~~V 2369 (2548)
.++........... ..-....|.+ ...+|++.+.. .++-|..||..+. . ...+. -....|
T Consensus 338 ~~~~~~~~~~~~~~--~~l~~~~V~~i~~d~~g~lWiGt----~~~Gl~~~~~~~~--~-~~~~~~~~~~~~~~l~~~~v 408 (795)
T 4a2l_A 338 IRNRFKNIRNIPYK--NSLSDNVVSCIVEDKDKNLWIGT----NDGGLNLYNPITQ--R-FTSYTLQEDESARGIGSNNI 408 (795)
T ss_dssp GGGSSEEECCCTTS--SSCSCSSEEEEEECTTSCEEEEE----SSSCEEEECTTTC--C-EEEECCC------CCSCSCE
T ss_pred CcccceEEcCCCCC--CCCCCCeeEEEEECCCCCEEEEE----CCCCeEEEcCCCC--c-EEEEecCCCCcccCCCCccE
Confidence 65432111110000 0112234555 45667766543 6778999998642 2 22221 123568
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEE
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWY 2448 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwd 2448 (2548)
.++...++ +..|..|+.++-|..+| ..+++..................+...++|.+ +++. +.+..++
T Consensus 409 ~~i~~d~~-------g~~lWigt~~~Gl~~~d---~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~ 477 (795)
T 4a2l_A 409 KAVYVDEK-------KSLVYIGTHAGGLSILH---RNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFN 477 (795)
T ss_dssp EEEEEETT-------TTEEEEEETTTEEEEEE---TTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEE
T ss_pred EEEEEcCC-------CCEEEEEeCcCceeEEe---CCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEe
Confidence 88887766 45477788878899999 44454332211111111122334445556665 5554 4455555
Q ss_pred ccc--------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCcee
Q 000054 2449 IPK--------------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVR 2514 (2548)
Q Consensus 2449 i~~--------------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~ 2514 (2548)
... -....|.++..+++|.+.+... +-|..||..+++. .+..... ..+...
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~-----------~~~l~~ 542 (795)
T 4a2l_A 478 PEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILP-----------VSNVTK 542 (795)
T ss_dssp TTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSC-----------SCGGGG
T ss_pred CCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCC-----------CCCCCC
Confidence 211 1235799999999998777554 4588899877765 3310000 000111
Q ss_pred ecEEEEEEcCCe-EEEEECCCcEEEEECCCCc
Q 000054 2515 AGVTDIQVVSRG-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2515 a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
..|.++..+++| +-.|+.. -|..||..++.
T Consensus 543 ~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 543 LFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQ 573 (795)
T ss_dssp SCEEEEEECTTSCEEEEESS-CEEEEETTTTE
T ss_pred CeeEEEEECCCCCEEEEeCC-CceeECCCCCc
Confidence 246778888888 6656655 57778876553
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.11 E-value=0.0052 Score=80.80 Aligned_cols=213 Identities=11% Similarity=-0.005 Sum_probs=128.1
Q ss_pred CCCCEEEEEEC-CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEE-c-cCCCEEEEEe---------------
Q 000054 2229 PLRPFFLVGSS-NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQF-D-HYGHRFASAA--------------- 2290 (2548)
Q Consensus 2229 PdG~~LASGS~-DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaF-S-PdG~~LaSGS--------------- 2290 (2548)
+||+++..... ++.|.+.|+.+.+....+....+ .....+++ + |++.++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g---------~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA---------KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC---------CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC---------CCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 57888887654 55799999999998886643111 45788888 5 8999998885
Q ss_pred ---CCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC------------------------
Q 000054 2291 ---LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG------------------------ 2343 (2548)
Q Consensus 2291 ---~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D------------------------ 2343 (2548)
.++.+.+.|.++.+.....+ ..+ .-+-..++|+|+++++++..+..
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI~------Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQVL------VSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEEE------ESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred ccccCceEEEEECCCCeEEEEEE------eCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 34588999998764322111 122 23334588899888877632211
Q ss_pred -----------CeEEEEECCCCCCCc-ceeeeccCCCeEEEEEccCCCCCCCCCCE-EEEEeCCCcEEEEeCCccccCce
Q 000054 2344 -----------INVVVWDTLAPPTSS-RASITCHEGGARSISVFDNDLGSGSVSPL-IVTGGKGGDVGIHDFRYIATGKT 2410 (2548)
Q Consensus 2344 -----------GtVrIWDl~t~~~k~-v~sl~gHs~~VtSLafsP~dlg~gs~g~l-LVSGS~DGtVrLWDLR~l~TGk~ 2410 (2548)
+.|.+.|.++...+. +..+.. .....++.++|+ |++ ++++..+.+|.++|+.. .+.
T Consensus 243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPD-------Gk~v~V~~~~s~~VsVid~~~---~~~ 311 (595)
T 1fwx_A 243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPD-------KKHLCVAGKLSPTVTVLDVTR---FDA 311 (595)
T ss_dssp HHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTT-------SSEEEEECTTSSBEEEEEGGG---HHH
T ss_pred EeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCC-------CCEEEEeCCCCCeEEEEECcc---ccc
Confidence 136667765411122 233322 235567888998 564 55555789999999642 110
Q ss_pred eeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-----
Q 000054 2411 KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA----- 2485 (2548)
Q Consensus 2411 l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T----- 2485 (2548)
. + +|++ .-....+..+ .-......++|+|+|...++.-.|+.|.+||+.+
T Consensus 312 ~--~------------------~~~l---~~~~~v~~~v--~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~ 366 (595)
T 1fwx_A 312 V--F------------------YENA---DPRSAVVAEP--ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAY 366 (595)
T ss_dssp H--H------------------HSCC---CGGGGEEECC--BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHH
T ss_pred c--c------------------cccc---CcccceEEEc--CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhh
Confidence 0 0 0000 0000000111 1123567899999994444555699999999987
Q ss_pred -----CcEEEEec
Q 000054 2486 -----AQLVYHWS 2493 (2548)
Q Consensus 2486 -----gell~tL~ 2493 (2548)
.+.+.+++
T Consensus 367 ~g~~~~~vi~kid 379 (595)
T 1fwx_A 367 AGEKVDPIKDKLD 379 (595)
T ss_dssp HTCSCCCEEEEEE
T ss_pred cccccceeEEEee
Confidence 56666663
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.10 E-value=0.0085 Score=76.56 Aligned_cols=170 Identities=8% Similarity=0.020 Sum_probs=103.7
Q ss_pred EEEEEEcCCCCEEEEEECC------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-----
Q 000054 2222 TRAFSSHPLRPFFLVGSSN------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----- 2290 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS----- 2290 (2548)
-..+...|+| ++++...+ |.|.+.|..+++.+.++..-.+ -..--..+.|+|+++.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~-------~~~~~Yd~~~~p~~~~mvsS~wg~p~ 211 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRG-------DQYLAYDFWWNLPNEVLVSSEWAVPN 211 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCT-------TCCCCCCEEEETTTTEEEECBCCCHH
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCC-------CccccceEEECCCCCEEEEccCcCcc
Confidence 4556777999 77765444 7899999999998888753111 012234688899999888884
Q ss_pred --------------CCCcEEEEEcCCCcccccccCccceecc-CCc--ccEEE-EcCCCCEEEEEeccC-----CCCeEE
Q 000054 2291 --------------LDGTVCTWQLEVGGRSNVRPMESCLCFS-SHA--MDVSY-ITSSGSVIAAAGHSS-----NGINVV 2347 (2548)
Q Consensus 2291 --------------~DGtVrVWDl~tgk~i~i~p~~s~~t~~-gH~--~~V~a-fSpdGslLATgG~SS-----~DGtVr 2347 (2548)
.+.+|.+||+.+++.....+ .. .+. ..|.. ++|++++..+++ - .+++|.
T Consensus 212 ~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~------vg~~g~~P~~i~f~~~Pdg~~aYV~~--e~~~~~Lss~V~ 283 (462)
T 2ece_A 212 TIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT------LGEENRMALELRPLHDPTKLMGFINM--VVSLKDLSSSIW 283 (462)
T ss_dssp HHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE------SCTTEEEEEEEEECSSTTCCEEEEEE--EEETTTCCEEEE
T ss_pred ccccccchhhhhhccCCEEEEEECCCCcEeeEEe------cCCCCCccceeEeeECCCCCEEEEEE--eeeccCCCceEE
Confidence 46899999999764332111 11 111 12222 699999888775 2 356777
Q ss_pred EEECCCCCCCcceee--ec----------------cCCCeEEEEEccCCCCCCCCCCEEEEE-eCCCcEEEEeCCccccC
Q 000054 2348 VWDTLAPPTSSRASI--TC----------------HEGGARSISVFDNDLGSGSVSPLIVTG-GKGGDVGIHDFRYIATG 2408 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl--~g----------------Hs~~VtSLafsP~dlg~gs~g~lLVSG-S~DGtVrLWDLR~l~TG 2408 (2548)
+|....+..+..+.+ .. -......|.++++ +++|.++ -..+.|.++|+....+.
T Consensus 284 v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D-------GrfLYVSnrg~d~VavfdV~d~~~~ 356 (462)
T 2ece_A 284 LWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD-------DKFLYLSLWGIGEVRQYDISNPFKP 356 (462)
T ss_dssp EEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT-------SCEEEEEETTTTEEEEEECSSTTSC
T ss_pred EEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC-------CCEEEEEeCCCCEEEEEEecCCCCc
Confidence 655432111111111 00 0245778899998 5655544 46789999996432233
Q ss_pred ceeeee
Q 000054 2409 KTKKHK 2414 (2548)
Q Consensus 2409 k~l~tl 2414 (2548)
+.+..+
T Consensus 357 ~lv~~I 362 (462)
T 2ece_A 357 VLTGKV 362 (462)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444443
No 242
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.04 E-value=0.038 Score=66.06 Aligned_cols=192 Identities=10% Similarity=0.068 Sum_probs=119.1
Q ss_pred EEEEEEcCCCCEEEEEECCC--eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DG--sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVW 2298 (2548)
...+.|+ ++.++.+++.+| .|+++|+.+++.+..+.. + .........++++.+..+ -.++.+.++
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-~----------~~~FgeGit~~g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-G----------KRYFGEGISDWKDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-C----------TTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-C----------CccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 5778888 677777777776 899999999999888753 1 223332233345555554 458899999
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc----C-CCeEEEE
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH----E-GGARSIS 2373 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH----s-~~VtSLa 2373 (2548)
|.++.+.+...+ ..+.... ++++++.++.+. .++.|.++|..+ .+.+..+... . ..++.+.
T Consensus 113 D~~t~~~~~ti~------~~~eG~g---lt~dg~~L~~Sd---Gs~~i~~iDp~T--~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 113 NIRNLRQVRSFN------YDGEGWG---LTHNDQYLIMSD---GTPVLRFLDPES--LTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp ETTTCCEEEEEE------CSSCCCC---EEECSSCEEECC---SSSEEEEECTTT--CSEEEEEECEETTEECCCEEEEE
T ss_pred ECccCcEEEEEE------CCCCceE---EecCCCEEEEEC---CCCeEEEEcCCC--CeEEEEEEeccCCccccccceeE
Confidence 999886543322 1222222 335666666543 367899999876 5555555432 1 3455677
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
|. + +.+.+..-.++.|.+.| ..+|+.+..+.......... . ...-
T Consensus 179 ~~-~-------G~lyan~w~~~~I~vID---p~tG~V~~~Id~~~L~~~~~--------------~----------~~~~ 223 (262)
T 3nol_A 179 WV-D-------GEIFANVWQTNKIVRID---PETGKVTGIIDLNGILAEAG--------------P----------LPSP 223 (262)
T ss_dssp EE-T-------TEEEEEETTSSEEEEEC---TTTCBEEEEEECTTGGGGSC--------------S----------CCSS
T ss_pred EE-C-------CEEEEEEccCCeEEEEE---CCCCcEEEEEECCcCccccc--------------c----------ccCc
Confidence 65 3 44665555788999999 78899888772211100000 0 0111
Q ss_pred CCCEEEEEEeCCCCEEEEEeC
Q 000054 2454 LGSVTRISTVPNTSLFLTGSK 2474 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~ 2474 (2548)
....+.||++|+++.|+..+.
T Consensus 224 ~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 224 IDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CCCEEEEEEETTTTEEEEEET
T ss_pred CCceEEEEEcCCCCEEEEECC
Confidence 235689999998877766664
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.99 E-value=0.25 Score=57.79 Aligned_cols=205 Identities=9% Similarity=0.020 Sum_probs=119.8
Q ss_pred EEEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWD 2299 (2548)
...+++++++..|. +-..++.|..++.+.+.....+.. .......+++++++..++.+ ..++.|.+++
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~----------~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~ 107 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ----------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAK 107 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT----------TCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC----------CCCCccEEEEEecCCeEEEEECCCCEEEEEE
Confidence 57889999765554 555678999999876543322211 12467899999976555554 5567999999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEEEEEccCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARSISVFDND 2378 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtSLafsP~d 2378 (2548)
.+.......... .+ ..... .++++++..+..+......+.|..+++.. .....+. ..-.....+++++++
T Consensus 108 ~~g~~~~~~~~~----~~-~~P~~-i~vd~~~g~lyv~~~~~~~~~I~~~~~dg---~~~~~~~~~~~~~P~gia~d~~~ 178 (267)
T 1npe_A 108 MDGTQRRVLFDT----GL-VNPRG-IVTDPVRGNLYWTDWNRDNPKIETSHMDG---TNRRILAQDNLGLPNGLTFDAFS 178 (267)
T ss_dssp TTSCSCEEEECS----SC-SSEEE-EEEETTTTEEEEEECCSSSCEEEEEETTS---CCCEEEECTTCSCEEEEEEETTT
T ss_pred cCCCCEEEEEEC----CC-CCccE-EEEeeCCCEEEEEECCCCCcEEEEEecCC---CCcEEEEECCCCCCcEEEEcCCC
Confidence 874321111000 00 11112 24788655554443110146888888753 2222222 223467889999873
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT 2458 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt 2458 (2548)
+.+.++-...+.|..+|.. .. ....+ . .+ .....
T Consensus 179 ------~~lyv~d~~~~~I~~~~~~---g~-~~~~~--------------------------------~---~~-~~~P~ 212 (267)
T 1npe_A 179 ------SQLCWVDAGTHRAECLNPA---QP-GRRKV--------------------------------L---EG-LQYPF 212 (267)
T ss_dssp ------TEEEEEETTTTEEEEEETT---EE-EEEEE--------------------------------E---EC-CCSEE
T ss_pred ------CEEEEEECCCCEEEEEecC---CC-ceEEE--------------------------------e---cC-CCCce
Confidence 4466666677899999943 21 11111 0 11 11234
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2459 RISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2459 sLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.++.+ .+.++++....+.|.++|..+++.+.++
T Consensus 213 gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 213 AVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence 56654 3444444445789999999999998877
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.98 E-value=0.27 Score=66.99 Aligned_cols=275 Identities=11% Similarity=0.042 Sum_probs=155.2
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.++...++|.+.+ |+.++-+..|+..+++....... .+...|.++...+++...+ |+.++-+..||..+
T Consensus 176 ~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~---------~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~ 244 (795)
T 4a2l_A 176 ASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPI---------LGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKT 244 (795)
T ss_dssp EEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC-------------CCCEEEEEEEETTEEEE-EEBSSCEEEEETTT
T ss_pred EEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCC---------CCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCC
Confidence 5566667776555 56655588899877654321100 1236799999888877555 44444488898876
Q ss_pred CcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee--------ccCCCeEEE
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT--------CHEGGARSI 2372 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~--------gHs~~VtSL 2372 (2548)
++....... ......-....|.+ ..++|.+.+.. .+ .|.+||.... ....+. -....|.++
T Consensus 245 ~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWigt----~~-Gl~~~~~~~~---~~~~~~~~~~~~~~l~~~~i~~i 315 (795)
T 4a2l_A 245 KEIKNYLHS-PSNPKSISSNYIRSLAMDSQNRLWIGT----FN-DLNIYHEGTD---SFASYSSNPVENGSLSQRSVRSI 315 (795)
T ss_dssp TEEEEECCC-TTCTTSCSCSBEEEEEECTTSCEEEEE----SS-CEEEEETTTT---EEEEECCCTTSTTSCSSSCEEEE
T ss_pred CeEEEeecC-CCCccccCCCeEEEEEEcCCCCEEEEe----CC-hhheEcCCCC---eEEEEecCCCCCCCCCCCcEEEE
Confidence 542221100 00000011234554 45677766553 34 6888997642 222221 123568999
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC---CCCCccccccccCCCCCC-ccCCCCCceEEE
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR---GGSSINTCAHADAQTGSG-SKPGDQNGMLWY 2448 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~---~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwd 2448 (2548)
...+++ .|..|+.++-|..+|. .++.. ..+.... .........+...++|.+ +++.++.+..++
T Consensus 316 ~~D~~g--------~lWigt~~~Gl~~~~~---~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~ 383 (795)
T 4a2l_A 316 FMDSQG--------GMWLGTYFGGLNYYHP---IRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYN 383 (795)
T ss_dssp EECTTS--------CEEEEESSSCEEEECG---GGGSS-EEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEEC
T ss_pred EEeCCc--------CEEEEECCCCeEEeCC---Ccccc-eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEc
Confidence 887763 5677888888999983 23322 1211111 111122334445556666 666665555554
Q ss_pred ccc----------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCc
Q 000054 2449 IPK----------------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGV 2512 (2548)
Q Consensus 2449 i~~----------------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~ 2512 (2548)
... .....|.++..+++|..|..|+.++-|.+||..+++... +... . + ....
T Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~--~-----~--~l~~-- 451 (795)
T 4a2l_A 384 PITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQR--N-----S--QLVN-- 451 (795)
T ss_dssp TTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTT--T-----S--CCSC--
T ss_pred CCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecC--C-----C--CcCC--
Confidence 211 113579999999999856667777779999998877543 3100 0 0 0011
Q ss_pred eeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2513 VRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2513 V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
..|.++..+++| |..|+. +.+.+|+..++
T Consensus 452 --~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~ 481 (795)
T 4a2l_A 452 --ENVYAILPDGEGNLWLGTL-SALVRFNPEQR 481 (795)
T ss_dssp --SCEEEEEECSSSCEEEEES-SCEEEEETTTT
T ss_pred --CeeEEEEECCCCCEEEEec-CceeEEeCCCC
Confidence 236777888888 666666 45788887665
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.87 E-value=0.037 Score=74.51 Aligned_cols=163 Identities=10% Similarity=0.010 Sum_probs=89.9
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC------CCcEEEEEcCCCc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL------DGTVCTWQLEVGG 2304 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~------DGtVrVWDl~tgk 2304 (2548)
+..+++++.|+.|..+|..+|+.+-.+....... ........+. .+..++++.. +|.|..+|.++|+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~-~~~~~~~P~v------~~~~v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK-PYSITGAPRV------VKGKVIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTS-SCBCCSCCEE------ETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCC-cceecCCCEE------ECCEEEEeCCCCCcCCCCEEEEEECCCCc
Confidence 4567788899999999999999887775421100 0000011111 1344555543 5899999999987
Q ss_pred ccccccC---ccce------------eccC-------Cccc---EEEEcCCCCEEEEEeccCCCC---------------
Q 000054 2305 RSNVRPM---ESCL------------CFSS-------HAMD---VSYITSSGSVIAAAGHSSNGI--------------- 2344 (2548)
Q Consensus 2305 ~i~i~p~---~s~~------------t~~g-------H~~~---V~afSpdGslLATgG~SS~DG--------------- 2344 (2548)
..-.... .... ...+ .... ..++++++.+++.+. .++
T Consensus 190 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~---~~g~~w~~~~~~~~~gd~ 266 (668)
T 1kv9_A 190 LAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGT---GNGSPWNREVRSPGGGDN 266 (668)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEEC---CCEESSCHHHHSTTCCCC
T ss_pred EEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeC---CCCCccccCCCCCCCCCc
Confidence 5422110 0000 0000 0001 124677777777764 444
Q ss_pred ----eEEEEECCCCCCCcceeeec--cC-------CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCcee
Q 000054 2345 ----NVVVWDTLAPPTSSRASITC--HE-------GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTK 2411 (2548)
Q Consensus 2345 ----tVrIWDl~t~~~k~v~sl~g--Hs-------~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l 2411 (2548)
.|..+|..+ ++.+-.++. |. .......+..+. .....++.++.+|.+.++| ..+|+.+
T Consensus 267 l~~~~v~AlD~~t--G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G----~~~~~v~~~~~~G~l~~lD---~~tG~~l 337 (668)
T 1kv9_A 267 LYLSSILAIRPDT--GKLAWHYQVTPGDSWDFTATQQITLAELNIDG----KPRKVLMQAPKNGFFYVLD---RTNGKLI 337 (668)
T ss_dssp TTTTEEEEECTTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETT----EEEEEEEECCTTSEEEEEE---TTTCCEE
T ss_pred eeeeeEEEEcCCC--CceeeEeecCCCccccccCCCCcEEEEeccCC----cEEEEEEEECCCCEEEEEE---CCCCCEe
Confidence 488889876 555544442 22 122222222220 0012688999999999999 6678776
Q ss_pred e
Q 000054 2412 K 2412 (2548)
Q Consensus 2412 ~ 2412 (2548)
.
T Consensus 338 ~ 338 (668)
T 1kv9_A 338 S 338 (668)
T ss_dssp E
T ss_pred c
Confidence 3
No 246
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.78 E-value=0.049 Score=74.19 Aligned_cols=155 Identities=10% Similarity=0.090 Sum_probs=89.7
Q ss_pred EEEEEEEc-CCCCEEEEE-ECCC----eEEEEEcCCC-ceeEE-EeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2221 STRAFSSH-PLRPFFLVG-SSNT----HIYLWEFGKD-KATAT-YGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2221 ~V~~VsfS-PdG~~LASG-S~DG----sVrLWDl~tg-~~l~t-~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.+...+|+ |||+++|-+ +.+| .|+++|+.++ +.+.. +. .....+.|+|||+.|+....|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-------------~~~~~~~WspDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-------------GTNGEIVWGPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-------------EECSCCEECSSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-------------CceeeEEEecCCCEEEEEEEC
Confidence 35788999 999988854 3233 5999999988 53211 10 113467899999988877765
Q ss_pred C-----cEEEEEcCCCcccccccCccceeccC--CcccEE-EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc--ceee
Q 000054 2293 G-----TVCTWQLEVGGRSNVRPMESCLCFSS--HAMDVS-YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASI 2362 (2548)
Q Consensus 2293 G-----tVrVWDl~tgk~i~i~p~~s~~t~~g--H~~~V~-afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~--v~sl 2362 (2548)
. .|.++++.++..... ..+.. ....+. .++|||+.|+....+.....|.++|+..+.... ....
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~------lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~ 315 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDV------CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR 315 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCE------EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS
T ss_pred CCCCCCEEEEEECCCCchhcE------EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee
Confidence 2 577777776532111 11111 111122 489999988765432245578888987642223 2222
Q ss_pred eccCCCeEEEEEccCCCCCCCCCCEEEEEeCC--C--cEEEEe
Q 000054 2363 TCHEGGARSISVFDNDLGSGSVSPLIVTGGKG--G--DVGIHD 2401 (2548)
Q Consensus 2363 ~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~D--G--tVrLWD 2401 (2548)
....+...++.|+.. +.+++....+ + .|..+|
T Consensus 316 ~~~~~~~~s~~~~~g-------~~l~~~t~~~~a~~~~L~~~d 351 (751)
T 2xe4_A 316 PREKGVRYDVQMHGT-------SHLVILTNEGGAVNHKLLIAP 351 (751)
T ss_dssp CCCTTCCEEEEEETT-------TEEEEEECTTTCTTCEEEEEE
T ss_pred cCCCCceEEEeeeeC-------CEEEEEeCCCCCCCcEEEEEc
Confidence 334455666665443 3345554444 3 444555
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.77 E-value=0.052 Score=64.94 Aligned_cols=195 Identities=10% Similarity=0.042 Sum_probs=116.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCC--cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2272 ASISALQFDHYGHRFASAALDG--TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DG--tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
.-...+.|+ ++.++.+++.+| .|+++|+++++.....+ +....-. ..+.++++.+.... -.++.+.++
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~------l~~~~Fg-eGit~~g~~ly~lt--w~~~~v~v~ 112 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE------LGKRYFG-EGISDWKDKIVGLT--WKNGLGFVW 112 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE------CCTTCCE-EEEEEETTEEEEEE--SSSSEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe------cCCccce-eEEEEeCCEEEEEE--eeCCEEEEE
Confidence 346788998 677777777776 99999999997543221 1111111 11333455555544 268999999
Q ss_pred ECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccc
Q 000054 2350 DTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHA 2429 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~va 2429 (2548)
|..+ .+.+..+..... -+.++ ++ +..|+.+..++.|.++| ..+.+.+..+...
T Consensus 113 D~~t--~~~~~ti~~~~e-G~glt--~d-------g~~L~~SdGs~~i~~iD---p~T~~v~~~I~V~------------ 165 (262)
T 3nol_A 113 NIRN--LRQVRSFNYDGE-GWGLT--HN-------DQYLIMSDGTPVLRFLD---PESLTPVRTITVT------------ 165 (262)
T ss_dssp ETTT--CCEEEEEECSSC-CCCEE--EC-------SSCEEECCSSSEEEEEC---TTTCSEEEEEECE------------
T ss_pred ECcc--CcEEEEEECCCC-ceEEe--cC-------CCEEEEECCCCeEEEEc---CCCCeEEEEEEec------------
Confidence 9976 666777664222 23444 33 33444444578899999 6666766665100
Q ss_pred cCCCCCCccCCCCCceEEEcccCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCccc-
Q 000054 2430 DAQTGSGSKPGDQNGMLWYIPKAHL-GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSR- 2507 (2548)
Q Consensus 2430 fSpdGk~v~s~D~sv~Iwdi~~gH~-~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~- 2507 (2548)
+ .+.. ..++.+.|. +|++.+..-.+..|.+.|.++|+.+..+.-.-.... ..
T Consensus 166 ------------------~--~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~-----~~~ 219 (262)
T 3nol_A 166 ------------------A--HGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAE-----AGP 219 (262)
T ss_dssp ------------------E--TTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGG-----SCS
T ss_pred ------------------c--CCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccc-----ccc
Confidence 0 1111 345567776 676666555688999999999999998842110000 00
Q ss_pred CCCCceeecEEEEEEcCCe---EEEEE
Q 000054 2508 GFGGVVRAGVTDIQVVSRG---FLSCG 2531 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG---LaSGS 2531 (2548)
.+ ........||++|++ ++||-
T Consensus 220 ~~--~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 220 LP--SPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CC--SSCCCEEEEEEETTTTEEEEEET
T ss_pred cc--CcCCceEEEEEcCCCCEEEEECC
Confidence 01 111345778999987 55653
No 248
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.73 E-value=0.0082 Score=71.54 Aligned_cols=246 Identities=11% Similarity=0.020 Sum_probs=142.8
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccc
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNV 2308 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i 2308 (2548)
.+|. +..|+.++.|..|| .+++....+.. +...+.++...++|. +..++.+ |..+|. +++....
T Consensus 29 ~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~----------~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~ 92 (330)
T 3hxj_A 29 KNGT-IYLGSSNKNLYAIN-TDGSVKWFFKS----------GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWR 92 (330)
T ss_dssp TTSC-EECSSTTTTTEEEC-TTSCEEESSCG----------GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGG
T ss_pred cCCe-EEEEcCCCEEEEEC-CCCcEEEEEec----------CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEE
Confidence 4444 55667788899999 77776444321 123456777776665 4445544 878885 4432211
Q ss_pred ccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEE
Q 000054 2309 RPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLI 2388 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lL 2388 (2548)
.. ..........+. ++ .+..++ .++.|..+|.. ++.......+...+.++...++ + .+
T Consensus 93 ~~------~~~~~~~~~~~~-~~-~l~v~t---~~~~l~~~d~~---g~~~~~~~~~~~~~~~~~~~~~-------g-~l 150 (330)
T 3hxj_A 93 FD------TKKAIVSDFTIF-ED-ILYVTS---MDGHLYAINTD---GTEKWRFKTKKAIYATPIVSED-------G-TI 150 (330)
T ss_dssp SC------C-----CCEEEE-TT-EEEEEC---TTSEEEEECTT---SCEEEEEECSSCCCSCCEECTT-------S-CE
T ss_pred EE------CCCCcccCceEE-CC-EEEEEe---cCCEEEEEcCC---CCEEEEEcCCCceeeeeEEcCC-------C-EE
Confidence 11 000000111122 44 455543 68899999975 2334444444444555555544 3 46
Q ss_pred EEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEc-------ccCCCCCEEEE
Q 000054 2389 VTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYI-------PKAHLGSVTRI 2460 (2548)
Q Consensus 2389 VSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi-------~~gH~~~VtsL 2460 (2548)
..|+.++.|..+| .. ++.+...... ......+...++|.+ ++. +.+..++. .......+.++
T Consensus 151 ~vgt~~~~l~~~d---~~-g~~~~~~~~~----~~~~~~~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~ 220 (330)
T 3hxj_A 151 YVGSNDNYLYAIN---PD-GTEKWRFKTN----DAITSAASIGKDGTIYFGS--DKVYAINPDGTEKWNFYAGYWTVTRP 220 (330)
T ss_dssp EEECTTSEEEEEC---TT-SCEEEEEECS----SCCCSCCEECTTCCEEEES--SSEEEECTTSCEEEEECCSSCCCSCC
T ss_pred EEEcCCCEEEEEC---CC-CCEeEEEecC----CCceeeeEEcCCCEEEEEe--CEEEEECCCCcEEEEEccCCcceece
Confidence 6788889999999 44 5555444211 112233344456665 333 55555541 11233567788
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEE
Q 000054 2461 STVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLI 2539 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIW 2539 (2548)
..+++|.+ ..++.++.|..+| .+++.+..+ ...... +..+.+.++| |..++.+|.|..+
T Consensus 221 ~~~~~g~l-~v~t~~~gl~~~~-~~g~~~~~~--------------~~~~~~----~~~~~~~~~g~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 221 AISEDGTI-YVTSLDGHLYAIN-PDGTEKWRF--------------KTGKRI----ESSPVIGNTDTIYFGSYDGHLYAI 280 (330)
T ss_dssp EECTTSCE-EEEETTTEEEEEC-TTSCEEEEE--------------ECSSCC----CSCCEECTTSCEEEECTTCEEEEE
T ss_pred EECCCCeE-EEEcCCCeEEEEC-CCCCEeEEe--------------eCCCCc----cccceEcCCCeEEEecCCCCEEEE
Confidence 88887755 4566789999996 778777544 444332 2345887788 9999999999999
Q ss_pred ECC
Q 000054 2540 QLE 2542 (2548)
Q Consensus 2540 DL~ 2542 (2548)
|.+
T Consensus 281 d~~ 283 (330)
T 3hxj_A 281 NPD 283 (330)
T ss_dssp CTT
T ss_pred CCC
Confidence 963
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.73 E-value=0.057 Score=71.15 Aligned_cols=252 Identities=10% Similarity=0.026 Sum_probs=150.8
Q ss_pred EEEEECCCeEEEEEcCCCceeEEEeccCCCCC-------------CC----------------CCCCCCeEEEEEcc---
Q 000054 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANV-------------PP----------------PYALASISALQFDH--- 2281 (2548)
Q Consensus 2234 LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~-------------~~----------------~~H~~~VtsVaFSP--- 2281 (2548)
+.+|+..|.|+|+-+.+++.+..+-.+..... .. ....+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 44799999999999999998888776543221 00 01112223345554
Q ss_pred --CCCEEEEEeCC-CcEEEEEcCCCcccccccCccceeccCCcccEEEE-c-CCCCEEEEEec---------------cC
Q 000054 2282 --YGHRFASAALD-GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYI-T-SSGSVIAAAGH---------------SS 2341 (2548)
Q Consensus 2282 --dG~~LaSGS~D-GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~af-S-pdGslLATgG~---------------SS 2341 (2548)
||++++.+..+ +.|.+.|+.+.+...+... -.+....-.++ + |++.++++++. ..
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-----p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~ 172 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-----PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN 172 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-----SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-----CCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccc
Confidence 78888777654 5799999998875442211 11121111223 5 88888877741 01
Q ss_pred CCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC---------------cEEEEeCCccc
Q 000054 2342 NGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG---------------DVGIHDFRYIA 2406 (2548)
Q Consensus 2342 ~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG---------------tVrLWDLR~l~ 2406 (2548)
.++.+.+.|..+ .+.+..+.-- +....++++|+ +.++++.+.+. .|.+.|...
T Consensus 173 ~~~~vtvID~~t--~~v~~qI~Vg-g~pd~~~~spd-------Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~-- 240 (595)
T 1fwx_A 173 YVNVFTAVDADK--WEVAWQVLVS-GNLDNCDADYE-------GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE-- 240 (595)
T ss_dssp EEEEEEEEETTT--TEEEEEEEES-SCCCCEEECSS-------SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH--
T ss_pred cCceEEEEECCC--CeEEEEEEeC-CCccceEECCC-------CCEEEEEecCcccCcchhhccccccceEEEeeccc--
Confidence 356899999875 4444444321 13455667887 67777777553 456666321
Q ss_pred cCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc--CCC--------CCEEEEEEeCCCCEEEEEe-CC
Q 000054 2407 TGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK--AHL--------GSVTRISTVPNTSLFLTGS-KD 2475 (2548)
Q Consensus 2407 TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~--gH~--------~~VtsLafSPdG~~LaSGS-~D 2475 (2548)
. ....++|+.... +.+.+.|..+ +.. ....++.++|||++++.++ .+
T Consensus 241 -~-------------------~~~v~~Gk~~~i--~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s 298 (595)
T 1fwx_A 241 -I-------------------EKAIAAGDYQEL--NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLS 298 (595)
T ss_dssp -H-------------------HHHHHHTCSEEE--TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTS
T ss_pred -e-------------------eEeccCCCeeEE--CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCC
Confidence 0 011223333111 3355555543 111 1234688999999887776 48
Q ss_pred CcEEEEECCCCc------------EEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEEC
Q 000054 2476 GDVKLWDAKAAQ------------LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2476 GtIrIWDl~Tge------------ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
.+|.++|+.+.+ .+.++ ..| .....++|+|+| .++.-.|+.|.+||+
T Consensus 299 ~~VsVid~~~~~~~~~~~l~~~~~v~~~v-------------~vG------~gP~h~aF~~dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 299 PTVTVLDVTRFDAVFYENADPRSAVVAEP-------------ELG------LGPLHTAFDGRGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp SBEEEEEGGGHHHHHHSCCCGGGGEEECC-------------BCC------SCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred CeEEEEECcccccccccccCcccceEEEc-------------CCC------CCcceEEECCCCeEEEEEecCCcEEEEEh
Confidence 899999998653 22222 111 224567999999 568889999999998
Q ss_pred CC
Q 000054 2542 ED 2543 (2548)
Q Consensus 2542 ~s 2543 (2548)
++
T Consensus 360 ~~ 361 (595)
T 1fwx_A 360 ED 361 (595)
T ss_dssp HH
T ss_pred hH
Confidence 75
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.72 E-value=0.048 Score=73.42 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=46.8
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCC-CCe-EEEEEccCCCEEEEEeCCCcEEEEEcCCCccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYAL-ASI-SALQFDHYGHRFASAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~-~~V-tsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i 2306 (2548)
+..+.+++.++.|.-+|..+|+.+-++....... ...... ..+ ..+.. .+..++.++.||.|..+|.++|+..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKV-KARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAI 140 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGG-GGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCcc-ccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEe
Confidence 4567777889999999999999887775321100 000000 000 11122 3567888999999999999999754
No 251
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.68 E-value=0.02 Score=76.69 Aligned_cols=117 Identities=12% Similarity=0.046 Sum_probs=69.6
Q ss_pred EEEcC-CCCEEEEEECCC-----------eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-
Q 000054 2225 FSSHP-LRPFFLVGSSNT-----------HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL- 2291 (2548)
Q Consensus 2225 VsfSP-dG~~LASGS~DG-----------sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~- 2291 (2548)
.++.| ++++++.|+.++ .+.+||..+++...... .+. .+.....++++..+++.++.|+.
T Consensus 191 ~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~-~~~------~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 191 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV-TVT------KHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE-EEC------SCCCSSCEEEECTTSCEEEECSSS
T ss_pred EEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc-cCC------CCCCccccccCCCCCCEEEeCCCC
Confidence 34447 888888887543 58899988765322111 110 01133446778889999999985
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccC---CCCeEEEEECCC
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS---NGINVVVWDTLA 2353 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS---~DGtVrIWDl~t 2353 (2548)
++.+.+||..+++-....+. .........+..++|++++.||... .-..+.+||..+
T Consensus 264 ~~~v~~yd~~t~~W~~~~~~-----~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 264 AKKTSLYDSSSDSWIPGPDM-----QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp TTCEEEEEGGGTEEEECCCC-----SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred CCceEEecCcCCceeECCCC-----CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 45899999887643222111 0111111223456899999987210 115689999875
No 252
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.61 E-value=0.084 Score=63.27 Aligned_cols=156 Identities=12% Similarity=0.052 Sum_probs=102.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ ++.. -.--.+++. .++..+..-.++.+.++|.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~--------~FgeGit~~-g~~Ly~ltw~~~~v~V~D~~ 124 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGN--------IFAEGLASD-GERLYQLTWTEGLLFTWSGM 124 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTT--------CCEEEEEEC-SSCEEEEESSSCEEEEEETT
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCC--------cceeEEEEe-CCEEEEEEccCCEEEEEECC
Confidence 4677776 4677778889999999999999988887 3321 111224443 23444445578999999999
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec--cC---CCeEEEEEcc
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC--HE---GGARSISVFD 2376 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g--Hs---~~VtSLafsP 2376 (2548)
+.+.+...+ ..+... .+.++++.++.+. .++.|.++|..+ .+.+..+.. +. ..++.+.|.
T Consensus 125 Tl~~~~ti~------~~~eGw---GLt~Dg~~L~vSd---Gs~~l~~iDp~T--~~v~~~I~V~~~g~~v~~lNeLe~~- 189 (268)
T 3nok_A 125 PPQRERTTR------YSGEGW---GLCYWNGKLVRSD---GGTMLTFHEPDG--FALVGAVQVKLRGQPVELINELECA- 189 (268)
T ss_dssp TTEEEEEEE------CSSCCC---CEEEETTEEEEEC---SSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEEEE-
T ss_pred cCcEEEEEe------CCCcee---EEecCCCEEEEEC---CCCEEEEEcCCC--CeEEEEEEeCCCCcccccccccEEe-
Confidence 886544322 122222 2346777777764 478999999876 555555543 21 244667766
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
+ +.+.+..-.++.|.+.| ..+|+.+..+
T Consensus 190 d-------G~lyanvw~s~~I~vID---p~TG~V~~~I 217 (268)
T 3nok_A 190 N-------GVIYANIWHSSDVLEID---PATGTVVGVI 217 (268)
T ss_dssp T-------TEEEEEETTCSEEEEEC---TTTCBEEEEE
T ss_pred C-------CEEEEEECCCCeEEEEe---CCCCcEEEEE
Confidence 3 44555555788999999 7788888776
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.50 E-value=0.24 Score=58.69 Aligned_cols=156 Identities=11% Similarity=0.037 Sum_probs=99.4
Q ss_pred EEEEEEcCCCCEEEEEECCC--eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DG--sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVW 2298 (2548)
...+.|++ +.++.+++.+| .|+.+|+.+++.+..+.. + ...........++.| ...-.++.+.++
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l-~----------~~~fgeGi~~~~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV-P----------PPYFGAGIVAWRDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC-C----------TTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC-C----------CCcceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 56778876 56666766654 899999999999888753 1 122222222234444 445678999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC-----CCeEEEE
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE-----GGARSIS 2373 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs-----~~VtSLa 2373 (2548)
|.++.+.+...+ ..+.. ..+.+++..++.+. .++.|.++|..+ .+.+..+.... ..++.+.
T Consensus 91 D~~tl~~~~ti~------~~~~G---wglt~dg~~L~vSd---gs~~l~~iDp~t--~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 91 DLATLTPRARFR------YPGEG---WALTSDDSHLYMSD---GTAVIRKLDPDT--LQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp ETTTTEEEEEEE------CSSCC---CEEEECSSCEEEEC---SSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEE
T ss_pred ECCcCcEEEEEe------CCCCc---eEEeeCCCEEEEEC---CCCeEEEEeCCC--CeEEEEEEEccCCcccccceeeE
Confidence 999886544322 12222 22345666555553 467899999876 55555554321 3456666
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
+. + +.+.+..-.+..|.+.| ..+|+.+..+
T Consensus 157 ~~-~-------G~lyanvw~s~~I~vID---p~tG~V~~~i 186 (243)
T 3mbr_X 157 WV-N-------GELLANVWLTSRIARID---PASGKVVAWI 186 (243)
T ss_dssp EE-T-------TEEEEEETTTTEEEEEC---TTTCBEEEEE
T ss_pred Ee-C-------CEEEEEECCCCeEEEEE---CCCCCEEEEE
Confidence 65 2 44555555788999999 7788888776
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.39 E-value=0.16 Score=60.20 Aligned_cols=198 Identities=15% Similarity=0.108 Sum_probs=115.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCC--cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2272 ASISALQFDHYGHRFASAALDG--TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DG--tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
.-...+.|+. +.++.+.+.+| .|+.+|+++++.....+ +..+.-.. .+...++.+.... -.++.+.++
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~------l~~~~fge-Gi~~~~~~ly~lt--w~~~~v~v~ 90 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE------VPPPYFGA-GIVAWRDRLIQLT--WRNHEGFVY 90 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE------CCTTCCEE-EEEEETTEEEEEE--SSSSEEEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe------CCCCccee-EEEEeCCEEEEEE--eeCCEEEEE
Confidence 5577899986 66666767654 99999999987543221 22221111 1222344444443 278999999
Q ss_pred ECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccc
Q 000054 2350 DTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHA 2429 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~va 2429 (2548)
|..+ .+.+..+..-.. -+.++. +. +.+++| ..++.|.++| ..+.+.+..+...
T Consensus 91 D~~t--l~~~~ti~~~~~-Gwglt~--dg------~~L~vS-dgs~~l~~iD---p~t~~~~~~I~V~------------ 143 (243)
T 3mbr_X 91 DLAT--LTPRARFRYPGE-GWALTS--DD------SHLYMS-DGTAVIRKLD---PDTLQQVGSIKVT------------ 143 (243)
T ss_dssp ETTT--TEEEEEEECSSC-CCEEEE--CS------SCEEEE-CSSSEEEEEC---TTTCCEEEEEECE------------
T ss_pred ECCc--CcEEEEEeCCCC-ceEEee--CC------CEEEEE-CCCCeEEEEe---CCCCeEEEEEEEc------------
Confidence 9976 666777664322 245553 31 335555 4588999999 6666666655100
Q ss_pred cCCCCCCccCCCCCceEEEcccC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccC
Q 000054 2430 DAQTGSGSKPGDQNGMLWYIPKA-HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRG 2508 (2548)
Q Consensus 2430 fSpdGk~v~s~D~sv~Iwdi~~g-H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~G 2508 (2548)
+ .+ --..++.+.+. +|+.++..-.+..|.+.|.++|+.+..+.-.-.. +....
T Consensus 144 ------------------~--~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~-----~~~~~ 197 (243)
T 3mbr_X 144 ------------------A--GGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALV-----PDADA 197 (243)
T ss_dssp ------------------E--TTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGS-----TTTTS
T ss_pred ------------------c--CCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCc-----ccccc
Confidence 0 00 11244566665 6766655556789999999999999988421100 00000
Q ss_pred CCCceeecEEEEEEcCCe---EEEEEC
Q 000054 2509 FGGVVRAGVTDIQVVSRG---FLSCGG 2532 (2548)
Q Consensus 2509 H~~~V~a~VtsLafSPdG---LaSGS~ 2532 (2548)
...........||++|++ ++||-.
T Consensus 198 ~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 198 LTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp CCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred ccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 000111345778999987 566643
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.36 E-value=0.061 Score=64.48 Aligned_cols=197 Identities=14% Similarity=0.105 Sum_probs=117.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEEC
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl 2351 (2548)
.-...+.|+ ++.++.+.+.+|.|+++|+++++..... +....-. ..+.++++.+.... -.++.+.++|.
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-------l~~~~Fg-eGit~~g~~Ly~lt--w~~~~v~V~D~ 123 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-------RLGNIFA-EGLASDGERLYQLT--WTEGLLFTWSG 123 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-------ECTTCCE-EEEEECSSCEEEEE--SSSCEEEEEET
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-------CCCCcce-eEEEEeCCEEEEEE--ccCCEEEEEEC
Confidence 446788887 4677778888899999999998644321 2221111 11233444444433 27899999999
Q ss_pred CCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000054 2352 LAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2352 ~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
.+ .+.+..+..- ..-+.+++ + +..|+.+..++.|.++| ..+.+.+..+....
T Consensus 124 ~T--l~~~~ti~~~-~eGwGLt~--D-------g~~L~vSdGs~~l~~iD---p~T~~v~~~I~V~~------------- 175 (268)
T 3nok_A 124 MP--PQRERTTRYS-GEGWGLCY--W-------NGKLVRSDGGTMLTFHE---PDGFALVGAVQVKL------------- 175 (268)
T ss_dssp TT--TEEEEEEECS-SCCCCEEE--E-------TTEEEEECSSSEEEEEC---TTTCCEEEEEECEE-------------
T ss_pred Cc--CcEEEEEeCC-CceeEEec--C-------CCEEEEECCCCEEEEEc---CCCCeEEEEEEeCC-------------
Confidence 76 6666666642 22244443 3 34666666689999999 66677666651000
Q ss_pred CCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCC
Q 000054 2432 QTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGG 2511 (2548)
Q Consensus 2432 pdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~ 2511 (2548)
+ ...-..++.+.|. +|++.+..-.+..|.+-|.++|+.+..+.-.-..... +......+
T Consensus 176 -~-----------------g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~--~~~~~~~~ 234 (268)
T 3nok_A 176 -R-----------------GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAV--AGQVTNPE 234 (268)
T ss_dssp -T-----------------TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHH--TTTCCCTT
T ss_pred -C-----------------CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccc--cccccCcC
Confidence 0 0011245677776 7766655556889999999999999988421000000 00001112
Q ss_pred ceeecEEEEEEcCCe---EEEEE
Q 000054 2512 VVRAGVTDIQVVSRG---FLSCG 2531 (2548)
Q Consensus 2512 ~V~a~VtsLafSPdG---LaSGS 2531 (2548)
.....||++|++ ++||-
T Consensus 235 ---~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 235 ---AVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ---CCEEEEEECTTTCCEEEEET
T ss_pred ---CceEEEEEcCCCCEEEEeCC
Confidence 345778999987 55663
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.22 E-value=0.32 Score=64.30 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=43.3
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC------CCcEEEEEcCCCc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL------DGTVCTWQLEVGG 2304 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~------DGtVrVWDl~tgk 2304 (2548)
+..+++++.|+.+..+|..+|+.+-.+.... +..........+ + .+..+++++. +|.|..+|.++|+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~--v----~~g~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCD-PKVGSTLTQAPF--V----AKDTVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCE--E----ETTEEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCC-CCccceeccCCE--E----ECCEEEEEecCCccCCCCEEEEEECCCCc
Confidence 4567788889999999999999887765311 100000011111 1 1345666654 7999999999887
Q ss_pred cc
Q 000054 2305 RS 2306 (2548)
Q Consensus 2305 ~i 2306 (2548)
..
T Consensus 188 ~~ 189 (571)
T 2ad6_A 188 LK 189 (571)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.06 E-value=0.76 Score=55.10 Aligned_cols=202 Identities=12% Similarity=0.013 Sum_probs=110.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC--cEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG--TVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG--tVrVWD 2299 (2548)
...++++++|+++++-..++.|..||.... ....+.. .+....+++.++|+.+++..... .|..+|
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-----------~~~p~gia~~~dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-----------EGKVSGLAFTSNGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-----------SSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-----------CCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence 467889999998877778899999987653 3332221 14588999999999665544332 466667
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce--------eeeccCCCeEE
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA--------SITCHEGGARS 2371 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~--------sl~gHs~~VtS 2371 (2548)
..+++...+.... -......+ +..+++..+++ . +.++.|..+|......+... .....-...+.
T Consensus 102 ~~~g~~~~~~~~~----~~~~~~g~-~~~~~~~~~v~-d--~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~png 173 (306)
T 2p4o_A 102 KSDGTVETLLTLP----DAIFLNGI-TPLSDTQYLTA-D--SYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 173 (306)
T ss_dssp CTTSCEEEEEECT----TCSCEEEE-EESSSSEEEEE-E--TTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred CCCCeEEEEEeCC----CccccCcc-cccCCCcEEEE-E--CCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCC
Confidence 6666422111000 00011112 23344444444 3 25788888887531011100 00011123445
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
+ +++. +.+.++-...+.|..+|+.. .++. . ...++..
T Consensus 174 i--s~dg------~~lyv~d~~~~~I~~~~~~~--~g~~-~------------------------------~~~~~~~-- 210 (306)
T 2p4o_A 174 L--KRFG------NFLYVSNTEKMLLLRIPVDS--TDKP-G------------------------------EPEIFVE-- 210 (306)
T ss_dssp E--EEET------TEEEEEETTTTEEEEEEBCT--TSCB-C------------------------------CCEEEEE--
T ss_pred c--CcCC------CEEEEEeCCCCEEEEEEeCC--CCCC-C------------------------------ccEEEec--
Confidence 5 5552 33556666778898888431 1111 0 0011110
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV 2489 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell 2489 (2548)
......++++++|+++++....+.|.++|.. |+..
T Consensus 211 --~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 211 --QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTT 245 (306)
T ss_dssp --SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEE
T ss_pred --cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEE
Confidence 0233568899999988777778899999975 6653
No 258
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.02 E-value=0.45 Score=57.25 Aligned_cols=202 Identities=10% Similarity=0.052 Sum_probs=110.5
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeC--------
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAAL-------- 2291 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~-------- 2291 (2548)
...+++.+ +|+++ .+...+.|..+|..++.. ..+..... .........+++.+ +|+..++-..
T Consensus 82 p~gi~~~~~~g~l~-v~d~~~~i~~~d~~~g~~-~~~~~~~~-----~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 82 TYDISYNLQNNQLY-IVDCYYHLSVVGSEGGHA-TQLATSVD-----GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV 154 (322)
T ss_dssp EEEEEEETTTTEEE-EEETTTEEEEECTTCEEC-EEEESEET-----TEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred CceEEEcCCCCcEE-EEECCCCEEEEeCCCCEE-EEecccCC-----CCcccccceEEEecCCCEEEEECCccccccccc
Confidence 36777887 56544 444445588888765532 22211000 01124578899999 9987666432
Q ss_pred ---------CCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee
Q 000054 2292 ---------DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI 2362 (2548)
Q Consensus 2292 ---------DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl 2362 (2548)
+|.|..+|..+++..... ..+ ..... .+++++|+.+..+. +.++.|..+|+..........+
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~~~~~~~-----~~~-~~p~g-ia~~~dg~~lyv~d--~~~~~I~~~~~~~~~~~~~~~~ 225 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTKETTLLL-----KEL-HVPGG-AEVSADSSFVLVAE--FLSHQIVKYWLEGPKKGTAEVL 225 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTTEEEEEE-----EEE-SCCCE-EEECTTSSEEEEEE--GGGTEEEEEESSSTTTTCEEEE
T ss_pred ceehcccCCCceEEEEeCCCCEEEEec-----cCC-ccCcc-eEECCCCCEEEEEe--CCCCeEEEEECCCCcCCccceE
Confidence 367888887655321110 001 11222 35889998776664 2568899999874211112222
Q ss_pred eccCCCeEEEEEccCCCCCCCCCCEEEEEeC----------CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCC
Q 000054 2363 TCHEGGARSISVFDNDLGSGSVSPLIVTGGK----------GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ 2432 (2548)
Q Consensus 2363 ~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~----------DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp 2432 (2548)
....+ ...+++.++ +.+.++... .+.|..+| . .++.+..+..
T Consensus 226 ~~~~g-P~gi~~d~~-------G~l~va~~~~~~~~~~~~~~~~v~~~d---~-~G~~~~~~~~---------------- 277 (322)
T 2fp8_A 226 VKIPN-PGNIKRNAD-------GHFWVSSSEELDGNMHGRVDPKGIKFD---E-FGNILEVIPL---------------- 277 (322)
T ss_dssp EECSS-EEEEEECTT-------SCEEEEEEEETTSSTTSCEEEEEEEEC---T-TSCEEEEEEC----------------
T ss_pred EeCCC-CCCeEECCC-------CCEEEEecCcccccccCCCccEEEEEC---C-CCCEEEEEEC----------------
Confidence 21223 777888777 566666544 35677776 2 2444444311
Q ss_pred CCCCccCCCCCceEEEcccCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000054 2433 TGSGSKPGDQNGMLWYIPKAH-LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2433 dGk~v~s~D~sv~Iwdi~~gH-~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
..+. -..++++++ .+++++++....+.|.++++..
T Consensus 278 -----------------~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 278 -----------------PPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp -----------------CTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred -----------------CCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 0111 223455655 3666666666778888888753
No 259
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.99 E-value=1.5 Score=59.66 Aligned_cols=285 Identities=9% Similarity=0.046 Sum_probs=151.8
Q ss_pred EEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEe----ccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000054 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYG----VLPAANVPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~----~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVr 2296 (2548)
.+.++...++|.+. .|+..+-|.++|..++....... ...............|.++...++|. |-.|..++-|.
T Consensus 259 ~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~ 336 (781)
T 3v9f_A 259 YIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGIN 336 (781)
T ss_dssp CEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEE
T ss_pred eEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEE
Confidence 36888877777644 45564568888987665322110 00000001122346799999999887 55677777788
Q ss_pred EEEcCCCcccccccCcc-ceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee----eccCCCe
Q 000054 2297 TWQLEVGGRSNVRPMES-CLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI----TCHEGGA 2369 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s-~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl----~gHs~~V 2369 (2548)
.++..++.......... ..........|.+ ...+|.+.+.. .++-|..+|.... ....+ ......|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt----~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~v 409 (781)
T 3v9f_A 337 FISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGT----DGGGINVFENGKR---VAIYNKENRELLSNSV 409 (781)
T ss_dssp EECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEE----BSSCEEEEETTEE---EEECC-----CCCSBE
T ss_pred EeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEe----CCCcEEEEECCCC---eEEEccCCCCCCCcce
Confidence 88876553221110000 0000112234554 45566665543 4667888987531 11111 1234578
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEE
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWY 2448 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwd 2448 (2548)
.++...++ + .|..|+.++-+..+| ..+++.. .+... .........+...++|.+ +++. +.+..++
T Consensus 410 ~~i~~d~~-------g-~lWigt~~~Gl~~~~---~~~~~~~-~~~~~-~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~ 475 (781)
T 3v9f_A 410 LCSLKDSE-------G-NLWFGTYLGNISYYN---TRLKKFQ-IIELE-KNELLDVRVFYEDKNKKIWIGTH-AGVFVID 475 (781)
T ss_dssp EEEEECTT-------S-CEEEEETTEEEEEEC---SSSCEEE-ECCST-TTCCCCEEEEEECTTSEEEEEET-TEEEEEE
T ss_pred EEEEECCC-------C-CEEEEeccCCEEEEc---CCCCcEE-EeccC-CCCCCeEEEEEECCCCCEEEEEC-CceEEEe
Confidence 88887665 3 455677777789998 3344332 22111 111112233444555555 4444 3445554
Q ss_pred ccc--------CC-----CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceee
Q 000054 2449 IPK--------AH-----LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2449 i~~--------gH-----~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
... .. ...|.++..+++|.+.+....+| |..+|..+++.. .+.. . .+- ...
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~---~--------~~l---~~~ 539 (781)
T 3v9f_A 476 LASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQ---Y--------EGF---CSN 539 (781)
T ss_dssp SSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECT---T--------TTC---SCS
T ss_pred CCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccC---C--------CCC---CCC
Confidence 211 11 35799999999998776543345 777898766543 3310 0 011 113
Q ss_pred cEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2516 GVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2516 ~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
.|.++..+++| |-.|+.+|.|..||..++
T Consensus 540 ~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 540 TINQIYRSSKGQMWLATGEGLVCFPSARNF 569 (781)
T ss_dssp CEEEEEECTTSCEEEEETTEEEEESCTTTC
T ss_pred eeEEEEECCCCCEEEEECCCceEEECCCCC
Confidence 46777888888 666666666577777654
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.97 E-value=1.1 Score=59.56 Aligned_cols=73 Identities=10% Similarity=0.057 Sum_probs=43.3
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEc-cCCC-EEEEEe------CCCcEEEEEcCC
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFD-HYGH-RFASAA------LDGTVCTWQLEV 2302 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFS-PdG~-~LaSGS------~DGtVrVWDl~t 2302 (2548)
+..++.++.|+.|.-+|..+|+.+-.+....... .......++ +.=. .+|+ .+++++ .+|.|..+|.++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~-~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t 193 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGA-GYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT 193 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGG-TCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCc-CcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence 4567778899999999999999887765321000 000011111 1101 1233 566654 378999999998
Q ss_pred Cccc
Q 000054 2303 GGRS 2306 (2548)
Q Consensus 2303 gk~i 2306 (2548)
|+..
T Consensus 194 G~~~ 197 (582)
T 1flg_A 194 GEEI 197 (582)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 8754
No 261
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=95.90 E-value=2.2 Score=50.85 Aligned_cols=212 Identities=7% Similarity=0.025 Sum_probs=124.0
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+..++|+|++. ++++...++.|...|.. ++.+..+.. .+ ....-.|++.+++.++++.-.++.+.++++
T Consensus 29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-~g--------~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-DF--------VKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-SS--------CSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred cceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-CC--------CCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 68899999766 45567888999999987 777776632 11 145788899988887777667789999988
Q ss_pred CCCcccccccCcc--ceec-cCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-------ccCCCeE
Q 000054 2301 EVGGRSNVRPMES--CLCF-SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-------CHEGGAR 2370 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s--~~t~-~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-------gHs~~Vt 2370 (2548)
.....+....... .... ....-.-.+++|.++.+.++... ....|..|+-.. ....+..+. .+...+.
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~-~p~~i~~~~g~~-~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK-NPIEVYKVNGLL-SSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES-SSEEEEEEESTT-CSSCCEEEECHHHHHTCCSSCCC
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc-CCceEEEEcccc-cCCceeeecchhhccccccCCce
Confidence 7554211100000 0000 01111334688888766665411 222455555111 111222221 1334678
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
+++++|.. +.+++.....+.+.++|.. |+.+..+........ +
T Consensus 177 ~l~~dp~t------g~lliLS~~s~~L~~~d~~----g~~~~~~~L~~g~~~---------------------------l 219 (255)
T 3qqz_A 177 GAEFNQQK------NTLLVLSHESRALQEVTLV----GEVIGEMSLTKGSRG---------------------------L 219 (255)
T ss_dssp EEEEETTT------TEEEEEETTTTEEEEECTT----CCEEEEEECSTTGGG---------------------------C
T ss_pred eEEEcCCC------CeEEEEECCCCeEEEEcCC----CCEEEEEEcCCccCC---------------------------c
Confidence 99999985 7788888889999999942 454433311000000 0
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDA 2483 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl 2483 (2548)
..--..-..|+|+++|++.++ ++.+.+.++.-
T Consensus 220 ~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 220 SHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp SSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred ccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 001135578999999986655 67666666653
No 262
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=95.85 E-value=1.2 Score=53.27 Aligned_cols=209 Identities=8% Similarity=0.053 Sum_probs=116.6
Q ss_pred CCeEEEEEccCCCEE-EEEeCCCcEEEEEcCCCcccccccCccceeccCC--cccEEEEcCCCCEEEEEeccCCCCeEEE
Q 000054 2272 ASISALQFDHYGHRF-ASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSH--AMDVSYITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~L-aSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH--~~~V~afSpdGslLATgG~SS~DGtVrI 2348 (2548)
+.+..++|+|+++.| ++...++.|...|.. ++.....+ +.+. ...| ++.+++.++++.- .++.+.+
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~------l~g~~D~EGI-a~~~~g~~~vs~E---~~~~l~~ 95 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP------LDFVKDLETI-EYIGDNQFVISDE---RDYAIYV 95 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE------CSSCSSEEEE-EECSTTEEEEEET---TTTEEEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe------cCCCCChHHe-EEeCCCEEEEEEC---CCCcEEE
Confidence 679999999976655 457778888888887 54332211 2221 2233 3556776655542 5678888
Q ss_pred EECCCCCC-Ccceeee------ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC
Q 000054 2349 WDTLAPPT-SSRASIT------CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS 2421 (2548)
Q Consensus 2349 WDl~t~~~-k~v~sl~------gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s 2421 (2548)
+++..... ..+.... ....+...++|.|. +..|.++...+...+|.++.......+
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~-------~~~L~va~E~~p~~i~~~~g~~~~~~l---------- 158 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ-------DHTFWFFKEKNPIEVYKVNGLLSSNEL---------- 158 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT-------TTEEEEEEESSSEEEEEEESTTCSSCC----------
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCC-------CCEEEEEECcCCceEEEEcccccCCce----------
Confidence 88764321 1112221 23456789999998 445555555555566653211111111
Q ss_pred CccccccccCCCCCCccCCCCCceEEEc----ccCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000054 2422 SINTCAHADAQTGSGSKPGDQNGMLWYI----PKAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2422 ~~~~~~vafSpdGk~v~s~D~sv~Iwdi----~~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
.+.+. ...+...+.+++++|.. ++++....+..|.++|.. |+.+..+.-..
T Consensus 159 -----------------------~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~ 214 (255)
T 3qqz_A 159 -----------------------HISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTK 214 (255)
T ss_dssp -----------------------EEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECST
T ss_pred -----------------------eeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCC
Confidence 11100 01123356899999965 455555567789999965 66776663111
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEEC
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL 2541 (2548)
.+.|-...+ ...-.|+|+++| |...+..+.+..+.-
T Consensus 215 --------g~~~l~~~~-~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 215 --------GSRGLSHNI-KQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp --------TGGGCSSCC-CSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred --------ccCCccccc-CCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 011111112 123567999999 666677776655543
No 263
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.78 E-value=0.3 Score=64.57 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=25.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2464 PNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2464 PdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
..+..++.++.||.|+.||.++|+.+.+++
T Consensus 473 t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 473 TKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 356677789999999999999999998873
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.76 E-value=0.44 Score=63.42 Aligned_cols=159 Identities=8% Similarity=0.024 Sum_probs=87.3
Q ss_pred EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe------CCCcEEEEEcCCCccc
Q 000054 2233 FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA------LDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2233 ~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS------~DGtVrVWDl~tgk~i 2306 (2548)
+++.++.|+.|.-+|..+|+.+-...... +..........+ + .++ .+++++ .+|.|..+|.++|+..
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~-~~~~~~~~ssP~--v---~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSD-IKVGSTLTIAPY--V---VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCE--E---ETT-EEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCC-CCccceeecCCE--E---ECC-EEEEEecccccCCCCeEEEEECCCCcEE
Confidence 37788899999999999999877654311 000000001111 1 133 455554 3899999999998754
Q ss_pred ccccCccce------------------------eccC-----CcccE---EEEcCCCCEEEEEeccCCC-----------
Q 000054 2307 NVRPMESCL------------------------CFSS-----HAMDV---SYITSSGSVIAAAGHSSNG----------- 2343 (2548)
Q Consensus 2307 ~i~p~~s~~------------------------t~~g-----H~~~V---~afSpdGslLATgG~SS~D----------- 2343 (2548)
-........ +..+ -...+ .++.++..+++.+. .+
T Consensus 196 W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~---g~~~p~~~~~r~g 272 (599)
T 1w6s_A 196 WRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT---GNPAPWNETMRPG 272 (599)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC---CCCSCSCGGGSCS
T ss_pred EEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC---CCCccccCcccCC
Confidence 211110000 0000 00011 13556666666653 22
Q ss_pred -----CeEEEEECCCCCCCcceeeec--cC--------CCeEEEEEc-cCCCCCCCCC---CEEEEEeCCCcEEEEeCCc
Q 000054 2344 -----INVVVWDTLAPPTSSRASITC--HE--------GGARSISVF-DNDLGSGSVS---PLIVTGGKGGDVGIHDFRY 2404 (2548)
Q Consensus 2344 -----GtVrIWDl~t~~~k~v~sl~g--Hs--------~~VtSLafs-P~dlg~gs~g---~lLVSGS~DGtVrLWDLR~ 2404 (2548)
+.|..+|.++ ++.+-.++. |. ..+. +... .+ + ..++.++.+|.+.++|
T Consensus 273 d~~y~~sv~Ald~~T--G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~-------G~~~~~v~~~~~~G~l~~lD--- 339 (599)
T 1w6s_A 273 DNKWTMTIFGRDADT--GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKD-------GKARKLLTHPDRNGIVYTLD--- 339 (599)
T ss_dssp CCTTSSEEEEEETTT--CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTT-------SCEEEEEEEECTTSEEEEEE---
T ss_pred CccccceEEEEeCCC--CceeeEeecCCCccccccCCCccEE-EeccccC-------CcEEEEEEEECCCcEEEEEE---
Confidence 4788889876 555544442 21 1111 1111 22 4 4678889999999999
Q ss_pred cccCceeeee
Q 000054 2405 IATGKTKKHK 2414 (2548)
Q Consensus 2405 l~TGk~l~tl 2414 (2548)
..+|+.+...
T Consensus 340 ~~tG~~lw~~ 349 (599)
T 1w6s_A 340 RTDGALVSAN 349 (599)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCCEeecc
Confidence 6678887665
No 265
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.70 E-value=0.17 Score=67.68 Aligned_cols=72 Identities=8% Similarity=0.031 Sum_probs=47.6
Q ss_pred EEEEcCCCCEEEEEEC-CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CC-----CcEE
Q 000054 2224 AFSSHPLRPFFLVGSS-NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LD-----GTVC 2296 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS~-DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~D-----GtVr 2296 (2548)
++++.++|.+++.|+. ++.+.+||..+++-... ...+. + ..-.+++..++|+.++.|+ .+ ..+.
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~~~---~-----R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e 317 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQV---A-----RGYQSSATMSDGRVFTIGGSWSGGVFEKNGE 317 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-CCCSS---C-----CSSCEEEECTTSCEEEECCCCCSSSCCCCEE
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeEC-CCCCc---c-----ccccceEEecCCeEEEEeCcccCCcccccce
Confidence 4566689999999884 55899999887653322 11111 0 1123455567899999988 44 4789
Q ss_pred EEEcCCCc
Q 000054 2297 TWQLEVGG 2304 (2548)
Q Consensus 2297 VWDl~tgk 2304 (2548)
+||..++.
T Consensus 318 ~yd~~t~~ 325 (656)
T 1k3i_A 318 VYSPSSKT 325 (656)
T ss_dssp EEETTTTE
T ss_pred EeCCCCCc
Confidence 99998764
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.57 E-value=3.1 Score=56.58 Aligned_cols=283 Identities=12% Similarity=0.061 Sum_probs=149.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++...++|.+.+. +.+ -+.+||..+++... +...... +.......|.++...++|. +..|+..+-|.++|..
T Consensus 213 i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~-~~~~~~~--~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 213 VRCIYKDTNGNIWIG-TSK-GLALFNANTETFTN-FHNNPGN--IHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ 286 (781)
T ss_dssp EEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC--------------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred eeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEE-EEcCCCc--cccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence 677887788876654 444 58899987665332 1110000 0011236799999988887 4556664567788887
Q ss_pred CCccccccc--C----ccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee----------
Q 000054 2302 VGGRSNVRP--M----ESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT---------- 2363 (2548)
Q Consensus 2302 tgk~i~i~p--~----~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~---------- 2363 (2548)
++....... + .......-....|.+ ...+|.+-+.. .++-|..++.... ....+.
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt----~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~~ 359 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGT----WGGGINFISNAPP---TFHTWSYSPTQMNESS 359 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEE----BSSCEEEECSSCC---SCEEEC----CCCSSC
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEe----cCCeEEEeCCCCC---cceeeccCccccccCC
Confidence 654221110 0 000001112334554 45667665543 5678888987642 222221
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCC
Q 000054 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQ 2442 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~ 2442 (2548)
.....|.++...+++ .|..|+.++-|..+|. .++.. ..+.............+...++|.+ ++..++
T Consensus 360 l~~~~v~~i~~d~~g--------~lWigt~~~Gl~~~~~---~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~ 427 (781)
T 3v9f_A 360 LSNKVVSSVCDDGQG--------KLWIGTDGGGINVFEN---GKRVA-IYNKENRELLSNSVLCSLKDSEGNLWFGTYLG 427 (781)
T ss_dssp CSSSCEEEEEECTTS--------CEEEEEBSSCEEEEET---TEEEE-ECC-----CCCSBEEEEEECTTSCEEEEETTE
T ss_pred CCCcceEEEEEcCCC--------CEEEEeCCCcEEEEEC---CCCeE-EEccCCCCCCCcceEEEEECCCCCEEEEeccC
Confidence 123568888876652 5667777777999994 22222 2211111111112223344455655 555444
Q ss_pred CceEEEccc----------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCc
Q 000054 2443 NGMLWYIPK----------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGV 2512 (2548)
Q Consensus 2443 sv~Iwdi~~----------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~ 2512 (2548)
.+..++... .....|.++..+++|.+.+. +. +-|.++|..+++...... . ... ..
T Consensus 428 Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~-~-----------~~~-~~ 492 (781)
T 3v9f_A 428 NISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYD-T-----------SNS-QL 492 (781)
T ss_dssp EEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEEC-T-----------TTS-SC
T ss_pred CEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEeccc-C-----------ccc-cc
Confidence 444444211 13457999999888876654 44 458889988766433210 0 000 00
Q ss_pred eeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2513 VRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2513 V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
....|.++..+++| |-.|+.++-+..|+..++
T Consensus 493 ~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 493 LENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQ 525 (781)
T ss_dssp SCSCEEEEEECTTCCEEEEESSSCEEEECTTCC
T ss_pred ccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCC
Confidence 01346777888888 767776555777776654
No 267
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.50 E-value=5 Score=50.16 Aligned_cols=228 Identities=11% Similarity=-0.015 Sum_probs=124.9
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEEcCCCccccccc
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWDl~tgk~i~i~p 2310 (2548)
.+|+.+. ...|+..++..+........ ...+..++|++.+..|+.+ ...+.|..++.+.+....+..
T Consensus 88 ~~l~~~~-~~~I~~i~~~~~~~~~~~~~-----------~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 88 PVLLFAN-RIDIRQVLPHRSEYTLLLNN-----------LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp CEEEEEC-BSCEEEECTTSCCCEEEECS-----------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred ceeEeec-CccceeeccCCCcEEEEecC-----------CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 3444433 35688888776554333321 2568899999865555544 456789899987653211110
Q ss_pred CccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEE
Q 000054 2311 MESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVT 2390 (2548)
Q Consensus 2311 ~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVS 2390 (2548)
. -...... .++.+.+..|+.+. ...+.|.+.++.. ......+.........+++.|.+ +.+.++
T Consensus 156 ~-----~~~~p~g-lavd~~~g~lY~~d--~~~~~I~~~~~dg--~~~~~l~~~~l~~P~giavdp~~------g~ly~t 219 (386)
T 3v65_B 156 T-----GLESPGG-LAVDWVHDKLYWTD--SGTSRIEVANLDG--AHRKVLLWQSLEKPRAIALHPME------GTIYWT 219 (386)
T ss_dssp S-----SCSCCCC-EEEETTTTEEEEEE--TTTTEEEECBTTS--CSCEEEECSSCSCEEEEEEETTT------TEEEEE
T ss_pred C-----CCCCccE-EEEEeCCCeEEEEc--CCCCeEEEEeCCC--CceEEeecCCCCCCcEEEEEcCC------CeEEEe
Confidence 0 0011122 24666555555443 3567888888753 22222222333567889999874 555555
Q ss_pred EeCC-CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEE
Q 000054 2391 GGKG-GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLF 2469 (2548)
Q Consensus 2391 GS~D-GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~L 2469 (2548)
-..+ +.|...|+. |.....+ . ...-..-..|+++|++..|
T Consensus 220 d~~~~~~I~r~~~d----G~~~~~~--------------------------------~---~~~~~~PnGlavd~~~~~l 260 (386)
T 3v65_B 220 DWGNTPRIEASSMD----GSGRRII--------------------------------A---DTHLFWPNGLTIDYAGRRM 260 (386)
T ss_dssp ECSSSCEEEEEETT----SCSCEEE--------------------------------E---CSSCSCEEEEEEEGGGTEE
T ss_pred ccCCCCEEEEEeCC----CCCcEEE--------------------------------E---ECCCCCeeeEEEeCCCCEE
Confidence 5444 677777742 1211111 0 1122346789999876655
Q ss_pred EEE-eCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2470 LTG-SKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2470 aSG-S~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
+.+ +..+.|..+|+........+. .+. .....+++..+. +++-...+.|..++..++
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~~~~~~-------------~~~-----~~P~giav~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 261 YWVDAKHHVIERANLDGSHRKAVIS-------------QGL-----PHPFAITVFEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EEEETTTTEEEEECTTSCSCEEEEC-------------SSC-----SSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EEEECCCCEEEEEeCCCCeeEEEEE-------------CCC-----CCceEEEEECCEEEEeeCCCCeEEEEECCCC
Confidence 555 456789999986433222120 010 112455675555 556667778888874443
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.21 E-value=2.1 Score=51.27 Aligned_cols=160 Identities=6% Similarity=-0.041 Sum_probs=86.1
Q ss_pred EEEEEEcCCCCEEEEEECCC--eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DG--sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
...+++.++|+++++....+ .|..+|..+++...... .+. ......++..+++..+++-..+|.|.++|
T Consensus 74 p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~-~~~--------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 74 VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT-LPD--------AIFLNGITPLSDTQYLTADSYRGAIWLID 144 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE-CTT--------CSCEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred ceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEe-CCC--------ccccCcccccCCCcEEEEECCCCeEEEEe
Confidence 47788899999777654432 46667777776543322 111 12234555555555455544688888888
Q ss_pred cCCCc-ccc-cccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCCeEEEEEc
Q 000054 2300 LEVGG-RSN-VRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk-~i~-i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~VtSLafs 2375 (2548)
..++. ... ..+................++++++.++.+. +..+.|..+|+... ++ ....+. .......+++.
T Consensus 145 ~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d--~~~~~I~~~~~~~~-g~~~~~~~~~-~~~~P~gi~vd 220 (306)
T 2p4o_A 145 VVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSN--TEKMLLLRIPVDST-DKPGEPEIFV-EQTNIDDFAFD 220 (306)
T ss_dssp TTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEE--TTTTEEEEEEBCTT-SCBCCCEEEE-ESCCCSSEEEB
T ss_pred CCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEe--CCCCEEEEEEeCCC-CCCCccEEEe-ccCCCCCeEEC
Confidence 76532 110 0000000000011111122477888777765 46789999998641 11 112221 11334556777
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEe
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHD 2401 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWD 2401 (2548)
++ +.+.++....+.|.++|
T Consensus 221 ~d-------G~l~va~~~~~~V~~~~ 239 (306)
T 2p4o_A 221 VE-------GNLYGATHIYNSVVRIA 239 (306)
T ss_dssp TT-------CCEEEECBTTCCEEEEC
T ss_pred CC-------CCEEEEeCCCCeEEEEC
Confidence 66 66777766778888888
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.05 E-value=4.4 Score=51.48 Aligned_cols=151 Identities=11% Similarity=0.085 Sum_probs=88.5
Q ss_pred EEEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-C----cEE
Q 000054 2223 RAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-G----TVC 2296 (2548)
Q Consensus 2223 ~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-G----tVr 2296 (2548)
..++++| ++..|.++...+.|+.+|..++....... .......|+|+++|++|+.+... + .+.
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-----------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~ 208 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-----------GLSKVRTICWTHEADSMIITNDQNNNDRPNNY 208 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-----------CCSCEEEEEECTTSSEEEEEECCSCTTSEEEE
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-----------CCCCcceEEEeCCCCEEEEEeCCCCcccceEE
Confidence 5667778 35555555554889999988765443321 12568899999999966666542 2 233
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEEEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEEEEE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARSISV 2374 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtSLaf 2374 (2548)
+.+. .+..... .... ...|...+ +++| +|.++++-. .++.|..+|... ........ +.......+++
T Consensus 209 ~~~~-~g~~~~~---~~l~-~~~~p~gi-avdp~~g~lyv~d~---~~~~V~~~~~~~--~~~~~~~~~~~~~~P~gia~ 277 (430)
T 3tc9_A 209 ILTR-ESGFKVI---TELT-KGQNCNGA-ETHPINGELYFNSW---NAGQVFRYDFTT--QETTPLFTIQDSGWEFHIQF 277 (430)
T ss_dssp EEEG-GGTSCSE---EEEE-ECSSCCCE-EECTTTCCEEEEET---TTTEEEEEETTT--TEEEEEEECSSSSCCEEEEE
T ss_pred EEeC-CCceeee---eeec-cCCCceEE-EEeCCCCEEEEEEC---CCCEEEEEECCC--CcEEEEEEcCCCCcceeEEE
Confidence 3333 2321100 0111 12233333 4788 677666542 678899999864 22111111 12245788999
Q ss_pred ccCCCCCCCCCC-EEEEEeCCCcEEEEeC
Q 000054 2375 FDNDLGSGSVSP-LIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2375 sP~dlg~gs~g~-lLVSGS~DGtVrLWDL 2402 (2548)
+|+ ++ ++++-...+.|..+|.
T Consensus 278 ~pd-------G~~lyv~d~~~~~I~~~~~ 299 (430)
T 3tc9_A 278 HPS-------GNYAYIVVVNQHYILRSDY 299 (430)
T ss_dssp CTT-------SSEEEEEETTTTEEEEEEE
T ss_pred cCC-------CCEEEEEECCCCEEEEEeC
Confidence 998 66 5666667889999884
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.01 E-value=0.93 Score=61.76 Aligned_cols=114 Identities=7% Similarity=-0.083 Sum_probs=67.0
Q ss_pred CeEEEEEc-cCCCEEEEEeC-CC----cEEEEEcCCC-cccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC--
Q 000054 2273 SISALQFD-HYGHRFASAAL-DG----TVCTWQLEVG-GRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG-- 2343 (2548)
Q Consensus 2273 ~VtsVaFS-PdG~~LaSGS~-DG----tVrVWDl~tg-k~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D-- 2343 (2548)
.+...+|+ |||++++.+.. +| +|.++|+.++ +... . .+...... ..|+|||+.|+..... ..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---~----~~~~~~~~-~~WspDg~~l~y~~~d-~~~~ 245 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---D----KVSGTNGE-IVWGPDHTSLFYVTKD-ETLR 245 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---C----CEEEECSC-CEECSSTTEEEEEEEC-TTCC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---c----cccCceee-EEEecCCCEEEEEEEC-CCCC
Confidence 67889999 99998885533 33 5999999987 5211 0 01111111 2489999877766421 11
Q ss_pred -CeEEEEECCCCCCCcceeee-ccCCCeEEEEEccCCCCCCCCCCEEEEEeC---CCcEEEEeC
Q 000054 2344 -INVVVWDTLAPPTSSRASIT-CHEGGARSISVFDNDLGSGSVSPLIVTGGK---GGDVGIHDF 2402 (2548)
Q Consensus 2344 -GtVrIWDl~t~~~k~v~sl~-gHs~~VtSLafsP~dlg~gs~g~lLVSGS~---DGtVrLWDL 2402 (2548)
..|..+++.++....+..+. .+......+.|+|+ ++.|+..+. ...|.++|+
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD-------g~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD-------TNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT-------SSEEEEEEECSSCEEEEEEES
T ss_pred CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCC-------CCEEEEEecCCCCceEEEEEC
Confidence 35778888653212223332 22345677889998 666665442 335667774
No 271
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=94.98 E-value=9.8 Score=46.79 Aligned_cols=227 Identities=11% Similarity=-0.028 Sum_probs=124.2
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEEcCCCccccccc
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWDl~tgk~i~i~p 2310 (2548)
.+|+.+. ...|+..+.........+. ....+..++|++.+..|+.+ ...+.|..++.+.+....+.
T Consensus 45 ~~ll~~~-~~~I~~i~~~g~~~~~~~~-----------~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~- 111 (349)
T 3v64_C 45 PVLLFAN-RIDIRQVLPHRSEYTLLLN-----------NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV- 111 (349)
T ss_dssp CEEEEEC-BSCEEEECTTSCCEEEEEC-----------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-
T ss_pred ceeEeec-ccceEEEeCCCCeeEEeec-----------CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-
Confidence 4444433 3457777776554333321 12458999999866656555 45688988998765321111
Q ss_pred CccceeccC-CcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE
Q 000054 2311 MESCLCFSS-HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV 2389 (2548)
Q Consensus 2311 ~~s~~t~~g-H~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV 2389 (2548)
..+ ....-.++.+.+..|+.+. ...+.|.+.++.. ......+...-.....+++.|.+ +.+.+
T Consensus 112 ------~~~~~~p~glavd~~~g~ly~~d--~~~~~I~~~~~dG--~~~~~l~~~~l~~P~~iavdp~~------g~ly~ 175 (349)
T 3v64_C 112 ------STGLESPGGLAVDWVHDKLYWTD--SGTSRIEVANLDG--AHRKVLLWQSLEKPRAIALHPME------GTIYW 175 (349)
T ss_dssp ------CSSCSCCCEEEEETTTTEEEEEE--TTTTEEEEEETTS--CSCEEEECTTCSCEEEEEEETTT------TEEEE
T ss_pred ------eCCCCCccEEEEecCCCeEEEEc--CCCCeEEEEcCCC--CceEEEEeCCCCCcceEEEecCc------CeEEE
Confidence 111 1111234666555554443 3578899999864 22222222334567899999874 55666
Q ss_pred EEeCC-CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCE
Q 000054 2390 TGGKG-GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSL 2468 (2548)
Q Consensus 2390 SGS~D-GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~ 2468 (2548)
+-..+ +.|...|+. |.....+ ....-..-..++++|++..
T Consensus 176 td~~~~~~I~r~~~d----G~~~~~~-----------------------------------~~~~~~~PnGla~d~~~~~ 216 (349)
T 3v64_C 176 TDWGNTPRIEASSMD----GSGRRII-----------------------------------ADTHLFWPNGLTIDYAGRR 216 (349)
T ss_dssp EECSSSCEEEEEETT----SCSCEES-----------------------------------CCSSCSCEEEEEEETTTTE
T ss_pred eccCCCCEEEEEeCC----CCCcEEE-----------------------------------EECCCCCcceEEEeCCCCE
Confidence 65555 777777742 1211111 0112235678999987665
Q ss_pred EEEE-eCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2469 FLTG-SKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2469 LaSG-S~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
|+.+ +..+.|..+|+........+. ... .....+++..+. +++-...+.|...+..+|
T Consensus 217 lY~aD~~~~~I~~~~~dG~~~~~~~~--------------~~~----~~P~giav~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 217 MYWVDAKHHVIERANLDGSHRKAVIS--------------QGL----PHPFAITVFEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEEC--------------SSC----SSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EEEEECCCCEEEEEeCCCCceEEEEe--------------CCC----CCceEEEEECCEEEEecCCCCeEEEEEccCC
Confidence 5555 456789999986433222120 000 112345665555 456666777777774333
No 272
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.96 E-value=1.5 Score=58.40 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=25.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2465 NTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.+.+++.|+.||.++.||.++|+.+.+++
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 56778889999999999999999998773
No 273
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.96 E-value=1.6 Score=57.85 Aligned_cols=29 Identities=31% Similarity=0.578 Sum_probs=25.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2465 NTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.+.+++.|+.||.++.||.++|+.+.+++
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 46788889999999999999999998873
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=94.94 E-value=9.1 Score=46.24 Aligned_cols=227 Identities=12% Similarity=-0.003 Sum_probs=124.6
Q ss_pred EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEEcCCC---ccccc
Q 000054 2233 FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQLEVG---GRSNV 2308 (2548)
Q Consensus 2233 ~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWDl~tg---k~i~i 2308 (2548)
+|+.+.. ..|+..|+.+.+....+.. ...+..++|++.+..++.+ ..++.|..++++.. .....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~-----------~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~ 70 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-----------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 70 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECS-----------CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred EEEEECC-CeEEEEECCCcceEehhcC-----------CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE
Confidence 3444333 4688899887765444321 2568899999876555555 45689999998751 11100
Q ss_pred ccCccceecc---CCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCC
Q 000054 2309 RPMESCLCFS---SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVS 2385 (2548)
Q Consensus 2309 ~p~~s~~t~~---gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g 2385 (2548)
... ..... .++.+.+..++.+. ..++.|.+.|... ......+.........+++.|.+ +
T Consensus 71 -------~~~~~~~~p~g-lavd~~~~~ly~~d--~~~~~I~~~~~~g--~~~~~~~~~~~~~P~~iavdp~~------g 132 (316)
T 1ijq_A 71 -------VISRDIQAPDG-LAVDWIHSNIYWTD--SVLGTVSVADTKG--VKRKTLFRENGSKPRAIVVDPVH------G 132 (316)
T ss_dssp -------EECSSCSCCCE-EEEETTTTEEEEEE--TTTTEEEEEETTS--SSEEEEEECTTCCEEEEEEETTT------T
T ss_pred -------EEeCCCCCcCE-EEEeecCCeEEEEE--CCCCEEEEEeCCC--CceEEEEECCCCCcceEEeCCCC------C
Confidence 011 11222 34666555554443 3678999999863 22222222234567899999863 4
Q ss_pred CEEEEEeCC-CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC
Q 000054 2386 PLIVTGGKG-GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP 2464 (2548)
Q Consensus 2386 ~lLVSGS~D-GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP 2464 (2548)
.++++.... +.|...++. |.....+ ....-.....++++|
T Consensus 133 ~ly~~d~~~~~~I~~~~~d----G~~~~~~-----------------------------------~~~~~~~P~gla~d~ 173 (316)
T 1ijq_A 133 FMYWTDWGTPAKIKKGGLN----GVDIYSL-----------------------------------VTENIQWPNGITLDL 173 (316)
T ss_dssp EEEEEECSSSCEEEEEETT----SCCEEEE-----------------------------------ECSSCSCEEEEEEET
T ss_pred EEEEEccCCCCeEEEEcCC----CCCeEEE-----------------------------------EECCCCCceEEEEec
Confidence 455554433 677777732 2222221 011223567899999
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECC
Q 000054 2465 NTSLFLTG-SKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2465 dG~~LaSG-S~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~ 2542 (2548)
++..|+.+ +..+.|..+|+.... ...+-.. ... .+| ...+++..+. +++-...+.|..++..
T Consensus 174 ~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~--~~~------~~~-------P~giav~~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 174 LSGRLYWVDSKLHSISSIDVNGGN-RKTILED--EKR------LAH-------PFSLAVFEDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCS-CEEEEEC--TTT------TSS-------EEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred cCCEEEEEECCCCeEEEEecCCCc-eEEEeec--CCc------cCC-------cEEEEEECCEEEEEECCCCeEEEEeCC
Confidence 77666555 456789999987432 2222000 000 011 2345665555 5566677788888865
Q ss_pred CC
Q 000054 2543 DY 2544 (2548)
Q Consensus 2543 sg 2544 (2548)
++
T Consensus 238 ~g 239 (316)
T 1ijq_A 238 TG 239 (316)
T ss_dssp TC
T ss_pred CC
Confidence 44
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=94.31 E-value=3.2 Score=51.83 Aligned_cols=204 Identities=12% Similarity=0.010 Sum_probs=115.1
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVWD 2299 (2548)
..+++|++.+. ++.+-...+.|+.++.+.+.....+.. .......+++++.+..| ++-...+.|.+.+
T Consensus 118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~----------~~~~p~glavd~~~g~lY~~d~~~~~I~~~~ 187 (386)
T 3v65_B 118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST----------GLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 187 (386)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS----------SCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC----------CCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence 47889997655 444556678899999876653333211 01345678888755544 4545567888888
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC-CeEEEEECCCCCCCcceee-eccCCCeEEEEEccC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG-INVVVWDTLAPPTSSRASI-TCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D-GtVrIWDl~t~~~k~v~sl-~gHs~~VtSLafsP~ 2377 (2548)
++......... . -...... .++.|.+..++.+. ..+ +.|...++.. .....+ ...-...+.|+++|.
T Consensus 188 ~dg~~~~~l~~----~-~l~~P~g-iavdp~~g~ly~td--~~~~~~I~r~~~dG---~~~~~~~~~~~~~PnGlavd~~ 256 (386)
T 3v65_B 188 LDGAHRKVLLW----Q-SLEKPRA-IALHPMEGTIYWTD--WGNTPRIEASSMDG---SGRRIIADTHLFWPNGLTIDYA 256 (386)
T ss_dssp TTSCSCEEEEC----S-SCSCEEE-EEEETTTTEEEEEE--CSSSCEEEEEETTS---CSCEEEECSSCSCEEEEEEEGG
T ss_pred CCCCceEEeec----C-CCCCCcE-EEEEcCCCeEEEec--cCCCCEEEEEeCCC---CCcEEEEECCCCCeeeEEEeCC
Confidence 76432111100 0 0011112 24677666555544 134 6788888763 232222 222345789999987
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
+ +.+.++-+..+.|..+|+. |...+.+ . .......
T Consensus 257 ~------~~lY~aD~~~~~I~~~d~d----G~~~~~~--------------------------------~---~~~~~~P 291 (386)
T 3v65_B 257 G------RRMYWVDAKHHVIERANLD----GSHRKAV--------------------------------I---SQGLPHP 291 (386)
T ss_dssp G------TEEEEEETTTTEEEEECTT----SCSCEEE--------------------------------E---CSSCSSE
T ss_pred C------CEEEEEECCCCEEEEEeCC----CCeeEEE--------------------------------E---ECCCCCc
Confidence 3 5566666677888888843 1111111 0 1112344
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
..+++ ..+.++++-...+.|..+|..+|+.+.++
T Consensus 292 ~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 292 FAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp EEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 56777 34556666666788888886666655554
No 276
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=94.29 E-value=5.5 Score=49.02 Aligned_cols=154 Identities=10% Similarity=-0.010 Sum_probs=90.4
Q ss_pred EEEEEEcCCCCEE-EEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFF-LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~L-ASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVWD 2299 (2548)
..+++|++.+..| .+-...+.|+.++.+.+.....+.. .......+++.+.+..| ++-...+.|.+.+
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~----------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~ 144 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST----------GLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 144 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------SCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC----------CCCCccEEEEecCCCeEEEEcCCCCeEEEEc
Confidence 4788998765544 4555678899999876553333211 11345788998755444 5555668899999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC-CeEEEEECCCCCCCcceee-eccCCCeEEEEEccC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG-INVVVWDTLAPPTSSRASI-TCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D-GtVrIWDl~t~~~k~v~sl-~gHs~~VtSLafsP~ 2377 (2548)
.+......... .-..+... .+++|.+..+..+. ..+ +.|...++.. .....+ ...-...+.|+++|.
T Consensus 145 ~dG~~~~~l~~-----~~l~~P~~-iavdp~~g~ly~td--~~~~~~I~r~~~dG---~~~~~~~~~~~~~PnGla~d~~ 213 (349)
T 3v64_C 145 LDGAHRKVLLW-----QSLEKPRA-IALHPMEGTIYWTD--WGNTPRIEASSMDG---SGRRIIADTHLFWPNGLTIDYA 213 (349)
T ss_dssp TTSCSCEEEEC-----TTCSCEEE-EEEETTTTEEEEEE--CSSSCEEEEEETTS---CSCEESCCSSCSCEEEEEEETT
T ss_pred CCCCceEEEEe-----CCCCCcce-EEEecCcCeEEEec--cCCCCEEEEEeCCC---CCcEEEEECCCCCcceEEEeCC
Confidence 87442111100 00011122 24777655555544 234 7788888763 222222 222345789999987
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeC
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDL 2402 (2548)
+ +.+.++-...+.|..+|+
T Consensus 214 ~------~~lY~aD~~~~~I~~~~~ 232 (349)
T 3v64_C 214 G------RRMYWVDAKHHVIERANL 232 (349)
T ss_dssp T------TEEEEEETTTTEEEEEET
T ss_pred C------CEEEEEECCCCEEEEEeC
Confidence 4 556666667788888884
No 277
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.00 E-value=17 Score=45.52 Aligned_cols=232 Identities=12% Similarity=-0.009 Sum_probs=124.8
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEEcCCCccccccc
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtVrVWDl~tgk~i~i~p 2310 (2548)
.+|+.+. ...|+..++........+. ....+..|+|++.+..|+.++ .++.|..+++....... .
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-----------~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~-~- 149 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-----------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-S- 149 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC-----------SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C-C-
T ss_pred ceeEEec-cceeEEEccCCcceeEecc-----------ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC-c-
Confidence 3444433 4678888887665443331 136789999998666665554 56788888886521000 0
Q ss_pred CccceeccCC--cccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEE
Q 000054 2311 MESCLCFSSH--AMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLI 2388 (2548)
Q Consensus 2311 ~~s~~t~~gH--~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lL 2388 (2548)
........ ...-.++.+.+..|+.+. +..+.|.+.|+.. ......+.........|++.|.. +.+.
T Consensus 150 --~~~~~~~~~~~p~glavD~~~~~lY~~d--~~~~~I~~~~~~g--~~~~~l~~~~~~~P~~iavdp~~------g~ly 217 (400)
T 3p5b_L 150 --YDTVISRDIQAPDGLAVDWIHSNIYWTD--SVLGTVSVADTKG--VKRKTLFRENGSKPRAIVVDPVH------GFMY 217 (400)
T ss_dssp --CEEEECSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEECTTT--CSEEEEEECSSCCEEEEEEETTT------TEEE
T ss_pred --ceEEEeCCCCCcccEEEEecCCceEEEE--CCCCeEEEEeCCC--CceEEEEeCCCCCcceEEEeccc------CeEE
Confidence 00011111 111234666455555544 3678899888863 22222233334567899999873 4455
Q ss_pred EEEeC-CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCC
Q 000054 2389 VTGGK-GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTS 2467 (2548)
Q Consensus 2389 VSGS~-DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~ 2467 (2548)
++-.. .+.|...++. |.....+ . ...-.....|+++|++.
T Consensus 218 ~td~~~~~~I~~~~~d----G~~~~~~--------------------------------~---~~~l~~P~glavd~~~~ 258 (400)
T 3p5b_L 218 WTDWGTPAKIKKGGLN----GVDIYSL--------------------------------V---TENIQWPNGITLDLLSG 258 (400)
T ss_dssp EEECSSSCCEEEEETT----SCSCEEE--------------------------------E---CSSCSCEEEEEEETTTT
T ss_pred EEeCCCCCEEEEEeCC----CCccEEE--------------------------------E---ECCCCceEEEEEEeCCC
Confidence 55422 3677777732 2211111 0 11224567899998777
Q ss_pred EEEEEe-CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2468 LFLTGS-KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2468 ~LaSGS-~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
.|+.+. ..+.|...|+..... .++-.. ... .+| ...+++..+. +.+-...+.|..++..+|
T Consensus 259 ~lY~aD~~~~~I~~~d~dG~~~-~~~~~~--~~~------l~~-------P~gl~v~~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 259 RLYWVDSKLHSISSIDVNGGNR-KTILED--EKR------LAH-------PFSLAVFEDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEEEEETTTTEEEEEETTSCCC-EEEEEC--SST------TSS-------EEEEEEETTEEEEEESSSCSEEEEESSSC
T ss_pred EEEEEECCCCEEEEEeCCCCcc-EEEEeC--CCC------CCC-------CEEEEEeCCEEEEecCCCCeEEEEEcCCC
Confidence 666664 467899999864332 222100 000 011 2345665555 556667788888885554
No 278
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=93.67 E-value=9.8 Score=45.97 Aligned_cols=208 Identities=11% Similarity=-0.012 Sum_probs=113.7
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCC---CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEE
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGK---DKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~t---g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVr 2296 (2548)
..+++|++.+. ++.+-..++.|..++... +.....+- .. .......+++++.+..| ++-..++.|.
T Consensus 32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~--~~-------~~~~p~glavd~~~~~ly~~d~~~~~I~ 102 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SR-------DIQAPDGLAVDWIHSNIYWTDSVLGTVS 102 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE--CS-------SCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE--eC-------CCCCcCEEEEeecCCeEEEEECCCCEEE
Confidence 47888988655 445556678999999875 12222221 10 11345788998755545 4546678999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEEEEEc
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARSISVF 2375 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtSLafs 2375 (2548)
+.+.+......+.. .-...... .++.|.+..++.+... ..+.|...++.. .....+. ..-...+.+++.
T Consensus 103 ~~~~~g~~~~~~~~-----~~~~~P~~-iavdp~~g~ly~~d~~-~~~~I~~~~~dG---~~~~~~~~~~~~~P~gla~d 172 (316)
T 1ijq_A 103 VADTKGVKRKTLFR-----ENGSKPRA-IVVDPVHGFMYWTDWG-TPAKIKKGGLNG---VDIYSLVTENIQWPNGITLD 172 (316)
T ss_dssp EEETTSSSEEEEEE-----CTTCCEEE-EEEETTTTEEEEEECS-SSCEEEEEETTS---CCEEEEECSSCSCEEEEEEE
T ss_pred EEeCCCCceEEEEE-----CCCCCcce-EEeCCCCCEEEEEccC-CCCeEEEEcCCC---CCeEEEEECCCCCceEEEEe
Confidence 99987432111100 00011122 2467755555544311 126788888753 3333222 223567899999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
+++ +.+.++-+..+.|..+|+. |...+.+. .. .....
T Consensus 173 ~~~------~~lY~~D~~~~~I~~~d~d----g~~~~~~~--------------------------------~~-~~~~~ 209 (316)
T 1ijq_A 173 LLS------GRLYWVDSKLHSISSIDVN----GGNRKTIL--------------------------------ED-EKRLA 209 (316)
T ss_dssp TTT------TEEEEEETTTTEEEEEETT----SCSCEEEE--------------------------------EC-TTTTS
T ss_pred ccC------CEEEEEECCCCeEEEEecC----CCceEEEe--------------------------------ec-CCccC
Confidence 874 5566666677889999843 22222210 00 01122
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
....+++. .+.++++-...+.|..+|..+|+.+..+
T Consensus 210 ~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 210 HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 34567775 3555666666778888888777655544
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=93.46 E-value=12 Score=47.69 Aligned_cols=260 Identities=11% Similarity=0.045 Sum_probs=132.1
Q ss_pred EEEEEcCC--CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC----c-E
Q 000054 2223 RAFSSHPL--RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG----T-V 2295 (2548)
Q Consensus 2223 ~~VsfSPd--G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG----t-V 2295 (2548)
..++++|+ +..|..+...+.|+.+|..++....... .......++|+++|+ |+.+...+ . +
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-----------~~~~P~giavd~dG~-lyVad~~~~~~~~gv 209 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-----------NIGQCADVNFTLNGD-MVVVDDQSSDTNTGI 209 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-----------CCSCEEEEEECTTCC-EEEEECCSCTTSEEE
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-----------CCCCccEEEECCCCC-EEEEcCCCCcccceE
Confidence 56788884 3334444333889999988776544331 125689999999999 55554322 1 2
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceee-e-ccCCCeEEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-T-CHEGGARSI 2372 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~-gHs~~VtSL 2372 (2548)
...+...+. ... .... ...+...+ ++++ +|.++++- ..++.|+.+|... +.....+ . +....-..+
T Consensus 210 ~~~~~~~~~-~~~---~~~~-~~~~P~gi-avd~~~G~lyv~d---~~~~~V~~~d~~~--g~~~~~~~~~~~~~~~~~i 278 (433)
T 4hw6_A 210 YLFTRASGF-TER---LSLC-NARGAKTC-AVHPQNGKIYYTR---YHHAMISSYDPAT--GTLTEEEVMMDTKGSNFHI 278 (433)
T ss_dssp EEECGGGTT-CCE---EEEE-ECSSBCCC-EECTTTCCEEECB---TTCSEEEEECTTT--CCEEEEEEECSCCSSCEEE
T ss_pred EEEECCCCe-ecc---cccc-ccCCCCEE-EEeCCCCeEEEEE---CCCCEEEEEECCC--CeEEEEEeccCCCCCcccE
Confidence 222222111 000 0000 11122223 4677 66666553 2678899998864 2221122 1 112233569
Q ss_pred EEccCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCcee--eeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc
Q 000054 2373 SVFDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKTK--KHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2373 afsP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~l--~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi 2449 (2548)
+++|+ ++ +.++-...+.|+.+|.. ..++... ..+... +...|. .++. .
T Consensus 279 a~dpd-------G~~LYvad~~~~~I~~~~~d-~~~~~~~~~~~~ag~------------~g~~g~----~dg~-----~ 329 (433)
T 4hw6_A 279 VWHPT-------GDWAYIIYNGKHCIYRVDYN-RETGKLAVPYIVCGQ------------HSSPGW----VDGM-----G 329 (433)
T ss_dssp EECTT-------SSEEEEEETTTTEEEEEEBC-TTTCCBCCCEEEEEC------------TTCCCC----BCEE-----G
T ss_pred EEeCC-------CCEEEEEeCCCCEEEEEeCC-CCCcccCcEEEEEec------------CCCCcc----CCCc-----c
Confidence 99998 55 56666677889998843 1122110 111000 000000 0000 0
Q ss_pred ccCCCCCEEEEEE---------eCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCc------ee
Q 000054 2450 PKAHLGSVTRIST---------VPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGV------VR 2514 (2548)
Q Consensus 2450 ~~gH~~~VtsLaf---------SPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~------V~ 2514 (2548)
..+.-..-..+++ +++|.+.++-...+.|+.++. +|.. .++-+..... ..|..+- -.
T Consensus 330 ~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~------~~G~~dG~~~~~~~~ 401 (433)
T 4hw6_A 330 TGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSR------EWGYVDGELRSQALF 401 (433)
T ss_dssp GGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTC------SSCCBCEETTTTCBC
T ss_pred cceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCC------ccccCCCccccccEe
Confidence 0112234668888 777777777777789999985 5644 3331110000 0111000 01
Q ss_pred ecEEEEEEc-CCe--EEEEECCCcEEEEECC
Q 000054 2515 AGVTDIQVV-SRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2515 a~VtsLafS-PdG--LaSGS~DGtIrIWDL~ 2542 (2548)
.....|+++ ++| +++-...+.|+..+++
T Consensus 402 ~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 402 NHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 224678999 666 4455566788887764
No 280
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=93.08 E-value=13 Score=46.74 Aligned_cols=207 Identities=10% Similarity=-0.011 Sum_probs=112.8
Q ss_pred EEEEEEcCCCCEE-EEEECCCeEEEEEcCCCc----eeEEEeccCCCCCCCCCCCCCeEEEEEccCC-CEEEEEeCCCcE
Q 000054 2222 TRAFSSHPLRPFF-LVGSSNTHIYLWEFGKDK----ATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~L-ASGS~DGsVrLWDl~tg~----~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG-~~LaSGS~DGtV 2295 (2548)
+.+++|++.+..| .+-...+.|+.++++... ....+.. .......+++.+.+ +.+++-...+.|
T Consensus 114 ~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~----------~~~~p~glavD~~~~~lY~~d~~~~~I 183 (400)
T 3p5b_L 114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR----------DIQAPDGLAVDWIHSNIYWTDSVLGTV 183 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS----------SCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC----------CCCCcccEEEEecCCceEEEECCCCeE
Confidence 5889999865544 455567888888876521 2222210 12567899999854 444455567889
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCCCeEEEEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGGARSISV 2374 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~~VtSLaf 2374 (2548)
.+.+++........ ........-.++.|.+..++.+... ..+.|...++.. .....+ ...-...+.|++
T Consensus 184 ~~~~~~g~~~~~l~------~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG---~~~~~~~~~~l~~P~glav 253 (400)
T 3p5b_L 184 SVADTKGVKRKTLF------RENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG---VDIYSLVTENIQWPNGITL 253 (400)
T ss_dssp EEECTTTCSEEEEE------ECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTS---CSCEEEECSSCSCEEEEEE
T ss_pred EEEeCCCCceEEEE------eCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCC---CccEEEEECCCCceEEEEE
Confidence 88888754321110 0001111112467755555544311 246788888763 232222 223356789999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
.+.+ +.+.++-...+.|..+|+. |...+.+. . ..+..
T Consensus 254 d~~~------~~lY~aD~~~~~I~~~d~d----G~~~~~~~--------------------------------~-~~~~l 290 (400)
T 3p5b_L 254 DLLS------GRLYWVDSKLHSISSIDVN----GGNRKTIL--------------------------------E-DEKRL 290 (400)
T ss_dssp ETTT------TEEEEEETTTTEEEEEETT----SCCCEEEE--------------------------------E-CSSTT
T ss_pred EeCC------CEEEEEECCCCEEEEEeCC----CCccEEEE--------------------------------e-CCCCC
Confidence 9874 4555665667788888843 22222210 0 01122
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2455 GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
....++++. .+.++++-...+.|..+|..+|+.+.++
T Consensus 291 ~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 291 AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp SSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred CCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 234466663 3445556566778888887777655544
No 281
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=92.99 E-value=23 Score=46.11 Aligned_cols=279 Identities=10% Similarity=0.052 Sum_probs=139.9
Q ss_pred EEEEEcCC--CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEE-------ccCCCEEEEEeCCC
Q 000054 2223 RAFSSHPL--RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQF-------DHYGHRFASAALDG 2293 (2548)
Q Consensus 2223 ~~VsfSPd--G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaF-------SPdG~~LaSGS~DG 2293 (2548)
..++|+|. ++++++-...+.|++.|..++........ . .........|+| +++|+.|+++...+
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~-~------~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI-N------TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC-T------TSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc-C------ccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 67788883 44555555556788888887765544422 1 012356899999 99999777776554
Q ss_pred -c------EEEEEcCCCcccccccC-ccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECC-------CCCC-C
Q 000054 2294 -T------VCTWQLEVGGRSNVRPM-ESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL-------APPT-S 2357 (2548)
Q Consensus 2294 -t------VrVWDl~tgk~i~i~p~-~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~-------t~~~-k 2357 (2548)
. |.+.+..........+. .....+ .|...+ +++|++..|..+. ..++.|..+|+. ++.. .
T Consensus 215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~gi-avdp~~g~LYvtd--~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 215 GKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGA-TIHPINGELYFNS--YEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp TTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCE-EECTTTCCEEEEE--TTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred CCcccCceEEEEecCCCCceeecccceeeccC-CCceEE-EEcCCCCeEEEEE--CCCCEEEEEecccccccccCceeec
Confidence 2 55555443111110000 011112 233333 4678544444433 367889999986 3211 0
Q ss_pred c--------cee-ee-ccCCCeEEEEEccCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCce--eeeecCCCCCCCcc
Q 000054 2358 S--------RAS-IT-CHEGGARSISVFDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKT--KKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2358 ~--------v~s-l~-gHs~~VtSLafsP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~--l~tl~~~~~~s~~~ 2424 (2548)
+ ... +. +.......++|+|+ ++ +.++-.....|+.+|.. ..++.. ...+-...
T Consensus 291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~-------G~~lYvaD~~~h~I~kid~d-g~~~~~~~~~~~aG~~------ 356 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPT-------GKYAYFGVINNHYFMRSDYD-EIKKEFITPYNFVGGY------ 356 (496)
T ss_dssp CBGGGCTTTEEEEEECSSSSCCEEEEECTT-------SSEEEEEETTTTEEEEEEEE-TTTTEECCCEEEEEBT------
T ss_pred ccccccccccceeEecCCCCCceEEEEcCC-------CCEEEEEeCCCCEEEEEecC-CCcceecccEEecCCC------
Confidence 0 111 11 22345688999998 66 45555677888887632 112211 01110000
Q ss_pred ccccccCCCCCCccCCCCCceEEEcccCCCCCEE-EEEEe-------CCCCEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000054 2425 TCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT-RISTV-------PNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt-sLafS-------PdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
...| ..|+.. ..+.-..-. .++.+ ++|.++++=.....|+.++ .+|. +.++-+..
T Consensus 357 ------g~~G----~~DG~~-----~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g 419 (496)
T 3kya_A 357 ------KQSG----YRDDVG-----TEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRG 419 (496)
T ss_dssp ------TBCC----CBCCBG-----GGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESC
T ss_pred ------CCCc----ccCCcc-----cccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEeccc
Confidence 0000 001100 011122233 45554 4566777666778899998 4564 44442211
Q ss_pred cccccccCcc-cCCCCc------eeecEEEEEEcCC-e--EEEEECCCcEEEEECCCC
Q 000054 2497 ERHTFLQPSS-RGFGGV------VRAGVTDIQVVSR-G--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2497 s~hsfl~~tl-~GH~~~------V~a~VtsLafSPd-G--LaSGS~DGtIrIWDL~sg 2544 (2548)
..... .+.. .|..+- -......|+++++ | +++=.....||.++++..
T Consensus 420 ~~~~~-~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 420 ASTSL-ADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp TTHHH-HHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred ccccc-cCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 00000 0000 011110 0122467899996 6 445566788999998765
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=92.89 E-value=31 Score=47.44 Aligned_cols=183 Identities=15% Similarity=0.030 Sum_probs=101.9
Q ss_pred CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCCcEEEEEcCCCcccccccCccceecc
Q 000054 2240 NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGTVCTWQLEVGGRSNVRPMESCLCFS 2318 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~ 2318 (2548)
...|+..++........+. ....+..|+|++.+..|+ +-...+.|..+++........ ....+.
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~-----------~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~----~~~vi~ 467 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIP-----------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS----YDTVIS 467 (791)
T ss_dssp BSSEEEECTTSCCCEEEEC-----------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEEC
T ss_pred ccceeEeeccCCcceeeec-----------CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc----eeEEEe
Confidence 3557777777654433321 125688999998655555 445567888888874311000 000111
Q ss_pred --CCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCCCeEEEEEccCCCCCCCCCCEEEEEeCC-
Q 000054 2319 --SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGGARSISVFDNDLGSGSVSPLIVTGGKG- 2394 (2548)
Q Consensus 2319 --gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~D- 2394 (2548)
.....-.++.+.+..|+.+. +..+.|.+.++.. .....+ .........|++.|.. +.+.++-..+
T Consensus 468 ~~l~~P~GLAvD~~~~~LY~tD--~~~~~I~v~~ldG---~~~~~l~~~~l~~P~gIaVDp~~------g~LYwtD~g~~ 536 (791)
T 3m0c_C 468 RDIQAPDGLAVDWIHSNIYWTD--SVLGTVSVADTKG---VKRKTLFRENGSKPRAIVVDPVH------GFMYWTDWGTP 536 (791)
T ss_dssp SSCSCCCEEEEETTTTEEEEEE--TTTTEEEEEETTS---SSEEEEEECTTCCEEEEEEETTT------TEEEEEECSSS
T ss_pred cCCCCcceeeeeecCCcEEEEe--cCCCeEEEEeCCC---CeEEEEEeCCCCCcceEEEecCC------CCEEEecCCCC
Confidence 11112235777776666655 4678999999863 333333 2334568899999873 4455554333
Q ss_pred CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEe-
Q 000054 2395 GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGS- 2473 (2548)
Q Consensus 2395 GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS- 2473 (2548)
+.|...++. |.....+ ....-.....|++++.+..|+.+.
T Consensus 537 ~~I~~~~~d----G~~~~~l-----------------------------------v~~~l~~P~GLavD~~~~~LYwaD~ 577 (791)
T 3m0c_C 537 AKIKKGGLN----GVDIYSL-----------------------------------VTENIQWPNGITLDLLSGRLYWVDS 577 (791)
T ss_dssp CEEEEEETT----SCCEEEE-----------------------------------ECSSCSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEecC----CCceEEE-----------------------------------EeCCCCCceEEEEecCCCeEEEEeC
Confidence 677777742 2222222 011234677899998766666553
Q ss_pred CCCcEEEEECCCCc
Q 000054 2474 KDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2474 ~DGtIrIWDl~Tge 2487 (2548)
..+.|...|+....
T Consensus 578 ~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 578 KLHSISSIDVNGGN 591 (791)
T ss_dssp TTTEEEEEETTSCS
T ss_pred CCCcEEEEecCCCc
Confidence 45678888886433
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=92.24 E-value=14 Score=45.08 Aligned_cols=205 Identities=12% Similarity=0.012 Sum_probs=113.6
Q ss_pred EEEEEEcCC-CCEEEEEECCCeEEEEEcCCCceeE-EEeccCCCCCCCCCCCCCeEEEEEccCC-CEEEEEeCCCcEEEE
Q 000054 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATA-TYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg~~l~-t~~~l~ghs~~~~~H~~~VtsVaFSPdG-~~LaSGS~DGtVrVW 2298 (2548)
..+++|++. +.++.+-...+.|..++.+.+.... .+.. .......+++.+.+ +.+++-...+.|.++
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~----------~l~~p~glavd~~~g~ly~~d~~~~~I~~~ 106 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS----------GLLSPDGLACDWLGEKLYWTDSETNRIEVS 106 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE----------CCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC----------CCCCccEEEEEcCCCeEEEEECCCCEEEEE
Confidence 578899985 4455566677889999987653211 1111 11346688998754 444555567899999
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCCCeEEEEEccC
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGGARSISVFDN 2377 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~~VtSLafsP~ 2377 (2548)
+.+......... . -...... .++.|.+..++.+... ..+.|...++.. .....+ ...-...+.++++++
T Consensus 107 ~~dG~~~~~l~~----~-~~~~P~g-iavdp~~g~ly~td~~-~~~~I~r~~~dG---~~~~~~~~~~l~~Pnglavd~~ 176 (318)
T 3sov_A 107 NLDGSLRKVLFW----Q-ELDQPRA-IALDPSSGFMYWTDWG-EVPKIERAGMDG---SSRFIIINSEIYWPNGLTLDYE 176 (318)
T ss_dssp ETTSCSCEEEEC----S-SCSSEEE-EEEEGGGTEEEEEECS-SSCEEEEEETTS---CSCEEEECSSCSCEEEEEEETT
T ss_pred ECCCCcEEEEEe----C-CCCCccE-EEEeCCCCEEEEEecC-CCCEEEEEEcCC---CCeEEEEECCCCCccEEEEecc
Confidence 987432111100 0 0011112 2466654554444311 356788888753 222222 222345688999987
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
+ +.+.++-+..+.|..+|+. |...+.+. .+.....
T Consensus 177 ~------~~lY~aD~~~~~I~~~d~d----G~~~~~~~-----------------------------------~~~~~~P 211 (318)
T 3sov_A 177 E------QKLYWADAKLNFIHKSNLD----GTNRQAVV-----------------------------------KGSLPHP 211 (318)
T ss_dssp T------TEEEEEETTTTEEEEEETT----SCSCEEEE-----------------------------------CSCCSCE
T ss_pred C------CEEEEEECCCCEEEEEcCC----CCceEEEe-----------------------------------cCCCCCc
Confidence 3 5566666677888888843 22222220 1112334
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
..+++. .+.++.+-...+.|..+|..+|+....+
T Consensus 212 ~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 212 FALTLF-EDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 566665 3345555556778888888777654444
No 284
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=92.10 E-value=22 Score=43.03 Aligned_cols=233 Identities=11% Similarity=0.056 Sum_probs=114.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.+++ +..+++ +.+|.|.. ..+.|+.-....... .+.+.+..+.+.+++..++.+ .+|.| |...
T Consensus 82 ~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~ 148 (327)
T 2xbg_A 82 FNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDP-------KLPGSPRLIKALGNGSAEMIT-NVGAI--YRTK 148 (327)
T ss_dssp EEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCT-------TCSSCEEEEEEEETTEEEEEE-TTCCE--EEES
T ss_pred EEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECcccc-------CCCCCeEEEEEECCCCEEEEe-CCccE--EEEc
Confidence 46677776 444444 45564433 333454444332110 122457888887777666555 45644 3222
Q ss_pred -CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEE-EEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2302 -VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVV-VWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 -tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVr-IWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
.|+.-... ..+....+. .+.+++.+++++ .++.+. -+|-.....+.+ -......+..+.+.++
T Consensus 149 DgG~tW~~~-------~~~~~~~~~~~~~~~~~~~~~~g----~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~ 215 (327)
T 2xbg_A 149 DSGKNWQAL-------VQEAIGVMRNLNRSPSGEYVAVS----SRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPD 215 (327)
T ss_dssp STTSSEEEE-------ECSCCCCEEEEEECTTSCEEEEE----TTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTT
T ss_pred CCCCCCEEe-------ecCCCcceEEEEEcCCCcEEEEE----CCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCC
Confidence 22211000 112222333 367788888775 344443 344311111122 1234567888888776
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
+.+ +.++.+|.+++.+ ...|+.-...... ...+...+
T Consensus 216 -------g~~-~~~~~~G~~~~s~---~D~G~tW~~~~~~--------------------------------~~~~~~~~ 252 (327)
T 2xbg_A 216 -------GRL-WMIVNGGKIAFSD---PDNSENWGELLSP--------------------------------LRRNSVGF 252 (327)
T ss_dssp -------SCE-EEEETTTEEEEEE---TTEEEEECCCBCT--------------------------------TSSCCSCE
T ss_pred -------CCE-EEEeCCceEEEec---CCCCCeeEeccCC--------------------------------cccCCcce
Confidence 444 4556678877763 1112221111000 00122357
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcE
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSV 2536 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtI 2536 (2548)
.++++.+++.+++++. +|.| .+....|+.-..+.. ..++. ..+.++.|.+++ ++.++.+|+|
T Consensus 253 ~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~-----------~~~~~----~~~~~v~~~~~~~~~~~G~~G~i 315 (327)
T 2xbg_A 253 LDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVD-----------VKKVP----SNFYKILFFSPDQGFILGQKGIL 315 (327)
T ss_dssp EEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGG-----------GTTSS----SCCCEEEEEETTEEEEECSTTEE
T ss_pred EEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCc-----------cCCCC----CCeEEEEEECCCceEEEcCCceE
Confidence 8899998888777664 6766 344444543322210 00111 123455676555 8888899987
Q ss_pred EEEE
Q 000054 2537 KLIQ 2540 (2548)
Q Consensus 2537 rIWD 2540 (2548)
.-++
T Consensus 316 ~~~~ 319 (327)
T 2xbg_A 316 LRYV 319 (327)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6665
No 285
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=92.09 E-value=11 Score=46.48 Aligned_cols=109 Identities=10% Similarity=0.041 Sum_probs=59.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC---CCEEEEEeC----C--
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY---GHRFASAAL----D-- 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd---G~~LaSGS~----D-- 2292 (2548)
...++|.|+|+++++ ..+|.|++++ .+++ ..+...+. ..........|+|+|+ +..|+.+.. +
T Consensus 31 P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~--~~~~~~~v----~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK--KLVASFDV----ANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp EEEEEEEETTEEEEE-ETTTEEEEEC-SSCE--EEEEECCC----CCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred CeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc--eEeeccce----eecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence 478889999985554 5669999887 4454 33322110 0011256899999997 555555433 3
Q ss_pred --CcEEEEEcCCCc-ccc-cccC-ccceeccCCcccEEEEcCCCCEEEEEe
Q 000054 2293 --GTVCTWQLEVGG-RSN-VRPM-ESCLCFSSHAMDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2293 --GtVrVWDl~tgk-~i~-i~p~-~s~~t~~gH~~~V~afSpdGslLATgG 2338 (2548)
+.|..|+...+. ... .... ........|...-..|.|||.++++.|
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 567777765431 000 0000 000011234433356899999888765
No 286
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.04 E-value=12 Score=45.98 Aligned_cols=109 Identities=12% Similarity=0.048 Sum_probs=60.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC---CCEEEEEeC-C-----
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY---GHRFASAAL-D----- 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd---G~~LaSGS~-D----- 2292 (2548)
...++|.|+|+++++ ..+|.|++++ +++. ..+...+. ..........|+|+|+ +..|+.+.. +
T Consensus 33 P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~~~~~v----~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STYAELSV----YHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR 104 (352)
T ss_dssp EEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEEEECCC----CCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred ceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEeecceE----eecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence 478999999996555 5669999998 4432 22221110 0111356899999998 555555443 2
Q ss_pred CcEEEEEcCCCcccccccCcc-ce--eccCCcccEEEEcCCCCEEEEEe
Q 000054 2293 GTVCTWQLEVGGRSNVRPMES-CL--CFSSHAMDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s-~~--t~~gH~~~V~afSpdGslLATgG 2338 (2548)
+.|..++...+.......... .. .-..|...-..+.|+|.+.++.|
T Consensus 105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 567777776431100000000 00 01124333346899998877754
No 287
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=91.65 E-value=30 Score=42.07 Aligned_cols=222 Identities=10% Similarity=-0.042 Sum_probs=120.9
Q ss_pred CCeEEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCCcEEEEEcCCCcccccccCcccee
Q 000054 2240 NTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGTVCTWQLEVGGRSNVRPMESCLC 2316 (2548)
Q Consensus 2240 DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DGtVrVWDl~tgk~i~i~p~~s~~t 2316 (2548)
...|+..+++... ....+.. ...+.+++|++.+..|+ +-..++.|..++.+.+..... ...
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~-----------~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~-----~~~ 75 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGG-----------LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-----VVV 75 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEE-----------EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-----EEE
T ss_pred cCeEEEEECCCCceEEEEEecC-----------CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-----EEc
Confidence 4678889988653 1111111 13577899998655554 445567898898875521110 000
Q ss_pred ccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCCCeEEEEEccCCCCCCCCCCEEEEEe-CC
Q 000054 2317 FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGGARSISVFDNDLGSGSVSPLIVTGG-KG 2394 (2548)
Q Consensus 2317 ~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~D 2394 (2548)
..-....-.++.+.+..|+.+. +..+.|.++++.. .....+ .........+++.|.. +.+.++-. ..
T Consensus 76 ~~l~~p~glavd~~~g~ly~~d--~~~~~I~~~~~dG---~~~~~l~~~~~~~P~giavdp~~------g~ly~td~~~~ 144 (318)
T 3sov_A 76 SGLLSPDGLACDWLGEKLYWTD--SETNRIEVSNLDG---SLRKVLFWQELDQPRAIALDPSS------GFMYWTDWGEV 144 (318)
T ss_dssp ECCSCCCEEEEETTTTEEEEEE--TTTTEEEEEETTS---CSCEEEECSSCSSEEEEEEEGGG------TEEEEEECSSS
T ss_pred CCCCCccEEEEEcCCCeEEEEE--CCCCEEEEEECCC---CcEEEEEeCCCCCccEEEEeCCC------CEEEEEecCCC
Confidence 0001111234666555444443 3678899999864 222222 2334567889998863 44455442 35
Q ss_pred CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEE-e
Q 000054 2395 GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTG-S 2473 (2548)
Q Consensus 2395 GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSG-S 2473 (2548)
+.|...++. |.....+ . ...-..-..++++|++..|+.+ +
T Consensus 145 ~~I~r~~~d----G~~~~~~--------------------------------~---~~~l~~Pnglavd~~~~~lY~aD~ 185 (318)
T 3sov_A 145 PKIERAGMD----GSSRFII--------------------------------I---NSEIYWPNGLTLDYEEQKLYWADA 185 (318)
T ss_dssp CEEEEEETT----SCSCEEE--------------------------------E---CSSCSCEEEEEEETTTTEEEEEET
T ss_pred CEEEEEEcC----CCCeEEE--------------------------------E---ECCCCCccEEEEeccCCEEEEEEC
Confidence 677777732 2211111 0 1112345789999976665555 4
Q ss_pred CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCCc
Q 000054 2474 KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2474 ~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
..+.|..+|+..... .++- .+.. .....+++..++ +.+-...+.|..++..++.
T Consensus 186 ~~~~I~~~d~dG~~~-~~~~-------------~~~~----~~P~glav~~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 186 KLNFIHKSNLDGTNR-QAVV-------------KGSL----PHPFALTLFEDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp TTTEEEEEETTSCSC-EEEE-------------CSCC----SCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCEEEEEcCCCCce-EEEe-------------cCCC----CCceEEEEeCCEEEEEecCCCeEEEEECCCCC
Confidence 567899999864322 2220 1000 112345666666 5566677888888876553
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=91.05 E-value=28 Score=43.40 Aligned_cols=203 Identities=8% Similarity=0.131 Sum_probs=116.8
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC----CCE----EEEEeC--CCcEEEEE
Q 000054 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY----GHR----FASAAL--DGTVCTWQ 2299 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd----G~~----LaSGS~--DGtVrVWD 2299 (2548)
...+++...+.+-+.+||+ +|+.+..+.. +.+..+..-|+ |+. +++.-. +++|++|+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~------------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~ 105 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT------------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA 105 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC------------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC------------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEE
Confidence 4456777788889999999 8888877632 45666666652 322 233333 57999998
Q ss_pred cC--CCcccccccCc--cceeccCCcccEEEE-cCC-CC-EEEEEeccCCCCeEEEEECCCC-C----CCcceeeeccCC
Q 000054 2300 LE--VGGRSNVRPME--SCLCFSSHAMDVSYI-TSS-GS-VIAAAGHSSNGINVVVWDTLAP-P----TSSRASITCHEG 2367 (2548)
Q Consensus 2300 l~--tgk~i~i~p~~--s~~t~~gH~~~V~af-Spd-Gs-lLATgG~SS~DGtVrIWDl~t~-~----~k~v~sl~gHs~ 2367 (2548)
+. ++. +...... ...+-......++.+ ++. +. ++++.+ .+|.+..|++... . .+.++.+.. .+
T Consensus 106 iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~---k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gs 180 (355)
T 3amr_A 106 IDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG---KEGEFEQYELKADKNGYISGKKVRAFKM-NS 180 (355)
T ss_dssp ECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSCEEEEEEEEEEC-SS
T ss_pred ECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC---CCCeEEEEEEEeCCCCcccceEEEEecC-CC
Confidence 74 332 1111000 000000222334432 563 54 344443 7899999988531 1 234555553 35
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCcccc---CceeeeecCCCCCCCccccccccCCCCCCccCCCCCc
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIAT---GKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNG 2444 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~T---Gk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv 2444 (2548)
.+-.+.+.+. ...|..+-.|..|..+|.+- .. ++.+...
T Consensus 181 q~EgcvvDd~-------~g~Lyv~eEd~GIw~~da~p-~~~~~~~~v~~~------------------------------ 222 (355)
T 3amr_A 181 QTEGMAADDE-------YGRLYIAEEDEAIWKFSAEP-DGGSNGTVIDRA------------------------------ 222 (355)
T ss_dssp CEEEEEEETT-------TTEEEEEETTTEEEEEECST-TSCSCCEEEEEB------------------------------
T ss_pred CcceEEEcCC-------CCeEEEecccceEEEEeCCc-CCCCCceEEEEe------------------------------
Confidence 6777777776 45888888886665555331 11 1111111
Q ss_pred eEEEcccCC-CCCEEEEEEe--CCCC-EEEEEe-CCCcEEEEECC-CCcEEEEec
Q 000054 2445 MLWYIPKAH-LGSVTRISTV--PNTS-LFLTGS-KDGDVKLWDAK-AAQLVYHWS 2493 (2548)
Q Consensus 2445 ~Iwdi~~gH-~~~VtsLafS--PdG~-~LaSGS-~DGtIrIWDl~-Tgell~tL~ 2493 (2548)
-.++ ...+..|++. ++++ +|++.+ .+.+..|||.+ +.+.+..|.
T Consensus 223 -----~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 223 -----DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp -----SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred -----cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 0122 2367788874 4555 666666 57799999997 788888773
No 289
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=91.04 E-value=36 Score=41.95 Aligned_cols=113 Identities=14% Similarity=0.079 Sum_probs=58.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC---CCEEEEEe-C------
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY---GHRFASAA-L------ 2291 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd---G~~LaSGS-~------ 2291 (2548)
...++|.|+|+.+.++...|.|++++.+ +.....+...+. ......+....|+|+|+ +..|+.+. .
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~---v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPD---VWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCC---CCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcc---cccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 4789999999934445567999999853 332212211110 00111356789999996 44454442 2
Q ss_pred -CCcEEEEEcCCCc-ccc-ccc---CccceeccCCcccEEEEcCCCCEEEEEe
Q 000054 2292 -DGTVCTWQLEVGG-RSN-VRP---MESCLCFSSHAMDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2292 -DGtVrVWDl~tgk-~i~-i~p---~~s~~t~~gH~~~V~afSpdGslLATgG 2338 (2548)
...|..++...+. ... ... .........|...-..|.|||.+.++.|
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 2256666664331 000 000 0000001234333356899998877765
No 290
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=89.40 E-value=44 Score=40.39 Aligned_cols=240 Identities=11% Similarity=0.055 Sum_probs=115.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.|.+.+..+++ +.+|.| +...+.|+.-..... . .......+.+|.|++ +. ++.++.+|.|.. ..+
T Consensus 38 ~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~-~-----~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~D 106 (327)
T 2xbg_A 38 ILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTL-V-----LDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTD 106 (327)
T ss_dssp EEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCC-C-----CSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESS
T ss_pred EEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCC-C-----CCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECC
Confidence 588888877877775 456755 333344543333211 0 001124688999976 44 444556664433 222
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
.|+.=... .....+.+....|. +.+++..++++ .++.|. -.......-......+...+..+.+.++
T Consensus 107 gG~tW~~~--~~~~~~~~~~~~i~-~~~~~~~~~~~----~~g~v~--~S~DgG~tW~~~~~~~~~~~~~~~~~~~---- 173 (327)
T 2xbg_A 107 GGQSWSQI--PLDPKLPGSPRLIK-ALGNGSAEMIT----NVGAIY--RTKDSGKNWQALVQEAIGVMRNLNRSPS---- 173 (327)
T ss_dssp TTSSCEEC--CCCTTCSSCEEEEE-EEETTEEEEEE----TTCCEE--EESSTTSSEEEEECSCCCCEEEEEECTT----
T ss_pred CCCCceEC--ccccCCCCCeEEEE-EECCCCEEEEe----CCccEE--EEcCCCCCCEEeecCCCcceEEEEEcCC----
Confidence 23211100 00000111112222 33455566554 355442 2211111122222345567889998887
Q ss_pred CCCCCEEEEEeCCCcE-EEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000054 2382 GSVSPLIVTGGKGGDV-GIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtV-rLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
+.+++.+. +|.+ +-+|- .++.-... .......+..+
T Consensus 174 ---~~~~~~g~-~G~~~~S~d~----gG~tW~~~-----------------------------------~~~~~~~~~~~ 210 (327)
T 2xbg_A 174 ---GEYVAVSS-RGSFYSTWEP----GQTAWEPH-----------------------------------NRTTSRRLHNM 210 (327)
T ss_dssp ---SCEEEEET-TSSEEEEECT----TCSSCEEE-----------------------------------ECCSSSCEEEE
T ss_pred ---CcEEEEEC-CCcEEEEeCC----CCCceeEC-----------------------------------CCCCCCcccee
Confidence 55666554 4444 33331 01111111 02234577889
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEE
Q 000054 2461 STVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLI 2539 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIW 2539 (2548)
++++++++++. +.+|.+++.+...|+.-..+. . +.+. +. ..+.++++.+++ ++.++.+|.| ++
T Consensus 211 ~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~---~------~~~~-~~----~~~~~v~~~~~~~~~~~g~~g~i-~~ 274 (327)
T 2xbg_A 211 GFTPDGRLWMI-VNGGKIAFSDPDNSENWGELL---S------PLRR-NS----VGFLDLAYRTPNEVWLAGGAGAL-LC 274 (327)
T ss_dssp EECTTSCEEEE-ETTTEEEEEETTEEEEECCCB---C------TTSS-CC----SCEEEEEESSSSCEEEEESTTCE-EE
T ss_pred EECCCCCEEEE-eCCceEEEecCCCCCeeEecc---C------Cccc-CC----cceEEEEecCCCEEEEEeCCCeE-EE
Confidence 99999876654 567888776533343322220 0 0000 11 125677888877 6666778877 34
Q ss_pred ECCCC
Q 000054 2540 QLEDY 2544 (2548)
Q Consensus 2540 DL~sg 2544 (2548)
..+.+
T Consensus 275 S~DgG 279 (327)
T 2xbg_A 275 SQDGG 279 (327)
T ss_dssp ESSTT
T ss_pred eCCCC
Confidence 44433
No 291
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=89.38 E-value=13 Score=43.76 Aligned_cols=148 Identities=11% Similarity=0.119 Sum_probs=70.7
Q ss_pred CCCEEEEEE-CC-----CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-----CcEEEE
Q 000054 2230 LRPFFLVGS-SN-----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-----GTVCTW 2298 (2548)
Q Consensus 2230 dG~~LASGS-~D-----GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-----GtVrVW 2298 (2548)
++.+++.|+ .+ ..+.+||..+++-.. +...+. +. .....+. .++..++.|+.+ ..+.+|
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~---~r----~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~ 83 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITR---KR----RYVASVS--LHDRIYVIGGYDGRSRLSSVECL 83 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSS---CC----BSCEEEE--ETTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCCh---hh----ccccEEE--ECCEEEEEcCCCCCccCceEEEE
Confidence 345566665 33 368889988765322 221111 11 1112222 256777777765 368889
Q ss_pred EcCCCc---ccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC--CCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2299 QLEVGG---RSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN--GINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2299 Dl~tgk---~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~--DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
|..+.. -....+. ......|.. ..+ ++++++.||.... ...+.+||+.+.....+..+......-..+.
T Consensus 84 d~~~~~~~~W~~~~~~--p~~r~~~~~--~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 157 (301)
T 2vpj_A 84 DYTADEDGVWYSVAPM--NVRRGLAGA--TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV 157 (301)
T ss_dssp ETTCCTTCCCEEECCC--SSCCBSCEE--EEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE
T ss_pred ECCCCCCCeeEECCCC--CCCccceeE--EEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE
Confidence 987764 2221111 011122221 112 6777777763211 2368889987532222222221111112222
Q ss_pred EccCCCCCCCCCCEEEEEeCC-----CcEEEEeC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKG-----GDVGIHDF 2402 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~D-----GtVrLWDL 2402 (2548)
+ + +.+++.||.+ ..+.+||+
T Consensus 158 ~--~-------~~iyv~GG~~~~~~~~~~~~~d~ 182 (301)
T 2vpj_A 158 A--S-------GVIYCLGGYDGLNILNSVEKYDP 182 (301)
T ss_dssp E--T-------TEEEEECCBCSSCBCCCEEEEET
T ss_pred E--C-------CEEEEECCCCCCcccceEEEEeC
Confidence 2 2 4477777755 35777773
No 292
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=89.21 E-value=17 Score=42.90 Aligned_cols=106 Identities=18% Similarity=0.248 Sum_probs=53.2
Q ss_pred CCEEEEEECC----CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC-----cEEEEEcC
Q 000054 2231 RPFFLVGSSN----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-----TVCTWQLE 2301 (2548)
Q Consensus 2231 G~~LASGS~D----GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG-----tVrVWDl~ 2301 (2548)
+.+++.|+.+ ..+..||..+.+-. .+...+. +...| ..+.. ++..++.|+.++ .+.+||..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~-~~~~~p~---~r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~ 85 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWH-QVAELPS---RRCRA----GMVYM--AGLVFAVGGFNGSLRVRTVDSYDPV 85 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEE-EECCCSS---CCBSC----EEEEE--TTEEEEESCBCSSSBCCCEEEEETT
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEe-EcccCCc---ccccc----eEEEE--CCEEEEEeCcCCCccccceEEECCC
Confidence 3455566543 35888998876532 2222221 11111 12222 566777777553 57888887
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC---CeEEEEECCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG---INVVVWDTLA 2353 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D---GtVrIWDl~t 2353 (2548)
+.+-....+.. .....|... ..++.+++.||.. .+ ..+.+||+.+
T Consensus 86 ~~~W~~~~~~p--~~r~~~~~~----~~~~~iyv~GG~~-~~~~~~~~~~~d~~~ 133 (302)
T 2xn4_A 86 KDQWTSVANMR--DRRSTLGAA----VLNGLLYAVGGFD-GSTGLSSVEAYNIKS 133 (302)
T ss_dssp TTEEEEECCCS--SCCBSCEEE----EETTEEEEEEEEC-SSCEEEEEEEEETTT
T ss_pred CCceeeCCCCC--ccccceEEE----EECCEEEEEcCCC-CCccCceEEEEeCCC
Confidence 66422221110 111222221 1267778887732 11 3577888865
No 293
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=89.10 E-value=18 Score=45.07 Aligned_cols=192 Identities=11% Similarity=0.152 Sum_probs=111.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccE--E-EEcCCCCE--EEEEeccCC--CCeEEEEECCCC
Q 000054 2282 YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDV--S-YITSSGSV--IAAAGHSSN--GINVVVWDTLAP 2354 (2548)
Q Consensus 2282 dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V--~-afSpdGsl--LATgG~SS~--DGtVrIWDl~t~ 2354 (2548)
...+++....++-+.+||+ +|+.+...+ .+..+.| . .+.-.|+. ++.+.. .. +++|.+|++...
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~-------~g~~nnVD~r~~~~l~g~~~dla~as~-R~~~~n~l~vf~iDp~ 109 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN-------TGKLNNVDIRYDFPLNGKKVDIAAASN-RSEGKNTIEIYAIDGK 109 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEEC-------CSCEEEEEEEEEEEETTEEEEEEEEEE-CSTTCCEEEEEEECTT
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEcc-------CCCcccEEEecccccCCceEeEEEEeC-CCCCCCeEEEEEECCC
Confidence 3456777777889999999 565443221 1222222 2 13333443 334332 24 688999977421
Q ss_pred CCCcceeeec------cC-CCeEEEEE--ccCCCCCCCCCC-EEEEEeCCCcEEEEeCCcccc----CceeeeecCCCCC
Q 000054 2355 PTSSRASITC------HE-GGARSISV--FDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIAT----GKTKKHKHSDRGG 2420 (2548)
Q Consensus 2355 ~~k~v~sl~g------Hs-~~VtSLaf--sP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~T----Gk~l~tl~~~~~~ 2420 (2548)
...+..+.. .. ..+..+++ +|.. +. ++++...+|.+..|++..... ++.++++
T Consensus 110 -~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~------g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f------ 176 (355)
T 3amr_A 110 -NGTLQSMTDPDHPIATAINEVYGFTLYHSQKT------GKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF------ 176 (355)
T ss_dssp -TCCEEECSCTTSCEECCCSSCCCEEEEECTTT------CCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE------
T ss_pred -CCceeeccccccCcCCCCCCeeEEEEEecCCC------CcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe------
Confidence 222333311 11 45666776 5642 43 688888899999999642222 2333333
Q ss_pred CCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC-----CCcEEEEeccc
Q 000054 2421 SSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK-----AAQLVYHWSKL 2495 (2548)
Q Consensus 2421 s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~-----Tgell~tL~~~ 2495 (2548)
. -.+.+..++.++....|+.+-+|.-|..+|.+ +++.+..+.
T Consensus 177 ------------------------------~-lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-- 223 (355)
T 3amr_A 177 ------------------------------K-MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-- 223 (355)
T ss_dssp ------------------------------E-CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS--
T ss_pred ------------------------------c-CCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec--
Confidence 1 12467889999999999999998777777755 345555441
Q ss_pred ccccccccCcccCCCCceeecEEEEEE--cCC--e--EEEEECCCcEEEEECC
Q 000054 2496 HERHTFLQPSSRGFGGVVRAGVTDIQV--VSR--G--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLaf--SPd--G--LaSGS~DGtIrIWDL~ 2542 (2548)
. +...+-+..|++ .++ | |+|+-.+.+..+||..
T Consensus 224 -------------~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 224 -------------G-RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp -------------S-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred -------------C-CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 0 111122445555 444 3 5566578899999986
No 294
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=88.63 E-value=56 Score=40.57 Aligned_cols=207 Identities=13% Similarity=0.160 Sum_probs=125.0
Q ss_pred cCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccc
Q 000054 2228 HPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2228 SPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
||..+.+|.-. ..+++|+|+++.+.++.+.. ...|.--+|-.+.. |+-.. +..|.-|+++... .
T Consensus 75 nP~~~ViALra-g~~LQiFnletK~klks~~~-----------~e~VvfWkWis~~~-L~lVT-~taVyHWs~~~~s-~- 138 (365)
T 2xzh_A 75 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-----------TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGES-Q- 138 (365)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-----------SSCEEEEEECSSSE-EEEEE-SSEEEEEESSTTC-C-
T ss_pred CCCccEEEEec-CCeEEEechHHhhhhcceec-----------CCccEEEEecCCCe-EEEEc-CCcEEEEcccCCC-C-
Confidence 67778777655 67899999999988888643 25677778865443 33332 4689999997532 1
Q ss_pred cccCccceeccCCc----ccEEE--EcCCCCEEEEEeccCC----CCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2308 VRPMESCLCFSSHA----MDVSY--ITSSGSVIAAAGHSSN----GINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~----~~V~a--fSpdGslLATgG~SS~----DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+.+.+..|. ..|.. .+++.+.++..|-+.. .|.+.+|..+. +.-+.+.||...-..+....+
T Consensus 139 -----P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er---~~sQ~ieGhaa~F~~~~~~g~ 210 (365)
T 2xzh_A 139 -----PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---KVSQPIEGHAASFAQFKMEGN 210 (365)
T ss_dssp -----CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT---TEEEEECCSEEEEEEECCTTC
T ss_pred -----CceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc---cccceeeeeeeeeEEEecCCC
Confidence 122233332 34443 6788888877664222 36788998863 456777788765555543322
Q ss_pred CCCCCCCCCEEEEEeC---CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc---c
Q 000054 2378 DLGSGSVSPLIVTGGK---GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP---K 2451 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~---DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~---~ 2451 (2548)
. ....+++-+.. .+.+++-++.....+... + .-+..+++ .
T Consensus 211 ~----~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~--f----------------------------~kk~vdi~fppe 256 (365)
T 2xzh_A 211 A----EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP--F----------------------------PKKAVDVFFPPE 256 (365)
T ss_dssp S----SCEEEEEEEEEETTEEEEEEEECSSCCTTCCC--C----------------------------CCEEEEECCCTT
T ss_pred C----CCceEEEEEEecCCCcEEEEEEcCCCCCCCCC--c----------------------------ccccceeeCCcc
Confidence 1 11224443333 256777775321011100 0 01112221 2
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
+-.+---++..++.-..++.-+.-|.|++||+.+|.++..-
T Consensus 257 a~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 257 AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 22334457888888888999999999999999999998744
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=88.31 E-value=3.3 Score=56.08 Aligned_cols=222 Identities=13% Similarity=0.009 Sum_probs=110.5
Q ss_pred CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEEcCCC----cccccccCccc
Q 000054 2240 NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCTWQLEVG----GRSNVRPMESC 2314 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtVrVWDl~tg----k~i~i~p~~s~ 2314 (2548)
.+.|+..++.+.+....+. ....+..|+|++.+..|+.+. ..+.|..+++... ....+..
T Consensus 385 ~~~I~~id~~~~~~~~~~~-----------~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~---- 449 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP-----------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---- 449 (699)
T ss_dssp TTC-CEECTTSCCEECCSC-----------CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC----
T ss_pred ccceEEEeCCCCcceeeec-----------cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe----
Confidence 3567777776654332221 124567889998776666654 4578999998751 1111000
Q ss_pred eeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCCCeEEEEEccCCCCCCCCCCEEEEEeC
Q 000054 2315 LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGGARSISVFDNDLGSGSVSPLIVTGGK 2393 (2548)
Q Consensus 2315 ~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~ 2393 (2548)
..+ ..... .++.+.+..|+.+. ...+.|.+.++.. ..+..+ .........|++.|.. +.++++-..
T Consensus 450 ~~~-~~P~g-lavD~~~g~LY~tD--~~~~~I~v~d~dg---~~~~~l~~~~~~~P~giavDp~~------g~ly~td~~ 516 (699)
T 1n7d_A 450 RDI-QAPDG-LAVDWIHSNIYWTD--SVLGTVSVADTKG---VKRKTLFREQGSKPRAIVVDPVH------GFMYWTDWG 516 (699)
T ss_dssp SCC---CCC-EECCCSSSBCEECC--TTTSCEEEEBSSS---CCEEEECCCSSCCCCCEECCSSS------SCCEECCCS
T ss_pred CCC-CCcce-EEEEeeCCcEEEEe--ccCCeEEEEecCC---CceEEEEeCCCCCcceEEEccCC------CcEEEcccC
Confidence 000 11112 24554444444332 2567898888763 222222 2222345667777763 444444322
Q ss_pred C-CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCC-EEEE
Q 000054 2394 G-GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTS-LFLT 2471 (2548)
Q Consensus 2394 D-GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~-~LaS 2471 (2548)
. +.|..+++. |.....+ ....-.....|+++|++. ++++
T Consensus 517 ~~~~I~~~~~d----G~~~~~l-----------------------------------~~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 517 TPAKIKKGGLN----GVDIYSL-----------------------------------VTENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp SSCCEEBCCSS----SCCCCEE-----------------------------------SCSSCSSCCCEEECTTTCCEEEE
T ss_pred CCCeEEEEeCC----CCCeeEE-----------------------------------EeCCCCCccEEEEeccCCEEEEE
Confidence 2 556555532 1111111 001122345789998754 4455
Q ss_pred EeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2472 GSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2472 GS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
-+..+.|.++|+..... .++... .. ..+|. ..|++..++ +++....+.|..++..++
T Consensus 558 D~~~~~I~~~d~dG~~~-~~~~~~--~~------~~~~P-------~glavd~~~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNR-KTILED--EK------RLAHP-------FSLAVFEDKVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp ETTTTEEEEECSSSSCC-EEECCC--SS------SCSSC-------CCCEEETTEEEEECSTTTCEEEEETTTE
T ss_pred ecCCCeEEEEccCCCce-EEEEec--CC------cCCCc-------eEeEEECCEEEEEeCCCCeEEEEEccCC
Confidence 45677899999864332 222100 00 01111 123555666 556666788888886544
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=88.06 E-value=5 Score=49.63 Aligned_cols=162 Identities=11% Similarity=0.088 Sum_probs=94.1
Q ss_pred EEEEEccCCCEEEEEe-CCCcEEEEEcCCCcccccccCccceeccC----CcccEEEE---cCCCCEEEEEec-------
Q 000054 2275 SALQFDHYGHRFASAA-LDGTVCTWQLEVGGRSNVRPMESCLCFSS----HAMDVSYI---TSSGSVIAAAGH------- 2339 (2548)
Q Consensus 2275 tsVaFSPdG~~LaSGS-~DGtVrVWDl~tgk~i~i~p~~s~~t~~g----H~~~V~af---SpdGslLATgG~------- 2339 (2548)
-+++|++....|..++ ..|+|..||...+....+ ... .....+ |...+ .+ .++++++++...
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~-~~s~~g~~~~~~sGl-~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID-GASSNGDGEQQMSGL-SLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT-TTCCSSCCSEEEEEE-EESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC-CccccCCCcceeeEE-EEeccCCCCcEEEEEccccccccc
Confidence 4678988555555555 799999999975543222 110 000001 11122 25 577777775420
Q ss_pred ---cCCCCeEEEEECC---CCCCCccee--eeccC-----------CCeEEEEEccCCCCCCCCCCEEEEEeCC-CcEEE
Q 000054 2340 ---SSNGINVVVWDTL---APPTSSRAS--ITCHE-----------GGARSISVFDNDLGSGSVSPLIVTGGKG-GDVGI 2399 (2548)
Q Consensus 2340 ---SS~DGtVrIWDl~---t~~~k~v~s--l~gHs-----------~~VtSLafsP~dlg~gs~g~lLVSGS~D-GtVrL 2399 (2548)
.+.++.|..+|+. + ++.+.. +.... .....++..++ |+..++++.. +.|..
T Consensus 93 g~~~~g~~~v~~~Dl~~~~t--g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~-------GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSEN--SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD-------GNSYVAFALGMPAIAR 163 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTT--CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT-------SCEEEEEEESSCEEEE
T ss_pred ccccCCCCEEEEEcCCcCCC--CCEEEEecCccccccccccccccccCCceeEECCC-------CCEEEeCCCCCCeEEE
Confidence 0126789999987 4 333322 22211 24788888887 7788888877 77766
Q ss_pred EeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc---cCCCCCEEEEEEeCCCCEEEEEeCCC
Q 000054 2400 HDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP---KAHLGSVTRISTVPNTSLFLTGSKDG 2476 (2548)
Q Consensus 2400 WDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~---~gH~~~VtsLafSPdG~~LaSGS~DG 2476 (2548)
.|. .|+.+.. |... .......+.++++|+|..|++...+|
T Consensus 164 V~p----dG~~~~~---------------------------------~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g 206 (334)
T 2p9w_A 164 VSA----DGKTVST---------------------------------FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPR 206 (334)
T ss_dssp ECT----TSCCEEE---------------------------------EEECCCCSSSCCSCSEEEEETTTTEEEEESSSS
T ss_pred EeC----CCCEEee---------------------------------eeecCCCcccccCcceEEEeCCCCEEEEEcCCC
Confidence 662 1222211 1110 11123456888999998888876688
Q ss_pred cEEEEECCC
Q 000054 2477 DVKLWDAKA 2485 (2548)
Q Consensus 2477 tIrIWDl~T 2485 (2548)
.+..+|+.+
T Consensus 207 ~L~~fD~~~ 215 (334)
T 2p9w_A 207 ALTAFDVSK 215 (334)
T ss_dssp SEEEEECSS
T ss_pred eEEEEcCCC
Confidence 899999874
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=87.64 E-value=45 Score=45.84 Aligned_cols=155 Identities=10% Similarity=-0.029 Sum_probs=86.7
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCC----ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcE
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKD----KATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg----~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtV 2295 (2548)
+.+++|++.+. ++++-...+.|+.+++... .....+.. .......|++.+.+..|+.+ ...+.|
T Consensus 426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~----------~l~~P~GLAvD~~~~~LY~tD~~~~~I 495 (791)
T 3m0c_C 426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR----------DIQAPDGLAVDWIHSNIYWTDSVLGTV 495 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS----------SCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec----------CCCCcceeeeeecCCcEEEEecCCCeE
Confidence 47888888544 5556566788888888753 22222210 12456789998877555544 566899
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCCCeEEEEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGGARSISV 2374 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~~VtSLaf 2374 (2548)
.+.+++......+. ........-.++.|.+..|+.+... ..+.|...++.. ..+..+ ...-...+.|++
T Consensus 496 ~v~~ldG~~~~~l~------~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG---~~~~~lv~~~l~~P~GLav 565 (791)
T 3m0c_C 496 SVADTKGVKRKTLF------RENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG---VDIYSLVTENIQWPNGITL 565 (791)
T ss_dssp EEEETTSSSEEEEE------ECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS---CCEEEEECSSCSCEEEEEE
T ss_pred EEEeCCCCeEEEEE------eCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCC---CceEEEEeCCCCCceEEEE
Confidence 99998744321110 0000111122477765555544311 236788888753 333333 223357888999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeC
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDL 2402 (2548)
.+.. +.+.++-...+.|...|+
T Consensus 566 D~~~------~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 566 DLLS------GRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp ETTT------TEEEEEETTTTEEEEEET
T ss_pred ecCC------CeEEEEeCCCCcEEEEec
Confidence 8773 555555556677888884
No 298
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=87.50 E-value=26 Score=50.24 Aligned_cols=175 Identities=9% Similarity=0.060 Sum_probs=94.5
Q ss_pred eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEE---EccC-CCEEEEEe----------CCCcEEEEEcCCCcccc
Q 000054 2242 HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQ---FDHY-GHRFASAA----------LDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2242 sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVa---FSPd-G~~LaSGS----------~DGtVrVWDl~tgk~i~ 2307 (2548)
.|++.|..+.+.+..+...+ ...+.+++ |..+ ..++++|. ..|.|.++++..++ ..
T Consensus 808 ~i~lidp~t~~~i~~~~l~~---------nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~ 877 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQ---------NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQ 877 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCT---------TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EE
T ss_pred EEEEEeCCCCeEEEEEeCCC---------CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EE
Confidence 36677766666665554322 13455554 3332 46788775 34789999987332 11
Q ss_pred cccCccceeccCCcccEEEEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe--EEEEEccCCCCCCCC
Q 000054 2308 VRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA--RSISVFDNDLGSGSV 2384 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V--tSLafsP~dlg~gs~ 2384 (2548)
.. ..... .+.|.++.+ +|+++++. +++|++||+.. .+.+..-..+-..| ..+...
T Consensus 878 lv---~~~~v---~g~v~al~~~~g~Lla~i-----g~~l~vy~l~~--~~~L~~~~~~~~~i~~~~l~~~--------- 935 (1158)
T 3ei3_A 878 TV---AEKEV---KGAVYSMVEFNGKLLASI-----NSTVRLYEWTT--EKELRTECNHYNNIMALYLKTK--------- 935 (1158)
T ss_dssp EE---EEEEE---SSCEEEEEEETTEEEEEE-----TTEEEEEEECT--TSCEEEEEEECCCSCEEEEEEE---------
T ss_pred EE---EEEEc---CCcCEEEeeeCCEEEEEc-----CCEEEEEECCC--CceEEEEeeccccEEEEEEecc---------
Confidence 10 11112 234554332 45555543 58999999964 22222111111112 234332
Q ss_pred CCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC
Q 000054 2385 SPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP 2464 (2548)
Q Consensus 2385 g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP 2464 (2548)
+++++.|..-..|.+.-.+. .. ..+..+ - ..-+..+++++.+-.
T Consensus 936 ~~~I~vgD~~~Sv~~~~y~~-~~-~~L~~~--------------------------------a--~D~~~~~vta~~~ld 979 (1158)
T 3ei3_A 936 GDFILVGDLMRSVLLLAYKP-ME-GNFEEI--------------------------------A--RDFNPNWMSAVEILD 979 (1158)
T ss_dssp TTEEEEEESSBCEEEEEEET-TT-TEEEEE--------------------------------E--ECCSCBCEEEEEEEE
T ss_pred CCEEEEEEhhheEEEEEEEc-CC-CeEEEE--------------------------------E--eecccccEEEEEEEc
Confidence 45888888877777765431 11 111111 0 022456788888865
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 000054 2465 NTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~T 2485 (2548)
+ ..++.+..+|.|.+.....
T Consensus 980 ~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 980 D-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp T-TEEEEEETTSEEEEEEECT
T ss_pred c-CcEEEEcCCCcEEEEecCC
Confidence 5 4677788999999987653
No 299
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=86.74 E-value=84 Score=40.47 Aligned_cols=208 Identities=13% Similarity=0.157 Sum_probs=125.9
Q ss_pred EcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccc
Q 000054 2227 SHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2227 fSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i 2306 (2548)
-||..+.+|.-. ..++.|+|+++.+.++.+.. ...|.--+|-.+.. |+-.+ +..|.-|+++... .
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~-----------~e~VvfWkWis~~~-l~lVT-~taVyHWsi~~~s-~ 137 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-----------TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGES-Q 137 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-----------SSCCCEEEEEETTE-EEEEC-SSEEEEEESSSSC-C
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceec-----------CCCceEEEecCCCe-EEEEc-CCeeEEecccCCC-C
Confidence 357777777654 67899999999988887643 14566667754433 33332 5689999997522 1
Q ss_pred ccccCccceeccCCc----ccEEE--EcCCCCEEEEEeccCC----CCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2307 NVRPMESCLCFSSHA----MDVSY--ITSSGSVIAAAGHSSN----GINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2307 ~i~p~~s~~t~~gH~----~~V~a--fSpdGslLATgG~SS~----DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
+.+.+..|. ..|.. .+++.+.++..|-+.. .|.+.+|..+. +.-+.+.||......+....
T Consensus 138 ------P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er---~~sQ~ieGhaa~F~~~~~~g 208 (494)
T 1bpo_A 138 ------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---KVSQPIEGHAASFAQFKMEG 208 (494)
T ss_dssp ------CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT---CCEEEECCSEEEEEEEECTT
T ss_pred ------chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc---cccchheeeeeeeEEEecCC
Confidence 122233332 34443 6788888887664322 36788999863 45677788877666665432
Q ss_pred CCCCCCCCCCEEEEEeCC---CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc---
Q 000054 2377 NDLGSGSVSPLIVTGGKG---GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP--- 2450 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~D---GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~--- 2450 (2548)
+. ....+++-+... +.++|-++.....+... + .-+..+++
T Consensus 209 ~~----~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~--f----------------------------~kk~vdv~fpp 254 (494)
T 1bpo_A 209 NA----EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP--F----------------------------PKKAVDVFFPP 254 (494)
T ss_dssp CS----SEEEEEEEEECSTTCCEEEEEECSCCCTTCCC--C----------------------------CCEEEECCCCT
T ss_pred CC----CCceEEEEEEecCCCcEEEEEEcCCCccCCCC--c----------------------------cceeeeeeCCc
Confidence 21 012244444433 67777775321011100 0 00112221
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
..-.+---++..++.-..++.-+.-|.|+++|+.++.++..-
T Consensus 255 e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence 122334457888998888999999999999999999998744
No 300
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=86.22 E-value=22 Score=45.41 Aligned_cols=167 Identities=12% Similarity=0.166 Sum_probs=98.0
Q ss_pred EEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc----CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEE
Q 000054 2324 VSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH----EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGI 2399 (2548)
Q Consensus 2324 V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH----s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrL 2399 (2548)
......+|..++.+ .++.||.-++... ...+.+... -+.|..+..+|+ |++|+..+ +..|.|
T Consensus 25 ~~~~~~n~t~i~~a----~~n~iR~~~i~~~--~~Yk~L~~~~~i~f~~i~qlvlSps-------G~lLAl~g-~~~V~V 90 (452)
T 3pbp_A 25 YIFSSQNGTRIVFI----QDNIIRWYNVLTD--SLYHSLNFSRHLVLDDTFHVISSTS-------GDLLCLFN-DNEIFV 90 (452)
T ss_dssp EEEEETTTTEEEEE----ETTEEEEEETTTC--SSCEEEECTTTCCCCTTCEEEECTT-------SSEEEEEC-SSEEEE
T ss_pred EEEEEcCCCEEEEE----ECCEEEEEECCCC--CcceEEecCcccccCceeEEEECCC-------CCEEEEec-CCeEEE
Confidence 33445677777776 5789998888742 234444432 235788999998 78888876 557888
Q ss_pred EeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc---CCCCCEEEEEEeCC---CCEEEEEe
Q 000054 2400 HDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK---AHLGSVTRISTVPN---TSLFLTGS 2473 (2548)
Q Consensus 2400 WDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~---gH~~~VtsLafSPd---G~~LaSGS 2473 (2548)
-.+. .+..... . ++ ....-.++-|++-. ....+|..+.|||- +..|++-.
T Consensus 91 v~LP---~~~~~~~-------~-----------~~---~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 91 MEVP---WGYSNVE-------D-----------VS---IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp EECC---TTCSCCC-------C-----------HH---HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred EEec---CccccCc-------c-----------cc---cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 8853 1110000 0 00 00000122233211 13678999999994 57999999
Q ss_pred CCCcEEEEECCCC--cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEE--EECCCcEEE
Q 000054 2474 KDGDVKLWDAKAA--QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS--CGGDGSVKL 2538 (2548)
Q Consensus 2474 ~DGtIrIWDl~Tg--ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS--GS~DGtIrI 2538 (2548)
.|+.|++||+... ++. .++. .... .|-...+ .-|.+++|.++| |.. .+.+|.|+-
T Consensus 147 sD~~Ir~yDl~~s~~~P~-~L~k--~~~~------fg~d~~~-~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPI-VLNK--PNNS------FGLDARV-NDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp TTSCEEEEETTCTTSCCE-EESC--CCSE------EESCSSC-CCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred cCCEEEEEEcccCCCCCc-chhc--cccc------cCCCccc-ceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 9999999999852 233 4421 1111 1323333 346788999988 444 447777653
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=86.22 E-value=14 Score=45.77 Aligned_cols=164 Identities=13% Similarity=0.072 Sum_probs=94.2
Q ss_pred EEEEEcCCCCEEEEEE-CCCeEEEEEcCCCceeEEEeccCCCCCCCCC-CCCCeEEEEE---ccCCCEEEEEe-------
Q 000054 2223 RAFSSHPLRPFFLVGS-SNTHIYLWEFGKDKATATYGVLPAANVPPPY-ALASISALQF---DHYGHRFASAA------- 2290 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS-~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~-H~~~VtsVaF---SPdG~~LaSGS------- 2290 (2548)
-+..|++....+..++ ..++|..||...+..... ..++- ...+ ....+..|.| .|+++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~--~~~~~--s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV--VIDGA--SSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE--CCTTT--CCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE--ecCCc--cccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3567878555555555 789999999876644333 12210 0000 0123689999 68877777544
Q ss_pred ------CCCcEEEEEcC---CCcccccccCccce----eccCCcc-cE--EEEcCCCCEEEEEeccCCC-CeEEEEECCC
Q 000054 2291 ------LDGTVCTWQLE---VGGRSNVRPMESCL----CFSSHAM-DV--SYITSSGSVIAAAGHSSNG-INVVVWDTLA 2353 (2548)
Q Consensus 2291 ------~DGtVrVWDl~---tgk~i~i~p~~s~~----t~~gH~~-~V--~afSpdGslLATgG~SS~D-GtVrIWDl~t 2353 (2548)
.+..|..+|+. +++........... ...+... .. ..+.++|+..+++. .. +.|...+..
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s---~~~~~I~rV~pd- 167 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA---LGMPAIARVSAD- 167 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE---ESSCEEEEECTT-
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC---CCCCeEEEEeCC-
Confidence 26789999998 66543211100000 0001111 11 13788999888865 45 565555554
Q ss_pred CCCCcceeee------ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCC
Q 000054 2354 PPTSSRASIT------CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2354 ~~~k~v~sl~------gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR 2403 (2548)
++.+..+. ...-+.+.|+++|+ +..|++...+|.+..+|++
T Consensus 168 --G~~~~~~~~~~~~~~~~~G~nGIv~~pd-------g~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 168 --GKTVSTFAWESGNGGQRPGYSGITFDPH-------SNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp --SCCEEEEEECCCCSSSCCSCSEEEEETT-------TTEEEEESSSSSEEEEECS
T ss_pred --CCEEeeeeecCCCcccccCcceEEEeCC-------CCEEEEEcCCCeEEEEcCC
Confidence 22222221 11234678999998 6677776669999999965
No 302
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=85.95 E-value=11 Score=47.84 Aligned_cols=116 Identities=13% Similarity=0.047 Sum_probs=65.4
Q ss_pred CCeEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC--CCeEEE
Q 000054 2272 ASISALQFDH-YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN--GINVVV 2348 (2548)
Q Consensus 2272 ~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~--DGtVrI 2348 (2548)
.....|+++| ++..|+.+...+.|+.+|.+.+....+.. ......-.+++++|+.++++..... ...+..
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~ 209 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-------GLSKVRTICWTHEADSMIITNDQNNNDRPNNYI 209 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-------CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-------CCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence 4567899998 45667777666889999987654221110 1111122358899996666542100 113444
Q ss_pred EECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeC
Q 000054 2349 WDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDL 2402 (2548)
.+... .......+. .......++++|.+ +.++++-..++.|..+|.
T Consensus 210 ~~~~g-~~~~~~~l~-~~~~p~giavdp~~------g~lyv~d~~~~~V~~~~~ 255 (430)
T 3tc9_A 210 LTRES-GFKVITELT-KGQNCNGAETHPIN------GELYFNSWNAGQVFRYDF 255 (430)
T ss_dssp EEGGG-TSCSEEEEE-ECSSCCCEEECTTT------CCEEEEETTTTEEEEEET
T ss_pred EeCCC-ceeeeeeec-cCCCceEEEEeCCC------CEEEEEECCCCEEEEEEC
Confidence 44322 111112222 23345677888853 667777777888999994
No 303
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=85.44 E-value=38 Score=43.07 Aligned_cols=161 Identities=14% Similarity=0.086 Sum_probs=85.8
Q ss_pred CCeEEEEEccC--CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCC-eEEE
Q 000054 2272 ASISALQFDHY--GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI-NVVV 2348 (2548)
Q Consensus 2272 ~~VtsVaFSPd--G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DG-tVrI 2348 (2548)
.....|+|+|+ +..|+.+...+.|+.+|..++....+.. ......-.+++++|+++++......+. .+..
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-------~~~~P~giavd~dG~lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-------NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-------CCSCEEEEEECTTCCEEEEECCSCTTSEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-------CCCCccEEEECCCCCEEEEcCCCCcccceEEE
Confidence 45678999984 4556666655899999987664322110 111112235889999555431000011 2333
Q ss_pred EECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000054 2349 WDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
.+.... ......+ ..-.....+++.|.+ +.+.++-..++.|+.+| ..++.....+.
T Consensus 212 ~~~~~~-~~~~~~~-~~~~~P~giavd~~~------G~lyv~d~~~~~V~~~d---~~~g~~~~~~~------------- 267 (433)
T 4hw6_A 212 FTRASG-FTERLSL-CNARGAKTCAVHPQN------GKIYYTRYHHAMISSYD---PATGTLTEEEV------------- 267 (433)
T ss_dssp ECGGGT-TCCEEEE-EECSSBCCCEECTTT------CCEEECBTTCSEEEEEC---TTTCCEEEEEE-------------
T ss_pred EECCCC-eeccccc-cccCCCCEEEEeCCC------CeEEEEECCCCEEEEEE---CCCCeEEEEEe-------------
Confidence 332210 1101111 123445667777743 66776766778888888 34444322220
Q ss_pred ccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEECC
Q 000054 2429 ADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTG-SKDGDVKLWDAK 2484 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSG-S~DGtIrIWDl~ 2484 (2548)
. .+....-..++|+|++++|+.+ ...+.|+.++..
T Consensus 268 -------------------~--~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 268 -------------------M--MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp -------------------E--CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred -------------------c--cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 0 0111122469999999855444 556789998865
No 304
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=85.05 E-value=64 Score=38.31 Aligned_cols=103 Identities=11% Similarity=0.136 Sum_probs=51.6
Q ss_pred EEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC----CC-------cEEEEEcCC
Q 000054 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL----DG-------TVCTWQLEV 2302 (2548)
Q Consensus 2234 LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~----DG-------tVrVWDl~t 2302 (2548)
++.|+ ..+.+||..+++-.. ...+. + ...........++..++.|+. ++ .+.+||..+
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~-----p--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~ 76 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSS-----Q--VPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD 76 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCC-----C--SCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCC-----C--CCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCC
Confidence 44555 579999998877433 21111 0 012222233347777888874 11 266788876
Q ss_pred CcccccccCccceeccCCcccEEEEcCCCCEEEEEecc-----CCCCeEEEEECCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS-----SNGINVVVWDTLA 2353 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~S-----S~DGtVrIWDl~t 2353 (2548)
++-....+.. .....|.. ..+ ++.+++.||.. ..-..+.+||..+
T Consensus 77 ~~W~~~~~~p--~~r~~~~~--~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~ 126 (315)
T 4asc_A 77 SEWLGMPPLP--SPRCLFGL--GEA--LNSIYVVGGREIKDGERCLDSVMCYDRLS 126 (315)
T ss_dssp TEEEECCCBS--SCEESCEE--EEE--TTEEEEECCEESSTTCCBCCCEEEEETTT
T ss_pred CeEEECCCCC--cchhceeE--EEE--CCEEEEEeCCcCCCCCcccceEEEECCCC
Confidence 5422211110 11122221 112 66777777631 1124588899875
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=84.80 E-value=94 Score=40.00 Aligned_cols=129 Identities=11% Similarity=0.140 Sum_probs=75.3
Q ss_pred CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceecc
Q 000054 2239 SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFS 2318 (2548)
Q Consensus 2239 ~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~ 2318 (2548)
.+.+|.|-|+.++..+..-.. .--+.-.+|..+.+|.=. ..++.++|+++..+... +.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi-------------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks--------~~ 103 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPI-------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA--------HT 103 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEEC-------------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEE--------EE
T ss_pred CCCeEEEEECCCCCcceeccc-------------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcc--------ee
Confidence 444789999987665433111 111334566666555544 68999999998754432 22
Q ss_pred CCcccEEEEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC----CeEEEEEccCCCCCCCCCCEEEEEe-
Q 000054 2319 SHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG----GARSISVFDNDLGSGSVSPLIVTGG- 2392 (2548)
Q Consensus 2319 gH~~~V~afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~----~VtSLafsP~dlg~gs~g~lLVSGS- 2392 (2548)
-.. +|.+|.+ +.+.++.. .+..|+.|++.. +..++..+..|.. .|..-..+++ .++++..|
T Consensus 104 ~~e-~VvfWkWis~~~l~lV----T~taVyHWsi~~-~s~P~kvFdR~~~L~~~QIInY~~d~~-------~kW~~l~GI 170 (494)
T 1bpo_A 104 MTD-DVTFWKWISLNTVALV----TDNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAK-------QKWLLLTGI 170 (494)
T ss_dssp CSS-CCCEEEEEETTEEEEE----CSSEEEEEESSS-SCCCEEEEECCGGGTTCEEEEEEECTT-------SSEEEEEEE
T ss_pred cCC-CceEEEecCCCeEEEE----cCCeeEEecccC-CCCchhheecchhcccceEEEEEECCC-------CCeEEEEee
Confidence 222 3443221 33566665 378999999975 3567777776542 3444444554 56655443
Q ss_pred ------CCCcEEEEeC
Q 000054 2393 ------KGGDVGIHDF 2402 (2548)
Q Consensus 2393 ------~DGtVrLWDL 2402 (2548)
-.|.+.+|..
T Consensus 171 ~~~~~~v~G~mQLYS~ 186 (494)
T 1bpo_A 171 SAQQNRVVGAMQLYSV 186 (494)
T ss_dssp EEETTEEEEEEEEEES
T ss_pred cccCCcccceEEEeec
Confidence 2466777774
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=84.54 E-value=2.4 Score=57.38 Aligned_cols=207 Identities=11% Similarity=0.022 Sum_probs=108.4
Q ss_pred EEEEEcCCCCEEEEE-ECCCeEEEEEcCCC----ceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEE
Q 000054 2223 RAFSSHPLRPFFLVG-SSNTHIYLWEFGKD----KATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVC 2296 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASG-S~DGsVrLWDl~tg----~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVr 2296 (2548)
.+++|++.+..|..+ ...+.|+.+++.+. .....+ . ........|++.+. ++.+++-...+.|.
T Consensus 409 ~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i---~-------~~~~~P~glavD~~~g~LY~tD~~~~~I~ 478 (699)
T 1n7d_A 409 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---S-------RDIQAPDGLAVDWIHSNIYWTDSVLGTVS 478 (699)
T ss_dssp CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC---C-------SCC--CCCEECCCSSSBCEECCTTTSCEE
T ss_pred EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE---e-------CCCCCcceEEEEeeCCcEEEEeccCCeEE
Confidence 567788866655544 45678888887751 111111 0 01123456788764 44444445668899
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCCCeEEEEEc
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGGARSISVF 2375 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~~VtSLafs 2375 (2548)
+.++.......+... -......+ ++.|.+..|+.+... ..+.|...++.. .....+ ...-...+.|++.
T Consensus 479 v~d~dg~~~~~l~~~-----~~~~P~gi-avDp~~g~ly~td~~-~~~~I~~~~~dG---~~~~~l~~~~l~~PnGlavd 548 (699)
T 1n7d_A 479 VADTKGVKRKTLFRE-----QGSKPRAI-VVDPVHGFMYWTDWG-TPAKIKKGGLNG---VDIYSLVTENIQWPNGITLD 548 (699)
T ss_dssp EEBSSSCCEEEECCC-----SSCCCCCE-ECCSSSSCCEECCCS-SSCCEEBCCSSS---CCCCEESCSSCSSCCCEEEC
T ss_pred EEecCCCceEEEEeC-----CCCCcceE-EEccCCCcEEEcccC-CCCeEEEEeCCC---CCeeEEEeCCCCCccEEEEe
Confidence 998875432111100 00112222 467755444443210 226677777653 222222 1222456778998
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
|.+ +.+.++-+..+.|..+|+. +...+.+... .+...
T Consensus 549 ~~~------~~LY~aD~~~~~I~~~d~d----G~~~~~~~~~---------------------------------~~~~~ 585 (699)
T 1n7d_A 549 LLS------GRLYWVDSKLHSISSIDVN----GGNRKTILED---------------------------------EKRLA 585 (699)
T ss_dssp TTT------CCEEEEETTTTEEEEECSS----SSCCEEECCC---------------------------------SSSCS
T ss_pred ccC------CEEEEEecCCCeEEEEccC----CCceEEEEec---------------------------------CCcCC
Confidence 874 6677777778889999853 2222222000 00111
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
....|++..+ .++++....+.|..+|..+|+.+.++.
T Consensus 586 ~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 586 HPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp SCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 2234445443 455555567889999988888877663
No 307
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=84.11 E-value=21 Score=45.55 Aligned_cols=156 Identities=12% Similarity=0.084 Sum_probs=90.3
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccC--CcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCC-
Q 000054 2281 HYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS--HAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPP- 2355 (2548)
Q Consensus 2281 PdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~g--H~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~- 2355 (2548)
.+|..++.+- ++.||.-++..+..-+ ... ... ....+ ...+|+|+++|..| +..|.|-.+-.+.
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk-----~L~-~~~~i~f~~i~qlvlSpsG~lLAl~g----~~~V~Vv~LP~~~~ 98 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYH-----SLN-FSRHLVLDDTFHVISSTSGDLLCLFN----DNEIFVMEVPWGYS 98 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCE-----EEE-CTTTCCCCTTCEEEECTTSSEEEEEC----SSEEEEEECCTTCS
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcce-----EEe-cCcccccCceeEEEECCCCCEEEEec----CCeEEEEEecCccc
Confidence 3555555543 3677777776432111 111 111 01122 34899999999985 7899998875211
Q ss_pred --C-----Ccc--eeeec------cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC
Q 000054 2356 --T-----SSR--ASITC------HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG 2420 (2548)
Q Consensus 2356 --~-----k~v--~sl~g------Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~ 2420 (2548)
. ..+ ..+.- ...+|..+.|||-. ..+..|++-..|+.|++||+.. ...+.. .+...
T Consensus 99 ~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~----~~ds~LVVLtsD~~Ir~yDl~~-s~~~P~-~L~k~--- 169 (452)
T 3pbp_A 99 NVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKS----YRDSCIVVLKEDDTITMFDILN-SQEKPI-VLNKP--- 169 (452)
T ss_dssp CCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTB----GGGCEEEEEETTSCEEEEETTC-TTSCCE-EESCC---
T ss_pred cCcccccccccceeEEEcCCcccCCCCceeEEEecccc----CCCCeEEEEecCCEEEEEEccc-CCCCCc-chhcc---
Confidence 0 011 12221 24679999999983 4467999999999999999753 222222 22100
Q ss_pred CCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEe--CCCcEEE
Q 000054 2421 SSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGS--KDGDVKL 2480 (2548)
Q Consensus 2421 s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS--~DGtIrI 2480 (2548)
. . .|. .......|.+++|..++-.|...+ ..|.|+-
T Consensus 170 ~----~--~fg------------------~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 170 N----N--SFG------------------LDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp C----S--EEE------------------SCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred c----c--ccC------------------CCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 0 0 000 023446788999998876666655 7788865
No 308
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=83.98 E-value=13 Score=44.08 Aligned_cols=148 Identities=22% Similarity=0.233 Sum_probs=72.9
Q ss_pred CCCEEEEEECC-----CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC-----cEEEEE
Q 000054 2230 LRPFFLVGSSN-----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-----TVCTWQ 2299 (2548)
Q Consensus 2230 dG~~LASGS~D-----GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG-----tVrVWD 2299 (2548)
++.+++.|+.+ ..+.+||..+.+-... ...+. +...| ..+.+ ++..++.|+.++ .+.+||
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~---~r~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~d 130 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV-ANMRD---RRSTL----GAAVL--NGLLYAVGGFDGSTGLSSVEAYN 130 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE-CCCSS---CCBSC----EEEEE--TTEEEEEEEECSSCEEEEEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeC-CCCCc---cccce----EEEEE--CCEEEEEcCCCCCccCceEEEEe
Confidence 56677777654 3588899887653322 22111 11111 22222 577777787664 567788
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC----CCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN----GINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~----DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
..+.+-....+.. .....|.. ...++++++.||.... -..+.+||+.+.....+..+.........+.+
T Consensus 131 ~~~~~W~~~~~~p--~~r~~~~~----~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 203 (302)
T 2xn4_A 131 IKSNEWFHVAPMN--TRRSSVGV----GVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL- 203 (302)
T ss_dssp TTTTEEEEECCCS--SCCBSCEE----EEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred CCCCeEeecCCCC--CcccCceE----EEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-
Confidence 7765422221110 11122221 1126677777764211 24588899875322222222211111222222
Q ss_pred cCCCCCCCCCCEEEEEeCCC-----cEEEEeC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGG-----DVGIHDF 2402 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DG-----tVrLWDL 2402 (2548)
+ +.+++.||.++ .+.+||+
T Consensus 204 -~-------~~iyv~GG~~~~~~~~~~~~yd~ 227 (302)
T 2xn4_A 204 -N-------NLLYAVGGHDGPLVRKSVEVYDP 227 (302)
T ss_dssp -T-------TEEEEECCBSSSSBCCCEEEEET
T ss_pred -C-------CEEEEECCCCCCcccceEEEEeC
Confidence 2 45777777653 6778884
No 309
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=83.89 E-value=1.3e+02 Score=40.18 Aligned_cols=226 Identities=9% Similarity=0.004 Sum_probs=125.9
Q ss_pred EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEEcCCCcccccccC
Q 000054 2233 FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQLEVGGRSNVRPM 2311 (2548)
Q Consensus 2233 ~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWDl~tgk~i~i~p~ 2311 (2548)
+|+.+ ..+.|+..++++......+. . .....+..|+|++.+..++.+ ..++.|..++++......+...
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~--------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~ 77 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIP--------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF 77 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECC--------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEE--------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC
Confidence 44443 56789999998654333221 1 112568999999976666554 5568898888875432111100
Q ss_pred ccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCCCeEEEEEccCCCCCCCCCCEEEE
Q 000054 2312 ESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGGARSISVFDNDLGSGSVSPLIVT 2390 (2548)
Q Consensus 2312 ~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~~VtSLafsP~dlg~gs~g~lLVS 2390 (2548)
-...... .++.+.+..|+.+. +..+.|.+.++.. .....+ ...-.....|++.|.. +.+.++
T Consensus 78 -----g~~~P~G-lAvD~~~~~LY~tD--~~~~~I~v~~~dG---~~~~~l~~~~l~~P~~iavdp~~------G~lY~t 140 (628)
T 4a0p_A 78 -----GLDYPEG-MAVDWLGKNLYWAD--TGTNRIEVSKLDG---QHRQVLVWKDLDSPRALALDPAE------GFMYWT 140 (628)
T ss_dssp -----SCSCCCE-EEEETTTTEEEEEE--TTTTEEEEEETTS---TTCEEEECSSCCCEEEEEEETTT------TEEEEE
T ss_pred -----CCCCcce-EEEEeCCCEEEEEE--CCCCEEEEEecCC---CcEEEEEeCCCCCcccEEEccCC------CeEEEe
Confidence 0011222 34666655555554 3678899999864 222222 2334567899998863 445555
Q ss_pred E-eCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEE
Q 000054 2391 G-GKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLF 2469 (2548)
Q Consensus 2391 G-S~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~L 2469 (2548)
- +..+.|...++. |.....+ . . .-.....|++++++..|
T Consensus 141 D~g~~~~I~r~~~d----G~~~~~l--------------------------------~---~-~~~~P~GlalD~~~~~L 180 (628)
T 4a0p_A 141 EWGGKPKIDRAAMD----GSERTTL--------------------------------V---P-NVGRANGLTIDYAKRRL 180 (628)
T ss_dssp ECSSSCEEEEEETT----SCSCEEE--------------------------------E---C-SCSSEEEEEEETTTTEE
T ss_pred CCCCCCEEEEEeCC----CCceEEE--------------------------------E---C-CCCCcceEEEccccCEE
Confidence 3 224566666632 1111111 0 1 23456789999977666
Q ss_pred EEEe-CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2470 LTGS-KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2470 aSGS-~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
+.+. ..+.|...|+..... ..+. .+. .....+++..+. ++|-...+.|...|..++
T Consensus 181 Y~aD~~~~~I~~~d~dG~~~-~v~~-------------~~l-----~~P~glav~~~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 181 YWTDLDTNLIESSNMLGLNR-EVIA-------------DDL-----PHPFGLTQYQDYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEEETTTTEEEEEETTSCSC-EEEE-------------ECC-----SCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EEEECCCCEEEEEcCCCCce-EEee-------------ccC-----CCceEEEEECCEEEEecCCCCEEEEEECCCC
Confidence 6664 467889999865433 2221 000 012345666655 456556777877776554
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=83.85 E-value=13 Score=44.09 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=57.9
Q ss_pred CCCEEEEEECC----CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC------CcEEEEE
Q 000054 2230 LRPFFLVGSSN----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD------GTVCTWQ 2299 (2548)
Q Consensus 2230 dG~~LASGS~D----GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D------GtVrVWD 2299 (2548)
++.+++.|+.+ ..+.+||..+++-... ...+. +... -..+.+ ++..++.|+.+ ..+.+||
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~---~r~~----~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d 124 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSK-LGPPT---PRDS----LAACAA--EGKIYTSGGSEVGNSALYLFECYD 124 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEE-ECCSS---CCBS----CEEEEE--TTEEEEECCBBTTBSCCCCEEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEEC-CCCCc---cccc----eeEEEE--CCEEEEECCCCCCCcEeeeEEEEe
Confidence 56677777755 6788999888754332 22221 1111 122222 57777777765 4688889
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC------CCeEEEEECCCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN------GINVVVWDTLAP 2354 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~------DGtVrIWDl~t~ 2354 (2548)
..+..-....+. ......|.. ...++++++.||.... -..+.+||+.+.
T Consensus 125 ~~~~~W~~~~~~--p~~r~~~~~----~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 125 TRTESWHTKPSM--LTQRCSHGM----VEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TTTTEEEEECCC--SSCCBSCEE----EEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CCCCceEeCCCC--cCCcceeEE----EEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 877642222111 011222221 1126677777764211 345888998763
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=83.71 E-value=14 Score=43.50 Aligned_cols=148 Identities=14% Similarity=0.204 Sum_probs=73.1
Q ss_pred CCCEEEEEECC-----CeEEEEEcCCCc---eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC-----cEE
Q 000054 2230 LRPFFLVGSSN-----THIYLWEFGKDK---ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-----TVC 2296 (2548)
Q Consensus 2230 dG~~LASGS~D-----GsVrLWDl~tg~---~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG-----tVr 2296 (2548)
++.+++.|+.+ ..+.+||..+++ -.. +...+. +. ..-..+.. ++..++.|+.++ .+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~-~~~~p~---~r----~~~~~~~~--~~~lyv~GG~~~~~~~~~~~ 131 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-VAPMNV---RR----GLAGATTL--GDMIYVSGGFDGSRRHTSME 131 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE-ECCCSS---CC----BSCEEEEE--TTEEEEECCBCSSCBCCEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE-CCCCCC---Cc----cceeEEEE--CCEEEEEcccCCCcccceEE
Confidence 46677777755 468899988765 222 222111 11 11122222 567777776543 577
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC--CCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN--GINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~--DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
+||..+.+-....+.. .....|.. ...++++++.||.... -..+.+||+.+.....+..+.........+.+
T Consensus 132 ~~d~~~~~W~~~~~~p--~~r~~~~~----~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 205 (301)
T 2vpj_A 132 RYDPNIDQWSMLGDMQ--TAREGAGL----VVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL 205 (301)
T ss_dssp EEETTTTEEEEEEECS--SCCBSCEE----EEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred EEcCCCCeEEECCCCC--CCcccceE----EEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE
Confidence 8888766422221110 11122221 1126777777763211 24688899875322222222211111222222
Q ss_pred ccCCCCCCCCCCEEEEEeCC-----CcEEEEeC
Q 000054 2375 FDNDLGSGSVSPLIVTGGKG-----GDVGIHDF 2402 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~D-----GtVrLWDL 2402 (2548)
+ +.+++.||.+ ..|.+||+
T Consensus 206 --~-------~~i~v~GG~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 206 --N-------DHIYVVGGFDGTAHLSSVEAYNI 229 (301)
T ss_dssp --T-------TEEEEECCBCSSSBCCCEEEEET
T ss_pred --C-------CEEEEEeCCCCCcccceEEEEeC
Confidence 2 4477777764 46788884
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=83.50 E-value=34 Score=40.38 Aligned_cols=106 Identities=8% Similarity=-0.073 Sum_probs=53.8
Q ss_pred CEEEEEEC--CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----CcEEEEEcCCCcc
Q 000054 2232 PFFLVGSS--NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----GTVCTWQLEVGGR 2305 (2548)
Q Consensus 2232 ~~LASGS~--DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D----GtVrVWDl~tgk~ 2305 (2548)
.+++.|+. ...+.+||..+++-. .+...+. +. ..-..+.+ ++..++.|+.+ ..+.+||..+..-
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~-~~~~~p~---~r----~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W 82 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWT-DIRCPFE---KR----RDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSW 82 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEE-ECCCCSC---CC----BSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEe-cCCCCCc---cc----ceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeE
Confidence 34556654 357889998876533 2222111 11 11122222 56677777755 5788888877642
Q ss_pred cccccCccceeccCCcccEEEEcCCCCEEEEEecc---CCCCeEEEEECCC
Q 000054 2306 SNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS---SNGINVVVWDTLA 2353 (2548)
Q Consensus 2306 i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~S---S~DGtVrIWDl~t 2353 (2548)
....+. ......|.. . ..++++++.||.. ..-..+.+||..+
T Consensus 83 ~~~~~~--p~~r~~~~~--~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 127 (306)
T 3ii7_A 83 YSKLGP--PTPRDSLAA--C--AAEGKIYTSGGSEVGNSALYLFECYDTRT 127 (306)
T ss_dssp EEEECC--SSCCBSCEE--E--EETTEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred EECCCC--CccccceeE--E--EECCEEEEECCCCCCCcEeeeEEEEeCCC
Confidence 222111 011122221 1 1266777777631 0124588899875
No 313
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=82.73 E-value=1.1e+02 Score=40.68 Aligned_cols=155 Identities=10% Similarity=-0.016 Sum_probs=89.6
Q ss_pred EEEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWD 2299 (2548)
..+++|++.+..+. +-..++.|+.++.+.......+.. .......+++.+.+..|+.+ ...+.|.+.+
T Consensus 39 ~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~----------g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~ 108 (628)
T 4a0p_A 39 ASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF----------GLDYPEGMAVDWLGKNLYWADTGTNRIEVSK 108 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------SCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC----------CCCCcceEEEEeCCCEEEEEECCCCEEEEEe
Confidence 47889998655544 556678899988875443333211 11346788898765555544 4567899998
Q ss_pred cCCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
++........ ...-.. .-.++.|....+..+... ..+.|...++.. .....+...-.....|++.+..
T Consensus 109 ~dG~~~~~l~-------~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG---~~~~~l~~~~~~P~GlalD~~~ 177 (628)
T 4a0p_A 109 LDGQHRQVLV-------WKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDG---SERTTLVPNVGRANGLTIDYAK 177 (628)
T ss_dssp TTSTTCEEEE-------CSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS---CSCEEEECSCSSEEEEEEETTT
T ss_pred cCCCcEEEEE-------eCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCC---CceEEEECCCCCcceEEEcccc
Confidence 8744221110 011111 122467644444443211 256777777753 3333333344577899999873
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCC
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR 2403 (2548)
+.+.++-...+.|...|+.
T Consensus 178 ------~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 178 ------RRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp ------TEEEEEETTTTEEEEEETT
T ss_pred ------CEEEEEECCCCEEEEEcCC
Confidence 4556666677888888853
No 314
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=81.10 E-value=72 Score=42.54 Aligned_cols=156 Identities=13% Similarity=0.006 Sum_probs=86.3
Q ss_pred EEEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWD 2299 (2548)
..+++|++.+..|. +-...+.|..++.+.......+-. . .......+++++.+..|+.+ ..++.|.+.+
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~-~--------~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~ 112 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV-S--------GLLSPDGLACDWLGEKLYWTDSETNRIEVSN 112 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC-S--------SCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe-C--------CCCCcCeEEEEecCCEEEEEeCCCCEEEEEE
Confidence 47889998666555 444567888888775432122111 0 12468899999966555555 5568999999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEEEEEccCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARSISVFDND 2378 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtSLafsP~d 2378 (2548)
.+......... . --.+...| ++.|.+..+..+... ..+.|...++.. .....+. ..-...+.|++.+.+
T Consensus 113 ~dG~~~~~l~~----~-~l~~P~~I-avdp~~g~ly~tD~g-~~~~I~r~~~dG---~~~~~l~~~~~~~P~Glald~~~ 182 (619)
T 3s94_A 113 LDGSLRKVLFW----Q-ELDQPRAI-ALDPSSGFMYWTDWG-EVPKIERAGMDG---SSRFIIINSEIYWPNGLTLDYEE 182 (619)
T ss_dssp TTSCSCEEEEC----S-SCSCCCCE-EEETTTTEEEEEECS-SSCEEEEEETTS---CSCEEEECSSCSSEEEEEEETTT
T ss_pred CCCCCEEEEEe----C-CCCCCceE-EEecCCCeEEEeccC-CCCEEEEEECCC---CceEEEEeCCCCCCcEEEEEccC
Confidence 87543211110 0 11122233 466654444443311 245666666652 3222222 234567889998874
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeC
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDL 2402 (2548)
+.+.++-...+.|...|+
T Consensus 183 ------~~LY~aD~~~~~I~~~~~ 200 (619)
T 3s94_A 183 ------QKLYWADAKLNFIHKSNL 200 (619)
T ss_dssp ------TEEEEEETTTCCEEEESS
T ss_pred ------CEEEEEeCCCCeEEEecC
Confidence 556666666778888885
No 315
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=77.86 E-value=4.3 Score=45.90 Aligned_cols=87 Identities=13% Similarity=0.224 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHhccCCcchhHHHHHHhcchHHHHHHHhccccCCchhHHHHhhccCChHHHHHHHHhhHHHHhhcc
Q 000054 1244 TQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEEKNKAAALKNAYVLLGRH 1323 (2548)
Q Consensus 1244 ~~lr~~~e~iA~~~~~~~~dp~~~al~Y~al~Kk~vl~~L~k~~~~~~~~~~~~Fl~ndF~~~rwr~aA~KNAy~Ll~k~ 1323 (2548)
..|+..==.||..-|++.+|.....++|...|.+.-|..|-|++... .
T Consensus 43 ~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~--------------------------------g 90 (177)
T 3mkq_B 43 EALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTR--------------------------------E 90 (177)
T ss_dssp HHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHT--------------------------------T
T ss_pred HHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHC--------------------------------c
Confidence 34555445789999999999999999999999987777666654322 2
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHcCChhHHhhhhhhhc
Q 000054 1324 QLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVE 1363 (2548)
Q Consensus 1324 ry~~AaaFFLLag~~~dav~V~~~~l~D~qLA~~i~Rl~e 1363 (2548)
+|..|-.-+++-|++++|+++. .+.+-+.+|+++||-|-
T Consensus 91 ~~n~af~~~l~lGdv~~~i~lL-~~~~r~~eA~~~A~t~g 129 (177)
T 3mkq_B 91 DFGSMLLNTFYNNSTKERSSIF-AEGGSLPLAYAVAKANG 129 (177)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHH-HHTTCHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHcCCHHHHHHHH-HHCCChHHHHHHHHHcC
Confidence 2344445567788999999995 77899999999999984
No 316
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=77.83 E-value=53 Score=38.94 Aligned_cols=148 Identities=14% Similarity=0.094 Sum_probs=70.8
Q ss_pred CCCEEEEEECC----CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC----C-----CcEE
Q 000054 2230 LRPFFLVGSSN----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL----D-----GTVC 2296 (2548)
Q Consensus 2230 dG~~LASGS~D----GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~----D-----GtVr 2296 (2548)
++.+++.|+.+ ..+.+||..+++-.. +...+. +..+| ..+.. ++..++.|+. + ..+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~---~r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~ 93 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQV---PRSGL----AGCVV--GGLLYAVGGRNNSPDGNTDSSALD 93 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSS---CCBSC----EEEEE--TTEEEEECCEEEETTEEEECCCEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCc---ccccc----eEEEE--CCEEEEECCCcCCCCCCeecceEE
Confidence 45667777642 368899988765332 221111 11112 12222 5666777765 3 3678
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccC--CCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS--NGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS--~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
+||..+..-....+.. .....|.. ..+ ++++++.||... .-..+.+||+.+.....+..+......-..+.+
T Consensus 94 ~~d~~~~~W~~~~~~p--~~r~~~~~--~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 94 CYNPMTNQWSPCAPMS--VPRNRIGV--GVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp EEETTTTEEEECCCCS--SCCBTCEE--EEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred EECCCCCeEeECCCCC--cCccccEE--EEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 8888766422221111 11122221 112 677777776321 124588899875322222222211112222222
Q ss_pred ccCCCCCCCCCCEEEEEeCC-----CcEEEEeC
Q 000054 2375 FDNDLGSGSVSPLIVTGGKG-----GDVGIHDF 2402 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~D-----GtVrLWDL 2402 (2548)
+ +.+++.||.+ ..+.+||+
T Consensus 168 --~-------~~iyv~GG~~~~~~~~~~~~yd~ 191 (308)
T 1zgk_A 168 --N-------RLLYAVGGFDGTNRLNSAECYYP 191 (308)
T ss_dssp --T-------TEEEEECCBCSSCBCCCEEEEET
T ss_pred --C-------CEEEEEeCCCCCCcCceEEEEeC
Confidence 2 4477777755 35777774
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=77.78 E-value=1.5e+02 Score=36.94 Aligned_cols=161 Identities=9% Similarity=0.025 Sum_probs=82.2
Q ss_pred EEEEcCCCCEEEEE------------ECCCeEEEEEcCCC-ceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCC-EEE
Q 000054 2224 AFSSHPLRPFFLVG------------SSNTHIYLWEFGKD-KATATYGVLPAANVPPPYALASISALQFDH--YGH-RFA 2287 (2548)
Q Consensus 2224 ~VsfSPdG~~LASG------------S~DGsVrLWDl~tg-~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~-~La 2287 (2548)
.+...|+|..+++. ..+|.|.++|..+. .....+.....+ .....-....+.+.+ ++. +|+
T Consensus 54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~---~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNT---LDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSS---CCGGGCCEEEEEEEECTTCCEEEE
T ss_pred eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCC---CCcCceeeeeeEEEECCCCcEEEE
Confidence 34456777555444 27999999998742 112232211100 001123566777755 353 344
Q ss_pred EE-eC--CCcEEEEEcCCCcccccccCccceeccCC----cccEEEEcCCCCEEEEEec-c-------------CCCCeE
Q 000054 2288 SA-AL--DGTVCTWQLEVGGRSNVRPMESCLCFSSH----AMDVSYITSSGSVIAAAGH-S-------------SNGINV 2346 (2548)
Q Consensus 2288 SG-S~--DGtVrVWDl~tgk~i~i~p~~s~~t~~gH----~~~V~afSpdGslLATgG~-S-------------S~DGtV 2346 (2548)
++ .. +.+|.+|+++.+..... ....+.+. .+++. +.++|.+.++... - ...|.|
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~----~~~~~~g~~~~~pND~~-v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLL----HLKTIRHKLLPSVNDIV-AVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEE----EEEEECCTTCSSEEEEE-EEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred EEECCCCCCeEEEEEEECCCCEEE----EEeccccCCCCCCceEE-EeCCCCEEecCCcEeCCcccccchhhccCCccEE
Confidence 44 22 56888988875432111 11112221 22332 5567877776420 0 012455
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCC
Q 000054 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR 2403 (2548)
.-+|.. + +..+...-...+.++|+|+. ..+.++-+..+.|..||+.
T Consensus 206 yr~d~~----~-~~~~~~~l~~pNGia~spDg------~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 206 TYYSPN----D-VRVVAEGFDFANGINISPDG------KYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEECTT----C-CEEEEEEESSEEEEEECTTS------SEEEEEEGGGTEEEEEEEC
T ss_pred EEEECC----e-EEEeecCCcccCcceECCCC------CEEEEEeCCCCeEEEEEEC
Confidence 555542 2 22333334567899999993 3345555678899999953
No 318
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=74.59 E-value=44 Score=41.61 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=24.2
Q ss_pred CEEEEEEeCCCCEEEEEe-CCCcEEEEECCC
Q 000054 2456 SVTRISTVPNTSLFLTGS-KDGDVKLWDAKA 2485 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS-~DGtIrIWDl~T 2485 (2548)
.-+.++|+||++.|+.+. ..+.|..|++..
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 457899999998877764 578999999863
No 319
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=74.24 E-value=1.4e+02 Score=35.51 Aligned_cols=103 Identities=9% Similarity=0.137 Sum_probs=49.6
Q ss_pred EEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC----CC-------cEEEEEcCC
Q 000054 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL----DG-------TVCTWQLEV 2302 (2548)
Q Consensus 2234 LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~----DG-------tVrVWDl~t 2302 (2548)
++.|+. .+..||..+++-.. ... +.. ...........++..++.|+. ++ .+.++|..+
T Consensus 19 ~~~GG~--~~~~yd~~~~~W~~-~~~-~~~-------~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~ 87 (318)
T 2woz_A 19 LLVNDT--AAVAYDPMENECYL-TAL-AEQ-------IPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVS 87 (318)
T ss_dssp EEECSS--EEEEEETTTTEEEE-EEE-CTT-------SCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTT
T ss_pred hhcccc--ceEEECCCCCceec-ccC-Ccc-------CCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCC
Confidence 444443 38899988876543 111 110 011122223456777888873 22 166778776
Q ss_pred CcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC----CeEEEEECCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG----INVVVWDTLA 2353 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D----GtVrIWDl~t 2353 (2548)
.+-....+.. .....|.. ..+ ++++++.||....+ ..+.+||+.+
T Consensus 88 ~~W~~~~~~p--~~r~~~~~--~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~ 136 (318)
T 2woz_A 88 SEWVGLPPLP--SARCLFGL--GEV--DDKIYVVAGKDLQTEASLDSVLCYDPVA 136 (318)
T ss_dssp TEEEECSCBS--SCBCSCEE--EEE--TTEEEEEEEEBTTTCCEEEEEEEEETTT
T ss_pred CcEEECCCCC--ccccccce--EEE--CCEEEEEcCccCCCCcccceEEEEeCCC
Confidence 5422221110 11122222 112 67778887732001 3577888865
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=72.22 E-value=42 Score=39.89 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=72.2
Q ss_pred CCCEEEEEEC----C-----CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-----CcE
Q 000054 2230 LRPFFLVGSS----N-----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-----GTV 2295 (2548)
Q Consensus 2230 dG~~LASGS~----D-----GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-----GtV 2295 (2548)
++.+++.|+. + ..+.+||..+.+-.. +...+. +. ..-..+.+ +++.++.|+.+ ..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~---~r----~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 139 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP-CAPMSV---PR----NRIGVGVI--DGHIYAVGGSHGCIHHNSV 139 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE-CCCCSS---CC----BTCEEEEE--TTEEEEECCEETTEECCCE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeE-CCCCCc---Cc----cccEEEEE--CCEEEEEcCCCCCcccccE
Confidence 5666677665 2 458888887765322 211111 11 11222222 56777777654 367
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC--CCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN--GINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~--DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
.+||..+.+-....+. ......|.. ..+ ++.+++.||.... -..+.+||+.+.....+..+.........+.
T Consensus 140 ~~yd~~~~~W~~~~~~--p~~r~~~~~--~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 213 (308)
T 1zgk_A 140 ERYEPERDEWHLVAPM--LTRRIGVGV--AVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV 213 (308)
T ss_dssp EEEETTTTEEEECCCC--SSCCBSCEE--EEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred EEECCCCCeEeECCCC--CccccceEE--EEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE
Confidence 8888876642222111 111222221 112 6677777763211 2458889987532222222221111222222
Q ss_pred EccCCCCCCCCCCEEEEEeCC-----CcEEEEeC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKG-----GDVGIHDF 2402 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~D-----GtVrLWDL 2402 (2548)
+ + +.+++.||.+ ..+.+||+
T Consensus 214 ~--~-------~~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 214 L--H-------NCIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp E--T-------TEEEEECCBCSSSBCCCEEEEET
T ss_pred E--C-------CEEEEEeCCCCCCccceEEEEeC
Confidence 2 2 4577777765 45788884
No 321
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=70.95 E-value=33 Score=40.81 Aligned_cols=149 Identities=11% Similarity=0.113 Sum_probs=71.5
Q ss_pred CCCCEEEEEEC----C-------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-----
Q 000054 2229 PLRPFFLVGSS----N-------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----- 2292 (2548)
Q Consensus 2229 PdG~~LASGS~----D-------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D----- 2292 (2548)
.++.+++.|+. + ..+.+||..+++-. .+...+. +...| ..+.+ ++..++.|+.+
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~---~r~~~----~~~~~--~~~lyv~GG~~~~~~~ 113 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPPLPS---PRCLF----GLGEA--LNSIYVVGGREIKDGE 113 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCCBSS---CEESC----EEEEE--TTEEEEECCEESSTTC
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCCCCc---chhce----eEEEE--CCEEEEEeCCcCCCCC
Confidence 46777777773 1 12677888776532 2221111 11111 12222 56666666632
Q ss_pred ---CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC---CCeEEEEECCCCCCCcceeeeccC
Q 000054 2293 ---GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN---GINVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2293 ---GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~---DGtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
..+.+||..+.+-....+. .....+|.. ...++++++.||.... -..+.+||+.+.....+..+....
T Consensus 114 ~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~----~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 187 (315)
T 4asc_A 114 RCLDSVMCYDRLSFKWGESDPL--PYVVYGHTV----LSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR 187 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCC--SSCCBSCEE----EEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred cccceEEEECCCCCcEeECCCC--CCcccceeE----EEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch
Confidence 3688888876642221111 011222221 2236677777773101 246888998753222222222111
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCC-----cEEEEeC
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGG-----DVGIHDF 2402 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DG-----tVrLWDL 2402 (2548)
....++.+ + +.+++.||.++ .+.+||+
T Consensus 188 ~~~~~~~~--~-------~~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 188 SLFGATVH--D-------GRIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp BSCEEEEE--T-------TEEEEEEEECSSSEEEEEEEEET
T ss_pred hceEEEEE--C-------CEEEEEeccCCCCccceEEEEEC
Confidence 11222222 2 45788888655 4777773
No 322
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=67.78 E-value=1.5e+02 Score=43.46 Aligned_cols=208 Identities=13% Similarity=0.166 Sum_probs=117.5
Q ss_pred cCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccc
Q 000054 2228 HPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2228 SPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
||..+.+|.-+ ..++.|+|+++...++.+.. ...|.--+|-.+.. |+-.+ +..|.-|++.... .+
T Consensus 74 nP~~~iiALra-g~~lQiFnl~~k~klks~~~-----------~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s-~P 138 (1630)
T 1xi4_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-----------TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGES-QP 138 (1630)
T ss_pred CCCcceEEEec-CCeEEEeehHHhhhhccccc-----------CCCceEEEecCCCe-eEEEc-CCeEEEeccCCCC-cc
Confidence 56666666543 57899999998776666532 25577777764443 32222 4689999996421 11
Q ss_pred cccCccceeccCC----cccEEE--EcCCCCEEEEEeccC----CCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2308 VRPMESCLCFSSH----AMDVSY--ITSSGSVIAAAGHSS----NGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2308 i~p~~s~~t~~gH----~~~V~a--fSpdGslLATgG~SS----~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
.+.+..| ...|.. .+++.++++..|-+. -.|.+.+|.... +.-+.+.||.+....+.....
T Consensus 139 ------~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er---~~sQ~iegha~~F~~~~~~~~ 209 (1630)
T 1xi4_A 139 ------VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---KVSQPIEGHAASFAQFKMEGN 209 (1630)
T ss_pred ------HHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc---ccchhhhHhHhhhheeccCCC
Confidence 1223333 234443 678888888766432 346788888864 345566777776655554322
Q ss_pred CCCCCCCCCEEEEEeC---CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2378 DLGSGSVSPLIVTGGK---GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~---DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
. ....+++.+.. .+.+.|-++.....|...... ...-+.|.|+ .-.
T Consensus 210 ~----~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~k---------k~~~~~~~~~------------------~~~ 258 (1630)
T 1xi4_A 210 A----EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK---------KAVDVFFPPE------------------AQN 258 (1630)
T ss_pred C----CCceEEEEEEecCCCceEEEEecCCCccCCCCCcc---------ccccccCCcc------------------ccc
Confidence 1 11223333322 267777775321011110000 0001111111 122
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 000054 2455 GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~ 2490 (2548)
.--.++..++.-..+..-+.-|.|.++|+.||.++.
T Consensus 259 Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 259 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred CcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 233467788877788888899999999999999875
No 323
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=65.39 E-value=76 Score=37.73 Aligned_cols=110 Identities=13% Similarity=0.201 Sum_probs=54.2
Q ss_pred CCCCEEEEEEC----CC-------eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-----
Q 000054 2229 PLRPFFLVGSS----NT-------HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----- 2292 (2548)
Q Consensus 2229 PdG~~LASGS~----DG-------sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D----- 2292 (2548)
.++.+++.|+. ++ .+.+||..+++-. .+...+. +. .....+.+ ++..++.|+.+
T Consensus 55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~---~r----~~~~~~~~--~~~iyv~GG~~~~~~~ 124 (318)
T 2woz_A 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV-GLPPLPS---AR----CLFGLGEV--DDKIYVVAGKDLQTEA 124 (318)
T ss_dssp SSSCEEEEESSCC-------CCCBEEEEEETTTTEEE-ECSCBSS---CB----CSCEEEEE--TTEEEEEEEEBTTTCC
T ss_pred ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEE-ECCCCCc---cc----cccceEEE--CCEEEEEcCccCCCCc
Confidence 46777777773 12 1677887766532 2221111 11 11122222 56777777754
Q ss_pred --CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC---CCeEEEEECCCC
Q 000054 2293 --GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN---GINVVVWDTLAP 2354 (2548)
Q Consensus 2293 --GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~---DGtVrIWDl~t~ 2354 (2548)
..+.+||..+.+-....+. .....+|.. ...++++++.||.... -..+.+||+.+.
T Consensus 125 ~~~~~~~yd~~~~~W~~~~~~--p~~r~~~~~----~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 125 SLDSVLCYDPVAAKWSEVKNL--PIKVYGHNV----ISHNGMIYCLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp EEEEEEEEETTTTEEEEECCC--SSCEESCEE----EEETTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred ccceEEEEeCCCCCEeECCCC--CCcccccEE----EEECCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence 2577788876542222111 111223332 1236777777763211 235889998753
No 324
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=65.23 E-value=93 Score=45.35 Aligned_cols=130 Identities=11% Similarity=0.112 Sum_probs=72.3
Q ss_pred ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceec
Q 000054 2238 SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCF 2317 (2548)
Q Consensus 2238 S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~ 2317 (2548)
+...+|.|-|+.++..+..-. . .--+.-.+|..+.+|.=+ ..++.++|+++..+... +
T Consensus 45 ~~~~~vvIidl~~~~~~~rrp---------i----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks--------~ 102 (1630)
T 1xi4_A 45 GEQAQVVIIDMNDPSNPIRRP---------I----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA--------H 102 (1630)
T ss_pred CCCceEEEEECCCCCCccccc---------c----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcc--------c
Confidence 344478899988765442210 0 011223455555554443 67999999987654322 2
Q ss_pred cCCcccEEEEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC----CCeEEEEEccCCCCCCCCCCEEEEEe
Q 000054 2318 SSHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE----GGARSISVFDNDLGSGSVSPLIVTGG 2392 (2548)
Q Consensus 2318 ~gH~~~V~afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs----~~VtSLafsP~dlg~gs~g~lLVSGS 2392 (2548)
.-. .+|.+|.+ +.+.++.. .+..|..|++.. +..++..+..|. ..|..-..+++ .++++..|
T Consensus 103 ~~~-e~VvfWkWis~~~l~lV----T~~aVyHW~~~~-~s~P~k~fdR~~~L~~~QIinY~~d~~-------~kW~~l~g 169 (1630)
T 1xi4_A 103 TMT-DDVTFWKWISLNTVALV----TDNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAK-------QKWLLLTG 169 (1630)
T ss_pred ccC-CCceEEEecCCCeeEEE----cCCeEEEeccCC-CCccHHHHhcchhcccCeeEEeeeCCC-------CCeEEEEe
Confidence 222 24554332 33455555 368999999964 356666666553 33444444444 45555433
Q ss_pred -------CCCcEEEEeC
Q 000054 2393 -------KGGDVGIHDF 2402 (2548)
Q Consensus 2393 -------~DGtVrLWDL 2402 (2548)
-.|.+.+|..
T Consensus 170 i~~~~~~v~G~mQLyS~ 186 (1630)
T 1xi4_A 170 ISAQQNRVVGAMQLYSV 186 (1630)
T ss_pred eccCCCcccceeeeeec
Confidence 3467777774
No 325
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=61.02 E-value=5.5e+02 Score=36.85 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=47.8
Q ss_pred EEEEEEcCC------CCEEEEEEC-CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEc--cCCCEEEEEeCC
Q 000054 2222 TRAFSSHPL------RPFFLVGSS-NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFD--HYGHRFASAALD 2292 (2548)
Q Consensus 2222 V~~VsfSPd------G~~LASGS~-DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFS--PdG~~LaSGS~D 2292 (2548)
+.|+++.|. ++++++|.. |++|+|+++.+.+.+..... +.. ....++.+. ....+|..|-.|
T Consensus 556 vscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L-~~~--------~~p~si~l~~~~~~~~L~igl~d 626 (1158)
T 3ei3_A 556 VACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML-GGE--------IIPRSILMTTFESSHYLLCALGD 626 (1158)
T ss_dssp EEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC-CSS--------CCEEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC-CCC--------CCCcEEEEEEeCCCcEEEEEeCC
Confidence 577777653 479999996 99999999997666554332 111 233444433 234678899999
Q ss_pred CcEEEEEcC
Q 000054 2293 GTVCTWQLE 2301 (2548)
Q Consensus 2293 GtVrVWDl~ 2301 (2548)
|.+..+.++
T Consensus 627 G~l~~~~~d 635 (1158)
T 3ei3_A 627 GALFYFGLN 635 (1158)
T ss_dssp SEEEEEEEC
T ss_pred CeEEEEEEc
Confidence 998766654
No 326
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=59.06 E-value=1.9e+02 Score=37.04 Aligned_cols=115 Identities=9% Similarity=0.014 Sum_probs=61.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC---CCEEEEEeC-------
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY---GHRFASAAL------- 2291 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd---G~~LaSGS~------- 2291 (2548)
...++|.|+|+++++-...+.|++++..+++.. .+..+.... ......+....|+|+|+ +..|+.+..
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~-~~~~~~~~~-~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVK-TVFQVPEIV-NDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCC-CCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe-EEecCCccc-cccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 478999999997776544457888876555432 222222100 00112367889999995 555554432
Q ss_pred ------CCcEEEEEcCCCc-cc-ccccCc-cceeccCCcccEEEEcCCCCEEEEEe
Q 000054 2292 ------DGTVCTWQLEVGG-RS-NVRPME-SCLCFSSHAMDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2292 ------DGtVrVWDl~tgk-~i-~i~p~~-s~~t~~gH~~~V~afSpdGslLATgG 2338 (2548)
...|.-++...+. .. ...... ....-..|...-..|.+||.+.++.|
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 1245555553321 00 000000 00001235544456999999888876
No 327
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=58.83 E-value=1.7e+02 Score=39.43 Aligned_cols=160 Identities=12% Similarity=0.132 Sum_probs=77.8
Q ss_pred CCCCEEEEEECC----CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC------cEEEE
Q 000054 2229 PLRPFFLVGSSN----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG------TVCTW 2298 (2548)
Q Consensus 2229 PdG~~LASGS~D----GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG------tVrVW 2298 (2548)
-++.+++.||.+ ..+.+||..+++-...-...+....+.+ ...-..+.+..++..++.|+.++ .+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~--R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVA--RMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCC--CBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCcc--ccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence 356677777653 4688899887654332101110000111 11122333322677778877553 57788
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee---eeccCCCeEEEEEc
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS---ITCHEGGARSISVF 2375 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s---l~gHs~~VtSLafs 2375 (2548)
|..+..-....+. .....+|.. +.-.++++++.||.. .++.+.+||+.+.....+.. +........++.+.
T Consensus 474 d~~t~~W~~~~~~--p~~R~~h~~---~~~~~~~iyv~GG~~-~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 474 DMKTREWSMIKSL--SHTRFRHSA---CSLPDGNVLILGGVT-EGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp ETTTTEEEECCCC--SBCCBSCEE---EECTTSCEEEECCBC-SSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred eCCCCcEEECCCC--CCCcccceE---EEEcCCEEEEECCCC-CCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 8876532221111 111222321 222378888888853 23379999987632222221 11111122224434
Q ss_pred cCCCCCCCCCCEEEEEeC--C-----CcEEEEeC
Q 000054 2376 DNDLGSGSVSPLIVTGGK--G-----GDVGIHDF 2402 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~--D-----GtVrLWDL 2402 (2548)
... +.+++.||. + +.+.+||+
T Consensus 548 ~~~------~~iyv~GG~~~~~~~~~~~v~~yd~ 575 (695)
T 2zwa_A 548 PVS------KQGIILGGGFMDQTTVSDKAIIFKY 575 (695)
T ss_dssp TTT------TEEEEECCBCTTSSCBCCEEEEEEE
T ss_pred CCC------CEEEEECCcCCCCCeeeCcEEEEEc
Confidence 331 447777775 2 35777884
No 328
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=58.63 E-value=4.1e+02 Score=34.56 Aligned_cols=118 Identities=11% Similarity=0.103 Sum_probs=66.2
Q ss_pred EEEEEE-------cCCCCEEEEEECCC-------eEEEEEcCC-Ccee-----EEEeccCCCCCCCCCCCCCeEEEEEcc
Q 000054 2222 TRAFSS-------HPLRPFFLVGSSNT-------HIYLWEFGK-DKAT-----ATYGVLPAANVPPPYALASISALQFDH 2281 (2548)
Q Consensus 2222 V~~Vsf-------SPdG~~LASGS~DG-------sVrLWDl~t-g~~l-----~t~~~l~ghs~~~~~H~~~VtsVaFSP 2281 (2548)
...++| +++|.+++++...+ .|.+.+... +... ..+... .....++++|
T Consensus 188 p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-----------~~p~giavdp 256 (496)
T 3kya_A 188 IRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-----------KQCNGATIHP 256 (496)
T ss_dssp EEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-----------SCCCCEEECT
T ss_pred CcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-----------CCceEEEEcC
Confidence 578888 99999666655443 366665443 2221 122111 2345678899
Q ss_pred C-CCEEEEEeCCCcEEEEEcC-------CCcc-cccccC-----ccceeccCCc-ccEEEEcCCCCEEEEEeccCCCCeE
Q 000054 2282 Y-GHRFASAALDGTVCTWQLE-------VGGR-SNVRPM-----ESCLCFSSHA-MDVSYITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2282 d-G~~LaSGS~DGtVrVWDl~-------tgk~-i~i~p~-----~s~~t~~gH~-~~V~afSpdGslLATgG~SS~DGtV 2346 (2548)
+ +.++++-..++.|..+|+. ++.. ....+. .......... ..-.+++|+|+.+..+. +..+.|
T Consensus 257 ~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD--~~~h~I 334 (496)
T 3kya_A 257 INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV--INNHYF 334 (496)
T ss_dssp TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE--TTTTEE
T ss_pred CCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe--CCCCEE
Confidence 4 5556666677889999987 4432 000000 0011111111 12246999999766665 467889
Q ss_pred EEEECC
Q 000054 2347 VVWDTL 2352 (2548)
Q Consensus 2347 rIWDl~ 2352 (2548)
+.+|..
T Consensus 335 ~kid~d 340 (496)
T 3kya_A 335 MRSDYD 340 (496)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 887654
No 329
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=56.61 E-value=3.7e+02 Score=34.25 Aligned_cols=49 Identities=2% Similarity=-0.008 Sum_probs=30.0
Q ss_pred EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec------cCCCeEEEEEccC
Q 000054 2326 YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC------HEGGARSISVFDN 2377 (2548)
Q Consensus 2326 afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g------Hs~~VtSLafsP~ 2377 (2548)
++.|+|+++++-- ..+.|++++........+..+.. ..++...|+++|+
T Consensus 33 a~~pdG~l~V~e~---~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 33 LWGPDNQIWLTER---ATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp EECTTSCEEEEET---TTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred EEcCCCcEEEEEc---CCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence 5789999888752 33478888764321122222221 2567889999986
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=54.62 E-value=76 Score=38.28 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=18.7
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCcEEEEe
Q 000054 2465 NTSLFLTGSKDG------DVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2465 dG~~LaSGS~DG------tIrIWDl~Tgell~tL 2492 (2548)
++++++.||.++ .|.++++++++.+...
T Consensus 316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 316 NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 678888888653 3556688888776544
No 331
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.91 E-value=2e+02 Score=40.32 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=34.8
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2455 GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
..+.+++..++..+++|-+.|+++|||++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 367788888899999999999999999999999998763
No 332
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=46.62 E-value=5e+02 Score=32.06 Aligned_cols=113 Identities=11% Similarity=0.097 Sum_probs=63.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC---CCEEEEE---eCCCcE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY---GHRFASA---ALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd---G~~LaSG---S~DGtV 2295 (2548)
...++|.|+|.++++--..|.|++++..+++.. .+...+. -.....+....|+|+|+ +..|+.. ..++.|
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~~~---v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEVPG---VSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTT---CCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eecccCc---eeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 478999999997777655899999986655532 2222110 01112367899999995 3444433 234556
Q ss_pred EEEEcCCCcc--cccccCccc-ee---ccCCcccEEEEcCCCCEEEEEe
Q 000054 2296 CTWQLEVGGR--SNVRPMESC-LC---FSSHAMDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2296 rVWDl~tgk~--i~i~p~~s~-~t---~~gH~~~V~afSpdGslLATgG 2338 (2548)
.-|....+.. ......+.. .. -..|...-..|.|||.+.++.|
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 6666654210 000000000 01 1345544456899999888866
No 333
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=44.29 E-value=2.4e+02 Score=38.01 Aligned_cols=111 Identities=9% Similarity=0.090 Sum_probs=54.0
Q ss_pred CCCEEEEEeCC----CcEEEEEcCCCcccccc-cCc---cceeccCCcccEEEEcCCCCEEEEEeccCCC---CeEEEEE
Q 000054 2282 YGHRFASAALD----GTVCTWQLEVGGRSNVR-PME---SCLCFSSHAMDVSYITSSGSVIAAAGHSSNG---INVVVWD 2350 (2548)
Q Consensus 2282 dG~~LaSGS~D----GtVrVWDl~tgk~i~i~-p~~---s~~t~~gH~~~V~afSpdGslLATgG~SS~D---GtVrIWD 2350 (2548)
++..++.|+.+ ..+.+||..++.-.... +.. ......+|. +..+..++++++.||..... +.+.+||
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs--~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHT--FTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCE--EEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceE--EEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence 45556666643 35778887766422211 100 011112222 22232277788888743111 3578888
Q ss_pred CCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC--cEEEEeC
Q 000054 2351 TLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG--DVGIHDF 2402 (2548)
Q Consensus 2351 l~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG--tVrLWDL 2402 (2548)
..+.....+..+......- +.....+ +.+++.||.++ .+.+||.
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~-------~~iyv~GG~~~~~~v~~yd~ 520 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPD-------GNVLILGGVTEGPAMLLYNV 520 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTT-------SCEEEECCBCSSCSEEEEET
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcC-------CEEEEECCCCCCCCEEEEEC
Confidence 8763222232222111111 2222123 56888888665 6888884
No 334
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=41.89 E-value=7.5e+02 Score=32.74 Aligned_cols=188 Identities=10% Similarity=0.017 Sum_probs=99.6
Q ss_pred EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEEcCCCcccccccC
Q 000054 2233 FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCTWQLEVGGRSNVRPM 2311 (2548)
Q Consensus 2233 ~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtVrVWDl~tgk~i~i~p~ 2311 (2548)
+|+.+ ..+.|+..++......... ++. .....+.+|+|++.+..|+.++ ..+.|..++.+......+..
T Consensus 319 ~Ll~~-~~~~i~~i~l~~~~~~~~~--~~~------~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~- 388 (619)
T 3s94_A 319 LLLLA-RRTDLRRISLDTPDFTDIV--LQL------EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT- 388 (619)
T ss_dssp EEEEE-ESSCEEEEESSSTTCCCEE--CCC------SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-
T ss_pred EEEEE-cccceEEEecCCCccceeE--Eec------cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE-
Confidence 44443 3456777777754322111 010 1125688999998655555554 57889888887543211110
Q ss_pred ccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEEEEEccCCCCCCCCCCEEEE
Q 000054 2312 ESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARSISVFDNDLGSGSVSPLIVT 2390 (2548)
Q Consensus 2312 ~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtSLafsP~dlg~gs~g~lLVS 2390 (2548)
.-..+... .++.+.+..|+.+. +..+.|.+.++.. +....+. ..-.....|++.|.. +.+.++
T Consensus 389 ----~~~~~p~G-lAvD~~~~~lY~tD--~~~~~I~v~~~~G---~~~~~l~~~~l~~P~~iavdp~~------G~ly~t 452 (619)
T 3s94_A 389 ----AQIAHPDG-IAVDWVARNLYWTD--TGTDRIEVTRLNG---TMRKILISEDLEEPRAIVLDPMV------GYMYWT 452 (619)
T ss_dssp ----SSCSCCCE-EEEETTTTEEEEEE--TTTTEEEEEETTS---CSCEEEECTTCCSEEEEEEETTT------TEEEEE
T ss_pred ----CCCCCcCc-eEEecccCcEEEEe--CCCCcEEEEeCCC---CeEEEEEECCCCCeeeEEEEcCC------CcEEEe
Confidence 00012222 34666555555544 3678899998864 2333332 234567889988873 444444
Q ss_pred Ee-CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEE
Q 000054 2391 GG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLF 2469 (2548)
Q Consensus 2391 GS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~L 2469 (2548)
-. ..+.|...++. |.....+ . ...-.....|++++++..|
T Consensus 453 D~g~~~~I~r~~~d----G~~~~~l--------------------------------~---~~~l~~P~GlalD~~~~~L 493 (619)
T 3s94_A 453 DWGEIPKIERAALD----GSDRVVL--------------------------------V---NTSLGWPNGLALDYDEGKI 493 (619)
T ss_dssp ECSSSCEEEEEETT----SCSCEEE--------------------------------E---CSSCSCEEEEEEETTTTEE
T ss_pred cCCCCCEEEEEccC----CCccEEE--------------------------------E---eCCCCCCeeeEEcccCCEE
Confidence 32 23455544421 1111111 0 1123456678888866666
Q ss_pred EEEe-CCCcEEEEECCC
Q 000054 2470 LTGS-KDGDVKLWDAKA 2485 (2548)
Q Consensus 2470 aSGS-~DGtIrIWDl~T 2485 (2548)
+.+. ..+.|...++..
T Consensus 494 Y~aD~~~~~I~~~~~dG 510 (619)
T 3s94_A 494 YWGDAKTDKIEVMNTDG 510 (619)
T ss_dssp EEEETTTTEEEEEESSS
T ss_pred EEEECCCCEEEEEecCC
Confidence 5554 346777777753
No 335
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=40.94 E-value=6.3e+02 Score=31.55 Aligned_cols=150 Identities=11% Similarity=0.159 Sum_probs=91.8
Q ss_pred CCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-------CCcEEEEEcCCCcccccccC
Q 000054 2240 NTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-------DGTVCTWQLEVGGRSNVRPM 2311 (2548)
Q Consensus 2240 DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-------DGtVrVWDl~tgk~i~i~p~ 2311 (2548)
+..|+-|++.. ..+.+.+..++.- ....|..-+.+++.+.++..+- .|.+.+|.++.+.
T Consensus 125 ~taVyHWs~~~~s~P~kvFdR~~~L------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------- 191 (365)
T 2xzh_A 125 DNAVYHWSMEGESQPVKMFDRHSSL------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------- 191 (365)
T ss_dssp SSEEEEEESSTTCCCEEEEECCGGG------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-------
T ss_pred CCcEEEEcccCCCCCceeeecchhc------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-------
Confidence 45789999874 3455555432211 1256777788888887765432 3678889887553
Q ss_pred ccceeccCCcccEEEEcCCCC-----EEEEEeccCCCCeEEEEECCCC-CCCcce------eee---ccCCCeEEEEEcc
Q 000054 2312 ESCLCFSSHAMDVSYITSSGS-----VIAAAGHSSNGINVVVWDTLAP-PTSSRA------SIT---CHEGGARSISVFD 2376 (2548)
Q Consensus 2312 ~s~~t~~gH~~~V~afSpdGs-----lLATgG~SS~DGtVrIWDl~t~-~~k~v~------sl~---gHs~~VtSLafsP 2376 (2548)
.+.+.||......+..+|+ +++.+......+.++|-++..+ .+.+.. .+- .-.+-.-++..++
T Consensus 192 --sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~ 269 (365)
T 2xzh_A 192 --SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE 269 (365)
T ss_dssp --EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET
T ss_pred --cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc
Confidence 2447889877765544433 4554431123468999998653 122111 011 1234455666666
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
. ...+..-.+-|.|.+|| +.+|.++..-
T Consensus 270 k-------ygviyviTK~G~ihlyD---leTgt~i~~n 297 (365)
T 2xzh_A 270 K-------HDVVFLITKYGYIHLYD---LETGTCIYMN 297 (365)
T ss_dssp T-------TTEEEEEETTSEEEEEE---TTTCCEEEEE
T ss_pred c-------CCEEEEEeCCcEEEEEE---cccCcEEEEe
Confidence 6 34777888999999999 7788887654
No 336
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=40.68 E-value=5.8e+02 Score=31.03 Aligned_cols=64 Identities=11% Similarity=0.182 Sum_probs=35.0
Q ss_pred EEEEEcCC---C-CEEEEEECC-----CeEEEEEcCCCce---eEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000054 2223 RAFSSHPL---R-PFFLVGSSN-----THIYLWEFGKDKA---TATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2223 ~~VsfSPd---G-~~LASGS~D-----GsVrLWDl~tg~~---l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
..++++|+ + .++++-..+ +.|..++...+.. ...+...+.. ....|. ...++|.|+|..+++.+
T Consensus 78 ~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~--~~~~h~--~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 78 LGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPAR--PHGLHS--GGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCC--TTCCCC--CCCEEECTTSCEEEECC
T ss_pred eeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCC--CCCCcC--CceEEECCCCCEEEEEC
Confidence 77889998 4 444443332 6677888765421 1122222210 011232 35899999997666643
No 337
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B
Probab=37.33 E-value=46 Score=42.73 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=36.1
Q ss_pred hcchhHHHHHHHHhcCChhHHHHHHHHHcCChhHHhhhhhh
Q 000054 1321 GRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRL 1361 (2548)
Q Consensus 1321 ~k~ry~~AaaFFLLag~~~dav~V~~~~l~D~qLA~~i~Rl 1361 (2548)
++..++.++-..|.++++.+|++++++. +|+.||.+|+=+
T Consensus 176 ~~~~~~e~i~~~L~~~~v~eA~~~Ai~~-~d~rLA~Llsq~ 215 (442)
T 3bg1_B 176 NSSNEIEQIFLYLLLNDVVRASKLAIES-KNGHLSVLISYL 215 (442)
T ss_dssp TCSCHHHHHHHHHTTTCHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHCCCHHHHHHHHHHC-CCcHHHHHHHHh
Confidence 5788888888889999999999998887 999999999977
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=35.75 E-value=2.8e+02 Score=34.37 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=71.0
Q ss_pred EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee----eccCCCeEEEEEccC---CCCCCCCCCEEEEEe--CCCc
Q 000054 2326 YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI----TCHEGGARSISVFDN---DLGSGSVSPLIVTGG--KGGD 2396 (2548)
Q Consensus 2326 afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl----~gHs~~VtSLafsP~---dlg~gs~g~lLVSGS--~DGt 2396 (2548)
++.|+|.++++-- ..|.|++++........+..+ ....+....|+++|+ + +.+.++-+ .++.
T Consensus 38 a~~pdG~llVter---~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~------g~lYv~yt~~~~~~ 108 (347)
T 3das_A 38 APLPGGDLLVSSR---DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASD------HMVYAYFTSASDNR 108 (347)
T ss_dssp EECTTSCEEEEET---TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHH------CEEEEEEECSSSEE
T ss_pred EEcCCCcEEEEEe---cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccC------CEEEEEEecCCCCE
Confidence 5789999888851 378999988643211122211 223567899999985 2 33434322 3445
Q ss_pred EEEEeCCc-------cccCceee-eecCCCCCCCccccccccCCCCCC-ccCCC------------CCceEEEccc----
Q 000054 2397 VGIHDFRY-------IATGKTKK-HKHSDRGGSSINTCAHADAQTGSG-SKPGD------------QNGMLWYIPK---- 2451 (2548)
Q Consensus 2397 VrLWDLR~-------l~TGk~l~-tl~~~~~~s~~~~~~vafSpdGk~-v~s~D------------~sv~Iwdi~~---- 2451 (2548)
|.-|.+.. +...+.+. .+. .........++|.+||.+ +..++ ..++|+++..
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p---~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIP---KGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEEC---CCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCC---CCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 55554321 00111111 111 122233456889999987 32221 2457776532
Q ss_pred --------------CCCCCEEEEEEeCCCCEEEEE
Q 000054 2452 --------------AHLGSVTRISTVPNTSLFLTG 2472 (2548)
Q Consensus 2452 --------------gH~~~VtsLafSPdG~~LaSG 2472 (2548)
+|.. ...++|+|+|.++++=
T Consensus 186 p~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d 219 (347)
T 3das_A 186 APGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASE 219 (347)
T ss_dssp CTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEE
T ss_pred cCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEe
Confidence 2221 3468899987766653
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=34.71 E-value=3.2e+02 Score=32.69 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC
Q 000054 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG 2395 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG 2395 (2548)
.+.+||+.+.....+..+......-.++.+ + +.+++.||.++
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~-------~~i~v~GG~~~ 327 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPW--N-------NSLLIIGGETA 327 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEE--T-------TEEEEEEEECG
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEe--C-------CEEEEEeeeCC
Confidence 577899876444444333322222223332 2 45888888653
No 340
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=34.25 E-value=9.9e+02 Score=31.89 Aligned_cols=281 Identities=10% Similarity=-0.010 Sum_probs=135.8
Q ss_pred EEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
.+.++....+|.+.+. +.+ -+.+++..+++. ..+...... +..-....|.++....+|.. -.|...| +.+...
T Consensus 233 ~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~-~~~~~~~~~--~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~ 305 (758)
T 3ott_A 233 SIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPL-QHIIHDSRN--IQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRY 305 (758)
T ss_dssp EEEEEEECTTCCEEEE-ETT-EEEEECCTTSCC-EEECCCTTC--TTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECC
T ss_pred eEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcE-EEEEcCCCC--cCcCCcCeEEEEEEcCCCCE-EEEeCCc-cccccc
Confidence 3677777777776554 444 477888766543 222211100 11112357999998888874 4455556 444432
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec-------cCCCeEE
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC-------HEGGARS 2371 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g-------Hs~~VtS 2371 (2548)
. .. ....+... .........|.+ ...+|.+.+.. .+| +..++...........+.. ....|.+
T Consensus 306 ~-~~-~~~~~~~~-~~~~~~~~~v~~i~~D~~g~lWiGt----~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 377 (758)
T 3ott_A 306 N-SA-LQFIPISQ-ITGTGDGNQFYSLFRDSKGFYWFGG----ANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRH 377 (758)
T ss_dssp C-C--CEEEEHHH-HSCSCCCCBEEEEEECTTCCEEEEE----TTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEE
T ss_pred C-Cc-eeEEeccc-CCCCCCCceEEEEEEcCCCCEEEee----CCc-ceeecccccccceeEEeccCCcCCCCCCCceEE
Confidence 1 11 00000000 000011234544 35566665543 344 5566654311111212210 1235788
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC--CCccccccccCCCCCC-ccCCCCCceEEE
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG--SSINTCAHADAQTGSG-SKPGDQNGMLWY 2448 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~--s~~~~~~vafSpdGk~-v~s~D~sv~Iwd 2448 (2548)
+.-..+ + .|..|+ ++-+..+| ..+++........... .......+....+|.+ +++..+.+..++
T Consensus 378 i~~d~~-------g-~lWigt-~~GL~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~ 445 (758)
T 3ott_A 378 IYEDKE-------Q-QLWIAT-DGSINRYD---YATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVD 445 (758)
T ss_dssp EEECTT-------S-CEEEEE-TTEEEEEE---TTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEE
T ss_pred EEECCC-------C-CEEEEe-CCcHhhcC---cCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEc
Confidence 776555 3 445555 45788999 4444332211101110 1111223333445555 555544455554
Q ss_pred cc-------------------cC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccC
Q 000054 2449 IP-------------------KA-HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRG 2508 (2548)
Q Consensus 2449 i~-------------------~g-H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~G 2508 (2548)
.. .+ ....|.++..+++|.+.+.++..+-|..+|..+++... +. . .. +.+
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~-~~--~--~~-----~~~ 515 (758)
T 3ott_A 446 KHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK-LF--A--DE-----LTG 515 (758)
T ss_dssp HHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE-EC--T--TT-----SCG
T ss_pred cccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE-ec--C--CC-----cCC
Confidence 21 01 12358999999999987744444557889988776543 21 0 00 011
Q ss_pred CCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2509 FGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2509 H~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
. ..+.++..+.+| |-.|+.+| +..++..++
T Consensus 516 -~----~~~~~i~~d~~g~lWigt~~G-l~~~~~~~~ 546 (758)
T 3ott_A 516 -E----KSPNYLLCDEDGLLWVGFHGG-VMRINPKDE 546 (758)
T ss_dssp -G----GCEEEEEECTTSCEEEEETTE-EEEECC--C
T ss_pred -C----cccceEEECCCCCEEEEecCc-eEEEecCCC
Confidence 1 224566777888 65566554 777776554
No 341
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.19 E-value=3.1e+02 Score=38.50 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=31.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccc
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
..|.++...++..++++-+.|+++|+|++.+++++.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~ 271 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE 271 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEe
Confidence 467888888888999999999999999999987654
No 342
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=32.69 E-value=3.9e+02 Score=31.55 Aligned_cols=101 Identities=15% Similarity=0.108 Sum_probs=54.9
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCce------eEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA------TATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~------l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVr 2296 (2548)
..++|||+|.+.++ .+|.++-.+..++.. -..+.. ... ..-.++.|.|+|.+.++ .||.|.
T Consensus 44 ~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~-------~Gw--~~F~a~~fD~~G~LYav--~dG~iy 110 (236)
T 1tl2_A 44 KFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGN-------GGW--NQFQFLFFDPNGYLYAV--SKDKLY 110 (236)
T ss_dssp SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEEC-------SCG--GGCSEEEECTTSCEEEE--ETTEEE
T ss_pred eeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecc-------ccc--ccceEEEECCCCCEEEe--CCCEEE
Confidence 58999999998887 667654444333111 111110 000 11478999999998887 669887
Q ss_pred EEEcCCCcccccccCccceeccC--CcccEEEEcCCCCEEEEE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSS--HAMDVSYITSSGSVIAAA 2337 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~g--H~~~V~afSpdGslLATg 2337 (2548)
-++-.+.......-. ....-.+ ..-...++.|+|.+.++.
T Consensus 111 r~~pP~~~~~~Wl~~-a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 111 KASPPQSDTDNWIAR-ATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp EESCCCSTTCCHHHH-SEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred EeCCCcCCCCceecc-ccEeccCCCCceEEEEECCCceEEEEe
Confidence 776533221111000 0000010 112334589999998885
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=31.07 E-value=1.6e+02 Score=34.74 Aligned_cols=103 Identities=11% Similarity=0.022 Sum_probs=60.2
Q ss_pred cccccccCCCCCCccCCCCCceEEEcccC---------CCCCE--------EEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000054 2424 NTCAHADAQTGSGSKPGDQNGMLWYIPKA---------HLGSV--------TRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2424 ~~~~vafSpdGk~v~s~D~sv~Iwdi~~g---------H~~~V--------tsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
....++++|+|.+.+. ..+.+|..... -...| .++.|+|+|.+.++ .||.|.-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 4457899999998444 44556664321 12233 68899999998887 5699987775431
Q ss_pred cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECC
Q 000054 2487 QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2487 ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~ 2542 (2548)
..- .+- .... .-+-+ -+..+..|.+.|+| |.+.. ||.++-+..+
T Consensus 118 ~~~-~Wl--~~a~------~vg~~--gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P 162 (236)
T 1tl2_A 118 DTD-NWI--ARAT------EVGSG--GWSGFKFLFFHPNGYLYAVH-GQQFYKALPP 162 (236)
T ss_dssp TTC-CHH--HHSE------EEECS--SGGGEEEEEECTTSCEEEEE-TTEEEEECCC
T ss_pred CCC-cee--cccc------EeccC--CCCceEEEEECCCceEEEEe-CCcEEecCCC
Confidence 110 000 0000 00000 12346788999999 76777 8886544433
No 344
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=26.97 E-value=3.5e+02 Score=34.68 Aligned_cols=117 Identities=9% Similarity=0.016 Sum_probs=60.4
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCC--CCCCCCCeEEEEEccC----CCEEEEEeC--C
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVP--PPYALASISALQFDHY----GHRFASAAL--D 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~--~~~H~~~VtsVaFSPd----G~~LaSGS~--D 2292 (2548)
-+.|+|.|+|. .++++...|.|++++.+.......+...+..-.. .....+....|+|+|+ +...++-+. +
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 47889999996 4555678899999975432111111111100000 0012367899999996 444443332 1
Q ss_pred ----------CcEEEEEcCCCc--ccccccCcc----ceeccCCcccEEEEcCCCCEEEEEe
Q 000054 2293 ----------GTVCTWQLEVGG--RSNVRPMES----CLCFSSHAMDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2293 ----------GtVrVWDl~tgk--~i~i~p~~s----~~t~~gH~~~V~afSpdGslLATgG 2338 (2548)
..|.-|.+..+. .......+. ......|...-..|.|||.+.++.|
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence 134446664321 100000000 1112346655556999999998887
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=26.27 E-value=1.5e+02 Score=36.81 Aligned_cols=184 Identities=9% Similarity=-0.062 Sum_probs=0.0
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcccccccCc---cceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc
Q 000054 2283 GHRFASAALDGTVCTWQLEVGGRSNVRPME---SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR 2359 (2548)
Q Consensus 2283 G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~---s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v 2359 (2548)
+..++.++.||.|...|.++|+..-..... ........... .++..++... +.||.+..+|... +...
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~-----~~~~~~vv~p--~~dG~l~a~~~~~--G~~~ 80 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRL-----ETYETLIIEP--FGDGNIYYFNAHQ--GLQK 80 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTT-----TSSEEEEECC--STTTEEEEEETTT--EEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccc-----cCCcEEEEEE--CCCCEEEEEECCC--CcEE
Q ss_pred eeeeccCCCeEEEEE--------------ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC----
Q 000054 2360 ASITCHEGGARSISV--------------FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS---- 2421 (2548)
Q Consensus 2360 ~sl~gHs~~VtSLaf--------------sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s---- 2421 (2548)
..+....-.-.+-.. ... .+.+|+.+|.+...| ..+|+.+..+.......
T Consensus 81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g---------~Vy~Gs~~g~l~ald---~~tG~~~W~~~~~~~~~~~~~ 148 (339)
T 2be1_A 81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDE---------KVYTGSMRTIMYTIN---MLNGEIISAFGPGSKNGYFGS 148 (339)
T ss_dssp EEEEHHHHHTTCSEEEECC----------CCE---------EEEECEEEEEEEEEE---TTTCCEEEEESTTCBCC----
T ss_pred eeeccccceeccccccCCCceeecccccccCC---------EEEEEecCCEEEEEE---CCCCcEEEEEecCCCcccccc
Q ss_pred Ccccccccc-----CCCCCC-ccCCCCCceEEEcccCCCCCEEEEEEeCC---------------CCEEEEEeCCCcEEE
Q 000054 2422 SINTCAHAD-----AQTGSG-SKPGDQNGMLWYIPKAHLGSVTRISTVPN---------------TSLFLTGSKDGDVKL 2480 (2548)
Q Consensus 2422 ~~~~~~vaf-----SpdGk~-v~s~D~sv~Iwdi~~gH~~~VtsLafSPd---------------G~~LaSGS~DGtIrI 2480 (2548)
....+.... ..++.. ++..+..+.+.+ ..+..-.+.--.+.+. +.+ +.++.||.|..
T Consensus 149 ~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A 226 (339)
T 2be1_A 149 QSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLA 226 (339)
T ss_dssp ----------------CCEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEE
T ss_pred cccccccccccccccCCCeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEE
Q ss_pred EECCCCcEE
Q 000054 2481 WDAKAAQLV 2489 (2548)
Q Consensus 2481 WDl~Tgell 2489 (2548)
.|..+|+.+
T Consensus 227 ~d~~~G~~~ 235 (339)
T 2be1_A 227 SDLDFRIAR 235 (339)
T ss_dssp ECSTTCCEE
T ss_pred EECCCCcEE
No 346
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=24.73 E-value=1e+03 Score=28.95 Aligned_cols=20 Identities=10% Similarity=0.323 Sum_probs=15.6
Q ss_pred CCCEEEEEEeCCCCEEEEEe
Q 000054 2454 LGSVTRISTVPNTSLFLTGS 2473 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS 2473 (2548)
...+..+++.|+|.+.++..
T Consensus 311 ~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 311 FGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp SCCEEEEEECTTSCEEEEEC
T ss_pred CCCeeEEEECCCCcEEEEEe
Confidence 35688999999998777664
No 347
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=21.03 E-value=1.5e+02 Score=42.37 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=32.9
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.+.+++..++..+++|-+.|+++||||+.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44566677888999999999999999999999998864
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=20.22 E-value=5.4e+02 Score=34.26 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=71.0
Q ss_pred EEEEcCCCCEEEEE-ECCCeEEEEEcCCCce-----e-----EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2224 AFSSHPLRPFFLVG-SSNTHIYLWEFGKDKA-----T-----ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2224 ~VsfSPdG~~LASG-S~DGsVrLWDl~tg~~-----l-----~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.+..+|||++++.+ --+.+|.++|+.+-.. + ..... .+. .-.-...+|.++|+...|-.-|
T Consensus 327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae------~e~--GlGPlHt~Fd~~G~aYTtlfid 398 (638)
T 3sbq_A 327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE------PEL--GLGPLHTTFDGRGNAYTTLFID 398 (638)
T ss_dssp CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC------CBC--CSCEEEEEECSSSEEEEEETTT
T ss_pred ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee------ccC--CCcccEEEECCCCceEeeeeec
Confidence 34567999998864 5688999999884211 0 00100 011 1457789999999777777899
Q ss_pred CcEEEEEcCCC------cccccccCccceeccCCcccEE-------EEcCCCCEEEEEeccCCCCeE----------EEE
Q 000054 2293 GTVCTWQLEVG------GRSNVRPMESCLCFSSHAMDVS-------YITSSGSVIAAAGHSSNGINV----------VVW 2349 (2548)
Q Consensus 2293 GtVrVWDl~tg------k~i~i~p~~s~~t~~gH~~~V~-------afSpdGslLATgG~SS~DGtV----------rIW 2349 (2548)
..|.-|++... +.. .+ ....+.-|-..-. ...++|++|++...-|.|+.+ ++.
T Consensus 399 SqvvkWni~~a~~~~~g~~~--~~--v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~Qli 474 (638)
T 3sbq_A 399 SQVVKWNMEEAVRAYKGEKV--NY--IKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLI 474 (638)
T ss_dssp TEEEEEEHHHHHHHHTTCCC--CC--EEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEE
T ss_pred ceEEEEeccHHHHHhcCccC--Ce--eeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeE
Confidence 99999999743 111 11 1111222222111 136799999987644566554 667
Q ss_pred ECCC
Q 000054 2350 DTLA 2353 (2548)
Q Consensus 2350 Dl~t 2353 (2548)
|+..
T Consensus 475 dIsG 478 (638)
T 3sbq_A 475 DISG 478 (638)
T ss_dssp ECSS
T ss_pred ecCC
Confidence 7753
Done!