Query 000055
Match_columns 2548
No_of_seqs 825 out of 3363
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 15:40:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1064 RAVE (regulator of V-A 100.0 0E+00 0E+00 3318.5 109.0 2126 31-2535 5-2439(2439)
2 PF12234 Rav1p_C: RAVE protein 100.0 1E-136 2E-141 1307.4 57.8 618 747-1483 1-631 (631)
3 KOG1064 RAVE (regulator of V-A 100.0 3.3E-41 7.1E-46 440.4 8.2 756 1571-2544 1540-2400(2439)
4 KOG0271 Notchless-like WD40 re 100.0 1.6E-32 3.5E-37 321.5 23.9 284 2212-2546 106-443 (480)
5 KOG0271 Notchless-like WD40 re 100.0 1.2E-29 2.6E-34 297.6 22.0 281 2214-2540 150-479 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 2.2E-28 4.8E-33 291.1 22.0 264 2222-2540 178-458 (459)
7 KOG0263 Transcription initiati 99.9 2.2E-26 4.8E-31 291.3 21.8 245 2222-2543 381-650 (707)
8 KOG0286 G-protein beta subunit 99.9 1.2E-24 2.7E-29 250.0 29.3 278 2214-2540 48-343 (343)
9 KOG0279 G protein beta subunit 99.9 5E-24 1.1E-28 244.3 31.0 245 2219-2542 63-313 (315)
10 KOG0315 G-protein beta subunit 99.9 2.6E-24 5.6E-29 242.8 25.6 260 2232-2545 11-291 (311)
11 KOG0319 WD40-repeat-containing 99.9 1.7E-24 3.8E-29 270.9 24.3 246 2222-2543 368-620 (775)
12 KOG0272 U4/U6 small nuclear ri 99.9 5.9E-25 1.3E-29 262.1 16.8 232 2214-2482 210-458 (459)
13 KOG0285 Pleiotropic regulator 99.9 4E-24 8.8E-29 249.8 22.4 243 2215-2545 145-392 (460)
14 KOG0279 G protein beta subunit 99.9 2.6E-23 5.7E-28 238.5 26.3 245 2214-2545 8-265 (315)
15 KOG0273 Beta-transducin family 99.9 2.2E-23 4.7E-28 251.1 26.6 247 2222-2542 238-523 (524)
16 KOG0295 WD40 repeat-containing 99.9 8.6E-24 1.9E-28 248.7 21.5 246 2214-2545 101-367 (406)
17 KOG0282 mRNA splicing factor [ 99.9 2.8E-24 6.2E-29 259.9 17.5 273 2215-2540 208-503 (503)
18 cd00200 WD40 WD40 domain, foun 99.9 3.1E-22 6.6E-27 231.4 33.6 264 2222-2540 12-289 (289)
19 KOG0291 WD40-repeat-containing 99.9 1E-22 2.2E-27 254.6 29.8 270 2220-2544 266-552 (893)
20 KOG0292 Vesicle coat complex C 99.9 4.6E-23 1E-27 259.4 25.8 275 2221-2543 11-322 (1202)
21 KOG0284 Polyadenylation factor 99.9 7.5E-24 1.6E-28 251.6 17.8 266 2222-2542 99-380 (464)
22 KOG0318 WD40 repeat stress pro 99.9 9.8E-22 2.1E-26 239.1 36.3 292 2216-2544 185-562 (603)
23 KOG0291 WD40-repeat-containing 99.9 3.2E-22 6.9E-27 250.2 32.6 251 2222-2545 353-615 (893)
24 KOG0296 Angio-associated migra 99.9 3.1E-22 6.8E-27 236.0 29.8 276 2215-2542 58-398 (399)
25 KOG0276 Vesicle coat complex C 99.9 2.4E-23 5.3E-28 255.5 21.1 238 2222-2544 16-259 (794)
26 KOG0266 WD40 repeat-containing 99.9 2.4E-22 5.2E-27 259.3 29.7 243 2222-2545 162-412 (456)
27 KOG0295 WD40 repeat-containing 99.9 7.4E-23 1.6E-27 240.9 21.5 246 2215-2540 144-404 (406)
28 KOG0281 Beta-TrCP (transducin 99.9 7.5E-24 1.6E-28 245.9 13.0 237 2214-2545 194-431 (499)
29 KOG0263 Transcription initiati 99.9 3.9E-23 8.4E-28 262.2 19.7 200 2217-2485 447-650 (707)
30 KOG0645 WD40 repeat protein [G 99.9 6.6E-22 1.4E-26 226.2 27.6 282 2222-2542 17-311 (312)
31 KOG0281 Beta-TrCP (transducin 99.9 1.9E-23 4E-28 242.7 14.5 249 2214-2545 230-480 (499)
32 KOG0286 G-protein beta subunit 99.9 3.5E-22 7.6E-27 230.1 23.5 232 2218-2482 96-343 (343)
33 KOG0319 WD40-repeat-containing 99.9 3.8E-22 8.3E-27 250.1 25.6 298 2222-2546 108-581 (775)
34 KOG0265 U5 snRNP-specific prot 99.9 9.4E-22 2E-26 227.5 26.5 271 2214-2539 40-335 (338)
35 KOG0316 Conserved WD40 repeat- 99.9 4.4E-22 9.5E-27 223.3 21.6 237 2222-2545 20-260 (307)
36 PLN00181 protein SPA1-RELATED; 99.9 8.5E-21 1.8E-25 260.4 34.0 284 2222-2541 486-792 (793)
37 KOG0293 WD40 repeat-containing 99.9 3.3E-21 7.2E-26 228.8 24.5 276 2216-2544 219-515 (519)
38 KOG0276 Vesicle coat complex C 99.9 1.5E-21 3.3E-26 239.9 22.2 238 2217-2538 53-295 (794)
39 KOG0313 Microtubule binding pr 99.9 5.1E-21 1.1E-25 226.5 24.8 260 2231-2542 115-418 (423)
40 KOG0275 Conserved WD40 repeat- 99.9 4.6E-22 1E-26 229.0 15.4 276 2222-2540 216-507 (508)
41 KOG0266 WD40 repeat-containing 99.9 6.9E-21 1.5E-25 245.8 27.2 240 2217-2542 199-454 (456)
42 KOG0973 Histone transcription 99.9 5E-21 1.1E-25 249.7 24.9 292 2222-2545 16-358 (942)
43 KOG0318 WD40 repeat stress pro 99.9 6.4E-20 1.4E-24 223.5 30.3 283 2219-2544 59-394 (603)
44 KOG0273 Beta-transducin family 99.9 1.8E-20 3.8E-25 226.3 24.1 277 2222-2545 181-485 (524)
45 KOG0315 G-protein beta subunit 99.9 2.5E-20 5.4E-25 211.0 23.2 214 2213-2492 75-296 (311)
46 KOG0641 WD40 repeat protein [G 99.8 3.3E-19 7.1E-24 198.3 28.3 289 2222-2542 35-349 (350)
47 KOG0306 WD40-repeat-containing 99.8 4.1E-20 9E-25 231.5 23.5 256 2211-2546 404-668 (888)
48 KOG0284 Polyadenylation factor 99.8 5.9E-21 1.3E-25 227.2 15.1 226 2222-2484 141-380 (464)
49 KOG0277 Peroxisomal targeting 99.8 1.2E-19 2.6E-24 206.0 22.9 238 2223-2543 12-266 (311)
50 KOG0274 Cdc4 and related F-box 99.8 6.9E-20 1.5E-24 237.8 23.9 234 2222-2546 211-445 (537)
51 KOG0310 Conserved WD40 repeat- 99.8 1.3E-19 2.9E-24 220.4 24.6 267 2222-2542 29-309 (487)
52 KOG0264 Nucleosome remodeling 99.8 4.9E-20 1.1E-24 223.3 20.8 271 2222-2544 127-406 (422)
53 KOG0640 mRNA cleavage stimulat 99.8 7.2E-20 1.6E-24 211.2 20.1 262 2222-2542 115-426 (430)
54 PTZ00421 coronin; Provisional 99.8 1E-18 2.3E-23 226.3 33.3 254 2223-2545 24-293 (493)
55 KOG0265 U5 snRNP-specific prot 99.8 9.4E-20 2E-24 211.1 20.8 237 2267-2543 43-297 (338)
56 KOG0645 WD40 repeat protein [G 99.8 2.9E-19 6.3E-24 204.8 24.5 226 2222-2484 64-311 (312)
57 KOG0278 Serine/threonine kinas 99.8 3E-20 6.4E-25 209.9 16.2 271 2222-2545 17-300 (334)
58 KOG0277 Peroxisomal targeting 99.8 5.6E-20 1.2E-24 208.7 17.9 235 2222-2541 63-308 (311)
59 KOG0268 Sof1-like rRNA process 99.8 4.5E-20 9.7E-25 217.2 16.9 267 2216-2542 61-345 (433)
60 KOG0643 Translation initiation 99.8 8.5E-19 1.8E-23 200.3 24.4 256 2222-2545 13-320 (327)
61 PLN00181 protein SPA1-RELATED; 99.8 1.6E-18 3.5E-23 238.1 31.7 261 2240-2544 457-740 (793)
62 KOG0274 Cdc4 and related F-box 99.8 6.9E-19 1.5E-23 228.5 25.8 234 2222-2546 252-486 (537)
63 KOG0285 Pleiotropic regulator 99.8 3.8E-19 8.3E-24 208.6 20.1 247 2215-2543 187-440 (460)
64 PTZ00420 coronin; Provisional 99.8 6.3E-18 1.4E-22 220.3 33.1 231 2237-2545 50-296 (568)
65 KOG0305 Anaphase promoting com 99.8 1.6E-18 3.5E-23 218.5 25.4 235 2222-2543 220-462 (484)
66 cd00200 WD40 WD40 domain, foun 99.8 8.7E-18 1.9E-22 194.4 28.2 232 2269-2545 7-252 (289)
67 PTZ00421 coronin; Provisional 99.8 1.3E-17 2.8E-22 216.2 32.3 207 2222-2492 78-298 (493)
68 KOG0292 Vesicle coat complex C 99.8 7E-19 1.5E-23 222.3 19.8 231 2271-2544 9-282 (1202)
69 KOG0299 U3 snoRNP-associated p 99.8 2.6E-18 5.6E-23 207.9 23.7 259 2221-2546 144-414 (479)
70 KOG1407 WD40 repeat protein [F 99.8 3.3E-18 7.1E-23 195.2 22.9 239 2222-2543 23-312 (313)
71 KOG0283 WD40 repeat-containing 99.8 1.1E-18 2.4E-23 224.0 21.3 239 2269-2544 265-578 (712)
72 KOG1446 Histone H3 (Lys4) meth 99.8 4.2E-17 9.2E-22 191.4 30.3 272 2221-2544 16-305 (311)
73 KOG0772 Uncharacterized conser 99.8 5.8E-18 1.3E-22 205.7 22.3 263 2214-2544 209-489 (641)
74 KOG0639 Transducin-like enhanc 99.8 1.3E-17 2.8E-22 201.3 23.6 268 2222-2541 422-703 (705)
75 KOG0301 Phospholipase A2-activ 99.8 1.8E-17 3.8E-22 207.7 22.8 267 2216-2543 9-289 (745)
76 KOG0288 WD40 repeat protein Ti 99.8 7.6E-18 1.6E-22 201.5 18.5 236 2222-2540 222-459 (459)
77 KOG0308 Conserved WD40 repeat- 99.8 4.9E-18 1.1E-22 211.1 17.4 236 2229-2543 35-286 (735)
78 KOG0306 WD40-repeat-containing 99.8 3.3E-17 7.3E-22 205.8 23.4 280 2222-2543 323-623 (888)
79 KOG0316 Conserved WD40 repeat- 99.8 2.4E-17 5.1E-22 185.7 19.1 199 2269-2546 15-217 (307)
80 KOG0275 Conserved WD40 repeat- 99.7 4.6E-18 9.9E-23 196.4 12.0 208 2272-2546 214-427 (508)
81 KOG1332 Vesicle coat complex C 99.7 5.6E-17 1.2E-21 183.9 20.2 244 2229-2542 21-286 (299)
82 PTZ00420 coronin; Provisional 99.7 3.3E-16 7.2E-21 204.4 29.1 211 2222-2487 77-296 (568)
83 KOG0296 Angio-associated migra 99.7 3.6E-16 7.8E-21 185.3 25.6 228 2222-2484 109-398 (399)
84 KOG0772 Uncharacterized conser 99.7 6.6E-17 1.4E-21 196.6 19.6 253 2263-2543 159-446 (641)
85 KOG0647 mRNA export protein (c 99.7 1.7E-16 3.6E-21 184.5 22.0 239 2222-2543 30-282 (347)
86 KOG1446 Histone H3 (Lys4) meth 99.7 7.1E-16 1.5E-20 181.3 27.0 234 2272-2545 15-265 (311)
87 KOG0293 WD40 repeat-containing 99.7 3.8E-17 8.3E-22 194.7 16.6 250 2199-2485 249-514 (519)
88 KOG0299 U3 snoRNP-associated p 99.7 3.7E-16 8E-21 189.5 23.7 240 2222-2539 205-453 (479)
89 KOG0640 mRNA cleavage stimulat 99.7 6E-17 1.3E-21 187.4 16.1 214 2270-2545 111-338 (430)
90 KOG0300 WD40 repeat-containing 99.7 1.5E-16 3.2E-21 184.0 18.9 287 2216-2544 143-478 (481)
91 KOG0282 mRNA splicing factor [ 99.7 7.6E-17 1.6E-21 196.3 17.0 248 2198-2482 239-503 (503)
92 KOG0308 Conserved WD40 repeat- 99.7 1.1E-16 2.4E-21 199.2 18.4 219 2214-2493 66-295 (735)
93 KOG0289 mRNA splicing factor [ 99.7 6.3E-16 1.4E-20 185.8 24.0 244 2214-2541 254-505 (506)
94 KOG0289 mRNA splicing factor [ 99.7 3.1E-16 6.6E-21 188.4 21.1 233 2222-2540 222-460 (506)
95 KOG0288 WD40 repeat protein Ti 99.7 6.2E-17 1.3E-21 193.8 14.5 240 2222-2546 178-421 (459)
96 KOG0269 WD40 repeat-containing 99.7 1.7E-16 3.8E-21 200.6 18.8 247 2222-2545 42-299 (839)
97 KOG0294 WD40 repeat-containing 99.7 1.2E-15 2.7E-20 178.2 24.2 260 2234-2544 4-283 (362)
98 KOG0310 Conserved WD40 repeat- 99.7 7.1E-16 1.5E-20 188.4 22.2 193 2222-2484 113-309 (487)
99 KOG1539 WD repeat protein [Gen 99.7 2.6E-15 5.6E-20 191.2 27.0 295 2222-2546 205-610 (910)
100 KOG0278 Serine/threonine kinas 99.7 8.8E-17 1.9E-21 182.2 12.1 234 2216-2489 54-302 (334)
101 KOG1036 Mitotic spindle checkp 99.7 2.8E-15 6.2E-20 175.4 23.9 236 2222-2544 16-264 (323)
102 KOG0643 Translation initiation 99.7 1.9E-15 4.2E-20 173.2 21.8 238 2216-2484 47-317 (327)
103 KOG0269 WD40 repeat-containing 99.7 2.5E-16 5.5E-21 199.1 16.1 228 2230-2543 99-341 (839)
104 KOG0305 Anaphase promoting com 99.7 1.8E-15 4E-20 191.1 23.3 232 2223-2543 181-420 (484)
105 KOG0313 Microtubule binding pr 99.7 1.2E-15 2.7E-20 181.4 19.9 205 2222-2484 196-418 (423)
106 KOG1408 WD40 repeat protein [F 99.7 1.1E-15 2.3E-20 190.1 20.0 240 2222-2543 462-714 (1080)
107 KOG0646 WD40 repeat protein [G 99.7 8.8E-16 1.9E-20 186.7 18.8 225 2222-2492 84-315 (476)
108 KOG0283 WD40 repeat-containing 99.7 1.6E-15 3.4E-20 195.4 21.2 239 2222-2484 270-576 (712)
109 KOG0302 Ribosome Assembly prot 99.7 2.6E-15 5.7E-20 178.3 21.4 204 2230-2485 164-379 (440)
110 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 4.5E-14 9.7E-19 169.2 31.8 256 2232-2545 2-282 (300)
111 KOG0264 Nucleosome remodeling 99.7 1.5E-15 3.3E-20 184.8 19.0 210 2270-2543 123-348 (422)
112 KOG2055 WD40 repeat protein [G 99.7 6.3E-15 1.4E-19 178.7 23.6 271 2222-2542 216-512 (514)
113 KOG1407 WD40 repeat protein [F 99.7 3.5E-15 7.6E-20 170.9 19.5 233 2268-2545 17-264 (313)
114 KOG0321 WD40 repeat-containing 99.7 2.7E-15 5.9E-20 186.8 20.0 275 2231-2545 64-394 (720)
115 KOG0646 WD40 repeat protein [G 99.7 4.3E-15 9.2E-20 180.8 21.3 245 2232-2545 51-310 (476)
116 KOG1332 Vesicle coat complex C 99.7 8.1E-16 1.8E-20 174.6 14.0 210 2269-2543 9-242 (299)
117 KOG0267 Microtubule severing p 99.6 2E-16 4.2E-21 198.7 9.9 227 2223-2536 32-261 (825)
118 KOG1274 WD40 repeat protein [G 99.6 1.8E-14 3.9E-19 185.7 27.4 250 2215-2543 11-263 (933)
119 KOG2048 WD40 repeat protein [G 99.6 2E-14 4.2E-19 180.8 26.6 300 2068-2542 12-319 (691)
120 KOG0650 WD40 repeat nucleolar 99.6 8.4E-15 1.8E-19 181.0 22.4 284 2217-2539 396-732 (733)
121 KOG0267 Microtubule severing p 99.6 2.3E-16 4.9E-21 198.1 8.5 223 2229-2544 2-228 (825)
122 KOG0300 WD40 repeat-containing 99.6 3E-15 6.5E-20 173.3 15.7 244 2216-2486 185-478 (481)
123 KOG1539 WD repeat protein [Gen 99.6 1.5E-13 3.3E-18 175.4 32.4 271 2222-2540 247-646 (910)
124 KOG4283 Transcription-coupled 99.6 5E-14 1.1E-18 162.9 25.3 220 2222-2486 46-278 (397)
125 KOG0294 WD40 repeat-containing 99.6 1.3E-14 2.9E-19 169.7 20.2 223 2222-2486 46-283 (362)
126 KOG4328 WD40 protein [Function 99.6 1.7E-14 3.6E-19 175.0 21.4 250 2222-2545 189-453 (498)
127 KOG0307 Vesicle coat complex C 99.6 3.4E-15 7.4E-20 196.4 15.9 244 2222-2545 67-330 (1049)
128 KOG0302 Ribosome Assembly prot 99.6 1.1E-14 2.5E-19 173.0 18.3 214 2266-2543 146-379 (440)
129 KOG2445 Nuclear pore complex c 99.6 4.4E-14 9.5E-19 164.9 21.3 251 2269-2542 11-318 (361)
130 KOG1408 WD40 repeat protein [F 99.6 6.2E-14 1.3E-18 174.8 23.8 286 2222-2545 327-674 (1080)
131 KOG2106 Uncharacterized conser 99.6 8.4E-13 1.8E-17 161.2 32.3 266 2222-2540 203-519 (626)
132 KOG2096 WD40 repeat protein [G 99.6 9.2E-14 2E-18 162.2 23.1 268 2217-2545 82-363 (420)
133 KOG0973 Histone transcription 99.6 4.9E-14 1.1E-18 185.3 21.1 209 2222-2487 72-358 (942)
134 KOG4283 Transcription-coupled 99.6 5.8E-14 1.3E-18 162.4 19.1 224 2270-2546 42-280 (397)
135 KOG0270 WD40 repeat-containing 99.6 4.9E-14 1.1E-18 170.9 19.2 242 2230-2544 191-451 (463)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 8.5E-13 1.8E-17 158.2 29.7 236 2222-2492 33-287 (300)
137 KOG0301 Phospholipase A2-activ 99.6 9.1E-14 2E-18 174.9 19.8 225 2269-2542 12-249 (745)
138 KOG1007 WD repeat protein TSSC 99.5 1.6E-13 3.4E-18 158.9 19.8 264 2222-2544 66-363 (370)
139 KOG0647 mRNA export protein (c 99.5 3.4E-13 7.3E-18 157.4 21.8 229 2222-2526 75-305 (347)
140 KOG0641 WD40 repeat protein [G 99.5 5.8E-13 1.3E-17 149.2 22.5 231 2222-2484 92-349 (350)
141 KOG0268 Sof1-like rRNA process 99.5 2.5E-14 5.4E-19 169.4 12.0 229 2268-2545 63-305 (433)
142 KOG1273 WD40 repeat protein [G 99.5 6.5E-13 1.4E-17 155.2 22.9 276 2215-2543 19-323 (405)
143 KOG1188 WD40 repeat protein [G 99.5 1.5E-13 3.2E-18 162.5 17.6 150 2232-2403 41-196 (376)
144 KOG1517 Guanine nucleotide bin 99.5 4.7E-13 1E-17 173.1 23.5 291 2222-2546 1067-1385(1387)
145 KOG1036 Mitotic spindle checkp 99.5 8E-13 1.7E-17 155.2 22.9 247 2222-2544 57-318 (323)
146 KOG2919 Guanine nucleotide-bin 99.5 4.4E-13 9.6E-18 157.1 20.3 243 2222-2543 52-328 (406)
147 KOG0321 WD40 repeat-containing 99.5 4.8E-13 1E-17 167.2 21.0 255 2210-2486 93-393 (720)
148 KOG2096 WD40 repeat protein [G 99.5 1E-12 2.2E-17 153.6 20.0 208 2268-2542 83-308 (420)
149 KOG2048 WD40 repeat protein [G 99.5 3.6E-12 7.7E-17 160.9 25.7 246 2222-2544 28-277 (691)
150 KOG1063 RNA polymerase II elon 99.5 2.7E-12 5.9E-17 161.8 23.8 300 2214-2544 184-604 (764)
151 KOG0639 Transducin-like enhanc 99.5 3.2E-13 6.9E-18 164.0 14.6 238 2267-2544 415-665 (705)
152 KOG4378 Nuclear protein COP1 [ 99.5 9.4E-13 2E-17 160.1 18.4 258 2238-2544 9-282 (673)
153 KOG4227 WD40 repeat protein [G 99.5 1.2E-12 2.6E-17 155.0 18.5 299 2216-2541 51-386 (609)
154 KOG0649 WD40 repeat protein [G 99.5 4.6E-12 9.9E-17 144.1 22.2 253 2222-2542 13-274 (325)
155 KOG2106 Uncharacterized conser 99.5 4.6E-12 1E-16 154.9 23.9 284 2222-2544 157-479 (626)
156 KOG1009 Chromatin assembly com 99.4 4.2E-12 9E-17 153.1 21.8 287 2222-2545 16-375 (434)
157 KOG1034 Transcriptional repres 99.4 1.2E-12 2.6E-17 154.1 16.4 246 2231-2542 105-383 (385)
158 KOG2445 Nuclear pore complex c 99.4 1.1E-11 2.4E-16 145.2 23.9 245 2222-2484 16-318 (361)
159 KOG0642 Cell-cycle nuclear pro 99.4 7.1E-13 1.5E-17 164.6 14.9 243 2269-2545 292-564 (577)
160 KOG0270 WD40 repeat-containing 99.4 2.5E-12 5.5E-17 156.3 18.8 207 2222-2490 246-455 (463)
161 KOG1007 WD repeat protein TSSC 99.4 5.4E-12 1.2E-16 146.3 20.3 226 2222-2484 126-361 (370)
162 KOG4378 Nuclear protein COP1 [ 99.4 2.2E-12 4.8E-17 156.9 17.2 220 2223-2526 83-305 (673)
163 KOG1063 RNA polymerase II elon 99.4 1.4E-11 3.1E-16 155.5 24.2 294 2216-2544 262-650 (764)
164 KOG1274 WD40 repeat protein [G 99.4 1.2E-11 2.6E-16 160.2 22.9 209 2269-2545 11-221 (933)
165 COG2319 FOG: WD40 repeat [Gene 99.4 2.7E-10 5.9E-15 137.7 31.3 238 2222-2545 68-317 (466)
166 KOG0303 Actin-binding protein 99.4 3.2E-11 6.9E-16 144.7 20.5 211 2266-2545 76-297 (472)
167 KOG2919 Guanine nucleotide-bin 99.3 1.7E-11 3.7E-16 144.1 17.4 230 2229-2533 121-361 (406)
168 COG2319 FOG: WD40 repeat [Gene 99.3 6.6E-10 1.4E-14 134.4 31.5 233 2228-2545 119-362 (466)
169 KOG1445 Tumor-specific antigen 99.3 9.3E-11 2E-15 145.4 23.9 117 2219-2353 128-249 (1012)
170 KOG1538 Uncharacterized conser 99.3 3.1E-11 6.7E-16 150.1 19.7 265 2218-2542 11-293 (1081)
171 KOG4328 WD40 protein [Function 99.3 2E-10 4.3E-15 140.4 26.3 249 2222-2543 237-496 (498)
172 KOG2055 WD40 repeat protein [G 99.3 8E-11 1.7E-15 143.7 21.7 201 2272-2543 214-418 (514)
173 KOG1963 WD40 repeat protein [G 99.3 1.4E-10 3.1E-15 150.7 25.1 279 2222-2543 208-539 (792)
174 KOG1240 Protein kinase contain 99.3 2.2E-10 4.9E-15 151.4 26.4 288 2198-2544 1031-1336(1431)
175 KOG1587 Cytoplasmic dynein int 99.3 1.2E-10 2.5E-15 151.7 23.5 253 2222-2546 245-520 (555)
176 KOG0322 G-protein beta subunit 99.3 2.3E-11 4.9E-16 140.2 14.9 247 2222-2541 17-322 (323)
177 KOG1334 WD40 repeat protein [G 99.3 8.2E-12 1.8E-16 152.8 11.9 289 2214-2543 135-467 (559)
178 KOG0307 Vesicle coat complex C 99.3 1E-11 2.2E-16 164.4 12.5 204 2222-2487 119-330 (1049)
179 KOG0644 Uncharacterized conser 99.3 7.1E-12 1.5E-16 159.4 9.8 264 2215-2541 184-467 (1113)
180 KOG1034 Transcriptional repres 99.3 8.7E-11 1.9E-15 138.8 17.5 279 2222-2545 41-340 (385)
181 KOG0642 Cell-cycle nuclear pro 99.2 4.7E-11 1E-15 148.8 14.6 251 2222-2492 297-569 (577)
182 KOG0290 Conserved WD40 repeat- 99.2 2.5E-10 5.4E-15 133.0 19.3 249 2222-2544 47-320 (364)
183 KOG1310 WD40 repeat protein [G 99.2 1.3E-10 2.8E-15 143.1 17.7 250 2211-2492 40-311 (758)
184 KOG1517 Guanine nucleotide bin 99.2 2.3E-10 5E-15 149.0 20.8 266 2201-2487 1093-1384(1387)
185 KOG0771 Prolactin regulatory e 99.2 1.2E-10 2.6E-15 142.0 16.3 201 2223-2485 148-355 (398)
186 KOG1445 Tumor-specific antigen 99.2 1.8E-10 3.9E-15 142.9 17.6 243 2228-2544 588-846 (1012)
187 PRK11028 6-phosphogluconolacto 99.2 2.9E-09 6.2E-14 132.5 28.1 270 2234-2542 5-304 (330)
188 KOG0303 Actin-binding protein 99.2 3E-10 6.5E-15 136.6 18.3 212 2216-2488 76-298 (472)
189 KOG1273 WD40 repeat protein [G 99.2 5.7E-10 1.2E-14 131.1 18.9 239 2274-2546 26-284 (405)
190 KOG0644 Uncharacterized conser 99.2 4.9E-11 1.1E-15 152.0 10.8 233 2268-2545 187-429 (1113)
191 KOG1188 WD40 repeat protein [G 99.2 5.3E-10 1.1E-14 133.1 17.7 195 2284-2545 41-245 (376)
192 KOG1524 WD40 repeat-containing 99.2 5.9E-10 1.3E-14 137.2 17.3 137 2232-2401 76-214 (737)
193 KOG1272 WD40-repeat-containing 99.1 1.3E-10 2.8E-15 141.8 10.2 226 2223-2540 133-360 (545)
194 KOG0290 Conserved WD40 repeat- 99.1 1.7E-09 3.8E-14 126.2 18.7 208 2222-2485 99-319 (364)
195 KOG1538 Uncharacterized conser 99.1 1.1E-09 2.5E-14 136.6 17.0 234 2215-2484 47-293 (1081)
196 KOG0650 WD40 repeat nucleolar 99.1 2.9E-09 6.3E-14 133.1 20.1 200 2222-2481 524-732 (733)
197 KOG0771 Prolactin regulatory e 99.1 9.2E-09 2E-13 125.9 24.0 186 2323-2543 148-355 (398)
198 KOG0649 WD40 repeat protein [G 99.1 2.4E-09 5.2E-14 122.4 17.5 214 2272-2544 11-237 (325)
199 KOG2110 Uncharacterized conser 99.1 1.3E-08 2.8E-13 122.7 24.2 233 2222-2544 8-250 (391)
200 KOG1009 Chromatin assembly com 99.1 7.2E-10 1.6E-14 134.2 13.2 172 2272-2492 14-203 (434)
201 KOG1272 WD40-repeat-containing 99.1 3.2E-10 6.9E-15 138.5 9.2 228 2222-2488 173-413 (545)
202 PRK01742 tolB translocation pr 99.0 7.3E-09 1.6E-13 134.0 21.7 212 2240-2541 183-400 (429)
203 KOG1587 Cytoplasmic dynein int 99.0 2.2E-08 4.8E-13 130.9 25.9 207 2231-2485 305-517 (555)
204 KOG2110 Uncharacterized conser 99.0 7.6E-08 1.6E-12 116.2 28.0 204 2216-2486 43-250 (391)
205 PRK11028 6-phosphogluconolacto 99.0 6.9E-08 1.5E-12 120.3 27.8 242 2223-2488 38-310 (330)
206 PRK01742 tolB translocation pr 99.0 1.3E-08 2.8E-13 131.7 21.6 196 2222-2492 206-411 (429)
207 KOG1523 Actin-related protein 99.0 2.6E-08 5.7E-13 118.2 21.9 228 2222-2492 13-245 (361)
208 KOG1310 WD40 repeat protein [G 99.0 3.5E-09 7.5E-14 130.9 14.9 227 2267-2545 46-306 (758)
209 KOG1523 Actin-related protein 99.0 7.4E-09 1.6E-13 122.7 16.5 215 2272-2544 11-238 (361)
210 KOG2394 WD40 protein DMR-N9 [G 98.9 1.7E-08 3.7E-13 125.4 18.0 187 2229-2492 183-370 (636)
211 KOG1354 Serine/threonine prote 98.9 2.4E-08 5.2E-13 118.9 18.5 286 2222-2546 28-363 (433)
212 KOG2111 Uncharacterized conser 98.9 1.4E-07 2.9E-12 112.4 24.3 237 2223-2544 9-258 (346)
213 KOG0322 G-protein beta subunit 98.9 6.4E-09 1.4E-13 120.5 12.1 155 2233-2402 167-322 (323)
214 KOG4227 WD40 repeat protein [G 98.9 5.8E-08 1.3E-12 116.2 18.7 247 2268-2543 53-323 (609)
215 KOG1963 WD40 repeat protein [G 98.8 6.8E-07 1.5E-11 117.4 26.6 285 2223-2543 164-488 (792)
216 KOG1240 Protein kinase contain 98.8 1.2E-07 2.6E-12 126.4 19.6 214 2270-2546 1047-1277(1431)
217 PRK03629 tolB translocation pr 98.8 2.7E-06 5.8E-11 110.5 30.1 217 2241-2545 179-409 (429)
218 KOG0974 WD-repeat protein WDR6 98.7 1.5E-07 3.3E-12 124.8 18.3 201 2272-2544 88-290 (967)
219 PF08662 eIF2A: Eukaryotic tra 98.7 3.1E-07 6.6E-12 107.0 18.9 150 2326-2545 12-182 (194)
220 KOG3881 Uncharacterized conser 98.7 3.7E-07 7.9E-12 111.1 19.8 238 2229-2544 67-322 (412)
221 PRK03629 tolB translocation pr 98.7 7.5E-07 1.6E-11 115.6 24.4 200 2222-2492 201-413 (429)
222 KOG1524 WD40 repeat-containing 98.7 6.4E-08 1.4E-12 119.8 13.6 246 2270-2538 13-282 (737)
223 KOG4497 Uncharacterized conser 98.7 2.4E-06 5.2E-11 101.7 25.7 267 2222-2535 51-425 (447)
224 KOG2111 Uncharacterized conser 98.7 4.9E-06 1.1E-10 99.5 28.2 180 2241-2486 75-258 (346)
225 KOG3881 Uncharacterized conser 98.7 4E-07 8.6E-12 110.8 19.3 200 2231-2491 115-327 (412)
226 KOG1334 WD40 repeat protein [G 98.7 1.8E-07 4E-12 115.6 15.7 256 2268-2545 139-427 (559)
227 KOG4497 Uncharacterized conser 98.7 1.1E-07 2.4E-12 112.6 13.0 222 2225-2484 14-240 (447)
228 PRK02889 tolB translocation pr 98.7 1.6E-06 3.6E-11 112.4 24.7 164 2271-2489 195-365 (427)
229 PRK05137 tolB translocation pr 98.7 4.4E-06 9.5E-11 108.6 28.4 213 2241-2545 182-415 (435)
230 PRK02889 tolB translocation pr 98.7 1.5E-06 3.2E-11 112.8 23.4 201 2222-2492 198-410 (427)
231 PF08662 eIF2A: Eukaryotic tra 98.6 1.2E-06 2.5E-11 102.2 19.6 160 2221-2413 7-185 (194)
232 KOG2139 WD40 repeat protein [G 98.6 3.7E-06 8E-11 101.4 23.8 240 2217-2486 96-385 (445)
233 KOG2321 WD40 repeat protein [G 98.6 1E-06 2.2E-11 110.6 19.5 248 2222-2545 54-305 (703)
234 PRK04922 tolB translocation pr 98.6 3.1E-06 6.7E-11 110.0 24.9 217 2241-2545 184-414 (433)
235 KOG0280 Uncharacterized conser 98.6 6.4E-07 1.4E-11 105.8 16.4 233 2239-2544 44-286 (339)
236 PRK04922 tolB translocation pr 98.6 3.4E-06 7.4E-11 109.6 23.7 197 2222-2492 206-418 (433)
237 KOG2394 WD40 protein DMR-N9 [G 98.6 6.2E-07 1.3E-11 112.0 15.4 150 2210-2411 210-367 (636)
238 PF02239 Cytochrom_D1: Cytochr 98.6 1.4E-05 3.1E-10 101.8 27.9 280 2223-2545 40-350 (369)
239 PRK05137 tolB translocation pr 98.5 1E-05 2.2E-10 105.3 26.0 196 2222-2488 204-416 (435)
240 KOG0974 WD-repeat protein WDR6 98.5 1.3E-06 2.7E-11 116.5 16.7 190 2229-2485 97-289 (967)
241 TIGR02800 propeller_TolB tol-p 98.5 2.9E-05 6.3E-10 99.8 28.2 181 2240-2488 169-358 (417)
242 KOG0309 Conserved WD40 repeat- 98.5 5.2E-07 1.1E-11 115.0 10.7 151 2229-2403 79-232 (1081)
243 KOG4547 WD40 repeat-containing 98.4 6.3E-06 1.4E-10 105.1 18.9 212 2229-2543 3-221 (541)
244 KOG0280 Uncharacterized conser 98.4 1E-05 2.2E-10 96.0 17.9 230 2233-2486 87-335 (339)
245 KOG2315 Predicted translation 98.4 5.2E-05 1.1E-09 96.3 24.9 273 2222-2545 37-393 (566)
246 PF10282 Lactonase: Lactonase, 98.3 0.00019 4E-09 91.0 29.3 260 2223-2546 40-328 (345)
247 TIGR02800 propeller_TolB tol-p 98.3 8.5E-05 1.8E-09 95.5 25.4 149 2222-2402 192-353 (417)
248 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00042 9.1E-09 87.5 30.5 258 2241-2545 27-333 (352)
249 KOG2139 WD40 repeat protein [G 98.3 2.6E-05 5.7E-10 94.4 18.7 190 2272-2538 99-307 (445)
250 PRK04792 tolB translocation pr 98.3 0.00012 2.5E-09 96.0 26.4 196 2272-2544 218-427 (448)
251 KOG1409 Uncharacterized conser 98.3 3.5E-05 7.6E-10 93.0 19.3 197 2222-2485 71-271 (404)
252 COG5170 CDC55 Serine/threonine 98.3 1.7E-05 3.6E-10 94.0 16.0 282 2222-2541 29-366 (460)
253 PRK00178 tolB translocation pr 98.2 0.00022 4.8E-09 92.7 27.7 213 2242-2544 180-408 (430)
254 PRK00178 tolB translocation pr 98.2 0.00018 4E-09 93.4 26.1 151 2222-2402 201-362 (430)
255 PF02239 Cytochrom_D1: Cytochr 98.2 0.00021 4.6E-09 91.3 25.3 194 2234-2493 9-211 (369)
256 PRK04792 tolB translocation pr 98.2 0.00018 4E-09 94.1 24.9 147 2222-2400 220-377 (448)
257 PRK01029 tolB translocation pr 98.2 0.0002 4.4E-09 93.2 24.6 203 2223-2490 188-409 (428)
258 PRK01029 tolB translocation pr 98.2 0.00037 8E-09 90.9 27.0 205 2272-2545 185-406 (428)
259 KOG1409 Uncharacterized conser 98.1 5.2E-05 1.1E-09 91.6 16.8 237 2268-2544 21-272 (404)
260 KOG1354 Serine/threonine prote 98.1 3.3E-05 7.2E-10 93.0 14.4 220 2272-2542 26-301 (433)
261 PLN02919 haloacid dehalogenase 98.1 0.00097 2.1E-08 95.3 31.5 283 2225-2546 573-892 (1057)
262 KOG4714 Nucleoporin [Nuclear s 98.1 5.3E-05 1.2E-09 88.7 14.8 213 2220-2485 37-255 (319)
263 KOG4532 WD40-like repeat conta 98.1 0.00019 4.1E-09 84.5 18.8 198 2231-2492 84-290 (344)
264 KOG4190 Uncharacterized conser 98.0 9.5E-06 2.1E-10 100.6 7.8 176 2267-2492 731-914 (1034)
265 KOG3914 WD repeat protein WDR4 98.0 5.3E-05 1.2E-09 93.4 14.0 78 2451-2545 148-226 (390)
266 COG2706 3-carboxymuconate cycl 98.0 0.0023 4.9E-08 79.0 27.5 265 2240-2544 15-323 (346)
267 COG5354 Uncharacterized protei 98.0 0.00044 9.4E-09 87.3 21.3 235 2222-2493 35-314 (561)
268 KOG2321 WD40 repeat protein [G 98.0 0.0001 2.2E-09 93.5 15.9 199 2223-2485 137-344 (703)
269 KOG2314 Translation initiation 98.0 0.00043 9.3E-09 87.7 20.6 264 2222-2543 213-526 (698)
270 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.0016 3.5E-08 82.4 26.0 243 2227-2492 53-338 (352)
271 PLN02919 haloacid dehalogenase 97.9 0.0011 2.3E-08 95.0 26.9 230 2223-2488 627-892 (1057)
272 KOG3914 WD repeat protein WDR4 97.9 7.4E-05 1.6E-09 92.2 13.3 168 2274-2493 65-232 (390)
273 PF10282 Lactonase: Lactonase, 97.9 0.0038 8.3E-08 79.2 28.3 224 2222-2490 89-330 (345)
274 PF04762 IKI3: IKI3 family; I 97.9 0.0033 7.2E-08 88.7 29.7 296 2222-2544 78-458 (928)
275 KOG2041 WD40 repeat protein [G 97.9 0.00078 1.7E-08 86.7 20.8 236 2218-2476 13-280 (1189)
276 TIGR03300 assembly_YfgL outer 97.8 0.0039 8.4E-08 79.7 26.8 255 2230-2539 104-376 (377)
277 PF15492 Nbas_N: Neuroblastoma 97.8 0.0054 1.2E-07 74.0 25.5 228 2226-2493 4-268 (282)
278 TIGR03300 assembly_YfgL outer 97.8 0.0027 5.8E-08 81.1 24.9 260 2231-2546 65-342 (377)
279 KOG4190 Uncharacterized conser 97.8 9E-05 2E-09 92.2 10.4 213 2222-2492 738-956 (1034)
280 KOG2695 WD40 repeat protein [G 97.7 0.0001 2.2E-09 89.1 10.0 161 2276-2493 216-385 (425)
281 KOG0882 Cyclophilin-related pe 97.7 0.00038 8.2E-09 86.5 14.6 265 2231-2545 20-308 (558)
282 KOG4547 WD40 repeat-containing 97.7 0.00043 9.3E-09 88.9 15.2 149 2230-2403 69-220 (541)
283 KOG1275 PAB-dependent poly(A) 97.7 0.00057 1.2E-08 90.5 15.6 189 2230-2482 146-340 (1118)
284 PF04762 IKI3: IKI3 family; I 97.6 0.033 7.2E-07 78.9 34.0 221 2222-2486 212-458 (928)
285 COG5170 CDC55 Serine/threonine 97.6 0.00068 1.5E-08 80.8 13.3 222 2271-2544 26-311 (460)
286 COG2706 3-carboxymuconate cycl 97.5 0.031 6.8E-07 69.3 27.2 247 2223-2489 43-328 (346)
287 KOG2314 Translation initiation 97.5 0.014 3.1E-07 74.6 23.7 275 2222-2546 252-577 (698)
288 COG4946 Uncharacterized protei 97.4 0.026 5.7E-07 71.0 24.9 165 2230-2436 331-502 (668)
289 KOG0309 Conserved WD40 repeat- 97.4 0.00047 1E-08 89.2 9.7 201 2272-2544 25-234 (1081)
290 PF07433 DUF1513: Protein of u 97.4 0.017 3.7E-07 71.4 22.7 205 2273-2492 6-255 (305)
291 KOG4714 Nucleoporin [Nuclear s 97.4 0.00059 1.3E-08 80.3 9.4 73 2456-2545 181-257 (319)
292 PF00400 WD40: WD domain, G-be 97.4 0.00045 9.7E-09 59.2 6.4 35 2448-2482 5-39 (39)
293 KOG2315 Predicted translation 97.3 0.011 2.4E-07 76.0 20.2 150 2222-2402 220-389 (566)
294 PRK04043 tolB translocation pr 97.3 0.036 7.8E-07 72.5 24.9 159 2272-2489 188-362 (419)
295 KOG2041 WD40 repeat protein [G 97.2 0.0046 1E-07 80.0 15.2 222 2272-2533 15-279 (1189)
296 KOG1832 HIV-1 Vpr-binding prot 97.2 0.00025 5.3E-09 92.7 4.2 192 2270-2493 1100-1300(1516)
297 COG4946 Uncharacterized protei 97.2 0.047 1E-06 68.9 23.3 196 2229-2490 276-483 (668)
298 KOG2695 WD40 repeat protein [G 97.2 0.0011 2.3E-08 80.6 9.0 151 2235-2414 228-384 (425)
299 COG5354 Uncharacterized protei 97.2 0.069 1.5E-06 68.4 24.9 246 2222-2544 74-397 (561)
300 PF13360 PQQ_2: PQQ-like domai 97.2 0.079 1.7E-06 62.8 24.8 226 2240-2546 2-234 (238)
301 KOG1912 WD40 repeat protein [G 97.2 0.027 6E-07 74.2 21.7 258 2223-2543 19-305 (1062)
302 PF08450 SGL: SMP-30/Gluconola 97.1 0.21 4.6E-06 60.2 28.2 207 2224-2492 4-220 (246)
303 PRK04043 tolB translocation pr 97.1 0.077 1.7E-06 69.5 25.6 138 2222-2393 190-338 (419)
304 PF00400 WD40: WD domain, G-be 97.1 0.00097 2.1E-08 57.1 5.2 38 2357-2401 2-39 (39)
305 KOG4532 WD40-like repeat conta 97.1 0.037 7.9E-07 66.1 19.5 190 2283-2544 84-284 (344)
306 KOG2066 Vacuolar assembly/sort 96.9 0.013 2.9E-07 77.8 16.3 194 2272-2542 40-233 (846)
307 KOG1275 PAB-dependent poly(A) 96.9 0.0089 1.9E-07 79.9 14.4 181 2282-2540 146-340 (1118)
308 KOG2066 Vacuolar assembly/sort 96.9 0.018 3.8E-07 76.7 16.7 181 2231-2453 49-236 (846)
309 PRK11138 outer membrane biogen 96.8 0.3 6.5E-06 63.3 27.4 256 2231-2542 120-394 (394)
310 PF13360 PQQ_2: PQQ-like domai 96.8 0.11 2.4E-06 61.6 21.6 191 2229-2490 34-236 (238)
311 KOG1920 IkappaB kinase complex 96.8 0.18 3.9E-06 70.2 25.4 207 2222-2486 71-324 (1265)
312 KOG1912 WD40 repeat protein [G 96.8 0.037 8.1E-07 73.0 18.1 255 2223-2544 234-553 (1062)
313 KOG0882 Cyclophilin-related pe 96.7 0.01 2.2E-07 74.4 12.1 219 2269-2547 7-236 (558)
314 PF15492 Nbas_N: Neuroblastoma 96.7 0.095 2.1E-06 63.7 19.5 168 2222-2403 46-259 (282)
315 PRK11138 outer membrane biogen 96.6 0.27 5.8E-06 63.7 24.4 274 2231-2546 69-357 (394)
316 KOG1645 RING-finger-containing 96.3 0.12 2.5E-06 64.9 17.4 73 2221-2304 195-269 (463)
317 PF08450 SGL: SMP-30/Gluconola 96.3 0.88 1.9E-05 55.0 24.9 165 2222-2414 42-220 (246)
318 PF06433 Me-amine-dh_H: Methyl 96.2 1.6 3.6E-05 55.2 26.7 259 2241-2546 17-324 (342)
319 PF11768 DUF3312: Protein of u 96.1 0.7 1.5E-05 61.0 23.9 74 2452-2545 257-332 (545)
320 KOG3621 WD40 repeat-containing 96.1 0.36 7.7E-06 64.4 21.2 142 2220-2377 36-181 (726)
321 KOG1008 Uncharacterized conser 96.0 0.004 8.7E-08 80.6 2.9 205 2222-2484 61-275 (783)
322 KOG2114 Vacuolar assembly/sort 95.8 0.96 2.1E-05 61.6 23.3 205 2222-2492 28-251 (933)
323 PF00780 CNH: CNH domain; Int 95.7 2.4 5.2E-05 51.9 25.2 229 2229-2493 5-264 (275)
324 KOG3617 WD40 and TPR repeat-co 95.6 0.13 2.9E-06 68.3 14.0 106 2224-2352 20-131 (1416)
325 KOG2114 Vacuolar assembly/sort 95.6 0.28 6.1E-06 66.3 17.2 191 2323-2544 27-245 (933)
326 PF11768 DUF3312: Protein of u 95.6 0.04 8.6E-07 72.1 9.4 70 2222-2303 262-331 (545)
327 KOG4649 PQQ (pyrrolo-quinoline 95.5 2.7 5.8E-05 50.9 22.9 67 2230-2307 62-129 (354)
328 KOG1832 HIV-1 Vpr-binding prot 95.5 0.03 6.5E-07 74.3 8.0 181 2212-2436 1092-1315(1516)
329 KOG3617 WD40 and TPR repeat-co 95.3 0.16 3.5E-06 67.7 13.3 73 2220-2302 60-132 (1416)
330 PF02897 Peptidase_S9_N: Proly 95.2 13 0.00028 48.6 31.0 115 2222-2353 126-261 (414)
331 KOG1920 IkappaB kinase complex 94.8 1.3 2.7E-05 62.5 20.1 168 2222-2403 112-322 (1265)
332 KOG1008 Uncharacterized conser 94.6 0.017 3.6E-07 75.2 2.0 203 2272-2542 57-275 (783)
333 PRK02888 nitrous-oxide reducta 94.5 4.4 9.5E-05 55.1 23.9 280 2234-2543 69-405 (635)
334 PF04053 Coatomer_WDAD: Coatom 94.5 3.4 7.4E-05 54.7 22.8 138 2222-2402 35-172 (443)
335 PF00930 DPPIV_N: Dipeptidyl p 94.2 7.6 0.00016 49.9 24.6 99 2228-2338 1-119 (353)
336 PF08596 Lgl_C: Lethal giant l 94.0 4.4 9.4E-05 53.1 22.1 229 2220-2492 2-298 (395)
337 smart00320 WD40 WD40 repeats. 93.9 0.12 2.5E-06 41.1 5.0 32 2451-2482 9-40 (40)
338 PF06977 SdiA-regulated: SdiA- 93.7 9.6 0.00021 47.0 22.9 212 2272-2539 22-247 (248)
339 KOG3621 WD40 repeat-containing 93.5 1 2.2E-05 60.4 15.0 76 2223-2302 80-155 (726)
340 PF03178 CPSF_A: CPSF A subuni 93.4 2.7 5.9E-05 53.0 18.4 183 2241-2484 2-202 (321)
341 PF04841 Vps16_N: Vps16, N-ter 93.3 9.1 0.0002 50.4 23.5 39 2454-2492 216-254 (410)
342 smart00320 WD40 WD40 repeats. 93.3 0.16 3.5E-06 40.3 4.9 38 2357-2401 3-40 (40)
343 PF07433 DUF1513: Protein of u 93.3 8.9 0.00019 48.3 21.9 164 2214-2414 49-255 (305)
344 KOG1645 RING-finger-containing 93.1 3.1 6.8E-05 52.9 17.4 78 2316-2405 188-268 (463)
345 KOG4640 Anaphase-promoting com 93.0 0.29 6.3E-06 64.5 8.9 74 2222-2306 23-97 (665)
346 PF08553 VID27: VID27 cytoplas 92.4 4.7 0.0001 56.5 19.6 141 2283-2483 493-646 (794)
347 COG3490 Uncharacterized protei 92.2 10 0.00023 46.7 19.6 233 2274-2540 70-346 (366)
348 cd00216 PQQ_DH Dehydrogenases 92.1 30 0.00066 46.6 26.5 71 2231-2306 61-133 (488)
349 cd00216 PQQ_DH Dehydrogenases 92.1 28 0.0006 47.0 26.1 29 2465-2493 405-433 (488)
350 TIGR03118 PEPCTERM_chp_1 conse 90.9 53 0.0011 41.6 24.0 239 2222-2524 25-307 (336)
351 PF08596 Lgl_C: Lethal giant l 90.7 19 0.00041 47.3 21.7 125 2273-2402 3-172 (395)
352 PF12657 TFIIIC_delta: Transcr 90.4 0.71 1.5E-05 53.5 7.7 81 98-183 8-130 (173)
353 KOG4441 Proteins containing BT 90.1 5.9 0.00013 54.3 17.1 147 2230-2401 332-497 (571)
354 PF08553 VID27: VID27 cytoplas 90.1 5.8 0.00012 55.6 16.9 153 2330-2541 492-646 (794)
355 PF06977 SdiA-regulated: SdiA- 89.7 24 0.00052 43.6 20.2 170 2222-2414 24-208 (248)
356 KOG4640 Anaphase-promoting com 89.7 1.1 2.5E-05 59.3 9.3 80 2366-2492 20-100 (665)
357 PF06433 Me-amine-dh_H: Methyl 89.3 43 0.00094 43.0 22.2 205 2225-2493 100-329 (342)
358 KOG2079 Vacuolar assembly/sort 89.2 1.3 2.8E-05 61.7 9.5 103 2385-2541 99-202 (1206)
359 KOG4649 PQQ (pyrrolo-quinoline 88.8 69 0.0015 39.5 23.2 121 2232-2376 24-145 (354)
360 PHA02713 hypothetical protein; 88.4 5.7 0.00012 54.3 15.1 25 2465-2489 512-538 (557)
361 PF14783 BBS2_Mid: Ciliary BBS 87.6 14 0.00031 40.1 14.2 106 2369-2538 2-110 (111)
362 PRK02888 nitrous-oxide reducta 87.5 13 0.00029 50.7 17.1 197 2227-2485 200-405 (635)
363 PF14783 BBS2_Mid: Ciliary BBS 87.5 17 0.00036 39.6 14.6 95 2327-2479 10-109 (111)
364 PF04053 Coatomer_WDAD: Coatom 87.2 14 0.00031 49.1 17.1 135 2325-2542 38-173 (443)
365 PHA02713 hypothetical protein; 87.0 26 0.00057 48.0 20.1 71 2282-2358 303-381 (557)
366 COG3391 Uncharacterized conser 86.8 1E+02 0.0022 40.4 24.5 203 2223-2492 77-291 (381)
367 KOG4441 Proteins containing BT 86.3 39 0.00084 46.6 21.1 138 2231-2396 285-439 (571)
368 PRK10115 protease 2; Provision 85.5 1.7E+02 0.0037 41.5 27.1 114 2222-2353 129-256 (686)
369 COG0823 TolB Periplasmic compo 85.1 32 0.0007 45.7 18.8 154 2220-2401 193-356 (425)
370 PF04841 Vps16_N: Vps16, N-ter 84.8 47 0.001 43.9 20.2 48 2345-2403 62-109 (410)
371 PF07995 GSDH: Glucose / Sorbo 84.5 1.3E+02 0.0029 38.6 24.1 111 2223-2338 5-132 (331)
372 COG0823 TolB Periplasmic compo 84.3 30 0.00066 45.9 18.0 112 2272-2402 193-311 (425)
373 PF12894 Apc4_WD40: Anaphase-p 81.4 3.3 7.1E-05 38.3 5.4 36 2453-2489 10-45 (47)
374 PHA03098 kelch-like protein; P 81.3 30 0.00065 46.9 17.0 111 2230-2356 294-418 (534)
375 KOG2395 Protein involved in va 81.3 14 0.00029 48.9 12.5 148 2329-2483 343-499 (644)
376 KOG2444 WD40 repeat protein [G 81.2 3.8 8.1E-05 49.2 7.2 143 2286-2485 33-178 (238)
377 PF03178 CPSF_A: CPSF A subuni 79.4 50 0.0011 41.8 17.0 163 96-284 90-264 (321)
378 PHA02790 Kelch-like protein; P 78.7 40 0.00086 45.5 16.6 108 2231-2354 272-386 (480)
379 PF14583 Pectate_lyase22: Olig 78.0 2.4E+02 0.0052 37.2 23.6 278 2227-2541 43-380 (386)
380 KOG2444 WD40 repeat protein [G 77.7 4.1 8.8E-05 48.9 6.0 28 2465-2492 113-140 (238)
381 PF12894 Apc4_WD40: Anaphase-p 77.2 5.1 0.00011 37.1 5.2 27 2222-2248 14-40 (47)
382 TIGR03075 PQQ_enz_alc_DH PQQ-d 76.1 3.2E+02 0.0069 37.6 28.4 66 2232-2306 121-194 (527)
383 COG3386 Gluconolactonase [Carb 75.0 2.5E+02 0.0055 36.0 21.5 210 2226-2493 31-251 (307)
384 COG3391 Uncharacterized conser 74.7 2.3E+02 0.005 37.2 21.4 159 2222-2402 118-282 (381)
385 KOG1897 Damage-specific DNA bi 72.4 4.7E+02 0.01 38.0 25.0 78 2219-2301 530-613 (1096)
386 PRK13616 lipoprotein LpqB; Pro 72.2 1.6E+02 0.0035 41.0 19.8 108 2272-2399 350-472 (591)
387 PHA02790 Kelch-like protein; P 68.9 1.2E+02 0.0027 40.9 17.5 63 2329-2401 317-382 (480)
388 PF00930 DPPIV_N: Dipeptidyl p 68.6 88 0.0019 40.4 15.6 103 2280-2402 1-130 (353)
389 KOG2079 Vacuolar assembly/sort 67.9 15 0.00032 52.0 8.5 71 2222-2301 133-203 (1206)
390 COG3386 Gluconolactonase [Carb 65.1 1.1E+02 0.0025 39.0 15.1 136 2223-2377 114-265 (307)
391 KOG4499 Ca2+-binding protein R 64.6 97 0.0021 37.9 13.1 99 2274-2377 160-264 (310)
392 PHA03098 kelch-like protein; P 63.7 1.6E+02 0.0035 40.1 17.3 25 2330-2354 342-368 (534)
393 PRK13616 lipoprotein LpqB; Pro 61.7 2.6E+02 0.0057 39.0 18.7 157 2223-2402 353-524 (591)
394 PF15390 DUF4613: Domain of un 61.6 1.2E+02 0.0026 41.4 14.4 121 2271-2402 56-185 (671)
395 KOG2395 Protein involved in va 61.1 92 0.002 41.8 13.1 144 2234-2403 349-500 (644)
396 smart00299 CLH Clathrin heavy 60.3 18 0.00039 40.0 6.3 60 1293-1361 57-121 (140)
397 PF14870 PSII_BNR: Photosynthe 59.3 3E+02 0.0066 35.2 17.3 149 2222-2400 147-301 (302)
398 PF14761 HPS3_N: Hermansky-Pud 57.6 9.7 0.00021 45.7 3.7 26 95-123 135-160 (215)
399 PF10168 Nup88: Nuclear pore c 53.1 1.8E+02 0.0038 41.5 15.0 83 2454-2544 84-181 (717)
400 PF02897 Peptidase_S9_N: Proly 52.7 6.7E+02 0.014 32.9 24.7 116 2273-2402 125-259 (414)
401 KOG4499 Ca2+-binding protein R 51.9 5.6E+02 0.012 31.8 19.4 34 2460-2493 217-250 (310)
402 PF14583 Pectate_lyase22: Olig 51.3 7.1E+02 0.015 33.1 18.8 93 2243-2353 170-273 (386)
403 KOG1916 Nuclear protein, conta 50.9 9.2 0.0002 52.8 2.3 152 2230-2403 194-374 (1283)
404 TIGR03075 PQQ_enz_alc_DH PQQ-d 50.7 8.6E+02 0.019 33.6 22.8 74 2231-2306 69-143 (527)
405 TIGR03118 PEPCTERM_chp_1 conse 50.6 6.2E+02 0.013 32.7 17.2 198 2326-2545 29-282 (336)
406 COG3204 Uncharacterized protei 50.3 6.6E+02 0.014 32.2 20.1 164 2222-2403 88-263 (316)
407 COG3204 Uncharacterized protei 49.3 6.9E+02 0.015 32.1 20.8 212 2271-2536 85-306 (316)
408 COG3490 Uncharacterized protei 48.0 2.2E+02 0.0049 35.9 12.8 55 2227-2290 121-180 (366)
409 PF10313 DUF2415: Uncharacteri 47.1 41 0.00089 30.9 5.0 31 2455-2485 1-34 (43)
410 PF05096 Glu_cyclase_2: Glutam 47.0 7E+02 0.015 31.5 19.0 198 2272-2530 45-249 (264)
411 PF12234 Rav1p_C: RAVE protein 47.0 1.9E+02 0.0041 40.4 13.5 110 2229-2352 39-156 (631)
412 PF11635 Med16: Mediator compl 45.1 1.2E+03 0.026 33.7 22.4 82 2453-2537 258-345 (753)
413 KOG1916 Nuclear protein, conta 42.2 79 0.0017 44.5 8.6 151 2241-2411 153-328 (1283)
414 PF10647 Gmad1: Lipoprotein Lp 40.3 7.8E+02 0.017 30.6 16.5 155 2273-2476 25-187 (253)
415 PF07569 Hira: TUP1-like enhan 40.3 99 0.0021 37.6 8.6 73 2462-2542 18-95 (219)
416 PF10313 DUF2415: Uncharacteri 39.7 69 0.0015 29.5 5.2 33 2367-2403 1-33 (43)
417 PF08728 CRT10: CRT10; InterP 36.8 6.1E+02 0.013 36.2 15.8 161 2231-2402 49-245 (717)
418 PF10168 Nup88: Nuclear pore c 36.0 1.6E+03 0.034 32.5 24.7 70 2327-2404 92-180 (717)
419 KOG2247 WD40 repeat-containing 35.8 7.5 0.00016 50.8 -1.8 146 2223-2399 38-184 (615)
420 TIGR02604 Piru_Ver_Nterm putat 35.5 6.7E+02 0.015 32.7 15.6 68 2222-2301 16-99 (367)
421 PF11715 Nup160: Nucleoporin N 33.3 1.9E+02 0.0041 39.7 10.7 77 2229-2306 156-253 (547)
422 TIGR02604 Piru_Ver_Nterm putat 32.7 1.2E+03 0.026 30.4 17.3 52 2326-2377 20-82 (367)
423 COG1770 PtrB Protease II [Amin 31.8 1.7E+03 0.037 31.6 22.5 121 2222-2358 131-262 (682)
424 TIGR03074 PQQ_membr_DH membran 31.7 1.9E+03 0.04 32.0 25.2 74 2231-2306 194-283 (764)
425 PF00780 CNH: CNH domain; Int 30.9 1.1E+03 0.023 29.0 20.2 149 2232-2414 106-263 (275)
426 PF07250 Glyoxal_oxid_N: Glyox 30.8 6.3E+02 0.014 31.6 13.3 34 2459-2494 174-207 (243)
427 PF11715 Nup160: Nucleoporin N 30.5 81 0.0018 43.2 6.4 39 2454-2492 214-256 (547)
428 PF14727 PHTB1_N: PTHB1 N-term 30.3 1.1E+03 0.023 31.9 16.1 111 2282-2402 36-162 (418)
429 KOG4460 Nuclear pore complex, 29.9 4.2E+02 0.0091 35.9 11.8 83 2455-2544 104-200 (741)
430 PLN00033 photosystem II stabil 29.7 1.3E+03 0.029 30.7 16.9 149 2223-2400 242-396 (398)
431 PF07569 Hira: TUP1-like enhan 29.5 1.9E+02 0.004 35.3 8.5 74 2228-2302 19-96 (219)
432 cd00870 PI3Ka_III Phosphoinosi 28.6 2.6E+02 0.0056 32.9 9.0 117 1275-1399 29-161 (166)
433 PF12110 Nup96: Nuclear protei 27.5 81 0.0017 39.9 5.2 49 1325-1377 2-50 (290)
434 PF14655 RAB3GAP2_N: Rab3 GTPa 26.2 2.8E+02 0.006 37.1 9.8 45 2450-2494 303-347 (415)
435 COG5276 Uncharacterized conser 25.7 1.5E+03 0.033 29.1 26.9 128 2231-2377 96-224 (370)
436 KOG3630 Nuclear pore complex, 25.7 6.4E+02 0.014 37.3 13.1 117 2273-2401 102-226 (1405)
437 TIGR03606 non_repeat_PQQ dehyd 25.0 9.1E+02 0.02 32.9 14.2 114 2222-2338 32-164 (454)
438 PF14655 RAB3GAP2_N: Rab3 GTPa 24.9 2.5E+02 0.0055 37.5 9.1 41 2222-2262 310-350 (415)
439 PF12931 Sec16_C: Sec23-bindin 24.4 1.2E+02 0.0026 38.4 5.8 74 1332-1410 5-84 (284)
440 TIGR03074 PQQ_membr_DH membran 24.2 1E+03 0.022 34.6 15.2 27 2385-2414 260-286 (764)
441 PRK10370 formate-dependent nit 24.0 4.8E+02 0.01 31.1 10.5 75 1335-1409 86-168 (198)
442 PF10647 Gmad1: Lipoprotein Lp 23.4 1.5E+03 0.032 28.1 18.0 117 2222-2348 68-192 (253)
443 KOG1900 Nuclear pore complex, 23.1 4.9E+02 0.011 38.9 11.7 35 2451-2485 239-273 (1311)
444 COG5167 VID27 Protein involved 23.1 1E+03 0.022 32.5 13.3 157 2225-2409 473-637 (776)
445 COG4590 ABC-type uncharacteriz 23.1 6.4E+02 0.014 33.7 11.5 155 2327-2545 228-389 (733)
446 KOG4460 Nuclear pore complex, 22.9 6.2E+02 0.013 34.5 11.5 85 2222-2306 106-203 (741)
447 PRK13684 Ycf48-like protein; P 22.6 1.8E+03 0.038 28.7 17.6 149 2222-2401 175-329 (334)
448 PF15390 DUF4613: Domain of un 22.2 2.8E+02 0.006 38.2 8.6 98 802-917 80-184 (671)
449 KOG1900 Nuclear pore complex, 21.7 6.9E+02 0.015 37.6 12.6 87 2454-2543 178-273 (1311)
450 KOG3630 Nuclear pore complex, 21.3 1.1E+03 0.024 35.1 14.1 119 2327-2492 108-235 (1405)
451 PF13934 ELYS: Nuclear pore co 20.8 6.5E+02 0.014 30.9 10.9 160 1241-1415 24-202 (226)
452 PF12768 Rax2: Cortical protei 20.2 5.9E+02 0.013 32.4 10.7 55 2240-2304 15-75 (281)
No 1
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=100.00 E-value=0 Score=3318.52 Aligned_cols=2126 Identities=25% Similarity=0.358 Sum_probs=1704.0
Q ss_pred CcCCCCCCCCCCccccccCCCCceEEEEeccceEEEEeCCCCCCcccccccccceeeeccCCC-CcceeEEeecCCCCcc
Q 000055 31 EFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDN-SLPVTSISWSPETPSI 109 (2548)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~ay~~~~~~vi~~~~s~~~~~~~~~~~~~~q~~~~~~~-~~~V~~v~~s~~~~~~ 109 (2548)
-++|.||-+-....+ .-.++|+||+|||+||+|||+. + +|||+ |+||++++ +++|+||+||+++
T Consensus 5 QvlpGa~n~g~~~y~-~gsi~~~pftay~sg~~vvIl~--n---~ferv------QiIp~~~~g~~~vsav~c~~~t--- 69 (2439)
T KOG1064|consen 5 QVLPGAPNAGDNCYS-VGSIGDLPFTAYASGCDVVILT--N---DFERV------QIIPGAKHGNILVSAVDCSQQT--- 69 (2439)
T ss_pred cccCCCCCCCCCCce-eceECCeeEEEeecCCceEEEc--C---CceeE------EeccccCcCceEEEEEeecccc---
Confidence 357788877666554 4578999999999999999999 7 99999 99999996 6999999999999
Q ss_pred cceeeecCCeEEEEecC-----CCCCCCceeEEEEEEEEecceEEEeeecCCCCeeEEecceEEeeccCC----------
Q 000055 110 GQLAAASENCIFVFAHD-----SASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKN---------- 174 (2548)
Q Consensus 110 G~iAa~~~n~v~if~~~-----~~~~~~~~~W~~~~~~~~~~~v~~l~W~~~G~~ll~~g~~~~lw~~~~---------- 174 (2548)
|+|||+|||.||||.|. +.+.+..|||+|++||++++.|.++.|+++|.|||+||+.+|||+++.
T Consensus 70 G~IA~sygn~v~I~eP~~i~s~k~n~~~~~~W~~t~qf~~~~~~~s~~w~~~~~rlltgs~~l~Lwq~~~~~~~~~~~~i 149 (2439)
T KOG1064|consen 70 GKIAASYGNVVSIFEPTNILSSKGNPHLAVQWVQTTQFFHDSTVVSLNWNFEGLRLLTGSDNLQLWQETINFSIEEPEEI 149 (2439)
T ss_pred ceeeeccCCeeeecCCcchhhhcCCcceeeeEEeeecccccccceeeeeccccchhhhcCcceEEEeccCCccccccccc
Confidence 99999999999999884 444556889999999999999999999999999999999999998663
Q ss_pred --------CcceEEEEecCCCCceeeeeeeccCCceeeeccccccccCCCCCCCceeeEeecCCcceeEEEEeecCCcce
Q 000055 175 --------TLWEIAWKFKENYPQNLVSATWSIEGPSATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVS 246 (2548)
Q Consensus 175 --------~~W~~~W~~~~~~~~~l~~~~~spdg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~HP~~V~ 246 (2548)
.+|||||+||++.|+++ |+|||||+||||+|+.++...-= . ...+-+..++.+|+|+||+|||||+
T Consensus 150 ~d~~l~~~~~We~iW~~k~~~~v~~--~~~SpDG~f~at~g~~dclaKvw-y---~~~~~~~~~~~~f~~vyL~HP~~Vs 223 (2439)
T KOG1064|consen 150 TDTVLPKRRDWELIWSCKTPSPVYS--STISPDGEFFATIGKRDCLAKVW-Y---KSTVSQSGGEESFSFVYLPHPRRVS 223 (2439)
T ss_pred ccccccccccceEEEeccCCcceeE--EEEcCCcceEEeccccCcchhhh-c---ccccccccCccceeeEeccCCcccc
Confidence 49999999999999888 99999999999999855221100 0 0112235689999999999999999
Q ss_pred eeecccCCcccCCCCCccccceeEeeeecCCeEEEEEeecCCccccccccc------CCCCccceeEEEEEEEecccccc
Q 000055 247 MVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDT------NDHKTIRRSFCVGAIIEINQALN 320 (2548)
Q Consensus 247 ~~~Wr~~~r~~s~~~~~~~v~nvLlT~c~D~~~RlW~E~~~~~~~k~~~~~------~~~~~~~~~f~~~a~i~~~~~~~ 320 (2548)
||+| ||++||||||+|||||||||+||+||||+||+.+|.++.++.. .-|.++.+|||+||.|| + .|
T Consensus 224 ~~~W----Rktskymp~gsv~nvL~T~C~D~v~RIW~et~~p~~~l~~~~~~~~~~~~~~~sa~~~f~~aadin--~-~t 296 (2439)
T KOG1064|consen 224 GFQW----RKTSKYMPRGSVSNVLMTCCLDNVCRIWCETDLPKDCLVMLTGFDHKMKSFHVSALCHFHIAADIN--P-AT 296 (2439)
T ss_pred ccee----ccccccCCccchhhhHHhhhccCceEEEEEeccCCCeEeeeccccccccccccCCCcceEEEeecC--c-cc
Confidence 9999 8999999999999999999999999999999999998865554 23667899999999999 7 77
Q ss_pred CCCCCCeEEEeecccceEE--eccCCccceeccccccCCceeeeeeEEeecCCccceeeeeeecccCCCCccCeEEEeee
Q 000055 321 GALGMDIVITWAKEIRCMF--ETGEGANHFISTGVYEHGGTGKCEWLVGYGPGSLVTLWAIHCLDDISPLRFPRVTLWKK 398 (2548)
Q Consensus 321 ~~l~~~~~v~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ew~~~~~pg~~~~~w~v~~ldd~~~~r~~~v~~~~~ 398 (2548)
| +|+| |+||||+|| -+-|...+.+++.+++...++.|||+.|..||..++.|||||||||+||||||||||+|
T Consensus 297 D----~F~v-Wlnnke~~F~~~t~e~se~~~s~d~~~e~~vg~~~r~~G~ss~~~l~~W~V~~LDd~~pfRq~~vS~~sr 371 (2439)
T KOG1064|consen 297 D----PFVV-WLNNKELHFLTLTHENSEQDFSMDDEDEEIVGDGERLGGLSSGNPLNNWHVEWLDDYSPFRQPQVSFSSR 371 (2439)
T ss_pred C----ceeE-EEecccceeEEEeecCcccccccccccccccccccccccccCCCcccchhhhhccccCccccceeeeccc
Confidence 7 7888 999999999 44444455678888888889999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCcCCcccceeEEeeccc-----------CCCCcccccccccccCceeeeeccccCCCCccccccC
Q 000055 399 QNLELEHPHNSGFSGFQGQSLLNKVVISRDCV-----------SGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSD 467 (2548)
Q Consensus 399 ~~~~~~~~~~~~f~~~~d~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~n~~~~~~~~~~~s~~~~~~s~~ 467 (2548)
+|. +||+ +|+.+|++.++|..+. .-+..+|+++.... |+++|+++|.||++| +++|+
T Consensus 372 ip~--------a~p~-~da~SLss~~~~~~~~~~~k~aiq~~~~~~~s~~ss~~Hs~-~tv~~is~H~ngsln--~~~fs 439 (2439)
T KOG1064|consen 372 IPS--------AFPT-GDAMSLSSATMLNDCTPLYKDAIQPDNLYPGSILSSSYHSK-PTVMMISKHTNGSLN--SVSFS 439 (2439)
T ss_pred ccc--------cccc-cchhhhhhhhcccCCcccchhhhccCCcCCCccccccccCC-CceEEEEeecccccc--ceecc
Confidence 999 9999 9999999999995322 22224788888877 999999999999999 89999
Q ss_pred CCC-CceeeeecccceeeeccccccEeEEEeeccccchhhhhcc-CCC------ccEEEEEecccccccCCCCCCCCccc
Q 000055 468 KSS-TGQILSCSASRILSIEGHTGKILQVAVHPCVSEFELAVSL-DSN------GLLLFWSLSTISNCISDLPTLMPSWK 539 (2548)
Q Consensus 468 ~~~-~~~~~~~~~~~~~~~~gh~~~i~~v~~hp~~~~~~l~~s~-d~~------~~li~w~~~~~~~~~~~~~~~~p~~~ 539 (2548)
+.+ |++++++ +|++|+|||||+|+||++||++ |++||||+ +++ +|||+|+|+|| || +|
T Consensus 440 ~~ssft~vls~--~h~~r~~GHrf~i~~la~hsvl-pllltTS~~~~~~~~~i~Se~ilwrv~~v----------gP-ls 505 (2439)
T KOG1064|consen 440 LKSSFTTVLSI--GHVSRFCGHRFHINDLACHSVL-PLLLTTSHHNSNDPIAICSELILWRVDPV----------GP-LS 505 (2439)
T ss_pred cccchhheeee--eeEEEeecCCcchhhhccCCCc-cceeeecccccCCccceeeeeeEeeccCC----------cc-ee
Confidence 988 9999999 9999999999999999999999 88888887 434 89999999999 99 99
Q ss_pred cccC---ccccccc--CCcceeeeeccccccceEEEEeecCCeeEEEEeccccCCCCeEEeeeEEEeccCCCCCCCCCce
Q 000055 540 LCGK---LRTRKSC--SNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTGHGHYEDGPAN 614 (2548)
Q Consensus 540 ~~g~---l~~~~~~--~~~t~~~w~p~~l~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~c~i~~~~~~~~~~~~~~ 614 (2548)
+.|| ++|+++. ++|++|+|+|++||++|...+ |.|+.+||++.-++... +--+..|.|||+....... .+
T Consensus 506 ~~ggVselar~Ns~~~s~fs~v~w~ptllps~~lg~~-~ns~sacFvA~dg~~~r--~yqavida~~ll~e~s~~e--~S 580 (2439)
T KOG1064|consen 506 FNGGVSELARINSLHISAFSNVAWLPTLLPSYCLGTY-CNSPSACFVASDGGNLR--KYQAVIDAIPLLVELSLPE--TS 580 (2439)
T ss_pred eccCcchhhhccchhhhhhceeeecccccccceeeee-ccCCcceeEEecCCcch--hhhhhhhcchhhhcCCchh--Hh
Confidence 9999 9999998 999999999999999998777 88888888888876655 6778899999987633222 78
Q ss_pred eeeecCCcccCcccccceEEEEEEeccccceeEEEEEEeeecCCccccCCC-CCCCccccccCCcccccccceeeeeec-
Q 000055 615 IFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSESCCGCI-DDNNTVKCSMCKFETTFCGKKYFIGVN- 692 (2548)
Q Consensus 615 ~~~~~~~~~~~~~f~~~~f~~v~~~~~~~~~l~w~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~- 692 (2548)
+++-|.-.+|+++|+-+++.++-+|+.+|....|+.+||.|+....+|+|+ .+.+......+-|+..|.++.++..++
T Consensus 581 ~~i~~~~n~vsqqsta~Pgcil~l~~i~~~~~~ns~~lhvFq~~~i~~~~~~~~~~~~~~~~~~Fee~F~~v~ie~~~d~ 660 (2439)
T KOG1064|consen 581 KFIGEVFNIVSQQSTARPGCILELDPIEKHNGSNSQLLHVFQEGFITADEHFMDSDSGGSPNPLFEEKFYGVIIEKKIDS 660 (2439)
T ss_pred hHhhhhhccccccccCCCcEEEeccccccccccchhhhhhhccCceeecccccccccccCCCccccccceeeeeeeeccc
Confidence 888899999999999999999999999999999999999999999999999 777777777788999999998888887
Q ss_pred ---cccCcCCCCCCccCccEEEEeecCCCcCCCccccCCCCCCCCCCCeEEEEeecCCcEEEEEEEeCCCCCCceeeeEe
Q 000055 693 ---PCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELV 769 (2548)
Q Consensus 693 ---~~s~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pY~~at~csDg~vRfWkc~v~~~~~~~~~W~~w 769 (2548)
+|+|++| +||+| +++++.|++ |||++++.||+ +||+|||+|+||+||||||++.++++.... ||
T Consensus 661 ls~v~~q~l~---lpE~v-~i~~~~Psa-----ghlSssS~ypa--apYli~t~~sDg~vRfWrc~~~~d~~~~~s--~W 727 (2439)
T KOG1064|consen 661 LSSVYTQELD---LPEGV-DIIVISPSA-----GHLSSSSNYPA--APYLIATICSDGLVRFWRCRVQGDDTAPNS--EW 727 (2439)
T ss_pred cceeccCCCC---cccce-eEEEecCcc-----ccccccccCcC--cceEEEEeccCCceeeeeeeeccCCCCccc--hh
Confidence 7888885 99999 899999999 99999999999 999999999999999999999876544333 78
Q ss_pred eeeecCCCCceEEEeecCCCeEEEEecccC-CCCcceEEEEEeecccccce-EEEeeEeeccC-----------ceEEee
Q 000055 770 GMLVAHQGPVSAISLTDGGRKIATVSAASH-SNAVSNVRIWESVCVTELGS-FVLEDTLSFDT-----------NIVAVN 836 (2548)
Q Consensus 770 ~~~~~~~g~~~~is~s~~gr~a~~~~~~~~-~~~~s~lsIwd~~~~s~ggs-~vlE~~~~~~~-----------~iv~LD 836 (2548)
+|+.+ +|+|+|+||+||+|+++++ ++...+|+|++ |+++||+ |++|++|+.+. +|||||
T Consensus 728 ~l~~~------~Is~a~tgr~A~ay~~~~s~s~~~~~vai~e--ces~ggS~W~le~ti~~~~~~~e~~~~n~~~lv~LD 799 (2439)
T KOG1064|consen 728 PLVSE------EISCAQTGRLACAYKKGSSTSIFALKVAIFE--CESRGGSIWVLEQTIHSDEEHLESIFHNDKHLVDLD 799 (2439)
T ss_pred HHHHh------hhhhcccCceeEEEecCCCcchheeEEEEEE--ecCccceEEEeehhhhhhhhhhhhhccccccceeee
Confidence 88887 8999999999999999987 66778999999 7888888 99999999853 899999
Q ss_pred eeecCCCcEEEEEeecceEEEEEecccCcccccccc--------------cccccccceeecc----CCCCC-ccccccc
Q 000055 837 WLTLENGQSLLGVCLQNELKVYAQRHYGGQILLDTK--------------NSLKMQNWFCLAF----SPTFA-AHDFTWG 897 (2548)
Q Consensus 837 W~s~edg~~ILtVG~~~~v~lytqlr~d~~~~~~~~--------------~~~~~~~w~~i~~----~~t~~-i~dlsW~ 897 (2548)
||||||||||||||||++|+||+|+|++|++..... ...-.+.|+++|. ++++| +.|++|+
T Consensus 800 W~Stedg~hILtVg~g~~v~lY~qlr~~~~~~t~~~~~~~s~~~P~~~~~~~~~~~~W~~lR~idl~~gtp~lp~~~sWv 879 (2439)
T KOG1064|consen 800 WTSTEDGQHILTVGFGSKVLLYGQLRQDYTNQTFAAMSSESQIRPLFRSTKSLSASSWVLLRSIDLLSGTPPLPVDLSWV 879 (2439)
T ss_pred eeecCCCcEEEEEeccceEEEEeecccchhhhhhhhhcchhhcccchhhhccccccceeeeeEEeeecCCCCCcccccce
Confidence 999999999999999999999999999999865221 1112237877763 48888 8999999
Q ss_pred cceeEEEEecceeeeeeccchhhccccccccCCCccccccccccCCcCCCceeeeeccccCcCccCCCCCcccCCCcccc
Q 000055 898 RRAIAIVVHQSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIFTVCDSESSAGDQRGDYESAPSVNI 977 (2548)
Q Consensus 898 rdGiLVVGm~nem~vySQW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 977 (2548)
||||||||||||||||+||++... | ..+........+.+..+. .+ ++.+.-.....+. ....
T Consensus 880 rdGilVv~md~em~vy~qw~~~~~---~---~~D~~l~s~~~d~s~~~~--------~~---~~~~~~~~~~S~~-~~~~ 941 (2439)
T KOG1064|consen 880 RDGILVVAMDNEMHVYNQWKPSLV---Q---GRDSSLLSTTNDISLLDS--------TS---TSSGCLPSKKSRV-LGDT 941 (2439)
T ss_pred ecceEEEeecCcceehhccccccc---c---ccCcccccCccchHHHHh--------hc---cccccccCccccc-cccc
Confidence 999999999999999999997211 1 001100000000000000 00 0000000011110 0011
Q ss_pred cccccccccccccccCCcc-ccccCHHHHHHHHcCCCCCCchHHHHHHHHcCCchhHHHHHHHHHHhcCCCCCCccc---
Q 000055 978 DMKNDHLVASDQLKCGGAI-LGSWSMLEIAEKLRGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKR--- 1053 (2548)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~-~~~~~lfe~~~~lngpLP~YHPq~L~q~l~~Gk~~~Vk~il~~l~~~l~~~~~~~~~--- 1053 (2548)
.+.+...++.. .+.+.. +.+.++||++++|+|+|||||||||+|+|++||++|||+||.||++||+....-...
T Consensus 942 s~~~~~~~~~a--~~~~t~~~~~~glfe~a~vl~g~LPqYHP~qLl~ll~~gk~rrakAIL~hL~~cl~~~~~~~~~~~~ 1019 (2439)
T KOG1064|consen 942 SVANMSCIGTA--YGSPTVDIDDMGLFEAAHVLSGILPQYHPQQLLELLDAGKVRRAKAILLHLVLCLKGSVTVHKDLAS 1019 (2439)
T ss_pred chhhccccccc--cCCcccccccccHHHHHHhhCCCCcccCHHHHHHHHHcCcHHHHHHHHHHHHHHhcccccccccccc
Confidence 11122222111 133444 588999999999999999999999999999999999999999999999872211111
Q ss_pred -------------ccccCCCCCCcccchhhhhcccccCCCCCCCcccCCCCcccchhhhhhccccccccCCCCCCCchhh
Q 000055 1054 -------------YCYTKSSHIVPQILLSTYFEGLLSKGSTDNGFQWSGLNTFSTSLQFRQFAYNMDLDASNSSSSTKSE 1120 (2548)
Q Consensus 1054 -------------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1120 (2548)
-+++++++++|.+++....+|.++.....++ ...|.+.|+. ....+ -..+++++
T Consensus 1020 ~st~~~~~d~~~~~~~~ei~SipplPl~~l~~ad~Ds~~~s~e~-------s~gyd~lF~~-----~~~~~-~~~e~d~~ 1086 (2439)
T KOG1064|consen 1020 DSTSVLCQDELISKDTTEIDSLPPLPLYALLAADRDSPYQSVEK-------SSGYDELFND-----ELSKT-ILLETDEE 1086 (2439)
T ss_pred ccccccchhhhccccchhhccCCCCcHHHhhccccCCcceeccc-------ccccchhhhc-----ccccc-ccccchhh
Confidence 1224778888888777766665432211111 1113445521 11111 12455666
Q ss_pred HHHHHHHhhccccCcCCCHHHHHHHHHHHHHHHHhhcccccccccccCccccchhhhhHHHHHHHhhhcCcccccccccc
Q 000055 1121 LSGFVELLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRFGKLVSAEELAV 1200 (2548)
Q Consensus 1121 ~~~l~e~L~~~~~Lp~Lt~~eQ~~L~al~d~v~~~~~~~~~~~~~~lD~~g~Rfll~~~~~~~~~~~~~~~~~~~~~~~l 1200 (2548)
.+.+++.|-++.+||||||+|||+|+||||||+++...++. ++|||||+|||++||+++++..+..++.++.+..+|
T Consensus 1087 ~s~FLt~lLths~lpgLSR~eQm~LlAlaDtv~~~st~~~~---~tLDecGlRfllamr~~~~ll~~lp~~raql~~~gl 1163 (2439)
T KOG1064|consen 1087 FSYFLTELLTHSSLPGLSRLEQMHLLALADTVAETSTDHSE---ETLDECGLRFLLALRLHTLLLTSLPGYRAQLLHQGL 1163 (2439)
T ss_pred hhHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHhcccccc---ccccccchhHHHHHHHHHHHHhhchhhhhhhhhcCC
Confidence 66766666666799999999999999999999999877443 679999999999999997655544444556666799
Q ss_pred cccccchhhcccCHHHHHhc---cCCCCCChHHHHHcccEEEEeChHHHHHHHHHHHHHHHhccCCcchhHHHHHHhcch
Q 000055 1201 DSRLIAWAFHSECQETLFGS---ILPNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRI 1277 (2548)
Q Consensus 1201 ~~~~i~WA~hS~~qe~Ll~~---~~~~~~~W~~~r~~gv~~W~~~~~~lr~~~e~iA~~~~~~~~dp~~~al~Y~al~Kk 1277 (2548)
++++|+||||||+||+||+. +.+++++|++||++|||||++|..+||++||||||++|+++|||+||||||||||||
T Consensus 1164 ~ts~iaWAFHSe~eEeLlNl~psl~r~~~sW~elR~~gig~WlkN~~~Lr~ciEKlAK~af~kn~dP~DaALfYLALkKk 1243 (2439)
T KOG1064|consen 1164 STSHIAWAFHSENEEELLNLLPSLHRGDPSWNELREYGIGWWLKNEQTLRKCIEKLAKAAFQKKRDPLDAALFYLALKKK 1243 (2439)
T ss_pred chhheeeecccccHHHHHhhcccccCCCccHHHHHhhCchhhhccHHHHHHHHHHHHHHHHHhcCChhhhhHHHHHHHHH
Confidence 99999999999999999985 467899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCchhHHHHhhccCChHHHHHHHHhhHHHHhhcchhHHHHHHHHhcCChhHHHHHHHHHcCChhHHhh
Q 000055 1278 QVLAGLFKISKDEKDKPLVGFLSRNFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALV 1357 (2548)
Q Consensus 1278 ~vl~~L~k~~~~~~~~~~~~Fl~ndF~~~rwr~aA~KNAy~Ll~k~ry~~AaaFFLLag~~~dav~V~~~~l~D~qLA~~ 1357 (2548)
+||+||||++++|++++|++||+|||++||||+||+||||+||||||||+|||||||||+++|||+||++||+|+||||+
T Consensus 1244 ~Vl~gLfr~~~~hed~kmv~FfsnnF~eerWrkAAlKNAFvLLgKhRfe~AaaFFLLagslkDAI~VC~kkl~DiQLALv 1323 (2439)
T KOG1064|consen 1244 QVLWGLFRLAKDHEDTKMVVFFSNNFTEERWRKAALKNAFVLLGKHRFEHAAAFFLLAGSLKDAINVCCKKLNDIQLALV 1323 (2439)
T ss_pred HHHHHHHHHhhccccchHHHHhhccccHHHHHHHHHhhHHHHhhhHHHHHHHHHHhhcchHHHHHHHHHHhhhhhhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCChhhHHhHhhhccccccccCChhHHHHHHHHhCChhHHHHHHhcCCcccccccccccCCCccCCCchHHHH
Q 000055 1358 ICRLVEKHGGPLERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFALSSNSVAFMDPSIGLY 1437 (2548)
Q Consensus 1358 i~Rl~e~~~g~~~~~ll~~~vlp~~~~~~d~wl~s~~~w~l~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~f~DP~l~~y 1437 (2548)
||||||||+||++++||+++|||.+.+.+|+||+||+||+||+|.+|++||++..+.+....-...+++.+| .+|
T Consensus 1324 I~RlYEgd~g~~~~~LL~~~vLp~~v~~~DpwLrSmayWiLkdy~rAl~tLl~~~~~end~~~~s~~~~~Vf-----~ny 1398 (2439)
T KOG1064|consen 1324 ICRLYEGDGGPTYKELLNKYVLPIAVQHNDPWLRSMAYWILKDYTRALLTLLGQLPRENDALYTSASNPEVF-----NNY 1398 (2439)
T ss_pred eeeeecCCCchHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhcccCcchh-----hch
Confidence 999999999999999999999999999999999999999999999999999987332211110112334444 466
Q ss_pred HHHhhchhhhhHh------------hh----ccchhhhHHHHHHHHHHHHHhcCCChhhhhhcccCCCCCCCCCcccccc
Q 000055 1438 CLMLANKNSMRNA------------IG----EKNAAILGRWAALMRATALNRCGLPLEALDCLSSSPSTIGGTDQESVLN 1501 (2548)
Q Consensus 1438 ~~~l~~~~~~r~~------------~~----~~~~~~~~~~~~~~~a~~~~r~Gc~~LAL~~l~~~~~~~~~~~~~~~~~ 1501 (2548)
.+++++++.+|+. .| ++.++.+|||+||++|++|+|||||+||||||+++|+++.++.+.++..
T Consensus 1399 ~ylr~hplllr~~~~~~~~~~~~~~L~~~~~e~~~~~iErrl~l~tA~ah~r~GCpllALevLs~~p~~~~~s~d~s~~~ 1478 (2439)
T KOG1064|consen 1399 SYLRTHPLLLRRNLASAEKFSLKYALGGRSLEDIINLIERRLFLTTANAHCRCGCPLLALEVLSKWPKVIKGSKDTSEAS 1478 (2439)
T ss_pred hhhccCcHHHhhhhccccchhHHHHhhccchhhcccchheeeeeehhhHHHhcCCcHHHHHhhhcccccccCCcccchhh
Confidence 6666666665544 33 4458899999999999999999999999999999999998888777655
Q ss_pred CCCCcccccccCC---CCCCCCCcchhHHHHHHHHHhhccchhhHHhhhhccCCCCCCCCC---CCC------CC-CCCc
Q 000055 1502 IGHSHILPEILKP---SAATGSSNWLLRDVALHLESCAKLDLSLQYFSKLIRDHPSWPDLG---FGR------AS-KCFM 1568 (2548)
Q Consensus 1502 ~~~~~~~~~~~~~---~~~~~~~~Wl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~-~~~~ 1568 (2548)
+...+..++.-.| .....+.+|....|..-.....-...+++..++.-+| ...+... ..+ .+ ..+.
T Consensus 1479 ~~~~~d~q~~a~~~~~~~t~~s~dw~~p~vs~~~d~~~~~w~~e~~ee~~~~e-~~~~~~~~p~~~~~k~~~~~s~~~t~ 1557 (2439)
T KOG1064|consen 1479 KLQLDDRQSGASGEADSSTPISFDWSQPSVSDQDDSLELDWDEEQNEEEIDRE-ADEPLLNPPVRQCDKFLRQKSKNDTE 1557 (2439)
T ss_pred ccccccccccccCCCccCCcccccccCCcccCCCCCcccCccccccchhhccc-ccccccCCcccccchhhhhhhcCChH
Confidence 5443333331111 1112345788655544333322222222222221111 1111110 000 01 1133
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHhhhcccccChhHHHHHHHHHHhcCC--------------------------------
Q 000055 1569 DFEIHQYEKLVQNFQQKLYTALAFFEQRFSMDSSSLIAKILSLLCNNG-------------------------------- 1616 (2548)
Q Consensus 1569 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~l~~~~~~~l~n~~-------------------------------- 1616 (2548)
| +++|+.||++|+ |++|+||+|+++||++|||+||+++++|++.|+
T Consensus 1558 d-i~aq~~kfvA~l-~ilm~eLsTlatG~e~dGg~lr~ql~nwlerev~al~~~cd~~s~ak~~~~~~~~~~s~~~~~~~ 1635 (2439)
T KOG1064|consen 1558 D-IFAQQLKFVACL-KILMEELSTLATGYESDGGKLRYQLYNWLEREVKALKDTCDYCSSAKSKSSKSGDEKSLLLDREA 1635 (2439)
T ss_pred H-HHHHHHHHHHHH-HHHHHHHhcccccccccchhHHHHhhhhhhhhHHHHHhHHhhhhhhhcccccccchhhhhhcccc
Confidence 3 799999999999 799999999999999999999999998887653
Q ss_pred ------------------------------ch--hhhhhhhcCcccCC-------------cccccccccccCCcccccc
Q 000055 1617 ------------------------------LL--FIGYDLLHGYICQG-------------KSQEKSSDTVDGLSLYFCQ 1651 (2548)
Q Consensus 1617 ------------------------------ll--~~~y~~l~g~~~~~-------------~sqq~~~~~~~~~~l~~~~ 1651 (2548)
|| |++||+|||++++| |+|||++..++.++++.++
T Consensus 1636 a~~~ph~~~~~~~~~~~~~~r~~Wl~a~q~llr~~ls~cslh~a~~~~lasv~mEll~ll~~~q~e~~~~~l~~~l~~~~ 1715 (2439)
T KOG1064|consen 1636 ACDVPHQIKCFRLQRESAGKRKKWLKANQFLLRGFLSYCSLHGASGGGLASVRMELLLLLQEVQQETTEYQLSSPLPWPT 1715 (2439)
T ss_pred cccCCchhhhhhhchhhcccchHHHHHHHHHHHHHHHHHhhccccCCcchhhhHHHHHHHHHHHHHhHHHHHhcccCCCc
Confidence 24 99999999999999 8999999999999999999
Q ss_pred chhhHHHh-------------------------------------hhhhHHHHHHHHHHhhhcccccccCcccceecccc
Q 000055 1652 HKPLLKAA-------------------------------------EDISIFLSRFIAATSITCSHLKSTNSENVRHHEVR 1694 (2548)
Q Consensus 1652 ~~pll~a~-------------------------------------~~~~~~l~~~ls~c~~~c~~~~l~~~~~~s~~~~~ 1694 (2548)
+.|||.|| .++++++++.|++.+++||||++|++++|
T Consensus 1716 t~plL~a~va~~k~~vanp~~~le~~~~dil~~i~q~~~~p~p~~~~~~v~~l~sl~~~~s~~iY~~l~~~~~~------ 1789 (2439)
T KOG1064|consen 1716 TVPLLFACVAPLKTVVANPLLYLENQTHDILRAIIQEASVPHPDASDVKVYVLHSLAVSLSACIYQSLCDSESY------ 1789 (2439)
T ss_pred chhHHHHhhcCceEEEecCceehhhhHHHHHHHHHhccCCCCCChhhcceeeehhhHhhhcceeeeeecccccc------
Confidence 99999998 56689999999999999999999997776
Q ss_pred ccccCCCcccchhhHHHHhhhhhccccccCCccccccccCcccchHHHHHHHHHHHhhhcchhhHHHhhhhhhhhccCcc
Q 000055 1695 SRWSNAQGYYFQSIIFSLWSLRAAMRTFSGSFPEELITPLFLLDLYEYYVHFASAWLQRDSKGLLQVLQPVLITYTNGHT 1774 (2548)
Q Consensus 1695 ~~~~~~~~~~~~~~~~sl~~~~~~~r~~~~~~~~d~~~~p~~~~~~~~~~~ll~s~~~~ds~~L~~~L~~~~~a~~~~~~ 1774 (2548)
++...+.++|+++.++.+.+.++|++|||++.++++|.+++++|+|.|+++|||.|+|||++++
T Consensus 1790 ----------------~ll~~r~~~~~~s~~~~~t~~~~p~~wpgvs~l~~ll~~~~~~d~~~l~vll~E~~~av~~slf 1853 (2439)
T KOG1064|consen 1790 ----------------CLLTQRPRLRTGSKDELVTPNTSPAQWPGVSGLIALLDSEKEEDQSKLNVLLCESFVAVYLSLF 1853 (2439)
T ss_pred ----------------ccccCCCccccccccccccccCCcccccchHHHHHHhhhccccccCcceEeehHHHHHHHHHHH
Confidence 2556668899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHhhccccCCCcccccccCccceeeccccccccCCCCCCCcchhhhhccchhhhhhhhhhhccccccc
Q 000055 1775 PYEVDMNNLKTFFHQSAELLTRNTSIDNMVGDLQVSKFVDDERSTDLMNSIPEDERWQIMGACLWQHMSRFMKHKLNSMS 1854 (2548)
Q Consensus 1775 ~~~~~~~~~~~~~~~~~~~l~~~t~~~~~G~~~~~s~l~~~~~~~~~~~~~~~~e~~~~~~~sl~~~~s~~l~~~~rl~~ 1854 (2548)
+|++++++++++||+++|++++.||...||||.+ |..+++.+.+...+|..- .... -+.-+ .+.+
T Consensus 1854 i~~Lat~sS~~l~rl~~~~~n~~~~~~~fggg~~---l~~k~~a~~~~~~ap~~~-e~t~--------~n~~~---~~t~ 1918 (2439)
T KOG1064|consen 1854 IHALATLSSRELFRLVAHPLNNLMWSLVFGGGLK---LECKPQAQSLNRDAPSLS-EETK--------ENESK---VSTP 1918 (2439)
T ss_pred HHHHHhccHHHHHHHhccccChhheeeeecCcee---eeecCcccCCCCCCCccc-cccc--------ccCCC---CCCC
Confidence 9999999999999999999999999999999985 444455555444444221 0000 01122 3445
Q ss_pred cccccc---cccceecCccccccccccCCC-----Cccc-------------------CCccchhhHHHHHHHHHHHHHH
Q 000055 1855 VKLDEN---HSSRLLGGHISSWTSSLTNPE-----SASI-------------------GLKEQMRLLTLFLAQLLKSALL 1907 (2548)
Q Consensus 1855 ~~l~~~---~~~~~~~g~~s~~~~~~~~p~-----s~~~-------------------~~~~~~~l~~~~l~~~~~~~l~ 1907 (2548)
.++..+ ++|+|+||+.+||+||.+||. +++. .+.||-.-. .+--+++|+||+
T Consensus 1919 ~~~~~~~~~~~ekfippe~~i~~~f~~KP~~~~~D~d~s~~sdne~~~~~~D~~~s~~~l~e~~~~~-s~sw~ll~la~~ 1997 (2439)
T KOG1064|consen 1919 SKVSVDSPALHEKFIPPELSIWDYFKAKPSEDWYDSDESVESDNEDYVDDDDVRSSDEQLSEHNNPN-SYSWSLLRLAMV 1997 (2439)
T ss_pred CCCCCCchhhhhhcCCccccHHHHHhcCcccccccchhhhcccchhccccccccccHHHHHhhcCCc-cccHHHHHHHHH
Confidence 566666 999999999999999999991 1100 122221100 112267999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCChhhhhhhhcCCCcch---hhhhhccccccCCcCCCc-chhhhHHHhhhccCCCcc
Q 000055 1908 HISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGT---LYQHLNQIVVSMNIINNK-DEAAISELLWDVCSDPSI 1983 (2548)
Q Consensus 1908 ~~~~~~lk~~~~fl~~~~~~~~~~p~~~w~~~~~~~~~~~---~~~~~~~~~~~~t~~~~~-~~~~~~~~lw~~~~~p~~ 1983 (2548)
+++++++| +|++.+|++. ++=-.|||+.++.+.+.. |.+|+.+++|+||||+++ +++.+++|||+|+|+++.
T Consensus 1998 ~~~~hn~k---~~~~~aG~~~-spl~~n~i~~~~a~~~~~g~ai~~~~~l~~~~ntpf~s~~s~a~~~~rlW~~lv~q~~ 2073 (2439)
T KOG1064|consen 1998 QLALHNVK---EFHKRAGEDI-SPLCRNYINHRQAELSSNGPAILRNKALLEPSNTPFKSIDSSADSVKRLWAYLVKQEV 2073 (2439)
T ss_pred HHHhhhhH---hhhhhhcccc-cccccccccccchhhhcCCcceeehHhhcCccCCcccccccccccHHHHHHHHhcccc
Confidence 99999999 9999999994 332369999987776633 999999999999999998 899999999999999999
Q ss_pred chhhhhccccCcccccccccCCccccccccccccccccccccCccccCccccCCCcccccccccccCCCCCCcccccccc
Q 000055 1984 IHEGFTQEKLNWRSYINCKLSKGWSHINEGVKLKHEIKKTCKNEDKLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANM 2063 (2548)
Q Consensus 1984 ~~~~fi~e~~n~~~~~~~~~~r~w~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2063 (2548)
+||+||+++|.+.. +.++++|+++
T Consensus 2074 ~qevfik~if~k~~-------------------------------~~e~~lG~~g------------------------- 2097 (2439)
T KOG1064|consen 2074 LQEVFIKYIFTKKK-------------------------------EIEADLGYSG------------------------- 2097 (2439)
T ss_pred cceeeeeehhccCC-------------------------------ccccccCcCC-------------------------
Confidence 99999999998831 1345777775
Q ss_pred ccccccCCCCceEEeccCceeEEEEeccCCCCcEEEeecCCceEE-----------eeccCccccc--------c-cchh
Q 000055 2064 ANEVIPFQAPKEICKRNGELFEALCVNSIDQRQGAIASNRKGIVF-----------FNLEDEIPLH--------D-QLKY 2123 (2548)
Q Consensus 2064 ~~~~~~f~~~~~ii~~~~~~I~a~~iN~~n~~~lalAs~rk~~~~-----------~~l~~~~~~~--------~-~~~~ 2123 (2548)
.+.||+ ++.|.|.||++|+.+++.+|+|++++-+-| .|..++.... . +..+
T Consensus 2098 --------~~~~ii-ke~e~ivaf~~n~~s~~~ia~an~~~~qe~dvs~~~~~q~~~w~~ne~d~~~~~~d~~~~~s~~~ 2168 (2439)
T KOG1064|consen 2098 --------GKARII-KESEEIVAFPVNKESVNTIAFANHHDVQEFDVSSSLAHQYYWWFGNERDTETKGVDPDANHSPPD 2168 (2439)
T ss_pred --------CceeEe-ecccceeccCcCcCCcceEEecCCCcchheeccchhhhhhhhhhcchhhhhhcCCCcccccCchh
Confidence 458899 999999999999999999999999965521 1222221000 0 0001
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccCCCCCC-CCCCCccccccCccccccCCCCCCCcccCCccccCCCCccCCccccccc
Q 000055 2124 IWADADWPQNGWAGSESTPVPTFVSPGVGL-GSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWE 2202 (2548)
Q Consensus 2124 lw~~ad~p~n~w~~~~Stp~~ts~SP~vg~-~S~rGs~l~lggasiG~~ssa~p~~~l~G~~s~gi~G~~g~gaS~i~W~ 2202 (2548)
+.+ .++..|+.+.+-+++..|+.+. ++++|+.+++
T Consensus 2169 ~l~-----~~~~~~~~s~~~~~~n~~~~~~tq~~~~~~~~~--------------------------------------- 2204 (2439)
T KOG1064|consen 2169 ALA-----SQSTVGSFSNRFTPSNLPWLGSTQTSRGASVMI--------------------------------------- 2204 (2439)
T ss_pred hcc-----cccccccccccCCcccCCccccceecccceeEe---------------------------------------
Confidence 100 0111133333333344444443 3444444443
Q ss_pred cccCCccccCCCCccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC
Q 000055 2203 TQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY 2282 (2548)
Q Consensus 2203 ~~ed~e~~v~p~~tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd 2282 (2548)
++.++++ +++.-||..++.+||++||.|++|.+..++.+.+++.. +. ..|+.+.|+.+
T Consensus 2205 -----------k~~v~~v--~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~--------g~-s~vtr~~f~~q 2262 (2439)
T KOG1064|consen 2205 -----------KHPVENV--RRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA--------GN-SRVTRSRFNHQ 2262 (2439)
T ss_pred -----------ecccCce--eeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc--------Cc-chhhhhhhccc
Confidence 4455665 99999999999999999999999999999999998642 22 78999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee
Q 000055 2283 GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI 2362 (2548)
Q Consensus 2283 G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl 2362 (2548)
|+.+..+..||.+.+|++. .+++...+|+.....++.++. ..++++|.+++++++.+||...++......
T Consensus 2263 Gnk~~i~d~dg~l~l~q~~------pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~- 2332 (2439)
T KOG1064|consen 2263 GNKFGIVDGDGDLSLWQAS------PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH- 2332 (2439)
T ss_pred CCceeeeccCCceeecccC------CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-
Confidence 9999999999999999987 245555566665556666554 789999988899999999998754444323
Q ss_pred eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCC
Q 000055 2363 TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQ 2442 (2548)
Q Consensus 2363 ~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~ 2442 (2548)
.+|.++++++++.|. .++|++||.+|.|++||+|+ +.+++.
T Consensus 2333 ~~H~~gaT~l~~~P~-------~qllisggr~G~v~l~D~rq----rql~h~---------------------------- 2373 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPK-------HQLLISGGRKGEVCLFDIRQ----RQLRHT---------------------------- 2373 (2439)
T ss_pred eecCCCceEEEEcCc-------ceEEEecCCcCcEEEeehHH----HHHHHH----------------------------
Confidence 899999999999999 57999999999999999875 222221
Q ss_pred CceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEE
Q 000055 2443 NGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQV 2522 (2548)
Q Consensus 2443 sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLaf 2522 (2548)
-.. ++ ...+|++|+..|.|+||++....++++++.+|++..| |+.-+ .++.+
T Consensus 2374 ------------~~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf----Fr~~g-------~Q~~v 2425 (2439)
T KOG1064|consen 2374 ------------FQA----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF----FRNIG-------MQINV 2425 (2439)
T ss_pred ------------hhh----hh-hhheeeccCcccceEEEEccccchhhcCchhhcccch----hhhcC-------ceeee
Confidence 111 44 5679999999999999999999999999999988776 34333 34466
Q ss_pred cCCe-EEEEECCCc
Q 000055 2523 VSRG-FLSCGGDGS 2535 (2548)
Q Consensus 2523 SPdG-LaSGS~DGt 2535 (2548)
.+.+ |.+||+||+
T Consensus 2426 ~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2426 GQCNRIFSCGADGT 2439 (2439)
T ss_pred ccCceEEEecCCCC
Confidence 6667 999999985
No 2
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=100.00 E-value=1.1e-136 Score=1307.42 Aligned_cols=618 Identities=32% Similarity=0.528 Sum_probs=521.9
Q ss_pred CcEEEEEEEeCCCCCCceeeeEeeeeecCCCCceEEEeecCCCeEEEEecccCCCCcceEEEEEeecccccceEEEeeEe
Q 000055 747 GSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTL 826 (2548)
Q Consensus 747 g~vRfWkc~v~~~~~~~~~W~~w~~~~~~~g~~~~is~s~~gr~a~~~~~~~~~~~~s~lsIwd~~~~s~ggs~vlE~~~ 826 (2548)
|+||+|+++|+.+. ..+.|.++..+.++..+|..|+||.+| |+|++++ ++++|+|||+ .+| +|||++
T Consensus 1 g~~~~~~a~v~~~~-~~~~w~~t~~~~T~i~~~~li~gss~~-k~a~V~~-----~~~~LtIWD~----~~~--~lE~~~ 67 (631)
T PF12234_consen 1 GRIRTWTARVDTES-NKIEWLLTSTFETGISNPSLISGSSIK-KIAVVDS-----SRSELTIWDT----RSG--VLEYEE 67 (631)
T ss_pred CeeEEEEEEEcCCC-CeEEEEEEEEEecCCCCcceEeecccC-cEEEEEC-----CCCEEEEEEc----CCc--EEEEee
Confidence 78999999997664 489999999999999999999999998 6888866 6889999997 455 588888
Q ss_pred ec--cCceEEeeeeecCCCcEEEEEeecceEEEEEecccCcccccccccccccccceeeccCCCCC-ccccccccceeEE
Q 000055 827 SF--DTNIVAVNWLTLENGQSLLGVCLQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPTFA-AHDFTWGRRAIAI 903 (2548)
Q Consensus 827 ~~--~~~iv~LDW~s~edg~~ILtVG~~~~v~lytqlr~d~~~~~~~~~~~~~~~w~~i~~~~t~~-i~dlsW~rdGiLV 903 (2548)
+| ++.|+|||||||||||+||||||+++|+||+|+||||++..+.+...++ +++ .++|+| |+|++|++||+||
T Consensus 68 ~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~-i~i---~~~T~h~Igds~Wl~~G~Lv 143 (631)
T PF12234_consen 68 SFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK-IDI---SSHTPHPIGDSIWLKDGTLV 143 (631)
T ss_pred eecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE-EEe---ecCCCCCccceeEecCCeEE
Confidence 88 8899999999999999999999999999999999998887655554443 111 358877 9999999999999
Q ss_pred EEecceeeeeeccchhhccccccccCCCccccccccccCCcCCCceeeeeccccCcCccCCCCCcccCCCcccccccccc
Q 000055 904 VVHQSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIFTVCDSESSAGDQRGDYESAPSVNIDMKNDH 983 (2548)
Q Consensus 904 VGm~nem~vySQW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 983 (2548)
||+||||+||++|.. . ...+.
T Consensus 144 V~sGNqlfv~dk~~~---~----------------------~~~l~---------------------------------- 164 (631)
T PF12234_consen 144 VGSGNQLFVFDKWLD---T----------------------SQSLG---------------------------------- 164 (631)
T ss_pred EEeCCEEEEECCCcC---c----------------------hhhcc----------------------------------
Confidence 999999999999963 0 00111
Q ss_pred cccccccccCCccccccCHHHHHHHHcCCCCCCchHHHHHHHHcCCchhHHHHHHHHHHhcCCCCCCcccccccCCCCCC
Q 000055 984 LVASDQLKCGGAILGSWSMLEIAEKLRGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIV 1063 (2548)
Q Consensus 984 ~~~~~~~~~~~~~~~~~~lfe~~~~lngpLP~YHPq~L~q~l~~Gk~~~Vk~il~~l~~~l~~~~~~~~~~~~~~~~~~~ 1063 (2548)
+......+||||+|++||||||+||||||+|||++||+++||+||.||+++|+.....+ .... +..
T Consensus 165 ---------~~~~~~~~dl~~~v~~LngpLPvYHPqfL~q~l~~Gk~~lv~~IL~~L~~~L~~~~~~~--i~~~---~~~ 230 (631)
T PF12234_consen 165 ---------SRKILPNWDLFELVSRLNGPLPVYHPQFLIQLLLSGKFKLVKKILLHLFKCLRFLDEGE--ISDL---DSF 230 (631)
T ss_pred ---------ccccCccCCHHHHHHHhCCCCCCcCHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcccc--cccc---ccc
Confidence 00112237899999999999999999999999999999999999999999999865321 1111 123
Q ss_pred cccchhhhhcccccCCCCCCCcccCCCCcccchhhhhhccccccccCCCCCCCchhhHHHHHHHhhccccCcCCCHHHHH
Q 000055 1064 PQILLSTYFEGLLSKGSTDNGFQWSGLNTFSTSLQFRQFAYNMDLDASNSSSSTKSELSGFVELLQNVYELAGVTDAEKM 1143 (2548)
Q Consensus 1064 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~Lp~Lt~~eQ~ 1143 (2548)
+.+++++|+....+....... ... + +. .+...+.+..++++.+..|+|.|+++ +||+||+|||+
T Consensus 231 l~i~~~~~~~~~~~~~~~~~~------~~~-----~---~~-~~~~~~~~~~f~~~~a~~L~e~L~~~-~LP~Lt~~EQ~ 294 (631)
T PF12234_consen 231 LGIPLEKFYESDESDSSVDKT------ESS-----S---DQ-KDLSDEEFSKFNEELADSLSEKLTKI-SLPGLTRHEQM 294 (631)
T ss_pred cCCcHHHHhccCccccccccc------ccc-----c---cc-ccccccCccccCHHHHHHHHHHhhcC-CccCCCHHHHH
Confidence 678888888654322111000 000 0 00 01122223367789999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhcccccccccccCccccchhhhhHHHHHHHhhhcCcccccccccccccccchhhcccCHHHHHhccCC
Q 000055 1144 EILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRFGKLVSAEELAVDSRLIAWAFHSECQETLFGSILP 1223 (2548)
Q Consensus 1144 ~L~al~d~v~~~~~~~~~~~~~~lD~~g~Rfll~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~WA~hS~~qe~Ll~~~~~ 1223 (2548)
+|++|||++++++++ +++||+||+|||+++|++++ .++. .++.++++|+|+|||||++||+|++.+.+
T Consensus 295 ~L~~iie~v~~v~~~-----~~~lD~~g~Rfll~~r~~~~--~~~~-----~~~~~l~~~~i~WA~hS~~qe~Ll~~~~~ 362 (631)
T PF12234_consen 295 TLLAIIETVAEVEKN-----RRSLDENGLRFLLSVRLHQL--HRKS-----LEQSSLSTRDIAWAFHSDSQEELLSLVPP 362 (631)
T ss_pred HHHHHHHHHHHhhhc-----ccCCChhHHHHHHHHHHHHh--hccc-----ccccCcCHHHHHHHHhccCHHHHHHHhhh
Confidence 999999999999987 68999999999999997653 2221 33458999999999999999999998876
Q ss_pred CC-CChHHHHHcccEEEEeChHHHHHHHHHHHHHHHhc--cCCcchhHHHHHHhcchHHHHHHHhccccCC-chhHHHHh
Q 000055 1224 NE-PTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLK--KKDPKDCALLYIALNRIQVLAGLFKISKDEK-DKPLVGFL 1299 (2548)
Q Consensus 1224 ~~-~~W~~~r~~gv~~W~~~~~~lr~~~e~iA~~~~~~--~~dp~~~al~Y~al~Kk~vl~~L~k~~~~~~-~~~~~~Fl 1299 (2548)
.. ++|+++|++||+||+++.+.||+++|+|||++|++ +|||+||||||+|||||+||+||||++.+++ +++|.+||
T Consensus 363 ~~~~~W~~~r~~gv~~W~~~~~~Lr~~~E~iAr~~~~~~~~~dp~~~al~YlAl~Kk~vL~~L~k~a~~~~~~~k~~~Fl 442 (631)
T PF12234_consen 363 QIKLSWEEARELGVGFWLRSIESLRSQFEKIARNEFQKNDTKDPSDCALFYLALGKKKVLAGLWKMASWHKEQQKMAKFL 442 (631)
T ss_pred hccCCHHHHHhhCCEEeecCHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHhccHHHHHHHHHhhhcccccHHHHHHH
Confidence 44 79999999999999999999999999999999998 5999999999999999999999999988764 57899999
Q ss_pred hccCChHHHHHHHHhhHHHHhhcchhHHHHHHHHhcCChhHHHHHHHHHcCChhHHhhhhhhhccCCChhhHHhHhhhcc
Q 000055 1300 SRNFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNLVTKFIL 1379 (2548)
Q Consensus 1300 ~ndF~~~rwr~aA~KNAy~Ll~k~ry~~AaaFFLLag~~~dav~V~~~~l~D~qLA~~i~Rl~e~~~g~~~~~ll~~~vl 1379 (2548)
+|||+|||||+||+||||||||||||++|||||||||+++|||+||++||+|+||||+||||||||+||+++++|+++||
T Consensus 443 ~ndF~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLLag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~gp~~~~ll~~~vL 522 (631)
T PF12234_consen 443 SNDFTEPRWRTAALKNAYALLSKHRYEYAAAFFLLAGSLKDAVNVCLRQLNDPQLAIAIARLYEGDNGPVLKKLLEEHVL 522 (631)
T ss_pred hhcCCChHHHHHHHHhHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHccChhHHHHHHHHHcCCCchHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCChhHHHHHHHHhCChhHHHHHHhcCCcccccccccc-----cCCCccCCCchHHHHHHHhhchhhhhHhhhcc
Q 000055 1380 PSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFAL-----SSNSVAFMDPSIGLYCLMLANKNSMRNAIGEK 1454 (2548)
Q Consensus 1380 p~~~~~~d~wl~s~~~w~l~~~~~a~~~l~~~~~~~~~~~~~~-----~~~~~~f~DP~l~~y~~~l~~~~~~r~~~~~~ 1454 (2548)
|.|.++|||||+||+||+||||++|+++|++.+.....+.+.. ..+++..+||+|+++|.+||+|+ +++..|..
T Consensus 523 p~a~~~~d~wl~s~~~W~L~~~~~ai~~Li~~~~~~~~~~~~~~~~~~~~~sfl~~dp~L~~ly~~Lr~k~-~~~~~g~~ 601 (631)
T PF12234_consen 523 PEAIKEGDRWLASWAFWMLGDYDEAIRALISPPIDLLNESPLSPSSPCNSKSFLVDDPALVVLYQQLRSKN-LQTLKGAS 601 (631)
T ss_pred ccccccCCHHHHHHHHHhcCCHHHHHHHHhcCccccccccccccccccccccccCCCcHHHHHHHHHHHhc-ccccchhc
Confidence 9999999999999999999999999999998776544332211 22344456999998889889886 99999999
Q ss_pred chhhhHHHHHHHHHHH-HHhcCCChhhhhh
Q 000055 1455 NAAILGRWAALMRATA-LNRCGLPLEALDC 1483 (2548)
Q Consensus 1455 ~~~~~~~~~~~~~a~~-~~r~Gc~~LAL~~ 1483 (2548)
.+++.+||.|++++++ |+|||||+|||++
T Consensus 602 ~i~~~~E~~fvl~~a~~y~RmGCd~LaL~L 631 (631)
T PF12234_consen 602 KISPKEEFEFVLRVARIYDRMGCDLLALSL 631 (631)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCchhhccC
Confidence 9999999988886555 8999999999986
No 3
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=100.00 E-value=3.3e-41 Score=440.38 Aligned_cols=756 Identities=19% Similarity=0.197 Sum_probs=525.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhhcccccChhHHHHHHHHHHhcCCch-----------------hhhhhhhcCcccCCc
Q 000055 1571 EIHQYEKLVQNFQQKLYTALAFFEQRFSMDSSSLIAKILSLLCNNGLL-----------------FIGYDLLHGYICQGK 1633 (2548)
Q Consensus 1571 ~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~l~~~~~~~l~n~~ll-----------------~~~y~~l~g~~~~~~ 1633 (2548)
+..+..|+..+- .+.-++ ..|+|.++......+-+.-..--+-|+. -.+++.+|.|+++.+
T Consensus 1540 p~~~~~k~~~~~-s~~~t~-di~aq~~kfvA~l~ilm~eLsTlatG~e~dGg~lr~ql~nwlerev~al~~~cd~~s~ak 1617 (2439)
T KOG1064|consen 1540 PVRQCDKFLRQK-SKNDTE-DIFAQQLKFVACLKILMEELSTLATGYESDGGKLRYQLYNWLEREVKALKDTCDYCSSAK 1617 (2439)
T ss_pred cccccchhhhhh-hcCChH-HHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHhhhhhhhhHHHHHhHHhhhhhhh
Confidence 445556655554 344455 6788888877776666655444444432 346778889998886
Q ss_pred ccccccccccCCcc------ccccchhhHHHh-----------hhhhHHHHHHHHHHhhhccccccc------C--cccc
Q 000055 1634 SQEKSSDTVDGLSL------YFCQHKPLLKAA-----------EDISIFLSRFIAATSITCSHLKST------N--SENV 1688 (2548)
Q Consensus 1634 sqq~~~~~~~~~~l------~~~~~~pll~a~-----------~~~~~~l~~~ls~c~~~c~~~~l~------~--~~~~ 1688 (2548)
+++.+....+..-+ ..|-..|+.... +.++.++|.||+||++|+++.+.| + +.||
T Consensus 1618 ~~~~~~~~~~s~~~~~~~a~~~ph~~~~~~~~~~~~~~r~~Wl~a~q~llr~~ls~cslh~a~~~~lasv~mEll~ll~~ 1697 (2439)
T KOG1064|consen 1618 SKSSKSGDEKSLLLDREAACDVPHQIKCFRLQRESAGKRKKWLKANQFLLRGFLSYCSLHGASGGGLASVRMELLLLLQE 1697 (2439)
T ss_pred cccccccchhhhhhcccccccCCchhhhhhhchhhcccchHHHHHHHHHHHHHHHHHhhccccCCcchhhhHHHHHHHHH
Confidence 66542221111111 112222332221 778999999999999999999944 3 6788
Q ss_pred eeccccccccC---CCcccchhhHHHHhh---hhhccccccCCccccccccCcccc------hHHHHHHHHHHHhhhcch
Q 000055 1689 RHHEVRSRWSN---AQGYYFQSIIFSLWS---LRAAMRTFSGSFPEELITPLFLLD------LYEYYVHFASAWLQRDSK 1756 (2548)
Q Consensus 1689 s~~~~~~~~~~---~~~~~~~~~~~sl~~---~~~~~r~~~~~~~~d~~~~p~~~~------~~~~~~~ll~s~~~~ds~ 1756 (2548)
+||+....... +.+..+|++++++.+ ++++|..|+.+..+|++.+++++. .....++.+.+.+++++.
T Consensus 1698 ~q~e~~~~~l~~~l~~~~t~plL~a~va~~k~~vanp~~~le~~~~dil~~i~q~~~~p~p~~~~~~v~~l~sl~~~~s~ 1777 (2439)
T KOG1064|consen 1698 VQQETTEYQLSSPLPWPTTVPLLFACVAPLKTVVANPLLYLENQTHDILRAIIQEASVPHPDASDVKVYVLHSLAVSLSA 1777 (2439)
T ss_pred HHHHhHHHHHhcccCCCcchhHHHHhhcCceEEEecCceehhhhHHHHHHHHHhccCCCCCChhhcceeeehhhHhhhcc
Confidence 88874422222 335788999888888 899999999999999999875333 222577778888999999
Q ss_pred hhHHHhhhhhhhhccCcccccccchhHHHHHH--hhccccCCCcccc-cccCccceeeccccccccCCCCCCCcchhhhh
Q 000055 1757 GLLQVLQPVLITYTNGHTPYEVDMNNLKTFFH--QSAELLTRNTSID-NMVGDLQVSKFVDDERSTDLMNSIPEDERWQI 1833 (2548)
Q Consensus 1757 ~L~~~L~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~t~~~-~~G~~~~~s~l~~~~~~~~~~~~~~~~e~~~~ 1833 (2548)
|+||.| |+++.++ +-+.. ...| ..-|.++|+|.|+ |||+..++++|.+++++++|++.++++|+.++
T Consensus 1778 ~iY~~l-------~~~~~~~-ll~~r--~~~~~~s~~~~~t~~~~p~~wpgvs~l~~ll~~~~~~d~~~l~vll~E~~~a 1847 (2439)
T KOG1064|consen 1778 CIYQSL-------CDSESYC-LLTQR--PRLRTGSKDELVTPNTSPAQWPGVSGLIALLDSEKEEDQSKLNVLLCESFVA 1847 (2439)
T ss_pred eeeeee-------ccccccc-cccCC--CccccccccccccccCCcccccchHHHHHHhhhccccccCcceEeehHHHHH
Confidence 999999 7788664 22222 1111 1228899999999 99999999999999999999999999999999
Q ss_pred ccchhhh-----hhhhhhhccccccccccccccccceecCccccccccccCCCCcccCCccchhhHHHHHHHHHHHHHHH
Q 000055 1834 MGACLWQ-----HMSRFMKHKLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIGLKEQMRLLTLFLAQLLKSALLH 1908 (2548)
Q Consensus 1834 ~~~sl~~-----~~s~~l~~~~rl~~~~l~~~~~~~~~~g~~s~~~~~~~~p~s~~~~~~~~~~l~~~~l~~~~~~~l~~ 1908 (2548)
+|++||+ ++|+++| ||.+|++++.+|+.+||||+....++.+.+
T Consensus 1848 v~~slfi~~Lat~sS~~l~---rl~~~~~n~~~~~~~fggg~~l~~k~~a~~---------------------------- 1896 (2439)
T KOG1064|consen 1848 VYLSLFIHALATLSSRELF---RLVAHPLNNLMWSLVFGGGLKLECKPQAQS---------------------------- 1896 (2439)
T ss_pred HHHHHHHHHHHhccHHHHH---HHhccccChhheeeeecCceeeeecCcccC----------------------------
Confidence 9999999 8999999 999999999999999999987332211111
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCChhhhhhhhcCCCcchhhhhhccccccCCcCCCcchhhhHHHhhhccCCCccchhhh
Q 000055 1909 ISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTLYQHLNQIVVSMNIINNKDEAAISELLWDVCSDPSIIHEGF 1988 (2548)
Q Consensus 1909 ~~~~~lk~~~~fl~~~~~~~~~~p~~~w~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~lw~~~~~p~~~~~~f 1988 (2548)
.++ +.|... .++- .+ ..|..|+.+ .++++..++|+|
T Consensus 1897 -----------------~~~-~ap~~~-e~t~--------~n----~~~~~t~~~-------------~~~~~~~~~ekf 1932 (2439)
T KOG1064|consen 1897 -----------------LNR-DAPSLS-EETK--------EN----ESKVSTPSK-------------VSVDSPALHEKF 1932 (2439)
T ss_pred -----------------CCC-CCCccc-cccc--------cc----CCCCCCCCC-------------CCCCchhhhhhc
Confidence 001 122111 0000 00 112333332 378899999999
Q ss_pred hccccCcccccccccCCccccccccccccccccccccCccccCccccCCCcccccccccccCCCCCCccccccccccccc
Q 000055 1989 TQEKLNWRSYINCKLSKGWSHINEGVKLKHEIKKTCKNEDKLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANMANEVI 2068 (2548)
Q Consensus 1989 i~e~~n~~~~~~~~~~r~w~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2068 (2548)
|.+.++.......++.+-|.++.+++..+++.+. ++.+++ .++.|- . -...-.+-++. -...+.++.
T Consensus 1933 ippe~~i~~~f~~KP~~~~~D~d~s~~sdne~~~-~~~D~~-----~s~~~l--~----e~~~~~s~sw~-ll~la~~~~ 1999 (2439)
T KOG1064|consen 1933 IPPELSIWDYFKAKPSEDWYDSDESVESDNEDYV-DDDDVR-----SSDEQL--S----EHNNPNSYSWS-LLRLAMVQL 1999 (2439)
T ss_pred CCccccHHHHHhcCcccccccchhhhcccchhcc-cccccc-----ccHHHH--H----hhcCCccccHH-HHHHHHHHH
Confidence 9999999988888888999999886666655443 333321 111110 0 00000111111 112445667
Q ss_pred cCCCCceEEeccCceeEEEEeccCCCCcEEEeecCCceEEeeccCcccccccchhhhccCCCCCCCCCCCCCCCCCCccC
Q 000055 2069 PFQAPKEICKRNGELFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADWPQNGWAGSESTPVPTFVS 2148 (2548)
Q Consensus 2069 ~f~~~~~ii~~~~~~I~a~~iN~~n~~~lalAs~rk~~~~~~l~~~~~~~~~~~~lw~~ad~p~n~w~~~~Stp~~ts~S 2148 (2548)
.|.++.++.++.|+.|..+|.|..|..+..++++ ++.++.+.....+......++|..|+|+.+.|++-..++.++.++
T Consensus 2000 ~~hn~k~~~~~aG~~~spl~~n~i~~~~a~~~~~-g~ai~~~~~l~~~~ntpf~s~~s~a~~~~rlW~~lv~q~~~qevf 2078 (2439)
T KOG1064|consen 2000 ALHNVKEFHKRAGEDISPLCRNYINHRQAELSSN-GPAILRNKALLEPSNTPFKSIDSSADSVKRLWAYLVKQEVLQEVF 2078 (2439)
T ss_pred HhhhhHhhhhhhcccccccccccccccchhhhcC-CcceeehHhhcCccCCcccccccccccHHHHHHHHhcccccceee
Confidence 8899999999999999999999999999999999 777777766655555555689999999999999999999988766
Q ss_pred CCCCCCCCCCccccccCccccccCCCCCCCcccCCccccCCCCccCCccccccccccCCccccCCCCccCCeEEEEEEEc
Q 000055 2149 PGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWETQDDFEDYVDPPATVENISTRAFSSH 2228 (2548)
Q Consensus 2149 P~vg~~S~rGs~l~lggasiG~~ssa~p~~~l~G~~s~gi~G~~g~gaS~i~W~~~ed~e~~v~p~~tl~gV~V~~VsfS 2228 (2548)
=.++.+..++..+.+ |-++.+|+..++++.++++....+.+..++++-+
T Consensus 2079 ik~if~k~~~~e~~l-------------------------------G~~g~~~~iike~e~ivaf~~n~~s~~~ia~an~ 2127 (2439)
T KOG1064|consen 2079 IKYIFTKKKEIEADL-------------------------------GYSGGKARIIKESEEIVAFPVNKESVNTIAFANH 2127 (2439)
T ss_pred eeehhccCCcccccc-------------------------------CcCCCceeEeecccceeccCcCcCCcceEEecCC
Confidence 555543322332222 3344457888899999999988888877888878
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEe-----------------cc--CCCCC-------------------CCCCC
Q 000055 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYG-----------------VL--PAANV-------------------PPPYA 2270 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~-----------------~l--~ghs~-------------------~~~~H 2270 (2548)
++-+.+-+++.-...+.|-+.+.....+.. .. .++.+ -...+
T Consensus 2128 ~~~qe~dvs~~~~~q~~~w~~ne~d~~~~~~d~~~~~s~~~~l~~~~~~~~~s~~~~~~n~~~~~~tq~~~~~~~~~k~~ 2207 (2439)
T KOG1064|consen 2128 HDVQEFDVSSSLAHQYYWWFGNERDTETKGVDPDANHSPPDALASQSTVGSFSNRFTPSNLPWLGSTQTSRGASVMIKHP 2207 (2439)
T ss_pred CcchheeccchhhhhhhhhhcchhhhhhcCCCcccccCchhhcccccccccccccCCcccCCccccceecccceeEeecc
Confidence 887777766555555544332211100000 00 00000 01122
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEE
Q 000055 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2271 ~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrI 2348 (2548)
-..|.++.-+|...+.+||+.||.|++|.+..++.+.... ..|. ..|. .|+.+|+.+..+. .||.+.+
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~r------t~g~-s~vtr~~f~~qGnk~~i~d---~dg~l~l 2277 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFR------TAGN-SRVTRSRFNHQGNKFGIVD---GDGDLSL 2277 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEee------ccCc-chhhhhhhcccCCceeeec---cCCceee
Confidence 3567778888888999999999999999998776432211 1122 4554 3788898888875 7999999
Q ss_pred EECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe---CCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000055 2349 WDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG---KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS---~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
|.+. .++....++|..+...+.|... .+++++ .++.+.+||.- +...
T Consensus 2278 ~q~~---pk~~~s~qchnk~~~Df~Fi~s---------~~~tag~s~d~~n~~lwDtl-~~~~----------------- 2327 (2439)
T KOG1064|consen 2278 WQAS---PKPYTSWQCHNKALSDFRFIGS---------LLATAGRSSDNRNVCLWDTL-LPPM----------------- 2327 (2439)
T ss_pred cccC---CcceeccccCCccccceeeeeh---------hhhccccCCCCCcccchhcc-cCcc-----------------
Confidence 9986 5788889999999999998754 677765 57899999942 1111
Q ss_pred cccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCc
Q 000055 2426 CAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPS 2505 (2548)
Q Consensus 2426 ~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~t 2505 (2548)
.|-+.++|.+.++++++.|..++|++||.+|.|++||++..+++++++..|.++
T Consensus 2328 --------------------~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~~~~~------ 2381 (2439)
T KOG1064|consen 2328 --------------------NSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQALDTRE------ 2381 (2439)
T ss_pred --------------------cceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhhhhhh------
Confidence 112226799999999999999999999999999999999999988774222111
Q ss_pred ccCCCCceeecEEEEEEcCCeEEEEECCCcEEEEECCCC
Q 000055 2506 SRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2506 l~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWDL~sg 2544 (2548)
-+++|+..|.|+||++...
T Consensus 2382 --------------------~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2382 --------------------YFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred --------------------eeeccCcccceEEEEcccc
Confidence 1889999999999999764
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=321.51 Aligned_cols=284 Identities=18% Similarity=0.284 Sum_probs=233.7
Q ss_pred CCCCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE
Q 000055 2212 DPPATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA 2289 (2548)
Q Consensus 2212 ~p~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG 2289 (2548)
.+...+.||. |.|++|+|+|..|++|+.|.++|+||+.+..+..+.++ |...|.|++|+|||+.||+|
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg----------H~~WVlcvawsPDgk~iASG 175 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG----------HKNWVLCVAWSPDGKKIASG 175 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecC----------CccEEEEEEECCCcchhhcc
Confidence 3455666765 89999999999999999999999999999988888754 67999999999999999999
Q ss_pred eCCCcEEEEEcCCCcccccccCccceeccCCcccEEE-------EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee
Q 000055 2290 ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY-------ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI 2362 (2548)
Q Consensus 2290 S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a-------fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl 2362 (2548)
+.||+|++||..+|+..- ..+.+|...|.+ ..|.++++|+++ .||.|+|||+.. +.++..+
T Consensus 176 ~~dg~I~lwdpktg~~~g-------~~l~gH~K~It~Lawep~hl~p~~r~las~s---kDg~vrIWd~~~--~~~~~~l 243 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIG-------RALRGHKKWITALAWEPLHLVPPCRRLASSS---KDGSVRIWDTKL--GTCVRTL 243 (480)
T ss_pred ccCCeEEEecCCCCCccc-------ccccCcccceeEEeecccccCCCccceeccc---CCCCEEEEEccC--ceEEEEe
Confidence 999999999999887542 348899998885 246778899884 999999999976 7899999
Q ss_pred eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC-------CCccccccccCCCCC
Q 000055 2363 TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG-------SSINTCAHADAQTGS 2435 (2548)
Q Consensus 2363 ~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~-------s~~~~~~vafSpdGk 2435 (2548)
.+|+..|+|+.|-..+ ++.+|+.|++|++|+ ...|++.+.+..+... .......-+|.+.|+
T Consensus 244 sgHT~~VTCvrwGG~g--------liySgS~DrtIkvw~---a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 244 SGHTASVTCVRWGGEG--------LIYSGSQDRTIKVWR---ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred ccCccceEEEEEcCCc--------eEEecCCCceEEEEE---ccchhHHHhhcccchheeeeeccchhhhhccccccccc
Confidence 9999999999997664 999999999999999 5567776665322111 011111223333322
Q ss_pred --------------------------C-ccCCCCCceEEEc---------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q 000055 2436 --------------------------G-SKPGDQNGMLWYI---------PKAHLGSVTRISTVPNTSLFLTGSKDGDVK 2479 (2548)
Q Consensus 2436 --------------------------~-v~s~D~sv~Iwdi---------~~gH~~~VtsLafSPdG~~LaSGS~DGtIr 2479 (2548)
+ .++.|.++.+|+- +.+|..-|+.+.|+||++++|++|.|..|+
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVk 392 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVK 392 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccccee
Confidence 2 5667778899973 358999999999999999999999999999
Q ss_pred EEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000055 2480 LWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2480 IWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
+||.++|+.+.+| +||- +.|++++|+.|. |++||.|.++|+|++.+..+
T Consensus 393 LW~g~tGk~lasf--------------RGHv----~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 393 LWDGRTGKFLASF--------------RGHV----AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred eeeCCCcchhhhh--------------hhcc----ceeEEEEeccCccEEEEcCCCceEEEEEeeeeee
Confidence 9999999998765 8886 567899999997 88999999999999988754
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=297.55 Aligned_cols=281 Identities=20% Similarity=0.274 Sum_probs=227.9
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-----CCCEE
Q 000055 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-----YGHRF 2286 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-----dG~~L 2286 (2548)
..+..+|. |.|++|+|||+.||+|+.||+|++||..+|+++.. +..+|...|++++|.| ..++|
T Consensus 150 ~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~---------~l~gH~K~It~Lawep~hl~p~~r~l 220 (480)
T KOG0271|consen 150 LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR---------ALRGHKKWITALAWEPLHLVPPCRRL 220 (480)
T ss_pred ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc---------cccCcccceeEEeecccccCCCccce
Confidence 44555655 89999999999999999999999999999887644 3445779999999976 57899
Q ss_pred EEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceeeecc
Q 000055 2287 ASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASITCH 2365 (2548)
Q Consensus 2287 aSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH 2365 (2548)
++++.||+|+|||+..+.++ .++.+|+..|+|+...|. +++++ |.|++|++|+... +.+.+.+++|
T Consensus 221 as~skDg~vrIWd~~~~~~~--------~~lsgHT~~VTCvrwGG~gliySg---S~DrtIkvw~a~d--G~~~r~lkGH 287 (480)
T KOG0271|consen 221 ASSSKDGSVRIWDTKLGTCV--------RTLSGHTASVTCVRWGGEGLIYSG---SQDRTIKVWRALD--GKLCRELKGH 287 (480)
T ss_pred ecccCCCCEEEEEccCceEE--------EEeccCccceEEEEEcCCceEEec---CCCceEEEEEccc--hhHHHhhccc
Confidence 99999999999999877543 458999999999777655 66665 5999999999976 7899999999
Q ss_pred CCCeEEEEEccCCC---------CC--------------------CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecC
Q 000055 2366 EGGARSISVFDNDL---------GS--------------------GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHS 2416 (2548)
Q Consensus 2366 s~~VtSLafsP~dl---------g~--------------------gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~ 2416 (2548)
...|+.++.+-+.. +. .-.+..+++|+.|+++.+|+-. .+.+++....
T Consensus 288 ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~--~~kkpi~rmt- 364 (480)
T KOG0271|consen 288 AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF--KSKKPITRMT- 364 (480)
T ss_pred chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc--ccccchhhhh-
Confidence 99999998872210 00 0113469999999999999942 2333332221
Q ss_pred CCCCCCccccccccCCCCCC--ccCCCCCceEEE--------cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000055 2417 DRGGSSINTCAHADAQTGSG--SKPGDQNGMLWY--------IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2417 ~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwd--------i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
........+.|+||+++ .++-|..+++|+ .+.||-++|+.++|+.|.++|++||.|.+++|||+++.
T Consensus 365 ---gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 365 ---GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred ---chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence 11233467899999999 667889999998 46789999999999999999999999999999999999
Q ss_pred cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEE
Q 000055 2487 QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2487 ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
++...+ .||.+.| ..+.|+||| +++|+.|..+++|.
T Consensus 442 Kl~~DL--------------pGh~DEV----f~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 442 KLKQDL--------------PGHADEV----FAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eecccC--------------CCCCceE----EEEEecCCCceeecCCCceEEEeec
Confidence 888765 6887644 667999999 88999999999996
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.2e-28 Score=291.12 Aligned_cols=264 Identities=22% Similarity=0.276 Sum_probs=231.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC--CCEEEEEeCCCcEEEEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY--GHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd--G~~LaSGS~DGtVrVWD 2299 (2548)
+..+.|++++..|+||+.+|.++||+..+...+.++++ |.+.|.++.|+|. +..++||+.||++++|+
T Consensus 178 is~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~g----------H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRG----------HTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred ceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEec----------cccceeeEEEccCCCccceeeeccCCceeeec
Confidence 46778889999999999999999999999988888754 6699999999996 67899999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000055 2300 LEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+++.. ..+.+.+|...|. +|+|+|++|+|++ .|.+-++||+++ +..+....||+.+|.+++|+++
T Consensus 248 ~~~e~--------~l~~l~gH~~RVs~VafHPsG~~L~Tas---fD~tWRlWD~~t--k~ElL~QEGHs~~v~~iaf~~D 314 (459)
T KOG0272|consen 248 LSQET--------PLQDLEGHLARVSRVAFHPSGKFLGTAS---FDSTWRLWDLET--KSELLLQEGHSKGVFSIAFQPD 314 (459)
T ss_pred cCCCc--------chhhhhcchhhheeeeecCCCceeeecc---cccchhhccccc--chhhHhhcccccccceeEecCC
Confidence 98653 2345889998887 4999999999995 899999999987 5667777899999999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc------
Q 000055 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI------ 2449 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi------ 2449 (2548)
|.+++|||.|..-+|||+| +|+++..+. ++ ...+-.+.|+|+|.. .+++|++++|||+
T Consensus 315 -------GSL~~tGGlD~~~RvWDlR---tgr~im~L~---gH-~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 315 -------GSLAATGGLDSLGRVWDLR---TGRCIMFLA---GH-IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL 380 (459)
T ss_pred -------CceeeccCccchhheeecc---cCcEEEEec---cc-ccceeeEeECCCceEEeecCCCCcEEEeeecccccc
Confidence 8899999999999999954 799988872 22 223456899999988 7788999999995
Q ss_pred --ccCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000055 2450 --PKAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2450 --~~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
..+|.+-|+.|.|+| .|.+|+|+|.|++++||...+.++++++ .||.+.| .++++++++
T Consensus 381 y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL--------------aGHe~kV----~s~Dis~d~ 442 (459)
T KOG0272|consen 381 YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL--------------AGHEGKV----ISLDISPDS 442 (459)
T ss_pred eecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh--------------cCCccce----EEEEeccCC
Confidence 458999999999999 7899999999999999999999999866 7898765 567999999
Q ss_pred --EEEEECCCcEEEEE
Q 000055 2527 --FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2527 --LaSGS~DGtIrIWD 2540 (2548)
++|+|.|.++|+|.
T Consensus 443 ~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 443 QAIATSSFDRTIKLWR 458 (459)
T ss_pred ceEEEeccCceeeecc
Confidence 99999999999996
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=2.2e-26 Score=291.34 Aligned_cols=245 Identities=20% Similarity=0.321 Sum_probs=209.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--------eeEEEe---------cc----CCCCCCCCCCCCCeEEEEEc
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--------ATATYG---------VL----PAANVPPPYALASISALQFD 2280 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--------~l~t~~---------~l----~ghs~~~~~H~~~VtsVaFS 2280 (2548)
+.|..|++++..+|.|-.|..|++|.+...+ .+.... .. .+......+|.++|..+.|+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 6889999999999999999999999987321 111110 00 00001245788999999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCc
Q 000055 2281 HYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2281 PdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~ 2358 (2548)
|+.++|++++.|++||+|.+.+..+. ..+.||..+|+. |+|-|-+||+++ .|++.++|.... ..+
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s~~--------V~y~GH~~PVwdV~F~P~GyYFatas---~D~tArLWs~d~--~~P 527 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWSCL--------VIYKGHLAPVWDVQFAPRGYYFATAS---HDQTARLWSTDH--NKP 527 (707)
T ss_pred ccccceeeccCCcceeeeecccceeE--------EEecCCCcceeeEEecCCceEEEecC---CCceeeeeeccc--CCc
Confidence 99999999999999999999987543 347899999985 899999999995 999999999986 688
Q ss_pred ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCcc
Q 000055 2359 RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSK 2438 (2548)
Q Consensus 2359 v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~ 2438 (2548)
.+.+.||.+.|.|+.|+|+ +.++++||.|.+||+|| ..+|..++.+
T Consensus 528 lRifaghlsDV~cv~FHPN-------s~Y~aTGSsD~tVRlWD---v~~G~~VRiF------------------------ 573 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPN-------SNYVATGSSDRTVRLWD---VSTGNSVRIF------------------------ 573 (707)
T ss_pred hhhhcccccccceEEECCc-------ccccccCCCCceEEEEE---cCCCcEEEEe------------------------
Confidence 9999999999999999999 78999999999999999 5677777666
Q ss_pred CCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEE
Q 000055 2439 PGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVT 2518 (2548)
Q Consensus 2439 s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vt 2518 (2548)
.||.++|.+|+|+|+|++|++|+.||.|++||+.+++++..+ ++|.+ .|.
T Consensus 574 ------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l--------------~~Ht~----ti~ 623 (707)
T KOG0263|consen 574 ------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL--------------KGHTG----TIY 623 (707)
T ss_pred ------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh--------------hcccC----cee
Confidence 899999999999999999999999999999999999998765 78854 467
Q ss_pred EEEEcCCe--EEEEECCCcEEEEECCC
Q 000055 2519 DIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2519 sLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
++.|+.+| ||+||.|.+|++||+..
T Consensus 624 SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 624 SLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEecCCCEEEecCCCCeEEEEEchh
Confidence 88999999 99999999999999864
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=250.04 Aligned_cols=278 Identities=15% Similarity=0.221 Sum_probs=229.9
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000055 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
++++.+|. |.++.|++|.++++++++||.+.|||.-+...+..+.. -...|-.++|+|.|+++|.|+-
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl----------~s~WVMtCA~sPSg~~VAcGGL 117 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL----------PSSWVMTCAYSPSGNFVACGGL 117 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec----------CceeEEEEEECCCCCeEEecCc
Confidence 45667766 89999999999999999999999999988776666533 1378999999999999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000055 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
|....||++.+...... ....+.+.+|...+.+ |-.| ..|+|+ |.|.++.+||+++ ++.+..|.+|.+.|
T Consensus 118 dN~Csiy~ls~~d~~g~--~~v~r~l~gHtgylScC~f~dD-~~ilT~---SGD~TCalWDie~--g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 118 DNKCSIYPLSTRDAEGN--VRVSRELAGHTGYLSCCRFLDD-NHILTG---SGDMTCALWDIET--GQQTQVFHGHTGDV 189 (343)
T ss_pred CceeEEEeccccccccc--ceeeeeecCccceeEEEEEcCC-CceEec---CCCceEEEEEccc--ceEEEEecCCcccE
Confidence 99999999985522111 1123458899998875 5554 556665 4799999999987 78899999999999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEE
Q 000055 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLW 2447 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iw 2447 (2548)
.++.++|.+ ++.+++|+-|+..++||+| .+.+.+.|.. ....+..+.|-|+|.- .++.|.+.++|
T Consensus 190 ~slsl~p~~------~ntFvSg~cD~~aklWD~R---~~~c~qtF~g----hesDINsv~ffP~G~afatGSDD~tcRly 256 (343)
T KOG0286|consen 190 MSLSLSPSD------GNTFVSGGCDKSAKLWDVR---SGQCVQTFEG----HESDINSVRFFPSGDAFATGSDDATCRLY 256 (343)
T ss_pred EEEecCCCC------CCeEEecccccceeeeecc---CcceeEeecc----cccccceEEEccCCCeeeecCCCceeEEE
Confidence 999999965 8999999999999999965 5788888732 2344667888999887 67778889999
Q ss_pred EcccC-------C---CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000055 2448 YIPKA-------H---LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2448 di~~g-------H---~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
|+... | ..+|++++|+-.|++|++|..|.++.+||.-.++.+..+ .||+++|
T Consensus 257 DlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L--------------~GHeNRv---- 318 (343)
T KOG0286|consen 257 DLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL--------------AGHENRV---- 318 (343)
T ss_pred eecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe--------------eccCCee----
Confidence 96432 2 358999999999999999999999999999988888766 7999776
Q ss_pred EEEEEcCCe--EEEEECCCcEEEEE
Q 000055 2518 TDIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2518 tsLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
+++..+||| ++|||-|.++|||.
T Consensus 319 Scl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 319 SCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEEECCCCcEEEecchhHheeecC
Confidence 567999999 88999999999994
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=5e-24 Score=244.34 Aligned_cols=245 Identities=18% Similarity=0.252 Sum_probs=198.3
Q ss_pred CeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000055 2219 NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2219 gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
.|.+..+..+++|++.++++.|+++++||+.+|+....|.+ |...|.+++|++|.+.+++|+.|++|++|
T Consensus 63 sH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G----------H~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 63 SHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVG----------HTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred ceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEe----------cCCceEEEEecCCCceeecCCCcceeeee
Confidence 34578888899999999999999999999999988777754 66899999999999999999999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEE--EcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
++-.+....+. -.++...|.+ |+|+ ..+|++++ .|++|++||++. .+....+.+|++.++.+.+
T Consensus 133 nt~g~ck~t~~-------~~~~~~WVscvrfsP~~~~p~Ivs~s---~DktvKvWnl~~--~~l~~~~~gh~~~v~t~~v 200 (315)
T KOG0279|consen 133 NTLGVCKYTIH-------EDSHREWVSCVRFSPNESNPIIVSAS---WDKTVKVWNLRN--CQLRTTFIGHSGYVNTVTV 200 (315)
T ss_pred eecccEEEEEe-------cCCCcCcEEEEEEcCCCCCcEEEEcc---CCceEEEEccCC--cchhhccccccccEEEEEE
Confidence 99765332211 1122556665 8887 56888875 999999999986 6778889999999999999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000055 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
+|+ |.++++|+.||.+.+|| +..++++..+ +|.
T Consensus 201 SpD-------GslcasGgkdg~~~Lwd---L~~~k~lysl-------------------------------------~a~ 233 (315)
T KOG0279|consen 201 SPD-------GSLCASGGKDGEAMLWD---LNEGKNLYSL-------------------------------------EAF 233 (315)
T ss_pred CCC-------CCEEecCCCCceEEEEE---ccCCceeEec-------------------------------------cCC
Confidence 999 88999999999999999 4556766664 588
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEEC
Q 000055 2455 GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG 2532 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~ 2532 (2548)
..|.+++|+|+...|+.+. +-.|+|||+.++.++.+++..-.+.+ .+.. + ....+++|+++| |++|-.
T Consensus 234 ~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s-----~~~~-~---~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 234 DIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPS-----SKAG-D---PICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred CeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccc-----cccC-C---cEEEEEEEcCCCcEEEeeec
Confidence 8999999999987777664 45699999999999988843222211 1111 1 125688999999 999999
Q ss_pred CCcEEEEECC
Q 000055 2533 DGSVKLIQLE 2542 (2548)
Q Consensus 2533 DGtIrIWDL~ 2542 (2548)
|+.|++|.+.
T Consensus 304 d~~irv~qv~ 313 (315)
T KOG0279|consen 304 DNVIRVWQVA 313 (315)
T ss_pred CCcEEEEEee
Confidence 9999999975
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=2.6e-24 Score=242.80 Aligned_cols=260 Identities=17% Similarity=0.271 Sum_probs=210.1
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccC
Q 000055 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPM 2311 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~ 2311 (2548)
-+|++++.|.+||+|...+|.+..++.- ..+.|..+...|+++.||+|+. -.||+||++++...
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh----------~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~----- 74 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQH----------PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN----- 74 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEec----------CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-----
Confidence 3788999999999999999999999842 1367999999999999988775 68999999987532
Q ss_pred ccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE
Q 000055 2312 ESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV 2389 (2548)
Q Consensus 2312 ~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV 2389 (2548)
+..++.+|...|.+ |..+|+..++|| +||+++|||++. ..+.+.+ .|..+|++|..+|+ ...|+
T Consensus 75 -Pv~t~e~h~kNVtaVgF~~dgrWMyTgs---eDgt~kIWdlR~--~~~qR~~-~~~spVn~vvlhpn-------QteLi 140 (311)
T KOG0315|consen 75 -PVATFEGHTKNVTAVGFQCDGRWMYTGS---EDGTVKIWDLRS--LSCQRNY-QHNSPVNTVVLHPN-------QTELI 140 (311)
T ss_pred -ceeEEeccCCceEEEEEeecCeEEEecC---CCceEEEEeccC--cccchhc-cCCCCcceEEecCC-------cceEE
Confidence 34568899888875 888999999986 999999999997 3343444 57799999999999 56899
Q ss_pred EEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc--cCCCCCceEEEc--------------ccCC
Q 000055 2390 TGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS--KPGDQNGMLWYI--------------PKAH 2453 (2548)
Q Consensus 2390 SGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v--~s~D~sv~Iwdi--------------~~gH 2453 (2548)
+|..+|.|++||++ ...+...+ -.........++..+||..+ +...|+.++|++ +++|
T Consensus 141 s~dqsg~irvWDl~---~~~c~~~l---iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLG---ENSCTHEL---IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred eecCCCcEEEEEcc---CCcccccc---CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence 99999999999965 33333332 12223456778899999984 445566789985 3579
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE
Q 000055 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA-QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC 2530 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg-ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG 2530 (2548)
++.+..+.++|++++||++|.|.+++||+.++. +.... +.||..++ ++++||.|| |+||
T Consensus 215 ~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~--------------l~gh~rWv----Wdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELV--------------LTGHQRWV----WDCAFSADGEYLVTA 276 (311)
T ss_pred cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEE--------------eecCCceE----EeeeeccCccEEEec
Confidence 999999999999999999999999999999877 22222 47888666 566999999 9999
Q ss_pred ECCCcEEEEECCCCc
Q 000055 2531 GGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2531 S~DGtIrIWDL~sg~ 2545 (2548)
+.|+.+|+|+++.+.
T Consensus 277 ssd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 277 SSDHTARLWDLSAGK 291 (311)
T ss_pred CCCCceeecccccCc
Confidence 999999999998874
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=1.7e-24 Score=270.92 Aligned_cols=246 Identities=20% Similarity=0.274 Sum_probs=203.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCcee-EEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l-~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWD 2299 (2548)
+.+++...+|.+|+||+.|.+|++|.++++... ..+. ...+|.+.|.+++++.. ..+|+++|.|+++++|+
T Consensus 368 vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a-------~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~ 440 (775)
T KOG0319|consen 368 VLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA-------QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWD 440 (775)
T ss_pred eeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh-------hhcccccccceeeecccCccEEEEecCCceEEEec
Confidence 355554467789999999999999998544322 2222 23457799999999774 56899999999999999
Q ss_pred cCCCccccc-ccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000055 2300 LEVGGRSNV-RPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2300 l~tgk~i~i-~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
+...+.... .......+...|..+|.+ ++|+.++||||+ .|++.+||++.. .....++.||..+|++|.|++
T Consensus 441 l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S---qDktaKiW~le~--~~l~~vLsGH~RGvw~V~Fs~ 515 (775)
T KOG0319|consen 441 LPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS---QDKTAKIWDLEQ--LRLLGVLSGHTRGVWCVSFSK 515 (775)
T ss_pred CCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc---cccceeeecccC--ceEEEEeeCCccceEEEEecc
Confidence 986332211 111122345678888875 899999999985 999999999974 778899999999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCC
Q 000055 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS 2456 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~ 2456 (2548)
. .+.++|+|.|++|+||. +.+..|++++ .||+..
T Consensus 516 ~-------dq~laT~SgD~TvKIW~---is~fSClkT~------------------------------------eGH~~a 549 (775)
T KOG0319|consen 516 N-------DQLLATCSGDKTVKIWS---ISTFSCLKTF------------------------------------EGHTSA 549 (775)
T ss_pred c-------cceeEeccCCceEEEEE---eccceeeeee------------------------------------cCccce
Confidence 8 57999999999999999 7788999998 899999
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCC
Q 000055 2457 VTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDG 2534 (2548)
Q Consensus 2457 VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DG 2534 (2548)
|..+.|-.+|+.|++++.||.|++|++++++++.++ .+|.+.||+. +.+|.+ ++|||+||
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl--------------D~H~DrvWaL----~~~~~~~~~~tgg~Dg 611 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL--------------DAHNDRVWAL----SVSPLLDMFVTGGGDG 611 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh--------------hhccceeEEE----eecCccceeEecCCCe
Confidence 999999999999999999999999999999999876 7899887654 788888 88999999
Q ss_pred cEEEEECCC
Q 000055 2535 SVKLIQLED 2543 (2548)
Q Consensus 2535 tIrIWDL~s 2543 (2548)
.|.+|.=.+
T Consensus 612 ~i~~wkD~T 620 (775)
T KOG0319|consen 612 RIIFWKDVT 620 (775)
T ss_pred EEEEeecCc
Confidence 999997543
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=5.9e-25 Score=262.14 Aligned_cols=232 Identities=21% Similarity=0.264 Sum_probs=197.7
Q ss_pred CCccCCeE--EEEEEEcCC--CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE
Q 000055 2214 PATVENIS--TRAFSSHPL--RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA 2289 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPd--G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG 2289 (2548)
..++.+|. +.++.|||. +..+|||+.||+|++|++.+...+..+. +|...|..++|+|+|++|+|+
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~----------gH~~RVs~VafHPsG~~L~Ta 279 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE----------GHLARVSRVAFHPSGKFLGTA 279 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh----------cchhhheeeeecCCCceeeec
Confidence 55677777 899999997 6689999999999999999887777664 366899999999999999999
Q ss_pred eCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC
Q 000055 2290 ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367 (2548)
Q Consensus 2290 S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~ 2367 (2548)
+.|.+-++||++++..... ..||...|.+ |.+||.++++|| .|..-+|||+++ +.++..+.+|..
T Consensus 280 sfD~tWRlWD~~tk~ElL~--------QEGHs~~v~~iaf~~DGSL~~tGG---lD~~~RvWDlRt--gr~im~L~gH~k 346 (459)
T KOG0272|consen 280 SFDSTWRLWDLETKSELLL--------QEGHSKGVFSIAFQPDGSLAATGG---LDSLGRVWDLRT--GRCIMFLAGHIK 346 (459)
T ss_pred ccccchhhcccccchhhHh--------hcccccccceeEecCCCceeeccC---ccchhheeeccc--CcEEEEeccccc
Confidence 9999999999998865432 5789998874 899999999998 899999999998 899999999999
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC-CCC--ccCCCCCc
Q 000055 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT-GSG--SKPGDQNG 2444 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd-Gk~--v~s~D~sv 2444 (2548)
.|.+|+|+|+ |..|+|||.|++++|||+|+. +.+.++ ..+.. ..+.+-|+|. |.+ .++.|+++
T Consensus 347 ~I~~V~fsPN-------Gy~lATgs~Dnt~kVWDLR~r---~~ly~i---pAH~n-lVS~Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 347 EILSVAFSPN-------GYHLATGSSDNTCKVWDLRMR---SELYTI---PAHSN-LVSQVKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred ceeeEeECCC-------ceEEeecCCCCcEEEeeeccc---ccceec---ccccc-hhhheEecccCCeEEEEcccCcce
Confidence 9999999999 789999999999999998852 223333 22222 2345667774 555 78899999
Q ss_pred eEEE--------cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000055 2445 MLWY--------IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWD 2482 (2548)
Q Consensus 2445 ~Iwd--------i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWD 2482 (2548)
+||. .+.||++.|.++..+|++++++|++.|.++++|.
T Consensus 413 kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 413 KIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9997 3569999999999999999999999999999995
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=4e-24 Score=249.78 Aligned_cols=243 Identities=21% Similarity=0.386 Sum_probs=211.5
Q ss_pred CccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000055 2215 ATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
+.+.+|. |+|+++.|.+.++++|+.|++++|||+.+|+...++. +|...|..+++++...++++++.|
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt----------Ghi~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT----------GHIETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec----------chhheeeeeeecccCceEEEecCC
Confidence 3455555 7999999999999999999999999999999888863 366899999999999999999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000055 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
+.|+.||++..+.+. .+.||-..|.+ ..|.-..|++|| .|.++++||+++ ...++.+.||...|.
T Consensus 215 k~VKCwDLe~nkvIR--------~YhGHlS~V~~L~lhPTldvl~t~g---rDst~RvWDiRt--r~~V~~l~GH~~~V~ 281 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIR--------HYHGHLSGVYCLDLHPTLDVLVTGG---RDSTIRVWDIRT--RASVHVLSGHTNPVA 281 (460)
T ss_pred CeeEEEechhhhhHH--------HhccccceeEEEeccccceeEEecC---CcceEEEeeecc--cceEEEecCCCCcce
Confidence 999999999776432 37899999987 567788999997 999999999998 678999999999999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000055 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
+|.+.|. .+.+++|+.|++|++||+| .|+...++
T Consensus 282 ~V~~~~~-------dpqvit~S~D~tvrlWDl~---agkt~~tl------------------------------------ 315 (460)
T KOG0285|consen 282 SVMCQPT-------DPQVITGSHDSTVRLWDLR---AGKTMITL------------------------------------ 315 (460)
T ss_pred eEEeecC-------CCceEEecCCceEEEeeec---cCceeEee------------------------------------
Confidence 9999988 5799999999999999955 46666665
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEE
Q 000055 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLS 2529 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaS 2529 (2548)
..|...|.+++.+|....||++|.| .|+-|++..|..++.+ .||... +..++...|| +++
T Consensus 316 t~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl--------------sgh~~i----intl~~nsD~v~~~ 376 (460)
T KOG0285|consen 316 THHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL--------------SGHNAI----INTLSVNSDGVLVS 376 (460)
T ss_pred ecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc--------------ccccce----eeeeeeccCceEEE
Confidence 6799999999999999999999988 6899999998887644 778754 4566899999 899
Q ss_pred EECCCcEEEEECCCCc
Q 000055 2530 CGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2530 GS~DGtIrIWDL~sg~ 2545 (2548)
|++.|.|.+||.++|.
T Consensus 377 G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKSGH 392 (460)
T ss_pred cCCceEEEEEecCcCc
Confidence 9999999999998874
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.92 E-value=2.6e-23 Score=238.47 Aligned_cols=245 Identities=22% Similarity=0.336 Sum_probs=198.8
Q ss_pred CCccCCeE--EEEEEEcCC-CCEEEEEECCCeEEEEEcCCC-----ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCE
Q 000055 2214 PATVENIS--TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKD-----KATATYGVLPAANVPPPYALASISALQFDHYGHR 2285 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg-----~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~ 2285 (2548)
..++++|. |..++..+. ...+++++.|.++.+|++... ..++.+ .+|...|..+..+++|++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~----------~GHsH~v~dv~~s~dg~~ 77 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL----------TGHSHFVSDVVLSSDGNF 77 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee----------eccceEecceEEccCCce
Confidence 34556665 677777676 457889999999999998753 334443 336688999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee
Q 000055 2286 FASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2548)
Q Consensus 2286 LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~ 2363 (2548)
.++++.||++++||+.+++.. +.|.+|..+|.+ +++|.+.+++| |.|++|++|++. +.+..++.
T Consensus 78 alS~swD~~lrlWDl~~g~~t--------~~f~GH~~dVlsva~s~dn~qivSG---SrDkTiklwnt~---g~ck~t~~ 143 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGEST--------RRFVGHTKDVLSVAFSTDNRQIVSG---SRDKTIKLWNTL---GVCKYTIH 143 (315)
T ss_pred EEeccccceEEEEEecCCcEE--------EEEEecCCceEEEEecCCCceeecC---CCcceeeeeeec---ccEEEEEe
Confidence 999999999999999988532 348899999985 89999999998 499999999997 45666665
Q ss_pred cc--CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCC
Q 000055 2364 CH--EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGD 2441 (2548)
Q Consensus 2364 gH--s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D 2441 (2548)
.+ .+.|.|+.|+|+. ..+.|+++|.|++|++||++. .+....
T Consensus 144 ~~~~~~WVscvrfsP~~-----~~p~Ivs~s~DktvKvWnl~~---~~l~~~---------------------------- 187 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNE-----SNPIIVSASWDKTVKVWNLRN---CQLRTT---------------------------- 187 (315)
T ss_pred cCCCcCcEEEEEEcCCC-----CCcEEEEccCCceEEEEccCC---cchhhc----------------------------
Confidence 44 7899999999994 267999999999999999653 233222
Q ss_pred CCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEE
Q 000055 2442 QNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2442 ~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa 2521 (2548)
+.||.+.++.++++|||.+.++|+.||.+.+||++.++.++++ +|. ..|.+++
T Consensus 188 --------~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl---------------~a~----~~v~sl~ 240 (315)
T KOG0279|consen 188 --------FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL---------------EAF----DIVNSLC 240 (315)
T ss_pred --------cccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec---------------cCC----CeEeeEE
Confidence 2789999999999999999999999999999999999998877 343 3467779
Q ss_pred EcCCe-EEEEECCCcEEEEECCCCc
Q 000055 2522 VVSRG-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2522 fSPdG-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
|+|+. -+....+..|+|||++++.
T Consensus 241 fspnrywL~~at~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 241 FSPNRYWLCAATATSIKIWDLESKA 265 (315)
T ss_pred ecCCceeEeeccCCceEEEeccchh
Confidence 99999 4555666779999998864
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.92 E-value=2.2e-23 Score=251.12 Aligned_cols=247 Identities=20% Similarity=0.351 Sum_probs=207.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+++++|+.+|..||+|+.||.++||+.. |..+.++. .|.++|.++.|+..|+++++++.||++.+||.-
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~----------~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLG----------QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH 306 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhh----------ccCCceEEEEEcCCCCEEEeccCCccEEEEecc
Confidence 6999999999999999999999999965 44444442 377999999999999999999999999999986
Q ss_pred CCccccc---------------------------------ccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000055 2302 VGGRSNV---------------------------------RPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2302 tgk~i~i---------------------------------~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
++..... ....+..++.+|.+.|.+ |+|.|.+|+++ |+|+++
T Consensus 307 ~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~---SdD~Tl 383 (524)
T KOG0273|consen 307 TGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC---SDDGTL 383 (524)
T ss_pred CceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe---cCCCee
Confidence 6531111 111345667889999987 89999999998 499999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC--CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000055 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS--GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~--gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
+||.... ..+++.+.+|+..|..+.|+|.+-+. .-.+..+++++.|++|++|| ...+.++..+
T Consensus 384 kiWs~~~--~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd---v~~gv~i~~f---------- 448 (524)
T KOG0273|consen 384 KIWSMGQ--SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD---VESGVPIHTL---------- 448 (524)
T ss_pred EeeecCC--CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE---ccCCceeEee----------
Confidence 9999865 67899999999999999999984111 11345899999999999999 6778888776
Q ss_pred ccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccC
Q 000055 2425 TCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQP 2504 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~ 2504 (2548)
..|..+|++|+|+|+|+++|+|+.||.|.+|+.+++++++.+
T Consensus 449 --------------------------~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~------------ 490 (524)
T KOG0273|consen 449 --------------------------MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY------------ 490 (524)
T ss_pred --------------------------ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee------------
Confidence 789999999999999999999999999999999999999877
Q ss_pred cccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECC
Q 000055 2505 SSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2505 tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
++- ..|..+.|+.+| +..+-.||.+.+-|+.
T Consensus 491 --~~~-----~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 491 --QGT-----GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred --cCC-----CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 233 337888999999 7788899999998874
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.6e-24 Score=248.72 Aligned_cols=246 Identities=18% Similarity=0.316 Sum_probs=211.8
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000055 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
...+.+++ +..+-|||+-...++++.|++|++||..+|+....++ +|.+.|.+|.|+..|+++++++.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr----------GHt~sv~di~~~a~Gk~l~tcSs 170 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR----------GHTDSVFDISFDASGKYLATCSS 170 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh----------ccccceeEEEEecCccEEEecCC
Confidence 34455555 7889999999999999999999999999999866654 36688999999999999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000055 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
|=.+++||.++- +...+...+|...|. ++-|.|.+|++++ .|.+|+.|++.+ +-++.++.+|...|
T Consensus 171 Dl~~~LWd~~~~-------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s---rD~tik~We~~t--g~cv~t~~~h~ewv 238 (406)
T KOG0295|consen 171 DLSAKLWDFDTF-------FRCIKSLIGHEHGVSSVFFLPLGDHILSCS---RDNTIKAWECDT--GYCVKTFPGHSEWV 238 (406)
T ss_pred ccchhheeHHHH-------HHHHHHhcCcccceeeEEEEecCCeeeecc---cccceeEEeccc--ceeEEeccCchHhE
Confidence 999999999753 112334667777665 4778999999995 999999999987 78999999999999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc
Q 000055 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi 2449 (2548)
..++.+.+ |.++++++.|.+|++|- ..++++...+
T Consensus 239 r~v~v~~D-------Gti~As~s~dqtl~vW~---~~t~~~k~~l----------------------------------- 273 (406)
T KOG0295|consen 239 RMVRVNQD-------GTIIASCSNDQTLRVWV---VATKQCKAEL----------------------------------- 273 (406)
T ss_pred EEEEecCC-------eeEEEecCCCceEEEEE---eccchhhhhh-----------------------------------
Confidence 99999888 88999999999999999 6667666555
Q ss_pred ccCCCCCEEEEEEeCC---------------CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCcee
Q 000055 2450 PKAHLGSVTRISTVPN---------------TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVR 2514 (2548)
Q Consensus 2450 ~~gH~~~VtsLafSPd---------------G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~ 2514 (2548)
.+|+.+|.+++|.|. ++++++|+.|++|++||+.+|.++.++ .||.++|+
T Consensus 274 -R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL--------------~ghdnwVr 338 (406)
T KOG0295|consen 274 -REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL--------------VGHDNWVR 338 (406)
T ss_pred -hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE--------------ecccceee
Confidence 779999999999773 269999999999999999999999887 78997774
Q ss_pred ecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000055 2515 AGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2515 a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+++|+|.| |+||.+|+++++||+.+++
T Consensus 339 ----~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 339 ----GVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred ----eeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 55999999 8999999999999999875
No 17
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.91 E-value=2.8e-24 Score=259.92 Aligned_cols=273 Identities=16% Similarity=0.239 Sum_probs=217.4
Q ss_pred CccCCeE--EEEEEEcC-CCCEEEEEECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000055 2215 ATVENIS--TRAFSSHP-LRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSP-dG~~LASGS~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
.++.+|+ |.++.|.| .+.+|++|+.|+.|+||++-. ++++++|. +|..+|.+++|+++|..|+|++
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~----------gH~k~Vrd~~~s~~g~~fLS~s 277 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK----------GHRKPVRDASFNNCGTSFLSAS 277 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh----------cchhhhhhhhccccCCeeeeee
Confidence 3456666 78999999 899999999999999999886 77777764 3669999999999999999999
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000055 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
.|++|++||+++|++.... ..++.-.+..+.|++ +.+++|+ .|+.|+.||+++ ++.++.+..|-+.|
T Consensus 278 fD~~lKlwDtETG~~~~~f-------~~~~~~~cvkf~pd~~n~fl~G~---sd~ki~~wDiRs--~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 278 FDRFLKLWDTETGQVLSRF-------HLDKVPTCVKFHPDNQNIFLVGG---SDKKIRQWDIRS--GKVVQEYDRHLGAI 345 (503)
T ss_pred cceeeeeeccccceEEEEE-------ecCCCceeeecCCCCCcEEEEec---CCCcEEEEeccc--hHHHHHHHhhhhhe
Confidence 9999999999999765321 223333444588888 6777776 799999999998 67889999999999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCcc--CCCCCceEE
Q 000055 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSK--PGDQNGMLW 2447 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~--s~D~sv~Iw 2447 (2548)
..+.|.+. +..+++.+.|++++||+.+. +-.++.. .........++...|++++.+ +.++.+.++
T Consensus 346 ~~i~F~~~-------g~rFissSDdks~riWe~~~---~v~ik~i---~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~if 412 (503)
T KOG0282|consen 346 LDITFVDE-------GRRFISSSDDKSVRIWENRI---PVPIKNI---ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIF 412 (503)
T ss_pred eeeEEccC-------CceEeeeccCccEEEEEcCC---Cccchhh---cchhhccCcceecCCCCCeehhhccCceEEEE
Confidence 99999998 78999999999999999653 2222221 111223345678889988833 455666666
Q ss_pred E-----------cccCCCC--CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCcee
Q 000055 2448 Y-----------IPKAHLG--SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVR 2514 (2548)
Q Consensus 2448 d-----------i~~gH~~--~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~ 2514 (2548)
. .++||.. .-..+.|+|||++|++|+.||.+.+||.++-+++..+ ++|.+
T Consensus 413 s~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l--------------kah~~--- 475 (503)
T KOG0282|consen 413 STVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL--------------KAHDQ--- 475 (503)
T ss_pred ecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc--------------ccCCc---
Confidence 5 3567754 4567889999999999999999999999998888766 67754
Q ss_pred ecEEEEEEcCCe---EEEEECCCcEEEEE
Q 000055 2515 AGVTDIQVVSRG---FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2515 a~VtsLafSPdG---LaSGS~DGtIrIWD 2540 (2548)
++..+.|+|.. +||||.||.|++|+
T Consensus 476 -~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 476 -PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -ceEEEEecCCCcceeEecccCceeEecC
Confidence 35667999987 99999999999996
No 18
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=3.1e-22 Score=231.41 Aligned_cols=264 Identities=21% Similarity=0.388 Sum_probs=213.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+++++++|+.||.|++|++.+++....+.. |...+..+.|+++++++++++.||.|++||+.
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG----------HTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec----------CCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 78999999999999999999999999998875555432 44778999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+++.. ..+..|...+.+ ++++++++++++ .|+.|.+||++. .+....+..|.+.+.++.|+|+
T Consensus 82 ~~~~~--------~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~-- 146 (289)
T cd00200 82 TGECV--------RTLTGHTSYVSSVAFSPDGRILSSSS---RDKTIKVWDVET--GKCLTTLRGHTDWVNSVAFSPD-- 146 (289)
T ss_pred cccce--------EEEeccCCcEEEEEEcCCCCEEEEec---CCCeEEEEECCC--cEEEEEeccCCCcEEEEEEcCc--
Confidence 75322 225566666654 778888888874 699999999985 5667778889999999999997
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc-------
Q 000055 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP------- 2450 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~------- 2450 (2548)
+.++++++.||.|++||++ +++.+..+. ........+.++++++. +++.++.+++|+..
T Consensus 147 -----~~~l~~~~~~~~i~i~d~~---~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 214 (289)
T cd00200 147 -----GTFVASSSQDGTIKLWDLR---TGKCVATLT----GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214 (289)
T ss_pred -----CCEEEEEcCCCcEEEEEcc---ccccceeEe----cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc
Confidence 5688888889999999954 455554442 11123556788899855 56668899999853
Q ss_pred -cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--E
Q 000055 2451 -KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2451 -~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--L 2527 (2548)
..|...|.+++|+|++.++++++.||.|++||+.+++.+..+ .+|.. .+.+++|+|++ +
T Consensus 215 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~--------------~~~~~----~i~~~~~~~~~~~l 276 (289)
T cd00200 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL--------------SGHTN----SVTSLAWSPDGKRL 276 (289)
T ss_pred hhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc--------------cccCC----cEEEEEECCCCCEE
Confidence 368889999999999999999988999999999998888766 34543 35778999987 8
Q ss_pred EEEECCCcEEEEE
Q 000055 2528 LSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2528 aSGS~DGtIrIWD 2540 (2548)
++++.||.|++|+
T Consensus 277 ~~~~~d~~i~iw~ 289 (289)
T cd00200 277 ASGSADGTIRIWD 289 (289)
T ss_pred EEecCCCeEEecC
Confidence 9999999999996
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=1e-22 Score=254.57 Aligned_cols=270 Identities=20% Similarity=0.305 Sum_probs=225.4
Q ss_pred eEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-CcEEEE
Q 000055 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-GTVCTW 2298 (2548)
Q Consensus 2220 V~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-GtVrVW 2298 (2548)
..+.|.+||+..+.|++|=..|...+|++..-..++.+..- ...|..+.|+..|+.++.|+.. |.+-||
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis----------~~~I~t~~~N~tGDWiA~g~~klgQLlVw 335 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSIS----------DQKILTVSFNSTGDWIAFGCSKLGQLLVW 335 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecc----------cceeeEEEecccCCEEEEcCCccceEEEE
Confidence 45899999999999999999999999999999988887641 2679999999999999998776 899999
Q ss_pred EcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
++.+..-+ ...++|...+.+ ++|||+++|||+ +||.|+|||... +-|+.+|..|+.+|+.+.|+.
T Consensus 336 eWqsEsYV--------lKQQgH~~~i~~l~YSpDgq~iaTG~---eDgKVKvWn~~S--gfC~vTFteHts~Vt~v~f~~ 402 (893)
T KOG0291|consen 336 EWQSESYV--------LKQQGHSDRITSLAYSPDGQLIATGA---EDGKVKVWNTQS--GFCFVTFTEHTSGVTAVQFTA 402 (893)
T ss_pred Eeecccee--------eeccccccceeeEEECCCCcEEEecc---CCCcEEEEeccC--ceEEEEeccCCCceEEEEEEe
Confidence 99865422 225789888875 899999999997 999999999986 779999999999999999998
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCC---CceEE------
Q 000055 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQ---NGMLW------ 2447 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~---sv~Iw------ 2447 (2548)
. ++.+++.+.||+|+.|| +...++.+++. ........+++..|.|..+..++. .+.+|
T Consensus 403 ~-------g~~llssSLDGtVRAwD---lkRYrNfRTft---~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq 469 (893)
T KOG0291|consen 403 R-------GNVLLSSSLDGTVRAWD---LKRYRNFRTFT---SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ 469 (893)
T ss_pred c-------CCEEEEeecCCeEEeee---ecccceeeeec---CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe
Confidence 8 78999999999999999 56677777772 233344567788888998555443 34555
Q ss_pred --EcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-cEEEEecccccccccccCcccCCCCceeecEEEEEEcC
Q 000055 2448 --YIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA-QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2448 --di~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg-ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
|++.||+++|.+++|+|++..|++||.|.+||+||+-.. ..+.+++ +...|..++|+|
T Consensus 470 llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-------------------i~sdvl~vsfrP 530 (893)
T KOG0291|consen 470 LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-------------------IRSDVLAVSFRP 530 (893)
T ss_pred eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-------------------eccceeEEEEcC
Confidence 467899999999999999999999999999999998643 3344441 123467889999
Q ss_pred Ce--EEEEECCCcEEEEECCCC
Q 000055 2525 RG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2525 dG--LaSGS~DGtIrIWDL~sg 2544 (2548)
+| ++++.-||.|.+||...+
T Consensus 531 dG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 531 DGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred CCCeEEEEEecceEEEEEhhhc
Confidence 99 999999999999999765
No 20
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.6e-23 Score=259.42 Aligned_cols=275 Identities=18% Similarity=0.274 Sum_probs=222.7
Q ss_pred EEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000055 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
++..++|||..++++++--.|.|++||.+.+..+..|.. |.++|..++|+|++..|++|+.|..|+||+.
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFde----------HdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE----------HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc----------cCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 368999999999999999999999999999998888754 6699999999999999999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000055 2301 EVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
.+.+++ .++.||-+.|. +|++.--.|+++ |+|.+|+||+..+ .+++..+.||...|.|..|+|.
T Consensus 81 k~rrcl--------ftL~GHlDYVRt~~FHheyPWIlSA---SDDQTIrIWNwqs--r~~iavltGHnHYVMcAqFhpt- 146 (1202)
T KOG0292|consen 81 KTRRCL--------FTLLGHLDYVRTVFFHHEYPWILSA---SDDQTIRIWNWQS--RKCIAVLTGHNHYVMCAQFHPT- 146 (1202)
T ss_pred ccceeh--------hhhccccceeEEeeccCCCceEEEc---cCCCeEEEEeccC--CceEEEEecCceEEEeeccCCc-
Confidence 877654 34789999886 478888899998 4999999999987 7899999999999999999997
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceee-----e---------ecC--C------CCCCCccccccccCCCCCC
Q 000055 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKK-----H---------KHS--D------RGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~-----t---------l~~--~------~~~s~~~~~~vafSpdGk~ 2436 (2548)
..+++|+|-|.+||+||+..+..+...- . +.. + -....-...-++|.|.-..
T Consensus 147 ------EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 147 ------EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred ------cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 5699999999999999984321111000 0 000 0 0001112234567776555
Q ss_pred --ccCCCCCceEEEc----------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccC
Q 000055 2437 --SKPGDQNGMLWYI----------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQP 2504 (2548)
Q Consensus 2437 --v~s~D~sv~Iwdi----------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~ 2504 (2548)
+++.|+.+++|+. ..||.+.|.++-|+|..+++++.|+|++|+|||+..++.+++|..+|.
T Consensus 221 iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend------- 293 (1202)
T KOG0292|consen 221 IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND------- 293 (1202)
T ss_pred EEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC-------
Confidence 6778888999974 468999999999999999999999999999999999999998842222
Q ss_pred cccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCC
Q 000055 2505 SSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2505 tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~s 2543 (2548)
+ .+.++.+|.. |.++|.|+-+.+|.++.
T Consensus 294 -------R----FW~laahP~lNLfAAgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 294 -------R----FWILAAHPELNLFAAGHDSGMIVFKLER 322 (1202)
T ss_pred -------e----EEEEEecCCcceeeeecCCceEEEEEcc
Confidence 2 3566889988 88888999888998874
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.91 E-value=7.5e-24 Score=251.60 Aligned_cols=266 Identities=19% Similarity=0.260 Sum_probs=216.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|..+.|.|+|+.|++|+..|.+.+|+..+-..... ++ .|...|+++.|+++|.++++|+.+|.|++|+.+
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti---lQ-------aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn 168 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI---LQ-------AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN 168 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCceeeHHHH---hh-------hhcccceeEEEccCCCEEEEcCCCceEEecccc
Confidence 68899999999999999999999999643211111 12 256999999999999999999999999999987
Q ss_pred CCcccccccCccceeccCCc-ccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHA-MDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~-~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
.... +.+.+|. ..|. +|+|+...|+++ |+||+|+|||... .+....+.+|.-.|.++.|+|.
T Consensus 169 mnnV---------k~~~ahh~eaIRdlafSpnDskF~t~---SdDg~ikiWdf~~--~kee~vL~GHgwdVksvdWHP~- 233 (464)
T KOG0284|consen 169 MNNV---------KIIQAHHAEAIRDLAFSPNDSKFLTC---SDDGTIKIWDFRM--PKEERVLRGHGWDVKSVDWHPT- 233 (464)
T ss_pred hhhh---------HHhhHhhhhhhheeccCCCCceeEEe---cCCCeEEEEeccC--CchhheeccCCCCcceeccCCc-
Confidence 5421 1244444 5665 489999999998 4999999999987 4555667999999999999999
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc-------
Q 000055 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI------- 2449 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi------- 2449 (2548)
..++++||.|..|++|| ..+|.|+.+++.. . .....+.|++++.+ .++.|..++++|+
T Consensus 234 ------kgLiasgskDnlVKlWD---prSg~cl~tlh~H---K-ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~ 300 (464)
T KOG0284|consen 234 ------KGLIASGSKDNLVKLWD---PRSGSCLATLHGH---K-NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF 300 (464)
T ss_pred ------cceeEEccCCceeEeec---CCCcchhhhhhhc---c-ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH
Confidence 56999999999999999 6789988776321 1 22356789999988 6778888999996
Q ss_pred -ccCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-
Q 000055 2450 -PKAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG- 2526 (2548)
Q Consensus 2450 -~~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG- 2526 (2548)
+++|+..|++++|+| ...+|.+|+.||.|..|.+...+++..++ .+|.+ .|++++|+|-|
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-------------~AHd~----~iwsl~~hPlGh 363 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-------------PAHDG----EIWSLAYHPLGH 363 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC-------------ccccc----ceeeeeccccce
Confidence 468999999999999 67899999999999999998767766553 45664 45778999999
Q ss_pred -EEEEECCCcEEEEECC
Q 000055 2527 -FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2527 -LaSGS~DGtIrIWDL~ 2542 (2548)
|++|+.|.++|+|.-.
T Consensus 364 il~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 364 ILATGSNDRTVRFWTRN 380 (464)
T ss_pred eEeecCCCcceeeeccC
Confidence 8899999999999753
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.91 E-value=9.8e-22 Score=239.05 Aligned_cols=292 Identities=14% Similarity=0.182 Sum_probs=224.6
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000055 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
+++.|. |.|+.|+|||.++++.+.||.|.+||-.+|+.+..+.. ...|.+.|.++.|+||+..++|++.|.
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~-------~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED-------SDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC-------CCCccccEEEEEECCCCceEEEecCCc
Confidence 344444 89999999999999999999999999999999988864 345779999999999999999999999
Q ss_pred cEEEEEcCCCcccccccC-----------------------------------ccceeccCCcccEEE--EcCCCCEEEE
Q 000055 2294 TVCTWQLEVGGRSNVRPM-----------------------------------ESCLCFSSHAMDVSY--ITSSGSVIAA 2336 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~-----------------------------------~s~~t~~gH~~~V~a--fSpdGslLAT 2336 (2548)
++++||+.+.+.+...+. ...+.+.||...|.+ .++++++|++
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S 337 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS 337 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe
Confidence 999999987753322111 234456789998886 7899999999
Q ss_pred EeccCCCCeEEEEECCCCCCCc-ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc--cccCc----
Q 000055 2337 AGHSSNGINVVVWDTLAPPTSS-RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY--IATGK---- 2409 (2548)
Q Consensus 2337 gG~SS~DGtVrIWDl~t~~~k~-v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~--l~TGk---- 2409 (2548)
|. .||.|.-||...+ .. ...-++|...|.+++.+..+ .+++.|.|.++++.++.. .....
T Consensus 338 gs---yDG~I~~W~~~~g--~~~~~~g~~h~nqI~~~~~~~~~--------~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l 404 (603)
T KOG0318|consen 338 GS---YDGHINSWDSGSG--TSDRLAGKGHTNQIKGMAASESG--------ELFTIGWDDTLRVISLKDNGYTKSEVVKL 404 (603)
T ss_pred ec---cCceEEEEecCCc--cccccccccccceEEEEeecCCC--------cEEEEecCCeEEEEecccCcccccceeec
Confidence 84 8999999999763 32 22236799999999977643 888999999999998631 00000
Q ss_pred -----eeee-----------------ecCC----CCCCCccccccccCCCCCC--ccCCCCCceEEEc----------cc
Q 000055 2410 -----TKKH-----------------KHSD----RGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI----------PK 2451 (2548)
Q Consensus 2410 -----~l~t-----------------l~~~----~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi----------~~ 2451 (2548)
.+.. +... ...-......++++|++.. +++.|++++++.+ ..
T Consensus 405 g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~ 484 (603)
T KOG0318|consen 405 GSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL 484 (603)
T ss_pred CCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee
Confidence 0000 0000 0111233456788999888 8888999999874 24
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEE
Q 000055 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS 2529 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS 2529 (2548)
.|.++|++++++||+.|||+|...+.|.+||+.+++..... ..-|.. -|.+++|+|+. +||
T Consensus 485 ~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~-------------w~FHta----kI~~~aWsP~n~~vAT 547 (603)
T KOG0318|consen 485 EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR-------------WAFHTA----KINCVAWSPNNKLVAT 547 (603)
T ss_pred cccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce-------------eeeeee----eEEEEEeCCCceEEEe
Confidence 69999999999999999999999999999999988773211 122553 45677999999 899
Q ss_pred EECCCcEEEEECCCC
Q 000055 2530 CGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2530 GS~DGtIrIWDL~sg 2544 (2548)
||-|.+|.||+++..
T Consensus 548 GSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 548 GSLDTNVIIYSVKKP 562 (603)
T ss_pred ccccceEEEEEccCh
Confidence 999999999999764
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=3.2e-22 Score=250.18 Aligned_cols=251 Identities=20% Similarity=0.299 Sum_probs=201.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++++|||.++|||+.||.|+|||...|-+..+|.. |+..|+.+.|+..|+.+++++-||+|+.||+.
T Consensus 353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte----------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE----------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc----------CCCceEEEEEEecCCEEEEeecCCeEEeeeec
Confidence 59999999999999999999999999999999999865 66999999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcc---cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAM---DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~---~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
....- +++..... ...+..|.|.++++|+ -+.-.|.+|++.+ ++.+..+.||.++|.+++|+|.
T Consensus 423 RYrNf--------RTft~P~p~QfscvavD~sGelV~AG~--~d~F~IfvWS~qT--GqllDiLsGHEgPVs~l~f~~~- 489 (893)
T KOG0291|consen 423 RYRNF--------RTFTSPEPIQFSCVAVDPSGELVCAGA--QDSFEIFVWSVQT--GQLLDILSGHEGPVSGLSFSPD- 489 (893)
T ss_pred cccee--------eeecCCCceeeeEEEEcCCCCEEEeec--cceEEEEEEEeec--CeeeehhcCCCCcceeeEEccc-
Confidence 66432 22332221 2234778899998886 2445799999987 7889999999999999999999
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE
Q 000055 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT 2458 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt 2458 (2548)
++.|++|+.|.+||+||+ ..+.....++ .+...|.
T Consensus 490 ------~~~LaS~SWDkTVRiW~i--f~s~~~vEtl-------------------------------------~i~sdvl 524 (893)
T KOG0291|consen 490 ------GSLLASGSWDKTVRIWDI--FSSSGTVETL-------------------------------------EIRSDVL 524 (893)
T ss_pred ------cCeEEeccccceEEEEEe--eccCceeeeE-------------------------------------eecccee
Confidence 789999999999999996 2332333332 3567899
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCcee-------ecEEEEEEcCCe--EEE
Q 000055 2459 RISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVR-------AGVTDIQVVSRG--FLS 2529 (2548)
Q Consensus 2459 sLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~-------a~VtsLafSPdG--LaS 2529 (2548)
.++|+|+|+-|+++.-||.|.+||...+..+.++.+.+.-.. -+...+.+. -..+.+++++|| |++
T Consensus 525 ~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~-----gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlA 599 (893)
T KOG0291|consen 525 AVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSG-----GRKETDRITAENSAKGKTFTTICYSADGKCILA 599 (893)
T ss_pred EEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccc-----cccccceeehhhcccCCceEEEEEcCCCCEEEe
Confidence 999999999999999999999999998888776643221100 011111111 237889999999 889
Q ss_pred EECCCcEEEEECCCCc
Q 000055 2530 CGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2530 GS~DGtIrIWDL~sg~ 2545 (2548)
||....|.+|+++++.
T Consensus 600 gG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 600 GGESNSICIYDVPEGV 615 (893)
T ss_pred cCCcccEEEEECchhh
Confidence 9999999999999874
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.91 E-value=3.1e-22 Score=235.96 Aligned_cols=276 Identities=17% Similarity=0.298 Sum_probs=218.7
Q ss_pred CccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000055 2215 ATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.++..|+ +.+++.||+.++++||+.|....||+..+|.....+. +|.+.|+++.|+.+|.+||||+.+
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt----------gHKDSVt~~~FshdgtlLATGdms 127 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT----------GHKDSVTCCSFSHDGTLLATGDMS 127 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec----------CCCCceEEEEEccCceEEEecCCC
Confidence 3455555 7899999999999999999999999999999666653 467999999999999999999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000055 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
|.|+||+..++..... +.....++. +|+|-+.+++.|. .||.+-+|.+.. ....+.+.||+.+++
T Consensus 128 G~v~v~~~stg~~~~~--------~~~e~~dieWl~WHp~a~illAG~---~DGsvWmw~ip~--~~~~kv~~Gh~~~ct 194 (399)
T KOG0296|consen 128 GKVLVFKVSTGGEQWK--------LDQEVEDIEWLKWHPRAHILLAGS---TDGSVWMWQIPS--QALCKVMSGHNSPCT 194 (399)
T ss_pred ccEEEEEcccCceEEE--------eecccCceEEEEecccccEEEeec---CCCcEEEEECCC--cceeeEecCCCCCcc
Confidence 9999999998853221 223344554 4889888888874 999999999965 467788999999999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC-----------------------------
Q 000055 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS----------------------------- 2421 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s----------------------------- 2421 (2548)
+=.|.|+ |+.+++|..||+|++|| ++++..+..........
T Consensus 195 ~G~f~pd-------GKr~~tgy~dgti~~Wn---~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 195 CGEFIPD-------GKRILTGYDDGTIIVWN---PKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred cccccCC-------CceEEEEecCceEEEEe---cCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcccc
Confidence 9999999 89999999999999999 66776665542110000
Q ss_pred ------------------Ccccccc---ccCCCCCC--ccCCCCCceEEEcc-------cCCCCCEEEEEEeCCCCEEEE
Q 000055 2422 ------------------SINTCAH---ADAQTGSG--SKPGDQNGMLWYIP-------KAHLGSVTRISTVPNTSLFLT 2471 (2548)
Q Consensus 2422 ------------------~~~~~~v---afSpdGk~--v~s~D~sv~Iwdi~-------~gH~~~VtsLafSPdG~~LaS 2471 (2548)
.....++ .++..=.+ .+..|+++.|||.. -.|+.+|+.+.|.+ ..+|++
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t 343 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLT 343 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchhee
Confidence 0000001 11111111 56678889999953 25899999999998 889999
Q ss_pred EeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECC
Q 000055 2472 GSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2472 GS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
++.||.|++||.++|+++.++ .||. ..|.+++++|++ ++|+|.|++.+||+++
T Consensus 344 ~c~~g~v~~wDaRtG~l~~~y--------------~GH~----~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 344 ACANGKVRQWDARTGQLKFTY--------------TGHQ----MGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eccCceEEeeeccccceEEEE--------------ecCc----hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999988 7887 456788999999 8899999999999976
No 25
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.4e-23 Score=255.47 Aligned_cols=238 Identities=15% Similarity=0.288 Sum_probs=210.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.++.+||..++++++-.+|.|.|||.++...++.+.... -+|++..|-+..+.+++|+.|..|++|+.+
T Consensus 16 VKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~----------~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE----------VPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred eeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc----------cchhhheeeeccceEEEecCCceEEEEecc
Confidence 7999999999999999999999999999999999886522 679999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+++++. .|..|.+.|.+ .+|...+++++ |+|.+|++||... ...+.+++.||+..|.+++|+|.+
T Consensus 86 t~ekV~--------~FeAH~DyIR~iavHPt~P~vLts---SDDm~iKlW~we~-~wa~~qtfeGH~HyVMqv~fnPkD- 152 (794)
T KOG0276|consen 86 TGEKVK--------TFEAHSDYIRSIAVHPTLPYVLTS---SDDMTIKLWDWEN-EWACEQTFEGHEHYVMQVAFNPKD- 152 (794)
T ss_pred cceeeE--------EeeccccceeeeeecCCCCeEEec---CCccEEEEeeccC-ceeeeeEEcCcceEEEEEEecCCC-
Confidence 987543 48899998876 78999999998 4999999999985 377899999999999999999998
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000055 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
.+.++|++-|++|++|.+ .+..+..++ ++|+..|+|
T Consensus 153 -----~ntFaS~sLDrTVKVWsl---gs~~~nfTl------------------------------------~gHekGVN~ 188 (794)
T KOG0276|consen 153 -----PNTFASASLDRTVKVWSL---GSPHPNFTL------------------------------------EGHEKGVNC 188 (794)
T ss_pred -----ccceeeeeccccEEEEEc---CCCCCceee------------------------------------eccccCcce
Confidence 889999999999999994 344444444 899999999
Q ss_pred EEEeCCC--CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCc
Q 000055 2460 ISTVPNT--SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGS 2535 (2548)
Q Consensus 2460 LafSPdG--~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGt 2535 (2548)
+.+-+.| .+|+||++|.+|+|||.++.++++++ .||...|.. +.|+|.- ++|||.||+
T Consensus 189 Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL--------------eGHt~Nvs~----v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 189 VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL--------------EGHTNNVSF----VFFHPELPIIISGSEDGT 250 (794)
T ss_pred EEeccCCCcceEEecCCCceEEEeecchHHHHHHh--------------hcccccceE----EEecCCCcEEEEecCCcc
Confidence 9998855 79999999999999999999999876 788876644 4799988 889999999
Q ss_pred EEEEECCCC
Q 000055 2536 VKLIQLEDY 2544 (2548)
Q Consensus 2536 IrIWDL~sg 2544 (2548)
||||.-.+-
T Consensus 251 vriWhs~Ty 259 (794)
T KOG0276|consen 251 VRIWNSKTY 259 (794)
T ss_pred EEEecCcce
Confidence 999997654
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=2.4e-22 Score=259.30 Aligned_cols=243 Identities=21% Similarity=0.320 Sum_probs=200.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.|+|+|+++++++.|+.+++|+..+++. ..... ..+|...|++++|+|++.++++|+.|++|++||+.
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~-------l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRE-------LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhcc-------ccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 68899999999999999999999999976663 11111 13467999999999999999999999999999994
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
... ...+++.+|...|.+ |+|+|+++++|+ .|++|+|||+++ ++++..+.+|.+.|++++|.++
T Consensus 234 ~~~-------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs---~D~tvriWd~~~--~~~~~~l~~hs~~is~~~f~~d-- 299 (456)
T KOG0266|consen 234 DDG-------RNLKTLKGHSTYVTSVAFSPDGNLLVSGS---DDGTVRIWDVRT--GECVRKLKGHSDGISGLAFSPD-- 299 (456)
T ss_pred CCC-------eEEEEecCCCCceEEEEecCCCCEEEEec---CCCcEEEEeccC--CeEEEeeeccCCceEEEEECCC--
Confidence 332 134568899999975 999999999986 999999999987 7899999999999999999999
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCc--eeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC--
Q 000055 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGK--TKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG-- 2455 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk--~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~-- 2455 (2548)
+.+|++++.||.|++|| ..++. +...+ .+++.
T Consensus 300 -----~~~l~s~s~d~~i~vwd---~~~~~~~~~~~~------------------------------------~~~~~~~ 335 (456)
T KOG0266|consen 300 -----GNLLVSASYDGTIRVWD---LETGSKLCLKLL------------------------------------SGAENSA 335 (456)
T ss_pred -----CCEEEEcCCCccEEEEE---CCCCceeeeecc------------------------------------cCCCCCC
Confidence 78999999999999999 44555 33333 33333
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC
Q 000055 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD 2533 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D 2533 (2548)
+++++.|+|++.++++++.|+++++||+..+..+..+ .+|...+ ..+.+...++.| +++|+.|
T Consensus 336 ~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~--------------~~~~~~~-~~~~~~~~~~~~~~i~sg~~d 400 (456)
T KOG0266|consen 336 PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY--------------TGHSNLV-RCIFSPTLSTGGKLIYSGSED 400 (456)
T ss_pred ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee--------------cccCCcc-eeEecccccCCCCeEEEEeCC
Confidence 5999999999999999999999999999999998877 4555433 233444556777 8899999
Q ss_pred CcEEEEECCCCc
Q 000055 2534 GSVKLIQLEDYQ 2545 (2548)
Q Consensus 2534 GtIrIWDL~sg~ 2545 (2548)
+.|++|++.++.
T Consensus 401 ~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 401 GSVYVWDSSSGG 412 (456)
T ss_pred ceEEEEeCCccc
Confidence 999999998753
No 27
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=7.4e-23 Score=240.91 Aligned_cols=246 Identities=19% Similarity=0.269 Sum_probs=208.2
Q ss_pred CccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCC-ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000055 2215 ATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD-KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg-~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
+.+.||+ +..++|+..|+++++++.|-.+.+||.++. ++++.. .+|...|.++.|-|.|+++++++.
T Consensus 144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~----------~gh~h~vS~V~f~P~gd~ilS~sr 213 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL----------IGHEHGVSSVFFLPLGDHILSCSR 213 (406)
T ss_pred hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh----------cCcccceeeEEEEecCCeeeeccc
Confidence 3455555 799999999999999999999999998863 333332 235588999999999999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000055 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
|.+|+.|++.+|-++ +++.+|...|.. .+.||.++|+++ .|.+|++|-+.+ .++...++.|+..|
T Consensus 214 D~tik~We~~tg~cv--------~t~~~h~ewvr~v~v~~DGti~As~s---~dqtl~vW~~~t--~~~k~~lR~hEh~v 280 (406)
T KOG0295|consen 214 DNTIKAWECDTGYCV--------KTFPGHSEWVRMVRVNQDGTIIASCS---NDQTLRVWVVAT--KQCKAELREHEHPV 280 (406)
T ss_pred ccceeEEecccceeE--------EeccCchHhEEEEEecCCeeEEEecC---CCceEEEEEecc--chhhhhhhccccce
Confidence 999999999998654 358899887764 677899999985 999999999986 67888899999999
Q ss_pred EEEEEccCCCC--------CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCC
Q 000055 2370 RSISVFDNDLG--------SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGD 2441 (2548)
Q Consensus 2370 tSLafsP~dlg--------~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D 2441 (2548)
-+++|.|..-. ....++++.+|+.|++|++|| +.+|+++.++
T Consensus 281 Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd---v~tg~cL~tL--------------------------- 330 (406)
T KOG0295|consen 281 ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD---VSTGMCLFTL--------------------------- 330 (406)
T ss_pred EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe---ccCCeEEEEE---------------------------
Confidence 99999886311 111246999999999999999 7889999998
Q ss_pred CCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEE
Q 000055 2442 QNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2442 ~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa 2521 (2548)
.+|..+|..++|+|.|+||+++.+|++++|||+++++++++++ .|.. .|++++
T Consensus 331 ---------~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--------------ah~h----fvt~lD 383 (406)
T KOG0295|consen 331 ---------VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE--------------AHEH----FVTSLD 383 (406)
T ss_pred ---------ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC--------------CCcc----eeEEEe
Confidence 8899999999999999999999999999999999999999883 3332 367889
Q ss_pred EcCCe--EEEEECCCcEEEEE
Q 000055 2522 VVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2522 fSPdG--LaSGS~DGtIrIWD 2540 (2548)
|+.+. ++||+-|.++++|.
T Consensus 384 fh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cCCCCceEEeccccceeeeee
Confidence 98888 88999999999996
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=7.5e-24 Score=245.92 Aligned_cols=237 Identities=19% Similarity=0.313 Sum_probs=198.6
Q ss_pred CCccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000055 2214 PATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2214 ~~tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
..+..++ .|+.+ |...+++|..|++|+|||..+-.+...+ .+|++.|.|+.|. .+.+++|+.|.
T Consensus 194 Se~skgV--YClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L----------~GHtGSVLCLqyd--~rviisGSSDs 257 (499)
T KOG0281|consen 194 SENSKGV--YCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKIL----------TGHTGSVLCLQYD--ERVIVSGSSDS 257 (499)
T ss_pred cccCCce--EEEEe--cchhhhcccccCceEEeccccHHHHHhh----------hcCCCcEEeeecc--ceEEEecCCCc
Confidence 3345554 78885 5677999999999999998887766654 3467999999996 56899999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCC-CcceeeeccCCCeEEE
Q 000055 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPT-SSRASITCHEGGARSI 2372 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~-k~v~sl~gHs~~VtSL 2372 (2548)
+|++||+++|+.++ ++-+|...|.-+.-+..+++++ |.|.++.+||+..+.. .+.+.+.||...|+.+
T Consensus 258 TvrvWDv~tge~l~--------tlihHceaVLhlrf~ng~mvtc---SkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV 326 (499)
T KOG0281|consen 258 TVRVWDVNTGEPLN--------TLIHHCEAVLHLRFSNGYMVTC---SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 326 (499)
T ss_pred eEEEEeccCCchhh--------HHhhhcceeEEEEEeCCEEEEe---cCCceeEEEeccCchHHHHHHHHhhhhhheeee
Confidence 99999999997544 3678888887654456788887 4999999999987532 2457788999999999
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000055 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
.|... ++++++.|.+|++|+ +.++++++++ .+
T Consensus 327 dfd~k---------yIVsASgDRTikvW~---~st~efvRtl------------------------------------~g 358 (499)
T KOG0281|consen 327 DFDDK---------YIVSASGDRTIKVWS---TSTCEFVRTL------------------------------------NG 358 (499)
T ss_pred ccccc---------eEEEecCCceEEEEe---ccceeeehhh------------------------------------hc
Confidence 98755 999999999999999 7788888887 78
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEEC
Q 000055 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGG 2532 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~ 2532 (2548)
|...|-|+.+ .|+++++||.|.+|++||+..|.++..+ .||..-| .++.|....+++|+.
T Consensus 359 HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL--------------eGHEeLv----RciRFd~krIVSGaY 418 (499)
T KOG0281|consen 359 HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL--------------EGHEELV----RCIRFDNKRIVSGAY 418 (499)
T ss_pred ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHH--------------hchHHhh----hheeecCceeeeccc
Confidence 9999999988 7899999999999999999999998755 7888544 566998888999999
Q ss_pred CCcEEEEECCCCc
Q 000055 2533 DGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2533 DGtIrIWDL~sg~ 2545 (2548)
||+||+||+..+.
T Consensus 419 DGkikvWdl~aal 431 (499)
T KOG0281|consen 419 DGKIKVWDLQAAL 431 (499)
T ss_pred cceEEEEeccccc
Confidence 9999999998753
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.90 E-value=3.9e-23 Score=262.20 Aligned_cols=200 Identities=25% Similarity=0.400 Sum_probs=180.4
Q ss_pred cCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc
Q 000055 2217 VENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2548)
Q Consensus 2217 l~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt 2294 (2548)
+-||. |...+|+|+.++|++++.|++||+|.+.+..++..|++ |..+|++++|+|.|-+||||+.|++
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G----------H~~PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG----------HLAPVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecC----------CCcceeeEEecCCceEEEecCCCce
Confidence 44444 78999999999999999999999999999999888853 6699999999999999999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000055 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
.++|...... +...+.+|-++|.| |+|+++++++|+ .|++|++||+.+ +..++.|.||.++|.++
T Consensus 517 ArLWs~d~~~--------PlRifaghlsDV~cv~FHPNs~Y~aTGS---sD~tVRlWDv~~--G~~VRiF~GH~~~V~al 583 (707)
T KOG0263|consen 517 ARLWSTDHNK--------PLRIFAGHLSDVDCVSFHPNSNYVATGS---SDRTVRLWDVST--GNSVRIFTGHKGPVTAL 583 (707)
T ss_pred eeeeecccCC--------chhhhcccccccceEEECCcccccccCC---CCceEEEEEcCC--CcEEEEecCCCCceEEE
Confidence 9999988643 23458899988865 999999999984 999999999987 78899999999999999
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000055 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
+|+|. |.+|++|+.||.|++|| +.+|+.+..+ .+
T Consensus 584 ~~Sp~-------Gr~LaSg~ed~~I~iWD---l~~~~~v~~l------------------------------------~~ 617 (707)
T KOG0263|consen 584 AFSPC-------GRYLASGDEDGLIKIWD---LANGSLVKQL------------------------------------KG 617 (707)
T ss_pred EEcCC-------CceEeecccCCcEEEEE---cCCCcchhhh------------------------------------hc
Confidence 99998 89999999999999999 5667776665 78
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000055 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
|.+.|.++.|+.+|..||+||.|.+|++||+..
T Consensus 618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 618 HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999999999999874
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.6e-22 Score=226.22 Aligned_cols=282 Identities=17% Similarity=0.249 Sum_probs=215.9
Q ss_pred EEEEEEcCC-CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000055 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+..++|||. |..||+++.|..||+|+...+....+...+. .+|...|++++|+|.|++|++|+.|.++.||.-
T Consensus 17 ~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld------~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 17 VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD------DGHKRSVRSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc------ccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence 799999998 8999999999999999988644433332222 357899999999999999999999999999987
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCC-CCCcceeeeccCCCeEEEEEccC
Q 000055 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAP-PTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~-~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
..+. ++...++.||.+.|-+ |+++|++||+++ .|+.|-||.+... ...+...++.|+..|..+.|+|.
T Consensus 91 ~~~e------fecv~~lEGHEnEVK~Vaws~sG~~LATCS---RDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 91 EDGE------FECVATLEGHENEVKCVAWSASGNYLATCS---RDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred CCCc------eeEEeeeeccccceeEEEEcCCCCEEEEee---CCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 6543 3345668999998875 999999999995 9999999998732 24578899999999999999997
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc----cc
Q 000055 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI----PK 2451 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi----~~ 2451 (2548)
..+|++++.|.+|++|+-..-..-.+.+++. .+.. ..-.++|.+.|.. .++.|++++||.. ..
T Consensus 162 -------~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~---g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~ 230 (312)
T KOG0645|consen 162 -------EDLLFSCSYDNTIKVYRDEDDDDWECVQTLD---GHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSG 230 (312)
T ss_pred -------cceeEEeccCCeEEEEeecCCCCeeEEEEec---Cccc-eEEEEEecCCCceEEEecCCcceEeeeeccCcch
Confidence 5699999999999999842122334566652 1111 2345678888855 7788889999983 34
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EE
Q 000055 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FL 2528 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---La 2528 (2548)
.|...++.++|. ...++|++.|+.|+++.-..+-.-..++ ++...-..|+.. |.+++|.|.+ |+
T Consensus 231 ~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~-------l~~~~~~aHe~d----VNsV~w~p~~~~~L~ 297 (312)
T KOG0645|consen 231 MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWN-------LLAKKEGAHEVD----VNSVQWNPKVSNRLA 297 (312)
T ss_pred hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHH-------HHHhhhcccccc----cceEEEcCCCCCcee
Confidence 588899999997 6689999999999999866421111110 011112456654 4667999953 99
Q ss_pred EEECCCcEEEEECC
Q 000055 2529 SCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2529 SGS~DGtIrIWDL~ 2542 (2548)
+||+||.|++|.+.
T Consensus 298 s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 298 SGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCceEEEEEec
Confidence 99999999999975
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=1.9e-23 Score=242.67 Aligned_cols=249 Identities=16% Similarity=0.252 Sum_probs=203.7
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000055 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
...+.||+ |.|+.| +.+.+++|+.|.+|+|||+++|+++.++- +|.+.|..+.|+ +.+++|++.
T Consensus 230 ~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tli----------hHceaVLhlrf~--ng~mvtcSk 295 (499)
T KOG0281|consen 230 LKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLI----------HHCEAVLHLRFS--NGYMVTCSK 295 (499)
T ss_pred HHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHh----------hhcceeEEEEEe--CCEEEEecC
Confidence 44555665 788886 45699999999999999999999988863 367999999997 678999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000055 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
|.++.+||+.....+. ....+.||...|..+.-+.++|++++ .|++|++|++.+ ..+++++.+|..+|.|
T Consensus 296 DrsiaVWdm~sps~it-----~rrVLvGHrAaVNvVdfd~kyIVsAS---gDRTikvW~~st--~efvRtl~gHkRGIAC 365 (499)
T KOG0281|consen 296 DRSIAVWDMASPTDIT-----LRRVLVGHRAAVNVVDFDDKYIVSAS---GDRTIKVWSTST--CEFVRTLNGHKRGIAC 365 (499)
T ss_pred CceeEEEeccCchHHH-----HHHHHhhhhhheeeeccccceEEEec---CCceEEEEeccc--eeeehhhhccccccee
Confidence 9999999998664332 23457899999988777889999984 899999999987 7899999999999999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000055 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
+.+. +.++++|+.|.+|++|| +..|.+++.+ +
T Consensus 366 lQYr---------~rlvVSGSSDntIRlwd---i~~G~cLRvL------------------------------------e 397 (499)
T KOG0281|consen 366 LQYR---------DRLVVSGSSDNTIRLWD---IECGACLRVL------------------------------------E 397 (499)
T ss_pred hhcc---------CeEEEecCCCceEEEEe---ccccHHHHHH------------------------------------h
Confidence 9975 45999999999999999 6788888887 8
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEE
Q 000055 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCG 2531 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS 2531 (2548)
||+.-|.++.| +.+.+++|+.||+|+|||+.++..-.... .++-..++..|++. |..+.|..-.+++++
T Consensus 398 GHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~-----~~~Cl~~lv~hsgR----VFrLQFD~fqIvsss 466 (499)
T KOG0281|consen 398 GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPA-----STLCLRTLVEHSGR----VFRLQFDEFQIISSS 466 (499)
T ss_pred chHHhhhheee--cCceeeeccccceEEEEecccccCCcccc-----cchHHHhhhhccce----eEEEeecceEEEecc
Confidence 99999999999 67899999999999999998764322110 01111123456554 467789887799999
Q ss_pred CCCcEEEEECCCCc
Q 000055 2532 GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2532 ~DGtIrIWDL~sg~ 2545 (2548)
.|.+|-|||+.++.
T Consensus 467 HddtILiWdFl~~~ 480 (499)
T KOG0281|consen 467 HDDTILIWDFLNGP 480 (499)
T ss_pred CCCeEEEEEcCCCC
Confidence 99999999998764
No 32
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.89 E-value=3.5e-22 Score=230.06 Aligned_cols=232 Identities=16% Similarity=0.259 Sum_probs=195.3
Q ss_pred CCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCC--c-eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc
Q 000055 2218 ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKD--K-ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2548)
Q Consensus 2218 ~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg--~-~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt 2294 (2548)
...-|...+|+|.|+++|.|+-|+...||++.+. + .+..-+. ..+|.+-+.++.|-+|+ .|+|++.|.+
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~-------l~gHtgylScC~f~dD~-~ilT~SGD~T 167 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRE-------LAGHTGYLSCCRFLDDN-HILTGSGDMT 167 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeee-------ecCccceeEEEEEcCCC-ceEecCCCce
Confidence 3334789999999999999999999999999854 2 1222222 34567999999998855 5999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000055 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
..+||+++++.. +.+.+|..+|.+ ++| +++.+++|+ -|+..++||++. +.+++.|.+|+..|++
T Consensus 168 CalWDie~g~~~--------~~f~GH~gDV~slsl~p~~~ntFvSg~---cD~~aklWD~R~--~~c~qtF~ghesDINs 234 (343)
T KOG0286|consen 168 CALWDIETGQQT--------QVFHGHTGDVMSLSLSPSDGNTFVSGG---CDKSAKLWDVRS--GQCVQTFEGHESDINS 234 (343)
T ss_pred EEEEEcccceEE--------EEecCCcccEEEEecCCCCCCeEEecc---cccceeeeeccC--cceeEeecccccccce
Confidence 999999999744 348899999986 778 899999997 799999999997 6899999999999999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc
Q 000055 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI 2449 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi 2449 (2548)
|.|+|+ |.-+++|+.|++.|+||+| ..+.+..+. ..........++|+..|++ .+..|.++.+||.
T Consensus 235 v~ffP~-------G~afatGSDD~tcRlyDlR---aD~~~a~ys--~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 235 VRFFPS-------GDAFATGSDDATCRLYDLR---ADQELAVYS--HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred EEEccC-------CCeeeecCCCceeEEEeec---CCcEEeeec--cCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 999999 7899999999999999976 344555542 2233445677899999998 6788899999996
Q ss_pred c--------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000055 2450 P--------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWD 2482 (2548)
Q Consensus 2450 ~--------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWD 2482 (2548)
+ .||++.|+|+..+|||.-++|||.|.++|||.
T Consensus 303 lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 303 LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 4 58999999999999999999999999999994
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=3.8e-22 Score=250.15 Aligned_cols=298 Identities=16% Similarity=0.248 Sum_probs=222.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCC---------C--------------------------C
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN---------V--------------------------P 2266 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs---------~--------------------------~ 2266 (2548)
+..++|+|.|..+++|+.||.|+|||+..+.+...+++++|-- . .
T Consensus 108 vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~ 187 (775)
T KOG0319|consen 108 VITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHT 187 (775)
T ss_pred eEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHH
Confidence 6889999999999999999999999999999999888754321 0 1
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccc--------------------------------------
Q 000055 2267 PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNV-------------------------------------- 2308 (2548)
Q Consensus 2267 ~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i-------------------------------------- 2308 (2548)
...|...|++++|.+|+..+++++.|..+.+||+.+-+....
T Consensus 188 ~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~ 267 (775)
T KOG0319|consen 188 MILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDS 267 (775)
T ss_pred HHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEec
Confidence 134677888888888887777777777777777532110000
Q ss_pred ----------cc----C---------------------------------------------------------------
Q 000055 2309 ----------RP----M--------------------------------------------------------------- 2311 (2548)
Q Consensus 2309 ----------~p----~--------------------------------------------------------------- 2311 (2548)
.+ .
T Consensus 268 es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~ 347 (775)
T KOG0319|consen 268 ESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPE 347 (775)
T ss_pred ccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCc
Confidence 00 0
Q ss_pred --------ccceeccCCcccEEEEc--CCCCEEEEEeccCCCCeEEEEECCCCC--CCcceeeeccCCCeEEEEEccCCC
Q 000055 2312 --------ESCLCFSSHAMDVSYIT--SSGSVIAAAGHSSNGINVVVWDTLAPP--TSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2312 --------~s~~t~~gH~~~V~afS--pdGslLATgG~SS~DGtVrIWDl~t~~--~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
..-+.+.||...|.++. .+|.+|++|+ .|+++++|.++... ..++....+|+..|.+|+++...
T Consensus 348 lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~s---KD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~- 423 (775)
T KOG0319|consen 348 LRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGS---KDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG- 423 (775)
T ss_pred eEEEecCCCceEEEeCchhheeeeeecccCcEEEEec---CCceEEEEEecCCcchhhhhhhhcccccccceeeecccC-
Confidence 00112345666666544 5677888885 99999999884321 23567778999999999996553
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee--cCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc------
Q 000055 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK--HSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI------ 2449 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl--~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi------ 2449 (2548)
..+++++|.|+++++|+++.-+.....-.+ ........-.+.+++++|+.++ .++.|.+.+||+.
T Consensus 424 -----asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~ 498 (775)
T KOG0319|consen 424 -----ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL 498 (775)
T ss_pred -----ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEE
Confidence 679999999999999998641111111011 0011112234567899999998 6788899999984
Q ss_pred --ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-
Q 000055 2450 --PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG- 2526 (2548)
Q Consensus 2450 --~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG- 2526 (2548)
+.||...|++|.|+|..+.++|+|.|++|+||.+.++.++++| .||. +.|..+.|-.+|
T Consensus 499 ~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~--------------eGH~----~aVlra~F~~~~~ 560 (775)
T KOG0319|consen 499 GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF--------------EGHT----SAVLRASFIRNGK 560 (775)
T ss_pred EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee--------------cCcc----ceeEeeeeeeCCc
Confidence 5799999999999999999999999999999999999999988 7887 455677898888
Q ss_pred -EEEEECCCcEEEEECCCCcc
Q 000055 2527 -FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2527 -LaSGS~DGtIrIWDL~sg~l 2546 (2548)
|+||++||-||+|++.++..
T Consensus 561 qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 561 QLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred EEEeccCCCcEEEEeccchhh
Confidence 99999999999999998753
No 34
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.89 E-value=9.4e-22 Score=227.50 Aligned_cols=271 Identities=22% Similarity=0.325 Sum_probs=210.4
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCC-ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000055 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD-KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg-~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
.-.+.+|. |.++.|+|+|.+||+|+.|..|.+|+.... +....+ .+|.++|..+.|.+|++.+++++
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l----------kgHsgAVM~l~~~~d~s~i~S~g 109 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL----------KGHSGAVMELHGMRDGSHILSCG 109 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee----------ccccceeEeeeeccCCCEEEEec
Confidence 33444554 799999999999999999999999996532 222332 24679999999999999999999
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCC
Q 000055 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGG 2368 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~ 2368 (2548)
.|++|+.||+++|++.. .+.+|..-|..+.|. |..++..+ |+|+++++||++. ..+++++. ..-.
T Consensus 110 tDk~v~~wD~~tG~~~r--------k~k~h~~~vNs~~p~rrg~~lv~Sg--sdD~t~kl~D~R~--k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 110 TDKTVRGWDAETGKRIR--------KHKGHTSFVNSLDPSRRGPQLVCSG--SDDGTLKLWDIRK--KEAIKTFE-NKYQ 176 (338)
T ss_pred CCceEEEEecccceeee--------hhccccceeeecCccccCCeEEEec--CCCceEEEEeecc--cchhhccc-ccee
Confidence 99999999999998653 277888877765553 44444444 6999999999996 55666663 3557
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceE
Q 000055 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGML 2446 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~I 2446 (2548)
++++.|... +..+.+|+-|+.|++||+|. .....++. + ....+..+..+++|.+ ..+.|.++++
T Consensus 177 ltAv~f~d~-------s~qv~sggIdn~ikvWd~r~---~d~~~~ls---G-h~DtIt~lsls~~gs~llsnsMd~tvrv 242 (338)
T KOG0265|consen 177 LTAVGFKDT-------SDQVISGGIDNDIKVWDLRK---NDGLYTLS---G-HADTITGLSLSRYGSFLLSNSMDNTVRV 242 (338)
T ss_pred EEEEEeccc-------ccceeeccccCceeeecccc---CcceEEee---c-ccCceeeEEeccCCCccccccccceEEE
Confidence 899999877 78999999999999999763 44444441 1 1223466788999888 5677889999
Q ss_pred EEcc------------cCCC----CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCC
Q 000055 2447 WYIP------------KAHL----GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFG 2510 (2548)
Q Consensus 2447 wdi~------------~gH~----~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~ 2510 (2548)
|++. .+|. .....++|+|+++.+..|+.|..+.+||..+...+..+ .||.
T Consensus 243 wd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl--------------pGh~ 308 (338)
T KOG0265|consen 243 WDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL--------------PGHY 308 (338)
T ss_pred EEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc--------------CCcc
Confidence 9953 2322 12356789999999999999999999999988888866 6887
Q ss_pred CceeecEEEEEEcCCe--EEEEECCCcEEEE
Q 000055 2511 GVVRAGVTDIQVVSRG--FLSCGGDGSVKLI 2539 (2548)
Q Consensus 2511 ~~V~a~VtsLafSPdG--LaSGS~DGtIrIW 2539 (2548)
+.| ..++|+|.. |.+|+.|.+|.+=
T Consensus 309 gsv----n~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 309 GSV----NEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred eeE----EEeeecCCCcEEEEeccCceeEee
Confidence 655 566999999 7899999999863
No 35
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.4e-22 Score=223.29 Aligned_cols=237 Identities=22% Similarity=0.289 Sum_probs=202.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
++++.|+-+|+|.++++.|.+|++|+...|..+++|.+ |...|.+++.+.|+..|++|+.|+.|.+||++
T Consensus 20 V~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg----------hG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG----------HGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred eEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC----------CCceeeeccccccccccccCCCCceEEEEEcc
Confidence 69999999999999999999999999999999999854 55789999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+|+... .+.+|...|.+ |+.+...+++|+ .|..+++||.+....++++.+..-.++|.++.....
T Consensus 90 TGkv~R--------r~rgH~aqVNtV~fNeesSVv~Sgs---fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h-- 156 (307)
T KOG0316|consen 90 TGKVDR--------RFRGHLAQVNTVRFNEESSVVASGS---FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH-- 156 (307)
T ss_pred cCeeee--------ecccccceeeEEEecCcceEEEecc---ccceeEEEEcccCCCCccchhhhhcCceeEEEeccc--
Confidence 997543 38899999975 888888888885 899999999998888899999988999999998655
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000055 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
.|++|+.||++|.||+|. |+... .-...+|++
T Consensus 157 -------eIvaGS~DGtvRtydiR~---G~l~s--------------------------------------Dy~g~pit~ 188 (307)
T KOG0316|consen 157 -------EIVAGSVDGTVRTYDIRK---GTLSS--------------------------------------DYFGHPITS 188 (307)
T ss_pred -------EEEeeccCCcEEEEEeec---ceeeh--------------------------------------hhcCCccee
Confidence 999999999999999773 32211 123458999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEE
Q 000055 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVK 2537 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIr 2537 (2548)
+.|+++++....++.|+++++-|-.+|++++.+ +||.+.-.- .++.+.... +++||.||.|.
T Consensus 189 vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY--------------kGhkn~eyk--ldc~l~qsdthV~sgSEDG~Vy 252 (307)
T KOG0316|consen 189 VSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY--------------KGHKNMEYK--LDCCLNQSDTHVFSGSEDGKVY 252 (307)
T ss_pred EEecCCCCEEEEeeccceeeecccchhHHHHHh--------------cccccceee--eeeeecccceeEEeccCCceEE
Confidence 999999999999999999999999999999877 566543311 233455444 88999999999
Q ss_pred EEECCCCc
Q 000055 2538 LIQLEDYQ 2545 (2548)
Q Consensus 2538 IWDL~sg~ 2545 (2548)
+||+.++.
T Consensus 253 ~wdLvd~~ 260 (307)
T KOG0316|consen 253 FWDLVDET 260 (307)
T ss_pred EEEeccce
Confidence 99998764
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.88 E-value=8.5e-21 Score=260.38 Aligned_cols=284 Identities=15% Similarity=0.157 Sum_probs=205.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEc
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl 2300 (2548)
|.+++|+|+|+++|+|+.|+.|+|||.............+ .....+...|.+++|++ ++.+|++++.||+|++||+
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYP---VVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccc---eEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 7999999999999999999999999976421000000000 00011236799999987 5789999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000055 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
.+++.. ..+.+|...|.+ |+| ++.+|++|+ .|++|++||++. +..+..+..+ ..|.++.|++.
T Consensus 563 ~~~~~~--------~~~~~H~~~V~~l~~~p~~~~~L~Sgs---~Dg~v~iWd~~~--~~~~~~~~~~-~~v~~v~~~~~ 628 (793)
T PLN00181 563 ARSQLV--------TEMKEHEKRVWSIDYSSADPTLLASGS---DDGSVKLWSINQ--GVSIGTIKTK-ANICCVQFPSE 628 (793)
T ss_pred CCCeEE--------EEecCCCCCEEEEEEcCCCCCEEEEEc---CCCEEEEEECCC--CcEEEEEecC-CCeEEEEEeCC
Confidence 876532 236788888875 775 788999986 899999999976 5666677654 68999999776
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCc-eeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc----
Q 000055 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGK-TKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP---- 2450 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk-~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~---- 2450 (2548)
+ +..+++|+.||.|++||++. ++ .+..+. .+. .....+.|. ++.. .++.|+.+++|++.
T Consensus 629 ~------g~~latgs~dg~I~iwD~~~---~~~~~~~~~---~h~-~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 629 S------GRSLAFGSADHKVYYYDLRN---PKLPLCTMI---GHS-KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred C------CCEEEEEeCCCeEEEEECCC---CCccceEec---CCC-CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcc
Confidence 4 78999999999999999763 22 222221 111 123345555 3443 66788999999853
Q ss_pred ----------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEE
Q 000055 2451 ----------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDI 2520 (2548)
Q Consensus 2451 ----------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsL 2520 (2548)
.+|...+.+++|+|++.+|++|+.||.|++|+......+..+...+..... .-....|. ..|.++
T Consensus 695 ~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~-~~~~~~~~----~~V~~v 769 (793)
T PLN00181 695 GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS-GLEVDDAS----QFISSV 769 (793)
T ss_pred ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc-ccccCCCC----cEEEEE
Confidence 368889999999999999999999999999998877666544211111000 00012232 346788
Q ss_pred EEcCCe--EEEEECCCcEEEEEC
Q 000055 2521 QVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2521 afSPdG--LaSGS~DGtIrIWDL 2541 (2548)
+|+|++ +++|+.||+|+||++
T Consensus 770 ~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 770 CWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcCCCCeEEEecCCCcEEEEec
Confidence 999999 899999999999996
No 37
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.3e-21 Score=228.75 Aligned_cols=276 Identities=12% Similarity=0.187 Sum_probs=211.9
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000055 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
.+..|+ |.-+.|+++|+|||+++.|.+..+|++.....+..+..+. +|..+|.-+.|+||.+++++|+.|.
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-------gh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-------GHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee-------cccCceEEEEECCCCCeEEecCchH
Confidence 344454 7999999999999999999999999988655544444333 3569999999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCccc--EEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc-CCCeE
Q 000055 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMD--VSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH-EGGAR 2370 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~--V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH-s~~Vt 2370 (2548)
.+++||+.+|......+ .++... .++|.|||..+++|+ .|+.+..||+.. ......++- ...|.
T Consensus 292 ~~~lwDv~tgd~~~~y~-------~~~~~S~~sc~W~pDg~~~V~Gs---~dr~i~~wdlDg---n~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYP-------SGLGFSVSSCAWCPDGFRFVTGS---PDRTIIMWDLDG---NILGNWEGVRDPKVH 358 (519)
T ss_pred heeeccCCcchhhhhcc-------cCcCCCcceeEEccCCceeEecC---CCCcEEEecCCc---chhhcccccccceeE
Confidence 99999999997543221 122333 345999999999985 899999999973 444444443 25699
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEE
Q 000055 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWY 2448 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwd 2448 (2548)
+++..++ |+.+++.+.|..|++++.. +....... ......+....+.||++ +...+..+.+||
T Consensus 359 dlait~D-------gk~vl~v~~d~~i~l~~~e---~~~dr~li-----se~~~its~~iS~d~k~~LvnL~~qei~LWD 423 (519)
T KOG0293|consen 359 DLAITYD-------GKYVLLVTVDKKIRLYNRE---ARVDRGLI-----SEEQPITSFSISKDGKLALVNLQDQEIHLWD 423 (519)
T ss_pred EEEEcCC-------CcEEEEEecccceeeechh---hhhhhccc-----cccCceeEEEEcCCCcEEEEEcccCeeEEee
Confidence 9999998 7889998999999999953 21111111 11223456678889998 778889999999
Q ss_pred c--------ccCCCCC--EEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000055 2449 I--------PKAHLGS--VTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2449 i--------~~gH~~~--VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
+ +.||... |..-+|.- +..++++||+|+.|+||+..+|+++.++ .||... |
T Consensus 424 l~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L--------------sGHs~~----v 485 (519)
T KOG0293|consen 424 LEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL--------------SGHSKT----V 485 (519)
T ss_pred cchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee--------------cCCcce----e
Confidence 6 3467654 33334543 4589999999999999999999999877 688754 4
Q ss_pred EEEEEcCCe---EEEEECCCcEEEEECCCC
Q 000055 2518 TDIQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2518 tsLafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
.+++|+|.. +||+|+||+||||.....
T Consensus 486 NcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 486 NCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred eEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 677999988 999999999999998765
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.5e-21 Score=239.90 Aligned_cols=238 Identities=18% Similarity=0.283 Sum_probs=201.0
Q ss_pred cCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000055 2217 VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2548)
Q Consensus 2217 l~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVr 2296 (2548)
+..+.+++..|-+..+++++|+.|..||||+.++++.++.|.. |.+-|++++.+|...+++|++.|-+|+
T Consensus 53 V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeA----------H~DyIR~iavHPt~P~vLtsSDDm~iK 122 (794)
T KOG0276|consen 53 VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEA----------HSDYIRSIAVHPTLPYVLTSSDDMTIK 122 (794)
T ss_pred ecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeec----------cccceeeeeecCCCCeEEecCCccEEE
Confidence 3444567777778889999999999999999999999999864 559999999999999999999999999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000055 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
+||++.+- ...+++.||...|.. |+| |.+.+|+++ -|++|++|.+.. ..+..++.+|..+|+||.
T Consensus 123 lW~we~~w-------a~~qtfeGH~HyVMqv~fnPkD~ntFaS~s---LDrTVKVWslgs--~~~nfTl~gHekGVN~Vd 190 (794)
T KOG0276|consen 123 LWDWENEW-------ACEQTFEGHEHYVMQVAFNPKDPNTFASAS---LDRTVKVWSLGS--PHPNFTLEGHEKGVNCVD 190 (794)
T ss_pred EeeccCce-------eeeeEEcCcceEEEEEEecCCCccceeeee---ccccEEEEEcCC--CCCceeeeccccCcceEE
Confidence 99998542 345679999998874 776 567999985 999999999976 567889999999999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000055 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
|-+.+ ..++|+||+.|.+|+||| .++..|++++ .||
T Consensus 191 yy~~g-----dkpylIsgaDD~tiKvWD---yQtk~CV~TL------------------------------------eGH 226 (794)
T KOG0276|consen 191 YYTGG-----DKPYLISGADDLTIKVWD---YQTKSCVQTL------------------------------------EGH 226 (794)
T ss_pred eccCC-----CcceEEecCCCceEEEee---cchHHHHHHh------------------------------------hcc
Confidence 98763 367999999999999999 7888998887 899
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEE
Q 000055 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCG 2531 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS 2531 (2548)
...|..+.|+|.-.+++|||+||++|||+..|-++..++. -| . ..|++|+-.+.+ ++.|.
T Consensus 227 t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn-------------~g-l----eRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 227 TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN-------------YG-L----ERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred cccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh-------------cC-C----ceEEEEeecCCCCeEEEec
Confidence 9999999999999999999999999999999888777662 11 1 235667776665 66777
Q ss_pred CCCcEEE
Q 000055 2532 GDGSVKL 2538 (2548)
Q Consensus 2532 ~DGtIrI 2538 (2548)
+.|.|.+
T Consensus 289 Deg~i~v 295 (794)
T KOG0276|consen 289 DEGSVTV 295 (794)
T ss_pred cCCcEEE
Confidence 6666643
No 39
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.87 E-value=5.1e-21 Score=226.50 Aligned_cols=260 Identities=20% Similarity=0.311 Sum_probs=206.6
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC---CCEEEEEeCCCcEEEEEcCCCcccc
Q 000055 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY---GHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd---G~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
++++++|+.||.+++||. .|+...++. +|.++|.+++|.-. ...|++++.|.++++|.++.+...
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~----------Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~- 182 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIV----------GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK- 182 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEe----------cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh-
Confidence 689999999999999995 456666653 36699999998543 346999999999999999877532
Q ss_pred cccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCC-----------------------CCCCcceee
Q 000055 2308 VRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLA-----------------------PPTSSRASI 2362 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t-----------------------~~~k~v~sl 2362 (2548)
....+...||...|-+ ..++|..+++| |.|.+|+||+..+ ....++..+
T Consensus 183 ---~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg---S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 183 ---VKALKVCRGHKRSVDSVSVDSSGTRFCSG---SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred ---hhHHhHhcccccceeEEEecCCCCeEEee---cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 1233445699998876 56889999998 4999999999221 012356678
Q ss_pred eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCC
Q 000055 2363 TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPG 2440 (2548)
Q Consensus 2363 ~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~ 2440 (2548)
.||.+.|.+|.|.+.. .+.+++.|.+|+.|| +.++.++..+. ......++..++..++ .++.
T Consensus 257 ~GHt~~Vs~V~w~d~~--------v~yS~SwDHTIk~WD---letg~~~~~~~-----~~ksl~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDAT--------VIYSVSWDHTIKVWD---LETGGLKSTLT-----TNKSLNCISYSPLSKLLASGSS 320 (423)
T ss_pred cccccceeeEEEcCCC--------ceEeecccceEEEEE---eecccceeeee-----cCcceeEeecccccceeeecCC
Confidence 8999999999999864 899999999999999 67787776652 2233456677777666 6677
Q ss_pred CCCceEEE-----------cccCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCc-EEEEecccccccccccCccc
Q 000055 2441 DQNGMLWY-----------IPKAHLGSVTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQ-LVYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2441 D~sv~Iwd-----------i~~gH~~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tge-ll~tL~~~Hs~hsfl~~tl~ 2507 (2548)
+..+++|| .+.+|.+.|.++.|+|. ...|++|+.|+++++||+++.+ +++.+ .
T Consensus 321 dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI--------------~ 386 (423)
T KOG0313|consen 321 DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI--------------A 386 (423)
T ss_pred CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee--------------c
Confidence 88899998 35689999999999995 5678999999999999999876 88877 6
Q ss_pred CCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECC
Q 000055 2508 GFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~ 2542 (2548)
+|.+.| .++.|...+ |+|||.|.+|+|+.-.
T Consensus 387 ~h~DKv----l~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 387 GHNDKV----LSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCceE----EEEeccCCceEEeccCcceEEEeccc
Confidence 787655 556999886 9999999999998754
No 40
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=4.6e-22 Score=228.98 Aligned_cols=276 Identities=14% Similarity=0.123 Sum_probs=221.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+-|..|+|||+||++|+.||-|.+||+.+|+..+.++-.... ....+.++|.|+.|+.|...+++|+.||.|++|.++
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd--~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD--NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc--ceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 678899999999999999999999999999876654321111 344567899999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+|.++... -..|...|++ |+.|+..+.+++ .|.+++|.-+.. ++++..++||++.|+...|.++
T Consensus 294 tG~ClRrF-------drAHtkGvt~l~FSrD~SqiLS~s---fD~tvRiHGlKS--GK~LKEfrGHsSyvn~a~ft~d-- 359 (508)
T KOG0275|consen 294 TGQCLRRF-------DRAHTKGVTCLSFSRDNSQILSAS---FDQTVRIHGLKS--GKCLKEFRGHSSYVNEATFTDD-- 359 (508)
T ss_pred cchHHHHh-------hhhhccCeeEEEEccCcchhhccc---ccceEEEecccc--chhHHHhcCccccccceEEcCC--
Confidence 99876431 3478888886 889999999985 899999999987 8999999999999999999998
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccccc--CCCCCCccCCCCCceEEEcc-------
Q 000055 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHAD--AQTGSGSKPGDQNGMLWYIP------- 2450 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vaf--SpdGk~v~s~D~sv~Iwdi~------- 2450 (2548)
|..+++++.||+|++|+ .++.+|+.+++..+ ........+.+ +|....++...++++|.++.
T Consensus 360 -----G~~iisaSsDgtvkvW~---~KtteC~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsf 430 (508)
T KOG0275|consen 360 -----GHHIISASSDGTVKVWH---GKTTECLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSF 430 (508)
T ss_pred -----CCeEEEecCCccEEEec---CcchhhhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeee
Confidence 88999999999999999 77889998874333 23233333333 33333377777777777642
Q ss_pred ---cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-
Q 000055 2451 ---KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG- 2526 (2548)
Q Consensus 2451 ---~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG- 2526 (2548)
+...+...+.+.+|.|.++++.++|+.++.|.+.+|++..+++ . |... |..++-+|..
T Consensus 431 sSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~-V-------------hEkd----vIGl~HHPHqN 492 (508)
T KOG0275|consen 431 SSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP-V-------------HEKD----VIGLTHHPHQN 492 (508)
T ss_pred ccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee-c-------------cccc----ccccccCcccc
Confidence 1234566778899999999999999999999999999988873 2 3221 2355778877
Q ss_pred -EEEEECCCcEEEEE
Q 000055 2527 -FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2527 -LaSGS~DGtIrIWD 2540 (2548)
+++-+.||.+++|.
T Consensus 493 llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 LLASYSEDGLLKLWK 507 (508)
T ss_pred hhhhhcccchhhhcC
Confidence 88999999999996
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=6.9e-21 Score=245.82 Aligned_cols=240 Identities=20% Similarity=0.378 Sum_probs=196.5
Q ss_pred cCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEc-CCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000055 2217 VENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEF-GKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2217 l~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl-~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
+.+|. |..++|+|++.++++|+.|++|+|||+ ..+..+.++++ |...|++++|+|+|+++++|+.|+
T Consensus 199 l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g----------H~~~v~~~~f~p~g~~i~Sgs~D~ 268 (456)
T KOG0266|consen 199 LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG----------HSTYVTSVAFSPDGNLLVSGSDDG 268 (456)
T ss_pred ccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC----------CCCceEEEEecCCCCEEEEecCCC
Confidence 34444 799999999999999999999999999 55677777643 669999999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCC-
Q 000055 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGG- 2368 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~- 2368 (2548)
+|++||++++++. ..+.+|...|. +|+++++++++++ .|+.|++||+.+ +. +...+.++...
T Consensus 269 tvriWd~~~~~~~--------~~l~~hs~~is~~~f~~d~~~l~s~s---~d~~i~vwd~~~--~~~~~~~~~~~~~~~~ 335 (456)
T KOG0266|consen 269 TVRIWDVRTGECV--------RKLKGHSDGISGLAFSPDGNLLVSAS---YDGTIRVWDLET--GSKLCLKLLSGAENSA 335 (456)
T ss_pred cEEEEeccCCeEE--------EeeeccCCceEEEEECCCCCEEEEcC---CCccEEEEECCC--CceeeeecccCCCCCC
Confidence 9999999987643 34788998887 4999999999985 899999999987 44 45667776655
Q ss_pred -eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000055 2369 -ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2369 -VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
++++.|+|+ +.++++++.|+.+++||+ ..+.+....
T Consensus 336 ~~~~~~fsp~-------~~~ll~~~~d~~~~~w~l---~~~~~~~~~--------------------------------- 372 (456)
T KOG0266|consen 336 PVTSVQFSPN-------GKYLLSASLDRTLKLWDL---RSGKSVGTY--------------------------------- 372 (456)
T ss_pred ceeEEEECCC-------CcEEEEecCCCeEEEEEc---cCCcceeee---------------------------------
Confidence 999999999 889999999999999994 456665554
Q ss_pred EcccCCCC---CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcC
Q 000055 2448 YIPKAHLG---SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2448 di~~gH~~---~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
.+|.. .+.+...++.+.++++|+.|+.|++||..++..+..+ .+|. ...+..++++|
T Consensus 373 ---~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l--------------~~h~---~~~~~~~~~~~ 432 (456)
T KOG0266|consen 373 ---TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL--------------EGHS---KAAVSDLSSHP 432 (456)
T ss_pred ---cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh--------------cCCC---CCceeccccCC
Confidence 34444 3344455789999999999999999999998877655 6673 24456778999
Q ss_pred Ce--EEEEE--CCCcEEEEECC
Q 000055 2525 RG--FLSCG--GDGSVKLIQLE 2542 (2548)
Q Consensus 2525 dG--LaSGS--~DGtIrIWDL~ 2542 (2548)
.. +++++ .|+.+++|..+
T Consensus 433 ~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 433 TENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CcCeeeecCcCCCceEEEecCC
Confidence 88 66766 79999999865
No 42
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.87 E-value=5e-21 Score=249.75 Aligned_cols=292 Identities=16% Similarity=0.210 Sum_probs=219.3
Q ss_pred EEEEEEcCCCCEEEEEE--CCCeEEEEEcCCCc-eeEEEec-cCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000055 2222 TRAFSSHPLRPFFLVGS--SNTHIYLWEFGKDK-ATATYGV-LPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS--~DGsVrLWDl~tg~-~l~t~~~-l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrV 2297 (2548)
+..++.||+|..++||+ .||.++||+.+.-- ....... ++.+-.....|.+.|+|++|+|||.+||+|+.|+.|.+
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i 95 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI 95 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence 78999999999999999 99999999975311 0000000 22222234457899999999999999999999999999
Q ss_pred EEcCC----------CcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc
Q 000055 2298 WQLEV----------GGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH 2365 (2548)
Q Consensus 2298 WDl~t----------gk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH 2365 (2548)
|+... |.............+.+|..+|. +|+|++.++++++ .|++|.||+.++ .+.+..+.+|
T Consensus 96 W~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s---~DnsViiwn~~t--F~~~~vl~~H 170 (942)
T KOG0973|consen 96 WERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS---LDNSVIIWNAKT--FELLKVLRGH 170 (942)
T ss_pred eeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec---ccceEEEEcccc--ceeeeeeecc
Confidence 99873 11111222234456889999997 4999999999996 899999999987 6889999999
Q ss_pred CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCC--CCCCCccccccccCCCCCCccCC---
Q 000055 2366 EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSD--RGGSSINTCAHADAQTGSGSKPG--- 2440 (2548)
Q Consensus 2366 s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~--~~~s~~~~~~vafSpdGk~v~s~--- 2440 (2548)
.+.|..+.|.|- |++++|-+.|++|++|++. +-...+.+..+ ..........+.|+|||.+++..
T Consensus 171 ~s~VKGvs~DP~-------Gky~ASqsdDrtikvwrt~---dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 171 QSLVKGVSWDPI-------GKYFASQSDDRTLKVWRTS---DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred cccccceEECCc-------cCeeeeecCCceEEEEEcc---cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 999999999999 8999999999999999942 22233332111 12223445567899999983322
Q ss_pred ---CCCceEEE--------cccCCCCCEEEEEEeCC-----CC------------EEEEEeCCCcEEEEECCCCcEEEEe
Q 000055 2441 ---DQNGMLWY--------IPKAHLGSVTRISTVPN-----TS------------LFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2441 ---D~sv~Iwd--------i~~gH~~~VtsLafSPd-----G~------------~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
...+.|.+ .+-||.+++.+++|+|. .. .+|+||.|++|.||.....+++...
T Consensus 241 n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi 320 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI 320 (942)
T ss_pred cCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh
Confidence 22334432 24589999999999992 11 7899999999999999888887655
Q ss_pred cccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000055 2493 SKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2493 ~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
. . +.+ ..|.+++|+||| |+.||.||+|.+..++.+.
T Consensus 321 ~------~-----lf~------~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 321 H------N-----LFN------KSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred h------h-----hhc------CceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 1 1 122 347899999999 8999999999999997653
No 43
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.86 E-value=6.4e-20 Score=223.45 Aligned_cols=283 Identities=17% Similarity=0.258 Sum_probs=203.0
Q ss_pred CeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeE--EEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----
Q 000055 2219 NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATA--TYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---- 2292 (2548)
Q Consensus 2219 gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~--t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---- 2292 (2548)
.+.+....|+|.|.|+|+|...|+|||||....+.+. ++..+ .++|.+++|+.++++++..+..
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~----------aG~I~Di~Wd~ds~RI~avGEGrerf 128 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVL----------AGPIKDISWDFDSKRIAAVGEGRERF 128 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeec----------ccccccceeCCCCcEEEEEecCccce
Confidence 4457888899999999999999999999987643322 23222 2778888888888877766543
Q ss_pred CcEEEEEcCCC------c--c---ccc---cc-------------------CccceeccCCcccEEE--EcCCCCEEEEE
Q 000055 2293 GTVCTWQLEVG------G--R---SNV---RP-------------------MESCLCFSSHAMDVSY--ITSSGSVIAAA 2337 (2548)
Q Consensus 2293 GtVrVWDl~tg------k--~---i~i---~p-------------------~~s~~t~~gH~~~V~a--fSpdGslLATg 2337 (2548)
|.+.+||-.+. . . ..+ +| +.-..++..|..-|.+ ++|||++++++
T Consensus 129 g~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~ 208 (603)
T KOG0318|consen 129 GHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATA 208 (603)
T ss_pred eEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEe
Confidence 35666665321 0 0 001 11 1112234556666665 89999999999
Q ss_pred eccCCCCeEEEEECCCCCCCcceeee---ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000055 2338 GHSSNGINVVVWDTLAPPTSSRASIT---CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2338 G~SS~DGtVrIWDl~t~~~k~v~sl~---gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
| .||+|.+||=.+ ++.+..+. +|.+.|.+++|+|+ ++.++|++.|.+++||| ..+.++++++
T Consensus 209 g---sDgki~iyDGkt--ge~vg~l~~~~aHkGsIfalsWsPD-------s~~~~T~SaDkt~KIWd---Vs~~slv~t~ 273 (603)
T KOG0318|consen 209 G---SDGKIYIYDGKT--GEKVGELEDSDAHKGSIFALSWSPD-------STQFLTVSADKTIKIWD---VSTNSLVSTW 273 (603)
T ss_pred c---CCccEEEEcCCC--ccEEEEecCCCCccccEEEEEECCC-------CceEEEecCCceEEEEE---eeccceEEEe
Confidence 8 899999999876 66677776 89999999999999 78999999999999999 6677888777
Q ss_pred cCCCCCCCccccccccCCCCCCccCCCCCceEE--------EcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000055 2415 HSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW--------YIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2415 ~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw--------di~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
.....-. ...-.+.|..+.-...+.++.+..+ ++..||...|++++.+|++++|++|+.||.|.-||..+|
T Consensus 274 ~~~~~v~-dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 274 PMGSTVE-DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred ecCCchh-ceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence 3222100 0111122332222234444444444 356899999999999999999999999999999999988
Q ss_pred cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000055 2487 QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2487 ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
..-... -++|.+.| .+++-+..+ ++|+|.|.++|+-++..+
T Consensus 353 ~~~~~~-------------g~~h~nqI----~~~~~~~~~~~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 353 TSDRLA-------------GKGHTNQI----KGMAASESGELFTIGWDDTLRVISLKDN 394 (603)
T ss_pred cccccc-------------cccccceE----EEEeecCCCcEEEEecCCeEEEEecccC
Confidence 764322 25677544 566788766 999999999999988543
No 44
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.86 E-value=1.8e-20 Score=226.29 Aligned_cols=277 Identities=18% Similarity=0.249 Sum_probs=220.0
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCC----CCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000055 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPP----YALASISALQFDHYGHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~----~H~~~VtsVaFSPdG~~LaSGS~DGtVr 2296 (2548)
|.+.+|+|... .+++|+.|-..++|++............-.|.++.. .....|++++|+.+|..||+|+.||.++
T Consensus 181 V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~r 260 (524)
T KOG0273|consen 181 VFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEAR 260 (524)
T ss_pred eEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEE
Confidence 78899999877 899999999999999874111100000001111111 1236799999999999999999999999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000055 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
+|+..... ..++..|..+|.+ |+..|.+|+++| .|+++.+||..+ +...+.+.-|+.+...|.|
T Consensus 261 iw~~~G~l---------~~tl~~HkgPI~slKWnk~G~yilS~~---vD~ttilwd~~~--g~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 261 IWNKDGNL---------ISTLGQHKGPIFSLKWNKKGTYILSGG---VDGTTILWDAHT--GTVKQQFEFHSAPALDVDW 326 (524)
T ss_pred EEecCchh---------hhhhhccCCceEEEEEcCCCCEEEecc---CCccEEEEeccC--ceEEEeeeeccCCccceEE
Confidence 99987542 1247789999986 888999999997 999999999976 6677888889988888998
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc---
Q 000055 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI--- 2449 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi--- 2449 (2548)
-.++ .+++++.||.|+++-+ ...+++.++.. .......+-|.|.|.+ .++.|++++||..
T Consensus 327 ~~~~--------~F~ts~td~~i~V~kv---~~~~P~~t~~G----H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 327 QSND--------EFATSSTDGCIHVCKV---GEDRPVKTFIG----HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred ecCc--------eEeecCCCceEEEEEe---cCCCcceeeec----ccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 7765 8999999999999994 44455555521 2223456789999998 7788999999984
Q ss_pred -----ccCCCCCEEEEEEeCCC---------CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceee
Q 000055 2450 -----PKAHLGSVTRISTVPNT---------SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2450 -----~~gH~~~VtsLafSPdG---------~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
+.+|...|+.+.|+|+| ..+++++.|++|++||+..+.++++| ..|. .
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f--------------~kH~----~ 453 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL--------------MKHQ----E 453 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee--------------ccCC----C
Confidence 45799999999999965 57999999999999999999999887 4565 4
Q ss_pred cEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000055 2516 GVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2516 ~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.|++++|+|+| +|+|+.||.|.+|+.+.+.
T Consensus 454 pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred ceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 56788999999 9999999999999998764
No 45
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.86 E-value=2.5e-20 Score=210.95 Aligned_cols=214 Identities=18% Similarity=0.256 Sum_probs=175.1
Q ss_pred CCCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000055 2213 PPATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2213 p~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
|..++++|+ |.++.|+-+|+++.||+.||+++|||++...+.+.|+ |..+|+++..+|+...|++|.
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-----------~~spVn~vvlhpnQteLis~d 143 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-----------HNSPVNTVVLHPNQTELISGD 143 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-----------CCCCcceEEecCCcceEEeec
Confidence 456777775 8999999999999999999999999998855544442 458999999999999999999
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCC----CCcceeeec
Q 000055 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPP----TSSRASITC 2364 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~----~k~v~sl~g 2364 (2548)
.+|.|++||+....+.... .+.-...|. .+.|||+.++.+. +.|+.++|++.... ..++..++.
T Consensus 144 qsg~irvWDl~~~~c~~~l-------iPe~~~~i~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHEL-------IPEDDTSIQSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred CCCcEEEEEccCCcccccc-------CCCCCcceeeEEEcCCCcEEEEec---CCccEEEEEccCCCccccceEhhheec
Confidence 9999999999876543211 122223343 3789999999985 88999999986422 346788999
Q ss_pred cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCc
Q 000055 2365 HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNG 2444 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv 2444 (2548)
|++.+..+.++|+ +++|+++|.|.+++||+.... -+.-..
T Consensus 214 h~~~il~C~lSPd-------~k~lat~ssdktv~iwn~~~~--~kle~~------------------------------- 253 (311)
T KOG0315|consen 214 HNGHILRCLLSPD-------VKYLATCSSDKTVKIWNTDDF--FKLELV------------------------------- 253 (311)
T ss_pred ccceEEEEEECCC-------CcEEEeecCCceEEEEecCCc--eeeEEE-------------------------------
Confidence 9999999999999 799999999999999995421 011122
Q ss_pred eEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000055 2445 MLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2445 ~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.++|..+++..+|+.+|+||+||+.|+.+++||++.++.+..+
T Consensus 254 -----l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 254 -----LTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred -----eecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec
Confidence 2789999999999999999999999999999999999998877
No 46
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.3e-19 Score=198.30 Aligned_cols=289 Identities=18% Similarity=0.213 Sum_probs=207.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCC-----CCCCCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN-----VPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs-----~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVr 2296 (2548)
+++++|||.|.+.++|+...+.+|.....-..++.-...+..+ .+...|.+.|+|.+|+|+|.++++|+.|++|+
T Consensus 35 irav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik 114 (350)
T KOG0641|consen 35 IRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIK 114 (350)
T ss_pred eeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEE
Confidence 7999999999999999999999998654311110000000000 14556889999999999999999999999999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEE--EE----cCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000055 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVS--YI----TSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~--af----SpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
+...+...+.... ....+..|...|. +| ...|.+++++| -.|..|++-|... ++..+.+.+|++-|.
T Consensus 115 ~l~fn~dt~~~~g---~dle~nmhdgtirdl~fld~~~s~~~il~s~g--agdc~iy~tdc~~--g~~~~a~sghtghil 187 (350)
T KOG0641|consen 115 VLPFNADTCNATG---HDLEFNMHDGTIRDLAFLDDPESGGAILASAG--AGDCKIYITDCGR--GQGFHALSGHTGHIL 187 (350)
T ss_pred EEecccccccccC---cceeeeecCCceeeeEEecCCCcCceEEEecC--CCcceEEEeecCC--CCcceeecCCcccEE
Confidence 9887655433222 2334666777665 33 22467888887 3577777777765 788999999999999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecC---CCCCCCccccccccCCCCCC--ccCCCCCce
Q 000055 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHS---DRGGSSINTCAHADAQTGSG--SKPGDQNGM 2445 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~---~~~~s~~~~~~vafSpdGk~--v~s~D~sv~ 2445 (2548)
++--.. +-++++|+.|.+|++||+|. ..++.++.+ ..+-.......++..|.|++ .+-.|....
T Consensus 188 alyswn--------~~m~~sgsqdktirfwdlrv---~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ 256 (350)
T KOG0641|consen 188 ALYSWN--------GAMFASGSQDKTIRFWDLRV---NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCM 256 (350)
T ss_pred EEEEec--------CcEEEccCCCceEEEEeeec---cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceE
Confidence 885322 44999999999999999874 344444422 22223344566788999998 455667778
Q ss_pred EEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000055 2446 LWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2446 Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
+||+ +..|...|.|+.|+|...|++|++.|..|++=|++ |.+.++++. -....|.+. +
T Consensus 257 lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~---------~vv~ehkdk----~ 322 (350)
T KOG0641|consen 257 LYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPI---------MVVAEHKDK----A 322 (350)
T ss_pred EEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCce---------EEEEeccCc----e
Confidence 8875 45699999999999999999999999999999986 444333310 001224332 3
Q ss_pred EEEEEcCCe--EEEEECCCcEEEEECC
Q 000055 2518 TDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2518 tsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
..+.|+|.. +++.++|.++.+|-+.
T Consensus 323 i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 323 IQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEecCccceeeeccCcceEEEeccC
Confidence 466999998 9999999999999875
No 47
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.85 E-value=4.1e-20 Score=231.46 Aligned_cols=256 Identities=22% Similarity=0.255 Sum_probs=210.6
Q ss_pred cCCCCccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000055 2211 VDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2211 v~p~~tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
+.+.++++...+.+..|-|.++++++|...|.+.+||+.....+.+++ .|.+.|++++.+||+..++||+
T Consensus 404 ~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~----------AHdgaIWsi~~~pD~~g~vT~s 473 (888)
T KOG0306|consen 404 LKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR----------AHDGAIWSISLSPDNKGFVTGS 473 (888)
T ss_pred cceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh----------ccccceeeeeecCCCCceEEec
Confidence 344556666668899999999999999999999999999887776653 3669999999999999999999
Q ss_pred CCCcEEEEEcCCCcc-----cccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee
Q 000055 2291 LDGTVCTWQLEVGGR-----SNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~-----i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~ 2363 (2548)
.|.+|++||..--.. ..........++ .-..+|.| +||||+++|++- -|++|+||-+.+ .+...++.
T Consensus 474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsL---LdnTVkVyflDt--lKFflsLY 547 (888)
T KOG0306|consen 474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSL---LDNTVKVYFLDT--LKFFLSLY 547 (888)
T ss_pred CCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEe---ccCeEEEEEecc--eeeeeeec
Confidence 999999999752211 000000011111 12345554 899999999985 899999999986 67778889
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000055 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
||.=+|.|+..+|+ +++++|||.|++|++|- ++-|.|.+.+
T Consensus 548 GHkLPV~smDIS~D-------SklivTgSADKnVKiWG---LdFGDCHKS~----------------------------- 588 (888)
T KOG0306|consen 548 GHKLPVLSMDISPD-------SKLIVTGSADKNVKIWG---LDFGDCHKSF----------------------------- 588 (888)
T ss_pred ccccceeEEeccCC-------cCeEEeccCCCceEEec---cccchhhhhh-----------------------------
Confidence 99999999999999 78999999999999999 5568887776
Q ss_pred ceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEc
Q 000055 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVV 2523 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafS 2523 (2548)
.+|+..|.+|.|-|....++|+|.||.|+-||-...+.++++ .||... |++++.+
T Consensus 589 -------fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L--------------~~H~~e----v~cLav~ 643 (888)
T KOG0306|consen 589 -------FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL--------------DGHHSE----VWCLAVS 643 (888)
T ss_pred -------hcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee--------------ccchhe----eeeeEEc
Confidence 789999999999999999999999999999999988888877 677654 4667999
Q ss_pred CCe--EEEEECCCcEEEEECCCCcc
Q 000055 2524 SRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2524 PdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
|+| ++|+|.|.+||+|.-.+..+
T Consensus 644 ~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 644 PNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred CCCCeEEeccCCceeEeeeccCcce
Confidence 999 88999999999999876543
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.85 E-value=5.9e-21 Score=227.23 Aligned_cols=226 Identities=19% Similarity=0.316 Sum_probs=184.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|+++.|+++|.++++|+.+|.|++|+..-...... .+ .|...|++++|+|+...|++|+.||+|+|||..
T Consensus 141 Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~----~a------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 141 VRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII----QA------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred ceeEEEccCCCEEEEcCCCceEEecccchhhhHHh----hH------hhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence 79999999999999999999999999775432211 12 255899999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
..+.. ..+.+|..+|.+ |.|...+|+++| .|..|++||.++ +.++.++.+|...|..+.|+++
T Consensus 211 ~~kee--------~vL~GHgwdVksvdWHP~kgLiasgs---kDnlVKlWDprS--g~cl~tlh~HKntVl~~~f~~n-- 275 (464)
T KOG0284|consen 211 MPKEE--------RVLRGHGWDVKSVDWHPTKGLIASGS---KDNLVKLWDPRS--GSCLATLHGHKNTVLAVKFNPN-- 275 (464)
T ss_pred CCchh--------heeccCCCCcceeccCCccceeEEcc---CCceeEeecCCC--cchhhhhhhccceEEEEEEcCC--
Confidence 66533 236899998876 889999999986 899999999998 7899999999999999999999
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCC---CccCCCCCceEEEcc------
Q 000055 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGS---GSKPGDQNGMLWYIP------ 2450 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk---~v~s~D~sv~Iwdi~------ 2450 (2548)
+++|+|+|.|..++++|+|.++. +..++ ++ ......++++|-.. .+++.|+.+..|.+.
T Consensus 276 -----~N~Llt~skD~~~kv~DiR~mkE---l~~~r---~H-kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 276 -----GNWLLTGSKDQSCKVFDIRTMKE---LFTYR---GH-KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG 343 (464)
T ss_pred -----CCeeEEccCCceEEEEehhHhHH---HHHhh---cc-hhhheeeccccccccceeeccCCCceEEEecccccccc
Confidence 79999999999999999884332 22221 11 11233455555422 278889999888743
Q ss_pred ---cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000055 2451 ---KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2451 ---~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.+|...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus 344 ~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 344 EIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred CCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 5799999999999999999999999999999753
No 49
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.2e-19 Score=206.04 Aligned_cols=238 Identities=16% Similarity=0.249 Sum_probs=185.7
Q ss_pred EEEEEcCC-CCEEEE--E-----ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCC
Q 000055 2223 RAFSSHPL-RPFFLV--G-----SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDG 2293 (2548)
Q Consensus 2223 ~~VsfSPd-G~~LAS--G-----S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DG 2293 (2548)
.++.|+|- .++||. + ...|++.|-+...+.-+..+..+. -.+.+.+++|+++ .+.+++++.||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d--------~~D~LfdV~Wse~~e~~~~~a~GDG 83 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD--------TEDGLFDVAWSENHENQVIAASGDG 83 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee--------cccceeEeeecCCCcceEEEEecCc
Confidence 46677772 223332 2 457889999997555555443322 1378999999995 67899999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEEE--cC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000055 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYI--TS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~af--Sp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
++++||.... ..+..+++.|...|.++ ++ .+..++++ |.|++|++||... .+.+.++.+|..-|.
T Consensus 84 SLrl~d~~~~-------s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts---SWD~TiKLW~~~r--~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 84 SLRLFDLTMP-------SKPIHKFKEHKREVYSVDWNTVRRRIFLTS---SWDGTIKLWDPNR--PNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEeccCCC-------CcchhHHHhhhhheEEeccccccceeEEee---ccCCceEeecCCC--CcceEeecCCccEEE
Confidence 9999995422 23456789999999874 44 34456665 5999999999976 678999999999999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000055 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
...|+|.. .+++++++.||++++||+|. .|+.+. +
T Consensus 152 ~a~~sp~~------~nlfas~Sgd~~l~lwdvr~--~gk~~~-i------------------------------------ 186 (311)
T KOG0277|consen 152 QAAFSPHI------PNLFASASGDGTLRLWDVRS--PGKFMS-I------------------------------------ 186 (311)
T ss_pred EEecCCCC------CCeEEEccCCceEEEEEecC--CCceeE-E------------------------------------
Confidence 99999996 88999999999999999874 244433 3
Q ss_pred cCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCC-cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--
Q 000055 2451 KAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAA-QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-- 2526 (2548)
Q Consensus 2451 ~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tg-ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-- 2526 (2548)
..|...|.++.|+. +...|+||+.|+.|++||++.- .++.++ .||+ -+|..++|||..
T Consensus 187 ~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL--------------~gh~----~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 187 EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL--------------NGHG----LAVRKVKFSPHHAS 248 (311)
T ss_pred EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee--------------cCCc----eEEEEEecCcchhh
Confidence 67999999999998 6689999999999999999863 444444 6777 346777999988
Q ss_pred -EEEEECCCcEEEEECCC
Q 000055 2527 -FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2527 -LaSGS~DGtIrIWDL~s 2543 (2548)
|+|++.|-++||||...
T Consensus 249 lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPER 266 (311)
T ss_pred HhhhccccceEEeccccc
Confidence 89999999999999874
No 50
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.84 E-value=6.9e-20 Score=237.77 Aligned_cols=234 Identities=23% Similarity=0.390 Sum_probs=200.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+..|+ +.++++|+.|.++++||..++..+.. +..+|.+.|+++++...+.++++|+.|.++++||..
T Consensus 211 ~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~---------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 211 VLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT---------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS 279 (537)
T ss_pred hhhheee--cCeEEecCCCceeEEeecccceEEEe---------eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC
Confidence 6777776 67899999999999999999887766 123477999999999889999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
+|++.. .+.+|...|.++.-.+.++++| |.|.+|++|++.+ +.++..+.+|.+.|+++..+.+
T Consensus 280 sg~C~~--------~l~gh~stv~~~~~~~~~~~sg---s~D~tVkVW~v~n--~~~l~l~~~h~~~V~~v~~~~~---- 342 (537)
T KOG0274|consen 280 TGECTH--------SLQGHTSSVRCLTIDPFLLVSG---SRDNTVKVWDVTN--GACLNLLRGHTGPVNCVQLDEP---- 342 (537)
T ss_pred CCcEEE--------EecCCCceEEEEEccCceEeec---cCCceEEEEeccC--cceEEEeccccccEEEEEecCC----
Confidence 998654 4789999999988777777776 4999999999986 7889999899999999998733
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEE
Q 000055 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIS 2461 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLa 2461 (2548)
++++|+.||+|++|| ..+++++..+ ++|.++|+++.
T Consensus 343 -----~lvsgs~d~~v~VW~---~~~~~cl~sl------------------------------------~gH~~~V~sl~ 378 (537)
T KOG0274|consen 343 -----LLVSGSYDGTVKVWD---PRTGKCLKSL------------------------------------SGHTGRVYSLI 378 (537)
T ss_pred -----EEEEEecCceEEEEE---hhhceeeeee------------------------------------cCCcceEEEEE
Confidence 999999999999999 4578888887 88999999998
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCC-cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEECCCcEEEEE
Q 000055 2462 TVPNTSLFLTGSKDGDVKLWDAKAA-QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2462 fSPdG~~LaSGS~DGtIrIWDl~Tg-ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWD 2540 (2548)
+.+. ..+++|+.|++|++||+.+. +++.++ .+|...+ .++.+...-|++++.||+|++||
T Consensus 379 ~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl--------------~~h~~~v----~~l~~~~~~Lvs~~aD~~Ik~WD 439 (537)
T KOG0274|consen 379 VDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL--------------QGHTSLV----SSLLLRDNFLVSSSADGTIKLWD 439 (537)
T ss_pred ecCc-ceEEeeeeccceEeecCCchhhhhhhh--------------cCCcccc----cccccccceeEeccccccEEEee
Confidence 8665 89999999999999999999 787766 6777544 44455455599999999999999
Q ss_pred CCCCcc
Q 000055 2541 LEDYQH 2546 (2548)
Q Consensus 2541 L~sg~l 2546 (2548)
..++..
T Consensus 440 ~~~~~~ 445 (537)
T KOG0274|consen 440 AEEGEC 445 (537)
T ss_pred cccCce
Confidence 987753
No 51
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.3e-19 Score=220.43 Aligned_cols=267 Identities=19% Similarity=0.272 Sum_probs=208.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|..++|+|..++=++....-.|.||+..+.....++..+. +.|.++.|-.||++++.|+..|.|+++|..
T Consensus 29 vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk----------~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFK----------DVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred ceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhc----------cceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 7889999988765555555679999988877666655433 789999999999999999999999999965
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+.. ....+.+|..++.. |+|+++.+++.| ++|+.+++||+.+ ......+.+|++.|.|.+++|.+
T Consensus 99 ~r~--------iLR~~~ah~apv~~~~f~~~d~t~l~s~--sDd~v~k~~d~s~--a~v~~~l~~htDYVR~g~~~~~~- 165 (487)
T KOG0310|consen 99 SRV--------ILRQLYAHQAPVHVTKFSPQDNTMLVSG--SDDKVVKYWDLST--AYVQAELSGHTDYVRCGDISPAN- 165 (487)
T ss_pred cHH--------HHHHHhhccCceeEEEecccCCeEEEec--CCCceEEEEEcCC--cEEEEEecCCcceeEeeccccCC-
Confidence 421 12347788887764 888776555544 5999999999986 33456888999999999999985
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCC-CccCCCCCceEEEccc-------
Q 000055 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGS-GSKPGDQNGMLWYIPK------- 2451 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk-~v~s~D~sv~Iwdi~~------- 2451 (2548)
..+++|||.||+|++||+|. .+ ..+..+ .+..+... +.+-|.|. ++..+.+.+++||+..
T Consensus 166 -----~hivvtGsYDg~vrl~DtR~-~~-~~v~el----nhg~pVe~-vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 166 -----DHIVVTGSYDGKVRLWDTRS-LT-SRVVEL----NHGCPVES-VLALPSGSLIASAGGNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred -----CeEEEecCCCceEEEEEecc-CC-ceeEEe----cCCCceee-EEEcCCCCEEEEcCCCeEEEEEecCCceehhh
Confidence 77999999999999999884 33 444444 12223333 34445544 4667778899999753
Q ss_pred --CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--E
Q 000055 2452 --AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2452 --gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--L 2527 (2548)
.|...|+|+++..++..|++||-||.|+|||+.+-+.++.+. ..++|.+++.+|++ +
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-------------------~~~pvLsiavs~dd~t~ 294 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-------------------YPGPVLSIAVSPDDQTV 294 (487)
T ss_pred hhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-------------------cccceeeEEecCCCceE
Confidence 389999999999999999999999999999998888888772 22557899999988 9
Q ss_pred EEEECCCcEEEEECC
Q 000055 2528 LSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2528 aSGS~DGtIrIWDL~ 2542 (2548)
+.|..||.+-+-+..
T Consensus 295 viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 295 VIGMSNGLVSIRRRE 309 (487)
T ss_pred EEecccceeeeehhh
Confidence 999999998776443
No 52
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.84 E-value=4.9e-20 Score=223.29 Aligned_cols=271 Identities=15% Similarity=0.247 Sum_probs=195.6
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEE
Q 000055 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWD 2299 (2548)
|..+.+.|+.+ .+|+++..+.|.|||..+........+--.-.++..+|.+.-+++.|++. .-.+++|+.|++|++||
T Consensus 127 VnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwd 206 (422)
T KOG0264|consen 127 VNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWD 206 (422)
T ss_pred chhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEe
Confidence 57777888766 55567889999999987643332211000001133456667788999984 55799999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEE--EEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000055 2300 LEVGGRSNVRPMESCLCFSSHAMDVS--YITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~--afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
+....... ........+.+|...|. +|++ +..+|+++| +|+.+.|||+|+...++.+...+|++.|+|++|+|
T Consensus 207 i~~~~~~~-~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~---dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp 282 (422)
T KOG0264|consen 207 INAESKED-KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG---DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNP 282 (422)
T ss_pred ccccccCC-ccccceEEeecCCcceehhhccccchhhheeec---CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCC
Confidence 98665421 11223455888988775 3554 567888887 99999999999644667888899999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCC
Q 000055 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS 2456 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~ 2456 (2548)
-+ +.+|||||.|++|++||+|.+.. ++.++ .+|...
T Consensus 283 ~~------~~ilAT~S~D~tV~LwDlRnL~~--~lh~~------------------------------------e~H~de 318 (422)
T KOG0264|consen 283 FN------EFILATGSADKTVALWDLRNLNK--PLHTF------------------------------------EGHEDE 318 (422)
T ss_pred CC------CceEEeccCCCcEEEeechhccc--Cceec------------------------------------cCCCcc
Confidence 96 88999999999999999986443 33333 889999
Q ss_pred EEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEEC
Q 000055 2457 VTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGG 2532 (2548)
Q Consensus 2457 VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~ 2532 (2548)
|.+|.|+|+ ...|++++.|+.+.|||+..-...+.-.....+..-+.-+-.||. +.|.++.|+|+. |+|.+.
T Consensus 319 v~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~----~kV~DfsWnp~ePW~I~Svae 394 (422)
T KOG0264|consen 319 VFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT----AKVSDFSWNPNEPWTIASVAE 394 (422)
T ss_pred eEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcc----cccccccCCCCCCeEEEEecC
Confidence 999999995 578999999999999999752222211011111110011124454 446788999999 889999
Q ss_pred CCcEEEEECCCC
Q 000055 2533 DGSVKLIQLEDY 2544 (2548)
Q Consensus 2533 DGtIrIWDL~sg 2544 (2548)
|+.+.||+....
T Consensus 395 DN~LqIW~~s~~ 406 (422)
T KOG0264|consen 395 DNILQIWQMAEN 406 (422)
T ss_pred CceEEEeecccc
Confidence 999999998754
No 53
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.84 E-value=7.2e-20 Score=211.20 Aligned_cols=262 Identities=19% Similarity=0.257 Sum_probs=191.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCC------CceeEEEeccCCCCC--CCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGK------DKATATYGVLPAANV--PPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~t------g~~l~t~~~l~ghs~--~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
+++.+|+|||.++|+|+.|.+|+|.|++. .+.+..-+....|++ ..-.|.+.|+++.|+|....|++|+.|+
T Consensus 115 cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~ 194 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDN 194 (430)
T ss_pred eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCC
Confidence 79999999999999999999999999872 111111011111111 1233779999999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccC-CcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee---eeccCCCe
Q 000055 2294 TVCTWQLEVGGRSNVRPMESCLCFSS-HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS---ITCHEGGA 2369 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~g-H~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s---l~gHs~~V 2369 (2548)
+|+++|........ ..+.++. +.-...+|.|.|.++++|. +..++++||+.+ .++... -.+|++.|
T Consensus 195 tvKlFDfsK~saKr-----A~K~~qd~~~vrsiSfHPsGefllvgT---dHp~~rlYdv~T--~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 195 TVKLFDFSKTSAKR-----AFKVFQDTEPVRSISFHPSGEFLLVGT---DHPTLRLYDVNT--YQCFVSANPDDQHTGAI 264 (430)
T ss_pred eEEEEecccHHHHH-----HHHHhhccceeeeEeecCCCceEEEec---CCCceeEEeccc--eeEeeecCcccccccce
Confidence 99999997542111 1111221 2222235899999999985 788999999986 444322 23799999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc
Q 000055 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi 2449 (2548)
++|.+++. +++.++|+.||.|++|| --+++|+.++.
T Consensus 265 ~~V~Ys~t-------~~lYvTaSkDG~IklwD---GVS~rCv~t~~---------------------------------- 300 (430)
T KOG0640|consen 265 TQVRYSST-------GSLYVTASKDGAIKLWD---GVSNRCVRTIG---------------------------------- 300 (430)
T ss_pred eEEEecCC-------ccEEEEeccCCcEEeec---cccHHHHHHHH----------------------------------
Confidence 99999998 88999999999999999 67788887761
Q ss_pred ccCCCC-CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc-------ccccccc--------cC---------
Q 000055 2450 PKAHLG-SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKL-------HERHTFL--------QP--------- 2504 (2548)
Q Consensus 2450 ~~gH~~-~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~-------Hs~hsfl--------~~--------- 2504 (2548)
.+|.+ .|.+..|..+|+|+++.|.|..+++|.+.+|+++.++.+. |..+-.| .+
T Consensus 301 -~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcs 379 (430)
T KOG0640|consen 301 -NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCS 379 (430)
T ss_pred -hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceee
Confidence 45654 6788888889999999999999999999999888888652 1110000 00
Q ss_pred -----------cccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECC
Q 000055 2505 -----------SSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2505 -----------tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
.--||.+.+ ..+.-||.+ ++|||.|-.+|+|--.
T Consensus 380 WdaRtadr~~l~slgHn~a~----R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 380 WDARTADRVALLSLGHNGAV----RWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccccchhhhhhcccCCCCCc----eEEEeCCCCCceeeecccceeeeeeec
Confidence 024566544 455788998 9999999999999743
No 54
>PTZ00421 coronin; Provisional
Probab=99.84 E-value=1e-18 Score=226.28 Aligned_cols=254 Identities=17% Similarity=0.187 Sum_probs=183.9
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccC---CCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEE
Q 000055 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLP---AANVPPPYALASISALQFDH-YGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~---ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVW 2298 (2548)
.....++++..+++++.+..+..|+...+..+..+.... .......+|.+.|++++|+| ++++|++|+.||+|++|
T Consensus 24 ~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIW 103 (493)
T PTZ00421 24 TPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGW 103 (493)
T ss_pred ccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence 344455777778888888888888876554332221110 00011346889999999999 88999999999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEE--EcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
|+.++.... ........+.+|...|.+ |+|++ ++|++++ .|++|+|||+.. ++.+..+.+|.+.|.+++|+
T Consensus 104 di~~~~~~~-~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs---~DgtVrIWDl~t--g~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 104 GIPEEGLTQ-NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG---ADMVVNVWDVER--GKAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred ecCCCcccc-ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe---CCCEEEEEECCC--CeEEEEEcCCCCceEEEEEE
Confidence 998653211 111234567889988874 88875 6888886 899999999986 56778888999999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000055 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
|+ +.+|++|+.||+|++||+| +++.+..+ .+|.+
T Consensus 178 pd-------G~lLatgs~Dg~IrIwD~r---sg~~v~tl------------------------------------~~H~~ 211 (493)
T PTZ00421 178 LD-------GSLLCTTSKDKKLNIIDPR---DGTIVSSV------------------------------------EAHAS 211 (493)
T ss_pred CC-------CCEEEEecCCCEEEEEECC---CCcEEEEE------------------------------------ecCCC
Confidence 98 7899999999999999965 45555554 55665
Q ss_pred C-EEEEEEeCCCCEEEEEe----CCCcEEEEECCCCc-EEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--E
Q 000055 2456 S-VTRISTVPNTSLFLTGS----KDGDVKLWDAKAAQ-LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2456 ~-VtsLafSPdG~~LaSGS----~DGtIrIWDl~Tge-ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--L 2527 (2548)
. +..+.|.+++..+++++ .|+.|++||+++.. ++... ..+.. ..+....|++++ +
T Consensus 212 ~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~--------------~~d~~---~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 212 AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV--------------DLDQS---SALFIPFFDEDTNLL 274 (493)
T ss_pred CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe--------------ccCCC---CceEEEEEcCCCCEE
Confidence 4 44677899888877765 47999999998654 33222 11111 223445789998 6
Q ss_pred EEEE-CCCcEEEEECCCCc
Q 000055 2528 LSCG-GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2528 aSGS-~DGtIrIWDL~sg~ 2545 (2548)
++|| .||+|++||+.++.
T Consensus 275 ~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 275 YIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EEEEeCCCeEEEEEeeCCc
Confidence 6666 69999999998764
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.84 E-value=9.4e-20 Score=211.13 Aligned_cols=237 Identities=20% Similarity=0.250 Sum_probs=185.6
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCC
Q 000055 2267 PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2267 ~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DG 2344 (2548)
.++|.+.|+.+.|+|+|.+|+||+.|..|.+|++.... .+ .....+|.+.|.. +..|++.++++| .|+
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN------~~~lkgHsgAVM~l~~~~d~s~i~S~g---tDk 112 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-EN------FWVLKGHSGAVMELHGMRDGSHILSCG---TDK 112 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-cc------eeeeccccceeEeeeeccCCCEEEEec---CCc
Confidence 35677999999999999999999999999999986432 22 2236799999985 889999999997 899
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000055 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
+|+.||.++ ++.+..+++|.+-|+++.-...+ ..++.||+.||++++||+|. ..+++++ .....
T Consensus 113 ~v~~wD~~t--G~~~rk~k~h~~~vNs~~p~rrg------~~lv~SgsdD~t~kl~D~R~---k~~~~t~-----~~kyq 176 (338)
T KOG0265|consen 113 TVRGWDAET--GKRIRKHKGHTSFVNSLDPSRRG------PQLVCSGSDDGTLKLWDIRK---KEAIKTF-----ENKYQ 176 (338)
T ss_pred eEEEEeccc--ceeeehhccccceeeecCccccC------CeEEEecCCCceEEEEeecc---cchhhcc-----cccee
Confidence 999999998 78999999999999999843332 45788999999999999873 2333332 11223
Q ss_pred ccccccCCCCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC----CcEEE
Q 000055 2425 TCAHADAQTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA----AQLVY 2490 (2548)
Q Consensus 2425 ~~~vafSpdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T----gell~ 2490 (2548)
...+.|..++.. .++-|+.+++|+. ..||...|+.+..+|+|.++.+-+.|.++++||++- .+++.
T Consensus 177 ltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~ 256 (338)
T KOG0265|consen 177 LTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVK 256 (338)
T ss_pred EEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEE
Confidence 455667666554 7888999999985 579999999999999999999999999999999973 33355
Q ss_pred EecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000055 2491 HWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2491 tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
.+ .||.-...--...++|+|++ +.+|+.|..+++||...
T Consensus 257 if--------------~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 257 IF--------------QGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred Ee--------------ecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 44 23221111112355899999 77999999999999876
No 56
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.9e-19 Score=204.78 Aligned_cols=226 Identities=17% Similarity=0.266 Sum_probs=181.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
|+.++|+|.|++|++|+.|.++.||.-..++ ++.++ .| |...|.+++|+++|++||||+.|++|-+|.
T Consensus 64 VRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l---EG-------HEnEVK~Vaws~sG~~LATCSRDKSVWiWe 133 (312)
T KOG0645|consen 64 VRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL---EG-------HENEVKCVAWSASGNYLATCSRDKSVWIWE 133 (312)
T ss_pred eeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee---ec-------cccceeEEEEcCCCCEEEEeeCCCeEEEEE
Confidence 7999999999999999999999999976543 34443 33 559999999999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECC-CCCCCcceeeeccCCCeEEEEEcc
Q 000055 2300 LEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTL-APPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~-t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
+..+.. +.....+++|..+|- .|+|...+|++++ .|++|++|+-. .....+++++.+|+..|++++|++
T Consensus 134 ~deddE-----fec~aVL~~HtqDVK~V~WHPt~dlL~S~S---YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~ 205 (312)
T KOG0645|consen 134 IDEDDE-----FECIAVLQEHTQDVKHVIWHPTEDLLFSCS---YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN 205 (312)
T ss_pred ecCCCc-----EEEEeeeccccccccEEEEcCCcceeEEec---cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC
Confidence 986543 234456889998885 4899999999985 89999999877 444678999999999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEc------
Q 000055 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYI------ 2449 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi------ 2449 (2548)
. |..|++++.|++|+||-.+..-++...+. .-.+++. +|.+ .+++|+.++++..
T Consensus 206 ~-------G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~-----------~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~ 266 (312)
T KOG0645|consen 206 I-------GSRLVSCSDDGTVSIWRLYTDLSGMHSRA-----------LYDVPWD-NGVIASGGGDDAIRLFKESDSPDE 266 (312)
T ss_pred C-------CceEEEecCCcceEeeeeccCcchhcccc-----------eEeeeec-ccceEeccCCCEEEEEEecCCCCC
Confidence 8 78999999999999998542111111111 1123444 5555 6778888888862
Q ss_pred ---------ccCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECC
Q 000055 2450 ---------PKAHLGSVTRISTVPN-TSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2450 ---------~~gH~~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~ 2484 (2548)
...|+..|++++|+|. ...|++||.||.|++|.+.
T Consensus 267 p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 267 PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred chHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 2368999999999995 6899999999999999874
No 57
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.84 E-value=3e-20 Score=209.91 Aligned_cols=271 Identities=18% Similarity=0.223 Sum_probs=219.5
Q ss_pred EEEEEEcC---CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000055 2222 TRAFSSHP---LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSP---dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
|..++|+| +|-+|++++.||.-.+-+-++|.-+.+|.+ |.+.|++...+.+..+-++++.|=+-++|
T Consensus 17 vvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg----------hkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 17 VVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG----------HKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred eeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec----------cCcceeeeecCchhhhhhhhcccchhhhh
Confidence 68888875 788999999999999999899999999864 66999999999999999999999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
|.-+|..+... -..|.-.-++|+.|.+.|++|| .++.++|+|++.+ ..+...+.+|+++|..+.|...
T Consensus 87 ~a~tgdelhsf-------~hkhivk~~af~~ds~~lltgg---~ekllrvfdln~p-~App~E~~ghtg~Ir~v~wc~e- 154 (334)
T KOG0278|consen 87 DAVTGDELHSF-------EHKHIVKAVAFSQDSNYLLTGG---QEKLLRVFDLNRP-KAPPKEISGHTGGIRTVLWCHE- 154 (334)
T ss_pred hhhhhhhhhhh-------hhhheeeeEEecccchhhhccc---hHHHhhhhhccCC-CCCchhhcCCCCcceeEEEecc-
Confidence 99988654321 1234444456999999999998 8999999999875 4566788899999999999887
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc-cCCCCCceEEEccc------
Q 000055 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS-KPGDQNGMLWYIPK------ 2451 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v-~s~D~sv~Iwdi~~------ 2451 (2548)
.+.+++.+.|++||+||. .++..++.+... .....+-++++|+++ ....+.+..|+...
T Consensus 155 ------D~~iLSSadd~tVRLWD~---rTgt~v~sL~~~-----s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs 220 (334)
T KOG0278|consen 155 ------DKCILSSADDKTVRLWDH---RTGTEVQSLEFN-----SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKS 220 (334)
T ss_pred ------CceEEeeccCCceEEEEe---ccCcEEEEEecC-----CCCcceeeccCCCEEEEecCceeEEeccccccceee
Confidence 467888899999999994 567777776221 223456788999994 44556678887421
Q ss_pred -CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE
Q 000055 2452 -AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL 2528 (2548)
Q Consensus 2452 -gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La 2528 (2548)
.-.-.|.+..++|+...+++|+.|+.++.||..+|+.+..+ -+||.++ |.++.|+|+| .+
T Consensus 221 ~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-------------nkgh~gp----VhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 221 YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-------------NKGHFGP----VHCVRFSPDGELYA 283 (334)
T ss_pred ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeec-------------ccCCCCc----eEEEEECCCCceee
Confidence 12346888999999999999999999999999999988754 2677754 5677999999 78
Q ss_pred EEECCCcEEEEECCCCc
Q 000055 2529 SCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2529 SGS~DGtIrIWDL~sg~ 2545 (2548)
+||.||+||+|....+.
T Consensus 284 sGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 284 SGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccCCCceEEEEEecCCC
Confidence 99999999999986553
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=5.6e-20 Score=208.72 Aligned_cols=235 Identities=17% Similarity=0.211 Sum_probs=184.1
Q ss_pred EEEEEEcCCC-CEEEEEECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEE
Q 000055 2222 TRAFSSHPLR-PFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG-~~LASGS~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVW 2298 (2548)
...++|+++. +.+++++.||+++|||... ..++..+++ |...|.++.|++ ++..+++++.||+|++|
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE----------H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE----------HKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh----------hhhheEEeccccccceeEEeeccCCceEee
Confidence 4778888864 5778999999999999653 234444433 568999999998 57778899999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
+...+. +..++.+|...|.. |+| .+++++++ |.|+.+++||++.+ ++... +..|...|.|+.|+
T Consensus 133 ~~~r~~--------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~---Sgd~~l~lwdvr~~-gk~~~-i~ah~~Eil~cdw~ 199 (311)
T KOG0277|consen 133 DPNRPN--------SVQTFNGHNSCIYQAAFSPHIPNLFASA---SGDGTLRLWDVRSP-GKFMS-IEAHNSEILCCDWS 199 (311)
T ss_pred cCCCCc--------ceEeecCCccEEEEEecCCCCCCeEEEc---cCCceEEEEEecCC-CceeE-EEeccceeEeeccc
Confidence 988654 34569999998874 777 46788887 48999999999985 44444 88999999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000055 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
.-+ ..+++||+.|+.|+.||+|++.+. +..+ .+|.-
T Consensus 200 ky~------~~vl~Tg~vd~~vr~wDir~~r~p--l~eL------------------------------------~gh~~ 235 (311)
T KOG0277|consen 200 KYN------HNVLATGGVDNLVRGWDIRNLRTP--LFEL------------------------------------NGHGL 235 (311)
T ss_pred ccC------CcEEEecCCCceEEEEehhhcccc--ceee------------------------------------cCCce
Confidence 875 779999999999999999864322 2222 78999
Q ss_pred CEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEE-EEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEE
Q 000055 2456 SVTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLV-YHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSC 2530 (2548)
Q Consensus 2456 ~VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell-~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSG 2530 (2548)
+|+.|+|+|. ..+|++++.|-+++|||...+.-. .+. ..|..- |..+.||+-. +|++
T Consensus 236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~--------------~~HtEF----v~g~Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 236 AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV--------------DHHTEF----VCGLDWSLFDPGQVAST 297 (311)
T ss_pred EEEEEecCcchhhHhhhccccceEEecccccchhhhhhh--------------hccceE----EeccccccccCceeeec
Confidence 9999999995 578999999999999999854433 222 334422 3455676543 9999
Q ss_pred ECCCcEEEEEC
Q 000055 2531 GGDGSVKLIQL 2541 (2548)
Q Consensus 2531 S~DGtIrIWDL 2541 (2548)
|-|+.++||+.
T Consensus 298 gWDe~l~Vw~p 308 (311)
T KOG0277|consen 298 GWDELLYVWNP 308 (311)
T ss_pred ccccceeeecc
Confidence 99999999984
No 59
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=4.5e-20 Score=217.17 Aligned_cols=267 Identities=15% Similarity=0.250 Sum_probs=206.0
Q ss_pred ccCCeE--EEEEEEcCCC-CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000055 2216 TVENIS--TRAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG-~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.+.+|. |.|++=||.. ..+++|+.||.|+|||+..-.+..+++. |.+.|..|++.. ..+++++.|
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A----------H~G~V~Gi~v~~--~~~~tvgdD 128 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKA----------HEGLVRGICVTQ--TSFFTVGDD 128 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeec----------ccCceeeEEecc--cceEEecCC
Confidence 345554 6888988876 6899999999999999998888888754 558999999987 679999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000055 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
++|+.|.++.. + ..++.+.. .+.. .+..++.++|+| ..|.|||... ..++..+.--.+.|.
T Consensus 129 KtvK~wk~~~~------p---~~tilg~s-~~~gIdh~~~~~~FaTcG-----e~i~IWD~~R--~~Pv~smswG~Dti~ 191 (433)
T KOG0268|consen 129 KTVKQWKIDGP------P---LHTILGKS-VYLGIDHHRKNSVFATCG-----EQIDIWDEQR--DNPVSSMSWGADSIS 191 (433)
T ss_pred cceeeeeccCC------c---ceeeeccc-cccccccccccccccccC-----ceeeeccccc--CCccceeecCCCcee
Confidence 99999998742 1 11121111 1111 234567888876 6799999975 678888887788999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEE
Q 000055 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWY 2448 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwd 2448 (2548)
++.|+|.. ...|++|+.|+.|.+||+|+ +..++.. ........+.|+|.+.. ++..|.+++.+|
T Consensus 192 svkfNpvE------TsILas~~sDrsIvLyD~R~---~~Pl~KV-----i~~mRTN~IswnPeafnF~~a~ED~nlY~~D 257 (433)
T KOG0268|consen 192 SVKFNPVE------TSILASCASDRSIVLYDLRQ---ASPLKKV-----ILTMRTNTICWNPEAFNFVAANEDHNLYTYD 257 (433)
T ss_pred EEecCCCc------chheeeeccCCceEEEeccc---CCcccee-----eeeccccceecCccccceeeccccccceehh
Confidence 99999985 77999999999999999875 3333222 11123456788885443 788888998888
Q ss_pred c---------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEE
Q 000055 2449 I---------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2449 i---------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
+ ..+|.++|.+|+|+|.|+-|++||.|.+|+||.++.+.....+ |..+. .-|.+
T Consensus 258 mR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY----------------htkRM-q~V~~ 320 (433)
T KOG0268|consen 258 MRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY----------------HTKRM-QHVFC 320 (433)
T ss_pred hhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh----------------hHhhh-heeeE
Confidence 4 5689999999999999999999999999999999877655443 22222 44788
Q ss_pred EEEcCCe--EEEEECCCcEEEEECC
Q 000055 2520 IQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2520 LafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
+.||-|. ++|||+|+.||+|.-.
T Consensus 321 Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 321 VKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred EEEeccccEEEecCCCcceeeeecc
Confidence 9999998 8899999999999864
No 60
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.82 E-value=8.5e-19 Score=200.33 Aligned_cols=256 Identities=18% Similarity=0.249 Sum_probs=203.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.-+.|+.+|.+|++++.|.++.||-..+|+.+.+|.+ |++.|+++..+-+.+.++||+.|.++++||++
T Consensus 13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G----------HtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG----------HTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC----------CCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 57889999999999999999999999999999999854 67999999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccE--EEEcCCCCEEEEEecc--CCCCeEEEEECCCCC-----CCcceeeeccCCCeEEE
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHS--SNGINVVVWDTLAPP-----TSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~S--S~DGtVrIWDl~t~~-----~k~v~sl~gHs~~VtSL 2372 (2548)
+|+.+...+ ....| +.|+++|++++..... ...+.|.++|++..+ .+++..+..+.+.++.+
T Consensus 83 tGk~la~~k---------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a 153 (327)
T KOG0643|consen 83 TGKQLATWK---------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSA 153 (327)
T ss_pred CCcEEEEee---------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeee
Confidence 998654321 12233 3489999988876310 034679999998432 34678888999999999
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000055 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
.|.|. +..|++|..||.|.+||+| +|+.+.. ..+.
T Consensus 154 ~Wg~l-------~~~ii~Ghe~G~is~~da~---~g~~~v~-----------------------------------s~~~ 188 (327)
T KOG0643|consen 154 LWGPL-------GETIIAGHEDGSISIYDAR---TGKELVD-----------------------------------SDEE 188 (327)
T ss_pred eeccc-------CCEEEEecCCCcEEEEEcc---cCceeee-----------------------------------chhh
Confidence 99998 7899999999999999954 4433222 1256
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccc------------------------------ccccc
Q 000055 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE------------------------------RHTFL 2502 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs------------------------------~hsfl 2502 (2548)
|...|+.++++|+..+++|||.|.+-++||+.+-++++++..+.. ...|.
T Consensus 189 h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFE 268 (327)
T KOG0643|consen 189 HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFE 268 (327)
T ss_pred hccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchh
Confidence 889999999999999999999999999999999988888753110 00010
Q ss_pred -----------cCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000055 2503 -----------QPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2503 -----------~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
..-.+||-++| .+++|+|+| .+|||.||.||+.-++.+.
T Consensus 269 ArFyh~i~eEEigrvkGHFGPI----NsvAfhPdGksYsSGGEDG~VR~h~Fd~~Y 320 (327)
T KOG0643|consen 269 ARFYHLIFEEEIGRVKGHFGPI----NSVAFHPDGKSYSSGGEDGYVRLHHFDSNY 320 (327)
T ss_pred hhHHHHHHHHHhccccccccCc----ceeEECCCCcccccCCCCceEEEEEeccch
Confidence 11257888766 455999999 8999999999999887653
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.82 E-value=1.6e-18 Score=238.07 Aligned_cols=261 Identities=18% Similarity=0.215 Sum_probs=189.4
Q ss_pred CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccC
Q 000055 2240 NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS 2319 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~g 2319 (2548)
+|.+++|+..+.+....++. + ....|.+.|.+++|+|+|+++++|+.||+|++|+.+.................+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~--~---~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~ 531 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQ--G---DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS 531 (793)
T ss_pred hhhhhhhcccceEEEEeecc--c---cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc
Confidence 56677787776554433321 0 123467999999999999999999999999999986421100000001111222
Q ss_pred CcccEE--EEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCc
Q 000055 2320 HAMDVS--YITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGD 2396 (2548)
Q Consensus 2320 H~~~V~--afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGt 2396 (2548)
+ ..+. +|++ ++.++++++ .||+|++||+.+ ++.+..+.+|.+.|++++|+|.+ +.+|++|+.||+
T Consensus 532 ~-~~v~~l~~~~~~~~~las~~---~Dg~v~lWd~~~--~~~~~~~~~H~~~V~~l~~~p~~------~~~L~Sgs~Dg~ 599 (793)
T PLN00181 532 R-SKLSGICWNSYIKSQVASSN---FEGVVQVWDVAR--SQLVTEMKEHEKRVWSIDYSSAD------PTLLASGSDDGS 599 (793)
T ss_pred c-CceeeEEeccCCCCEEEEEe---CCCeEEEEECCC--CeEEEEecCCCCCEEEEEEcCCC------CCEEEEEcCCCE
Confidence 2 2333 3544 578899886 899999999976 56788889999999999999864 779999999999
Q ss_pred EEEEeCCccccCceeeeecCCCCCCCcccccccc-CCCCCC--ccCCCCCceEEEcc---------cCCCCCEEEEEEeC
Q 000055 2397 VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHAD-AQTGSG--SKPGDQNGMLWYIP---------KAHLGSVTRISTVP 2464 (2548)
Q Consensus 2397 VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vaf-SpdGk~--v~s~D~sv~Iwdi~---------~gH~~~VtsLafSP 2464 (2548)
|++||+ .++..+..+... .....+.+ +++|.. +++.|+.+++||+. .+|...|.++.|.
T Consensus 600 v~iWd~---~~~~~~~~~~~~-----~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~- 670 (793)
T PLN00181 600 VKLWSI---NQGVSIGTIKTK-----ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV- 670 (793)
T ss_pred EEEEEC---CCCcEEEEEecC-----CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-
Confidence 999995 456666665211 12344555 455766 67788999999852 4688999999997
Q ss_pred CCCEEEEEeCCCcEEEEECCCC------cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcE
Q 000055 2465 NTSLFLTGSKDGDVKLWDAKAA------QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSV 2536 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~Tg------ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtI 2536 (2548)
++.+|++++.|++|++||++.+ +++.++ .||...+ ..++|+|++ |++|+.||+|
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~--------------~gh~~~i----~~v~~s~~~~~lasgs~D~~v 732 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF--------------MGHTNVK----NFVGLSVSDGYIATGSETNEV 732 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE--------------cCCCCCe----eEEEEcCCCCEEEEEeCCCEE
Confidence 7889999999999999999753 334333 6787544 556899988 8999999999
Q ss_pred EEEECCCC
Q 000055 2537 KLIQLEDY 2544 (2548)
Q Consensus 2537 rIWDL~sg 2544 (2548)
++|+....
T Consensus 733 ~iw~~~~~ 740 (793)
T PLN00181 733 FVYHKAFP 740 (793)
T ss_pred EEEECCCC
Confidence 99997543
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.82 E-value=6.9e-19 Score=228.51 Aligned_cols=234 Identities=21% Similarity=0.327 Sum_probs=194.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++++...+.++++|+.|.++++||..+|++...+.+ |.+.|.++... +..+++|+.|.+|++|+++
T Consensus 252 V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g----------h~stv~~~~~~--~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 252 VWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQG----------HTSSVRCLTID--PFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred ceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecC----------CCceEEEEEcc--CceEeeccCCceEEEEecc
Confidence 57888766788999999999999999999999999853 56888888765 5668889999999999999
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
++..+. .+.+|...|.++.-++.++++|+ .|++|++||+.+ .+++..+.+|.+.|.++.+.+.
T Consensus 320 n~~~l~--------l~~~h~~~V~~v~~~~~~lvsgs---~d~~v~VW~~~~--~~cl~sl~gH~~~V~sl~~~~~---- 382 (537)
T KOG0274|consen 320 NGACLN--------LLRGHTGPVNCVQLDEPLLVSGS---YDGTVKVWDPRT--GKCLKSLSGHTGRVYSLIVDSE---- 382 (537)
T ss_pred CcceEE--------EeccccccEEEEEecCCEEEEEe---cCceEEEEEhhh--ceeeeeecCCcceEEEEEecCc----
Confidence 887554 36679999999777789999985 899999999986 8999999999999999987662
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccC-ceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000055 2382 GSVSPLIVTGGKGGDVGIHDFRYIATG-KTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TG-k~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
..+++|+.|++|++||++ +. +++.++ .+|.+-|.++
T Consensus 383 ----~~~~Sgs~D~~IkvWdl~---~~~~c~~tl------------------------------------~~h~~~v~~l 419 (537)
T KOG0274|consen 383 ----NRLLSGSLDTTIKVWDLR---TKRKCIHTL------------------------------------QGHTSLVSSL 419 (537)
T ss_pred ----ceEEeeeeccceEeecCC---chhhhhhhh------------------------------------cCCccccccc
Confidence 399999999999999954 44 666665 7788888776
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEECCCcEEEEE
Q 000055 2461 STVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWD 2540 (2548)
.+ .+++|++++.||+|++||..++++++++... |. ..|+.+++...-+++++.||++++||
T Consensus 420 ~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-------------~~----~~v~~l~~~~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 420 LL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-------------HV----GGVSALALGKEEILCSSDDGSVKLWD 480 (537)
T ss_pred cc--ccceeEeccccccEEEeecccCceeeeeccC-------------Cc----ccEEEeecCcceEEEEecCCeeEEEe
Confidence 65 6789999999999999999999999988311 22 23455555533389999999999999
Q ss_pred CCCCcc
Q 000055 2541 LEDYQH 2546 (2548)
Q Consensus 2541 L~sg~l 2546 (2548)
++++.+
T Consensus 481 l~~~~~ 486 (537)
T KOG0274|consen 481 LRSGTL 486 (537)
T ss_pred cccCch
Confidence 998764
No 63
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.82 E-value=3.8e-19 Score=208.58 Aligned_cols=247 Identities=16% Similarity=0.332 Sum_probs=198.9
Q ss_pred CccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000055 2215 ATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.++.||- |+.+++++..+|+++++.|+.|+.||+...+.++.|. +|...|.+++.+|.-+.|+||+.|
T Consensus 187 ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh----------GHlS~V~~L~lhPTldvl~t~grD 256 (460)
T KOG0285|consen 187 LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH----------GHLSGVYCLDLHPTLDVLVTGGRD 256 (460)
T ss_pred EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhc----------cccceeEEEeccccceeEEecCCc
Confidence 3455543 7899999999999999999999999999988877763 477999999999999999999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000055 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
.++++||+++... ..++.||...|.. +.|..-.+++| |.|++|++||++. ++....+..|...|.
T Consensus 257 st~RvWDiRtr~~--------V~~l~GH~~~V~~V~~~~~dpqvit~---S~D~tvrlWDl~a--gkt~~tlt~hkksvr 323 (460)
T KOG0285|consen 257 STIRVWDIRTRAS--------VHVLSGHTNPVASVMCQPTDPQVITG---SHDSTVRLWDLRA--GKTMITLTHHKKSVR 323 (460)
T ss_pred ceEEEeeecccce--------EEEecCCCCcceeEEeecCCCceEEe---cCCceEEEeeecc--CceeEeeecccceee
Confidence 9999999997653 3458899998875 44545567777 4999999999987 677788889999999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000055 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
+++.+|. ...+++++.| .|+-|+ +..|..+..+
T Consensus 324 al~lhP~-------e~~fASas~d-nik~w~---~p~g~f~~nl------------------------------------ 356 (460)
T KOG0285|consen 324 ALCLHPK-------ENLFASASPD-NIKQWK---LPEGEFLQNL------------------------------------ 356 (460)
T ss_pred EEecCCc-------hhhhhccCCc-cceecc---CCccchhhcc------------------------------------
Confidence 9999999 5678887766 589999 4455555444
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCc-ccCCCCceeecEEEEEEcCCe--E
Q 000055 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPS-SRGFGGVVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~t-l~GH~~~V~a~VtsLafSPdG--L 2527 (2548)
.+|.+-|.+++.+.|| ++++|++.|.+.+||.++|-..+... +..++. +.+ .++|+..+|+..| |
T Consensus 357 sgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~------t~vqpGSl~s-----EagI~as~fDktg~rl 424 (460)
T KOG0285|consen 357 SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQ------TIVQPGSLES-----EAGIFASCFDKTGSRL 424 (460)
T ss_pred ccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccc------ccccCCcccc-----ccceeEEeecccCceE
Confidence 7899999999988765 77899999999999999987766441 111111 111 1457777999999 9
Q ss_pred EEEECCCcEEEEECCC
Q 000055 2528 LSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2528 aSGS~DGtIrIWDL~s 2543 (2548)
+||.+|.+|++|.-+.
T Consensus 425 it~eadKtIk~~keDe 440 (460)
T KOG0285|consen 425 ITGEADKTIKMYKEDE 440 (460)
T ss_pred EeccCCcceEEEeccc
Confidence 9999999999998654
No 64
>PTZ00420 coronin; Provisional
Probab=99.81 E-value=6.3e-18 Score=220.31 Aligned_cols=231 Identities=19% Similarity=0.163 Sum_probs=167.9
Q ss_pred EECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcCCCcccccccCccce
Q 000055 2237 GSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRSNVRPMESCL 2315 (2548)
Q Consensus 2237 GS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~ 2315 (2548)
|+.++.|++|+..+...+..+. +|.+.|.+++|+|+ +++|++|+.||+|++||+.++............
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~----------gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~ 119 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLK----------GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQC 119 (568)
T ss_pred CCceeEEEeeecCCCceEEEEc----------CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceE
Confidence 6678899999987765555543 36689999999996 789999999999999999865321101011233
Q ss_pred eccCCcccEEE--EcCCCCEE-EEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe
Q 000055 2316 CFSSHAMDVSY--ITSSGSVI-AAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG 2392 (2548)
Q Consensus 2316 t~~gH~~~V~a--fSpdGslL-ATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS 2392 (2548)
.+.+|...|.+ |+|++..+ ++++ .|++|+|||++. ++.+..+. |...|.+++|+|+ |.+|++++
T Consensus 120 ~L~gH~~~V~sVaf~P~g~~iLaSgS---~DgtIrIWDl~t--g~~~~~i~-~~~~V~Slswspd-------G~lLat~s 186 (568)
T PTZ00420 120 ILKGHKKKISIIDWNPMNYYIMCSSG---FDSFVNIWDIEN--EKRAFQIN-MPKKLSSLKWNIK-------GNLLSGTC 186 (568)
T ss_pred EeecCCCcEEEEEECCCCCeEEEEEe---CCCeEEEEECCC--CcEEEEEe-cCCcEEEEEECCC-------CCEEEEEe
Confidence 56788888864 89988765 5665 899999999986 44455554 6678999999998 78999999
Q ss_pred CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE-----EEEeCCCC
Q 000055 2393 KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR-----ISTVPNTS 2467 (2548)
Q Consensus 2393 ~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts-----LafSPdG~ 2467 (2548)
.|+.|+|||+| +++.+..+ .+|.+.+.+ ..|++++.
T Consensus 187 ~D~~IrIwD~R---sg~~i~tl------------------------------------~gH~g~~~s~~v~~~~fs~d~~ 227 (568)
T PTZ00420 187 VGKHMHIIDPR---KQEIASSF------------------------------------HIHDGGKNTKNIWIDGLGGDDN 227 (568)
T ss_pred cCCEEEEEECC---CCcEEEEE------------------------------------ecccCCceeEEEEeeeEcCCCC
Confidence 99999999955 46665554 567665433 34568999
Q ss_pred EEEEEeCCC----cEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEE
Q 000055 2468 LFLTGSKDG----DVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2468 ~LaSGS~DG----tIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
+++|+|.|+ .|+|||+++ ++++..+. +..+.+.+ .-....++| +++|+.|++|++|+
T Consensus 228 ~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~------------ld~~~~~L----~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 228 YILSTGFSKNNMREMKLWDLKNTTSALVTMS------------IDNASAPL----IPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred EEEEEEcCCCCccEEEEEECCCCCCceEEEE------------ecCCccce----EEeeeCCCCCEEEEEECCCeEEEEE
Confidence 999988774 799999995 66665541 12222221 121224456 78999999999999
Q ss_pred CCCCc
Q 000055 2541 LEDYQ 2545 (2548)
Q Consensus 2541 L~sg~ 2545 (2548)
+..+.
T Consensus 292 ~~~~~ 296 (568)
T PTZ00420 292 HSLGS 296 (568)
T ss_pred ccCCc
Confidence 97664
No 65
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.6e-18 Score=218.51 Aligned_cols=235 Identities=18% Similarity=0.314 Sum_probs=199.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.|+++|.+|++|..+|.|.|||..+.+.+..+.. .|...|.+++|+ +..+.+|+.||.|..+|++
T Consensus 220 vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~---------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 220 VTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG---------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred eEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC---------CcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence 79999999999999999999999999988777766542 266899999998 7789999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
..+... .+..+|...|+. |++|++++|+|| .|+.+.|||... ..+...+..|...|..++|+|-.
T Consensus 289 ~~~~~~-------~~~~~H~qeVCgLkws~d~~~lASGg---nDN~~~Iwd~~~--~~p~~~~~~H~aAVKA~awcP~q- 355 (484)
T KOG0305|consen 289 ISQHVV-------STLQGHRQEVCGLKWSPDGNQLASGG---NDNVVFIWDGLS--PEPKFTFTEHTAAVKALAWCPWQ- 355 (484)
T ss_pred cchhhh-------hhhhcccceeeeeEECCCCCeeccCC---CccceEeccCCC--ccccEEEeccceeeeEeeeCCCc-
Confidence 775322 137889999984 999999999998 899999999965 67888999999999999999995
Q ss_pred CCCCCCCEEEEEe--CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000055 2380 GSGSVSPLIVTGG--KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2380 g~gs~g~lLVSGS--~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
..+||+|+ .|+.|++|| ..+|..+... .-.+.|
T Consensus 356 -----~~lLAsGGGs~D~~i~fwn---~~~g~~i~~v-------------------------------------dtgsQV 390 (484)
T KOG0305|consen 356 -----SGLLATGGGSADRCIKFWN---TNTGARIDSV-------------------------------------DTGSQV 390 (484)
T ss_pred -----cCceEEcCCCcccEEEEEE---cCCCcEeccc-------------------------------------ccCCce
Confidence 77999986 699999999 5567766554 234689
Q ss_pred EEEEEeCCCCEEEEEe--CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC
Q 000055 2458 TRISTVPNTSLFLTGS--KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD 2533 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS--~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D 2533 (2548)
.+|.|++..+-|+++. .++.|.||+..+.+.+..+ .||..+| ..++++||| +++|++|
T Consensus 391 csL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l--------------~gH~~RV----l~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 391 CSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL--------------LGHTSRV----LYLALSPDGETIVTGAAD 452 (484)
T ss_pred eeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee--------------cCCccee----EEEEECCCCCEEEEeccc
Confidence 9999999887666653 3779999999998777655 7888655 667999999 9999999
Q ss_pred CcEEEEECCC
Q 000055 2534 GSVKLIQLED 2543 (2548)
Q Consensus 2534 GtIrIWDL~s 2543 (2548)
.++++|++-+
T Consensus 453 ETlrfw~~f~ 462 (484)
T KOG0305|consen 453 ETLRFWNLFD 462 (484)
T ss_pred CcEEeccccC
Confidence 9999999865
No 66
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.80 E-value=8.7e-18 Score=194.41 Aligned_cols=232 Identities=22% Similarity=0.381 Sum_probs=183.8
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeE
Q 000055 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtV 2346 (2548)
+|.+.|++++|+|+++++++++.||.|++|++.+++.. .....|...+. .+.++++.+++++ .||.|
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i 75 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--------RTLKGHTGPVRDVAASADGTYLASGS---SDKTI 75 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE--------EEEecCCcceeEEEECCCCCEEEEEc---CCCeE
Confidence 46699999999999999999999999999999876421 23556666663 4888998999986 79999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000055 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
++||+.. .+.+..+..|...+.++.|+++ +.++++++.||.|++||++ +++....+. .......
T Consensus 76 ~i~~~~~--~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~i~~~~~~---~~~~~~~~~----~~~~~i~ 139 (289)
T cd00200 76 RLWDLET--GECVRTLTGHTSYVSSVAFSPD-------GRILSSSSRDKTIKVWDVE---TGKCLTTLR----GHTDWVN 139 (289)
T ss_pred EEEEcCc--ccceEEEeccCCcEEEEEEcCC-------CCEEEEecCCCeEEEEECC---CcEEEEEec----cCCCcEE
Confidence 9999975 4677788889999999999998 5688888889999999954 455555542 1122345
Q ss_pred ccccCCCCCC-ccCC-CCCceEEEcc--------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000055 2427 AHADAQTGSG-SKPG-DQNGMLWYIP--------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2427 ~vafSpdGk~-v~s~-D~sv~Iwdi~--------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
.+.+++++.+ ++.. ++.+++|++. ..|...|.+++|+|+++.+++++.||.|++||+++++.+..+
T Consensus 140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~---- 215 (289)
T cd00200 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL---- 215 (289)
T ss_pred EEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch----
Confidence 6788888777 3333 8889999853 367789999999999999999999999999999988887655
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000055 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+ .+.+++|+|++ +++++.||.|++|++.++.
T Consensus 216 ----------~~~~~----~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 216 ----------RGHEN----GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred ----------hhcCC----ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce
Confidence 34543 45677999988 5566669999999998643
No 67
>PTZ00421 coronin; Provisional
Probab=99.80 E-value=1.3e-17 Score=216.25 Aligned_cols=207 Identities=16% Similarity=0.207 Sum_probs=157.5
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCCcee----EEEeccCCCCCCCCCCCCCeEEEEEccCC-CEEEEEeCCCcE
Q 000055 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKAT----ATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l----~t~~~l~ghs~~~~~H~~~VtsVaFSPdG-~~LaSGS~DGtV 2295 (2548)
|.+++|+| ++.+|++|+.||+|++||+.++... ..+..+ .+|...|.+++|+|++ +.|++|+.||+|
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-------~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-------QGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-------cCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 79999999 8899999999999999999865321 111112 2366899999999975 799999999999
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe-EEE
Q 000055 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA-RSI 2372 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V-tSL 2372 (2548)
++||+++++.. ..+.+|...|.+ |+|+|++|++++ .|+.|++||+++ ++.+..+.+|.+.+ ..+
T Consensus 151 rIWDl~tg~~~--------~~l~~h~~~V~sla~spdG~lLatgs---~Dg~IrIwD~rs--g~~v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 151 NVWDVERGKAV--------EVIKCHSDQITSLEWNLDGSLLCTTS---KDKKLNIIDPRD--GTIVSSVEAHASAKSQRC 217 (493)
T ss_pred EEEECCCCeEE--------EEEcCCCCceEEEEEECCCCEEEEec---CCCEEEEEECCC--CcEEEEEecCCCCcceEE
Confidence 99999977532 236678887864 899999999986 899999999987 56778888898653 467
Q ss_pred EEccCCCCCCCCCCEEEEEe----CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEE
Q 000055 2373 SVFDNDLGSGSVSPLIVTGG----KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY 2448 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS----~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwd 2448 (2548)
.|.++ +..+++++ .|+.|++||+|... +.+... +
T Consensus 218 ~w~~~-------~~~ivt~G~s~s~Dr~VklWDlr~~~--~p~~~~---------------------------------~ 255 (493)
T PTZ00421 218 LWAKR-------KDLIITLGCSKSQQRQIMLWDTRKMA--SPYSTV---------------------------------D 255 (493)
T ss_pred EEcCC-------CCeEEEEecCCCCCCeEEEEeCCCCC--CceeEe---------------------------------c
Confidence 77777 34565544 48999999976421 121111 0
Q ss_pred cccCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCcEEEEe
Q 000055 2449 IPKAHLGSVTRISTVPNTSLFLTGS-KDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2449 i~~gH~~~VtsLafSPdG~~LaSGS-~DGtIrIWDl~Tgell~tL 2492 (2548)
..+...+....|++++.+|++|+ .||.|++||+.+++++...
T Consensus 256 --~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 256 --LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred --cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 11234566678999999999988 4999999999999887654
No 68
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=7e-19 Score=222.34 Aligned_cols=231 Identities=17% Similarity=0.255 Sum_probs=195.8
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEE
Q 000055 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2271 ~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrI 2348 (2548)
...|..++|+|....++++-..|.|++||.+.+..+. .|..|.++|. .|+|++.++++|| +|..|++
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--------rFdeHdGpVRgv~FH~~qplFVSGG---DDykIkV 77 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--------RFDEHDGPVRGVDFHPTQPLFVSGG---DDYKIKV 77 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHh--------hhhccCCccceeeecCCCCeEEecC---CccEEEE
Confidence 3789999999999999999999999999998775432 3889999997 4999999999998 9999999
Q ss_pred EECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000055 2349 WDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
|+... .+++.++.||-+.|+.+.|++. -++++|+|.|.+|+||+ -++++++..+.. +. ....+.
T Consensus 78 WnYk~--rrclftL~GHlDYVRt~~FHhe-------yPWIlSASDDQTIrIWN---wqsr~~iavltG---Hn-HYVMcA 141 (1202)
T KOG0292|consen 78 WNYKT--RRCLFTLLGHLDYVRTVFFHHE-------YPWILSASDDQTIRIWN---WQSRKCIAVLTG---HN-HYVMCA 141 (1202)
T ss_pred Eeccc--ceehhhhccccceeEEeeccCC-------CceEEEccCCCeEEEEe---ccCCceEEEEec---Cc-eEEEee
Confidence 99986 7899999999999999999998 78999999999999999 778899888732 22 234567
Q ss_pred ccCCCCCC--ccCCCCCceEEEc-------------------------------------ccCCCCCEEEEEEeCCCCEE
Q 000055 2429 ADAQTGSG--SKPGDQNGMLWYI-------------------------------------PKAHLGSVTRISTVPNTSLF 2469 (2548)
Q Consensus 2429 afSpdGk~--v~s~D~sv~Iwdi-------------------------------------~~gH~~~VtsLafSPdG~~L 2469 (2548)
.|.|.... +++-|.++++||+ ..||+..|+-++|+|.-.++
T Consensus 142 qFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 142 QFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI 221 (1202)
T ss_pred ccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence 78886555 7788999999983 34899999999999999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000055 2470 LTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2470 aSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
++|++|..|++|.+..-+.- + ..+.+||.+.|. ++-|+|.. ++|.|.|++|||||+...
T Consensus 222 VSG~DDRqVKlWrmnetKaW-E-----------vDtcrgH~nnVs----svlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNETKAW-E-----------VDTCRGHYNNVS----SVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred EecCCcceeeEEEeccccce-e-----------ehhhhcccCCcc----eEEecCccceeEecCCCccEEEEecccc
Confidence 99999999999998744322 1 224699998774 45799977 889999999999999753
No 69
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=2.6e-18 Score=207.90 Aligned_cols=259 Identities=19% Similarity=0.253 Sum_probs=202.5
Q ss_pred EEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEE-ec---cCCC--CCCC--CCCCCCeEEEEEccCCCEEEEEeCC
Q 000055 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATY-GV---LPAA--NVPP--PYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~-~~---l~gh--s~~~--~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.+++++++|++.+.++++.||+|.=|++.+|....-+ .. ...| .... ..|...|.+++.++||++|++|+.|
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d 223 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRD 223 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCC
Confidence 3789999999999999999999999999988754211 11 1101 1112 3788999999999999999999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000055 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
..|.||+.++.+.+ +++.+|.+.|.+ |....+.+++++ .|+.|++|++.. ...+.++.+|.+.|.
T Consensus 224 ~~v~Iw~~~t~ehv--------~~~~ghr~~V~~L~fr~gt~~lys~s---~Drsvkvw~~~~--~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 224 RHVQIWDCDTLEHV--------KVFKGHRGAVSSLAFRKGTSELYSAS---ADRSVKVWSIDQ--LSYVETLYGHQDGVL 290 (479)
T ss_pred ceEEEecCcccchh--------hcccccccceeeeeeecCccceeeee---cCCceEEEehhH--hHHHHHHhCCcccee
Confidence 99999999988643 348899999974 555555666664 899999999975 567888999999999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000055 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
+|..... ...+.+|+.|+++++|++.. ..... +
T Consensus 291 ~IdaL~r-------eR~vtVGgrDrT~rlwKi~e----esqli------------------------------------f 323 (479)
T KOG0299|consen 291 GIDALSR-------ERCVTVGGRDRTVRLWKIPE----ESQLI------------------------------------F 323 (479)
T ss_pred eechhcc-------cceEEeccccceeEEEeccc----cceee------------------------------------e
Confidence 9987766 56777788999999999621 11111 2
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE
Q 000055 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL 2528 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La 2528 (2548)
.+|.+.+-|++|- +...|+|||.||.|.+|++.+.+++++.+.+|.-.+. +..-+.. ..|++++..|.. ++
T Consensus 324 rg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~----~~~~~~~--~Witsla~i~~sdL~a 396 (479)
T KOG0299|consen 324 RGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPE----LDPVNGN--FWITSLAVIPGSDLLA 396 (479)
T ss_pred eCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCC----ccccccc--cceeeeEecccCceEE
Confidence 6788999999997 4567899999999999999999999999777654432 1111110 256788998887 88
Q ss_pred EEECCCcEEEEECCCCcc
Q 000055 2529 SCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2529 SGS~DGtIrIWDL~sg~l 2546 (2548)
+|+.+|.||+|.+.+|..
T Consensus 397 sGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 397 SGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred ecCCCCceEEEEecCCcc
Confidence 999999999999999854
No 70
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=3.3e-18 Score=195.24 Aligned_cols=239 Identities=15% Similarity=0.169 Sum_probs=187.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEc
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl 2300 (2548)
+..++|+-+|..|++|+.|+++.+|+++.++..... ...+|.+.|-.++|+| ..+.|++++.|++|++||+
T Consensus 23 v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~--------~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL--------VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred ceEEEEcccCceeeecccCCceEEEEecchhhhhhh--------cccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 688999999999999999999999999987544443 2345678999999998 6789999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCC---------------------------
Q 000055 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLA--------------------------- 2353 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t--------------------------- 2353 (2548)
+.+++.... -....+-...|+|+|.++++++ .|..|.+.|.+.
T Consensus 95 r~~k~~~~i-------~~~~eni~i~wsp~g~~~~~~~---kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 95 RSGKCTARI-------ETKGENINITWSPDGEYIAVGN---KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFL 164 (313)
T ss_pred ccCcEEEEe-------eccCcceEEEEcCCCCEEEEec---CcccEEEEEecccceeehhcccceeeeeeecCCCCEEEE
Confidence 988754321 1222233345778888888775 666666666542
Q ss_pred ------------CCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC
Q 000055 2354 ------------PPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS 2421 (2548)
Q Consensus 2354 ------------~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s 2421 (2548)
+..+++..+++|.....||.|.|+ |+++++|+.|..+.+||+ ..--|.+.+
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~-------GryfA~GsADAlvSLWD~---~ELiC~R~i------- 227 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD-------GRYFATGSADALVSLWDV---DELICERCI------- 227 (313)
T ss_pred ecCCceEEEEeccccccccccccCCcceEEEEECCC-------CceEeeccccceeeccCh---hHhhhheee-------
Confidence 123566778899999999999999 899999999999999994 444555555
Q ss_pred CccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccccccc
Q 000055 2422 SINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTF 2501 (2548)
Q Consensus 2422 ~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsf 2501 (2548)
..++-+|+.+.|+.+|++||+||+|..|-|=++++|..+..++
T Consensus 228 -----------------------------sRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-------- 270 (313)
T KOG1407|consen 228 -----------------------------SRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-------- 270 (313)
T ss_pred -----------------------------ccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--------
Confidence 6688999999999999999999999999999999999998883
Q ss_pred ccCcccCCCCceeecEEEEEEcCCe--EEEEECC---------CcEEEEECCC
Q 000055 2502 LQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD---------GSVKLIQLED 2543 (2548)
Q Consensus 2502 l~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D---------GtIrIWDL~s 2543 (2548)
+. +....++|+|.. ||-+++| |+||+|-+++
T Consensus 271 -------~~----~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 271 -------CE----GPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred -------cc----CCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 11 223566999999 5544433 6889887765
No 71
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.1e-18 Score=223.97 Aligned_cols=239 Identities=17% Similarity=0.242 Sum_probs=181.0
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCC----------------------------cc--c------------
Q 000055 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVG----------------------------GR--S------------ 2306 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tg----------------------------k~--i------------ 2306 (2548)
.|.+.|+++.|++||++||+||.||.|+||.+... .. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 57799999999999999999999999999987550 00 0
Q ss_pred ---cc-------ccCccceeccCCcccEEEEcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000055 2307 ---NV-------RPMESCLCFSSHAMDVSYITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2307 ---~i-------~p~~s~~t~~gH~~~V~afSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
.. ....+...+.||.++|..+++. .++|+++ |.|++|++|++.. ..|+..| .|.+.|+||+|+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSS---SMDKTVRLWh~~~--~~CL~~F-~HndfVTcVaFn 418 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSS---SMDKTVRLWHPGR--KECLKVF-SHNDFVTCVAFN 418 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEec---cccccEEeecCCC--cceeeEE-ecCCeeEEEEec
Confidence 00 0002234477999999864443 4566666 4999999999975 6788887 599999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEccc--
Q 000055 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIPK-- 2451 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~~-- 2451 (2548)
|.| .+++++|+-||.||||++. ..+.+.- ......++.+.+.|||++ +|+.+|.+++|++..
T Consensus 419 PvD------DryFiSGSLD~KvRiWsI~---d~~Vv~W-----~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 419 PVD------DRYFISGSLDGKVRLWSIS---DKKVVDW-----NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred ccC------CCcEeecccccceEEeecC---cCeeEee-----hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe
Confidence 997 8999999999999999963 2333221 122245678899999998 888899999997421
Q ss_pred ---------------CCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceee
Q 000055 2452 ---------------AHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2452 ---------------gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
.|. .|+++.|.|.. .-+++.+.|..|+|+|.++.+++..|++.+.. +..+
T Consensus 485 ~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~-----------~SQ~-- 550 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT-----------SSQI-- 550 (712)
T ss_pred EEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC-----------Ccce--
Confidence 133 79999999854 34666679999999999999999877543322 2223
Q ss_pred cEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000055 2516 GVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2516 ~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
...|+.|| |++++.|..|++|+++..
T Consensus 551 ---~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 551 ---SASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ---eeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 22688899 999999999999998543
No 72
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.2e-17 Score=191.39 Aligned_cols=272 Identities=13% Similarity=0.152 Sum_probs=209.8
Q ss_pred EEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC--CCcEEEE
Q 000055 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL--DGTVCTW 2298 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~--DGtVrVW 2298 (2548)
.+.++.|+++|.++++++.|.+++|||..+++++.++.. +.-.|..++|....+.++.++. |.+|+.-
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s----------kkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS----------KKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec----------ccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 379999999999999999999999999999999988743 1246888999887777777776 8899999
Q ss_pred EcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
++.+.+.+ ..+.||...|.. .+|-+..+++++ .|++|++||++. .++...+. ..+-...+|.|
T Consensus 86 sl~dNkyl--------RYF~GH~~~V~sL~~sP~~d~FlS~S---~D~tvrLWDlR~--~~cqg~l~--~~~~pi~AfDp 150 (311)
T KOG1446|consen 86 SLHDNKYL--------RYFPGHKKRVNSLSVSPKDDTFLSSS---LDKTVRLWDLRV--KKCQGLLN--LSGRPIAAFDP 150 (311)
T ss_pred EeecCceE--------EEcCCCCceEEEEEecCCCCeEEecc---cCCeEEeeEecC--CCCceEEe--cCCCcceeECC
Confidence 99887644 348999999985 789889999985 999999999996 45555543 33445678889
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcccC--
Q 000055 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIPKA-- 2452 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~~g-- 2452 (2548)
. |-++|++...+.|++||+|....|-- .++ ............+-|++||++ +.+..+.+++.|-+.|
T Consensus 151 ~-------GLifA~~~~~~~IkLyD~Rs~dkgPF-~tf-~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 151 E-------GLIFALANGSELIKLYDLRSFDKGPF-TTF-SITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred C-------CcEEEEecCCCeEEEEEecccCCCCc-eeE-ccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence 8 67888888877999999997655433 333 122245566778999999998 5666666777775433
Q ss_pred ------CCCC---EEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccC-CCCceeecEEEEEE
Q 000055 2453 ------HLGS---VTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRG-FGGVVRAGVTDIQV 2522 (2548)
Q Consensus 2453 ------H~~~---VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~G-H~~~V~a~VtsLaf 2522 (2548)
+... -....|.|+++++++|+.||+|.+|++++|..+..+. | +.+ .+.++.|
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~--------------~~~~~----~~~~~~f 283 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR--------------GPNGG----PVSCVRF 283 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec--------------CCCCC----Ccccccc
Confidence 3221 1467799999999999999999999999999998773 3 332 3456689
Q ss_pred cCCeEEEEECCCcEEEEECCCC
Q 000055 2523 VSRGFLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2523 SPdGLaSGS~DGtIrIWDL~sg 2544 (2548)
+|.-..-++++..+.+|-.+..
T Consensus 284 nP~~~mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 284 NPRYAMFVSASSNLVFWLPDED 305 (311)
T ss_pred CCceeeeeecCceEEEEecccc
Confidence 9998555566778999976643
No 73
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.78 E-value=5.8e-18 Score=205.66 Aligned_cols=263 Identities=15% Similarity=0.134 Sum_probs=192.9
Q ss_pred CCccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCC--CCCCCCCCCCeEEEEEccC-CCEEEEEe
Q 000055 2214 PATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAA--NVPPPYALASISALQFDHY-GHRFASAA 2290 (2548)
Q Consensus 2214 ~~tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~gh--s~~~~~H~~~VtsVaFSPd-G~~LaSGS 2290 (2548)
...-++|.+..++|++.|..+++.+.....+|+|.+..+.....++-+-. -....+|...+++.+|+|. ...|+|++
T Consensus 209 l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s 288 (641)
T KOG0772|consen 209 LQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS 288 (641)
T ss_pred cCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec
Confidence 34456788999999999999999999999999998766665555432100 0146789999999999995 56799999
Q ss_pred CCCcEEEEEcCCCcccccccCccceecc--CCc--ccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc-eeeecc
Q 000055 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFS--SHA--MDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR-ASITCH 2365 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~--gH~--~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v-~sl~gH 2365 (2548)
.||++++||++..+... . ..+... +.. ...++|+++|++||+|+ .||.|.+||.......+. ..-.+|
T Consensus 289 ~DgtlRiWdv~~~k~q~-q---Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc---~DGSIQ~W~~~~~~v~p~~~vk~AH 361 (641)
T KOG0772|consen 289 YDGTLRIWDVNNTKSQL-Q---VIKTKPAGGKRVPVTSCAWNRDGKLIAAGC---LDGSIQIWDKGSRTVRPVMKVKDAH 361 (641)
T ss_pred CCCcEEEEecCCchhhe-e---EEeeccCCCcccCceeeecCCCcchhhhcc---cCCceeeeecCCcccccceEeeecc
Confidence 99999999998654211 0 011111 111 12345999999999987 899999999864323333 344478
Q ss_pred CC--CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000055 2366 EG--GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2366 s~--~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
.. .|+||.|+++ |++|++-|.|+++++||+|+.. +++.....
T Consensus 362 ~~g~~Itsi~FS~d-------g~~LlSRg~D~tLKvWDLrq~k--kpL~~~tg--------------------------- 405 (641)
T KOG0772|consen 362 LPGQDITSISFSYD-------GNYLLSRGFDDTLKVWDLRQFK--KPLNVRTG--------------------------- 405 (641)
T ss_pred CCCCceeEEEeccc-------cchhhhccCCCceeeeeccccc--cchhhhcC---------------------------
Confidence 87 9999999999 8999999999999999998632 33322200
Q ss_pred ceEEEcccCCCCCEEEEEEeCCCCEEEEEeC------CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000055 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTGSK------DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~------DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
-...-+-+.++|+|+.++++||.. .|++.+||..+-+.++++. +. .+.|
T Consensus 406 -------L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~------------i~------~aSv 460 (641)
T KOG0772|consen 406 -------LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID------------IS------TASV 460 (641)
T ss_pred -------CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec------------CC------CceE
Confidence 001123457889999999999865 6789999999999998872 11 2457
Q ss_pred EEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000055 2518 TDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2518 tsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
..+.|+|.- |..|++||++++|==++.
T Consensus 461 v~~~WhpkLNQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 461 VRCLWHPKLNQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred EEEeecchhhheeeecCCCceEEEECccc
Confidence 788999976 889999999999865443
No 74
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.78 E-value=1.3e-17 Score=201.29 Aligned_cols=268 Identities=16% Similarity=0.210 Sum_probs=203.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCC---ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD---KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg---~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
|+++..+...+++.||+. |.|+|||+... ..+..+.++. ...-|+++...|||+.|++|+.-.++.||
T Consensus 422 VcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~--------rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLN--------RDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred EEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccC--------cccceeeeEecCCCceEEeccccceeeee
Confidence 788888888889998876 67999999743 2333333322 23679999999999999999999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
|+...... + ....+-.+......+++||.++.+++. .||+|.|||+.. ...++.|+||++++.||.++++
T Consensus 493 DLAapTpr-i---kaeltssapaCyALa~spDakvcFscc---sdGnI~vwDLhn--q~~VrqfqGhtDGascIdis~d- 562 (705)
T KOG0639|consen 493 DLAAPTPR-I---KAELTSSAPACYALAISPDAKVCFSCC---SDGNIAVWDLHN--QTLVRQFQGHTDGASCIDISKD- 562 (705)
T ss_pred eccCCCcc-h---hhhcCCcchhhhhhhcCCccceeeeec---cCCcEEEEEccc--ceeeecccCCCCCceeEEecCC-
Confidence 99865311 1 111112222223335899999988886 799999999986 6789999999999999999998
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc-------
Q 000055 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI------- 2449 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi------- 2449 (2548)
|..|.|||-|.+||-||+| +++.++.. .-...+..+..+|++.+ ++-.++.+.+..+
T Consensus 563 ------GtklWTGGlDntvRcWDlr---egrqlqqh-----dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq 628 (705)
T KOG0639|consen 563 ------GTKLWTGGLDNTVRCWDLR---EGRQLQQH-----DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ 628 (705)
T ss_pred ------CceeecCCCccceeehhhh---hhhhhhhh-----hhhhhheecccCCCccceeeecccCcEEEEecCCcccee
Confidence 7899999999999999976 34443321 11122345677899998 4555555655553
Q ss_pred ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--E
Q 000055 2450 PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2450 ~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--L 2527 (2548)
+.-|++-|.++.|.+.|+++++.+.|..+..|...-|..+...+ . .+.|.++.+|-|. |
T Consensus 629 lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk----------------E---~SsVlsCDIS~ddkyI 689 (705)
T KOG0639|consen 629 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----------------E---SSSVLSCDISFDDKYI 689 (705)
T ss_pred ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc----------------c---cCcceeeeeccCceEE
Confidence 34589999999999999999999999999999999888876542 1 1457788888887 8
Q ss_pred EEEECCCcEEEEEC
Q 000055 2528 LSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2528 aSGS~DGtIrIWDL 2541 (2548)
+|||+|....+|.+
T Consensus 690 VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 690 VTGSGDKKATVYEV 703 (705)
T ss_pred EecCCCcceEEEEE
Confidence 99999999999876
No 75
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.77 E-value=1.8e-17 Score=207.68 Aligned_cols=267 Identities=16% Similarity=0.229 Sum_probs=203.0
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEE-EEEcc-CCCEEEEEeC
Q 000055 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISA-LQFDH-YGHRFASAAL 2291 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vts-VaFSP-dG~~LaSGS~ 2291 (2548)
.+++|. +++++.. ++..++++|.||++++|+-..++.+.+. ...+|.+-|.. +++.+ ++-++++|+.
T Consensus 9 ~l~gH~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~~l~~~--------~~~~~~g~i~~~i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQYLETH--------AFEGPKGFIANSICYAESDKGRLVVGGM 79 (745)
T ss_pred EeccCccchheeEec-CCeEEeecCCCCceeeeeccCcccccce--------ecccCcceeeccceeccccCcceEeecc
Confidence 445554 4555433 4558999999999999997655544322 11224466665 78775 5556999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000055 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
|++|.+|...+.. +..++.+|...|++++.... .+++| |.|.++++|-. +++...+.+|+..|+
T Consensus 80 D~~i~v~~~~~~~--------P~~~LkgH~snVC~ls~~~~~~~iSg---SWD~TakvW~~----~~l~~~l~gH~asVW 144 (745)
T KOG0301|consen 80 DTTIIVFKLSQAE--------PLYTLKGHKSNVCSLSIGEDGTLISG---SWDSTAKVWRI----GELVYSLQGHTASVW 144 (745)
T ss_pred cceEEEEecCCCC--------chhhhhccccceeeeecCCcCceEec---ccccceEEecc----hhhhcccCCcchhee
Confidence 9999999987654 34568999999998764322 36676 59999999987 457778999999999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC-CCCccCCCCCceEEEc
Q 000055 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT-GSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd-Gk~v~s~D~sv~Iwdi 2449 (2548)
++...|.+ .++||+.|++|++|.- ++.++++ .++..++ +.+++-++ +...++.|+.++.|++
T Consensus 145 Av~~l~e~--------~~vTgsaDKtIklWk~-----~~~l~tf---~gHtD~V-RgL~vl~~~~flScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 145 AVASLPEN--------TYVTGSADKTIKLWKG-----GTLLKTF---SGHTDCV-RGLAVLDDSHFLSCSNDGSIRLWDL 207 (745)
T ss_pred eeeecCCC--------cEEeccCcceeeeccC-----Cchhhhh---ccchhhe-eeeEEecCCCeEeecCCceEEEEec
Confidence 99999984 9999999999999982 5666665 2233333 34455555 5558899999999996
Q ss_pred -------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEE
Q 000055 2450 -------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQV 2522 (2548)
Q Consensus 2450 -------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLaf 2522 (2548)
..+|++-|++++..+++..++|+|+|++++||+.. ++.+.+. |. + ..|+++.+
T Consensus 208 ~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~--lP----------t------tsiWsa~~ 267 (745)
T KOG0301|consen 208 DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT--LP----------T------TSIWSAKV 267 (745)
T ss_pred cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe--cC----------c------cceEEEEE
Confidence 45899999999988999999999999999999976 7777662 11 1 23677788
Q ss_pred cCCe-EEEEECCCcEEEEECCC
Q 000055 2523 VSRG-FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2523 SPdG-LaSGS~DGtIrIWDL~s 2543 (2548)
-++| |++|+.||.||||..+.
T Consensus 268 L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 268 LLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eeCCCEEEeccCceEEEEEecc
Confidence 8899 99999999999998764
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.76 E-value=7.6e-18 Score=201.46 Aligned_cols=236 Identities=19% Similarity=0.249 Sum_probs=184.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.|.+++..+++++.|+.+++|+++..+...++.+ |.+.|+++.|......+++|+.|.+|+.||+.
T Consensus 222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG----------HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~ 291 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG----------HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ 291 (459)
T ss_pred cceeeecCCCceEEeecCCCceeeeeccchhhhhhhcc----------cccceeeehhhccccceeeccccchhhhhhhh
Confidence 48889999999999999999999999999988888743 67999999999887779999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
...+.+.. . ......+|.+ .+..++++- .|++|++||.+. ..++..+..+. .|+++..+++
T Consensus 292 k~~C~kt~-l-----~~S~cnDI~~---~~~~~~SgH---~DkkvRfwD~Rs--~~~~~sv~~gg-~vtSl~ls~~---- 352 (459)
T KOG0288|consen 292 KAYCSKTV-L-----PGSQCNDIVC---SISDVISGH---FDKKVRFWDIRS--ADKTRSVPLGG-RVTSLDLSMD---- 352 (459)
T ss_pred hhheeccc-c-----ccccccceEe---cceeeeecc---cccceEEEeccC--CceeeEeecCc-ceeeEeeccC----
Confidence 76554321 0 1122334442 245566653 899999999987 56777776655 9999999988
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEE
Q 000055 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIS 2461 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLa 2461 (2548)
+..+.+++.|.++.+.|+|. ......+ +..|. ..+|+ .+.+.
T Consensus 353 ---g~~lLsssRDdtl~viDlRt---~eI~~~~----------------sA~g~--------------k~asD--wtrvv 394 (459)
T KOG0288|consen 353 ---GLELLSSSRDDTLKVIDLRT---KEIRQTF----------------SAEGF--------------KCASD--WTRVV 394 (459)
T ss_pred ---CeEEeeecCCCceeeeeccc---ccEEEEe----------------ecccc--------------ccccc--cceeE
Confidence 67888889999999999764 2332232 11110 12333 78999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEE
Q 000055 2462 TVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLI 2539 (2548)
Q Consensus 2462 fSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIW 2539 (2548)
|+|++.|+++||.||.|+||++.++++...+. ..+.+ +.|++++|+|.| +++++.++.+.+|
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~-------------~s~s~---~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS-------------LSTSN---AAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEec-------------cCCCC---cceEEEEEcCCCchhhcccCCcceEec
Confidence 99999999999999999999999999998773 12222 368899999999 9999999999999
Q ss_pred E
Q 000055 2540 Q 2540 (2548)
Q Consensus 2540 D 2540 (2548)
.
T Consensus 459 ~ 459 (459)
T KOG0288|consen 459 T 459 (459)
T ss_pred C
Confidence 4
No 77
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=4.9e-18 Score=211.06 Aligned_cols=236 Identities=19% Similarity=0.290 Sum_probs=189.0
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCcee--EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccc
Q 000055 2229 PLRPFFLVGSSNTHIYLWEFGKDKAT--ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l--~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i 2306 (2548)
|.++||+|||.||.|++|+....... ..+. .+...|.+.|.++....+++.|++++.|-+|++|+...+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~------asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-- 106 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYI------ASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-- 106 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchh------hhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--
Confidence 57789999999999999998754321 1111 0233477999999999999999999999999999998663
Q ss_pred ccccCccceeccCCcccEEEE---cCCCCEEEEEeccCCCCeEEEEECCCCCCCc--------ceeee-ccCCCeEEEEE
Q 000055 2307 NVRPMESCLCFSSHAMDVSYI---TSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--------RASIT-CHEGGARSISV 2374 (2548)
Q Consensus 2307 ~i~p~~s~~t~~gH~~~V~af---SpdGslLATgG~SS~DGtVrIWDl~t~~~k~--------v~sl~-gHs~~VtSLaf 2374 (2548)
.....++..|.+.|.|+ -++..++|+|| -|+.|.+||+.+...+. ...+. |+..+|.+++.
T Consensus 107 ----~~c~stir~H~DYVkcla~~ak~~~lvaSgG---LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 107 ----TFCMSTIRTHKDYVKCLAYIAKNNELVASGG---LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred ----chhHhhhhcccchheeeeecccCceeEEecC---CCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 11344578899988874 44777889988 89999999998642222 22333 78899999998
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000055 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
++. +..+++||..+.+++||- .+++.+..+ .||.
T Consensus 180 N~t-------~t~ivsGgtek~lr~wDp---rt~~kimkL------------------------------------rGHT 213 (735)
T KOG0308|consen 180 NQT-------GTIIVSGGTEKDLRLWDP---RTCKKIMKL------------------------------------RGHT 213 (735)
T ss_pred CCc-------ceEEEecCcccceEEecc---ccccceeee------------------------------------eccc
Confidence 887 789999999999999994 455555454 7999
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEEC
Q 000055 2455 GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG 2532 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~ 2532 (2548)
.-|.++..++||+.+++||.||+|++||+...+++.++ .-|... |+.+..+|+- +.+|+.
T Consensus 214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~--------------~vH~e~----VWaL~~~~sf~~vYsG~r 275 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY--------------IVHKEG----VWALQSSPSFTHVYSGGR 275 (735)
T ss_pred cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE--------------EeccCc----eEEEeeCCCcceEEecCC
Confidence 99999999999999999999999999999999999887 556654 4556777776 899999
Q ss_pred CCcEEEEECCC
Q 000055 2533 DGSVKLIQLED 2543 (2548)
Q Consensus 2533 DGtIrIWDL~s 2543 (2548)
||.|..=|+.+
T Consensus 276 d~~i~~Tdl~n 286 (735)
T KOG0308|consen 276 DGNIYRTDLRN 286 (735)
T ss_pred CCcEEecccCC
Confidence 99999888876
No 78
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=3.3e-17 Score=205.81 Aligned_cols=280 Identities=19% Similarity=0.261 Sum_probs=211.1
Q ss_pred EEEEEEcCCCC---EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000055 2222 TRAFSSHPLRP---FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~---~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
+..+++-|++. .|+. -.++++.+|.++...... ......+++...+|...|.+++++.+...+++|+ .+.+++|
T Consensus 323 iks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~-p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiW 399 (888)
T KOG0306|consen 323 IKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTS-PEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIW 399 (888)
T ss_pred eeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCC-ccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEE
Confidence 66777766543 3333 677888888877511110 1112223345678899999999998887777765 5799999
Q ss_pred EcCCCcccccccCccceeccCCcccEE-EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVS-YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~-afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+..+.+++... ... ..++ +|-|.++++++|+ ..|.+.++|+.. ...+..+++|.+.+++++..|+
T Consensus 400 n~~t~kciRTi--------~~~-y~l~~~Fvpgd~~Iv~G~---k~Gel~vfdlaS--~~l~Eti~AHdgaIWsi~~~pD 465 (888)
T KOG0306|consen 400 NRDTLKCIRTI--------TCG-YILASKFVPGDRYIVLGT---KNGELQVFDLAS--ASLVETIRAHDGAIWSISLSPD 465 (888)
T ss_pred EccCcceeEEe--------ccc-cEEEEEecCCCceEEEec---cCCceEEEEeeh--hhhhhhhhccccceeeeeecCC
Confidence 99988876432 222 2222 4889999999987 899999999976 5678888899999999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCcccc--Cceee--ee-cCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc-
Q 000055 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIAT--GKTKK--HK-HSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI- 2449 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~T--Gk~l~--tl-~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi- 2449 (2548)
+..+++||.|.+|++||+..... |...+ .+ +.....-.....++.+||||++ ++--|+++++|.+
T Consensus 466 -------~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD 538 (888)
T KOG0306|consen 466 -------NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD 538 (888)
T ss_pred -------CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec
Confidence 78999999999999999864322 21111 11 1111122334567889999999 7778999988863
Q ss_pred -------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEE
Q 000055 2450 -------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQV 2522 (2548)
Q Consensus 2450 -------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLaf 2522 (2548)
+-||.-+|.|+..+||+++++|||.|.+|+||-+.-|.+-+.+ .+|.+ .|+++.|
T Consensus 539 tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~--------------fAHdD----Svm~V~F 600 (888)
T KOG0306|consen 539 TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF--------------FAHDD----SVMSVQF 600 (888)
T ss_pred ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh--------------hcccC----ceeEEEE
Confidence 3599999999999999999999999999999999999987655 67875 4577799
Q ss_pred cCCe--EEEEECCCcEEEEECCC
Q 000055 2523 VSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2523 SPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
-|.. +.|||.||.||-||-+.
T Consensus 601 ~P~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 601 LPKTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred cccceeEEEecCcceEEeechhh
Confidence 9987 88999999999998654
No 79
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=2.4e-17 Score=185.71 Aligned_cols=199 Identities=21% Similarity=0.310 Sum_probs=168.1
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000055 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
.|.++|.+++|+-+|++.++|+.|++|++|+.-.|..+ ++..+|...|.. .+.|...|+++| .|+.|
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li--------ktYsghG~EVlD~~~s~Dnskf~s~G---gDk~v 83 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI--------KTYSGHGHEVLDAALSSDNSKFASCG---GDKAV 83 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeeccccccee--------eeecCCCceeeeccccccccccccCC---CCceE
Confidence 35699999999999999999999999999999877543 458899988874 677888999998 89999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000055 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
.+||+.+ ++..+.+.+|.+.|+.+.|+.. +..+++|+.|.++++||-| ..+-++++.+
T Consensus 84 ~vwDV~T--Gkv~Rr~rgH~aqVNtV~fNee-------sSVv~SgsfD~s~r~wDCR-S~s~ePiQil------------ 141 (307)
T KOG0316|consen 84 QVWDVNT--GKVDRRFRGHLAQVNTVRFNEE-------SSVVASGSFDSSVRLWDCR-SRSFEPIQIL------------ 141 (307)
T ss_pred EEEEccc--CeeeeecccccceeeEEEecCc-------ceEEEeccccceeEEEEcc-cCCCCccchh------------
Confidence 9999987 7899999999999999999988 6799999999999999987 3344444444
Q ss_pred ccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcc
Q 000055 2427 AHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSS 2506 (2548)
Q Consensus 2427 ~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl 2506 (2548)
......|.++.. .+..+++||.||+++.||++.|++...+
T Consensus 142 ------------------------dea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy-------------- 181 (307)
T KOG0316|consen 142 ------------------------DEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDY-------------- 181 (307)
T ss_pred ------------------------hhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeehhh--------------
Confidence 345567888877 5678999999999999999999887533
Q ss_pred cCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000055 2507 RGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2507 ~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
-|| +|+++.|+++| .+.++.|+++++-|-++|.+
T Consensus 182 ~g~------pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 182 FGH------PITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred cCC------cceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 233 47888999999 78899999999999888753
No 80
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.74 E-value=4.6e-18 Score=196.42 Aligned_cols=208 Identities=17% Similarity=0.325 Sum_probs=174.0
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEE
Q 000055 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIW 2349 (2548)
..+-|..|+|||++|++|+.||.|.+|+.-+|+...-........+..+...|.| |+.|...+|+|. .||.|++|
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs---qDGkIKvW 290 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS---QDGKIKVW 290 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC---cCCcEEEE
Confidence 5588999999999999999999999999998864332223333345667777776 888999999985 99999999
Q ss_pred ECCCCCCCcceeee-ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000055 2350 DTLAPPTSSRASIT-CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~-gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
.+++ +.|++.|. +|+.+|+|+.|+.+ +..+.+++.|.+|++.- +++|++++.+
T Consensus 291 ri~t--G~ClRrFdrAHtkGvt~l~FSrD-------~SqiLS~sfD~tvRiHG---lKSGK~LKEf-------------- 344 (508)
T KOG0275|consen 291 RIET--GQCLRRFDRAHTKGVTCLSFSRD-------NSQILSASFDQTVRIHG---LKSGKCLKEF-------------- 344 (508)
T ss_pred EEec--chHHHHhhhhhccCeeEEEEccC-------cchhhcccccceEEEec---cccchhHHHh--------------
Confidence 9988 78888887 89999999999998 67999999999999999 7889998887
Q ss_pred ccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccC
Q 000055 2429 ADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRG 2508 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~G 2508 (2548)
.||.+.|+...|.++|.++++++.||+|+||+.++.+++.+|+. -+
T Consensus 345 ----------------------rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~------------~~ 390 (508)
T KOG0275|consen 345 ----------------------RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP------------LG 390 (508)
T ss_pred ----------------------cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC------------CC
Confidence 89999999999999999999999999999999999999998841 11
Q ss_pred CCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCCcc
Q 000055 2509 FGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2509 H~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg~l 2546 (2548)
.. ..|.++-.-|.. ++.|-..++|.|-++.+...
T Consensus 391 ~d----~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV 427 (508)
T KOG0275|consen 391 TD----YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV 427 (508)
T ss_pred Cc----ccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence 11 335555666665 88999999999988876544
No 81
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=5.6e-17 Score=183.89 Aligned_cols=244 Identities=21% Similarity=0.260 Sum_probs=178.7
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEEcCCCccc
Q 000055 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrVWDl~tgk~i 2306 (2548)
-.|..|||++.|++|+|+....+.....+..+.+ |.++|+.++|.. .|..||+++.||.|.||.-+.+.-.
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-------h~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~ 93 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-------HSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT 93 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecC-------CCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh
Confidence 3588999999999999999987655444444444 569999999965 7999999999999999998877422
Q ss_pred ccccCccceeccCCcccEEE--EcCC--CCEEEEEeccCCCCeEEEEECCCCC-CCcceeeeccCCCeEEEEEccCCCC-
Q 000055 2307 NVRPMESCLCFSSHAMDVSY--ITSS--GSVIAAAGHSSNGINVVVWDTLAPP-TSSRASITCHEGGARSISVFDNDLG- 2380 (2548)
Q Consensus 2307 ~i~p~~s~~t~~gH~~~V~a--fSpd--GslLATgG~SS~DGtVrIWDl~t~~-~k~v~sl~gHs~~VtSLafsP~dlg- 2380 (2548)
+ ...+..|...|.+ +.|. |-.|+++ |.||.|.|.+.+... ........+|.-+|++++|.|....
T Consensus 94 k------~~e~~~h~~SVNsV~wapheygl~Laca---sSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 94 K------AYEHAAHSASVNSVAWAPHEYGLLLACA---SSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred h------hhhhhhhcccceeecccccccceEEEEe---eCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 1 2336677777764 4454 5566666 489999999988642 2234566799999999999998421
Q ss_pred ------CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000055 2381 ------SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2381 ------~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
....-..|++||.|..|+||+.. .++-+.. +.+.+|.
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~---~~~w~~e----------------------------------~~l~~H~ 207 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFD---SDSWKLE----------------------------------RTLEGHK 207 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecC---Ccchhhh----------------------------------hhhhhcc
Confidence 11122479999999999999943 2211110 1247899
Q ss_pred CCEEEEEEeCCC----CEEEEEeCCCcEEEEECCCC--cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--
Q 000055 2455 GSVTRISTVPNT----SLFLTGSKDGDVKLWDAKAA--QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-- 2526 (2548)
Q Consensus 2455 ~~VtsLafSPdG----~~LaSGS~DGtIrIWDl~Tg--ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-- 2526 (2548)
+.|+.++|.|.- .+++++|.||+|.||..+.. +-..++ +... ...++.+.||..|
T Consensus 208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl-------------l~~f----~~~~w~vSWS~sGn~ 270 (299)
T KOG1332|consen 208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL-------------LEEF----PDVVWRVSWSLSGNI 270 (299)
T ss_pred hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc-------------cccC----CcceEEEEEeccccE
Confidence 999999999953 68999999999999987621 111111 1111 1457888999999
Q ss_pred EEEEECCCcEEEEECC
Q 000055 2527 FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2527 LaSGS~DGtIrIWDL~ 2542 (2548)
|+.+++|+.|++|.-.
T Consensus 271 LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 271 LAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEecCCcEEEEEEeC
Confidence 7888999999999864
No 82
>PTZ00420 coronin; Provisional
Probab=99.74 E-value=3.3e-16 Score=204.39 Aligned_cols=211 Identities=14% Similarity=0.229 Sum_probs=147.4
Q ss_pred EEEEEEcCC-CCEEEEEECCCeEEEEEcCCCce-eEEEeccCCCCCCCCCCCCCeEEEEEccCCCE-EEEEeCCCcEEEE
Q 000055 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKA-TATYGVLPAANVPPPYALASISALQFDHYGHR-FASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg~~-l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~-LaSGS~DGtVrVW 2298 (2548)
|.+++|+|+ +.+|++|+.||+|+|||+.++.. ...+.... ....+|...|.+++|+|++.. +++|+.||+|++|
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~---~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQ---CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccce---EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 799999997 78999999999999999986432 11110000 011346689999999998875 5799999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
|+++++... .+. |...|. .|+++|++|++++ .|+.|+|||++. ++.+..+.+|.+.+.+..+..
T Consensus 154 Dl~tg~~~~--------~i~-~~~~V~SlswspdG~lLat~s---~D~~IrIwD~Rs--g~~i~tl~gH~g~~~s~~v~~ 219 (568)
T PTZ00420 154 DIENEKRAF--------QIN-MPKKLSSLKWNIKGNLLSGTC---VGKHMHIIDPRK--QEIASSFHIHDGGKNTKNIWI 219 (568)
T ss_pred ECCCCcEEE--------EEe-cCCcEEEEEECCCCCEEEEEe---cCCEEEEEECCC--CcEEEEEecccCCceeEEEEe
Confidence 999875321 122 334454 4899999999886 899999999987 677788999998765544332
Q ss_pred CCCCCCCCCCEEEEEeCCC----cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000055 2377 NDLGSGSVSPLIVTGGKGG----DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DG----tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
.. .++.+.+++++|.|+ .|+|||+|.. ++.+.... ...
T Consensus 220 ~~--fs~d~~~IlTtG~d~~~~R~VkLWDlr~~--~~pl~~~~----------------------------------ld~ 261 (568)
T PTZ00420 220 DG--LGGDDNYILSTGFSKNNMREMKLWDLKNT--TSALVTMS----------------------------------IDN 261 (568)
T ss_pred ee--EcCCCCEEEEEEcCCCCccEEEEEECCCC--CCceEEEE----------------------------------ecC
Confidence 10 001166888888774 7999997642 23332220 022
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 000055 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge 2487 (2548)
+.+.+......++|.++++|+.|++|++|++..+.
T Consensus 262 ~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 262 ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 33344444445568999999999999999998764
No 83
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.73 E-value=3.6e-16 Score=185.35 Aligned_cols=228 Identities=16% Similarity=0.217 Sum_probs=171.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.++.|+.+|.+||||+.+|.|+||+..++.....+.. ..+.|.=+.|+|.++.|+.|+.||.|-+|.+.
T Consensus 109 Vt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~----------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip 178 (399)
T KOG0296|consen 109 VTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ----------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP 178 (399)
T ss_pred eEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec----------ccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence 69999999999999999999999999999987777631 12678889999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec---------------
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC--------------- 2364 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g--------------- 2364 (2548)
.+. ..+.+.||..++.+ |.|+|+.++++. .||+|++||+.+ +.+++.+.+
T Consensus 179 ~~~--------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy---~dgti~~Wn~kt--g~p~~~~~~~e~~~~~~~~~~~~~ 245 (399)
T KOG0296|consen 179 SQA--------LCKVMSGHNSPCTCGEFIPDGKRILTGY---DDGTIIVWNPKT--GQPLHKITQAEGLELPCISLNLAG 245 (399)
T ss_pred Ccc--------eeeEecCCCCCcccccccCCCceEEEEe---cCceEEEEecCC--CceeEEecccccCcCCcccccccc
Confidence 653 23458899999986 999999999985 899999999986 444443331
Q ss_pred ------------------------------------cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccC
Q 000055 2365 ------------------------------------HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATG 2408 (2548)
Q Consensus 2365 ------------------------------------Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TG 2408 (2548)
+...+.||.+.|. ++.-++.++|+.||+|.|||+ +..
T Consensus 246 ~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~----ss~lpL~A~G~vdG~i~iyD~---a~~ 318 (399)
T KOG0296|consen 246 STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS----SSKLPLAACGSVDGTIAIYDL---AAS 318 (399)
T ss_pred ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc----ccccchhhcccccceEEEEec---ccc
Confidence 1111112222222 223348899999999999994 333
Q ss_pred ceeeeecCCCCCCCccccccccCCC-CCCccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q 000055 2409 KTKKHKHSDRGGSSINTCAHADAQT-GSGSKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVK 2479 (2548)
Q Consensus 2409 k~l~tl~~~~~~s~~~~~~vafSpd-Gk~v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIr 2479 (2548)
+..... .+... ...+.|-++ -.+.+..++.+++||. +.||...|.+++++|++++++|+|.|++.+
T Consensus 319 ~~R~~c----~he~~-V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~ 393 (399)
T KOG0296|consen 319 TLRHIC----EHEDG-VTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTAL 393 (399)
T ss_pred hhheec----cCCCc-eEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEE
Confidence 332222 11122 223334442 3337888999999984 468999999999999999999999999999
Q ss_pred EEECC
Q 000055 2480 LWDAK 2484 (2548)
Q Consensus 2480 IWDl~ 2484 (2548)
||++.
T Consensus 394 VF~v~ 398 (399)
T KOG0296|consen 394 VFEVP 398 (399)
T ss_pred EEecC
Confidence 99874
No 84
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.73 E-value=6.6e-17 Score=196.60 Aligned_cols=253 Identities=18% Similarity=0.178 Sum_probs=184.1
Q ss_pred CCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC
Q 000055 2263 ANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN 2342 (2548)
Q Consensus 2263 hs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~ 2342 (2548)
|.+...+|+..|+++++.|.|.+|++|+.|.+|++||+..... ..+.+..++....|......|++.|..|++.. .
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda-s~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs---g 234 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA-SMRSFRQLQPCETHQINSLQYSVTGDQILVVS---G 234 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccc-cchhhhccCcccccccceeeecCCCCeEEEEe---c
Confidence 3334556789999999999999999999999999999975432 12233444445667777777999988777664 5
Q ss_pred CCeEEEEECCCCC-------CCcc---eeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceee
Q 000055 2343 GINVVVWDTLAPP-------TSSR---ASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKK 2412 (2548)
Q Consensus 2343 DGtVrIWDl~t~~-------~k~v---~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~ 2412 (2548)
....+++|-.... .+.+ ..-+||...++|.+|+|.+ ...++|++.||++|+||+.... +.++
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~------k~~FlT~s~DgtlRiWdv~~~k--~q~q 306 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN------KEEFLTCSYDGTLRIWDVNNTK--SQLQ 306 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc------ccceEEecCCCcEEEEecCCch--hhee
Confidence 6788999865210 0111 2334899999999999996 7799999999999999985433 3333
Q ss_pred eec-CCCCCCCccccccccCCCCCC--ccCCCCCceEEEc-----------ccCCCC--CEEEEEEeCCCCEEEEEeCCC
Q 000055 2413 HKH-SDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI-----------PKAHLG--SVTRISTVPNTSLFLTGSKDG 2476 (2548)
Q Consensus 2413 tl~-~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi-----------~~gH~~--~VtsLafSPdG~~LaSGS~DG 2476 (2548)
.+. ..........+.++|++||+. .+..|+.+.+|+. -.+|.. .|+||+|+++|++|++-|.|+
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD 386 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC
Confidence 332 122334455677899999998 6678999999983 357877 999999999999999999999
Q ss_pred cEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEE------CCCcEEEEECCC
Q 000055 2477 DVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCG------GDGSVKLIQLED 2543 (2548)
Q Consensus 2477 tIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS------~DGtIrIWDL~s 2543 (2548)
++++||++. .+++.+..+. ... -.-++++|||+. |+||. ..|++.+||-.+
T Consensus 387 tLKvWDLrq~kkpL~~~tgL--------------~t~--~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLNVRTGL--------------PTP--FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ceeeeeccccccchhhhcCC--------------Ccc--CCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 999999986 4555544211 111 112566899999 66774 357888888654
No 85
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.73 E-value=1.7e-16 Score=184.49 Aligned_cols=239 Identities=15% Similarity=0.229 Sum_probs=176.5
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000055 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
|.+++|+| ...++++|+.||+||+|+++. |..... . ...|.++|.+++|+.||.++++|+.||.+++||
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k--a-------~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK--A-------QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccch--h-------hhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 68899999 455666899999999999986 443332 1 123569999999999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE---EcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000055 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY---ITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a---fSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
+.+++... +..|...|.+ +.+- -..|+|| |.|++|+.||++. ..++.++.- .+.+.++..-
T Consensus 101 L~S~Q~~~---------v~~Hd~pvkt~~wv~~~~~~cl~TG---SWDKTlKfWD~R~--~~pv~t~~L-PeRvYa~Dv~ 165 (347)
T KOG0647|consen 101 LASGQVSQ---------VAAHDAPVKTCHWVPGMNYQCLVTG---SWDKTLKFWDTRS--SNPVATLQL-PERVYAADVL 165 (347)
T ss_pred ccCCCeee---------eeecccceeEEEEecCCCcceeEec---ccccceeecccCC--CCeeeeeec-cceeeehhcc
Confidence 99886332 5567776653 4332 2467776 5999999999996 556666542 4566766654
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000055 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
. ++++.+..++.|.+|+++. +...... +...-.-
T Consensus 166 ~---------pm~vVata~r~i~vynL~n---~~te~k~----------------------------------~~SpLk~ 199 (347)
T KOG0647|consen 166 Y---------PMAVVATAERHIAVYNLEN---PPTEFKR----------------------------------IESPLKW 199 (347)
T ss_pred C---------ceeEEEecCCcEEEEEcCC---Ccchhhh----------------------------------hcCcccc
Confidence 3 4899999999999999753 1111110 0011334
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCC------ceeecEEEEEEcCCe--E
Q 000055 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGG------VVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~------~V~a~VtsLafSPdG--L 2527 (2548)
.++||+..++.+-.+.|+.+|.+.|..+..+.....|. |+.|+. .| ..|.+|+|+|.. |
T Consensus 200 Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFt------------FkCHR~~~~~~~~V-YaVNsi~FhP~hgtl 266 (347)
T KOG0647|consen 200 QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFT------------FKCHRSTNSVNDDV-YAVNSIAFHPVHGTL 266 (347)
T ss_pred eeeEEEEEecCCceEeeeecceEEEEecCCCCccCcee------------EEEeccCCCCCCce-EEecceEeecccceE
Confidence 67899999998888999999999999998875444331 345542 24 457999999976 9
Q ss_pred EEEECCCcEEEEECCC
Q 000055 2528 LSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2528 aSGS~DGtIrIWDL~s 2543 (2548)
+|+|.||++.+||-+.
T Consensus 267 vTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 267 VTAGSDGTFSFWDKDA 282 (347)
T ss_pred EEecCCceEEEecchh
Confidence 9999999999999653
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=7.1e-16 Score=181.26 Aligned_cols=234 Identities=15% Similarity=0.139 Sum_probs=177.4
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEEC
Q 000055 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl 2351 (2548)
+.|.++.|+++|..+++++.|-++++||...++...... ...+...+.+|....+.++.+.. -.|.+|+.-++
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~------skkyG~~~~~Fth~~~~~i~sSt-k~d~tIryLsl 87 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN------SKKYGVDLACFTHHSNTVIHSST-KEDDTIRYLSL 87 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee------cccccccEEEEecCCceEEEccC-CCCCceEEEEe
Confidence 789999999999999999999999999999887554321 12233344455444444443321 15889999999
Q ss_pred CCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000055 2352 LAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2352 ~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
.. .+.++.|.||...|++++.+|. +..+++++.|++|++||+|. .+|...+ .......+++.
T Consensus 88 ~d--NkylRYF~GH~~~V~sL~~sP~-------~d~FlS~S~D~tvrLWDlR~---~~cqg~l------~~~~~pi~AfD 149 (311)
T KOG1446|consen 88 HD--NKYLRYFPGHKKRVNSLSVSPK-------DDTFLSSSLDKTVRLWDLRV---KKCQGLL------NLSGRPIAAFD 149 (311)
T ss_pred ec--CceEEEcCCCCceEEEEEecCC-------CCeEEecccCCeEEeeEecC---CCCceEE------ecCCCcceeEC
Confidence 76 7899999999999999999998 68999999999999999872 3333222 11234567899
Q ss_pred CCCCC--ccCCCCCceEEEccc-------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000055 2432 QTGSG--SKPGDQNGMLWYIPK-------------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2432 pdGk~--v~s~D~sv~Iwdi~~-------------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
|.|-+ ++.....++++|+.. +-....+.|.|+|+|++++.+...+.+++.|.-+|..+.++.
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs--- 226 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS--- 226 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe---
Confidence 99998 455555789998421 335578899999999999999999999999999999988883
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000055 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
++.+.-... .+..|+|++ +++|+.||+|.+|+++++.
T Consensus 227 -----------~~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 227 -----------GYPNAGNLP-LSATFTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred -----------eccCCCCcc-eeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 111111011 244799999 7899999999999998874
No 87
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=3.8e-17 Score=194.67 Aligned_cols=250 Identities=18% Similarity=0.269 Sum_probs=183.3
Q ss_pred cccccccCCccccCCCCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEE
Q 000055 2199 LGWETQDDFEDYVDPPATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISA 2276 (2548)
Q Consensus 2199 i~W~~~ed~e~~v~p~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vts 2276 (2548)
+.|....+.. +....++.+|. |..+.|+||.++|++++.|..+.+||..+|.....|.. +|...+.+
T Consensus 249 iiw~v~~d~~--~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~---------~~~~S~~s 317 (519)
T KOG0293|consen 249 IIWIVVYDVH--FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS---------GLGFSVSS 317 (519)
T ss_pred EEEEEecCcc--eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc---------CcCCCcce
Confidence 3454433332 33455666665 89999999999999999999999999999998888732 14578999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCc-ccEE--EEcCCCCEEEEEeccCCCCeEEEEECCC
Q 000055 2277 LQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHA-MDVS--YITSSGSVIAAAGHSSNGINVVVWDTLA 2353 (2548)
Q Consensus 2277 VaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~-~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t 2353 (2548)
++|.|||..+++|+.|+++..||++..... +..+.. ..|. ++++||+.+++.+ .|..|++++..+
T Consensus 318 c~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~---------~W~gvr~~~v~dlait~Dgk~vl~v~---~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 318 CAWCPDGFRFVTGSPDRTIIMWDLDGNILG---------NWEGVRDPKVHDLAITYDGKYVLLVT---VDKKIRLYNREA 385 (519)
T ss_pred eEEccCCceeEecCCCCcEEEecCCcchhh---------cccccccceeEEEEEcCCCcEEEEEe---cccceeeechhh
Confidence 999999999999999999999999854311 133322 2343 4789999998887 899999999875
Q ss_pred CCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC
Q 000055 2354 PPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT 2433 (2548)
Q Consensus 2354 ~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd 2433 (2548)
...+. +.....+|+++..+.+ ++++++.-.+..|++||+ +..+.++.........-..-.+.. .-+
T Consensus 386 --~~dr~-lise~~~its~~iS~d-------~k~~LvnL~~qei~LWDl---~e~~lv~kY~Ghkq~~fiIrSCFg-g~~ 451 (519)
T KOG0293|consen 386 --RVDRG-LISEEQPITSFSISKD-------GKLALVNLQDQEIHLWDL---EENKLVRKYFGHKQGHFIIRSCFG-GGN 451 (519)
T ss_pred --hhhhc-cccccCceeEEEEcCC-------CcEEEEEcccCeeEEeec---chhhHHHHhhcccccceEEEeccC-CCC
Confidence 22222 3345678999999888 789999999999999995 434443333221111111111111 112
Q ss_pred CCC--ccCCCCCceEEE--------cccCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCC
Q 000055 2434 GSG--SKPGDQNGMLWY--------IPKAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2434 Gk~--v~s~D~sv~Iwd--------i~~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~T 2485 (2548)
..+ .++.|+.++||+ ++.||...|++|+|+| +..++|+||.||+||||....
T Consensus 452 ~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 452 DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 222 778899999998 4679999999999999 568899999999999998763
No 88
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=3.7e-16 Score=189.52 Aligned_cols=240 Identities=17% Similarity=0.278 Sum_probs=182.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++.++||+|||+|+.|..|.||+.++.+.+..+. +|.+.|.+++|-...+.+++++.|++|++|+++
T Consensus 205 il~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~----------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK----------GHRGAVSSLAFRKGTSELYSASADRSVKVWSID 274 (479)
T ss_pred eEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc----------ccccceeeeeeecCccceeeeecCCceEEEehh
Confidence 6888888999999999999999999999998887754 366999999999988899999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEEEcC--CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSYITS--SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSp--dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
.... ..++.+|...|..++. -++.+.+|| .|+++++|++. ......+.+|.+.+.|++|-.++
T Consensus 275 ~~s~--------vetlyGHqd~v~~IdaL~reR~vtVGg---rDrT~rlwKi~---eesqlifrg~~~sidcv~~In~~- 339 (479)
T KOG0299|consen 275 QLSY--------VETLYGHQDGVLGIDALSRERCVTVGG---RDRTVRLWKIP---EESQLIFRGGEGSIDCVAFINDE- 339 (479)
T ss_pred HhHH--------HHHHhCCccceeeechhcccceEEecc---ccceeEEEecc---ccceeeeeCCCCCeeeEEEeccc-
Confidence 5532 2347899998887654 334444444 89999999994 45667788999999999998775
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000055 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
.+++|+.||.|.+|+ +.+.+.+.+.....+.. ++. +. -.+..+|++
T Consensus 340 -------HfvsGSdnG~IaLWs---~~KKkplf~~~~AHgv~----------~~~-------------~~-~~~~~Wits 385 (479)
T KOG0299|consen 340 -------HFVSGSDNGSIALWS---LLKKKPLFTSRLAHGVI----------PEL-------------DP-VNGNFWITS 385 (479)
T ss_pred -------ceeeccCCceEEEee---ecccCceeEeecccccc----------CCc-------------cc-cccccceee
Confidence 999999999999999 55556655542111100 000 00 123469999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCC----cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEEC
Q 000055 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAA----QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGG 2532 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tg----ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~ 2532 (2548)
|+..|..+++++|+.+|.|++|-+..| +++..++ +...|++++|+++| ++..|.
T Consensus 386 la~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-------------------~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 386 LAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-------------------LVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred eEecccCceEEecCCCCceEEEEecCCccccceeeecc-------------------cccEEEEEEEccCCCEEEEeccc
Confidence 999999999999999999999999887 3333331 22447888999999 444455
Q ss_pred CCcEEEE
Q 000055 2533 DGSVKLI 2539 (2548)
Q Consensus 2533 DGtIrIW 2539 (2548)
...+--|
T Consensus 447 EhRlGRW 453 (479)
T KOG0299|consen 447 EHRLGRW 453 (479)
T ss_pred cccccee
Confidence 4444333
No 89
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.72 E-value=6e-17 Score=187.40 Aligned_cols=214 Identities=20% Similarity=0.278 Sum_probs=170.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCC------cccc----cccCccceeccCCcccEEE--EcCCCCEEEEE
Q 000055 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVG------GRSN----VRPMESCLCFSSHAMDVSY--ITSSGSVIAAA 2337 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tg------k~i~----i~p~~s~~t~~gH~~~V~a--fSpdGslLATg 2337 (2548)
|.+.+.+.+|++||.+++||+.|..|++.|++.. +... ........++..|...|.+ |.|...+++++
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 6789999999999999999999999999998721 1000 0111234567789988875 89999999998
Q ss_pred eccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCC
Q 000055 2338 GHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSD 2417 (2548)
Q Consensus 2338 G~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~ 2417 (2548)
. .|++|+++|...+..+.....-.....|.++.|+|. |.+|+.|....++++|| +.+.+|...-
T Consensus 191 s---rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs-------GefllvgTdHp~~rlYd---v~T~Qcfvsa--- 254 (430)
T KOG0640|consen 191 S---RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS-------GEFLLVGTDHPTLRLYD---VNTYQCFVSA--- 254 (430)
T ss_pred c---CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC-------CceEEEecCCCceeEEe---ccceeEeeec---
Confidence 4 999999999975322222222234678999999999 89999999999999999 4455554332
Q ss_pred CCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccc
Q 000055 2418 RGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE 2497 (2548)
Q Consensus 2418 ~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs 2497 (2548)
+|+ .+|.+.|++|.+++.|++.+|||.||.|++||--+++++.++.
T Consensus 255 -------------nPd-----------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~---- 300 (430)
T KOG0640|consen 255 -------------NPD-----------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG---- 300 (430)
T ss_pred -------------Ccc-----------------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH----
Confidence 111 5799999999999999999999999999999999999999885
Q ss_pred ccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000055 2498 RHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+.|++ +.|.+..|..+| +++.|.|.++++|.+.++.
T Consensus 301 ---------~AH~g---sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 301 ---------NAHGG---SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ---------hhcCC---ceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 45555 447788999999 8899999999999998874
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=1.5e-16 Score=183.95 Aligned_cols=287 Identities=17% Similarity=0.227 Sum_probs=211.2
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000055 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
.++||. +.-++.....+.+.+++.|.+.+||.+++|.++.+|.+ |.+.|.+|+|++.+.++++++.|+
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G----------H~GSVNsikfh~s~~L~lTaSGD~ 212 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG----------HTGSVNSIKFHNSGLLLLTASGDE 212 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc----------cccceeeEEeccccceEEEccCCc
Confidence 345554 56666666778899999999999999999999999853 679999999999999999999999
Q ss_pred cEEEEEcC----CCcccc---------------cccC-------------ccceeccCCcccEEE--EcCCCCEEEEEec
Q 000055 2294 TVCTWQLE----VGGRSN---------------VRPM-------------ESCLCFSSHAMDVSY--ITSSGSVIAAAGH 2339 (2548)
Q Consensus 2294 tVrVWDl~----tgk~i~---------------i~p~-------------~s~~t~~gH~~~V~a--fSpdGslLATgG~ 2339 (2548)
+..||... ..+... ..+. .+...+.+|...|.+ |-..|+.++++.
T Consensus 213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS- 291 (481)
T KOG0300|consen 213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS- 291 (481)
T ss_pred chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee-
Confidence 99999721 110000 0000 112235677777765 566788999984
Q ss_pred cCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCC
Q 000055 2340 SSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRG 2419 (2548)
Q Consensus 2340 SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~ 2419 (2548)
.|++..+||+++ +..+..+.||....+.++-+|. ..++++.+.|-+.++||+|. .-..+..| .+
T Consensus 292 --WDRTAnlwDVEt--ge~v~~LtGHd~ELtHcstHpt-------QrLVvTsSrDtTFRLWDFRe--aI~sV~VF---QG 355 (481)
T KOG0300|consen 292 --WDRTANLWDVET--GEVVNILTGHDSELTHCSTHPT-------QRLVVTSSRDTTFRLWDFRE--AIQSVAVF---QG 355 (481)
T ss_pred --ccccceeeeecc--CceeccccCcchhccccccCCc-------ceEEEEeccCceeEeccchh--hcceeeee---cc
Confidence 999999999987 7899999999999999998988 67999999999999999872 11222222 11
Q ss_pred CCCccccccccCCCCCC-ccCCCCCceEEEccc--------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 000055 2420 GSSINTCAHADAQTGSG-SKPGDQNGMLWYIPK--------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2420 ~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~~--------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~ 2490 (2548)
+ ....+...|..+.+. .++.|.++++|++.. .-.++++.++.+..+.+++.--....|++||++ |..+.
T Consensus 356 H-tdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~Rla 433 (481)
T KOG0300|consen 356 H-TDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLA 433 (481)
T ss_pred c-ccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecC-CCccc
Confidence 1 222345566777666 666777888888532 235677788888777788877777888888886 44444
Q ss_pred EecccccccccccCcccCCCCceeecEEEEEEcCCe----EEEEECCCcEEEEECCCC
Q 000055 2491 HWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG----FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2491 tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG----LaSGS~DGtIrIWDL~sg 2544 (2548)
.++ +. .-+||. -+|++++|..+. |++||.|..+.-|++...
T Consensus 434 RlP----rt-----sRqgHr----RMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 434 RLP----RT-----SRQGHR----RMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCC----cc-----cccccc----eeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 442 11 136776 456788998776 999999999999998654
No 91
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.71 E-value=7.6e-17 Score=196.27 Aligned_cols=248 Identities=17% Similarity=0.207 Sum_probs=188.2
Q ss_pred ccccccccCCccccCCCCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeE
Q 000055 2198 ALGWETQDDFEDYVDPPATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS 2275 (2548)
Q Consensus 2198 ~i~W~~~ed~e~~v~p~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vt 2275 (2548)
...|+..++. .+.+++.+|. |+.++|+++|..+++++.|+.+++||+++|++...+.. ...++
T Consensus 239 vklW~vy~~~----~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-----------~~~~~ 303 (503)
T KOG0282|consen 239 VKLWNVYDDR----RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-----------DKVPT 303 (503)
T ss_pred EEEEEEecCc----ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-----------CCCce
Confidence 3455544433 3456677776 89999999999999999999999999999999999853 25689
Q ss_pred EEEEccCC-CEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECC
Q 000055 2276 ALQFDHYG-HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2548)
Q Consensus 2276 sVaFSPdG-~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~ 2352 (2548)
++.|+|++ +.|++|+.|+.|+.||+++++.+ +.+..|-..|.. |-++|+.++++ |+|++++||+.+
T Consensus 304 cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv--------qeYd~hLg~i~~i~F~~~g~rFiss---SDdks~riWe~~ 372 (503)
T KOG0282|consen 304 CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV--------QEYDRHLGAILDITFVDEGRRFISS---SDDKSVRIWENR 372 (503)
T ss_pred eeecCCCCCcEEEEecCCCcEEEEeccchHHH--------HHHHhhhhheeeeEEccCCceEeee---ccCccEEEEEcC
Confidence 99999988 89999999999999999998633 235566666653 66899999997 499999999998
Q ss_pred CCCCCcce-eeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000055 2353 APPTSSRA-SITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2353 t~~~k~v~-sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
.+ ..+. ....+.....++..+|+ +++++.-+.|..|.++.+...-.....+.+ .+.......+.+.||
T Consensus 373 ~~--v~ik~i~~~~~hsmP~~~~~P~-------~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f--eGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 373 IP--VPIKNIADPEMHTMPCLTLHPN-------GKWFAAQSMDNYIAIFSTVPPFRLNKKKRF--EGHSVAGYSCQVDFS 441 (503)
T ss_pred CC--ccchhhcchhhccCcceecCCC-------CCeehhhccCceEEEEecccccccCHhhhh--cceeccCceeeEEEc
Confidence 63 2222 22233456678888888 789999999999999996421111111111 122233445678999
Q ss_pred CCCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEE
Q 000055 2432 QTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWD 2482 (2548)
Q Consensus 2432 pdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWD 2482 (2548)
|||++ .+..++.+.+|+. .++|+++|..+.|+|.. ..+||++.||.|++||
T Consensus 442 pDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 442 PDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999 5555666778873 56899999999999964 7899999999999996
No 92
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=1.1e-16 Score=199.16 Aligned_cols=219 Identities=17% Similarity=0.290 Sum_probs=173.3
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEE-ccCCCEEEE
Q 000055 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQF-DHYGHRFAS 2288 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaF-SPdG~~LaS 2288 (2548)
.+.++.|. +..+....+|+.|++++.|.+|++|+...+. +..+++. |.+-|.|++. -++...+|+
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~----------H~DYVkcla~~ak~~~lvaS 135 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT----------HKDYVKCLAYIAKNNELVAS 135 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhc----------ccchheeeeecccCceeEEe
Confidence 44555555 5555555788899999999999999998763 4444432 6699999999 778999999
Q ss_pred EeCCCcEEEEEcCCCcccccccC--ccceecc-CCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee
Q 000055 2289 AALDGTVCTWQLEVGGRSNVRPM--ESCLCFS-SHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2548)
Q Consensus 2289 GS~DGtVrVWDl~tgk~i~i~p~--~s~~t~~-gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~ 2363 (2548)
||-|+.|.+||++++.......+ .+..... |+...|.+ .++.|..|++|| .++.+++||.++ .+.+..++
T Consensus 136 gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGg---tek~lr~wDprt--~~kimkLr 210 (735)
T KOG0308|consen 136 GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGG---TEKDLRLWDPRT--CKKIMKLR 210 (735)
T ss_pred cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecC---cccceEEecccc--ccceeeee
Confidence 99999999999998732111111 1112223 77788876 466777888887 789999999998 67788888
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000055 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
||++.|.++..+++ |..++++++||+|++||++ ..+|+.++
T Consensus 211 GHTdNVr~ll~~dD-------Gt~~ls~sSDgtIrlWdLg---qQrCl~T~----------------------------- 251 (735)
T KOG0308|consen 211 GHTDNVRVLLVNDD-------GTRLLSASSDGTIRLWDLG---QQRCLATY----------------------------- 251 (735)
T ss_pred ccccceEEEEEcCC-------CCeEeecCCCceEEeeecc---ccceeeeE-----------------------------
Confidence 99999999999988 8999999999999999954 46777776
Q ss_pred ceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CcEEEEec
Q 000055 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA-AQLVYHWS 2493 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T-gell~tL~ 2493 (2548)
..|...|+++..+|+-..+++|+.||.|..=|+++ .+....++
T Consensus 252 -------~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick 295 (735)
T KOG0308|consen 252 -------IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK 295 (735)
T ss_pred -------EeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec
Confidence 67999999999999999999999999999999988 34444443
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.71 E-value=6.3e-16 Score=185.80 Aligned_cols=244 Identities=17% Similarity=0.207 Sum_probs=188.5
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000055 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
...+.||. ++.+.+||+...+++++.|-.|+||...........+ .|.++|+.+..+|.|.||++++.
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~----------~h~~~V~~ls~h~tgeYllsAs~ 323 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSR----------PHEEPVTGLSLHPTGEYLLSASN 323 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccc----------cccccceeeeeccCCcEEEEecC
Confidence 34566766 8999999999999999999999999988766544443 26699999999999999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000055 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
||+..+.|++++....... .......+. .|+|||.+|.+|. .|+.|+|||+.. ...+..|.+|+++|
T Consensus 324 d~~w~Fsd~~~g~~lt~vs------~~~s~v~~ts~~fHpDgLifgtgt---~d~~vkiwdlks--~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 324 DGTWAFSDISSGSQLTVVS------DETSDVEYTSAAFHPDGLIFGTGT---PDGVVKIWDLKS--QTNVAKFPGHTGPV 392 (506)
T ss_pred CceEEEEEccCCcEEEEEe------eccccceeEEeeEcCCceEEeccC---CCceEEEEEcCC--ccccccCCCCCCce
Confidence 9999999999987543211 111112233 3999999999985 899999999987 45788999999999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc
Q 000055 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi 2449 (2548)
..++|+.+ |-+|++++.|+.|++||+|.... .+++.
T Consensus 393 k~i~FsEN-------GY~Lat~add~~V~lwDLRKl~n---~kt~~---------------------------------- 428 (506)
T KOG0289|consen 393 KAISFSEN-------GYWLATAADDGSVKLWDLRKLKN---FKTIQ---------------------------------- 428 (506)
T ss_pred eEEEeccC-------ceEEEEEecCCeEEEEEehhhcc---cceee----------------------------------
Confidence 99999988 78999999999999999885432 22220
Q ss_pred ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc--EEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-
Q 000055 2450 PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ--LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG- 2526 (2548)
Q Consensus 2450 ~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge--ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG- 2526 (2548)
......|.++.|++.|.+|+.+|.|=.|++++-.+.+ .+.++ .-|.+ ..+.+.|..+.
T Consensus 429 -l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~--------------~~~sg----~st~v~Fg~~aq 489 (506)
T KOG0289|consen 429 -LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL--------------ADHSG----LSTGVRFGEHAQ 489 (506)
T ss_pred -ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh--------------hhccc----ccceeeecccce
Confidence 1122378999999999999999888777777754433 33333 33432 23455787766
Q ss_pred -EEEEECCCcEEEEEC
Q 000055 2527 -FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2527 -LaSGS~DGtIrIWDL 2541 (2548)
++++|.|..++++.+
T Consensus 490 ~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 490 YLASTSMDAILRLYAL 505 (506)
T ss_pred EEeeccchhheEEeec
Confidence 889999999999875
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.71 E-value=3.1e-16 Score=188.45 Aligned_cols=233 Identities=19% Similarity=0.229 Sum_probs=187.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++...|..+.+++|+.|..+.++|...++.+.++++ |...|+.+.|+++...+++++.|..|++|.+.
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~G----------h~kki~~v~~~~~~~~v~~aSad~~i~vws~~ 291 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKG----------HTKKITSVKFHKDLDTVITASADEIIRVWSVP 291 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhhhhhhccC----------cceEEEEEEeccchhheeecCCcceEEeeccc
Confidence 57777778778999999999999999999988888743 66899999999999999999999999999987
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec--cCCCeEEEEEccC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC--HEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g--Hs~~VtSLafsP~ 2377 (2548)
...+. .....|...|.. ..|.|.+|+++. +|++..+.|+++ +..+..... ..-.+++.+|+|+
T Consensus 292 ~~s~~--------~~~~~h~~~V~~ls~h~tgeYllsAs---~d~~w~Fsd~~~--g~~lt~vs~~~s~v~~ts~~fHpD 358 (506)
T KOG0289|consen 292 LSSEP--------TSSRPHEEPVTGLSLHPTGEYLLSAS---NDGTWAFSDISS--GSQLTVVSDETSDVEYTSAAFHPD 358 (506)
T ss_pred cccCc--------cccccccccceeeeeccCCcEEEEec---CCceEEEEEccC--CcEEEEEeeccccceeEEeeEcCC
Confidence 65422 235678888885 689999999984 999999999987 444333322 2235899999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000055 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
|.++.+|..||.|+|||+ .++..+..| .+|+++|
T Consensus 359 -------gLifgtgt~d~~vkiwdl---ks~~~~a~F------------------------------------pght~~v 392 (506)
T KOG0289|consen 359 -------GLIFGTGTPDGVVKIWDL---KSQTNVAKF------------------------------------PGHTGPV 392 (506)
T ss_pred -------ceEEeccCCCceEEEEEc---CCccccccC------------------------------------CCCCCce
Confidence 789999999999999994 444444443 7899999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCc
Q 000055 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGS 2535 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGt 2535 (2548)
+.++|+.+|-+|++++.|+.|++||++.-+..+++.. ... ..|.++.|++.| |+.+|.|=.
T Consensus 393 k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l------------~~~-----~~v~s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 393 KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL------------DEK-----KEVNSLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred eEEEeccCceEEEEEecCCeEEEEEehhhcccceeec------------ccc-----ccceeEEEcCCCCeEEeecceeE
Confidence 9999999999999999999999999998877776631 111 125677899999 777777766
Q ss_pred EEEEE
Q 000055 2536 VKLIQ 2540 (2548)
Q Consensus 2536 IrIWD 2540 (2548)
|++++
T Consensus 456 Vy~~~ 460 (506)
T KOG0289|consen 456 VYICK 460 (506)
T ss_pred EEEEe
Confidence 66665
No 95
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.71 E-value=6.2e-17 Score=193.79 Aligned_cols=240 Identities=18% Similarity=0.238 Sum_probs=182.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+..+.|-++...|++|+.|..|++|+...++. .....+.+ ..+.|+++.|.++++.+++++.|+.+++|+++
T Consensus 178 v~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-~~~~tLaG-------s~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 178 VHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-ELISTLAG-------SLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred cceeEEccCcchhhhcchhhhhhhhhcccchh-hhhhhhhc-------cCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 47778889989999999999999999886651 11122222 34789999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
..+.. .++.+|...|++ +......+++| |.|++|++||+.. ..|..++- -...+..|...+.
T Consensus 250 ~~r~~--------~TLsGHtdkVt~ak~~~~~~~vVsg---s~DRtiK~WDl~k--~~C~kt~l-~~S~cnDI~~~~~-- 313 (459)
T KOG0288|consen 250 SLRLR--------HTLSGHTDKVTAAKFKLSHSRVVSG---SADRTIKLWDLQK--AYCSKTVL-PGSQCNDIVCSIS-- 313 (459)
T ss_pred chhhh--------hhhcccccceeeehhhccccceeec---cccchhhhhhhhh--hheecccc-ccccccceEecce--
Confidence 77532 358899999987 43333446666 4999999999975 45544432 2345566665543
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000055 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
.+++|-.|++|++||+| ++.+.+.. ..+ +.|++
T Consensus 314 -------~~~SgH~DkkvRfwD~R---s~~~~~sv------------------------------------~~g-g~vtS 346 (459)
T KOG0288|consen 314 -------DVISGHFDKKVRFWDIR---SADKTRSV------------------------------------PLG-GRVTS 346 (459)
T ss_pred -------eeeecccccceEEEecc---CCceeeEe------------------------------------ecC-cceee
Confidence 78899999999999965 34444443 223 48999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEE
Q 000055 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVK 2537 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIr 2537 (2548)
+..+++|..|.+.+.|.++.+.|+++.+..+++... .| ..+|. ++.+.|||++ +++||.||.|+
T Consensus 347 l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~----g~----k~asD------wtrvvfSpd~~YvaAGS~dgsv~ 412 (459)
T KOG0288|consen 347 LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE----GF----KCASD------WTRVVFSPDGSYVAAGSADGSVY 412 (459)
T ss_pred EeeccCCeEEeeecCCCceeeeecccccEEEEeecc----cc----ccccc------cceeEECCCCceeeeccCCCcEE
Confidence 999999999999999999999999999998877311 11 12332 4556899999 88999999999
Q ss_pred EEECCCCcc
Q 000055 2538 LIQLEDYQH 2546 (2548)
Q Consensus 2538 IWDL~sg~l 2546 (2548)
||++.++.+
T Consensus 413 iW~v~tgKl 421 (459)
T KOG0288|consen 413 IWSVFTGKL 421 (459)
T ss_pred EEEccCceE
Confidence 999998865
No 96
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=1.7e-16 Score=200.58 Aligned_cols=247 Identities=17% Similarity=0.263 Sum_probs=180.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEc
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl 2300 (2548)
..+++..++-..++.++. ..+.||.+.............+. +... .-.+..|.|+. +.++|||++.+|.|.+||+
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~--kqn~-~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKT--KQNK-FYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeeccc--ccce-eeehhhcccccchhhhheeecCCCcEEEEec
Confidence 356666677777777655 35777777643211111100000 1111 13567788886 5889999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000055 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
..... ......+..|...+.+ |++ ..++|++|+ .||+|++||++. .+...++.+....|+.|.|+|.
T Consensus 118 nk~~r-----nk~l~~f~EH~Rs~~~ldfh~tep~iliSGS---QDg~vK~~DlR~--~~S~~t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 118 NKSIR-----NKLLTVFNEHERSANKLDFHSTEPNILISGS---QDGTVKCWDLRS--KKSKSTFRSNSESIRDVKFSPG 187 (839)
T ss_pred Ccccc-----chhhhHhhhhccceeeeeeccCCccEEEecC---CCceEEEEeeec--ccccccccccchhhhceeeccC
Confidence 85321 1223457888887764 544 446777764 999999999997 5677788888899999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000055 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
. +..++++...|.+++||+|+ ..++...+ .+|.++|
T Consensus 188 ~------~~~F~s~~dsG~lqlWDlRq--p~r~~~k~------------------------------------~AH~GpV 223 (839)
T KOG0269|consen 188 Y------GNKFASIHDSGYLQLWDLRQ--PDRCEKKL------------------------------------TAHNGPV 223 (839)
T ss_pred C------CceEEEecCCceEEEeeccC--chhHHHHh------------------------------------hcccCce
Confidence 6 88999999999999999985 23343343 7899999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcE--EEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEE-
Q 000055 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQL--VYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCG- 2531 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgel--l~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS- 2531 (2548)
.|+.|+|++.+|||||.|++|+|||+.+++. +.++ ++ -+.|..++|-|.. |++|+
T Consensus 224 ~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI------nT-------------iapv~rVkWRP~~~~hLAtcsm 284 (839)
T KOG0269|consen 224 LCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI------NT-------------IAPVGRVKWRPARSYHLATCSM 284 (839)
T ss_pred EEEeecCCCceeeecCCCccEEEEeccCCCccceeEE------ee-------------cceeeeeeeccCccchhhhhhc
Confidence 9999999999999999999999999986543 2222 11 1668899999998 88775
Q ss_pred -CCCcEEEEECCCCc
Q 000055 2532 -GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2532 -~DGtIrIWDL~sg~ 2545 (2548)
.|-.|+|||+....
T Consensus 285 v~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 285 VVDTSVHVWDVRRPY 299 (839)
T ss_pred cccceEEEEeecccc
Confidence 58899999997653
No 97
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=1.2e-15 Score=178.17 Aligned_cols=260 Identities=15% Similarity=0.185 Sum_probs=189.9
Q ss_pred EEEEECCCeEEEEEcCCCc------eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccc
Q 000055 2234 FLVGSSNTHIYLWEFGKDK------ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2234 LASGS~DGsVrLWDl~tg~------~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
+++|+....|.=+++.-.. +..++... +....|.+.|++++.+ +.++|+|+.|-+|++||+......
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~l----F~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql- 76 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPL----FAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL- 76 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeecc----ccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh-
Confidence 5667777766666654221 11111110 1234578999999986 999999999999999999866433
Q ss_pred cccCccceeccCCcccEEE--EcCCC--CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCC
Q 000055 2308 VRPMESCLCFSSHAMDVSY--ITSSG--SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGS 2383 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~a--fSpdG--slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs 2383 (2548)
..+..|.+.|.+ |.+.- +.+++|. +||.|.+|+... ...+..+++|.+.|+.++.+|.
T Consensus 77 -------g~ll~HagsitaL~F~~~~S~shLlS~s---dDG~i~iw~~~~--W~~~~slK~H~~~Vt~lsiHPS------ 138 (362)
T KOG0294|consen 77 -------GILLSHAGSITALKFYPPLSKSHLLSGS---DDGHIIIWRVGS--WELLKSLKAHKGQVTDLSIHPS------ 138 (362)
T ss_pred -------cceeccccceEEEEecCCcchhheeeec---CCCcEEEEEcCC--eEEeeeecccccccceeEecCC------
Confidence 235677888876 44433 2677764 999999999975 7889999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEcccCC-----C--C
Q 000055 2384 VSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYIPKAH-----L--G 2455 (2548)
Q Consensus 2384 ~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~~gH-----~--~ 2455 (2548)
+++-++.|.|+.+++|| +-+|+.-...+.. .....+.|+|.|.. +....+.+-+|.+..++ . .
T Consensus 139 -~KLALsVg~D~~lr~WN---LV~Gr~a~v~~L~-----~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~ 209 (362)
T KOG0294|consen 139 -GKLALSVGGDQVLRTWN---LVRGRVAFVLNLK-----NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPK 209 (362)
T ss_pred -CceEEEEcCCceeeeeh---hhcCccceeeccC-----CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccc
Confidence 78999999999999999 4455544333111 11233778899885 66777778888754332 2 3
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC
Q 000055 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD 2533 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D 2533 (2548)
.+.++.|. ++..|++|+.|+.|++||..+..+...+ .+|.++|.+.+. --.|++ |+|+|.|
T Consensus 210 r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~--------------~AH~~RVK~i~~--~~~~~~~~lvTaSSD 272 (362)
T KOG0294|consen 210 RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF--------------LAHENRVKDIAS--YTNPEHEYLVTASSD 272 (362)
T ss_pred cceeeeec-CCceEEEecCCceEEEeccCCCccceee--------------ecchhheeeeEE--EecCCceEEEEeccC
Confidence 46677665 6778899999999999999987777655 789888865421 234556 8999999
Q ss_pred CcEEEEECCCC
Q 000055 2534 GSVKLIQLEDY 2544 (2548)
Q Consensus 2534 GtIrIWDL~sg 2544 (2548)
|.|+|||++..
T Consensus 273 G~I~vWd~~~~ 283 (362)
T KOG0294|consen 273 GFIKVWDIDME 283 (362)
T ss_pred ceEEEEEcccc
Confidence 99999999765
No 98
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=7.1e-16 Score=188.38 Aligned_cols=193 Identities=20% Similarity=0.285 Sum_probs=151.1
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 000055 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWD 2299 (2548)
+..+.|+|++. .+++|+.|+.+++||+.+......+ .+|.+.|.+.+|+| +++.++||+.||+|++||
T Consensus 113 v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l----------~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL----------SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred eeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe----------cCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 78888999765 5667899999999999988753233 34679999999999 467999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000055 2300 LEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
++.... . ..--.|..+|- .+-|.|.+|+++| ...|++||+.++ ++.+..+..|...|+|+.+..+
T Consensus 183 tR~~~~-~-------v~elnhg~pVe~vl~lpsgs~iasAg----Gn~vkVWDl~~G-~qll~~~~~H~KtVTcL~l~s~ 249 (487)
T KOG0310|consen 183 TRSLTS-R-------VVELNHGCPVESVLALPSGSLIASAG----GNSVKVWDLTTG-GQLLTSMFNHNKTVTCLRLASD 249 (487)
T ss_pred eccCCc-e-------eEEecCCCceeeEEEcCCCCEEEEcC----CCeEEEEEecCC-ceehhhhhcccceEEEEEeecC
Confidence 986521 1 11224555554 4678899999986 679999999864 4555556569999999999886
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000055 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
+..|++||-||.|++|| ..+.+.+..+ .-.++|
T Consensus 250 -------~~rLlS~sLD~~VKVfd---~t~~Kvv~s~-------------------------------------~~~~pv 282 (487)
T KOG0310|consen 250 -------STRLLSGSLDRHVKVFD---TTNYKVVHSW-------------------------------------KYPGPV 282 (487)
T ss_pred -------CceEeecccccceEEEE---ccceEEEEee-------------------------------------ecccce
Confidence 68999999999999999 4444544443 256799
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000055 2458 TRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.+++.+|+++.++.|..||.+.+=+..
T Consensus 283 Lsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 283 LSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eeEEecCCCceEEEecccceeeeehhh
Confidence 999999999999999999998876443
No 99
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.69 E-value=2.6e-15 Score=191.25 Aligned_cols=295 Identities=18% Similarity=0.212 Sum_probs=218.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCE-EEEEeCCCcEEEEEc
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHR-FASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~-LaSGS~DGtVrVWDl 2300 (2548)
++++.-+|--..+|.|..+|+|.|+++..++.+.+|+.- .+.|+++.|.-||+. +++|+..|.+.+||+
T Consensus 205 IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d----------~g~VtslSFrtDG~p~las~~~~G~m~~wDL 274 (910)
T KOG1539|consen 205 ITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD----------WGRVTSLSFRTDGNPLLASGRSNGDMAFWDL 274 (910)
T ss_pred eeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc----------ccceeEEEeccCCCeeEEeccCCceEEEEEc
Confidence 577877788889999999999999999999999998631 288999999999865 567777799999999
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCCeEEEEEcc
Q 000055 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~VtSLafsP 2376 (2548)
+..+... .....|...|.. +-+....+++++ .|+.+++|-.+++++. .++.-.||..+..++.|..
T Consensus 275 e~kkl~~-------v~~nah~~sv~~~~fl~~epVl~ta~---~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~ 344 (910)
T KOG1539|consen 275 EKKKLIN-------VTRNAHYGSVTGATFLPGEPVLVTAG---ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYG 344 (910)
T ss_pred CCCeeee-------eeeccccCCcccceecCCCceEeecc---CCCceeEEEeeCCCCcchheeeccCCCCCchheeeec
Confidence 9665433 234567666553 667778888887 7898888876655553 4566679999999999986
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceee-------------------------eec----------------
Q 000055 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKK-------------------------HKH---------------- 2415 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~-------------------------tl~---------------- 2415 (2548)
.+ +..+.+++.|++.+.+++.+-...+.+. .+.
T Consensus 345 ~~------g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h 418 (910)
T KOG1539|consen 345 SQ------GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAH 418 (910)
T ss_pred cC------cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEe
Confidence 64 7788899999988888874300000000 000
Q ss_pred -----------------------CCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc-----------cCCCCCEEE
Q 000055 2416 -----------------------SDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP-----------KAHLGSVTR 2459 (2548)
Q Consensus 2416 -----------------------~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~-----------~gH~~~Vts 2459 (2548)
..-........+++.++-|+. ++...+.+.++++. ..|.++|++
T Consensus 419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~g 498 (910)
T KOG1539|consen 419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTG 498 (910)
T ss_pred cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeE
Confidence 000001123345566677776 77788888888853 368999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccc--------cccc-------------------ccCcccCCCCc
Q 000055 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE--------RHTF-------------------LQPSSRGFGGV 2512 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs--------~hsf-------------------l~~tl~GH~~~ 2512 (2548)
++.+-.++.+++++.||.+++||..++.++..+.-.+. ...+ +.+.|.||++.
T Consensus 499 la~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr 578 (910)
T KOG1539|consen 499 LAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNR 578 (910)
T ss_pred EEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccc
Confidence 99999999999999999999999998887666642111 0000 13447899876
Q ss_pred eeecEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000055 2513 VRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2513 V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
| ++++||||| |++++.|++||+||+.++.+
T Consensus 579 i----td~~FS~DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 579 I----TDMTFSPDGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred e----eeeEeCCCCcEEEEeecCCcEEEEeccCcce
Confidence 6 667999999 99999999999999998754
No 100
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.69 E-value=8.8e-17 Score=182.18 Aligned_cols=234 Identities=15% Similarity=0.187 Sum_probs=179.2
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000055 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
++++|. |.....+.+-..-|+++.|=+.+|||.-+|..+.++. |..-|.+++|+.|.++|+||+.++
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-----------hkhivk~~af~~ds~~lltgg~ek 122 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-----------HKHIVKAVAFSQDSNYLLTGGQEK 122 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-----------hhheeeeEEecccchhhhccchHH
Confidence 566665 5666655666677889999999999999998888773 557899999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000055 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.++++|++..+ .+...+.+|...|.. |....+.|+++. +|++|++||.++ +..++++. -...|++
T Consensus 123 llrvfdln~p~-------App~E~~ghtg~Ir~v~wc~eD~~iLSSa---dd~tVRLWD~rT--gt~v~sL~-~~s~VtS 189 (334)
T KOG0278|consen 123 LLRVFDLNRPK-------APPKEISGHTGGIRTVLWCHEDKCILSSA---DDKTVRLWDHRT--GTEVQSLE-FNSPVTS 189 (334)
T ss_pred HhhhhhccCCC-------CCchhhcCCCCcceeEEEeccCceEEeec---cCCceEEEEecc--CcEEEEEe-cCCCCcc
Confidence 99999998543 334457888887763 555556666653 899999999997 67777775 3678999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc
Q 000055 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI 2449 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi 2449 (2548)
+.+++++ .+++-...+.|.+||. .+-..+++.. -.+........|+... .++.|..++.+|.
T Consensus 190 lEvs~dG--------~ilTia~gssV~Fwda---ksf~~lKs~k-----~P~nV~SASL~P~k~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 190 LEVSQDG--------RILTIAYGSSVKFWDA---KSFGLLKSYK-----MPCNVESASLHPKKEFFVAGGEDFKVYKFDY 253 (334)
T ss_pred eeeccCC--------CEEEEecCceeEEecc---ccccceeecc-----CccccccccccCCCceEEecCcceEEEEEec
Confidence 9999983 5566667889999994 4445555542 2334455667777555 3445555566652
Q ss_pred ---------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000055 2450 ---------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV 2489 (2548)
Q Consensus 2450 ---------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell 2489 (2548)
.++|-++|.||.|+|+|...++||+||+|++|-+..++.-
T Consensus 254 ~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 254 NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 3689999999999999999999999999999998766543
No 101
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=2.8e-15 Score=175.36 Aligned_cols=236 Identities=16% Similarity=0.213 Sum_probs=178.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+..+.|+|.+..|++++.||++++||.........++ |..++.+++|.+ ...+++|+.||.|+.+|++
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-----------~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-----------HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-----------cCCceeeeeccC-CceEEEeccCceEEEEEec
Confidence 5888999999999999999999999999875555543 568999999986 5569999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
++.... +..|...|.+ ..+....+++|| .|++|++||.+. ...+..+.. ...|.++...
T Consensus 84 ~~~~~~---------igth~~~i~ci~~~~~~~~vIsgs---WD~~ik~wD~R~--~~~~~~~d~-~kkVy~~~v~---- 144 (323)
T KOG1036|consen 84 TGNEDQ---------IGTHDEGIRCIEYSYEVGCVISGS---WDKTIKFWDPRN--KVVVGTFDQ-GKKVYCMDVS---- 144 (323)
T ss_pred CCccee---------eccCCCceEEEEeeccCCeEEEcc---cCccEEEEeccc--ccccccccc-CceEEEEecc----
Confidence 886432 5567887776 455566777775 999999999985 233333332 3478888765
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000055 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
++.|+.|+.|..|.+||+|.+......+. ..-.-.++|
T Consensus 145 -----g~~LvVg~~~r~v~iyDLRn~~~~~q~re-------------------------------------S~lkyqtR~ 182 (323)
T KOG1036|consen 145 -----GNRLVVGTSDRKVLIYDLRNLDEPFQRRE-------------------------------------SSLKYQTRC 182 (323)
T ss_pred -----CCEEEEeecCceEEEEEcccccchhhhcc-------------------------------------ccceeEEEE
Confidence 44999999999999999986433221111 224457899
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCc----EEEEecccccccccccCcccCCCC-----ceeecEEEEEEcCCe--EE
Q 000055 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQ----LVYHWSKLHERHTFLQPSSRGFGG-----VVRAGVTDIQVVSRG--FL 2528 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tge----ll~tL~~~Hs~hsfl~~tl~GH~~-----~V~a~VtsLafSPdG--La 2528 (2548)
|++-|++.=++.+|-||.|.+=.+...+ ....| +.|.. .+--+|.+|+|+|-. |+
T Consensus 183 v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaF--------------kCHr~~~~~~~~~yPVNai~Fhp~~~tfa 248 (323)
T KOG1036|consen 183 VALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF--------------KCHRLSEKDTEIIYPVNAIAFHPIHGTFA 248 (323)
T ss_pred EEEecCCCceEEEeecceEEEEccCCchHHhhhceeE--------------EeeecccCCceEEEEeceeEeccccceEE
Confidence 9999999999999999999886665542 22222 33321 222568999999986 99
Q ss_pred EEECCCcEEEEECCCC
Q 000055 2529 SCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2529 SGS~DGtIrIWDL~sg 2544 (2548)
|||.||.|.+||+.+.
T Consensus 249 TgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 249 TGGSDGIVNIWDLFNR 264 (323)
T ss_pred ecCCCceEEEccCcch
Confidence 9999999999999775
No 102
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.68 E-value=1.9e-15 Score=173.23 Aligned_cols=238 Identities=16% Similarity=0.210 Sum_probs=177.7
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-
Q 000055 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD- 2292 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D- 2292 (2548)
+..+|+ |.|+..+.+.+.++||+.|.++++||+.+|+++.+++. ...|..+.|+.+|++++.+..+
T Consensus 47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-----------~~~Vk~~~F~~~gn~~l~~tD~~ 115 (327)
T KOG0643|consen 47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-----------NSPVKRVDFSFGGNLILASTDKQ 115 (327)
T ss_pred eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-----------CCeeEEEeeccCCcEEEEEehhh
Confidence 445555 78888889999999999999999999999999999863 2679999999999988777544
Q ss_pred ----CcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC
Q 000055 2293 ----GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2293 ----GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
+.|.++|++..... +...++...+..+...+.. |+|-++.|++|. .||.|.+||.+++ .+.+...+-|+
T Consensus 116 mg~~~~v~~fdi~~~~~~-~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh---e~G~is~~da~~g-~~~v~s~~~h~ 190 (327)
T KOG0643|consen 116 MGYTCFVSVFDIRDDSSD-IDSEEPYLKIPTPDSKITSALWGPLGETIIAGH---EDGSISIYDARTG-KELVDSDEEHS 190 (327)
T ss_pred cCcceEEEEEEccCChhh-hcccCceEEecCCccceeeeeecccCCEEEEec---CCCcEEEEEcccC-ceeeechhhhc
Confidence 68999999854321 1111223334555555553 899999999987 8999999999873 45677777899
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCC--
Q 000055 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQN-- 2443 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~s-- 2443 (2548)
..|+.+.++++ ..++++|+.|.+-++||++ +-.+++++.. ......++++|.-.. +.++...
T Consensus 191 ~~Ind~q~s~d-------~T~FiT~s~Dttakl~D~~---tl~v~Kty~t-----e~PvN~aaisP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 191 SKINDLQFSRD-------RTYFITGSKDTTAKLVDVR---TLEVLKTYTT-----ERPVNTAAISPLLDHVILGGGQEAM 255 (327)
T ss_pred cccccccccCC-------cceEEecccCccceeeecc---ceeeEEEeee-----cccccceecccccceEEecCCceee
Confidence 99999999999 6899999999999999955 4455555421 122334556664333 1111111
Q ss_pred -------------ceEEE--------cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000055 2444 -------------GMLWY--------IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2444 -------------v~Iwd--------i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.+.++ -.++|-++|++|+|+|+|+..++|++||.|++.-..
T Consensus 256 dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 256 DVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred eeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 12222 136899999999999999999999999999997654
No 103
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=2.5e-16 Score=199.14 Aligned_cols=228 Identities=23% Similarity=0.362 Sum_probs=168.3
Q ss_pred CCCEEEEEECCCeEEEEEcCC---CceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCcc
Q 000055 2230 LRPFFLVGSSNTHIYLWEFGK---DKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGR 2305 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~t---g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl~tgk~ 2305 (2548)
+.++|||++..|.|.+||+.. ...+..|.+ |...|.++.|++ ..++|++|+.||+|++||++..+.
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E----------H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE----------HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhh----------hccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 467899999999999999987 333334432 568999999998 578899999999999999987653
Q ss_pred cccccCccceeccCCcccEE--EEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCC
Q 000055 2306 SNVRPMESCLCFSSHAMDVS--YITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSG 2382 (2548)
Q Consensus 2306 i~i~p~~s~~t~~gH~~~V~--afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~g 2382 (2548)
.. ++.+....|. .|+| .+..|+++. +.|.+++||++.+ .++...+.+|.+.|.|+.|+|+
T Consensus 169 ~~--------t~~~nSESiRDV~fsp~~~~~F~s~~---dsG~lqlWDlRqp-~r~~~k~~AH~GpV~c~nwhPn----- 231 (839)
T KOG0269|consen 169 KS--------TFRSNSESIRDVKFSPGYGNKFASIH---DSGYLQLWDLRQP-DRCEKKLTAHNGPVLCLNWHPN----- 231 (839)
T ss_pred cc--------cccccchhhhceeeccCCCceEEEec---CCceEEEeeccCc-hhHHHHhhcccCceEEEeecCC-----
Confidence 22 2334443333 2555 467888875 8899999999975 6788899999999999999997
Q ss_pred CCCCEEEEEeCCCcEEEEeCCccccCce--eeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000055 2383 SVSPLIVTGGKGGDVGIHDFRYIATGKT--KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2383 s~g~lLVSGS~DGtVrLWDLR~l~TGk~--l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
..+|+|||.|+.|+|||+. +++. +.++ .-..+|.+|
T Consensus 232 --r~~lATGGRDK~vkiWd~t---~~~~~~~~tI-------------------------------------nTiapv~rV 269 (839)
T KOG0269|consen 232 --REWLATGGRDKMVKIWDMT---DSRAKPKHTI-------------------------------------NTIAPVGRV 269 (839)
T ss_pred --CceeeecCCCccEEEEecc---CCCccceeEE-------------------------------------eecceeeee
Confidence 7899999999999999953 2222 1111 123588999
Q ss_pred EEeCCC-CEEEEEeC--CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCC
Q 000055 2461 STVPNT-SLFLTGSK--DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDG 2534 (2548)
Q Consensus 2461 afSPdG-~~LaSGS~--DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DG 2534 (2548)
+|-|.. ..|++++. |-.|+|||++..-.-+ + ++..|.+. ++.++|.... +.+|+.||
T Consensus 270 kWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~--------~-----t~~eH~~~----vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 270 KWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY--------A-----TFLEHTDS----VTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred eeccCccchhhhhhccccceEEEEeeccccccc--------e-----eeeccCcc----ccceeccCCCceeeEeecCcc
Confidence 999965 45666654 8899999998433222 1 24667654 4566887633 88999999
Q ss_pred cEEEEECCC
Q 000055 2535 SVKLIQLED 2543 (2548)
Q Consensus 2535 tIrIWDL~s 2543 (2548)
+|.--.+++
T Consensus 333 tv~qh~~kn 341 (839)
T KOG0269|consen 333 TVLQHLFKN 341 (839)
T ss_pred HHHHhhhhc
Confidence 886554443
No 104
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.8e-15 Score=191.15 Aligned_cols=232 Identities=17% Similarity=0.271 Sum_probs=182.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000055 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.-+.|+ ..+.||+|.. ..|++|+..++........ +.+.|+++.|+++|..|++|..+|.|.+||..+
T Consensus 181 nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~----------~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~ 248 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSF----------GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE 248 (484)
T ss_pred hHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEec----------CCCceEEEEECCCCCEEEEeecCCeEEEEehhh
Confidence 445666 3445666543 4799999998885444322 138899999999999999999999999999987
Q ss_pred CcccccccCccceeccC-CcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000055 2303 GGRSNVRPMESCLCFSS-HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~g-H~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
.+... .+.+ |...|.++..++..+.+|+ .|+.|.++|++.. ......+.+|...|..+.|+++
T Consensus 249 ~k~~~--------~~~~~h~~rvg~laW~~~~lssGs---r~~~I~~~dvR~~-~~~~~~~~~H~qeVCgLkws~d---- 312 (484)
T KOG0305|consen 249 QKKTR--------TLRGSHASRVGSLAWNSSVLSSGS---RDGKILNHDVRIS-QHVVSTLQGHRQEVCGLKWSPD---- 312 (484)
T ss_pred ccccc--------cccCCcCceeEEEeccCceEEEec---CCCcEEEEEEecc-hhhhhhhhcccceeeeeEECCC----
Confidence 65432 2455 8889988877777777774 9999999999974 2233358899999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEE
Q 000055 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIS 2461 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLa 2461 (2548)
+.++++|+.|+.+.|||. .....+..+ ..|.++|.+++
T Consensus 313 ---~~~lASGgnDN~~~Iwd~---~~~~p~~~~------------------------------------~~H~aAVKA~a 350 (484)
T KOG0305|consen 313 ---GNQLASGGNDNVVFIWDG---LSPEPKFTF------------------------------------TEHTAAVKALA 350 (484)
T ss_pred ---CCeeccCCCccceEeccC---CCccccEEE------------------------------------eccceeeeEee
Confidence 789999999999999994 233444443 67999999999
Q ss_pred EeC-CCCEEEEEeC--CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE--ECCC
Q 000055 2462 TVP-NTSLFLTGSK--DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC--GGDG 2534 (2548)
Q Consensus 2462 fSP-dG~~LaSGS~--DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG--S~DG 2534 (2548)
|+| ...+||+|+. |+.|++||..+|+.+..+. .| +.|.++.|++.. |+++ -.++
T Consensus 351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-------------tg------sQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-------------TG------SQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred eCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-------------cC------CceeeEEEcCCCCEEEEecCCCCC
Confidence 999 5678999854 9999999999999998661 11 347889999998 6643 4577
Q ss_pred cEEEEECCC
Q 000055 2535 SVKLIQLED 2543 (2548)
Q Consensus 2535 tIrIWDL~s 2543 (2548)
.|.||+.++
T Consensus 412 ~i~lw~~ps 420 (484)
T KOG0305|consen 412 QITLWKYPS 420 (484)
T ss_pred cEEEEeccc
Confidence 899999976
No 105
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.67 E-value=1.2e-15 Score=181.41 Aligned_cols=205 Identities=17% Similarity=0.269 Sum_probs=156.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEec----------cCCCC---CCCCCCCCCeEEEEEccCCCEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGV----------LPAAN---VPPPYALASISALQFDHYGHRF 2286 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~----------l~ghs---~~~~~H~~~VtsVaFSPdG~~L 2286 (2548)
|-+++..++|..+++|+.|.++.||+..+.. .+..... ..+.. ....+|++.|.+|.|++ ...+
T Consensus 196 V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~ 274 (423)
T KOG0313|consen 196 VDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVI 274 (423)
T ss_pred eeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCce
Confidence 5788888999999999999999999933211 0000000 00000 12457899999999998 6679
Q ss_pred EEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc-ceeee
Q 000055 2287 ASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS-RASIT 2363 (2548)
Q Consensus 2287 aSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~-v~sl~ 2363 (2548)
++++.|.+|+.||+++++.... +.+. ..+. .+++..++|++|+ .|..+++||.+++.+.. .+.+.
T Consensus 275 yS~SwDHTIk~WDletg~~~~~--------~~~~-ksl~~i~~~~~~~Ll~~gs---sdr~irl~DPR~~~gs~v~~s~~ 342 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKST--------LTTN-KSLNCISYSPLSKLLASGS---SDRHIRLWDPRTGDGSVVSQSLI 342 (423)
T ss_pred EeecccceEEEEEeecccceee--------eecC-cceeEeecccccceeeecC---CCCceeecCCCCCCCceeEEeee
Confidence 9999999999999999875432 1111 1222 3678888999985 89999999999876664 57889
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000055 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
+|...|.++.|+|.+ ..+|++|+.||++++||+|. +...+..+
T Consensus 343 gH~nwVssvkwsp~~------~~~~~S~S~D~t~klWDvRS--~k~plydI----------------------------- 385 (423)
T KOG0313|consen 343 GHKNWVSSVKWSPTN------EFQLVSGSYDNTVKLWDVRS--TKAPLYDI----------------------------- 385 (423)
T ss_pred cchhhhhheecCCCC------ceEEEEEecCCeEEEEEecc--CCCcceee-----------------------------
Confidence 999999999999996 78999999999999999873 11233333
Q ss_pred ceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000055 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.+|...|.++.|. ++.++++||.|.+|+|+.-.
T Consensus 386 -------~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 386 -------AGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred -------ccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 6799999999997 56799999999999998643
No 106
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.67 E-value=1.1e-15 Score=190.12 Aligned_cols=240 Identities=18% Similarity=0.265 Sum_probs=190.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc---CCCEEEEEeCCCcEEEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH---YGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP---dG~~LaSGS~DGtVrVW 2298 (2548)
+++++.+|+|++||+|..-|+++||++...+.....+. |...|.|+.|+. ..++||+|+.|.-|.|+
T Consensus 462 ~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA----------HesEilcLeyS~p~~~~kLLASasrdRlIHV~ 531 (1080)
T KOG1408|consen 462 FRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA----------HESEILCLEYSFPVLTNKLLASASRDRLIHVY 531 (1080)
T ss_pred eEEEEECCCcceecccCccCceEEEEehhhhhhhheec----------ccceeEEEeecCchhhhHhhhhccCCceEEEE
Confidence 58888889999999999999999999988776666543 568999999985 36789999999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEE--EcCCC--CEEEEEeccCCCCeEEEEECCCCCCCcceeeec----cCCCeE
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSG--SVIAAAGHSSNGINVVVWDTLAPPTSSRASITC----HEGGAR 2370 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdG--slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g----Hs~~Vt 2370 (2548)
|+... +...+++.+|...|++ |-.+| ...+++| .|+.|. ++.....+.-.....+ ....+.
T Consensus 532 Dv~rn-------y~l~qtld~HSssITsvKFa~~gln~~MiscG---ADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 532 DVKRN-------YDLVQTLDGHSSSITSVKFACNGLNRKMISCG---ADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred ecccc-------cchhhhhcccccceeEEEEeecCCceEEEecc---Cchhhh-eehhccccCceeccccccccccceEE
Confidence 99743 2345678899998885 43344 4566766 677665 3443211111111111 234678
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000055 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
.+++.|. ..++++++.|+.|+||| +.+|+..+.++. .
T Consensus 601 Dm~Vdp~-------~k~v~t~cQDrnirif~---i~sgKq~k~FKg---------------------------------s 637 (1080)
T KOG1408|consen 601 DMAVDPT-------SKLVVTVCQDRNIRIFD---IESGKQVKSFKG---------------------------------S 637 (1080)
T ss_pred EeeeCCC-------cceEEEEecccceEEEe---ccccceeeeecc---------------------------------c
Confidence 8999888 78999999999999999 778888888721 1
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE
Q 000055 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL 2528 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La 2528 (2548)
.+|++....+..+|.|.|++|.+.|.++.++|..+|+++.+. .||+. .|+.+.|.+|- |+
T Consensus 638 ~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m--------------~GHsE----~VTG~kF~nDCkHlI 699 (1080)
T KOG1408|consen 638 RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM--------------TGHSE----AVTGVKFLNDCKHLI 699 (1080)
T ss_pred ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh--------------cCcch----heeeeeecccchhhe
Confidence 568888999999999999999999999999999999999866 68874 45777999998 99
Q ss_pred EEECCCcEEEEECCC
Q 000055 2529 SCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2529 SGS~DGtIrIWDL~s 2543 (2548)
+.+.||.|.||.++.
T Consensus 700 SvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 700 SVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecCCceEEEEECch
Confidence 999999999999974
No 107
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.8e-16 Score=186.68 Aligned_cols=225 Identities=20% Similarity=0.338 Sum_probs=172.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.|++-+|.|.+|+.|+..|.+++|.+.+|..+..+.. |...|+++.|+-||.+|+||+.||.|.+|++.
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a----------HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA----------HYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHh----------hccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 68899999999999999999999999999998877633 77999999999999999999999999999974
Q ss_pred CCc-ccccccCccceeccCCcccEEE--E--cCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000055 2302 VGG-RSNVRPMESCLCFSSHAMDVSY--I--TSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2302 tgk-~i~i~p~~s~~t~~gH~~~V~a--f--SpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
.-- ........+...+..|.-.|+. + .+-...++|++ .|.++++||+.. +..+.++. -...+.+++..|
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS---~D~t~k~wdlS~--g~LLlti~-fp~si~av~lDp 227 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS---EDRTIKLWDLSL--GVLLLTIT-FPSSIKAVALDP 227 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec---CCceEEEEEecc--ceeeEEEe-cCCcceeEEEcc
Confidence 321 0011133455678999998885 2 33345788875 999999999976 45555553 467899999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC-
Q 000055 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG- 2455 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~- 2455 (2548)
. ...+..|+.+|.|.+.++-.... +..... .-..+-...-...+.||.+
T Consensus 228 a-------e~~~yiGt~~G~I~~~~~~~~~~-~~~~v~----------------------~k~~~~~~t~~~~~~Gh~~~ 277 (476)
T KOG0646|consen 228 A-------ERVVYIGTEEGKIFQNLLFKLSG-QSAGVN----------------------QKGRHEENTQINVLVGHENE 277 (476)
T ss_pred c-------ccEEEecCCcceEEeeehhcCCc-cccccc----------------------ccccccccceeeeeccccCC
Confidence 9 68999999999999999643221 100000 0001111122334578988
Q ss_pred -CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000055 2456 -SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2456 -~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.|+|++.+-||.+|++|+.||+|+|||+.+.++++++
T Consensus 278 ~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 278 SAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred cceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 9999999999999999999999999999999998877
No 108
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=1.6e-15 Score=195.41 Aligned_cols=239 Identities=13% Similarity=0.080 Sum_probs=169.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCce-----------------------eEEEe-------------------c
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA-----------------------TATYG-------------------V 2259 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~-----------------------l~t~~-------------------~ 2259 (2548)
|+++.|++||+|||+||+||.|+||.+...+. ...-. .
T Consensus 270 Iw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~ 349 (712)
T KOG0283|consen 270 IWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVL 349 (712)
T ss_pred EEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCcccc
Confidence 79999999999999999999999999765100 00000 0
Q ss_pred cCCC-------C-CCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcC
Q 000055 2260 LPAA-------N-VPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS 2329 (2548)
Q Consensus 2260 l~gh-------s-~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp 2329 (2548)
++.. + ....+|.+.|.++.|+.+ ++|++++.|++||+|++....++. .-.|.+-|+| |+|
T Consensus 350 ~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~---------~F~HndfVTcVaFnP 419 (712)
T KOG0283|consen 350 LPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLK---------VFSHNDFVTCVAFNP 419 (712)
T ss_pred CCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceee---------EEecCCeeEEEEecc
Confidence 0000 0 024679999999999965 569999999999999999776553 3368888886 777
Q ss_pred -CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCcccc-
Q 000055 2330 -SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIAT- 2407 (2548)
Q Consensus 2330 -dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~T- 2407 (2548)
|.++|++|+ -|+.|+||++.. ..+.....-..-|++++|.|+ |+..+.|+.+|.+++|+.+.++-
T Consensus 420 vDDryFiSGS---LD~KvRiWsI~d---~~Vv~W~Dl~~lITAvcy~Pd-------Gk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 420 VDDRYFISGS---LDGKVRLWSISD---KKVVDWNDLRDLITAVCYSPD-------GKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred cCCCcEeecc---cccceEEeecCc---CeeEeehhhhhhheeEEeccC-------CceEEEEEeccEEEEEEccCCeEE
Confidence 778999984 999999999964 333344444589999999999 88999999999999999753211
Q ss_pred -CceeeeecCCCCCCCcccccccc---CCCCCCccCCCCCceEEEc--------ccCCC--CCEEEEEEeCCCCEEEEEe
Q 000055 2408 -GKTKKHKHSDRGGSSINTCAHAD---AQTGSGSKPGDQNGMLWYI--------PKAHL--GSVTRISTVPNTSLFLTGS 2473 (2548)
Q Consensus 2408 -Gk~l~tl~~~~~~s~~~~~~vaf---SpdGk~v~s~D~sv~Iwdi--------~~gH~--~~VtsLafSPdG~~LaSGS 2473 (2548)
...+........... .++.+.+ .++..+|.+.|..|+|+|. ++|+. ..-....|+.||+++++|+
T Consensus 487 ~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 111111101111111 2333333 3443448889999999996 34432 2345677999999999999
Q ss_pred CCCcEEEEECC
Q 000055 2474 KDGDVKLWDAK 2484 (2548)
Q Consensus 2474 ~DGtIrIWDl~ 2484 (2548)
+|..|+||+..
T Consensus 566 eDs~VYiW~~~ 576 (712)
T KOG0283|consen 566 EDSWVYIWKND 576 (712)
T ss_pred cCceEEEEeCC
Confidence 99999999973
No 109
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.67 E-value=2.6e-15 Score=178.33 Aligned_cols=204 Identities=19% Similarity=0.295 Sum_probs=155.6
Q ss_pred CCCEEEEEECCCeEEEEEcCCCc-------eeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcC
Q 000055 2230 LRPFFLVGSSNTHIYLWEFGKDK-------ATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~-------~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~ 2301 (2548)
+..+.++-+..|.|+||++...- ......... --+...+|.+.=+.++|+|- ...++||..-+.|++|...
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~-Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~ 242 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFR-PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS 242 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccC-ceEEecccCccceeeecccccccccccCccccceEeeeec
Confidence 45677778999999999986311 011100000 00124557788899999993 3348899999999999998
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
+|.-.. ....+.+|...|- +|+|.. ..|++|+ -||+|+|||+|.++.+.....+.|.+.|+.|.|+..
T Consensus 243 ~g~W~v-----d~~Pf~gH~~SVEDLqWSptE~~vfaScS---~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~- 313 (440)
T KOG0302|consen 243 TGSWKV-----DQRPFTGHTKSVEDLQWSPTEDGVFASCS---CDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRR- 313 (440)
T ss_pred cCceee-----cCccccccccchhhhccCCccCceEEeee---cCceEEEEEecCCCccceeEeeccCCceeeEEccCC-
Confidence 764211 1123677888875 588865 4667764 899999999998766666666899999999999988
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE
Q 000055 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT 2458 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt 2458 (2548)
.++|++|+.||+++|||+|+.+.++.+.++ +-|..+|+
T Consensus 314 ------~~lLasG~DdGt~~iwDLR~~~~~~pVA~f------------------------------------k~Hk~pIt 351 (440)
T KOG0302|consen 314 ------EPLLASGGDDGTLSIWDLRQFKSGQPVATF------------------------------------KYHKAPIT 351 (440)
T ss_pred ------cceeeecCCCceEEEEEhhhccCCCcceeE------------------------------------EeccCCee
Confidence 459999999999999999998888777776 77999999
Q ss_pred EEEEeCC-CCEEEEEeCCCcEEEEECCC
Q 000055 2459 RISTVPN-TSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2459 sLafSPd-G~~LaSGS~DGtIrIWDl~T 2485 (2548)
+|.|+|. ...|+++|.|..|.+||+..
T Consensus 352 sieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 352 SIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred EEEeccccCceEEeccCCCcEEEEEeec
Confidence 9999995 46788888999999999863
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.66 E-value=4.5e-14 Score=169.20 Aligned_cols=256 Identities=13% Similarity=0.101 Sum_probs=178.4
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEEcCCCccccccc
Q 000055 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVWDl~tgk~i~i~p 2310 (2548)
..+++++.|+.|++||..+++.+..+.. + ..+.+++|+|+++.+ ++++.|+.|++||..+++....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~----------~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-- 68 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPV----------G-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT-- 68 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEEC----------C-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe--
Confidence 5688999999999999999887777642 1 346789999999876 5677899999999987753221
Q ss_pred CccceeccCC-cccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE
Q 000055 2311 MESCLCFSSH-AMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV 2389 (2548)
Q Consensus 2311 ~~s~~t~~gH-~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV 2389 (2548)
+..+ ......++|+++.+++++ ..|+.|++||+.. .+.+..+.. ...+.+++|+|+ +.+++
T Consensus 69 ------~~~~~~~~~~~~~~~g~~l~~~~--~~~~~l~~~d~~~--~~~~~~~~~-~~~~~~~~~~~d-------g~~l~ 130 (300)
T TIGR03866 69 ------LPSGPDPELFALHPNGKILYIAN--EDDNLVTVIDIET--RKVLAEIPV-GVEPEGMAVSPD-------GKIVV 130 (300)
T ss_pred ------ccCCCCccEEEECCCCCEEEEEc--CCCCeEEEEECCC--CeEEeEeeC-CCCcceEEECCC-------CCEEE
Confidence 1112 223345899999776654 3689999999975 445555542 334688999998 77888
Q ss_pred EEeCCC-cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc--c-CCCCCceEEEcccCC------------
Q 000055 2390 TGGKGG-DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS--K-PGDQNGMLWYIPKAH------------ 2453 (2548)
Q Consensus 2390 SGS~DG-tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v--~-s~D~sv~Iwdi~~gH------------ 2453 (2548)
+++.++ .+.+||. .+++....... . .....+.++++|..+ . ..++.+++|+...+.
T Consensus 131 ~~~~~~~~~~~~d~---~~~~~~~~~~~---~--~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~ 202 (300)
T TIGR03866 131 NTSETTNMAHFIDT---KTYEIVDNVLV---D--QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGV 202 (300)
T ss_pred EEecCCCeEEEEeC---CCCeEEEEEEc---C--CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccc
Confidence 888765 5677894 44555443211 1 112456789998863 2 347788999864321
Q ss_pred -CC--CEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--E
Q 000055 2454 -LG--SVTRISTVPNTSLFLTG-SKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2454 -~~--~VtsLafSPdG~~LaSG-S~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--L 2527 (2548)
.. ....++|+|++++++.+ +.++.|.+||+++++.+..+. .++ .+.+++|+|+| |
T Consensus 203 ~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-------------~~~------~~~~~~~~~~g~~l 263 (300)
T TIGR03866 203 HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-------------VGQ------RVWQLAFTPDEKYL 263 (300)
T ss_pred ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-------------eCC------CcceEEECCCCCEE
Confidence 01 22468899999986554 557789999999988776441 111 25677999999 6
Q ss_pred EEE-ECCCcEEEEECCCCc
Q 000055 2528 LSC-GGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2528 aSG-S~DGtIrIWDL~sg~ 2545 (2548)
+++ +.+|+|++||+.++.
T Consensus 264 ~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 264 LTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred EEEcCCCCeEEEEECCCCc
Confidence 554 569999999999875
No 111
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.66 E-value=1.5e-15 Score=184.79 Aligned_cols=210 Identities=18% Similarity=0.245 Sum_probs=158.9
Q ss_pred CCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcCCCcccccc--cCccceeccCCcccEE--EEcCCCC-EEEEEeccCCC
Q 000055 2270 ALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRSNVR--PMESCLCFSSHAMDVS--YITSSGS-VIAAAGHSSNG 2343 (2548)
Q Consensus 2270 H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~tgk~i~i~--p~~s~~t~~gH~~~V~--afSpdGs-lLATgG~SS~D 2343 (2548)
|.+.|..++..|+ ...+++++..+.|.|||..+-...... ...+...+.+|...-. +|++... .+++++ +|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~---~d 199 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS---DD 199 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc---CC
Confidence 6689999999996 556677788899999998754221111 2223345777776322 4555433 555654 89
Q ss_pred CeEEEEECCCCCC-----CcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC
Q 000055 2344 INVVVWDTLAPPT-----SSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR 2418 (2548)
Q Consensus 2344 GtVrIWDl~t~~~-----k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~ 2418 (2548)
++|++||+..... .+...+.+|++.|..++|++.+ ..++++++.|+.+.|||+|. .+.+.....
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h------~~lF~sv~dd~~L~iwD~R~-~~~~~~~~~---- 268 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH------EDLFGSVGDDGKLMIWDTRS-NTSKPSHSV---- 268 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccc------hhhheeecCCCeEEEEEcCC-CCCCCcccc----
Confidence 9999999975433 2457788999999999999997 78999999999999999884 222222221
Q ss_pred CCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCC-cEEEEecccc
Q 000055 2419 GGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAA-QLVYHWSKLH 2496 (2548)
Q Consensus 2419 ~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tg-ell~tL~~~H 2496 (2548)
.+|.+.|.|++|+| ++.+|||||.|++|++||+++- +++++
T Consensus 269 --------------------------------~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~----- 311 (422)
T KOG0264|consen 269 --------------------------------KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT----- 311 (422)
T ss_pred --------------------------------cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee-----
Confidence 78999999999999 5678999999999999999963 33433
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCC
Q 000055 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~s 2543 (2548)
+.+|.+ .|.++.|||+. |||+|.|+.+.|||+..
T Consensus 312 ---------~e~H~d----ev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 312 ---------FEGHED----EVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred ---------ccCCCc----ceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 378875 45778999998 89999999999999963
No 112
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=6.3e-15 Score=178.66 Aligned_cols=271 Identities=14% Similarity=0.196 Sum_probs=206.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCC--ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC-EEEEEeCCCcEEEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD--KATATYGVLPAANVPPPYALASISALQFDHYGH-RFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg--~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~-~LaSGS~DGtVrVW 2298 (2548)
+.++.|||..+.+++++.||+++||.++.. ..+..+.. ...+|.+.+|.|+|. .+++++.-.....|
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l----------~~fPi~~a~f~p~G~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL----------EKFPIQKAEFAPNGHSVIFTSGRRKYLYSY 285 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee----------ccCccceeeecCCCceEEEecccceEEEEe
Confidence 699999999999999999999999998743 33333321 126799999999999 89999999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEE---EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVS---YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~---afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
|+.+.+...+.+ ..++..... .+++++++|+.+| ..|.|.+-...+ ++.+.+++ -.+.|..+.|+
T Consensus 286 Dle~ak~~k~~~------~~g~e~~~~e~FeVShd~~fia~~G---~~G~I~lLhakT--~eli~s~K-ieG~v~~~~fs 353 (514)
T KOG2055|consen 286 DLETAKVTKLKP------PYGVEEKSMERFEVSHDSNFIAIAG---NNGHIHLLHAKT--KELITSFK-IEGVVSDFTFS 353 (514)
T ss_pred eccccccccccC------CCCcccchhheeEecCCCCeEEEcc---cCceEEeehhhh--hhhhheee-eccEEeeEEEe
Confidence 999887555443 334443332 3799999999998 889999988876 56677765 46789999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEccc--
Q 000055 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIPK-- 2451 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~~-- 2451 (2548)
.+ +..|++.+.+|.|.+||+|+ ..++..+..++ ......++.+++|.+ +++..|-+.||+...
T Consensus 354 Sd-------sk~l~~~~~~GeV~v~nl~~---~~~~~rf~D~G---~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 354 SD-------SKELLASGGTGEVYVWNLRQ---NSCLHRFVDDG---SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred cC-------CcEEEEEcCCceEEEEecCC---cceEEEEeecC---ccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 77 78888889999999999764 46666653222 223456677889998 455556678887321
Q ss_pred ------------CCCCCEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000055 2452 ------------AHLGSVTRISTVPNTSLFLTGSK--DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2452 ------------gH~~~VtsLafSPdG~~LaSGS~--DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
.-...|++++|+|++++||.+|. +..+|+-.+.+......|+. ....+ .-|
T Consensus 421 ~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~--------------~n~~v-g~v 485 (514)
T KOG2055|consen 421 ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT--------------SNTKV-GHV 485 (514)
T ss_pred ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC--------------CCCcc-cce
Confidence 23457999999999999998876 67899888887766665531 12222 448
Q ss_pred EEEEEcCCe--EEEEECCCcEEEEECC
Q 000055 2518 TDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2518 tsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
++++|||.| +|.|-.+|.+.+|.+.
T Consensus 486 tc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 486 TCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEEecCCCceEEeecCCCceeeEeec
Confidence 999999977 8899999999999975
No 113
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.65 E-value=3.5e-15 Score=170.85 Aligned_cols=233 Identities=20% Similarity=0.245 Sum_probs=172.8
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE---EEcCCCCEEEEEeccCCCC
Q 000055 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS---YITSSGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~---afSpdGslLATgG~SS~DG 2344 (2548)
.+|...|.+|+|+.+|.++++|+.|+++++|+++..... ......+|.+.|- +..++..+++++. .|+
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~------~~~~~~gh~~svdql~w~~~~~d~~atas---~dk 87 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR------KELVYRGHTDSVDQLCWDPKHPDLFATAS---GDK 87 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh------hhhcccCCCcchhhheeCCCCCcceEEec---CCc
Confidence 456789999999999999999999999999999866321 1233667776553 4455677888884 899
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000055 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
+|++||.+. ++++..+.. .++-.-+.|+|+ +.+++.|+.|..|.+.|.|.. +..... .....
T Consensus 88 ~ir~wd~r~--~k~~~~i~~-~~eni~i~wsp~-------g~~~~~~~kdD~it~id~r~~---~~~~~~-----~~~~e 149 (313)
T KOG1407|consen 88 TIRIWDIRS--GKCTARIET-KGENINITWSPD-------GEYIAVGNKDDRITFIDARTY---KIVNEE-----QFKFE 149 (313)
T ss_pred eEEEEEecc--CcEEEEeec-cCcceEEEEcCC-------CCEEEEecCcccEEEEEeccc---ceeehh-----cccce
Confidence 999999997 677777654 344456788998 789999999999999997642 222111 00111
Q ss_pred ccccccCCCCCC--ccCCCCCceEEE--------cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 000055 2425 TCAHADAQTGSG--SKPGDQNGMLWY--------IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSK 2494 (2548)
Q Consensus 2425 ~~~vafSpdGk~--v~s~D~sv~Iwd--------i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~ 2494 (2548)
..-+.++.++.+ +..+.|.+.|.. ..++|...+.|+.|+|+|++||+|+.|..+.+||+..--+++.+
T Consensus 150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i-- 227 (313)
T KOG1407|consen 150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI-- 227 (313)
T ss_pred eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee--
Confidence 222334444443 455556666654 34689999999999999999999999999999999877666655
Q ss_pred cccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000055 2495 LHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2495 ~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
..+.- +|..+.||-+| ||+||.|..|-|=++++|.
T Consensus 228 ------------sRldw----pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 228 ------------SRLDW----PVRTLSFSHDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred ------------ccccC----ceEEEEeccCcceeeccCccceEEeEecccCC
Confidence 33443 35566999999 9999999999887777763
No 114
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.65 E-value=2.7e-15 Score=186.80 Aligned_cols=275 Identities=17% Similarity=0.234 Sum_probs=182.6
Q ss_pred CCEEEEEECCCeEEEEEcCCCcee---EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccc
Q 000055 2231 RPFFLVGSSNTHIYLWEFGKDKAT---ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l---~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
...|+.+..||.|.++|....... ..+. ....|.+.|.++.|-|....|++++.|.++++||+++++...
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk-------~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G 136 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLK-------KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG 136 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhc-------ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec
Confidence 457889999999999997653221 1122 345578999999999988899999999999999999876543
Q ss_pred cccCccceeccCCcccEE--EEcCC-CCEEEEEeccCCCCeEEEEECCCCCCC-------------------------cc
Q 000055 2308 VRPMESCLCFSSHAMDVS--YITSS-GSVIAAAGHSSNGINVVVWDTLAPPTS-------------------------SR 2359 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~--afSpd-GslLATgG~SS~DGtVrIWDl~t~~~k-------------------------~v 2359 (2548)
.. .+.||...|- ||.+. ...|++|| .||.|.|||++..... .+
T Consensus 137 ~~------~~~GH~~SvkS~cf~~~n~~vF~tGg---RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 137 GR------LNLGHTGSVKSECFMPTNPAVFCTGG---RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred ce------eecccccccchhhhccCCCcceeecc---CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 21 3678888775 46664 46788887 9999999998742200 01
Q ss_pred eeeeccCCCeEE---EEEccCCCCCCCCCCEEEEEeC-CCcEEEEeCCccccCceeeeecCCC--CCC--CccccccccC
Q 000055 2360 ASITCHEGGARS---ISVFDNDLGSGSVSPLIVTGGK-GGDVGIHDFRYIATGKTKKHKHSDR--GGS--SINTCAHADA 2431 (2548)
Q Consensus 2360 ~sl~gHs~~VtS---LafsP~dlg~gs~g~lLVSGS~-DGtVrLWDLR~l~TGk~l~tl~~~~--~~s--~~~~~~vafS 2431 (2548)
..-..|...|.+ +.+.-+ ...||++|. |+.|+|||+|...+.-.......+. .+. ......+...
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkD-------e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKD-------ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred cccccccCceeeeeEEEEEec-------cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence 112234444444 444444 358888887 9999999998532211111100000 111 1112222333
Q ss_pred CCCCC--ccCCCCCceEEEccc----------CCCC-CE-EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccc
Q 000055 2432 QTGSG--SKPGDQNGMLWYIPK----------AHLG-SV-TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE 2497 (2548)
Q Consensus 2432 pdGk~--v~s~D~sv~Iwdi~~----------gH~~-~V-tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs 2497 (2548)
..|.+ +...|++|+.|++.. +|.. .+ ..-..+|++.++++|+.|....+|.+.+-+.--.+
T Consensus 281 ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~----- 355 (720)
T KOG0321|consen 281 SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL----- 355 (720)
T ss_pred CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh-----
Confidence 33454 666799999999643 2211 11 12236899999999999999999999876543322
Q ss_pred ccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCCc
Q 000055 2498 RHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+.||.- .|+.++|.|.. ++||++|-++++|++.++.
T Consensus 356 --------l~Ght~----eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 356 --------LLGHTR----EVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred --------hhCcce----EEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 467763 35777888876 9999999999999997764
No 115
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.3e-15 Score=180.84 Aligned_cols=245 Identities=18% Similarity=0.258 Sum_probs=189.8
Q ss_pred CEEEEE-ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccccc
Q 000055 2232 PFFLVG-SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2232 ~~LASG-S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p 2310 (2548)
.+++++ .....+.+|.+........+-..+ +.|.+++-+|+|.+++.|+..|.+.+|.+.+|..+.+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~P----------g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v-- 118 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLP----------GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV-- 118 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccc----------cceeeeecCCCceEEEeecccCcEEEEEeccccHHHH--
Confidence 455554 344578999998766555433333 7899999999999999999999999999999975543
Q ss_pred CccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECC-------CCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000055 2311 MESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTL-------APPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2311 ~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~-------t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
+.+|-..|++ |+.||.+|++|| .||.|.+|++. +...++++.+..|.-+|+++...+..
T Consensus 119 ------~~aHYQ~ITcL~fs~dgs~iiTgs---kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg--- 186 (476)
T KOG0646|consen 119 ------LSAHYQSITCLKFSDDGSHIITGS---KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG--- 186 (476)
T ss_pred ------HHhhccceeEEEEeCCCcEEEecC---CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC---
Confidence 6789999987 899999999997 99999999863 12345788999999999999976652
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEE
Q 000055 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIS 2461 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLa 2461 (2548)
....++|+|.|.++++|| +..|..+.++ .....+.+++
T Consensus 187 --~~~rl~TaS~D~t~k~wd---lS~g~LLlti-------------------------------------~fp~si~av~ 224 (476)
T KOG0646|consen 187 --TNARLYTASEDRTIKLWD---LSLGVLLLTI-------------------------------------TFPSSIKAVA 224 (476)
T ss_pred --ccceEEEecCCceEEEEE---eccceeeEEE-------------------------------------ecCCcceeEE
Confidence 366999999999999999 5667766664 1345889999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCc--EEEEe-cccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcE
Q 000055 2462 TVPNTSLFLTGSKDGDVKLWDAKAAQ--LVYHW-SKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSV 2536 (2548)
Q Consensus 2462 fSPdG~~LaSGS~DGtIrIWDl~Tge--ll~tL-~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtI 2536 (2548)
.+|-++.++.|+.||.|.+.++..-. ..... +..|...+ -.+.+.||.+. ..|++++++-|| |++|+.||+|
T Consensus 225 lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t-~~~~~~Gh~~~--~~ITcLais~DgtlLlSGd~dg~V 301 (476)
T KOG0646|consen 225 LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT-QINVLVGHENE--SAITCLAISTDGTLLLSGDEDGKV 301 (476)
T ss_pred EcccccEEEecCCcceEEeeehhcCCcccccccccccccccc-eeeeeccccCC--cceeEEEEecCccEEEeeCCCCCE
Confidence 99999999999999999998876422 21100 11122222 13446888763 457899999999 8899999999
Q ss_pred EEEECCCCc
Q 000055 2537 KLIQLEDYQ 2545 (2548)
Q Consensus 2537 rIWDL~sg~ 2545 (2548)
.|||+.+.+
T Consensus 302 cvWdi~S~Q 310 (476)
T KOG0646|consen 302 CVWDIYSKQ 310 (476)
T ss_pred EEEecchHH
Confidence 999997754
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=8.1e-16 Score=174.60 Aligned_cols=210 Identities=21% Similarity=0.296 Sum_probs=166.4
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--E-cC-CCCEEEEEeccCCCC
Q 000055 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--I-TS-SGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--f-Sp-dGslLATgG~SS~DG 2344 (2548)
.|.+.|.++...-.|++|+||+.|++|+|+.++.+... ..+.++.||.++|.. | +| .|.+||++. .||
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s-----~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs---YDg 80 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS-----KLLAELTGHSGPVWKVAWAHPKFGTILASCS---YDG 80 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc-----eeeeEecCCCCCeeEEeecccccCcEeeEee---cCc
Confidence 46688888888888999999999999999999876431 234568999999873 3 33 789999985 899
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000055 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
.|.||.-..+..+.......|...|++|+|.|.+ .|-.|++++.||.|.|.+++. .|.....
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~waphe-----ygl~LacasSDG~vsvl~~~~--~g~w~t~----------- 142 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHE-----YGLLLACASSDGKVSVLTYDS--SGGWTTS----------- 142 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcccceeecccccc-----cceEEEEeeCCCcEEEEEEcC--CCCccch-----------
Confidence 9999998875555677888999999999999996 367999999999999999652 1111000
Q ss_pred ccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC---C-----------CEEEEEeCCCcEEEEECCCCcEEE
Q 000055 2425 TCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN---T-----------SLFLTGSKDGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd---G-----------~~LaSGS~DGtIrIWDl~Tgell~ 2490 (2548)
.+..+|.-.|+++.|.|. | +.|++|+.|..|+||+..+++-+.
T Consensus 143 -----------------------ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~ 199 (299)
T KOG1332|consen 143 -----------------------KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL 199 (299)
T ss_pred -----------------------hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh
Confidence 123689999999999995 4 569999999999999998874321
Q ss_pred EecccccccccccCcccCCCCceeecEEEEEEcCCe------EEEEECCCcEEEEECCC
Q 000055 2491 HWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG------FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2491 tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG------LaSGS~DGtIrIWDL~s 2543 (2548)
..+|++|.+.|+.+ +|.|.- |||||.||+|.||..+.
T Consensus 200 ------------e~~l~~H~dwVRDV----AwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 200 ------------ERTLEGHKDWVRDV----AWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred ------------hhhhhhcchhhhhh----hhccccCCCceeeEEecCCCcEEEEEecC
Confidence 12368999877554 888865 99999999999998763
No 117
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2e-16 Score=198.68 Aligned_cols=227 Identities=21% Similarity=0.381 Sum_probs=185.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000055 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.++..-..++.+++|+.|..+-+|.+..-..+..+. +|...|.++.|+++..+++.|+.||+|++||++.
T Consensus 32 ~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~----------~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 32 GCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLT----------GHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred ceeeeeccceeeccCCCceeeccccccCCchhheee----------ccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 333334577899999999999999988766555543 3669999999999999999999999999999997
Q ss_pred CcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000055 2303 GGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
++.. .++.+|...+.. |+|-+.+++.| |.|+.+++||.+. ..|.+.+.+|...|.++.|+|+
T Consensus 102 Ak~v--------rtLtgh~~~~~sv~f~P~~~~~a~g---Stdtd~~iwD~Rk--~Gc~~~~~s~~~vv~~l~lsP~--- 165 (825)
T KOG0267|consen 102 AKIV--------RTLTGHLLNITSVDFHPYGEFFASG---STDTDLKIWDIRK--KGCSHTYKSHTRVVDVLRLSPD--- 165 (825)
T ss_pred hhhh--------hhhhccccCcceeeeccceEEeccc---cccccceehhhhc--cCceeeecCCcceeEEEeecCC---
Confidence 7533 247788877763 89999999776 4899999999985 5789999999999999999999
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000055 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
|.++++|+.|.+++|||+ ..|+.+..+ ..|++.|..+
T Consensus 166 ----Gr~v~~g~ed~tvki~d~---~agk~~~ef------------------------------------~~~e~~v~sl 202 (825)
T KOG0267|consen 166 ----GRWVASGGEDNTVKIWDL---TAGKLSKEF------------------------------------KSHEGKVQSL 202 (825)
T ss_pred ----CceeeccCCcceeeeecc---ccccccccc------------------------------------cccccccccc
Confidence 889999999999999994 456665555 7899999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcE
Q 000055 2461 STVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSV 2536 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtI 2536 (2548)
.|+|..-++++||.|++|++||+++.+.+.... .. ...|.+.+|+|+| .+-+|..-++
T Consensus 203 e~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~--------------~~----~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 203 EFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK--------------PE----TDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred ccCchhhhhccCCCCceeeeeccceeEEeeccC--------------Cc----cCCceeeeecCCceeeecCchhhh
Confidence 999999999999999999999999988886442 11 1346677999999 4444433333
No 118
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.8e-14 Score=185.70 Aligned_cols=250 Identities=17% Similarity=0.223 Sum_probs=190.2
Q ss_pred CccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCC-ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000055 2215 ATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKD-KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2215 ~tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg-~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
.+..|+ +.++|.|+|.++.+++.||.|++|+.... +...++.. +...|.+++.. +.+|++|+.++
T Consensus 11 aht~G~--t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~----------~g~~v~~ia~~--s~~f~~~s~~~ 76 (933)
T KOG1274|consen 11 AHTGGL--TLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI----------SGELVSSIACY--SNHFLTGSEQN 76 (933)
T ss_pred hccCce--EEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc----------cCceeEEEeec--ccceEEeeccc
Confidence 355666 67777899999999999999999997765 33333221 34667777754 56899999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000055 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
+|.+|.+..+....+. ..+ .-..++++++.+|+++|.|+ +|-.|++-++.. ......+++|.++|.++.
T Consensus 77 tv~~y~fps~~~~~iL-----~Rf-tlp~r~~~v~g~g~~iaags---dD~~vK~~~~~D--~s~~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 77 TVLRYKFPSGEEDTIL-----ARF-TLPIRDLAVSGSGKMIAAGS---DDTAVKLLNLDD--SSQEKVLRGHDAPVLQLS 145 (933)
T ss_pred eEEEeeCCCCCcccee-----eee-eccceEEEEecCCcEEEeec---CceeEEEEeccc--cchheeecccCCceeeee
Confidence 9999999877533221 111 12235567899999999986 999999999876 667889999999999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000055 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
|+|. +.+||+.+-||.|++|| ++++.+..++....... + ...
T Consensus 146 ~~p~-------~~fLAvss~dG~v~iw~---~~~~~~~~tl~~v~k~n--------------------------~--~~~ 187 (933)
T KOG1274|consen 146 YDPK-------GNFLAVSSCDGKVQIWD---LQDGILSKTLTGVDKDN--------------------------E--FIL 187 (933)
T ss_pred EcCC-------CCEEEEEecCceEEEEE---cccchhhhhcccCCccc--------------------------c--ccc
Confidence 9999 78999999999999999 56666655541100000 0 111
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEE
Q 000055 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCG 2531 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS 2531 (2548)
...+..++|+|+|..|+..+.|+.|++|+..+.+....+... -|. +.+.++.|+|+| ||+++
T Consensus 188 s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~------------~~s----s~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 188 SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK------------LSS----SKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred cceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc------------ccc----cceEEEEEcCCCcEEeeec
Confidence 456778999999888888889999999999999988877311 111 336788999999 99999
Q ss_pred CCCcEEEEECCC
Q 000055 2532 GDGSVKLIQLED 2543 (2548)
Q Consensus 2532 ~DGtIrIWDL~s 2543 (2548)
.||.|-|||+++
T Consensus 252 ~~g~I~vWnv~t 263 (933)
T KOG1274|consen 252 LDGQILVWNVDT 263 (933)
T ss_pred cCCcEEEEeccc
Confidence 999999999985
No 119
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2e-14 Score=180.82 Aligned_cols=300 Identities=13% Similarity=0.134 Sum_probs=216.7
Q ss_pred ccCCCCceEEeccCceeEEEEeccCCCCcEEEeecCCceEEeeccCcccccccchhhhccCCCCCCCCCCCCCCCCCCcc
Q 000055 2068 IPFQAPKEICKRNGELFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADWPQNGWAGSESTPVPTFV 2147 (2548)
Q Consensus 2068 ~~f~~~~~ii~~~~~~I~a~~iN~~n~~~lalAs~rk~~~~~~l~~~~~~~~~~~~lw~~ad~p~n~w~~~~Stp~~ts~ 2147 (2548)
++..+++|+++..+..|+++|++... +++|++=....+ +||+ ++++|-....-.+++
T Consensus 12 ~m~vhrcrf~d~~Ps~I~slA~s~kS-~~lAvsRt~g~I----------------EiwN----~~~~w~~~~vi~g~~-- 68 (691)
T KOG2048|consen 12 KMQVHRCRFVDYKPSEIVSLAYSHKS-NQLAVSRTDGNI----------------EIWN----LSNNWFLEPVIHGPE-- 68 (691)
T ss_pred eeEEEEEEEEeeeccceEEEEEeccC-CceeeeccCCcE----------------EEEc----cCCCceeeEEEecCC--
Confidence 34568999999999999999998875 445554442333 7887 366666444322211
Q ss_pred CCCCCCCCCCCccccccCccccccCCCCCCCcccCCccccCCCCccCCccccccccccCCccccCCCCccCCeEEEEEEE
Q 000055 2148 SPGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWETQDDFEDYVDPPATVENISTRAFSS 2227 (2548)
Q Consensus 2148 SP~vg~~S~rGs~l~lggasiG~~ssa~p~~~l~G~~s~gi~G~~g~gaS~i~W~~~ed~e~~v~p~~tl~gV~V~~Vsf 2227 (2548)
... +-.++|
T Consensus 69 ------------------------------------------------------------------drs-----IE~L~W 77 (691)
T KOG2048|consen 69 ------------------------------------------------------------------DRS-----IESLAW 77 (691)
T ss_pred ------------------------------------------------------------------CCc-----eeeEEE
Confidence 001 355666
Q ss_pred cCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccc
Q 000055 2228 HPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2228 SPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
. ++..|++.+.+|.|.-||+.+++....+... .+.|++++.+|.+..++.|+.||.+..++...+...
T Consensus 78 ~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~----------gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~- 145 (691)
T KOG2048|consen 78 A-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN----------GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT- 145 (691)
T ss_pred c-cCCeEEeecCCceEEEEecccCceeEEecCC----------CcceeEEEeCCccceEEeecCCceEEEEecCCceEE-
Confidence 6 5567889999999999999999988877542 378999999999999999999997777777665422
Q ss_pred cccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee------ccCCCeEEEEEccCCC
Q 000055 2308 VRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT------CHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~------gHs~~VtSLafsP~dl 2379 (2548)
....+....++|.+ |++++..+++|+ .||.|++||...+..-.+.+++ +..--|++|.|..++
T Consensus 146 -----~~r~l~rq~sRvLslsw~~~~~~i~~Gs---~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~- 216 (691)
T KOG2048|consen 146 -----YKRSLMRQKSRVLSLSWNPTGTKIAGGS---IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS- 216 (691)
T ss_pred -----EEeecccccceEEEEEecCCccEEEecc---cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-
Confidence 22335566677775 788888899875 8999999999863222222221 123458899988664
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000055 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
.|++|.+-|+|.+|| ...|..++.+ ..|.+.|.+
T Consensus 217 -------tI~sgDS~G~V~FWd---~~~gTLiqS~------------------------------------~~h~adVl~ 250 (691)
T KOG2048|consen 217 -------TIASGDSAGTVTFWD---SIFGTLIQSH------------------------------------SCHDADVLA 250 (691)
T ss_pred -------cEEEecCCceEEEEc---ccCcchhhhh------------------------------------hhhhcceeE
Confidence 999999999999999 5556555554 779999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEECCCcEEEE
Q 000055 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLI 2539 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIW 2539 (2548)
++.++++.+++++|.|+.|..+...++....... . . ...|...| .+++..++-+++||.|+++.+-
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~------~--~--r~~h~hdv----rs~av~~~~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN------S--R--RDLHAHDV----RSMAVIENALISGGRDFTLAIC 316 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccceeee------c--c--ccCCcccc----eeeeeecceEEecceeeEEEEc
Confidence 9999999999999999999999887654321110 0 0 24455444 4447777779999999998876
Q ss_pred ECC
Q 000055 2540 QLE 2542 (2548)
Q Consensus 2540 DL~ 2542 (2548)
...
T Consensus 317 ~s~ 319 (691)
T KOG2048|consen 317 SSR 319 (691)
T ss_pred ccc
Confidence 554
No 120
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=8.4e-15 Score=181.00 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=195.5
Q ss_pred cCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCE-EEEEeCCC
Q 000055 2217 VENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHR-FASAALDG 2293 (2548)
Q Consensus 2217 l~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~-LaSGS~DG 2293 (2548)
+.+|+ +++++.+|.|.+|++|+.||+|+||.+.+|+++.++.. .+.|.+|+|+|.++. ++.++.++
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-----------d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-----------DSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-----------cceeEEEEecCCCCceeEEEEecC
Confidence 34444 79999999999999999999999999999999998753 267999999996542 33333444
Q ss_pred cEEEEEcCCCccccc---------ccCccc--------------------eeccCCcccEE--EEcCCCCEEEEEeccCC
Q 000055 2294 TVCTWQLEVGGRSNV---------RPMESC--------------------LCFSSHAMDVS--YITSSGSVIAAAGHSSN 2342 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i---------~p~~s~--------------------~t~~gH~~~V~--afSpdGslLATgG~SS~ 2342 (2548)
.+.+-+..-|..+.. .+.... ...-.|...|. .|+..|.+|++....+.
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 455555433311110 000000 01112333333 26778999999864445
Q ss_pred CCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCC
Q 000055 2343 GINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS 2422 (2548)
Q Consensus 2343 DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~ 2422 (2548)
...|.|.++.. ......|+.-.+.|.++.|+|. ..+|++++ -..|+|||+ ..+..++.+ ....
T Consensus 545 ~~~VliHQLSK--~~sQ~PF~kskG~vq~v~FHPs-------~p~lfVaT-q~~vRiYdL---~kqelvKkL----~tg~ 607 (733)
T KOG0650|consen 545 NKSVLIHQLSK--RKSQSPFRKSKGLVQRVKFHPS-------KPYLFVAT-QRSVRIYDL---SKQELVKKL----LTGS 607 (733)
T ss_pred cceEEEEeccc--ccccCchhhcCCceeEEEecCC-------CceEEEEe-ccceEEEeh---hHHHHHHHH----hcCC
Confidence 67899999875 3334455556788999999999 56666665 468999995 333433333 2233
Q ss_pred ccccccccCCCCCC--ccCCCCCceEEEc---------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC------C
Q 000055 2423 INTCAHADAQTGSG--SKPGDQNGMLWYI---------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK------A 2485 (2548)
Q Consensus 2423 ~~~~~vafSpdGk~--v~s~D~sv~Iwdi---------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~------T 2485 (2548)
.....++++|.|.- +++.++.+..+|+ +.-|...|++|+||+.-.+|++|+.||++.|+.-. .
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~q 687 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQ 687 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhc
Confidence 44566788887665 6666666666663 45699999999999999999999999999998533 2
Q ss_pred CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEE
Q 000055 2486 AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLI 2539 (2548)
Q Consensus 2486 gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIW 2539 (2548)
+-++.-+ ..++||...-.-+|.++.|+|.. |.|+|+||+|++|
T Consensus 688 npliVPl-----------K~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 NPLIVPL-----------KRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEee-----------eeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 2223222 12588876544567888999999 9999999999998
No 121
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2.3e-16 Score=198.10 Aligned_cols=223 Identities=19% Similarity=0.327 Sum_probs=181.5
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccc
Q 000055 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNV 2308 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i 2308 (2548)
|.+.+++.+..+..+++||.... ..|...|.++..-..++.+++|+.|..+-+|.+.....
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~~----------------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~--- 62 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTREF----------------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA--- 62 (825)
T ss_pred Ccccccceeeeeeccccccchhh----------------hhhhhhhceeeeeccceeeccCCCceeeccccccCCch---
Confidence 45556667777777888885432 12557788888766788999999999999998864321
Q ss_pred ccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCC
Q 000055 2309 RPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSP 2386 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~ 2386 (2548)
...+.+|...|-+ |+++..+|++|. .+|+|++||+.. .+.++++.||...+.+|.|+|- +.
T Consensus 63 -----i~S~~~hespIeSl~f~~~E~Llaags---asgtiK~wDlee--Ak~vrtLtgh~~~~~sv~f~P~-------~~ 125 (825)
T KOG0267|consen 63 -----ITSLTGHESPIESLTFDTSERLLAAGS---ASGTIKVWDLEE--AKIVRTLTGHLLNITSVDFHPY-------GE 125 (825)
T ss_pred -----hheeeccCCcceeeecCcchhhhcccc---cCCceeeeehhh--hhhhhhhhccccCcceeeeccc-------eE
Confidence 2237899998876 777778888874 899999999986 6788999999999999999998 67
Q ss_pred EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCC
Q 000055 2387 LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNT 2466 (2548)
Q Consensus 2387 lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG 2466 (2548)
+.++|+.|+.+++||+|. ..|...+ .+|...|..+.|+|+|
T Consensus 126 ~~a~gStdtd~~iwD~Rk---~Gc~~~~------------------------------------~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 126 FFASGSTDTDLKIWDIRK---KGCSHTY------------------------------------KSHTRVVDVLRLSPDG 166 (825)
T ss_pred Eeccccccccceehhhhc---cCceeee------------------------------------cCCcceeEEEeecCCC
Confidence 889999999999999763 2343333 6799999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000055 2467 SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2467 ~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
+++++|++|.+++|||...|+.+.+| .+|.+.+. .+.|+|.. +++||.|++|++||+++.
T Consensus 167 r~v~~g~ed~tvki~d~~agk~~~ef--------------~~~e~~v~----sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKLSKEF--------------KSHEGKVQ----SLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred ceeeccCCcceeeeeccccccccccc--------------cccccccc----ccccCchhhhhccCCCCceeeeecccee
Confidence 99999999999999999999998766 56766553 44799988 789999999999999853
No 122
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=3e-15 Score=173.33 Aligned_cols=244 Identities=16% Similarity=0.212 Sum_probs=179.1
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcC------C--------Cc-eeEEEe----------ccCCCCC---
Q 000055 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFG------K--------DK-ATATYG----------VLPAANV--- 2265 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~------t--------g~-~l~t~~----------~l~ghs~--- 2265 (2548)
+..||. +.++.||+.+.++++++.|++..||... . ++ ....-. ...+|.+
T Consensus 185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP 264 (481)
T KOG0300|consen 185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP 264 (481)
T ss_pred eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence 344444 6999999999999999999999999831 1 00 000000 0011111
Q ss_pred --CCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccC
Q 000055 2266 --PPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSS 2341 (2548)
Q Consensus 2266 --~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS 2341 (2548)
+..+|.+.|.+..|-..|+.+++++.|.+..+||+++|..+. .+.||..... +-.|..++++++ |
T Consensus 265 l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~--------~LtGHd~ELtHcstHptQrLVvTs---S 333 (481)
T KOG0300|consen 265 LMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN--------ILTGHDSELTHCSTHPTQRLVVTS---S 333 (481)
T ss_pred eeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceec--------cccCcchhccccccCCcceEEEEe---c
Confidence 345788999999999999999999999999999999997544 3788888775 356777888887 4
Q ss_pred CCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC
Q 000055 2342 NGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS 2421 (2548)
Q Consensus 2342 ~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s 2421 (2548)
.|.+.++||.+. .-..+..|+||++.|+++.|.-++ .+++|+.|.+|++||+|++.+. +.++..+
T Consensus 334 rDtTFRLWDFRe-aI~sV~VFQGHtdtVTS~vF~~dd--------~vVSgSDDrTvKvWdLrNMRsp--lATIRtd---- 398 (481)
T KOG0300|consen 334 RDTTFRLWDFRE-AIQSVAVFQGHTDTVTSVVFNTDD--------RVVSGSDDRTVKVWDLRNMRSP--LATIRTD---- 398 (481)
T ss_pred cCceeEeccchh-hcceeeeecccccceeEEEEecCC--------ceeecCCCceEEEeeeccccCc--ceeeecC----
Confidence 999999999984 356788999999999999998875 9999999999999999865432 2222111
Q ss_pred CccccccccCCCCCC--ccCCCCCceEEEc------------ccCCCCCEEEEEEeCCC--CEEEEEeCCCcEEEEECCC
Q 000055 2422 SINTCAHADAQTGSG--SKPGDQNGMLWYI------------PKAHLGSVTRISTVPNT--SLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2422 ~~~~~~vafSpdGk~--v~s~D~sv~Iwdi------------~~gH~~~VtsLafSPdG--~~LaSGS~DGtIrIWDl~T 2485 (2548)
.....++++..+.+ +--.+..++++|+ .++|...|+|++|..+. .-|+++|.|..+.-|.+..
T Consensus 399 -S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 399 -SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred -CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 11223344444444 3344556788874 35899999999997654 4578999999999999875
Q ss_pred C
Q 000055 2486 A 2486 (2548)
Q Consensus 2486 g 2486 (2548)
.
T Consensus 478 p 478 (481)
T KOG0300|consen 478 P 478 (481)
T ss_pred c
Confidence 3
No 123
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.63 E-value=1.5e-13 Score=175.44 Aligned_cols=271 Identities=16% Similarity=0.234 Sum_probs=189.7
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000055 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
|..++|..||+ .+++|+..|.+.+||++..+.....+ ..|.+.|....|-|....+++++.|..+++|-.
T Consensus 247 VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~---------nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 247 VTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR---------NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF 317 (910)
T ss_pred eeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee---------ccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence 68899999987 55678888999999999877665543 235688999999999999999999998888855
Q ss_pred CCCccc----c-----cccC----------------------------------------------------------cc
Q 000055 2301 EVGGRS----N-----VRPM----------------------------------------------------------ES 2313 (2548)
Q Consensus 2301 ~tgk~i----~-----i~p~----------------------------------------------------------~s 2313 (2548)
+++.-. . ..|. ..
T Consensus 318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 422100 0 0000 00
Q ss_pred cee--------------ccCC-----------------------c------ccEE--EEcCCCCEEEEEeccCCCCeEEE
Q 000055 2314 CLC--------------FSSH-----------------------A------MDVS--YITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2314 ~~t--------------~~gH-----------------------~------~~V~--afSpdGslLATgG~SS~DGtVrI 2348 (2548)
... +..| . ..+. +.++-|++.+.|. ..|.|.+
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~---S~G~Id~ 474 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY---SKGTIDR 474 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec---cCCeEEE
Confidence 000 0001 0 1111 2455566666553 6889999
Q ss_pred EECCCCCCCcceee---eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000055 2349 WDTLAPPTSSRASI---TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl---~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
|++.+ +-....+ ..|.++|++++...- ++.+++++.+|.+++||+. ....+..+. .....
T Consensus 475 fNmQS--Gi~r~sf~~~~ah~~~V~gla~D~~-------n~~~vsa~~~Gilkfw~f~---~k~l~~~l~-----l~~~~ 537 (910)
T KOG1539|consen 475 FNMQS--GIHRKSFGDSPAHKGEVTGLAVDGT-------NRLLVSAGADGILKFWDFK---KKVLKKSLR-----LGSSI 537 (910)
T ss_pred EEccc--CeeecccccCccccCceeEEEecCC-------CceEEEccCcceEEEEecC---Ccceeeeec-----cCCCc
Confidence 99876 4445555 489999999998766 6799999999999999954 333333331 11112
Q ss_pred cccccCCCCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc
Q 000055 2426 CAHADAQTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKL 2495 (2548)
Q Consensus 2426 ~~vafSpdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~ 2495 (2548)
..+..+..... ++..+-.+.++|+ +.||.+.|++++|+|||++|++++.|++|++||+.++.++..+-
T Consensus 538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-- 615 (910)
T KOG1539|consen 538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-- 615 (910)
T ss_pred ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe--
Confidence 22333333222 5566667778874 56899999999999999999999999999999999999998661
Q ss_pred ccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC-CcEEEEE
Q 000055 2496 HERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD-GSVKLIQ 2540 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D-GtIrIWD 2540 (2548)
+..+++++.|+|+| |||...| .-|.+|.
T Consensus 616 -----------------vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 616 -----------------VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred -----------------cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 22457888999999 8888888 6799996
No 124
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.63 E-value=5e-14 Score=162.93 Aligned_cols=220 Identities=15% Similarity=0.212 Sum_probs=147.5
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCCce------eEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCC
Q 000055 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKA------TATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDG 2293 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~------l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DG 2293 (2548)
|.++...+ .|+|+++|+.||.|.+||+.+... +..-.+.-+. .-+.+|.-.|.++.|-| |.-.|.+++.|.
T Consensus 46 vNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~-~h~~~Hky~iss~~WyP~DtGmFtssSFDh 124 (397)
T KOG4283|consen 46 VNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAK-QHENGHKYAISSAIWYPIDTGMFTSSSFDH 124 (397)
T ss_pred cceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccc-cCCccceeeeeeeEEeeecCceeecccccc
Confidence 45566556 589999999999999999985431 1111110010 02467888999999999 667788999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEE--EEcC---CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCC
Q 000055 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITS---SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGG 2368 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSp---dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~ 2368 (2548)
+++|||.++.+...... -...|. +++| ..-+||+|. .|-.|++-|+.. +.+-+.+.||.++
T Consensus 125 tlKVWDtnTlQ~a~~F~---------me~~VYshamSp~a~sHcLiA~gt---r~~~VrLCDi~S--Gs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDFK---------MEGKVYSHAMSPMAMSHCLIAAGT---RDVQVRLCDIAS--GSFSHTLSGHRDG 190 (397)
T ss_pred eEEEeecccceeeEEee---------cCceeehhhcChhhhcceEEEEec---CCCcEEEEeccC--CcceeeeccccCc
Confidence 99999999876432211 112232 1333 234666664 889999999987 7889999999999
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEE
Q 000055 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY 2448 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwd 2448 (2548)
|.+|.|+|.. .-.|++|+.||.|++||+|. .+ .|...+........ .+..
T Consensus 191 vlaV~Wsp~~------e~vLatgsaDg~irlWDiRr-as-gcf~~lD~hn~k~~----------------------p~~~ 240 (397)
T KOG4283|consen 191 VLAVEWSPSS------EWVLATGSADGAIRLWDIRR-AS-GCFRVLDQHNTKRP----------------------PILK 240 (397)
T ss_pred eEEEEeccCc------eeEEEecCCCceEEEEEeec-cc-ceeEEeecccCccC----------------------cccc
Confidence 9999999994 55899999999999999984 22 23333311111110 0111
Q ss_pred cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000055 2449 IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2449 i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
...+|.+.|.+++|..++.++++.+.|..+++|+..+|
T Consensus 241 ~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 241 TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred ccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 12456666666666666666666666666666666544
No 125
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=1.3e-14 Score=169.65 Aligned_cols=223 Identities=19% Similarity=0.228 Sum_probs=165.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC--EEEEEeCCCcEEEEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH--RFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~--~LaSGS~DGtVrVWD 2299 (2548)
+.+++ -+|+|+|+|+.|-+|+|||..+......+-. |.+.|+++.|.+.-. .|++|+.||.|.+|+
T Consensus 46 itavA--Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~----------HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 46 ITALA--VSGPYVASGSSDETIHIYDMRKRKQLGILLS----------HAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred eeEEE--ecceeEeccCCCCcEEEEeccchhhhcceec----------cccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 46666 4589999999999999999998777666532 669999999998654 899999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000055 2300 LEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+.... ....+.+|...|. +++|.|++-++.| .|+.++.||+-.+....+..+. ...+.|.|+|.
T Consensus 114 ~~~W~--------~~~slK~H~~~Vt~lsiHPS~KLALsVg---~D~~lr~WNLV~Gr~a~v~~L~---~~at~v~w~~~ 179 (362)
T KOG0294|consen 114 VGSWE--------LLKSLKAHKGQVTDLSIHPSGKLALSVG---GDQVLRTWNLVRGRVAFVLNLK---NKATLVSWSPQ 179 (362)
T ss_pred cCCeE--------EeeeecccccccceeEecCCCceEEEEc---CCceeeeehhhcCccceeeccC---CcceeeEEcCC
Confidence 87653 3345788888887 4889999999887 8999999999763232333332 33455999988
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEc-------
Q 000055 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYI------- 2449 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi------- 2449 (2548)
|.+++.++.++ |-+|-+. +......+..+ ....++.|...+.+ ++..+..+.+||.
T Consensus 180 -------Gd~F~v~~~~~-i~i~q~d---~A~v~~~i~~~-----~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~ 243 (362)
T KOG0294|consen 180 -------GDHFVVSGRNK-IDIYQLD---NASVFREIENP-----KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLT 243 (362)
T ss_pred -------CCEEEEEeccE-EEEEecc---cHhHhhhhhcc-----ccceeeeecCCceEEEecCCceEEEeccCCCccce
Confidence 77888877654 7788743 33332222111 11223334444444 7777788888874
Q ss_pred -ccCCCCCEEEEEE--eCCCCEEEEEeCCCcEEEEECCCC
Q 000055 2450 -PKAHLGSVTRIST--VPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2450 -~~gH~~~VtsLaf--SPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
+.+|...|.++.+ .|++.+|+|+|.||.|+|||++..
T Consensus 244 ~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 244 EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 5689999999984 567899999999999999999865
No 126
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.62 E-value=1.7e-14 Score=175.04 Aligned_cols=250 Identities=16% Similarity=0.169 Sum_probs=180.2
Q ss_pred EEEEEEcCCCC--EEEEEECCCeEEEEEcCCCce-eEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEE
Q 000055 2222 TRAFSSHPLRP--FFLVGSSNTHIYLWEFGKDKA-TATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~--~LASGS~DGsVrLWDl~tg~~-l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrV 2297 (2548)
+.+++|||..+ ++|+|+.-|.|-+||+.+.+. ...+..+ ..|.+.|.++.|+| +...+++.+.||+|++
T Consensus 189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-------~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-------TPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-------ccCCccccceEecCCChhheeeeccCceeee
Confidence 79999999754 888999999999999963222 1222111 23669999999999 5678999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccEE--E--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000055 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVS--Y--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~--a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
-|++.+....+ +......+. . ++.+...++.++ .=|...+||++++ +.....+.-|...|.+|+
T Consensus 262 ~D~~~~i~e~v--------~s~~~d~~~fs~~d~~~e~~~vl~~~---~~G~f~~iD~R~~-~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 262 QDFEGNISEEV--------LSLDTDNIWFSSLDFSAESRSVLFGD---NVGNFNVIDLRTD-GSEYENLRLHKKKITSVA 329 (498)
T ss_pred eeecchhhHHH--------hhcCccceeeeeccccCCCccEEEee---cccceEEEEeecC-Cccchhhhhhhcccceee
Confidence 99987642221 111122222 1 555666666665 4469999999985 455667778999999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCce-eeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000055 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKT-KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~-l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
++|-+ ..+++|+|.|++++|||+|.+..... +... ..
T Consensus 330 ~NP~~------p~~laT~s~D~T~kIWD~R~l~~K~sp~lst------------------------------------~~ 367 (498)
T KOG4328|consen 330 LNPVC------PWFLATASLDQTAKIWDLRQLRGKASPFLST------------------------------------LP 367 (498)
T ss_pred cCCCC------chheeecccCcceeeeehhhhcCCCCcceec------------------------------------cc
Confidence 99985 77999999999999999987544432 1111 46
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC----CCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--
Q 000055 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK----AAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-- 2526 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~----Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-- 2526 (2548)
|...|.+..|+|.+-.|+|.+.|..|+|||.. .-.+..++. |...+ -.|-. ....+|.|+.
T Consensus 368 HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~--Hn~~t------~RwlT-----~fKA~W~P~~~l 434 (498)
T KOG4328|consen 368 HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP--HNNRT------GRWLT-----PFKAAWDPDYNL 434 (498)
T ss_pred ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee--ccCcc------ccccc-----chhheeCCCccE
Confidence 99999999999988779999999999999983 334444442 21111 11222 2233799988
Q ss_pred EEEEECCCcEEEEECCCCc
Q 000055 2527 FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2527 LaSGS~DGtIrIWDL~sg~ 2545 (2548)
++.|-.-..|-|+|-.+++
T Consensus 435 i~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 435 IVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred EEEeccCcceeEEcCCCCE
Confidence 7788888889999988776
No 127
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=3.4e-15 Score=196.39 Aligned_cols=244 Identities=15% Similarity=0.301 Sum_probs=181.7
Q ss_pred EEEEEEcCCCCE----EEEEECCCeEEEEEcCC---CceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCC
Q 000055 2222 TRAFSSHPLRPF----FLVGSSNTHIYLWEFGK---DKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDG 2293 (2548)
Q Consensus 2222 V~~VsfSPdG~~----LASGS~DGsVrLWDl~t---g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DG 2293 (2548)
-..++|.+.|.. +|.|..||.|.+||... +.....+. +...|.+.|..+.|++. ++.||+|+.||
T Consensus 67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la-------~~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLA-------TKSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHh-------hhcccCCceeeeeccccCCceeeccCCCC
Confidence 467788777665 88899999999999875 33322222 22346799999999995 56999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEEEcCC---CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC--C
Q 000055 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS---GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG--G 2368 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpd---GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~--~ 2368 (2548)
.|.|||+...+ .|+... -......|.+++++ .++|++++ .+|.+.|||++. .+++..+..|.+ .
T Consensus 140 eI~iWDlnn~~----tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s---~sg~~~iWDlr~--~~pii~ls~~~~~~~ 208 (1049)
T KOG0307|consen 140 EILIWDLNKPE----TPFTPG--SQAPPSEIKCLSWNRKVSHILASGS---PSGRAVIWDLRK--KKPIIKLSDTPGRMH 208 (1049)
T ss_pred cEEEeccCCcC----CCCCCC--CCCCcccceEeccchhhhHHhhccC---CCCCceeccccC--CCcccccccCCCccc
Confidence 99999998643 222111 12234566665554 34677764 789999999986 466666665544 4
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCC---cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCce
Q 000055 2369 ARSISVFDNDLGSGSVSPLIVTGGKGG---DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGM 2445 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DG---tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~ 2445 (2548)
+..+.|+|++ ...+++++.|. .|.+||+|+..+ .++.
T Consensus 209 ~S~l~WhP~~------aTql~~As~dd~~PviqlWDlR~ass--P~k~-------------------------------- 248 (1049)
T KOG0307|consen 209 CSVLAWHPDH------ATQLLVASGDDSAPVIQLWDLRFASS--PLKI-------------------------------- 248 (1049)
T ss_pred eeeeeeCCCC------ceeeeeecCCCCCceeEeecccccCC--chhh--------------------------------
Confidence 7899999996 66777776554 799999986322 1122
Q ss_pred EEEcccCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcC
Q 000055 2446 LWYIPKAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2446 Iwdi~~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
+++|...|.++.|++.+ ++|+|++.|+.|.+|+.++|+.+.+++ ..+ ..+.++.|.|
T Consensus 249 ----~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p--------------~~~----nW~fdv~w~p 306 (1049)
T KOG0307|consen 249 ----LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP--------------AQG----NWCFDVQWCP 306 (1049)
T ss_pred ----hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC--------------CCC----cceeeeeecC
Confidence 27899999999999965 999999999999999999999999883 122 2357779998
Q ss_pred Ce---EEEEECCCcEEEEECCCCc
Q 000055 2525 RG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2525 dG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.. ++.++-||.|-|+.+.+..
T Consensus 307 r~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCcchhhhheeccceeeeeeecCC
Confidence 87 8899999999999997653
No 128
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.61 E-value=1.1e-14 Score=173.02 Aligned_cols=214 Identities=17% Similarity=0.231 Sum_probs=159.2
Q ss_pred CCCCCCCCeEEEEEccCC--CEEEEEeCCCcEEEEEcCCC--------cccccccCccceeccCCcccEE--EEcCCC-C
Q 000055 2266 PPPYALASISALQFDHYG--HRFASAALDGTVCTWQLEVG--------GRSNVRPMESCLCFSSHAMDVS--YITSSG-S 2332 (2548)
Q Consensus 2266 ~~~~H~~~VtsVaFSPdG--~~LaSGS~DGtVrVWDl~tg--------k~i~i~p~~s~~t~~gH~~~V~--afSpdG-s 2332 (2548)
....|.+.|..++-.+.+ .+.++=+..|.|.||++... -........+..++.+|...-. +|||-. -
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 344577888888888754 45555577899999998532 1111233345667778875444 477732 2
Q ss_pred EEEEEeccCCCCeEEEEECCCCCCCc-ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCcee
Q 000055 2333 VIAAAGHSSNGINVVVWDTLAPPTSS-RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTK 2411 (2548)
Q Consensus 2333 lLATgG~SS~DGtVrIWDl~t~~~k~-v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l 2411 (2548)
.+++|. .-+.|++|...++..+. ...+.+|+..|-.++|+|.. ..+++||+.||+|+|||+|.-....++
T Consensus 226 ~LlsGD---c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE------~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 226 RLLSGD---CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE------DGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred ccccCc---cccceEeeeeccCceeecCccccccccchhhhccCCcc------CceEEeeecCceEEEEEecCCCcccee
Confidence 356664 45789999987643332 35667899999999999996 789999999999999998842222332
Q ss_pred eeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---CcE
Q 000055 2412 KHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA---AQL 2488 (2548)
Q Consensus 2412 ~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T---gel 2488 (2548)
.+ ++|.+.|+.+.|+.+..+||+|+.||+++|||++. +++
T Consensus 297 ~~-------------------------------------kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~p 339 (440)
T KOG0302|consen 297 ST-------------------------------------KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQP 339 (440)
T ss_pred Ee-------------------------------------eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCc
Confidence 22 67999999999999988999999999999999984 556
Q ss_pred EEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCC
Q 000055 2489 VYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2489 l~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~s 2543 (2548)
+.+| +-|. +.|++|.|+|.. |+++|.|..|.+||+.-
T Consensus 340 VA~f--------------k~Hk----~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 340 VATF--------------KYHK----APITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ceeE--------------Eecc----CCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 6655 4565 456888999977 89999999999999963
No 129
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=4.4e-14 Score=164.89 Aligned_cols=251 Identities=18% Similarity=0.222 Sum_probs=166.9
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE---EcC-CCCEEEEEeccCCCC
Q 000055 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY---ITS-SGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a---fSp-dGslLATgG~SS~DG 2344 (2548)
+|.+-|.++.|++.|+++|+|+.|++|+|||.+.+.. . .........|.+.|.. .+| -|+.+|+++ .|+
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-~---W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS---~Dr 83 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-T---WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS---YDR 83 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-c---eEEeeeEEecCCcEEEEEecCccccceEEEEe---cCC
Confidence 4678899999999999999999999999999754421 1 1122235667776653 334 589999985 999
Q ss_pred eEEEEECCCCC-------CCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccC---ce---e
Q 000055 2345 NVVVWDTLAPP-------TSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATG---KT---K 2411 (2548)
Q Consensus 2345 tVrIWDl~t~~-------~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TG---k~---l 2411 (2548)
++.||.-.... .....++....+.|+.|.|.|.++ |-.+++++.||++|||+...+..- .. +
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl-----GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL-----GLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc-----ceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 99999752111 112445666778999999999975 559999999999999996321111 00 1
Q ss_pred eeecCCCCCCCccccccccCCCCCC----ccCCCC------CceEEE------------cccCCCCCEEEEEEeCC----
Q 000055 2412 KHKHSDRGGSSINTCAHADAQTGSG----SKPGDQ------NGMLWY------------IPKAHLGSVTRISTVPN---- 2465 (2548)
Q Consensus 2412 ~tl~~~~~~s~~~~~~vafSpdGk~----v~s~D~------sv~Iwd------------i~~gH~~~VtsLafSPd---- 2465 (2548)
+....+.........++.+++.... +.+.+. .++||. .+.+|..+|+.++|.|+
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRS 238 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCc
Confidence 1001111122222334556654322 223333 566665 23478999999999995
Q ss_pred CCEEEEEeCCCcEEEEECCCCc-EE-----------EEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEE
Q 000055 2466 TSLFLTGSKDGDVKLWDAKAAQ-LV-----------YHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCG 2531 (2548)
Q Consensus 2466 G~~LaSGS~DGtIrIWDl~Tge-ll-----------~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS 2531 (2548)
-.+||+++.|| |+||.+.... .+ ..++ -.....+.+|.+.| +++.|+-.| |++.|
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~------v~~vs~~~~H~~~V----Wrv~wNmtGtiLsStG 307 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLP------VEKVSELDDHNGEV----WRVRWNMTGTILSSTG 307 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccc------eEEeeeccCCCCce----EEEEEeeeeeEEeecC
Confidence 36899999999 9999987421 11 1110 00122357787544 667999999 78999
Q ss_pred CCCcEEEEECC
Q 000055 2532 GDGSVKLIQLE 2542 (2548)
Q Consensus 2532 ~DGtIrIWDL~ 2542 (2548)
.||+||+|+..
T Consensus 308 dDG~VRLWkan 318 (361)
T KOG2445|consen 308 DDGCVRLWKAN 318 (361)
T ss_pred CCceeeehhhh
Confidence 99999999854
No 130
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.60 E-value=6.2e-14 Score=174.77 Aligned_cols=286 Identities=15% Similarity=0.208 Sum_probs=197.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-----------CCEEEEEe
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-----------GHRFASAA 2290 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-----------G~~LaSGS 2290 (2548)
+.++.|++....|.....|.+++|||++.-..+.... ...+|..-|++|.--|. ...|.||+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~-------s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS 399 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCS-------SMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS 399 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEecccccccccee-------eeeeccceeeeeccccccccCcccccCCccceeEec
Confidence 5888999999999999999999999998754433321 23456678888877662 23589999
Q ss_pred CCCcEEEEEcCCCccccc------------ccCc--cceec--------c-------CCcccE--EEEcCCCCEEEEEec
Q 000055 2291 LDGTVCTWQLEVGGRSNV------------RPME--SCLCF--------S-------SHAMDV--SYITSSGSVIAAAGH 2339 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i------------~p~~--s~~t~--------~-------gH~~~V--~afSpdGslLATgG~ 2339 (2548)
.||+|++|+++.+....+ .+.. ..+.+ . +....+ .+++|+|+++|+|.
T Consensus 400 sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGD- 478 (1080)
T KOG1408|consen 400 SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGD- 478 (1080)
T ss_pred CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccC-
Confidence 999999999976321110 0000 00000 0 011123 25899999999986
Q ss_pred cCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCC
Q 000055 2340 SSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRG 2419 (2548)
Q Consensus 2340 SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~ 2419 (2548)
..|++++||+.. .+....+.+|...|.|+.|+...+ ..++|++++.|+-|.++|+.. ....++++ ..
T Consensus 479 --r~GnlrVy~Lq~--l~~~~~~eAHesEilcLeyS~p~~----~~kLLASasrdRlIHV~Dv~r--ny~l~qtl---d~ 545 (1080)
T KOG1408|consen 479 --RGGNLRVYDLQE--LEYTCFMEAHESEILCLEYSFPVL----TNKLLASASRDRLIHVYDVKR--NYDLVQTL---DG 545 (1080)
T ss_pred --ccCceEEEEehh--hhhhhheecccceeEEEeecCchh----hhHhhhhccCCceEEEEeccc--ccchhhhh---cc
Confidence 789999999975 556677889999999999986642 246999999999999999631 12222232 11
Q ss_pred CCCccccccccCCCCC---C-ccCCCCCceEEEcc---------cCC-----CCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q 000055 2420 GSSINTCAHADAQTGS---G-SKPGDQNGMLWYIP---------KAH-----LGSVTRISTVPNTSLFLTGSKDGDVKLW 2481 (2548)
Q Consensus 2420 ~s~~~~~~vafSpdGk---~-v~s~D~sv~Iwdi~---------~gH-----~~~VtsLafSPdG~~LaSGS~DGtIrIW 2481 (2548)
+ ...++.+-|..+|. . .++.|..+ .+++. ..| ...++.++.+|+.+++++++.|..|+||
T Consensus 546 H-SssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif 623 (1080)
T KOG1408|consen 546 H-SSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIF 623 (1080)
T ss_pred c-ccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEE
Confidence 1 22234444544442 2 33333332 23221 222 3478999999999999999999999999
Q ss_pred ECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000055 2482 DAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2482 Dl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
|+++|+..+.|++. ++|.+.. ..+..+|.| +++...|.++.++|+-+|.
T Consensus 624 ~i~sgKq~k~FKgs-----------~~~eG~l----IKv~lDPSgiY~atScsdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 624 DIESGKQVKSFKGS-----------RDHEGDL----IKVILDPSGIYLATSCSDKTLCFVDFVSGE 674 (1080)
T ss_pred eccccceeeeeccc-----------ccCCCce----EEEEECCCccEEEEeecCCceEEEEeccch
Confidence 99999999998533 4554322 245788999 8899999999999998875
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.59 E-value=8.4e-13 Score=161.24 Aligned_cols=266 Identities=14% Similarity=0.223 Sum_probs=194.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+....|||.++.++.....|.+..|++.++...+....+.++. ..-|.|++|.++|. ++||+.+|+|.||+..
T Consensus 203 v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~e------kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKRE------KKFVLCVTFLENGD-VITGDSGGNILIWSKG 275 (626)
T ss_pred EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccccc------ceEEEEEEEcCCCC-EEeecCCceEEEEeCC
Confidence 5788999999888888888999999999998887766655443 26799999999998 8899999999999997
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCC---------c------------
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTS---------S------------ 2358 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k---------~------------ 2358 (2548)
+.+.. .+.+ .|...|.+ .-.+|.++- || .|+.|..||-.....+ .
T Consensus 276 ~~~~~-------k~~~-aH~ggv~~L~~lr~GtllS-Gg---KDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~ 343 (626)
T KOG2106|consen 276 TNRIS-------KQVH-AHDGGVFSLCMLRDGTLLS-GG---KDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL 343 (626)
T ss_pred CceEE-------eEee-ecCCceEEEEEecCccEee-cC---ccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence 55321 1234 88888875 445776665 77 9999999994321100 0
Q ss_pred -----------------ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC
Q 000055 2359 -----------------RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS 2421 (2548)
Q Consensus 2359 -----------------v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s 2421 (2548)
.....+|.+..+.++.+|+ .++++|++.|+.+++|+- .+..-+.. -
T Consensus 344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps-------~~q~~T~gqdk~v~lW~~-----~k~~wt~~-----~ 406 (626)
T KOG2106|consen 344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS-------KNQLLTCGQDKHVRLWND-----HKLEWTKI-----I 406 (626)
T ss_pred EeeccceEEEeeecCCceEEEEecccceeeEEcCCC-------hhheeeccCcceEEEccC-----CceeEEEE-----e
Confidence 0123468888899999998 679999999999999992 13222210 0
Q ss_pred CccccccccCCCCCC-ccCCCCCceEEEccc-----CC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-EEEEe
Q 000055 2422 SINTCAHADAQTGSG-SKPGDQNGMLWYIPK-----AH--LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ-LVYHW 2492 (2548)
Q Consensus 2422 ~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~~-----gH--~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge-ll~tL 2492 (2548)
.....++.|.|.|.. ++...+.-.+.|..+ .| ..++++++|+|+|.+||.|+.|+.|.||.+..+. .....
T Consensus 407 ~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~ 486 (626)
T KOG2106|consen 407 EDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV 486 (626)
T ss_pred cCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence 112345678888843 444455445555321 12 6799999999999999999999999999997544 33333
Q ss_pred cccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEE
Q 000055 2493 SKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2493 ~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
.-|.+ +.++.+.||+|+ +.+-+.|-.|-+|.
T Consensus 487 --------------~k~~g---s~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 487 --------------GKCSG---SPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred --------------eeecC---ceeEEeeecCCCceEEeccCceEEEEEc
Confidence 11222 557889999999 78999999999993
No 132
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=9.2e-14 Score=162.16 Aligned_cols=268 Identities=15% Similarity=0.186 Sum_probs=178.0
Q ss_pred cCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCC
Q 000055 2217 VENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDG 2293 (2548)
Q Consensus 2217 l~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DG 2293 (2548)
+.+|. +.+++|+.||++|+|.+.|++|+||++..-..... +. ++.....+.-+.++|.||-+-++.. -...
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH-r~-----~R~nve~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH-RC-----IRQNVEYDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh-hH-----hhccccCCCceEEEECCCcceEEEEEccCC
Confidence 44554 79999999999999999999999999886321110 00 1111223457899999987655554 4455
Q ss_pred cEEEEEcCCCcc--c--ccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC
Q 000055 2294 TVCTWQLEVGGR--S--NVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367 (2548)
Q Consensus 2294 tVrVWDl~tgk~--i--~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~ 2367 (2548)
++++|.+...+. . ...+.........|...+.. ....+.+|+++. .|..|.+||++ ++.+..+.....
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas---~dt~i~lw~lk---Gq~L~~idtnq~ 229 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS---LDTKICLWDLK---GQLLQSIDTNQS 229 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEec---CCCcEEEEecC---Cceeeeeccccc
Confidence 899998753211 1 11111111223455556654 455678888884 89999999997 567777777677
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000055 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
.-+..+++|+ |.++++++..-.|++|.+-+...|..... .+++
T Consensus 230 ~n~~aavSP~-------GRFia~~gFTpDVkVwE~~f~kdG~fqev------------------------------~rvf 272 (420)
T KOG2096|consen 230 SNYDAAVSPD-------GRFIAVSGFTPDVKVWEPIFTKDGTFQEV------------------------------KRVF 272 (420)
T ss_pred cccceeeCCC-------CcEEEEecCCCCceEEEEEeccCcchhhh------------------------------hhhh
Confidence 7778888998 89999999999999999532222211100 1222
Q ss_pred EcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC----cEEEEecccccccccccCcccCCCCceeecEEEEEEc
Q 000055 2448 YIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA----QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVV 2523 (2548)
Q Consensus 2448 di~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg----ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafS 2523 (2548)
. ++||.+.|..++|+|+.+.++|.|.||+++|||..-. +--+.++ .+..+ +..-++ . -..++.+
T Consensus 273 ~-LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk---~g~~p----l~aag~---~-p~RL~ls 340 (420)
T KOG2096|consen 273 S-LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK---EGSAP----LHAAGS---E-PVRLELS 340 (420)
T ss_pred e-eccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhh---cCCcc----hhhcCC---C-ceEEEeC
Confidence 2 3799999999999999999999999999999998622 1111110 00000 111111 1 2378999
Q ss_pred CCe-EEEEECCCcEEEEECCCCc
Q 000055 2524 SRG-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2524 PdG-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
|+| +++.+...+++++..++|.
T Consensus 341 P~g~~lA~s~gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 341 PSGDSLAVSFGSDLKVFASEDGK 363 (420)
T ss_pred CCCcEEEeecCCceEEEEcccCc
Confidence 999 7777777889999887763
No 133
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.57 E-value=4.9e-14 Score=185.28 Aligned_cols=209 Identities=15% Similarity=0.200 Sum_probs=158.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc---------------eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK---------------ATATYGVLPAANVPPPYALASISALQFDHYGHRF 2286 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~---------------~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L 2286 (2548)
+.|+.|+|||.+||+|+.|+.|.||+..... ..+.+..+ .+|...|.+++|+|++.+|
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-------~~H~~DV~Dv~Wsp~~~~l 144 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-------RGHDSDVLDVNWSPDDSLL 144 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-------ecCCCccceeccCCCccEE
Confidence 7999999999999999999999999987310 11122222 3466999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCC-----------
Q 000055 2287 ASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLA----------- 2353 (2548)
Q Consensus 2287 aSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t----------- 2353 (2548)
++++.|++|.+|+..+.+.+ ..+.+|...|- .|.|-|++||+-+ +|++|+||++..
T Consensus 145 vS~s~DnsViiwn~~tF~~~--------~vl~~H~s~VKGvs~DP~Gky~ASqs---dDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 145 VSVSLDNSVIIWNAKTFELL--------KVLRGHQSLVKGVSWDPIGKYFASQS---DDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred EEecccceEEEEccccceee--------eeeecccccccceEECCccCeeeeec---CCceEEEEEcccceeeEeeccch
Confidence 99999999999999877433 34778887775 5999999999974 999999999542
Q ss_pred ---------------CCC------------------------CcceeeeccCCCeEEEEEccCCCCCCC-------CCC-
Q 000055 2354 ---------------PPT------------------------SSRASITCHEGGARSISVFDNDLGSGS-------VSP- 2386 (2548)
Q Consensus 2354 ---------------~~~------------------------k~v~sl~gHs~~VtSLafsP~dlg~gs-------~g~- 2386 (2548)
|++ +.-..+.||.+++.++.|+|. +.... ..+
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~-lfe~~~~ng~~~~~~~ 292 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK-LFERNNKNGTSTQPNC 292 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChH-HhccccccCCccCCCc
Confidence 000 011234589999999999885 21111 121
Q ss_pred ---EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEe
Q 000055 2387 ---LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTV 2463 (2548)
Q Consensus 2387 ---lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafS 2463 (2548)
.+++|+.|++|.||. ....+.+...+ .-....|..++|+
T Consensus 293 ~y~i~AvgSqDrSlSVW~---T~~~RPl~vi~-----------------------------------~lf~~SI~DmsWs 334 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSLSVWN---TALPRPLFVIH-----------------------------------NLFNKSIVDMSWS 334 (942)
T ss_pred ceEEEEEecCCccEEEEe---cCCCCchhhhh-----------------------------------hhhcCceeeeeEc
Confidence 688899999999999 33444433320 2245689999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCc
Q 000055 2464 PNTSLFLTGSKDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2464 PdG~~LaSGS~DGtIrIWDl~Tge 2487 (2548)
|||-.|+.+|.||+|.+..++..+
T Consensus 335 pdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 335 PDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCCCeEEEEecCCeEEEEEcchHH
Confidence 999999999999999999987543
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.57 E-value=5.8e-14 Score=162.40 Aligned_cols=224 Identities=21% Similarity=0.314 Sum_probs=159.7
Q ss_pred CCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCcccc----cccCcc---ceeccCCcccEEE---EcCCCCEEEEEe
Q 000055 2270 ALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGRSN----VRPMES---CLCFSSHAMDVSY---ITSSGSVIAAAG 2338 (2548)
Q Consensus 2270 H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl~tgk~i~----i~p~~s---~~t~~gH~~~V~a---fSpdGslLATgG 2338 (2548)
|.+.|.++...+ .|+++++|+.||.|.+||++...... +..... .+-..+|...|.. +.-|.-.+.++
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss- 120 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS- 120 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc-
Confidence 568999999988 69999999999999999997542100 000000 1113456666653 44455566665
Q ss_pred ccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC
Q 000055 2339 HSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR 2418 (2548)
Q Consensus 2339 ~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~ 2418 (2548)
|.|.++++||+.+ .+....|+ -.+.|.+-+++|-. ....++++|..|-.|++-| +++|.+...+
T Consensus 121 --SFDhtlKVWDtnT--lQ~a~~F~-me~~VYshamSp~a----~sHcLiA~gtr~~~VrLCD---i~SGs~sH~L---- 184 (397)
T KOG4283|consen 121 --SFDHTLKVWDTNT--LQEAVDFK-MEGKVYSHAMSPMA----MSHCLIAAGTRDVQVRLCD---IASGSFSHTL---- 184 (397)
T ss_pred --cccceEEEeeccc--ceeeEEee-cCceeehhhcChhh----hcceEEEEecCCCcEEEEe---ccCCcceeee----
Confidence 5999999999986 44444443 35678887877763 1133888899999999999 7788887776
Q ss_pred CCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCC-cEEEEecccc
Q 000055 2419 GGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTS-LFLTGSKDGDVKLWDAKAA-QLVYHWSKLH 2496 (2548)
Q Consensus 2419 ~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~-~LaSGS~DGtIrIWDl~Tg-ell~tL~~~H 2496 (2548)
.||.+.|.+|.|+|... .|+|||.||.|++||++.. .+...+....
T Consensus 185 --------------------------------sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 185 --------------------------------SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred --------------------------------ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 89999999999999765 5789999999999999864 5666664322
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000055 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
.+.+-..++-..|.+. |..++|..+| +++++.|..+++|+..+|.-
T Consensus 233 ~k~~p~~~~n~ah~gk----vngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 233 TKRPPILKTNTAHYGK----VNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred CccCccccccccccce----eeeeeecccchhhhhccCccceEEeecccCcc
Confidence 1222111123455544 5667999999 99999999999999988753
No 135
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=4.9e-14 Score=170.86 Aligned_cols=242 Identities=17% Similarity=0.205 Sum_probs=174.5
Q ss_pred CCCEEEEEECCCeEEEEEcCCC-ce--eEEEec--------cCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEE
Q 000055 2230 LRPFFLVGSSNTHIYLWEFGKD-KA--TATYGV--------LPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCT 2297 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg-~~--l~t~~~--------l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrV 2297 (2548)
-|+|+|.|+.|..|.|||++-- .. ..++.. .........+|++.|.++.|+.. .+.||+|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3789999999999999998721 11 111110 00011124578899999999885 678999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000055 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
||+.++++.. ++..|...|.+ |.| ....+++|+ .|++|.+.|.|.+ ...-..+ .-.+.|-.++|
T Consensus 271 WD~~~g~p~~--------s~~~~~k~Vq~l~wh~~~p~~LLsGs---~D~~V~l~D~R~~-~~s~~~w-k~~g~VEkv~w 337 (463)
T KOG0270|consen 271 WDVDTGKPKS--------SITHHGKKVQTLEWHPYEPSVLLSGS---YDGTVALKDCRDP-SNSGKEW-KFDGEVEKVAW 337 (463)
T ss_pred EEcCCCCcce--------ehhhcCCceeEEEecCCCceEEEecc---ccceEEeeeccCc-cccCceE-EeccceEEEEe
Confidence 9999997543 35567777764 554 456777874 8999999999963 2222222 23678999999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000055 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
.|.. ...++++..||+|+-+|+|. .++++.++ ++|.
T Consensus 338 ~~~s------e~~f~~~tddG~v~~~D~R~--~~~~vwt~------------------------------------~AHd 373 (463)
T KOG0270|consen 338 DPHS------ENSFFVSTDDGTVYYFDIRN--PGKPVWTL------------------------------------KAHD 373 (463)
T ss_pred cCCC------ceeEEEecCCceEEeeecCC--CCCceeEE------------------------------------Eecc
Confidence 9985 67888999999999999985 34666555 7899
Q ss_pred CCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEE
Q 000055 2455 GSVTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSC 2530 (2548)
Q Consensus 2455 ~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSG 2530 (2548)
+.|.++++++. ..+++|+|.|+.|++|++..-+.-.+. .|.-.+ ....+.++.|+- ++.|
T Consensus 374 ~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~---------------~~~~~~-~rl~c~~~~~~~a~~la~G 437 (463)
T KOG0270|consen 374 DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK---------------EHSFKL-GRLHCFALDPDVAFTLAFG 437 (463)
T ss_pred CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc---------------cccccc-cceeecccCCCcceEEEec
Confidence 99999999985 468899999999999998754432211 111111 113444666665 8889
Q ss_pred ECCCcEEEEECCCC
Q 000055 2531 GGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2531 S~DGtIrIWDL~sg 2544 (2548)
|..+.++|||+.++
T Consensus 438 G~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 438 GEKAVLRVWDIFTN 451 (463)
T ss_pred CccceEEEeecccC
Confidence 99899999999765
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.57 E-value=8.5e-13 Score=158.24 Aligned_cols=236 Identities=13% Similarity=0.110 Sum_probs=163.1
Q ss_pred EEEEEEcCCCCEE-EEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEE
Q 000055 2222 TRAFSSHPLRPFF-LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~L-ASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWD 2299 (2548)
+.+++|+|+|+.+ ++++.++.|++||..+++....+.. + ..+..++|+|+++.++++ +.|+.|++||
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----------~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d 101 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS----------G-PDPELFALHPNGKILYIANEDDNLVTVID 101 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC----------C-CCccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence 3568889999976 5677899999999998877665421 1 235678999999977655 5689999999
Q ss_pred cCCCcccccccCccceecc-CCcccEEEEcCCCCEEEEEeccCCC-CeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000055 2300 LEVGGRSNVRPMESCLCFS-SHAMDVSYITSSGSVIAAAGHSSNG-INVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~-gH~~~V~afSpdGslLATgG~SS~D-GtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+++++.... +. ++...-..++|+|++++++. .+ ..+.+||..+ .+....+. ....+.++.|+|+
T Consensus 102 ~~~~~~~~~--------~~~~~~~~~~~~~~dg~~l~~~~---~~~~~~~~~d~~~--~~~~~~~~-~~~~~~~~~~s~d 167 (300)
T TIGR03866 102 IETRKVLAE--------IPVGVEPEGMAVSPDGKIVVNTS---ETTNMAHFIDTKT--YEIVDNVL-VDQRPRFAEFTAD 167 (300)
T ss_pred CCCCeEEeE--------eeCCCCcceEEECCCCCEEEEEe---cCCCeEEEEeCCC--CeEEEEEE-cCCCccEEEECCC
Confidence 987643221 11 11112245899999999875 34 4577889865 33333332 2345678899988
Q ss_pred CCCCCCCCCEE-EEEeCCCcEEEEeCCccccCceeeeecCC--CCC-CCccccccccCCCCCC--c-cCCCCCceEEEcc
Q 000055 2378 DLGSGSVSPLI-VTGGKGGDVGIHDFRYIATGKTKKHKHSD--RGG-SSINTCAHADAQTGSG--S-KPGDQNGMLWYIP 2450 (2548)
Q Consensus 2378 dlg~gs~g~lL-VSGS~DGtVrLWDLR~l~TGk~l~tl~~~--~~~-s~~~~~~vafSpdGk~--v-~s~D~sv~Iwdi~ 2450 (2548)
+..+ +++..+|.|++|| +.+++.+..+... ... .......+.++++|+. + ...++.+.+|+..
T Consensus 168 -------g~~l~~~~~~~~~v~i~d---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 168 -------GKELWVSSEIGGTVSVID---VATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred -------CCEEEEEcCCCCEEEEEE---cCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 5666 4555799999999 4556665544211 111 1112235678999986 3 3445678899853
Q ss_pred c-------CCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCcEEEEe
Q 000055 2451 K-------AHLGSVTRISTVPNTSLFLTG-SKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2451 ~-------gH~~~VtsLafSPdG~~LaSG-S~DGtIrIWDl~Tgell~tL 2492 (2548)
. .+...+.+++|+|+|++|+++ +.+|.|++||+++++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 238 TYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred CCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 2 244578899999999999887 46999999999999999887
No 137
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.55 E-value=9.1e-14 Score=174.95 Aligned_cols=225 Identities=17% Similarity=0.271 Sum_probs=167.3
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE---EEc-CCCCEEEEEeccCCCC
Q 000055 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS---YIT-SSGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~---afS-pdGslLATgG~SS~DG 2344 (2548)
+|...|..+++.+. ..+++++.||++++|+-..++.... ..+.+|.+-|. ++. .++-.+++|+ .|.
T Consensus 12 gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~------~~~~~~~g~i~~~i~y~e~~~~~l~~g~---~D~ 81 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLET------HAFEGPKGFIANSICYAESDKGRLVVGG---MDT 81 (745)
T ss_pred cCccchheeEecCC-eEEeecCCCCceeeeeccCcccccc------eecccCcceeeccceeccccCcceEeec---ccc
Confidence 46688888887644 4799999999999999865543322 22445554333 233 3445677776 899
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000055 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
+|.+|.... ..+...+.+|...|.++....+ + .++||+-|.++++|-.. ++...+ .++....
T Consensus 82 ~i~v~~~~~--~~P~~~LkgH~snVC~ls~~~~-------~-~~iSgSWD~TakvW~~~-----~l~~~l---~gH~asV 143 (745)
T KOG0301|consen 82 TIIVFKLSQ--AEPLYTLKGHKSNVCSLSIGED-------G-TLISGSWDSTAKVWRIG-----ELVYSL---QGHTASV 143 (745)
T ss_pred eEEEEecCC--CCchhhhhccccceeeeecCCc-------C-ceEecccccceEEecch-----hhhccc---CCcchhe
Confidence 999999976 7889999999999999986655 3 49999999999999853 332222 2233333
Q ss_pred ccccccCCCCCC-ccCCCCCceEEE------cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccc
Q 000055 2425 TCAHADAQTGSG-SKPGDQNGMLWY------IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE 2497 (2548)
Q Consensus 2425 ~~~vafSpdGk~-v~s~D~sv~Iwd------i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs 2497 (2548)
. .+..-|++.+ .++.|.++++|. ++.+|...|+.+++-|++ .|++++.||.|+.|++ +|+++.++
T Consensus 144 W-Av~~l~e~~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~----- 215 (745)
T KOG0301|consen 144 W-AVASLPENTYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEM----- 215 (745)
T ss_pred e-eeeecCCCcEEeccCcceeeeccCCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeee-----
Confidence 3 3344444455 889999999997 678999999999998765 4678999999999999 78888766
Q ss_pred ccccccCcccCCCCceeecEEEEE-EcCCe-EEEEECCCcEEEEECC
Q 000055 2498 RHTFLQPSSRGFGGVVRAGVTDIQ-VVSRG-FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~a~VtsLa-fSPdG-LaSGS~DGtIrIWDL~ 2542 (2548)
.||.+ -|+++. ..+++ ++|+|.|++++||+..
T Consensus 216 ---------~ghtn----~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 216 ---------HGHTN----FVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ---------eccce----EEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 56764 456667 45555 9999999999999965
No 138
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.55 E-value=1.6e-13 Score=158.86 Aligned_cols=264 Identities=19% Similarity=0.240 Sum_probs=175.3
Q ss_pred EEEEEEcCCCCE-EEEEECC-------CeEEEEEcCCCceeEE---EeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000055 2222 TRAFSSHPLRPF-FLVGSSN-------THIYLWEFGKDKATAT---YGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2222 V~~VsfSPdG~~-LASGS~D-------GsVrLWDl~tg~~l~t---~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
|..++-+|..+. |+|...+ ..+.||.+........ +.... .+.. .+-+.|.|+.|.|++.++++-.
T Consensus 66 vw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~--~Ldt-eavg~i~cvew~Pns~klasm~ 142 (370)
T KOG1007|consen 66 VWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA--SLDT-EAVGKINCVEWEPNSDKLASMD 142 (370)
T ss_pred eehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh--cCCH-HHhCceeeEEEcCCCCeeEEec
Confidence 477777886554 4443221 3478999874321111 11100 0011 2336899999999999998876
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcC--CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC
Q 000055 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITS--SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSp--dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
|..|.+|+++.+..+. ....... -.++..... .|+| +|+.+++. .|+++..||+++. .+....-.+|.
T Consensus 143 -dn~i~l~~l~ess~~v-aev~ss~-s~e~~~~ftsg~WspHHdgnqv~tt----~d~tl~~~D~RT~-~~~~sI~dAHg 214 (370)
T KOG1007|consen 143 -DNNIVLWSLDESSKIV-AEVLSSE-SAEMRHSFTSGAWSPHHDGNQVATT----SDSTLQFWDLRTM-KKNNSIEDAHG 214 (370)
T ss_pred -cCceEEEEcccCcchh-eeecccc-cccccceecccccCCCCccceEEEe----CCCcEEEEEccch-hhhcchhhhhc
Confidence 8899999998775421 1000000 112233333 3666 78899987 5999999999962 22333445799
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceE
Q 000055 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGML 2446 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~I 2446 (2548)
..|..+.|+|+. ..+|+|||.||.|++||.|+ +...++.+
T Consensus 215 q~vrdlDfNpnk------q~~lvt~gDdgyvriWD~R~--tk~pv~el-------------------------------- 254 (370)
T KOG1007|consen 215 QRVRDLDFNPNK------QHILVTCGDDGYVRIWDTRK--TKFPVQEL-------------------------------- 254 (370)
T ss_pred ceeeeccCCCCc------eEEEEEcCCCccEEEEeccC--CCcccccc--------------------------------
Confidence 999999999995 66999999999999999875 23334443
Q ss_pred EEcccCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEecc-----------cccccccccC----cccCCC
Q 000055 2447 WYIPKAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVYHWSK-----------LHERHTFLQP----SSRGFG 2510 (2548)
Q Consensus 2447 wdi~~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~tL~~-----------~Hs~hsfl~~----tl~GH~ 2510 (2548)
.+|..+|++|.|+| ..+++.|||.|..|.+|...+-.-...+.. ..+++..++. ++..|.
T Consensus 255 ----~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 255 ----PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred ----CCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence 78999999999999 468899999999999998764321111111 1112222222 466677
Q ss_pred CceeecEEEEEEcCCe---EEEEECCCcEEEEECCCC
Q 000055 2511 GVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2511 ~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
+ .|++++||... ||+-|.||.+.|=+++..
T Consensus 331 D----SVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 331 D----SVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred c----ceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 5 45777999777 899999999998777653
No 139
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.54 E-value=3.4e-13 Score=157.44 Aligned_cols=229 Identities=14% Similarity=0.158 Sum_probs=157.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC--EEEEEeCCCcEEEEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH--RFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~--~LaSGS~DGtVrVWD 2299 (2548)
+.+++|+.+|..+++|+.|+.+++||+.+++. ..+. .|.++|..+.|-+... .|+||+.|++|+.||
T Consensus 75 vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~----------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 75 VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVA----------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred eEEEEEccCCceEEeeccCCceEEEEccCCCe-eeee----------ecccceeEEEEecCCCcceeEecccccceeecc
Confidence 79999999999999999999999999999954 3432 2669999999988655 899999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000055 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
.+....+.. + .-..+|.+.+--..+++++. .++.|.+|+++.+..+.......-.-.++||+...+
T Consensus 144 ~R~~~pv~t--------~-~LPeRvYa~Dv~~pm~vVat---a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d-- 209 (347)
T KOG0647|consen 144 TRSSNPVAT--------L-QLPERVYAADVLYPMAVVAT---AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQD-- 209 (347)
T ss_pred cCCCCeeee--------e-eccceeeehhccCceeEEEe---cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEec--
Confidence 986542221 1 11234444333334555554 689999999976433322222223346789998888
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000055 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
....+.|+-.|.+.+..+. .+.....+.. ..+. +. ... .+.--+|.+
T Consensus 210 -----~~~~alGsiEGrv~iq~id---~~~~~~nFtF-kCHR-----------~~---~~~----------~~~VYaVNs 256 (347)
T KOG0647|consen 210 -----KDGFALGSIEGRVAIQYID---DPNPKDNFTF-KCHR-----------ST---NSV----------NDDVYAVNS 256 (347)
T ss_pred -----CCceEeeeecceEEEEecC---CCCccCceeE-EEec-----------cC---CCC----------CCceEEecc
Confidence 4556999999999999853 3221111100 0000 00 000 001126789
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000055 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
|+|+|.-..|+|+|.||+..+||-..+..+++. ..|. ..|++.+|+.+|
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s--------------~~~~----qpItcc~fn~~G 305 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS--------------ETHP----QPITCCSFNRNG 305 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhhhhhhcc--------------CcCC----CccceeEecCCC
Confidence 999999999999999999999998877777654 3444 345777999999
No 140
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=5.8e-13 Score=149.15 Aligned_cols=231 Identities=18% Similarity=0.215 Sum_probs=178.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC----CCEEEEEe-CCCcEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY----GHRFASAA-LDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd----G~~LaSGS-~DGtVr 2296 (2548)
+.|.+|+|.|.++++|+.|.+|++..++...+.. .+|......|.+.|..++|-.+ +..|++++ .|..|.
T Consensus 92 iyc~~ws~~geliatgsndk~ik~l~fn~dt~~~-----~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy 166 (350)
T KOG0641|consen 92 IYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA-----TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIY 166 (350)
T ss_pred EEEEEecCccCeEEecCCCceEEEEecccccccc-----cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEE
Confidence 5899999999999999999999998877554322 2444455668899999999653 55666654 345666
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEE-EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee--cc-----CCC
Q 000055 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSY-ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT--CH-----EGG 2368 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~a-fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~--gH-----s~~ 2368 (2548)
+-|..+|+ ..+.+.+|+.-|.+ ++++|-.+++| |.|.+|++||++. ..++..+. .| ++.
T Consensus 167 ~tdc~~g~--------~~~a~sghtghilalyswn~~m~~sg---sqdktirfwdlrv--~~~v~~l~~~~~~~glessa 233 (350)
T KOG0641|consen 167 ITDCGRGQ--------GFHALSGHTGHILALYSWNGAMFASG---SQDKTIRFWDLRV--NSCVNTLDNDFHDGGLESSA 233 (350)
T ss_pred EeecCCCC--------cceeecCCcccEEEEEEecCcEEEcc---CCCceEEEEeeec--cceeeeccCcccCCCcccce
Confidence 66666554 23457889988886 78889999998 4999999999987 34554443 23 356
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceE
Q 000055 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGML 2446 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~I 2446 (2548)
|.++++.|. |.+|++|-.|....+||+| -++.++.++. ....+.++-|+|...+ .++.|..+++
T Consensus 234 vaav~vdps-------grll~sg~~dssc~lydir---g~r~iq~f~p----hsadir~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 234 VAAVAVDPS-------GRLLASGHADSSCMLYDIR---GGRMIQRFHP----HSADIRCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred eEEEEECCC-------cceeeeccCCCceEEEEee---CCceeeeeCC----CccceeEEEeCCCceEEEEecccceEEE
Confidence 899999998 8999999999999999965 5777777632 2344667889998777 6777888887
Q ss_pred EEcc------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000055 2447 WYIP------------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2447 wdi~------------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
-|+. -.|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 300 tdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 300 TDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 7742 2588888899999999999999999999999764
No 141
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.53 E-value=2.5e-14 Score=169.41 Aligned_cols=229 Identities=17% Similarity=0.186 Sum_probs=167.1
Q ss_pred CCCCCCeEEEEEccCC-CEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeE
Q 000055 2268 PYALASISALQFDHYG-HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG-~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtV 2346 (2548)
.+|.+.|.+++=+|.. ..+++|+.||.|++||+.+..+. .++..|.+.|..+.-+...++++| +|++|
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~--------~~f~AH~G~V~Gi~v~~~~~~tvg---dDKtv 131 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI--------RTFKAHEGLVRGICVTQTSFFTVG---DDKTV 131 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--------heeecccCceeeEEecccceEEec---CCcce
Confidence 3577999999999975 78999999999999999865433 347888888875444446777777 89999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000055 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
+.|.+.. .+.+++.+ .+.+..+.-+.. +..++|+|. .|.|||.. ....++.+ ......+.
T Consensus 132 K~wk~~~---~p~~tilg-~s~~~gIdh~~~-------~~~FaTcGe--~i~IWD~~---R~~Pv~sm----swG~Dti~ 191 (433)
T KOG0268|consen 132 KQWKIDG---PPLHTILG-KSVYLGIDHHRK-------NSVFATCGE--QIDIWDEQ---RDNPVSSM----SWGADSIS 191 (433)
T ss_pred eeeeccC---Ccceeeec-cccccccccccc-------cccccccCc--eeeecccc---cCCcccee----ecCCCcee
Confidence 9999875 36666654 445666664444 568888876 48999953 23344333 12223344
Q ss_pred ccccCCCCCC---ccCCCCCceEEEcccCC-------CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-EEEEeccc
Q 000055 2427 AHADAQTGSG---SKPGDQNGMLWYIPKAH-------LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ-LVYHWSKL 2495 (2548)
Q Consensus 2427 ~vafSpdGk~---v~s~D~sv~Iwdi~~gH-------~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge-ll~tL~~~ 2495 (2548)
.+.|+|.... .+..|+.+.++|..++. .-.-+.++|+|.+-.|++|++|..++.+|++.-+ ++..
T Consensus 192 svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v---- 267 (433)
T KOG0268|consen 192 SVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV---- 267 (433)
T ss_pred EEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchh----
Confidence 5667776443 56688999999975542 2234578999988889999999999999998532 2221
Q ss_pred ccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000055 2496 HERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.++|. ++|.+++|||.| |+|||.|.+||||.+..+.
T Consensus 268 ----------~~dhv----sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 268 ----------HKDHV----SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred ----------hcccc----eeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence 25665 567899999999 9999999999999998764
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=6.5e-13 Score=155.20 Aligned_cols=276 Identities=16% Similarity=0.131 Sum_probs=183.2
Q ss_pred CccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc
Q 000055 2215 ATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2548)
Q Consensus 2215 ~tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt 2294 (2548)
.++......|+.|++-|.+||+|+.||.|.|||+.|-..-..+ ..|..+|++++|+++|++|+|++.|..
T Consensus 19 ~tld~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l----------saH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 19 HTLDNPLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML----------SAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred eeccCCccceEEeccCcceeeeeccCCcEEEEEccccchhhhh----------hccccceeEEEecCCCCEeeeecCCce
Confidence 3444444789999999999999999999999999986644443 236689999999999999999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEE--EcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceee-ecc-CCCe
Q 000055 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCH-EGGA 2369 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gH-s~~V 2369 (2548)
|++||+..|....... + ..+|+. |.|.. +.+++.- .+..-.+-++..+....+..- .+. +...
T Consensus 89 i~lwDl~~gs~l~rir------f---~spv~~~q~hp~k~n~~va~~---~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa 156 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRIR------F---DSPVWGAQWHPRKRNKCVATI---MEESPVVIDFSDPKHSVLPKDDDGDLNSSA 156 (405)
T ss_pred eEEEeccCCCceeEEE------c---cCccceeeeccccCCeEEEEE---ecCCcEEEEecCCceeeccCCCcccccccc
Confidence 9999999886443211 1 233332 44432 2322221 333344444432111111000 000 1111
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEE
Q 000055 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLW 2447 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iw 2447 (2548)
.+..|.+. |+++++|...|.+.++| ..+-+++..++. .....+..+-++..|+. +.+.|+.++.+
T Consensus 157 s~~~fdr~-------g~yIitGtsKGkllv~~---a~t~e~vas~ri---ts~~~IK~I~~s~~g~~liiNtsDRvIR~y 223 (405)
T KOG1273|consen 157 SHGVFDRR-------GKYIITGTSKGKLLVYD---AETLECVASFRI---TSVQAIKQIIVSRKGRFLIINTSDRVIRTY 223 (405)
T ss_pred ccccccCC-------CCEEEEecCcceEEEEe---cchheeeeeeee---chheeeeEEEEeccCcEEEEecCCceEEEE
Confidence 22345555 88999999999999999 555566665522 22233455667777776 77888889999
Q ss_pred Eccc----CCC---------------CCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEecccccccccccCccc
Q 000055 2448 YIPK----AHL---------------GSVTRISTVPNTSLFLTGSK-DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2448 di~~----gH~---------------~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~ 2507 (2548)
++.. +.. -.-.++.|+.+|.|++.|+. -..++||.-..|.+++.+.
T Consensus 224 e~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-------------- 289 (405)
T KOG1273|consen 224 EISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-------------- 289 (405)
T ss_pred ehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec--------------
Confidence 8531 111 12357889999999998875 4479999999999998772
Q ss_pred CCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000055 2508 GFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
|-.+ ....++.|+|-. +++- +.|+|+||....
T Consensus 290 G~kg---E~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 290 GTKG---EELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred CCch---hheeecccccceeeeeec-cCCceEEEEeec
Confidence 2111 123567899988 4444 889999998753
No 143
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.5e-13 Score=162.55 Aligned_cols=150 Identities=20% Similarity=0.326 Sum_probs=113.8
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000055 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
..+|++-..|+|++||..+++.+..++.++ ..+..++|.. ..+.+.+|+.||+|++||++...+....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~----------~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~ 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP----------ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI 110 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCC----------CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe
Confidence 468889999999999999999888887644 5577888876 5788999999999999999977544322
Q ss_pred cCccceeccCCc-ccEEEEc--CCCCEEEEEecc-CCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCC
Q 000055 2310 PMESCLCFSSHA-MDVSYIT--SSGSVIAAAGHS-SNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVS 2385 (2548)
Q Consensus 2310 p~~s~~t~~gH~-~~V~afS--pdGslLATgG~S-S~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g 2385 (2548)
.+..+. ....++. ..++++++|..- -.+-.|.+||+|........-...|.+.|+++.|+|++ .
T Consensus 111 ------~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~------p 178 (376)
T KOG1188|consen 111 ------SWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD------P 178 (376)
T ss_pred ------eccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC------C
Confidence 133343 3334443 356777776311 14667999999974222344556899999999999997 8
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 000055 2386 PLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2386 ~lLVSGS~DGtVrLWDLR 2403 (2548)
++|+||+.||.|.+||+.
T Consensus 179 nlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CeEEeecccceEEeeecC
Confidence 899999999999999965
No 144
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=4.7e-13 Score=173.15 Aligned_cols=291 Identities=15% Similarity=0.200 Sum_probs=193.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrVWD 2299 (2548)
...+.|||-.+.++++...-.|++||++.++....|.... .-...|+.+.+-. |..++++|+.||.|+||+
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-------~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-------FPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC-------CCCCccceeeeecccchhheeeeccCceEEEec
Confidence 3567889999999999988899999999998877765311 1236799999965 567899999999999998
Q ss_pred cCCCcccccccCccceeccC------CcccEEEEcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEE
Q 000055 2300 LEVGGRSNVRPMESCLCFSS------HAMDVSYITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARS 2371 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~g------H~~~V~afSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtS 2371 (2548)
--.....+..-......+.+ ..+.|..|... |.++++ | +-+.|+|||... ...++.+. +-+..|++
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t-G---d~r~IRIWDa~~--E~~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT-G---DVRSIRIWDAHK--EQVVADIPYGSSTLVTA 1213 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEec-C---CeeEEEEEeccc--ceeEeecccCCCcccee
Confidence 53221001010111111111 22344455544 445555 4 578999999975 34444444 34456777
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCC--C-ccCCCCCceEEE
Q 000055 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGS--G-SKPGDQNGMLWY 2448 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk--~-v~s~D~sv~Iwd 2448 (2548)
+.-.-.+ |++++.|..||.|++||.|+......+...+.+.. ...+..+.+.+.|. + .++.+|.+++||
T Consensus 1214 LS~~~~~------gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~--~~~Iv~~slq~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1214 LSADLVH------GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND--VEPIVHLSLQRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred ecccccC------CceEEEeecCCceEEeecccCCccccceeecccCC--cccceeEEeecCCCcceeeeccCCeEEEEe
Confidence 7644443 78999999999999999986433322222211111 11133445555433 3 788899999999
Q ss_pred ccc----------CCC--C-CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceee
Q 000055 2449 IPK----------AHL--G-SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2449 i~~----------gH~--~-~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
+.. .|. + ..+++..|++...+|+|+. +.|+||++. |+.+..++ .+ ..| -|. .+ .
T Consensus 1286 lR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k-~n--~~F-----~~q--~~-g 1352 (1387)
T KOG1517|consen 1286 LRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIK-YN--PGF-----MGQ--RI-G 1352 (1387)
T ss_pred cccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccc-cC--ccc-----ccC--cC-C
Confidence 633 232 3 5899999999999999998 999999986 55555442 11 111 111 12 3
Q ss_pred cEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000055 2516 GVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2516 ~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
.+.+++|+|.. +|+|+.|.+|.||..+++.+
T Consensus 1353 s~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred CcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence 45889999999 88999999999999887654
No 145
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=8e-13 Score=155.19 Aligned_cols=247 Identities=14% Similarity=0.181 Sum_probs=169.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+.+|.+ ...+++|+-||.|+++|+.++..... ..|.+.|++|.+++....+++|+.|++|++||.+
T Consensus 57 lL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i-----------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 57 LLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI-----------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred eeeeeccC-CceEEEeccCceEEEEEecCCcceee-----------ccCCCceEEEEeeccCCeEEEcccCccEEEEecc
Confidence 56667766 55789999999999999998865433 2266999999999988899999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-eeeccCCCeEEEEEccCCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-sl~gHs~~VtSLafsP~dlg 2380 (2548)
...... -......|.+.+-.|+.|++|+ .|..|.+||++.- ....+ .-..-.-.++||+..|+
T Consensus 125 ~~~~~~---------~~d~~kkVy~~~v~g~~LvVg~---~~r~v~iyDLRn~-~~~~q~reS~lkyqtR~v~~~pn--- 188 (323)
T KOG1036|consen 125 NKVVVG---------TFDQGKKVYCMDVSGNRLVVGT---SDRKVLIYDLRNL-DEPFQRRESSLKYQTRCVALVPN--- 188 (323)
T ss_pred cccccc---------ccccCceEEEEeccCCEEEEee---cCceEEEEEcccc-cchhhhccccceeEEEEEEEecC---
Confidence 532111 1122347888888899999986 8999999999863 11221 11123346899999996
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000055 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
+.-.+.++-||.|.+=.+. .....+.. ..+|---. ...++ ..---+|.++
T Consensus 189 ----~eGy~~sSieGRVavE~~d---~s~~~~sk------------kyaFkCHr---~~~~~--------~~~~yPVNai 238 (323)
T KOG1036|consen 189 ----GEGYVVSSIEGRVAVEYFD---DSEEAQSK------------KYAFKCHR---LSEKD--------TEIIYPVNAI 238 (323)
T ss_pred ----CCceEEEeecceEEEEccC---CchHHhhh------------ceeEEeee---cccCC--------ceEEEEecee
Confidence 5577888999998876632 11111110 00000000 00000 0112379999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEEC-----C
Q 000055 2461 STVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG-----D 2533 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~-----D 2533 (2548)
+|+|-...|+||+.||.|.+||+.+.+.+..+. ... ..|..++|+.+| ||.++. .
T Consensus 239 ~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~--------------~~~----~SI~slsfs~dG~~LAia~sy~ye~~ 300 (323)
T KOG1036|consen 239 AFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA--------------KYE----TSISSLSFSMDGSLLAIASSYQYERA 300 (323)
T ss_pred EeccccceEEecCCCceEEEccCcchhhhhhcc--------------CCC----CceEEEEeccCCCeEEEEechhhhcC
Confidence 999999999999999999999999998887661 111 236778999999 665543 2
Q ss_pred Cc-------EEEEECCCC
Q 000055 2534 GS-------VKLIQLEDY 2544 (2548)
Q Consensus 2534 Gt-------IrIWDL~sg 2544 (2548)
.+ |.|.++.+.
T Consensus 301 ~~~~~~~~~i~I~~l~d~ 318 (323)
T KOG1036|consen 301 DTPTHERNAIFIRDLTDY 318 (323)
T ss_pred CCCCCCCCceEEEecccc
Confidence 33 777777654
No 146
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.52 E-value=4.4e-13 Score=157.09 Aligned_cols=243 Identities=19% Similarity=0.241 Sum_probs=175.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc------------eeEEEeccCCCCCCCCCCCCCeEEEEEc-------cC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK------------ATATYGVLPAANVPPPYALASISALQFD-------HY 2282 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~------------~l~t~~~l~ghs~~~~~H~~~VtsVaFS-------Pd 2282 (2548)
.....|+|||..|++-+.|..+++|++...- ....++.. ..+.|...+|- |+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~---------eg~tvydy~wYs~M~s~qP~ 122 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ---------EGETVYDYCWYSRMKSDQPS 122 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec---------cCCEEEEEEeeeccccCCCc
Confidence 4667899999999999999999999985211 01111111 12678888885 56
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccE-----EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCC
Q 000055 2283 GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDV-----SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS 2357 (2548)
Q Consensus 2283 G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V-----~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k 2357 (2548)
..++++.+.|.-|++||.-+|+.... .....|...+ .+|+|||..|++| ..+.|+++|+..+...
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraS------y~~ydh~de~taAhsL~Fs~DGeqlfaG----ykrcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRAS------YRAYDHQDEYTAAHSLQFSPDGEQLFAG----YKRCIRVFDTSRPGRD 192 (406)
T ss_pred cceeeeccccCceeeeeccccccccc------hhhhhhHHhhhhheeEEecCCCCeEeec----ccceEEEeeccCCCCC
Confidence 78999999999999999998863211 0112233333 2599999999987 6899999999543222
Q ss_pred c-ceeee-----ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000055 2358 S-RASIT-----CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2358 ~-v~sl~-----gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
+ +.... +..+-+.+++|+|.+ ...++.|+....+-|+. -..++.+..+
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~~------~~~~a~gsY~q~~giy~---~~~~~pl~ll----------------- 246 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPMD------SKTLAVGSYGQRVGIYN---DDGRRPLQLL----------------- 246 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCCC------CcceeeecccceeeeEe---cCCCCceeee-----------------
Confidence 2 32222 336788999999996 67899999888888877 3334444444
Q ss_pred CCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCC-CcEEEEecccccccccccCcccCC
Q 000055 2432 QTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK-DGDVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGF 2509 (2548)
Q Consensus 2432 pdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH 2509 (2548)
-+|.+.|+-+.|.++|+.|++|+. |-.|-.||++. +.++..+ .+|
T Consensus 247 -------------------ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L--------------~rh 293 (406)
T KOG2919|consen 247 -------------------GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL--------------ERH 293 (406)
T ss_pred -------------------cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh--------------hhh
Confidence 689999999999999999999986 77999999985 5556554 344
Q ss_pred CCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000055 2510 GGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2510 ~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
.+..+..| -....|+| |++|+.||.|++||+++
T Consensus 294 v~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 294 VGDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ccCccceE-EEecCCCCceeeccCCCccEEEEecCC
Confidence 43222322 22556777 88999999999999986
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.51 E-value=4.8e-13 Score=167.19 Aligned_cols=255 Identities=16% Similarity=0.220 Sum_probs=170.7
Q ss_pred ccCCCCccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEE
Q 000055 2210 YVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFAS 2288 (2548)
Q Consensus 2210 ~v~p~~tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaS 2288 (2548)
+..+..|...| ..+.|-|....|++++.|.++++||+.+++.+..- -..+|.+.|.+++|.+ +...|++
T Consensus 93 lk~~~aH~nAi--fDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~--------~~~GH~~SvkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 93 LKKPLAHKNAI--FDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR--------LNLGHTGSVKSECFMPTNPAVFCT 162 (720)
T ss_pred hccccccccee--EeeccCCCceeEEEccCCceeeeeeeccceeecce--------eecccccccchhhhccCCCcceee
Confidence 45566666666 88888896678889999999999999988766541 1234779999999999 5678999
Q ss_pred EeCCCcEEEEEcCCCcccc-------------c--ccCcc----ceeccCCcccEE----E-EcCCCCEEEEEeccCCCC
Q 000055 2289 AALDGTVCTWQLEVGGRSN-------------V--RPMES----CLCFSSHAMDVS----Y-ITSSGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2289 GS~DGtVrVWDl~tgk~i~-------------i--~p~~s----~~t~~gH~~~V~----a-fSpdGslLATgG~SS~DG 2344 (2548)
|+.||.|.|||++...... . .+... ......+...|. . +..|...||++|. .|+
T Consensus 163 GgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga--~D~ 240 (720)
T KOG0321|consen 163 GGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA--ADS 240 (720)
T ss_pred ccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC--CCc
Confidence 9999999999987442100 0 00000 001122333332 1 4568899999983 599
Q ss_pred eEEEEECCCCC----CCcc--eeeecc---CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeec
Q 000055 2345 NVVVWDTLAPP----TSSR--ASITCH---EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKH 2415 (2548)
Q Consensus 2345 tVrIWDl~t~~----~k~v--~sl~gH---s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~ 2415 (2548)
.|++||++.+. +++. ..+..| .-++.++..... |++|...+.|++|++||++.....- +..+.
T Consensus 241 ~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss-------Gt~L~AsCtD~sIy~ynm~s~s~sP-~~~~s 312 (720)
T KOG0321|consen 241 TIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS-------GTYLFASCTDNSIYFYNMRSLSISP-VAEFS 312 (720)
T ss_pred ceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC-------CCeEEEEecCCcEEEEeccccCcCc-hhhcc
Confidence 99999998531 1122 223233 335666665554 6777777779999999986432221 11110
Q ss_pred CCCCCCCccccccccCCCCCC--ccCCCCCceEEEc---------ccCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEEC
Q 000055 2416 SDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI---------PKAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDA 2483 (2548)
Q Consensus 2416 ~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi---------~~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl 2483 (2548)
+.........-..+|++.+ .++.+...++|.+ +.||...|++++|.|.. .-++|+++|.+++||++
T Consensus 313 --g~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 313 --GKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred --CcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 0011111222346788887 7788889999984 46899999999999843 44667799999999999
Q ss_pred CCC
Q 000055 2484 KAA 2486 (2548)
Q Consensus 2484 ~Tg 2486 (2548)
..+
T Consensus 391 ~~~ 393 (720)
T KOG0321|consen 391 SNG 393 (720)
T ss_pred cCc
Confidence 654
No 148
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1e-12 Score=153.65 Aligned_cols=208 Identities=14% Similarity=0.215 Sum_probs=142.0
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEE
Q 000055 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVr 2347 (2548)
.+|.+.|++++|+.||++|+|++.|++|++|+++.-....-+.... ..-.+|...| .|.||.+-++.... ...+++
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V-~FapDc~s~vv~~~--~g~~l~ 158 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRV-VFAPDCKSVVVSVK--RGNKLC 158 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEE-EECCCcceEEEEEc--cCCEEE
Confidence 4577999999999999999999999999999997532111000000 0122355444 48889876666542 577899
Q ss_pred EEECCCC-CCC-cce--------eeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCC
Q 000055 2348 VWDTLAP-PTS-SRA--------SITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSD 2417 (2548)
Q Consensus 2348 IWDl~t~-~~k-~v~--------sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~ 2417 (2548)
+|.+... ++. ... .-+.|.-.+..+-.... +.+|++++.|..|.+||++ |+.+.++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-------~k~imsas~dt~i~lw~lk----Gq~L~~i--- 224 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-------AKYIMSASLDTKICLWDLK----GQLLQSI--- 224 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-------ceEEEEecCCCcEEEEecC----Cceeeee---
Confidence 9986421 111 111 11134444444443333 7899999999999999954 6777776
Q ss_pred CCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC---CCcE---EEE
Q 000055 2418 RGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK---AAQL---VYH 2491 (2548)
Q Consensus 2418 ~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~---Tgel---l~t 2491 (2548)
......-+..+.+|+|+++++++.--.|+||.+- .|+. .+.
T Consensus 225 ---------------------------------dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rv 271 (420)
T KOG2096|consen 225 ---------------------------------DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRV 271 (420)
T ss_pred ---------------------------------ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhh
Confidence 1122233456789999999999999999999863 2221 111
Q ss_pred ecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECC
Q 000055 2492 WSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2492 L~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
| .++||. ++|...+|+++. ++|.|.||++|+||.+
T Consensus 272 f------------~LkGH~----saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 272 F------------SLKGHQ----SAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred h------------eeccch----hheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 1 368997 556777999998 9999999999999985
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=3.6e-12 Score=160.91 Aligned_cols=246 Identities=17% Similarity=0.220 Sum_probs=179.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+++++|+.+.+.||.+-.||+|-||++..+-..... +.++ ....|.+++|. ++.+|++.+.+|+|.-||+.
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v--i~g~------~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV--IHGP------EDRSIESLAWA-EGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEE--EecC------CCCceeeEEEc-cCCeEEeecCCceEEEEecc
Confidence 799999999999999999999999999875443322 1111 23789999999 56668999999999999999
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+++.. ..+....+.|+ +.+|.+..++.|+ +||.+..++.....-+....+...++.|.++.|+|+
T Consensus 99 ~lk~~--------~~~d~~gg~IWsiai~p~~~~l~Igc---ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~-- 165 (691)
T KOG2048|consen 99 TLKQK--------YNIDSNGGAIWSIAINPENTILAIGC---DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT-- 165 (691)
T ss_pred cCcee--------EEecCCCcceeEEEeCCccceEEeec---CCceEEEEecCCceEEEEeecccccceEEEEEecCC--
Confidence 87532 22445556666 4788889999986 899777777654211123344455789999999999
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000055 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
+..+++|+.||.|++|| ..++..+...... +-...++...-|++
T Consensus 166 -----~~~i~~Gs~Dg~Iriwd---~~~~~t~~~~~~~----------------------------~d~l~k~~~~iVWS 209 (691)
T KOG2048|consen 166 -----GTKIAGGSIDGVIRIWD---VKSGQTLHIITMQ----------------------------LDRLSKREPTIVWS 209 (691)
T ss_pred -----ccEEEecccCceEEEEE---cCCCceEEEeeec----------------------------ccccccCCceEEEE
Confidence 66799999999999999 4555554421000 00000223345677
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEE
Q 000055 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVK 2537 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIr 2537 (2548)
|.|-. ...+++|..-|+|++||...|.+++.+ +.|... |.+++..+++ ++++|.|+.|.
T Consensus 210 v~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~--------------~~h~ad----Vl~Lav~~~~d~vfsaGvd~~ii 270 (691)
T KOG2048|consen 210 VLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSH--------------SCHDAD----VLALAVADNEDRVFSAGVDPKII 270 (691)
T ss_pred EEEee-cCcEEEecCCceEEEEcccCcchhhhh--------------hhhhcc----eeEEEEcCCCCeEEEccCCCceE
Confidence 87774 457889999999999999999988755 455543 5667888886 99999999999
Q ss_pred EEECCCC
Q 000055 2538 LIQLEDY 2544 (2548)
Q Consensus 2538 IWDL~sg 2544 (2548)
-+...++
T Consensus 271 ~~~~~~~ 277 (691)
T KOG2048|consen 271 QYSLTTN 277 (691)
T ss_pred EEEecCC
Confidence 9888765
No 150
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.47 E-value=2.7e-12 Score=161.78 Aligned_cols=300 Identities=15% Similarity=0.167 Sum_probs=190.7
Q ss_pred CCccCCeE--EEEEEEcCCCC---EEEEEECCCeEEEEEcCCCceeE---------------------EEe--ccCCCCC
Q 000055 2214 PATVENIS--TRAFSSHPLRP---FFLVGSSNTHIYLWEFGKDKATA---------------------TYG--VLPAANV 2265 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~---~LASGS~DGsVrLWDl~tg~~l~---------------------t~~--~l~ghs~ 2265 (2548)
...++||. |+.++|...+. +||++|+|..||||.+.-+.... .+. .- -+ .
T Consensus 184 v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is-~e-a 261 (764)
T KOG1063|consen 184 VAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS-FE-A 261 (764)
T ss_pred EEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe-hh-h
Confidence 34566666 78888876444 78899999999999975322000 000 00 00 0
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCC
Q 000055 2266 PPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNG 2343 (2548)
Q Consensus 2266 ~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~D 2343 (2548)
-..+|.+.|.++.|+|.+..|++++.|.++.+|.-....-+-.... ..-...+....... |+|+++.+++-| ..
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v-RlGe~gg~a~GF~g~lw~~n~~~ii~~g---~~ 337 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV-RLGEVGGSAGGFWGGLWSPNSNVIIAHG---RT 337 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEE-EeecccccccceeeEEEcCCCCEEEEec---cc
Confidence 1347889999999999999999999999999998764421110000 00012233334442 899999888876 78
Q ss_pred CeEEEEECCCC-CCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc------------------
Q 000055 2344 INVVVWDTLAP-PTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY------------------ 2404 (2548)
Q Consensus 2344 GtVrIWDl~t~-~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~------------------ 2404 (2548)
|..++|....+ .......+.||.++|+.|.|.|. |.+|++.|.|.+-|+|---.
T Consensus 338 Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~ps-------GeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl 410 (764)
T KOG1063|consen 338 GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPS-------GEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDL 410 (764)
T ss_pred CcEEEEeccCccceeeccccccccccceeeeecCC-------CCEEEEeccccceeeecccccccceeeecccccccccc
Confidence 99999994321 11234567799999999999999 78999999999999986310
Q ss_pred -----cc---------cCceeeeecCCCC--CCCc-----cccccccCCCCCC---ccCC--------CCCc--------
Q 000055 2405 -----IA---------TGKTKKHKHSDRG--GSSI-----NTCAHADAQTGSG---SKPG--------DQNG-------- 2444 (2548)
Q Consensus 2405 -----l~---------TGk~l~tl~~~~~--~s~~-----~~~~vafSpdGk~---v~s~--------D~sv-------- 2444 (2548)
+. ..+.++.+..+.. .... ........|+|.. .+-+ ..++
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 00 0001111100000 0000 0000001112111 0000 0011
Q ss_pred ----------------------eEEE---cccCCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCcEEEEecc
Q 000055 2445 ----------------------MLWY---IPKAHLGSVTRISTVPNTSLFLTGSKDG-----DVKLWDAKAAQLVYHWSK 2494 (2548)
Q Consensus 2445 ----------------------~Iwd---i~~gH~~~VtsLafSPdG~~LaSGS~DG-----tIrIWDl~Tgell~tL~~ 2494 (2548)
.+|. -+-||...|++++.+|+|+++||++... .|++|+..+-..++.+
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L-- 568 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL-- 568 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee--
Confidence 1111 0238999999999999999999998743 6899999877666655
Q ss_pred cccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000055 2495 LHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2495 ~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
.+|+ -.|+.++||||| |++.|.|.++.+|....+
T Consensus 569 ------------~~Hs----LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~ 604 (764)
T KOG1063|consen 569 ------------EGHS----LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQED 604 (764)
T ss_pred ------------cccc----eEEEEEEECCCCcEEEEeecCceEEeeeeecc
Confidence 6776 457999999999 899999999999998654
No 151
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.47 E-value=3.2e-13 Score=164.01 Aligned_cols=238 Identities=13% Similarity=0.246 Sum_probs=159.7
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCC
Q 000055 2267 PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2267 ~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DG 2344 (2548)
.-.|.+.|.++..+...+.++||+. |.|+|||+.... ...|....-|++. .+.+. -+.|||+.+++|| .-.
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg--~k~PvsqLdcl~r-dnyiRSckL~pdgrtLivGG---eas 487 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG--NKSPVSQLDCLNR-DNYIRSCKLLPDGRTLIVGG---EAS 487 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCC--CCCccccccccCc-ccceeeeEecCCCceEEecc---ccc
Confidence 3457788889999988999999875 899999997543 2233333334432 23333 3889999999998 678
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000055 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
++.|||+..+.......+..-.-.+..++.+|+ .++..++..||.|.|||++ ....++.+.. ....
T Consensus 488 tlsiWDLAapTprikaeltssapaCyALa~spD-------akvcFsccsdGnI~vwDLh---nq~~VrqfqG----htDG 553 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPD-------AKVCFSCCSDGNIAVWDLH---NQTLVRQFQG----HTDG 553 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcchhhhhhhcCCc-------cceeeeeccCCcEEEEEcc---cceeeecccC----CCCC
Confidence 999999987655555555555567788999998 7899999999999999965 3445555511 1112
Q ss_pred ccccccCCCCCC--ccCCCCCceEEEcccC-----CC--CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc
Q 000055 2425 TCAHADAQTGSG--SKPGDQNGMLWYIPKA-----HL--GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKL 2495 (2548)
Q Consensus 2425 ~~~vafSpdGk~--v~s~D~sv~Iwdi~~g-----H~--~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~ 2495 (2548)
..++.+++||.. .++-|++++.||..++ |+ +.|.++..+|++.+|+.|-+.+.+.|-.....+.- .
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky-q---- 628 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY-Q---- 628 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccce-e----
Confidence 234455555543 5555666666665332 33 24666666666666666666665555444322111 1
Q ss_pred ccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000055 2496 HERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
+.-|. +.|.++.|.+.| +++.|.|..+..|+.+-|
T Consensus 629 ----------lhlhe----ScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 629 ----------LHLHE----SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred ----------ecccc----cEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 23455 446788999999 999999999999998765
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.47 E-value=9.4e-13 Score=160.08 Aligned_cols=258 Identities=14% Similarity=0.146 Sum_probs=182.2
Q ss_pred ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEEcCCCcccccccCcccee
Q 000055 2238 SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH-RFASAALDGTVCTWQLEVGGRSNVRPMESCLC 2316 (2548)
Q Consensus 2238 S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~-~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t 2316 (2548)
+....++|||+...+...+|-.+. + ...+.++.|+.... .+++.+.|..+++|.-... . ...| ....
T Consensus 9 S~gd~~kl~D~s~~~~~~~~~~~t----~----~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~-~~Vp--~~~k 76 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETKSEYVHQT----A----EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-T-PEVP--RVRK 76 (673)
T ss_pred ccCCceEEeecccccCccccccCC----C----CCcceeeeccccceEEEeecCCceeEEEecccCC-C-Cccc--eeec
Confidence 333469999998766555543211 1 13499999987664 2334467789999976422 1 1011 0111
Q ss_pred ccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCc
Q 000055 2317 FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGD 2396 (2548)
Q Consensus 2317 ~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGt 2396 (2548)
..+....+.+......++++|| ..+.|+|||++. ..+.+.+++|.+.|+++.|+.. ..+|++++..|.
T Consensus 77 ~~gd~~~Cv~~~s~S~y~~sgG---~~~~Vkiwdl~~--kl~hr~lkdh~stvt~v~YN~~-------DeyiAsvs~gGd 144 (673)
T KOG4378|consen 77 LTGDNAFCVACASQSLYEISGG---QSGCVKIWDLRA--KLIHRFLKDHQSTVTYVDYNNT-------DEYIASVSDGGD 144 (673)
T ss_pred cccchHHHHhhhhcceeeeccC---cCceeeehhhHH--HHHhhhccCCcceeEEEEecCC-------cceeEEeccCCc
Confidence 2222222222223457888888 789999999985 5567888999999999999887 469999999999
Q ss_pred EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC---ccCCCCCceEEEcc---------cCCCCCEEEEEEeC
Q 000055 2397 VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG---SKPGDQNGMLWYIP---------KAHLGSVTRISTVP 2464 (2548)
Q Consensus 2397 VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~---v~s~D~sv~Iwdi~---------~gH~~~VtsLafSP 2464 (2548)
|.|.. +.++.....+..+ .......+.+++..+. +++.++.+.+||+. +.|..+...|+|+|
T Consensus 145 iiih~---~~t~~~tt~f~~~---sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsp 218 (673)
T KOG4378|consen 145 IIIHG---TKTKQKTTTFTID---SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSP 218 (673)
T ss_pred EEEEe---cccCccccceecC---CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecC
Confidence 99999 5555544444211 1222356678887776 77888999999963 47999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEEC
Q 000055 2465 -NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2465 -dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
+..+|++.|.|..|.+||.++.+...++. .. ...+.++|+++| |+.|...|.|..||+
T Consensus 219 sne~l~vsVG~Dkki~~yD~~s~~s~~~l~---y~----------------~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 219 SNEALLVSVGYDKKINIYDIRSQASTDRLT---YS----------------HPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred CccceEEEecccceEEEeecccccccceee---ec----------------CCcceeeecCCceEEEeecCCceEEEEec
Confidence 56788999999999999999877766552 11 234667999999 889999999999999
Q ss_pred CCC
Q 000055 2542 EDY 2544 (2548)
Q Consensus 2542 ~sg 2544 (2548)
...
T Consensus 280 R~~ 282 (673)
T KOG4378|consen 280 RST 282 (673)
T ss_pred ccC
Confidence 764
No 153
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.2e-12 Score=154.99 Aligned_cols=299 Identities=15% Similarity=0.153 Sum_probs=193.8
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCcee---EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000055 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKAT---ATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l---~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
.+.+|+ |.++.|+.++++|++|+.|..+++|+++..-.. +.+.. ....|...|.|++|+...+++++|+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~------~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV------MEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee------ccCccccceEEEEEccCCeeEecCC
Confidence 344444 789999999999999999999999998742111 11211 2233778999999999999999999
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCc-ceeeeccCC
Q 000055 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS-RASITCHEG 2367 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~-v~sl~gHs~ 2367 (2548)
.+|+|..-|+++.+.+.+. ......++|.- .+|..+.+++.. .++.|.+||.+..+... .........
T Consensus 125 ~~~~VI~HDiEt~qsi~V~------~~~~~~~~VY~m~~~P~DN~~~~~t---~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVA------NENNNRGDVYHMDQHPTDNTLIVVT---RAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred CcceeEeeecccceeeeee------cccCcccceeecccCCCCceEEEEe---cCceEEEEeccCCCCCCceeeecCCCc
Confidence 9999999999987644321 12222346663 678788888874 89999999998642111 222223445
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCC-CCCccccccccCCCCCC-ccCCCCCc-
Q 000055 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRG-GSSINTCAHADAQTGSG-SKPGDQNG- 2444 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~-~s~~~~~~vafSpdGk~-v~s~D~sv- 2444 (2548)
...++.|+|.. ..+|++.+..|-+.+||+|+.+.. .++.-..... ..........|+|+|.. .+...+..
T Consensus 196 ~F~t~~F~P~~------P~Li~~~~~~~G~~~~D~R~~~~~-~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P 268 (609)
T KOG4227|consen 196 NFYTAEFHPET------PALILVNSETGGPNVFDRRMQARP-VYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP 268 (609)
T ss_pred cceeeeecCCC------ceeEEeccccCCCCceeeccccch-HHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC
Confidence 67889999985 779999999999999999853221 1111001111 11223456678888876 33333333
Q ss_pred eEEEcc--------cCCC-------CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecc-ccc-----ccccc-
Q 000055 2445 MLWYIP--------KAHL-------GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSK-LHE-----RHTFL- 2502 (2548)
Q Consensus 2445 ~Iwdi~--------~gH~-------~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~-~Hs-----~hsfl- 2502 (2548)
.++|+. ..|. ..+.+++|.-+- .++||+.+-.|++|.+....--.-|.. .|. ...|+
T Consensus 269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~ 347 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE 347 (609)
T ss_pred EEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheec
Confidence 233321 1232 246677776554 489999999999999863211111100 000 00011
Q ss_pred --cCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEEC
Q 000055 2503 --QPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2503 --~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
.-.++||... +.++.|+|.. |++.|..+.+|+|.-
T Consensus 348 ~~~~VLrGHRSv----~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 348 KELTVLRGHRSV----PNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ceeEEEeccccc----ccceeecCCcceEeccchhhheecccc
Confidence 1137899854 4667999998 778899999999974
No 154
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=4.6e-12 Score=144.11 Aligned_cols=253 Identities=15% Similarity=0.176 Sum_probs=168.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+-+++|.+++|++|..+|.|.+..+..-..-.....-...-+++..|.++|+.++|. ..+|++|+ ||.|+-|.++
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence 34556779999999999999999998864211000000000001345678999999998 45566665 5999999986
Q ss_pred CCcc-cccccCccceeccCCc-----ccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000055 2302 VGGR-SNVRPMESCLCFSSHA-----MDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2302 tgk~-i~i~p~~s~~t~~gH~-----~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
...+ ...++....+ .+-|. ..|. .+.|..+-++++| .|+.++-||+++ ++..+.+++|++.|.++.
T Consensus 90 E~~es~~~K~lwe~~-~P~~~~~~evPeINam~ldP~enSi~~Ag---GD~~~y~~dlE~--G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 90 EEEESLATKRLWEVK-IPMQVDAVEVPEINAMWLDPSENSILFAG---GDGVIYQVDLED--GRIQREYRGHTDYVHSVV 163 (325)
T ss_pred hhhhhccchhhhhhc-CccccCcccCCccceeEeccCCCcEEEec---CCeEEEEEEecC--CEEEEEEcCCcceeeeee
Confidence 5432 1111111111 11122 2333 3677666555555 699999999987 788899999999999998
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000055 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
--.. ...+.+|+.||++|+|| .+++++++.+....... ....|
T Consensus 164 ~R~~-------~~qilsG~EDGtvRvWd---~kt~k~v~~ie~yk~~~---------------------------~lRp~ 206 (325)
T KOG0649|consen 164 GRNA-------NGQILSGAEDGTVRVWD---TKTQKHVSMIEPYKNPN---------------------------LLRPD 206 (325)
T ss_pred eccc-------CcceeecCCCccEEEEe---ccccceeEEeccccChh---------------------------hcCcc
Confidence 6444 45899999999999999 66788887762111100 01223
Q ss_pred -CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEEC
Q 000055 2454 -LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGG 2532 (2548)
Q Consensus 2454 -~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~ 2532 (2548)
..+|.+++. +..++++|+. -.+.+|++++.++..+|+ +++ .|..+.|..+-++++|.
T Consensus 207 ~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfp------------ipa-------~v~~v~F~~d~vl~~G~ 264 (325)
T KOG0649|consen 207 WGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFP------------IPA-------RVHLVDFVDDCVLIGGE 264 (325)
T ss_pred cCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEe------------ccc-------ceeEeeeecceEEEecc
Confidence 346777776 5678888764 478999999999988884 233 35556777777777777
Q ss_pred CCcEEEEECC
Q 000055 2533 DGSVKLIQLE 2542 (2548)
Q Consensus 2533 DGtIrIWDL~ 2542 (2548)
.+.|.-|.+.
T Consensus 265 g~~v~~~~l~ 274 (325)
T KOG0649|consen 265 GNHVQSYTLN 274 (325)
T ss_pred ccceeeeeec
Confidence 7777777764
No 155
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.46 E-value=4.6e-12 Score=154.89 Aligned_cols=284 Identities=14% Similarity=0.195 Sum_probs=170.6
Q ss_pred EEEEEEcC--CCCEEEEE--ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000055 2222 TRAFSSHP--LRPFFLVG--SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSP--dG~~LASG--S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrV 2297 (2548)
|.|++|++ .|.+++.- +.+..+.+||+..+......+.. .+.|....|+|.+..++.....|.+.+
T Consensus 157 V~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~s----------ne~v~~a~FHPtd~nliit~Gk~H~~F 226 (626)
T KOG2106|consen 157 VTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTS----------NEVVFLATFHPTDPNLIITCGKGHLYF 226 (626)
T ss_pred ceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceec----------cceEEEEEeccCCCcEEEEeCCceEEE
Confidence 58888887 35555543 56677999999987766555432 278999999997666666666799999
Q ss_pred EEcCCCcccccccCccceeccCCcc-cEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000055 2298 WQLEVGGRSNVRPMESCLCFSSHAM-DVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~-~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
|+.+.+...+.. ..+.++.. -|. +|.++|..+ ||. .+|+|.||+... .+..+....|.++|.+++.
T Consensus 227 w~~~~~~l~k~~-----~~fek~ekk~Vl~v~F~engdvi-TgD---S~G~i~Iw~~~~--~~~~k~~~aH~ggv~~L~~ 295 (626)
T KOG2106|consen 227 WTLRGGSLVKRQ-----GIFEKREKKFVLCVTFLENGDVI-TGD---SGGNILIWSKGT--NRISKQVHAHDGGVFSLCM 295 (626)
T ss_pred EEccCCceEEEe-----eccccccceEEEEEEEcCCCCEE-eec---CCceEEEEeCCC--ceEEeEeeecCCceEEEEE
Confidence 999887543211 12444433 333 488888754 554 799999999965 4444455599999999998
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCce---EEE---
Q 000055 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGM---LWY--- 2448 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~---Iwd--- 2448 (2548)
..+. .|++|+.|+.|..||-. ..+-+.+.. +.... ....++-...+-+++...+.+- +-+
T Consensus 296 lr~G--------tllSGgKDRki~~Wd~~-y~k~r~~el---Pe~~G--~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 296 LRDG--------TLLSGGKDRKIILWDDN-YRKLRETEL---PEQFG--PIRTVAEGKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred ecCc--------cEeecCccceEEecccc-ccccccccC---chhcC--CeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence 8873 66779999999999932 111111111 10000 0011111111111333222221 100
Q ss_pred -cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecc--------cc----------cccccccC-----
Q 000055 2449 -IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSK--------LH----------ERHTFLQP----- 2504 (2548)
Q Consensus 2449 -i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~--------~H----------s~hsfl~~----- 2504 (2548)
+..+|....+.++.+|+...++|++.|+.+++|+ ..+++.+..- .| +++-|+..
T Consensus 362 ~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccce
Confidence 1245666667777777777777777777777776 3333332210 11 11111000
Q ss_pred cccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000055 2505 SSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2505 tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
...-|.. .+.++.++|+|+| ||.|+.|+.|++|.++.+
T Consensus 440 lv~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 440 LVTIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred eEEEEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 0111222 2456788999999 999999999999999865
No 156
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.45 E-value=4.2e-12 Score=153.10 Aligned_cols=287 Identities=13% Similarity=0.120 Sum_probs=195.2
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCce------eEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc
Q 000055 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKA------TATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~------l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt 2294 (2548)
+..+.|++++. .++||+.|..|+||.+..+.. +.-... ...|...|++|+|+|+|..+++|+.+|.
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~-------Ls~H~~aVN~vRf~p~gelLASg~D~g~ 88 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSS-------LSRHTRAVNVVRFSPDGELLASGGDGGE 88 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeec-------ccCCcceeEEEEEcCCcCeeeecCCCce
Confidence 67888888776 999999999999999875432 222222 3346799999999999999999999999
Q ss_pred EEEEEcCCCc------cc--ccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec
Q 000055 2295 VCTWQLEVGG------RS--NVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC 2364 (2548)
Q Consensus 2295 VrVWDl~tgk------~i--~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g 2364 (2548)
|.+|....-. +. ........+...+|..++. +|++++++++++. -|+.+++||+.. +.....+..
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s---~dns~~l~Dv~~--G~l~~~~~d 163 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS---VDNSVRLWDVHA--GQLLAILDD 163 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee---ccceEEEEEecc--ceeEeeccc
Confidence 9999876210 00 0000112344677888887 5999999999985 899999999987 778888889
Q ss_pred cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee------c----------CCCCCCCcccccc
Q 000055 2365 HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK------H----------SDRGGSSINTCAH 2428 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl------~----------~~~~~s~~~~~~v 2428 (2548)
|...+..++|.|- ++++++-+.|...+.+++.......++... . ..+..-.......
T Consensus 164 h~~yvqgvawDpl-------~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 164 HEHYVQGVAWDPL-------NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred cccccceeecchh-------hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 9999999999998 678888888887777775321111111100 0 0111112333456
Q ss_pred ccCCCCCCccCCCCCc-----------eEEE---------cccCCCCCEEEEEEeC------------------CCCEEE
Q 000055 2429 ADAQTGSGSKPGDQNG-----------MLWY---------IPKAHLGSVTRISTVP------------------NTSLFL 2470 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv-----------~Iwd---------i~~gH~~~VtsLafSP------------------dG~~La 2470 (2548)
.|+|+|..+....+.. +++. ...+-..++..+.|+| .+-.++
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 7889988743333221 2221 0112334555666665 122345
Q ss_pred EEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000055 2471 TGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2471 SGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.++ ...|.|||.++-.++....+.| .+.+++++|+++| ++..|.||-..+-.++...
T Consensus 317 iAt-~~svyvydtq~~~P~~~v~nih-----------------y~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 317 IAT-KNSVYVYDTQTLEPLAVVDNIH-----------------YSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred Eee-cceEEEeccccccceEEEeeee-----------------eeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 554 4589999999888887663222 2568999999999 8888999988777766543
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.44 E-value=1.2e-12 Score=154.07 Aligned_cols=246 Identities=15% Similarity=0.165 Sum_probs=175.6
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcCCCcccccc
Q 000055 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
.+++|+|+.-|.|+|.|+.+++....+.+ |...|..+.|.|+ .+++++|+.|.+|++|++++..++.+.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~g----------hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRG----------HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceec----------cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 67999999999999999999988877754 5689999999996 578999999999999999998876543
Q ss_pred cCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCC-----------------------cce---e
Q 000055 2310 PMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTS-----------------------SRA---S 2361 (2548)
Q Consensus 2310 p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k-----------------------~v~---s 2361 (2548)
- -..+|.+.|.+ |+.+|..|+++| .|..+++|++..+... .+- +
T Consensus 175 G-----G~egHrdeVLSvD~~~~gd~i~ScG---mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 175 G-----GVEGHRDEVLSVDFSLDGDRIASCG---MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred c-----ccccccCcEEEEEEcCCCCeeeccC---CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 2 26789999986 899999999998 8999999998732100 000 1
Q ss_pred eeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCC
Q 000055 2362 ITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGD 2441 (2548)
Q Consensus 2362 l~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D 2441 (2548)
-.-|...|.|+.|.-+ ++++-+-++.|..|-... -++.+... .-.+
T Consensus 247 ~diHrnyVDCvrw~gd---------~ilSkscenaI~~w~pgk--l~e~~~~v-----------------------kp~e 292 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWFGD---------FILSKSCENAIVCWKPGK--LEESIHNV-----------------------KPPE 292 (385)
T ss_pred cccccchHHHHHHHhh---------heeecccCceEEEEecch--hhhhhhcc-----------------------CCCc
Confidence 1247777888887644 999999999999998421 11111110 0011
Q ss_pred CCceEEEcccCCCCCEEE--EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEE
Q 000055 2442 QNGMLWYIPKAHLGSVTR--ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2442 ~sv~Iwdi~~gH~~~Vts--LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
....+...+.-....|+- .+|+|-+++||.|...|.|.+||++..++...-. + -|.. -.+.|.+
T Consensus 293 s~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt------------l-~~s~-~~~tVRQ 358 (385)
T KOG1034|consen 293 SATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTT------------L-THSK-SGSTVRQ 358 (385)
T ss_pred cceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCce------------E-Eecc-ccceeee
Confidence 112222222333334444 4567788999999999999999999876641110 0 0111 1145778
Q ss_pred EEEcCCe--EEEEECCCcEEEEECC
Q 000055 2520 IQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2520 LafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
.+|+.|| |+...+|++|--||.-
T Consensus 359 ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 359 TSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeecccCcEEEEEeCCCcEEEEEee
Confidence 8999999 7788999999999853
No 158
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.1e-11 Score=145.18 Aligned_cols=245 Identities=19% Similarity=0.203 Sum_probs=164.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrVWD 2299 (2548)
+.++.|.+.|+.+|+++.|++|+|||.......-.... ....|.+.|..|.|.+ -|+.+|+++.|++++||.
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts------~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTS------SWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEee------eEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 79999999999999999999999999754322111110 1223669999999965 599999999999999998
Q ss_pred cCCCccccc-ccCccceeccCCcccEE--EEcC--CCCEEEEEeccCCCCeEEEEECCCCC----CCcceeee-------
Q 000055 2300 LEVGGRSNV-RPMESCLCFSSHAMDVS--YITS--SGSVIAAAGHSSNGINVVVWDTLAPP----TSSRASIT------- 2363 (2548)
Q Consensus 2300 l~tgk~i~i-~p~~s~~t~~gH~~~V~--afSp--dGslLATgG~SS~DGtVrIWDl~t~~----~k~v~sl~------- 2363 (2548)
-........ +.-....++......|. .|.| -|-.+|+++ .||.++||+.-.+. ....+.++
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~---aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS---ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec---cCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 632111000 00001122333444554 3555 466788875 89999999975321 12223333
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCC-----CcEEEEeCCccccC-ceeeeecCCCCCCCccccccccCCC-CCC
Q 000055 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKG-----GDVGIHDFRYIATG-KTKKHKHSDRGGSSINTCAHADAQT-GSG 2436 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~D-----GtVrLWDLR~l~TG-k~l~tl~~~~~~s~~~~~~vafSpd-Gk~ 2436 (2548)
.+.....||.|+|.. .-.++|+.|+.+ +.++||... ..+ +..+.-... .....+..+.|.|+ |+.
T Consensus 167 ~~~~~~~CvsWn~sr----~~~p~iAvgs~e~a~~~~~~~Iye~~--e~~rKw~kva~L~--d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSR----MHEPLIAVGSDEDAPHLNKVKIYEYN--ENGRKWLKVAELP--DHTDPIRDISWAPNIGRS 238 (361)
T ss_pred cccCcceEEeecccc----ccCceEEEEcccCCccccceEEEEec--CCcceeeeehhcC--CCCCcceeeeeccccCCc
Confidence 467788999999773 125578888766 588999842 333 222221111 22334566788887 554
Q ss_pred -----ccCCCCCceEEEc----------------------------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 000055 2437 -----SKPGDQNGMLWYI----------------------------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDA 2483 (2548)
Q Consensus 2437 -----v~s~D~sv~Iwdi----------------------------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl 2483 (2548)
+++.|| ++||++ +.+|.+.|+.+.|+-.|..|++.|.||.||+|..
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 555665 888873 2479999999999999999999999999999986
Q ss_pred C
Q 000055 2484 K 2484 (2548)
Q Consensus 2484 ~ 2484 (2548)
.
T Consensus 318 n 318 (361)
T KOG2445|consen 318 N 318 (361)
T ss_pred h
Confidence 5
No 159
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=7.1e-13 Score=164.65 Aligned_cols=243 Identities=16% Similarity=0.252 Sum_probs=170.8
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000055 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
.|.+.|++++|++....|++|+.||++++|++.......-..+....++.+|..+|.| ++.++..+++|| .||+|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg---~Dg~I 368 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG---IDGTI 368 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec---cCcee
Confidence 3668899999999999999999999999999944322222344567789999999986 788999999998 89999
Q ss_pred EEEECCCC--------CCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC
Q 000055 2347 VVWDTLAP--------PTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR 2418 (2548)
Q Consensus 2347 rIWDl~t~--------~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~ 2418 (2548)
+.|++-.. .......+.||.+.|+.+++++. ...|++++.||+|++|+.. .... .++....
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~-------~~~Llscs~DgTvr~w~~~---~~~~-~~f~~~~ 437 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST-------KDRLLSCSSDGTVRLWEPT---EESP-CTFGEPK 437 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeeccc-------ccceeeecCCceEEeeccC---CcCc-cccCCcc
Confidence 99965310 01234577899999999999988 5689999999999999953 2222 2221111
Q ss_pred CCCCccccccccCCCCCC--ccCCCC------------CceEEEcc--c--CCCCCEEEEEEeCCCCEEEEEeCCCcEEE
Q 000055 2419 GGSSINTCAHADAQTGSG--SKPGDQ------------NGMLWYIP--K--AHLGSVTRISTVPNTSLFLTGSKDGDVKL 2480 (2548)
Q Consensus 2419 ~~s~~~~~~vafSpdGk~--v~s~D~------------sv~Iwdi~--~--gH~~~VtsLafSPdG~~LaSGS~DGtIrI 2480 (2548)
... ....+.+....-. +++... ...+.... . .-...+..+.++|.+.+.+++..|+.|++
T Consensus 438 e~g--~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~ 515 (577)
T KOG0642|consen 438 EHG--YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRF 515 (577)
T ss_pred ccC--CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceec
Confidence 111 0111111111100 111110 11111110 0 12246788999999999999999999999
Q ss_pred EECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000055 2481 WDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2481 WDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+|..++++++.. ..|- .+|+++++.|+| |++|+.||.+++|+++...
T Consensus 516 ~dn~~~~~l~s~--------------~a~~----~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 516 FDNKTGKILHSM--------------VAHK----DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ccccccccchhe--------------eecc----ceecceeecCCCceEEeecCCceeehhhccchh
Confidence 999999998755 3343 356888999999 8999999999999997653
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.43 E-value=2.5e-12 Score=156.29 Aligned_cols=207 Identities=17% Similarity=0.212 Sum_probs=150.9
Q ss_pred EEEEEEcCC-CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 000055 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWD 2299 (2548)
+..++|+.. ...||+||.|.+|.+||+.+|++..++. .|.+.|.++.|+| ....|++|+.||+|.+.|
T Consensus 246 vl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~----------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT----------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD 315 (463)
T ss_pred HHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh----------hcCCceeEEEecCCCceEEEeccccceEEeee
Confidence 456666654 4588999999999999999999988863 3569999999999 578899999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000055 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
.+...+... .-.+.+....|. |.+.....+.++ ++||+|+-+|+|.+ ++++.++++|.++|.++++++..
T Consensus 316 ~R~~~~s~~-----~wk~~g~VEkv~-w~~~se~~f~~~--tddG~v~~~D~R~~-~~~vwt~~AHd~~ISgl~~n~~~- 385 (463)
T KOG0270|consen 316 CRDPSNSGK-----EWKFDGEVEKVA-WDPHSENSFFVS--TDDGTVYYFDIRNP-GKPVWTLKAHDDEISGLSVNIQT- 385 (463)
T ss_pred ccCccccCc-----eEEeccceEEEE-ecCCCceeEEEe--cCCceEEeeecCCC-CCceeEEEeccCCcceEEecCCC-
Confidence 985322111 111334444443 555444333333 49999999999975 68999999999999999999874
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000055 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
..+++|++.|+.|++|++.. ..++.+... .-.-+...|
T Consensus 386 -----p~~l~t~s~d~~Vklw~~~~-~~~~~v~~~------------------------------------~~~~~rl~c 423 (463)
T KOG0270|consen 386 -----PGLLSTASTDKVVKLWKFDV-DSPKSVKEH------------------------------------SFKLGRLHC 423 (463)
T ss_pred -----CcceeeccccceEEEEeecC-CCCcccccc------------------------------------cccccceee
Confidence 67999999999999999652 222211110 001122557
Q ss_pred EEEeCCC-CEEEEEeCCCcEEEEECCCCcEEE
Q 000055 2460 ISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2460 LafSPdG-~~LaSGS~DGtIrIWDl~Tgell~ 2490 (2548)
.++.|+- -+++.||..+.++|||+.++..+.
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccCCCcceEEEecCccceEEEeecccChhHH
Confidence 7788865 466778888899999998876653
No 161
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.43 E-value=5.4e-12 Score=146.35 Aligned_cols=226 Identities=17% Similarity=0.209 Sum_probs=159.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCce-eEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA-TATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~-l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrVW 2298 (2548)
+.|+.|+|++..+++-. |..|.+|+++.+.. +..+.. + ....|....++-+|+| +|+.+++. .|+++..|
T Consensus 126 i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s-s----~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 126 INCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS-S----ESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred eeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc-c----ccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence 69999999999998765 88999999998765 333321 1 1223567788999998 68877765 58999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEE--EcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
|+++.++... .-..|...|.. |+|+.+ +|++|| +||.|+|||++.. ..++..+.+|...|++|.|+
T Consensus 199 D~RT~~~~~s-------I~dAHgq~vrdlDfNpnkq~~lvt~g---DdgyvriWD~R~t-k~pv~el~~HsHWvW~VRfn 267 (370)
T KOG1007|consen 199 DLRTMKKNNS-------IEDAHGQRVRDLDFNPNKQHILVTCG---DDGYVRIWDTRKT-KFPVQELPGHSHWVWAVRFN 267 (370)
T ss_pred Eccchhhhcc-------hhhhhcceeeeccCCCCceEEEEEcC---CCccEEEEeccCC-CccccccCCCceEEEEEEec
Confidence 9998764332 24567777764 777755 677777 9999999999974 67899999999999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccc---cccccCCCCCCccCCCCCceEEEcccC
Q 000055 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT---CAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~---~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
|.+ .+++.+||.|..|.+|......+...+..- +........ .....-+|| +...+..
T Consensus 268 ~~h------dqLiLs~~SDs~V~Lsca~svSSE~qi~~~--~dese~e~~dseer~kpL~dg-----------~l~tyde 328 (370)
T KOG1007|consen 268 PEH------DQLILSGGSDSAVNLSCASSVSSEQQIEFE--DDESESEDEDSEERVKPLQDG-----------QLETYDE 328 (370)
T ss_pred Ccc------ceEEEecCCCceeEEEeccccccccccccc--cccccCcchhhHHhccccccc-----------ccccccc
Confidence 997 789999999999999996432222211110 000000000 000001111 1124467
Q ss_pred CCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECC
Q 000055 2453 HLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2453 H~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~ 2484 (2548)
|+..|++++|+. +.-+||+-|.||.+.|=.+.
T Consensus 329 hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 329 HEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 999999999988 45567888999999876654
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.42 E-value=2.2e-12 Score=156.91 Aligned_cols=220 Identities=13% Similarity=0.197 Sum_probs=162.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000055 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.|++......|+++|+..+.|+|||+....+.+.+ ..|...|++|.++-...++|+++..|.|.+..+.+
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~l----------kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t 152 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFL----------KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT 152 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhc----------cCCcceeEEEEecCCcceeEEeccCCcEEEEeccc
Confidence 34443345589999999999999999854443333 34679999999999999999999999999999988
Q ss_pred CcccccccCccceeccCCcccEEEEcCCCCEE-EEEeccCCCCeEEEEECCCCCCCc-ceeeeccCCCeEEEEEccCCCC
Q 000055 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVI-AAAGHSSNGINVVVWDTLAPPTSS-RASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~afSpdGslL-ATgG~SS~DGtVrIWDl~t~~~k~-v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
+...... ..-.+..-+...+++..+.+ .++ +++|.|.+||+.. ..+ .+....|..+...|+|+|.+
T Consensus 153 ~~~tt~f-----~~~sgqsvRll~ys~skr~lL~~a---sd~G~VtlwDv~g--~sp~~~~~~~HsAP~~gicfspsn-- 220 (673)
T KOG4378|consen 153 KQKTTTF-----TIDSGQSVRLLRYSPSKRFLLSIA---SDKGAVTLWDVQG--MSPIFHASEAHSAPCRGICFSPSN-- 220 (673)
T ss_pred Cccccce-----ecCCCCeEEEeecccccceeeEee---ccCCeEEEEeccC--CCcccchhhhccCCcCcceecCCc--
Confidence 7543211 10112222233577776654 455 4999999999975 334 34556899999999999996
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000055 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
..+|++.|.|..|.+||++. .+....+ .-+.+...|
T Consensus 221 ----e~l~vsVG~Dkki~~yD~~s---~~s~~~l-------------------------------------~y~~Plstv 256 (673)
T KOG4378|consen 221 ----EALLVSVGYDKKINIYDIRS---QASTDRL-------------------------------------TYSHPLSTV 256 (673)
T ss_pred ----cceEEEecccceEEEeeccc---cccccee-------------------------------------eecCCccee
Confidence 88999999999999999652 2221111 134578899
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000055 2461 STVPNTSLFLTGSKDGDVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
+|.++|.+|+.|+..|.|..||++. ..++.++ ..|. +.|++++|-|.-
T Consensus 257 af~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~--------------sah~----~sVt~vafq~s~ 305 (673)
T KOG4378|consen 257 AFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR--------------SAHD----ASVTRVAFQPSP 305 (673)
T ss_pred eecCCceEEEeecCCceEEEEecccCCCCceEe--------------eecc----cceeEEEeeecc
Confidence 9999999999999999999999985 5566555 4555 346788887764
No 163
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.41 E-value=1.4e-11 Score=155.48 Aligned_cols=294 Identities=14% Similarity=0.154 Sum_probs=205.3
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCC--ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000055 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD--KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg--~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
.+-||. |.++.|+|.+..|++++.|.++.+|..++. --+...+. | ...+..+.-.+..|+|+++.+++-+.
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRl--G---e~gg~a~GF~g~lw~~n~~~ii~~g~ 336 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRL--G---EVGGSAGGFWGGLWSPNSNVIIAHGR 336 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEe--e---cccccccceeeEEEcCCCCEEEEecc
Confidence 344565 899999999999999999999999998754 33333221 0 01123467899999999999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCC--CcceeeeccCC
Q 000055 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPT--SSRASITCHEG 2367 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~--k~v~sl~gHs~ 2367 (2548)
-|-.++|....... -.......||...|.. |+|.|.+++++| .|.+-+++-.-.... ..+..-+-|..
T Consensus 337 ~Gg~hlWkt~d~~~-----w~~~~~iSGH~~~V~dv~W~psGeflLsvs---~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 337 TGGFHLWKTKDKTF-----WTQEPVISGHVDGVKDVDWDPSGEFLLSVS---LDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred cCcEEEEeccCccc-----eeeccccccccccceeeeecCCCCEEEEec---cccceeeecccccccceeeecccccccc
Confidence 99999998322110 0112237899999974 889999999997 899999987642111 12334456888
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc-------------------cccCceeeee-------c----CC
Q 000055 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY-------------------IATGKTKKHK-------H----SD 2417 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~-------------------l~TGk~l~tl-------~----~~ 2417 (2548)
.++|+++-+. ...+++|...+.+|+|+... +..+..+..+ . ..
T Consensus 409 Dl~c~~~vn~-------~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 409 DLTCLSFVNE-------DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred cceeeehccC-------CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence 9999999884 24899999999999999742 0001111000 0 00
Q ss_pred CC---------------------------------------CCCccccccccCCCCCCccCCCC-------CceEEEc--
Q 000055 2418 RG---------------------------------------GSSINTCAHADAQTGSGSKPGDQ-------NGMLWYI-- 2449 (2548)
Q Consensus 2418 ~~---------------------------------------~s~~~~~~vafSpdGk~v~s~D~-------sv~Iwdi-- 2449 (2548)
+. ........++.+|+|+++++..+ .+++|++
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~ 561 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN 561 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc
Confidence 00 00112233567888887554433 3578874
Q ss_pred ------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE-EEecccccccccccCcccCCCCceeecEEEEEE
Q 000055 2450 ------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV-YHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQV 2522 (2548)
Q Consensus 2450 ------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell-~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLaf 2522 (2548)
..+|.-.|+.++|+|||++|++.|.|.++.+|........ ..| ...+.|... |+++.|
T Consensus 562 W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f-----------a~~k~HtRI----IWdcsW 626 (764)
T KOG1063|consen 562 WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF-----------ACLKAHTRI----IWDCSW 626 (764)
T ss_pred hhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh-----------ccccccceE----EEEccc
Confidence 4689999999999999999999999999999998533221 111 124677644 566699
Q ss_pred cCCe--EEEEECCCcEEEEECCCC
Q 000055 2523 VSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2523 SPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
+|++ ++|+|.|.+|++|...++
T Consensus 627 ~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 627 SPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CcccceeEEecCCceEEEEeccCc
Confidence 9999 999999999999999876
No 164
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.2e-11 Score=160.21 Aligned_cols=209 Identities=16% Similarity=0.244 Sum_probs=165.5
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEE
Q 000055 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrI 2348 (2548)
.|...-+.|+|.|+|.++++++.||.|++|+....... | .++..+...|.++..++..|+++. .+++|..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~---P----~ti~~~g~~v~~ia~~s~~f~~~s---~~~tv~~ 80 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE---P----ETIDISGELVSSIACYSNHFLTGS---EQNTVLR 80 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC---C----chhhccCceeEEEeecccceEEee---ccceEEE
Confidence 46788999999999999999999999999998755211 1 123336677777777788898884 9999999
Q ss_pred EECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000055 2349 WDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
|....+ ..-..+..-+-++++++|+.+ |.+++.||.|-.|++-+ ...+....++
T Consensus 81 y~fps~--~~~~iL~Rftlp~r~~~v~g~-------g~~iaagsdD~~vK~~~---~~D~s~~~~l-------------- 134 (933)
T KOG1274|consen 81 YKFPSG--EEDTILARFTLPIRDLAVSGS-------GKMIAAGSDDTAVKLLN---LDDSSQEKVL-------------- 134 (933)
T ss_pred eeCCCC--CccceeeeeeccceEEEEecC-------CcEEEeecCceeEEEEe---ccccchheee--------------
Confidence 998653 332233344568999999888 88999999999999999 4445555554
Q ss_pred ccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccC
Q 000055 2429 ADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRG 2508 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~G 2508 (2548)
.+|+++|.+|.|+|.+.+||+.+-||.|+|||+.++.+.+++++......+
T Consensus 135 ----------------------rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~------- 185 (933)
T KOG1274|consen 135 ----------------------RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF------- 185 (933)
T ss_pred ----------------------cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc-------
Confidence 889999999999999999999999999999999999999888543333222
Q ss_pred CCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000055 2509 FGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2509 H~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
-. ...+..++|+|+| ++..+.|++|++|+..+..
T Consensus 186 ~~---s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 186 IL---SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred cc---cceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence 11 2346788999997 9999999999999987654
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.37 E-value=2.7e-10 Score=137.74 Aligned_cols=238 Identities=26% Similarity=0.433 Sum_probs=178.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc-eeEEEeccCCCCCCCCCCCCCeEEEEE-ccCCC-EEEEEeC-CCcEEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK-ATATYGVLPAANVPPPYALASISALQF-DHYGH-RFASAAL-DGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~-~l~t~~~l~ghs~~~~~H~~~VtsVaF-SPdG~-~LaSGS~-DGtVrV 2297 (2548)
+.++.+.+.+..++.++.|+.+.+|+...+. ....+.... ...+..+.+ ++++. .++..+. |+.+.+
T Consensus 68 i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 68 ITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH---------DSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred EEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccC---------CCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 6888999999999999999999999999886 555553311 135777777 77777 5555444 999999
Q ss_pred EEcCC-CcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000055 2298 WQLEV-GGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2298 WDl~t-gk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
|+... .. ....+..|...|. .+++++..+++++ ..|+.+++|+... ...+..+.+|...|.+++|
T Consensus 139 ~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~ 206 (466)
T COG2319 139 WDLSTPGK--------LIRTLEGHSESVTSLAFSPDGKLLASGS--SLDGTIKLWDLRT--GKPLSTLAGHTDPVSSLAF 206 (466)
T ss_pred EEecCCCe--------EEEEEecCcccEEEEEECCCCCEEEecC--CCCCceEEEEcCC--CceEEeeccCCCceEEEEE
Confidence 99986 22 1233667777666 5899999888774 1399999999976 5678888889999999999
Q ss_pred ccCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCceee-eecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000055 2375 FDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKTKK-HKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2375 sP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~l~-tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
+|. +. .+++++.|+.|++||.+ .+..+. .+ .+
T Consensus 207 ~~~-------~~~~~~~~~~d~~i~~wd~~---~~~~~~~~~------------------------------------~~ 240 (466)
T COG2319 207 SPD-------GGLLIASGSSDGTIRLWDLS---TGKLLRSTL------------------------------------SG 240 (466)
T ss_pred cCC-------cceEEEEecCCCcEEEEECC---CCcEEeeec------------------------------------CC
Confidence 977 44 55556999999999843 444444 22 55
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcE-EEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEE
Q 000055 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQL-VYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS 2529 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgel-l~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS 2529 (2548)
|...+ -..|+|++.++++++.|+.+++||+..... +..+ .+|.. .|.++.|+|++ +++
T Consensus 241 ~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------------~~~~~----~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 241 HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------------SGHSS----SVLSVAFSPDGKLLAS 301 (466)
T ss_pred CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------------ecCCc----cEEEEEECCCCCEEEE
Confidence 66664 338999999999999999999999987665 3222 34533 35666899966 777
Q ss_pred EECCCcEEEEECCCCc
Q 000055 2530 CGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2530 GS~DGtIrIWDL~sg~ 2545 (2548)
++.|+.+++|++.+..
T Consensus 302 ~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 302 GSSDGTVRLWDLETGK 317 (466)
T ss_pred eeCCCcEEEEEcCCCc
Confidence 9999999999887653
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.35 E-value=3.2e-11 Score=144.74 Aligned_cols=211 Identities=20% Similarity=0.257 Sum_probs=152.8
Q ss_pred CCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCC-CCEEEEEeccC
Q 000055 2266 PPPYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSS-GSVIAAAGHSS 2341 (2548)
Q Consensus 2266 ~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpd-GslLATgG~SS 2341 (2548)
...+|++.|..++|+| +...+|+|+.|.+|.||++-.+.... ...+....+.+|...|- .|+|. .+.++++|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag--- 151 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG--- 151 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-CcccceEEEeecceeEEEEeecccchhhHhhcc---
Confidence 3457889999999999 67889999999999999997654322 23345677899998775 47764 46778876
Q ss_pred CCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC
Q 000055 2342 NGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS 2421 (2548)
Q Consensus 2342 ~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s 2421 (2548)
.|.+|.+|++.+ ++....+. |.+-|.++.|+.+ |.+++|.+.|+.|||||.| +++.+..-
T Consensus 152 ~Dn~v~iWnv~t--geali~l~-hpd~i~S~sfn~d-------Gs~l~TtckDKkvRv~dpr---~~~~v~e~------- 211 (472)
T KOG0303|consen 152 SDNTVSIWNVGT--GEALITLD-HPDMVYSMSFNRD-------GSLLCTTCKDKKVRVIDPR---RGTVVSEG------- 211 (472)
T ss_pred CCceEEEEeccC--CceeeecC-CCCeEEEEEeccC-------CceeeeecccceeEEEcCC---CCcEeeec-------
Confidence 799999999987 56666666 9999999999988 8899999999999999954 45554442
Q ss_pred CccccccccCCCCCCccCCCCCceEEEcccCCCC-CEEEEEEeCCCCEEEEEe---CCCcEEEEECCCCcEEEEeccccc
Q 000055 2422 SINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG-SVTRISTVPNTSLFLTGS---KDGDVKLWDAKAAQLVYHWSKLHE 2497 (2548)
Q Consensus 2422 ~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~-~VtsLafSPdG~~LaSGS---~DGtIrIWDl~Tgell~tL~~~Hs 2497 (2548)
.+|++ .-..+.|-.+|.++.||- .+..+-+||...-+.--.+
T Consensus 212 -----------------------------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~----- 257 (472)
T KOG0303|consen 212 -----------------------------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIAL----- 257 (472)
T ss_pred -----------------------------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCccee-----
Confidence 34554 234556777888666653 3788999997653221111
Q ss_pred ccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCCc
Q 000055 2498 RHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
..+...++.. =--|+||. .++|-+|+.||.|.+.+..
T Consensus 258 ------~elDtSnGvl-----~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 258 ------QELDTSNGVL-----LPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ------EEeccCCceE-----EeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 0123333322 22467776 5688899999999998764
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.34 E-value=1.7e-11 Score=144.09 Aligned_cols=230 Identities=19% Similarity=0.303 Sum_probs=155.5
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc-CCCcccc
Q 000055 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL-EVGGRSN 2307 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl-~tgk~i~ 2307 (2548)
|+..++|+.+.+.-|++||.-+|+....|+....-. ..-...+++|+|||.+|+.| ....|+++|+ +.|..-.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~d-----e~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQD-----EYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCP 194 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHH-----hhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCc
Confidence 778899999999999999999999988886543111 12345689999999988765 5689999999 4443221
Q ss_pred cccCccceeccCCcccEE--EEcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCC
Q 000055 2308 VRPMESCLCFSSHAMDVS--YITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSV 2384 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~--afSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~ 2384 (2548)
..+.. .+.-.+..+.+. +++|... .++.++ ....+-|+.-.. ..++..+-+|.++|+.+.|.++
T Consensus 195 vy~t~-~~~k~gq~giisc~a~sP~~~~~~a~gs---Y~q~~giy~~~~--~~pl~llggh~gGvThL~~~ed------- 261 (406)
T KOG2919|consen 195 VYTTV-TKGKFGQKGIISCFAFSPMDSKTLAVGS---YGQRVGIYNDDG--RRPLQLLGGHGGGVTHLQWCED------- 261 (406)
T ss_pred chhhh-hcccccccceeeeeeccCCCCcceeeec---ccceeeeEecCC--CCceeeecccCCCeeeEEeccC-------
Confidence 11110 000112233333 3777554 777775 556666665543 5678888899999999999999
Q ss_pred CCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC-CEEE--E
Q 000055 2385 SPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG-SVTR--I 2460 (2548)
Q Consensus 2385 g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~-~Vts--L 2460 (2548)
|+.|.+|+ .|..|-.||+|+ .+..+..+ ..|.+ .-.. .
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR~--~~~pv~~L------------------------------------~rhv~~TNQRI~F 303 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIRY--SRDPVYAL------------------------------------ERHVGDTNQRILF 303 (406)
T ss_pred cCeecccccCCCeEEEEeehh--ccchhhhh------------------------------------hhhccCccceEEE
Confidence 67888887 578999999985 12222221 22322 2222 3
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC
Q 000055 2461 STVPNTSLFLTGSKDGDVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD 2533 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D 2533 (2548)
...|++++|++|+.||.|++||+++ |..+..+ ..|...+ ..++++|-- ++|++..
T Consensus 304 Dld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~--------------~~~sd~v----NgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 304 DLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT--------------GNYSDTV----NGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ecCCCCceeeccCCCccEEEEecCCCCCccccc--------------ccccccc----cceecCcccceeeeccCc
Confidence 4568999999999999999999997 6655443 3455433 455888887 5555543
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.34 E-value=6.6e-10 Score=134.42 Aligned_cols=233 Identities=24% Similarity=0.449 Sum_probs=170.7
Q ss_pred cCCCC-EEEEE-ECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CCcEEEEEcCCC
Q 000055 2228 HPLRP-FFLVG-SSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTWQLEVG 2303 (2548)
Q Consensus 2228 SPdG~-~LASG-S~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DGtVrVWDl~tg 2303 (2548)
++++. +++.. ..|+.+.+|+... ......+.. |...|..+.|+|++..+++++. |+.+++|++..+
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG----------HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEec----------CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC
Confidence 78887 55544 4499999999987 555555533 5588999999999998998886 999999999874
Q ss_pred cccccccCccceeccCCcccEEE--EcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcce-eeeccCCCeEEEEEccCCC
Q 000055 2304 GRSNVRPMESCLCFSSHAMDVSY--ITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH~~~V~a--fSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~-sl~gHs~~VtSLafsP~dl 2379 (2548)
... ..+.+|...|.. ++|++. .+++++ .|+.|++||... +.... .+.+|...+ ...|++.
T Consensus 189 ~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~---~d~~i~~wd~~~--~~~~~~~~~~~~~~~-~~~~~~~-- 252 (466)
T COG2319 189 KPL--------STLAGHTDPVSSLAFSPDGGLLIASGS---SDGTIRLWDLST--GKLLRSTLSGHSDSV-VSSFSPD-- 252 (466)
T ss_pred ceE--------EeeccCCCceEEEEEcCCcceEEEEec---CCCcEEEEECCC--CcEEeeecCCCCcce-eEeECCC--
Confidence 322 235567777764 778887 444433 899999998873 55555 688888875 4478887
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000055 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
+..+++++.|+.+++||++.... .+.. . .+|...|.+
T Consensus 253 -----~~~~~~~~~d~~~~~~~~~~~~~--~~~~-----------------------------------~-~~~~~~v~~ 289 (466)
T COG2319 253 -----GSLLASGSSDGTIRLWDLRSSSS--LLRT-----------------------------------L-SGHSSSVLS 289 (466)
T ss_pred -----CCEEEEecCCCcEEEeeecCCCc--EEEE-----------------------------------E-ecCCccEEE
Confidence 56888999999999999653111 1111 1 467889999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE-ECCCcE
Q 000055 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC-GGDGSV 2536 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG-S~DGtI 2536 (2548)
+.|+|++..+++++.|+.+++||..+........ ..+|.. .+..+.+.+++ ++.+ ..|+.+
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------------~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT------------LKGHEG----PVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee------------ecccCC----ceEEEEECCCCCEEEEeecCCCcE
Confidence 9999999999989999999999998887766551 135554 34555674442 5544 688999
Q ss_pred EEEECCCCc
Q 000055 2537 KLIQLEDYQ 2545 (2548)
Q Consensus 2537 rIWDL~sg~ 2545 (2548)
++|++....
T Consensus 354 ~~~~~~~~~ 362 (466)
T COG2319 354 RLWDLRTGK 362 (466)
T ss_pred EeeecCCCc
Confidence 999987653
No 169
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.34 E-value=9.3e-11 Score=145.39 Aligned_cols=117 Identities=14% Similarity=0.198 Sum_probs=84.3
Q ss_pred CeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000055 2219 NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2219 gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
++.+-|+.|||...-++..+..|+++|||+.+++.+..+. +|.+.|.+..|+.||..+++++.|+.|+||
T Consensus 128 ~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~----------~h~d~vQSa~WseDG~llatscKdkqirif 197 (1012)
T KOG1445|consen 128 NVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELS----------GHTDKVQSADWSEDGKLLATSCKDKQIRIF 197 (1012)
T ss_pred ceEEEEeecccCcCceEEeccCceEEEEEcccCceeeccc----------CCchhhhccccccCCceEeeecCCcceEEe
Confidence 3457899999987767777778999999999998776653 366999999999999999999999999999
Q ss_pred EcCCCcccccccCccceeccCCcc----cEEEEcCCCCEEEEEecc-CCCCeEEEEECCC
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAM----DVSYITSSGSVIAAAGHS-SNGINVVVWDTLA 2353 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~----~V~afSpdGslLATgG~S-S~DGtVrIWDl~t 2353 (2548)
|-+... ...+...+|.+ .|.+.... ..|++.|+. -.-+.|++||++.
T Consensus 198 DPRa~~-------~piQ~te~H~~~rdsRv~w~Gn~-~rlisTGF~~~R~reV~~~Dtr~ 249 (1012)
T KOG1445|consen 198 DPRASM-------EPIQTTEGHGGMRDSRVLWAGNW-ERLISTGFTTKRIREVRAYDTRK 249 (1012)
T ss_pred CCccCC-------Cccccccccccchhheeeeccch-hhhhhcccchhhheeeeeeeccc
Confidence 998543 12233456653 33333222 244444421 1335789999875
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.33 E-value=3.1e-11 Score=150.07 Aligned_cols=265 Identities=13% Similarity=0.155 Sum_probs=186.9
Q ss_pred CCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000055 2218 ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2218 ~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrV 2297 (2548)
..|.+..++|-|||..|+.+..| .+.+||.+.|..+.++++ |.+.|.+++|+.||+++++|+.|+.|.+
T Consensus 11 ~~hci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKg----------HKDtVycVAys~dGkrFASG~aDK~VI~ 79 (1081)
T KOG1538|consen 11 AEHCINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKG----------HKDTVYCVAYAKDGKRFASGSADKSVII 79 (1081)
T ss_pred cccchheeEECCCCceEEEecCC-EEEEEeCCCccccccccc----------ccceEEEEEEccCCceeccCCCceeEEE
Confidence 34467889999999988876554 689999999998888754 6699999999999999999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000055 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
|.-.-.+.. -..|.+.|.| |+|-.+.++++. =...-+|.... +.+...+ ....+.+.+|.
T Consensus 80 W~~klEG~L----------kYSH~D~IQCMsFNP~~h~LasCs----LsdFglWS~~q---K~V~K~k-ss~R~~~CsWt 141 (1081)
T KOG1538|consen 80 WTSKLEGIL----------KYSHNDAIQCMSFNPITHQLASCS----LSDFGLWSPEQ---KSVSKHK-SSSRIICCSWT 141 (1081)
T ss_pred eccccccee----------eeccCCeeeEeecCchHHHhhhcc----hhhccccChhh---hhHHhhh-hheeEEEeeec
Confidence 986533211 2357776665 888888999874 34566787653 2332221 24567888888
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-------ccCCCCCceEEE
Q 000055 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-------SKPGDQNGMLWY 2448 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-------v~s~D~sv~Iwd 2448 (2548)
.+ |++++.|-.||+|.+-+ ++|+....+..+++.. ...-.+.++|+... +...+.+...+.
T Consensus 142 nD-------GqylalG~~nGTIsiRN----k~gEek~~I~Rpgg~N-spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~ 209 (1081)
T KOG1538|consen 142 ND-------GQYLALGMFNGTISIRN----KNGEEKVKIERPGGSN-SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQ 209 (1081)
T ss_pred CC-------CcEEEEeccCceEEeec----CCCCcceEEeCCCCCC-CCceEEEecCCCCCCccceEEEEeccceeEEEE
Confidence 88 88999999999999876 3444433332233332 33344566665321 344444444443
Q ss_pred cc-------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEE
Q 000055 2449 IP-------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2449 i~-------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa 2521 (2548)
+. +.-.-.-.|+.+.|+|.++..||.|+.+++|. +.|-.+.++ -... ..|+.++
T Consensus 210 LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTv--------------g~~D----~WIWtV~ 270 (1081)
T KOG1538|consen 210 LSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTV--------------GEQD----SWIWTVQ 270 (1081)
T ss_pred ecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeec--------------cccc----eeEEEEE
Confidence 21 11122345788889999999999999999997 456666655 1122 3467779
Q ss_pred EcCCe--EEEEECCCcEEEEECC
Q 000055 2522 VVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2522 fSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
..|++ ++.|+.||+|-.|++-
T Consensus 271 ~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 271 AKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EccCCceEEEEEccCeeehhhhH
Confidence 99999 8899999999998874
No 171
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.33 E-value=2e-10 Score=140.36 Aligned_cols=249 Identities=12% Similarity=0.112 Sum_probs=168.0
Q ss_pred EEEEEEcCCC-CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000055 2222 TRAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG-~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
|.++.|+|.. ..+.+.+.||+|++-|+.++..-..+..- .-.....++.|+.+...++.|+.=|...+||.
T Consensus 237 Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~--------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~ 308 (498)
T KOG4328|consen 237 VSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD--------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDL 308 (498)
T ss_pred ccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC--------ccceeeeeccccCCCccEEEeecccceEEEEe
Confidence 5788888854 57888999999999999876543333210 01256788899988888888888889999999
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCC-CCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCCeEEEEEc
Q 000055 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSS-GSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd-GslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~VtSLafs 2375 (2548)
++++... ..+.-|...|.. ++|- ..++||++ .|++++|||++.-..+ ++.....|...|.+..|+
T Consensus 309 R~~~s~~-------~~~~lh~kKI~sv~~NP~~p~~laT~s---~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 309 RTDGSEY-------ENLRLHKKKITSVALNPVCPWFLATAS---LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred ecCCccc-------hhhhhhhcccceeecCCCCchheeecc---cCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 9876321 114456666653 6664 45778875 9999999999853233 244555799999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc-cc-CC
Q 000055 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI-PK-AH 2453 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi-~~-gH 2453 (2548)
|.+ +. |+|.+.|..|+|||.. ++.... .| ...|.+- .. .|
T Consensus 379 Ps~------gt-l~TT~~D~~IRv~dss------~~sa~~---------------~p----------~~~I~Hn~~t~Rw 420 (498)
T KOG4328|consen 379 PSG------GT-LLTTCQDNEIRVFDSS------CISAKD---------------EP----------LGTIPHNNRTGRW 420 (498)
T ss_pred CCC------Cc-eEeeccCCceEEeecc------cccccC---------------Cc----------cceeeccCccccc
Confidence 995 55 9999999999999942 111110 00 0011100 01 12
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE-
Q 000055 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC- 2530 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG- 2530 (2548)
. .....+|+|+..++++|-.-..|-|+|-..++.+..+ |.....+...-.+|+|-+ +++|
T Consensus 421 l-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el----------------~~P~~~tI~~vn~~HP~~~~~~aG~ 483 (498)
T KOG4328|consen 421 L-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL----------------HDPESSTIPSVNEFHPMRDTLAAGG 483 (498)
T ss_pred c-cchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec----------------cCccccccccceeecccccceeccC
Confidence 2 2335679999999999999999999999989888766 111111111223799977 5544
Q ss_pred ECCCcEEEEECCC
Q 000055 2531 GGDGSVKLIQLED 2543 (2548)
Q Consensus 2531 S~DGtIrIWDL~s 2543 (2548)
+..|.|.||--+.
T Consensus 484 ~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 484 NSSGKIYVFTNKK 496 (498)
T ss_pred CccceEEEEecCC
Confidence 5567888886443
No 172
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=8e-11 Score=143.70 Aligned_cols=201 Identities=16% Similarity=0.249 Sum_probs=154.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCC-EEEEEeccCCCCeEEEEE
Q 000055 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGS-VIAAAGHSSNGINVVVWD 2350 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGs-lLATgG~SS~DGtVrIWD 2350 (2548)
+.|++|.|+|....+++|+.||++++|.++......+ ...-+.+..-.-.+|.|+|. .++++| .....+.||
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~l----qS~~l~~fPi~~a~f~p~G~~~i~~s~---rrky~ysyD 286 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKL----QSIHLEKFPIQKAEFAPNGHSVIFTSG---RRKYLYSYD 286 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhh----eeeeeccCccceeeecCCCceEEEecc---cceEEEEee
Confidence 7899999999999999999999999999974321111 11112222223345899998 777876 788999999
Q ss_pred CCCCCCCcceeeeccC-CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccc
Q 000055 2351 TLAPPTSSRASITCHE-GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHA 2429 (2548)
Q Consensus 2351 l~t~~~k~v~sl~gHs-~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~va 2429 (2548)
+.+..-..+..+.++. ..+....++++ +++|+..|..|.|.+.. ..+++.+..+
T Consensus 287 le~ak~~k~~~~~g~e~~~~e~FeVShd-------~~fia~~G~~G~I~lLh---akT~eli~s~--------------- 341 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEKSMERFEVSHD-------SNFIAIAGNNGHIHLLH---AKTKELITSF--------------- 341 (514)
T ss_pred ccccccccccCCCCcccchhheeEecCC-------CCeEEEcccCceEEeeh---hhhhhhhhee---------------
Confidence 9875444556666665 46778888888 78999999999999988 5666666554
Q ss_pred cCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCC
Q 000055 2430 DAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGF 2509 (2548)
Q Consensus 2430 fSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH 2509 (2548)
.-.+.|..++|+.+++.|+..+.+|.|.+||++...+++++...
T Consensus 342 ----------------------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-------------- 385 (514)
T KOG2055|consen 342 ----------------------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-------------- 385 (514)
T ss_pred ----------------------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec--------------
Confidence 14568899999999999999999999999999999999888311
Q ss_pred CCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000055 2510 GGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2510 ~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
+.| .-++++.+++| ||+||..|.|.|||..+
T Consensus 386 -G~v--~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 386 -GSV--HGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred -Ccc--ceeeeeecCCCceEEeccCcceEEEeccch
Confidence 111 12566888888 99999999999999764
No 173
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.4e-10 Score=150.67 Aligned_cols=279 Identities=16% Similarity=0.237 Sum_probs=182.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+.|+++||.++++|+|..||.|.+|.--. ...-.++. ....|.+.|.++.|+++|.+|++|+..|.+.+|.+
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t-------~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCT-------LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccce-------EEEecccccceeEEecCCceEeecccceEEEEEee
Confidence 58999999999999999999999997433 11111111 12346689999999999999999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCC-CCcceeeec--------cCCCe
Q 000055 2301 EVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPP-TSSRASITC--------HEGGA 2369 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~-~k~v~sl~g--------Hs~~V 2369 (2548)
+++++. . ++.-...|. .++||+.+.+... .|+.|.+-....-. ...+..+.. ..+-.
T Consensus 281 ~T~~kq-f--------LPRLgs~I~~i~vS~ds~~~sl~~---~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 281 ETGKKQ-F--------LPRLGSPILHIVVSPDSDLYSLVL---EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred cCCCcc-c--------ccccCCeeEEEEEcCCCCeEEEEe---cCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 998632 1 333344454 3899999988886 79999888763210 111222221 24556
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecC-----CCC--CCCccccccccCCCCCCccC---
Q 000055 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHS-----DRG--GSSINTCAHADAQTGSGSKP--- 2439 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~-----~~~--~s~~~~~~vafSpdGk~v~s--- 2439 (2548)
+.++++|. .+.++-.+..|.|.+||+ .+.+.+..+.. ..+ ........++.+..|.+.++
T Consensus 349 t~~~idpr-------~~~~vln~~~g~vQ~ydl---~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~ 418 (792)
T KOG1963|consen 349 TGVSIDPR-------TNSLVLNGHPGHVQFYDL---YTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEA 418 (792)
T ss_pred eeEEEcCC-------CCceeecCCCceEEEEec---cccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeee
Confidence 77888885 457888899999999995 33343333210 111 11122334444555555221
Q ss_pred -------C--CCCceEEE-------------cccCCCCCEEEEEEeCC--CCEEEEEeCCCcEEEEECCCCcEE------
Q 000055 2440 -------G--DQNGMLWY-------------IPKAHLGSVTRISTVPN--TSLFLTGSKDGDVKLWDAKAAQLV------ 2489 (2548)
Q Consensus 2440 -------~--D~sv~Iwd-------------i~~gH~~~VtsLafSPd--G~~LaSGS~DGtIrIWDl~Tgell------ 2489 (2548)
. ...++.|. +...|+..+...++.+. ....+|+|.||.++||-+..-+-+
T Consensus 419 ~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~ 498 (792)
T KOG1963|consen 419 RIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSN 498 (792)
T ss_pred eehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccc
Confidence 1 22346775 23468877766666553 237999999999999998433222
Q ss_pred EEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCC
Q 000055 2490 YHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2490 ~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~s 2543 (2548)
.+.... +. -|. ..++.++|+.|| ++++|.|++|.+||..+
T Consensus 499 W~c~~i---~s-------y~k----~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 499 WTCKAI---GS-------YHK----TPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred eEEeee---ec-------ccc----CcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 211100 00 122 234566899999 99999999999999987
No 174
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.31 E-value=2.2e-10 Score=151.36 Aligned_cols=288 Identities=16% Similarity=0.177 Sum_probs=172.7
Q ss_pred ccccccccCCccccCCCCccCCeE--EEEEEEc-CCCCEEEEEECCCeEEEEEcCCCcee-EEEeccCCCCCCCCCCCCC
Q 000055 2198 ALGWETQDDFEDYVDPPATVENIS--TRAFSSH-PLRPFFLVGSSNTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALAS 2273 (2548)
Q Consensus 2198 ~i~W~~~ed~e~~v~p~~tl~gV~--V~~VsfS-PdG~~LASGS~DGsVrLWDl~tg~~l-~t~~~l~ghs~~~~~H~~~ 2273 (2548)
..+|...... .+++..|. +..++.+ +++.+++|||.||+|++||...-..- .+++.- .+.......
T Consensus 1031 ~~gW~p~G~l------VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~----ltys~~~sr 1100 (1431)
T KOG1240|consen 1031 PPGWNPRGIL------VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSE----LTYSPEGSR 1100 (1431)
T ss_pred CCCCCccceE------eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeee----EEEeccCCc
Confidence 3446554444 34444443 3444444 45699999999999999998741110 111100 011112378
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcc-cEE---EEc-CCCC-EEEEEeccCCCCeEE
Q 000055 2274 ISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAM-DVS---YIT-SSGS-VIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2274 VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~-~V~---afS-pdGs-lLATgG~SS~DGtVr 2347 (2548)
+.++..-+.++.+|.++.||.|.+.+++...... ...........+.. .+. ++. ..+. .++.+. ..+.|.
T Consensus 1101 ~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~-~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T---~~~~iv 1176 (1431)
T KOG1240|consen 1101 VEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSK-RVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT---DLSRIV 1176 (1431)
T ss_pred eEEEEeccCCCeEEEEcCCCeEEEEEcccccccc-ceeeeeecccccCCCceEEeecccccccceeEEEEE---eccceE
Confidence 9999999999999999999999999998621100 00001111122222 222 122 2333 566654 789999
Q ss_pred EEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccc
Q 000055 2348 VWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCA 2427 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~ 2427 (2548)
.||+++...-.........|.|++++.+|. +.++++|...|.+-+||+|+ +..+...
T Consensus 1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~-------~~WlviGts~G~l~lWDLRF---~~~i~sw------------- 1233 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPW-------CNWLVIGTSRGQLVLWDLRF---RVPILSW------------- 1233 (1431)
T ss_pred EecchhhhhHHhhhcCccccceeEEEecCC-------ceEEEEecCCceEEEEEeec---Cceeecc-------------
Confidence 999986322223333345688999999998 67999999999999999885 1222221
Q ss_pred cccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCC---CEEEEEe--CCCcEEEEECCCCcEEEEeccccccccc-
Q 000055 2428 HADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNT---SLFLTGS--KDGDVKLWDAKAAQLVYHWSKLHERHTF- 2501 (2548)
Q Consensus 2428 vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG---~~LaSGS--~DGtIrIWDl~Tgell~tL~~~Hs~hsf- 2501 (2548)
. .++..+|+.|..+|-. ...++++ ..+.|.+|++.+|.+-.++........+
T Consensus 1234 --------------------~--~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls 1291 (1431)
T KOG1240|consen 1234 --------------------E--HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILS 1291 (1431)
T ss_pred --------------------c--CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchh
Confidence 1 3355788888877732 4555554 4678999999999887777432111110
Q ss_pred -ccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000055 2502 -LQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2502 -l~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
..|.-..-...-.+++.+.-..+++ +++||.|+.||.||....
T Consensus 1292 ~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1292 YALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred hhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 0111000001111334444455666 889999999999998753
No 175
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.30 E-value=1.2e-10 Score=151.72 Aligned_cols=253 Identities=15% Similarity=0.186 Sum_probs=164.7
Q ss_pred EEEEEEcCCC-CEEEEEECCCeEEEEEcCCCce--eEEEeccCCCCCCCCCCCCCeEEEEEccC--CCEEEEEeCCCcEE
Q 000055 2222 TRAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKA--TATYGVLPAANVPPPYALASISALQFDHY--GHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG-~~LASGS~DGsVrLWDl~tg~~--l~t~~~l~ghs~~~~~H~~~VtsVaFSPd--G~~LaSGS~DGtVr 2296 (2548)
+.|+.|+|.. .+++.|..+|.|.+||+..+.. ...+.. ....|...|+.+.|..+ +..|++++.||.|+
T Consensus 245 v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~------~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA------LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred eeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc------ccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 7999999965 5677889999999999987655 222221 23457899999999764 45599999999999
Q ss_pred EEEcCCCccc-ccccCccce----ecc-CCcccEEEEcC-CCCEEEEEeccCCCCeEEEEECCCC--CC----Ccceeee
Q 000055 2297 TWQLEVGGRS-NVRPMESCL----CFS-SHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAP--PT----SSRASIT 2363 (2548)
Q Consensus 2297 VWDl~tgk~i-~i~p~~s~~----t~~-gH~~~V~afSp-dGslLATgG~SS~DGtVrIWDl~t~--~~----k~v~sl~ 2363 (2548)
.|+++.-... ......... ... .+......|.+ +-..+++|. ++|.|.--+.... .. +....+.
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT---e~G~v~~~~r~g~~~~~~~~~~~~~~~~ 395 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT---EEGKVYKGCRKGYTPAPEVSYKGHSTFI 395 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc---CCcEEEEEeccCCccccccccccccccc
Confidence 9988743220 000000000 011 11122223443 445677764 8998877332211 11 2244666
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000055 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
.|.+.|+++.++|-. ...+.+++ |.+|+||.-.. ....+..+
T Consensus 396 ~h~g~v~~v~~nPF~------~k~fls~g-DW~vriWs~~~--~~~Pl~~~----------------------------- 437 (555)
T KOG1587|consen 396 THIGPVYAVSRNPFY------PKNFLSVG-DWTVRIWSEDV--IASPLLSL----------------------------- 437 (555)
T ss_pred ccCcceEeeecCCCc------cceeeeec-cceeEeccccC--CCCcchhh-----------------------------
Confidence 889999999999873 44555655 99999999320 11111111
Q ss_pred ceEEEcccCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCc--EEEEecccccccccccCcccCCCCceeecEEEE
Q 000055 2444 GMLWYIPKAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQ--LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDI 2520 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tge--ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsL 2520 (2548)
..+...|++++|+|.. ..|+++..||.|.+||+.... ++.+. .-+ . ...+.+
T Consensus 438 -------~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~--------------~~~-~---~~l~~~ 492 (555)
T KOG1587|consen 438 -------DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ--------------KVC-S---PALTRV 492 (555)
T ss_pred -------hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc--------------ccc-c---ccccee
Confidence 4466679999999964 678888889999999997433 33222 111 1 234566
Q ss_pred EEcCCe--EEEEECCCcEEEEECCCCcc
Q 000055 2521 QVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2521 afSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
.|++.| ++.|...|++.+|++.....
T Consensus 493 ~~s~~g~~lavGd~~G~~~~~~l~~~l~ 520 (555)
T KOG1587|consen 493 RWSPNGKLLAVGDANGTTHILKLSESLA 520 (555)
T ss_pred ecCCCCcEEEEecCCCcEEEEEcCchhh
Confidence 889988 88889999999999976543
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.30 E-value=2.3e-11 Score=140.20 Aligned_cols=247 Identities=14% Similarity=0.204 Sum_probs=171.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.|..+++ |.+|..-|.|.+|++.+.+....++.+ |...|+.+.--|+ ..+.+-+.|+.+.+|++.
T Consensus 17 v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~---------g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 17 VTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLF---------GRLFITNLQSIPN-DSLDTQGRDPLLILWTIA 85 (323)
T ss_pred heehhhccchh-hhcccccceEEEEEeecCccchhhhhh---------ccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence 46666656654 899999999999999998887776532 3477888888887 558899999999999987
Q ss_pred CCccccccc----------C-------cc--ceec--------------------------cCCcccEEEEc----CCCC
Q 000055 2302 VGGRSNVRP----------M-------ES--CLCF--------------------------SSHAMDVSYIT----SSGS 2332 (2548)
Q Consensus 2302 tgk~i~i~p----------~-------~s--~~t~--------------------------~gH~~~V~afS----pdGs 2332 (2548)
-+..+.+.. + .. .... .+..+.+.++. ....
T Consensus 86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~ 165 (323)
T KOG0322|consen 86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST 165 (323)
T ss_pred CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence 532111000 0 00 0000 01122344433 1234
Q ss_pred EEEEEeccCCCCeEEEEECCCCC--------CCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc
Q 000055 2333 VIAAAGHSSNGINVVVWDTLAPP--------TSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY 2404 (2548)
Q Consensus 2333 lLATgG~SS~DGtVrIWDl~t~~--------~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~ 2404 (2548)
.++.+|+ ++|.|.+||+.+.+ .+.+.....|.++|.++.|.+. ...=++|+.+..+..|++..
T Consensus 166 ~lllaGy--Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-------~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 166 FLLLAGY--ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-------CDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred EEEEEec--cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-------hcCCcCCCccccceeeeecc
Confidence 5666674 79999999998631 1233445579999999999876 33456788888888998641
Q ss_pred cccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000055 2405 IATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2405 l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.++.+.... ..+-..-.|..+..-||++.+||+|.||.||||+.+
T Consensus 237 -s~gslq~~~----------------------------------e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 237 -STGSLQIRK----------------------------------EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred -ccCcccccc----------------------------------eEEecCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence 222211000 001123467788999999999999999999999999
Q ss_pred CCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEEC
Q 000055 2485 AAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2485 Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
+.+++..+ +-|. ++|.+++|+|+- +|++|.|++|-+|++
T Consensus 282 tl~pLAVL--------------kyHs----agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 282 TLNPLAVL--------------KYHS----AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCchhhh--------------hhhh----cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999866 5576 567888999994 889999999999986
No 177
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=8.2e-12 Score=152.82 Aligned_cols=289 Identities=16% Similarity=0.196 Sum_probs=203.4
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEE
Q 000055 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASA 2289 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSG 2289 (2548)
...+..|. +..+.|...|..+++|+.|..|.+|||..+.....+. .+|...|..-.|-| +...++++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~---------SGH~~NvfQaKFiP~s~d~ti~~~ 205 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE---------SGHCNNVFQAKFIPFSGDRTIVTS 205 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc---------cccccchhhhhccCCCCCcCceec
Confidence 33445544 7899999999999999999999999999988777763 35678899889988 46779999
Q ss_pred eCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcc-eeeecc
Q 000055 2290 ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSR-ASITCH 2365 (2548)
Q Consensus 2290 S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v-~sl~gH 2365 (2548)
+.||.|++=.+...+... ..+....|.+.|. ++-|+ ...|.++| .|+.|.-.|++....... ..-..+
T Consensus 206 s~dgqvr~s~i~~t~~~e-----~t~rl~~h~g~vhklav~p~sp~~f~S~g---eD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVE-----NTKRLAPHEGPVHKLAVEPDSPKPFLSCG---EDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred cccCceeeeeecccccee-----cceecccccCccceeeecCCCCCcccccc---cccceeeeeeccCCccceeeeeccC
Confidence 999999998764332111 1123455555554 34443 35677876 899999999986322222 222234
Q ss_pred CC---CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCce---eeee--cCCCCCCCccccccccCCCCC-C
Q 000055 2366 EG---GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKT---KKHK--HSDRGGSSINTCAHADAQTGS-G 2436 (2548)
Q Consensus 2366 s~---~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~---l~tl--~~~~~~s~~~~~~vafSpdGk-~ 2436 (2548)
.. ...+++..|.+ ...+++|+.|..+++||.|.+..... +.++ +.........+++++++.++. +
T Consensus 278 ~~~~v~L~~Ia~~P~n------t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRN------TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred CccceeeeeEecCCCC------ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 44 57889999985 67999999999999999886443311 1111 111224455677788885543 3
Q ss_pred -ccCCCCCceEEE---------------------cccCCCC--CEEEEE-EeCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000055 2437 -SKPGDQNGMLWY---------------------IPKAHLG--SVTRIS-TVPNTSLFLTGSKDGDVKLWDAKAAQLVYH 2491 (2548)
Q Consensus 2437 -v~s~D~sv~Iwd---------------------i~~gH~~--~VtsLa-fSPdG~~LaSGS~DGtIrIWDl~Tgell~t 2491 (2548)
+...|..++++. +++||.. .|.++- |-|...|+++||.-|.|.||+-.+++.+..
T Consensus 352 LaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~ 431 (559)
T KOG1334|consen 352 LASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF 431 (559)
T ss_pred eeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH
Confidence 444444555553 2567865 566765 568889999999999999999999998875
Q ss_pred ecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000055 2492 WSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2492 L~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
+ .|-.. +|.|+.-+|.- |||+|-|..||||...+
T Consensus 432 M--------------egDr~----VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 432 M--------------EGDRH----VVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred h--------------hcccc----eEeccCCCCCCchhhccCCccceeeecCCc
Confidence 5 23222 36777888887 89999999999998743
No 178
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1e-11 Score=164.38 Aligned_cols=204 Identities=18% Similarity=0.286 Sum_probs=157.2
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 000055 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWD 2299 (2548)
|+.+.|++... +||+|+.||.|.|||+.+-+...++. ...-.+.|.+++|+. ..+.|++++.+|.+.|||
T Consensus 119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--------CCCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence 68899999765 99999999999999998755443332 111247899999997 477899999999999999
Q ss_pred cCCCcccccccCccceeccCCcc----cEEEEcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000055 2300 LEVGGRSNVRPMESCLCFSSHAM----DVSYITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~----~V~afSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
++..+.+- .+..+.. .+..|+|+.. .++++..+...-.|.+||+|.. ..+++.+++|..+|.++.|
T Consensus 191 lr~~~pii--------~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-ssP~k~~~~H~~GilslsW 261 (1049)
T KOG0307|consen 191 LRKKKPII--------KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-SSPLKILEGHQRGILSLSW 261 (1049)
T ss_pred ccCCCccc--------ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-CCchhhhcccccceeeecc
Confidence 99664221 1222322 2335888764 4555532213347999999964 6678889999999999999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000055 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
++.| ..+++|++.|+.|.+|+ ..+|+.+..+ ....
T Consensus 262 c~~D------~~lllSsgkD~~ii~wN---~~tgEvl~~~------------------------------------p~~~ 296 (1049)
T KOG0307|consen 262 CPQD------PRLLLSSGKDNRIICWN---PNTGEVLGEL------------------------------------PAQG 296 (1049)
T ss_pred CCCC------chhhhcccCCCCeeEec---CCCceEeeec------------------------------------CCCC
Confidence 9996 78999999999999999 7778877776 3456
Q ss_pred CCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCc
Q 000055 2455 GSVTRISTVPNTS-LFLTGSKDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2455 ~~VtsLafSPdG~-~LaSGS~DGtIrIWDl~Tge 2487 (2548)
+++..+.|+|... .++.++.||.|-|+.+..+.
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 7899999999665 88888999999999997654
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.27 E-value=7.1e-12 Score=159.45 Aligned_cols=264 Identities=17% Similarity=0.270 Sum_probs=186.6
Q ss_pred CccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000055 2215 ATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
..+.+|. |.|+.|...|.++++|+.|..|+||..+++.++..+++ |.+.|+.++.+.+..++++++.|
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG----------hs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG----------HSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC----------CccccchhccchhhhhhhhcccC
Confidence 3455665 78999999999999999999999999999988887643 56999999999999999999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCC-cceeeec-cCCC
Q 000055 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTS-SRASITC-HEGG 2368 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k-~v~sl~g-Hs~~ 2368 (2548)
..|++|.+..+..+. .+.+|++.|++ |+|-. +. +.||++++||.+-.... .-..... ..+.
T Consensus 254 ~vIrvWrl~~~~pvs--------vLrghtgavtaiafsP~~----ss---s~dgt~~~wd~r~~~~~y~prp~~~~~~~~ 318 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVS--------VLRGHTGAVTAIAFSPRA----SS---SDDGTCRIWDARLEPRIYVPRPLKFTEKDL 318 (1113)
T ss_pred ceEEEEecCCCchHH--------HHhccccceeeeccCccc----cC---CCCCceEeccccccccccCCCCCCcccccc
Confidence 999999999886443 37899999986 66643 32 48999999998721110 1011111 1244
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCC-CC--ccCCCCCce
Q 000055 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTG-SG--SKPGDQNGM 2445 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdG-k~--v~s~D~sv~ 2445 (2548)
+.++.+... +.-+.||+.|+.-..|.+.++.-......+ +..+.+- .+ .+-.+....
T Consensus 319 ~~s~~~~~~-------~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif-------------~t~ssd~~~~~~~ar~~~~~~ 378 (1113)
T KOG0644|consen 319 VDSILFENN-------GDRFLTGSRDGEARNHEFEQLAWRSNLLIF-------------VTRSSDLSSIVVTARNDHRLC 378 (1113)
T ss_pred eeeeecccc-------ccccccccCCcccccchhhHhhhhccceEE-------------EeccccccccceeeeeeeEee
Confidence 555555444 678999999999999986542211111111 1111111 11 233334456
Q ss_pred EEEcc--------cCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeec
Q 000055 2446 LWYIP--------KAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAG 2516 (2548)
Q Consensus 2446 Iwdi~--------~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~ 2516 (2548)
+|+.. .+|...+..+.++| +.+...+++.||...|||+-.|.+++.+ +.||+..+
T Consensus 379 vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y-------------~~gh~kl~--- 442 (1113)
T KOG0644|consen 379 VWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY-------------FIGHGKLV--- 442 (1113)
T ss_pred eeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee-------------ecccceee---
Confidence 67643 46889999999999 5566778899999999999999998877 36676433
Q ss_pred EEEEEEcCCe--EEEEECCCcEEEEEC
Q 000055 2517 VTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2517 VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
+.+||++| ++....-|.+.|...
T Consensus 443 --d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 443 --DGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred --ccccCCCCceEecCCCCCceEEecc
Confidence 44899998 554444567776654
No 180
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.27 E-value=8.7e-11 Score=138.77 Aligned_cols=279 Identities=11% Similarity=0.075 Sum_probs=178.9
Q ss_pred EEEEEEcC----CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC----CCEEEEEeCCC
Q 000055 2222 TRAFSSHP----LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY----GHRFASAALDG 2293 (2548)
Q Consensus 2222 V~~VsfSP----dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd----G~~LaSGS~DG 2293 (2548)
+..++|++ +...+++......+.||+......+..+..... ..|.+.-..++|.-+ ..++|.|+.-|
T Consensus 41 I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D-----~d~~Esfytcsw~yd~~~~~p~la~~G~~G 115 (385)
T KOG1034|consen 41 IFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYAD-----EDHDESFYTCSWSYDSNTGNPFLAAGGYLG 115 (385)
T ss_pred cceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccC-----CCCCcceEEEEEEecCCCCCeeEEeeccee
Confidence 44555543 333444444456788998875433333322111 125577888999753 56889999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceee---eccCC
Q 000055 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASI---TCHEG 2367 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl---~gHs~ 2367 (2548)
.|+|.|+.+++... .+.+|...|.. +.|+. ++++++ |.|..|++|++++ ..++..+ .||.+
T Consensus 116 vIrVid~~~~~~~~--------~~~ghG~sINeik~~p~~~qlvls~---SkD~svRlwnI~~--~~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 116 VIRVIDVVSGQCSK--------NYRGHGGSINEIKFHPDRPQLVLSA---SKDHSVRLWNIQT--DVCVAVFGGVEGHRD 182 (385)
T ss_pred EEEEEecchhhhcc--------ceeccCccchhhhcCCCCCcEEEEe---cCCceEEEEeccC--CeEEEEecccccccC
Confidence 99999999876432 36788888774 55654 677776 5999999999987 5676555 47999
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc--cCCCCCce
Q 000055 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS--KPGDQNGM 2445 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v--~s~D~sv~ 2445 (2548)
.|.++.|+++ +..++++|.|.++++|++.. .+....+ .....+++++..- -.......
T Consensus 183 eVLSvD~~~~-------gd~i~ScGmDhslk~W~l~~---~~f~~~l----------E~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 183 EVLSVDFSLD-------GDRIASCGMDHSLKLWRLNV---KEFKNKL----------ELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred cEEEEEEcCC-------CCeeeccCCcceEEEEecCh---hHHhhhh----------hhhcccCCCCccCcCCccccccc
Confidence 9999999999 78999999999999999642 1111111 1223455554431 11111122
Q ss_pred EEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC-CCcEEEEecccccccccccCcccCCCCceeecEEEE--EE
Q 000055 2446 LWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK-AAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDI--QV 2522 (2548)
Q Consensus 2446 Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~-Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsL--af 2522 (2548)
.+.....|...|-|+.| -|+++++=|-++.|..|... -++.++..+......+ .-++-+.-.+.++-+ +|
T Consensus 243 ~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~T-----i~~~~~~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATT-----ILGEFDYPMCDIWFIRFAF 315 (385)
T ss_pred cccccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCcccee-----eeeEeccCccceEEEEEee
Confidence 22244679999999998 47899999999999999873 2333322211111111 112222112334444 45
Q ss_pred cCCe--EEEEECCCcEEEEECCCCc
Q 000055 2523 VSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2523 SPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+|-+ ||.|...|+|.+|||++..
T Consensus 316 d~~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 316 DPWQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred cHHHHHHhhccCCCcEEEEECCCCC
Confidence 5555 8899999999999998753
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=4.7e-11 Score=148.77 Aligned_cols=251 Identities=18% Similarity=0.233 Sum_probs=166.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCC-----CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGK-----DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~t-----g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVr 2296 (2548)
++.+.|+|..+.|++++.||.+.+|++.. ...+..+-.+. +|.++|.|++..+++..+++|+.||+|+
T Consensus 297 ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-------aH~gPVl~v~v~~n~~~~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 297 IRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-------AHEGPVLCVVVPSNGEHCYSGGIDGTIR 369 (577)
T ss_pred hhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-------cccCceEEEEecCCceEEEeeccCceee
Confidence 68899999999999999999999999942 11222222222 3669999999999999999999999999
Q ss_pred EEEcCCCccc--ccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000055 2297 TWQLEVGGRS--NVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2297 VWDl~tgk~i--~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
.|++...... ...+.....++.||...|+ +++.....|+++. .||+|++|+.... ..+........+.-.++
T Consensus 370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs---~DgTvr~w~~~~~-~~~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS---SDGTVRLWEPTEE-SPCTFGEPKEHGYPLSV 445 (577)
T ss_pred eeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeec---CCceEEeeccCCc-CccccCCccccCCcceE
Confidence 9987522100 0112223356889999986 4777777788874 8999999998642 11222222333444556
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC---CCCCccccccccCCCCCC--ccCCCCCceEE
Q 000055 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR---GGSSINTCAHADAQTGSG--SKPGDQNGMLW 2447 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~---~~s~~~~~~vafSpdGk~--v~s~D~sv~Iw 2447 (2548)
.+-... -...++...-+.-.+.| +.++..++.+.... ....+.+..+...|++.. .+..++.++++
T Consensus 446 d~~ss~------~a~~~~s~~~~~~~~~~---~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~ 516 (577)
T KOG0642|consen 446 DRTSSR------PAHSLASFRFGYTSIDD---MEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF 516 (577)
T ss_pred eeccch------hHhhhhhcccccccchh---hhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence 554331 11233333333333333 44455544442221 122234445556666544 55666777777
Q ss_pred Ec--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000055 2448 YI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2448 di--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
+. ..+|...++++++.|+|.+|++|+.||.+++|.+....++...
T Consensus 517 dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 517 DNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred cccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 63 3468899999999999999999999999999999877777644
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.24 E-value=2.5e-10 Score=133.03 Aligned_cols=249 Identities=14% Similarity=0.180 Sum_probs=163.6
Q ss_pred EEEEEEc--CC-CCEEEEEEC----CCeEEEEEcC--CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCC-----CEEE
Q 000055 2222 TRAFSSH--PL-RPFFLVGSS----NTHIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFDHYG-----HRFA 2287 (2548)
Q Consensus 2222 V~~VsfS--Pd-G~~LASGS~----DGsVrLWDl~--tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG-----~~La 2287 (2548)
..++.|+ |+ +.+||.|+- .+.|.|-.++ +++.+.. ....|.-+++.+.|.|+. .+||
T Consensus 47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~---------a~fd~~YP~tK~~wiPd~~g~~pdlLA 117 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED---------ANFDHPYPVTKLMWIPDSKGVYPDLLA 117 (364)
T ss_pred eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc---------CCCCCCCCccceEecCCccccCcchhh
Confidence 3455555 32 346777753 4566666655 2332222 123366789999999975 3566
Q ss_pred EEeCCCcEEEEEcCCCcc-cccccCccceeccCCcccEEEEcC---CCCEEEEEeccCCCCeEEEEECCCC-CCCcceee
Q 000055 2288 SAALDGTVCTWQLEVGGR-SNVRPMESCLCFSSHAMDVSYITS---SGSVIAAAGHSSNGINVVVWDTLAP-PTSSRASI 2362 (2548)
Q Consensus 2288 SGS~DGtVrVWDl~tgk~-i~i~p~~s~~t~~gH~~~V~afSp---dGslLATgG~SS~DGtVrIWDl~t~-~~k~v~sl 2362 (2548)
|++ -.+|+|.+..... ...........-..+..++++|.. +-++|.+. |-|-+..|||+..+ .+.....+
T Consensus 118 Ts~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS---SiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 118 TSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS---SIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred ccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEee---cccCeEEEEEEeeccccceeeEE
Confidence 554 4899999974321 110000000112233445665543 45777776 59999999999874 23345567
Q ss_pred eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCC
Q 000055 2363 TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQ 2442 (2548)
Q Consensus 2363 ~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~ 2442 (2548)
-+|...|..|+|.... -+++++.|.||.||+||+|.+.-...+..-
T Consensus 193 IAHDKEV~DIaf~~~s------~~~FASvgaDGSvRmFDLR~leHSTIIYE~---------------------------- 238 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGS------RDVFASVGADGSVRMFDLRSLEHSTIIYED---------------------------- 238 (364)
T ss_pred EecCcceeEEEeccCc------cceEEEecCCCcEEEEEecccccceEEecC----------------------------
Confidence 7999999999998863 569999999999999998853222221110
Q ss_pred CceEEEcccCCCCCEEEEEEeC-CCCEEEEEeCCC-cEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEE
Q 000055 2443 NGMLWYIPKAHLGSVTRISTVP-NTSLFLTGSKDG-DVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2443 sv~Iwdi~~gH~~~VtsLafSP-dG~~LaSGS~DG-tIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
.....+...++|++ |-+++||-..|. .|.|-|++. ..++.+ +++|.+.| ..
T Consensus 239 --------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~--------------L~~H~a~V----Ng 292 (364)
T KOG0290|consen 239 --------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR--------------LRNHQASV----NG 292 (364)
T ss_pred --------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh--------------hhcCcccc----cc
Confidence 11245778889988 457888876654 799999985 344443 48998655 55
Q ss_pred EEEcCCe---EEEEECCCcEEEEECCCC
Q 000055 2520 IQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2520 LafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
|+|.|.. |.|||+|..+-+||+..-
T Consensus 293 IaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 293 IAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred eEecCCCCceeeecCCcceEEEEecccc
Confidence 6999987 999999999999999753
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1.3e-10 Score=143.15 Aligned_cols=250 Identities=16% Similarity=0.144 Sum_probs=165.1
Q ss_pred cCCCCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEE
Q 000055 2211 VDPPATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRF 2286 (2548)
Q Consensus 2211 v~p~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~L 2286 (2548)
+...+.+.||. |.|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+. .+|.+.|.++.|-| +.+.+
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~---------TgHtaNIFsvKFvP~tnnriv 110 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS---------TGHTANIFSVKFVPYTNNRIV 110 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee---------cccccceeEEeeeccCCCeEE
Confidence 44456778887 9999999999999999999999999998777777653 46789999999999 46789
Q ss_pred EEEeCCCcEEEEEcCCCccc--ccccCccceeccCCcccEE--EEcCCC-CEEEEEeccCCCCeEEEEECCCCCCCccee
Q 000055 2287 ASAALDGTVCTWQLEVGGRS--NVRPMESCLCFSSHAMDVS--YITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRAS 2361 (2548)
Q Consensus 2287 aSGS~DGtVrVWDl~tgk~i--~i~p~~s~~t~~gH~~~V~--afSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~s 2361 (2548)
++|+.|..|+++|+...+.. .-....+..++..|...|. +..|++ +.+.+++ .||+|+-+|++.+ ..+...
T Consensus 111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas---EDGtirQyDiREp-h~c~p~ 186 (758)
T KOG1310|consen 111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS---EDGTIRQYDIREP-HVCNPD 186 (758)
T ss_pred EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEec---CCcceeeecccCC-ccCCcc
Confidence 99999999999999753211 1122234455677777665 345666 7788875 9999999999864 222222
Q ss_pred ee---------ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc----cccc
Q 000055 2362 IT---------CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN----TCAH 2428 (2548)
Q Consensus 2362 l~---------gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~----~~~v 2428 (2548)
.. ..--...|+..+|.+ ..+|++|+.|-..++||.|. .+..+........+. -+..
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~r------p~~laVGgsdpfarLYD~Rr-----~lks~~s~~~~~~~pp~~~~cv~ 255 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSR------PYYLAVGGSDPFARLYDRRR-----VLKSFRSDGTMNTCPPKDCRCVR 255 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCC------CceEEecCCCchhhhhhhhh-----hccCCCCCccccCCCCcccchhh
Confidence 21 122356788999986 78999999999999999663 222221111111110 1222
Q ss_pred ccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000055 2429 ADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
-|+|.+.. ...++... --..++-++|+|+|.-|+..-..-.|+++|+..++....+
T Consensus 256 yf~p~hlk--n~~gn~~~------~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 256 YFSPGHLK--NSQGNLDR------YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred eecCcccc--Cccccccc------ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 33443321 11111000 0113566889999866555444458999999876654433
No 184
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=2.3e-10 Score=149.01 Aligned_cols=266 Identities=16% Similarity=0.205 Sum_probs=171.8
Q ss_pred cccccCCccccCCCCccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcC-----CCceeEEEeccCCCCCCCCCCCCCeE
Q 000055 2201 WETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFG-----KDKATATYGVLPAANVPPPYALASIS 2275 (2548)
Q Consensus 2201 W~~~ed~e~~v~p~~tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~-----tg~~l~t~~~l~ghs~~~~~H~~~Vt 2275 (2548)
|+....+..|-.-.....+|+-.++--.-|..++++|+.||.||||+-- +.+.+.....+.+.. +.. .+.=.
T Consensus 1093 ~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~-~~~--r~~~~ 1169 (1387)
T KOG1517|consen 1093 WEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQL-PGA--RGTGL 1169 (1387)
T ss_pred cccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccC-ccC--CCCCe
Confidence 4433333333333333334433333323456789999999999999743 234445554444432 111 12225
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcC---CCCEEEEEeccCCCCeEEEEECC
Q 000055 2276 ALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS---SGSVIAAAGHSSNGINVVVWDTL 2352 (2548)
Q Consensus 2276 sVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSp---dGslLATgG~SS~DGtVrIWDl~ 2352 (2548)
-+.|.....+|+++|.-..|+|||........-.|. +....++++++ .|+.|++|- .||.|++||.+
T Consensus 1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~-------~s~t~vTaLS~~~~~gn~i~AGf---aDGsvRvyD~R 1239 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY-------GSSTLVTALSADLVHGNIIAAGF---ADGSVRVYDRR 1239 (1387)
T ss_pred eeehhhhCCeEEecCCeeEEEEEecccceeEeeccc-------CCCccceeecccccCCceEEEee---cCCceEEeecc
Confidence 577888666677777689999999987654433322 23344555443 478888875 79999999999
Q ss_pred CCCCC-cceeeeccCCC--eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccc
Q 000055 2353 APPTS-SRASITCHEGG--ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHA 2429 (2548)
Q Consensus 2353 t~~~k-~v~sl~gHs~~--VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~va 2429 (2548)
.+... .+...+.|+.. |..+.+.+.. -..|++|+.||.|++||+|+. ......+...+... ....+.+.
T Consensus 1240 ~a~~ds~v~~~R~h~~~~~Iv~~slq~~G------~~elvSgs~~G~I~~~DlR~~-~~e~~~~iv~~~~y-Gs~lTal~ 1311 (1387)
T KOG1517|consen 1240 MAPPDSLVCVYREHNDVEPIVHLSLQRQG------LGELVSGSQDGDIQLLDLRMS-SKETFLTIVAHWEY-GSALTALT 1311 (1387)
T ss_pred cCCccccceeecccCCcccceeEEeecCC------CcceeeeccCCeEEEEecccC-cccccceeeecccc-Cccceeee
Confidence 76544 46777789887 9999998873 227999999999999999952 22222221111100 11245667
Q ss_pred cCCCCCCccCCC-CCceEEEcc--------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 000055 2430 DAQTGSGSKPGD-QNGMLWYIP--------------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2430 fSpdGk~v~s~D-~sv~Iwdi~--------------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge 2487 (2548)
.++...+++++. +.++||++. ....+.+.|++|||.--++|+|+.|.+|.||....++
T Consensus 1312 VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1312 VHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 777777755555 778899842 1235678999999999999999999999999876543
No 185
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.2e-10 Score=142.00 Aligned_cols=201 Identities=19% Similarity=0.219 Sum_probs=143.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000055 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.+++|+.+|..+++|+.||++|||++.....+... ..|.+.|.++.|+|||++|++-+.| ..+||++++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e----------~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE----------IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT 216 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh----------HhhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence 78889999999999999999999998765544332 2255899999999999999999999 999999999
Q ss_pred CcccccccCccceeccCCcc-cEEEEcCCC---CEEEEEeccCCCCeEEEEECCCCCCC---cceeeeccCCCeEEEEEc
Q 000055 2303 GGRSNVRPMESCLCFSSHAM-DVSYITSSG---SVIAAAGHSSNGINVVVWDTLAPPTS---SRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~-~V~afSpdG---slLATgG~SS~DGtVrIWDl~t~~~k---~v~sl~gHs~~VtSLafs 2375 (2548)
|..+..... +.+... .-+.|+.++ .+.+.+.. ...+.|+.||+..-.+. ...........|.+++++
T Consensus 217 g~~~a~~t~-----~~k~~~~~~cRF~~d~~~~~l~laa~~-~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS 290 (398)
T KOG0771|consen 217 GAALARKTP-----FSKDEMFSSCRFSVDNAQETLRLAASQ-FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS 290 (398)
T ss_pred CchhhhcCC-----cccchhhhhceecccCCCceEEEEEec-CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence 854332110 111100 111254444 22222221 25667777776542221 111222334589999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000055 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
++ |++++.|+.||.|-|++. .+-++++.. .+.|..
T Consensus 291 ~d-------Gkf~AlGT~dGsVai~~~---~~lq~~~~v-----------------------------------k~aH~~ 325 (398)
T KOG0771|consen 291 DD-------GKFLALGTMDGSVAIYDA---KSLQRLQYV-----------------------------------KEAHLG 325 (398)
T ss_pred CC-------CcEEEEeccCCcEEEEEe---ceeeeeEee-----------------------------------hhhhee
Confidence 98 899999999999999994 333443333 378999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000055 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
.|+.+.|+|+.+++++.+.|..+.|..+.-
T Consensus 326 ~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 326 FVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999999999998887753
No 186
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.22 E-value=1.8e-10 Score=142.90 Aligned_cols=243 Identities=19% Similarity=0.222 Sum_probs=164.6
Q ss_pred cCCCCEEEE--EECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCc
Q 000055 2228 HPLRPFFLV--GSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGG 2304 (2548)
Q Consensus 2228 SPdG~~LAS--GS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl~tgk 2304 (2548)
+.+..++|+ .+..|.|.||++.....+ +...++.......|+++.|+| |...|++++.||.|++|.+..+.
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrL------PDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRL------PDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCC------CcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCC
Confidence 345566664 566799999998853211 111112222347899999999 78899999999999999998765
Q ss_pred ccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000055 2305 RSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2305 ~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
... ........+..|...|++ |+| ..+.++++ |.|.+|++||+++ .+....+.+|++.|.+++|+|+
T Consensus 662 l~e-~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a---syd~Ti~lWDl~~--~~~~~~l~gHtdqIf~~AWSpd---- 731 (1012)
T KOG1445|consen 662 LPE-NEMTPEKILTIHGEKITSLRFHPLAADVLAVA---SYDSTIELWDLAN--AKLYSRLVGHTDQIFGIAWSPD---- 731 (1012)
T ss_pred CCc-ccCCcceeeecccceEEEEEecchhhhHhhhh---hccceeeeeehhh--hhhhheeccCcCceeEEEECCC----
Confidence 322 223445668899999986 666 34677777 4899999999987 5667788999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCce-eeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000055 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKT-KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~-l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
|..+++.+.||+|++|+-|. +.. ++.- +.. .+ ..--.+
T Consensus 732 ---Gr~~AtVcKDg~~rVy~Prs---~e~pv~Eg--------------------~gp-------------vg--tRgARi 770 (1012)
T KOG1445|consen 732 ---GRRIATVCKDGTLRVYEPRS---REQPVYEG--------------------KGP-------------VG--TRGARI 770 (1012)
T ss_pred ---CcceeeeecCceEEEeCCCC---CCCccccC--------------------CCC-------------cc--CcceeE
Confidence 89999999999999999552 221 1110 000 01 122346
Q ss_pred EEeCCCCEEEEEeCCC----cEEEEECCC--CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEE
Q 000055 2461 STVPNTSLFLTGSKDG----DVKLWDAKA--AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCG 2531 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DG----tIrIWDl~T--gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS 2531 (2548)
.|.-+|+++++.|.|. .|.+||.++ +..+.+.--.-+... .|. .+++|. ++||-
T Consensus 771 ~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~---------------LvP--~YD~Ds~~lfltGK 833 (1012)
T KOG1445|consen 771 LWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSP---------------LVP--HYDYDSNVLFLTGK 833 (1012)
T ss_pred EEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCcc---------------ccc--cccCCCceEEEecC
Confidence 6777899888877754 678888764 333433210000000 010 244444 78999
Q ss_pred CCCcEEEEECCCC
Q 000055 2532 GDGSVKLIQLEDY 2544 (2548)
Q Consensus 2532 ~DGtIrIWDL~sg 2544 (2548)
+|..|.+|.+-..
T Consensus 834 GD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 834 GDRFVNMYEVIYE 846 (1012)
T ss_pred CCceEEEEEecCC
Confidence 9999999998644
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.21 E-value=2.9e-09 Score=132.54 Aligned_cols=270 Identities=9% Similarity=0.104 Sum_probs=160.5
Q ss_pred EEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEEcCCCcccccccCc
Q 000055 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCTWQLEVGGRSNVRPME 2312 (2548)
Q Consensus 2234 LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtVrVWDl~tgk~i~i~p~~ 2312 (2548)
+++...++.|++||+.+...+..++..+ +.+....++++|++++|++++ .++.|.+|+++.........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~--------~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~-- 74 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD--------VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAA-- 74 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe--------cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEee--
Confidence 4455779999999997432222222211 124567889999999887764 57899999997322111100
Q ss_pred cceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCC--CcceeeeccCCCeEEEEEccCCCCCCCCCCEE-E
Q 000055 2313 SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPT--SSRASITCHEGGARSISVFDNDLGSGSVSPLI-V 2389 (2548)
Q Consensus 2313 s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~--k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lL-V 2389 (2548)
. ....++.. -..++|+++.+++++. .++.|.+||+..... +.+..+. +.....+++++|+ ++++ +
T Consensus 75 ~-~~~~~~p~-~i~~~~~g~~l~v~~~--~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~-------g~~l~v 142 (330)
T PRK11028 75 E-SPLPGSPT-HISTDHQGRFLFSASY--NANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPD-------NRTLWV 142 (330)
T ss_pred e-ecCCCCce-EEEECCCCCEEEEEEc--CCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCC-------CCEEEE
Confidence 0 01112221 2358999999998863 589999999864211 1222222 2345677889998 5555 5
Q ss_pred EEeCCCcEEEEeCCccccCceeeee-cCCCCCCCccccccccCCCCCC--ccC-CCCCceEEEcccC--C----------
Q 000055 2390 TGGKGGDVGIHDFRYIATGKTKKHK-HSDRGGSSINTCAHADAQTGSG--SKP-GDQNGMLWYIPKA--H---------- 2453 (2548)
Q Consensus 2390 SGS~DGtVrLWDLR~l~TGk~l~tl-~~~~~~s~~~~~~vafSpdGk~--v~s-~D~sv~Iwdi~~g--H---------- 2453 (2548)
+...++.|.+||+.. .+...... .............++++|+|++ +.. .++.+.+|++... .
T Consensus 143 ~~~~~~~v~v~d~~~--~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~ 220 (330)
T PRK11028 143 PCLKEDRIRLFTLSD--DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM 220 (330)
T ss_pred eeCCCCEEEEEEECC--CCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC
Confidence 666779999999642 22221100 0000001122346789999997 333 3778888886421 0
Q ss_pred ------CCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000055 2454 ------LGSVTRISTVPNTSLFLTGSK-DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2454 ------~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
......+.++|+|++++++.. ++.|.+|++.......++. ++. ..+ .....++++|+|
T Consensus 221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~----~~~-----~~~------~~p~~~~~~~dg 285 (330)
T PRK11028 221 PADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE----GHQ-----PTE------TQPRGFNIDHSG 285 (330)
T ss_pred CCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe----EEE-----ecc------ccCCceEECCCC
Confidence 112235889999999999864 7899999986533111110 000 011 112356899999
Q ss_pred --EE-EEECCCcEEEEECC
Q 000055 2527 --FL-SCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2527 --La-SGS~DGtIrIWDL~ 2542 (2548)
|+ +...+++|.+|+++
T Consensus 286 ~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 286 KYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEEEccCCcEEEEEEc
Confidence 44 55569999999885
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.21 E-value=3e-10 Score=136.56 Aligned_cols=212 Identities=16% Similarity=0.177 Sum_probs=150.3
Q ss_pred ccCCeE--EEEEEEcCC-CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeC
Q 000055 2216 TVENIS--TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAAL 2291 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~ 2291 (2548)
.+.||+ +..++|+|. ...+|+|+.|.+|.||++..+.....+... .....+|...|.-|+|+|. .+.|++++.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltep---vv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEP---VVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccc---eEEEeecceeEEEEeecccchhhHhhccC
Confidence 345555 788999995 567889999999999999865433322110 0012457799999999995 678999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCC-
Q 000055 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGG- 2368 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~- 2368 (2548)
|.+|.+|++.+|+..- ++. |.+.|.+ |+.+|.++++++ .|+.|+|||.+. ++.+..-.+|.+.
T Consensus 153 Dn~v~iWnv~tgeali--------~l~-hpd~i~S~sfn~dGs~l~Ttc---kDKkvRv~dpr~--~~~v~e~~~heG~k 218 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALI--------TLD-HPDMVYSMSFNRDGSLLCTTC---KDKKVRVIDPRR--GTVVSEGVAHEGAK 218 (472)
T ss_pred CceEEEEeccCCceee--------ecC-CCCeEEEEEeccCCceeeeec---ccceeEEEcCCC--CcEeeecccccCCC
Confidence 9999999999986331 233 8887874 899999999986 999999999987 6777776788763
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEe---CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCce
Q 000055 2369 ARSISVFDNDLGSGSVSPLIVTGG---KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGM 2445 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS---~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~ 2445 (2548)
...+.|..+ +.++.||- .+..+-+||-..+...-....+
T Consensus 219 ~~Raifl~~-------g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el------------------------------- 260 (472)
T KOG0303|consen 219 PARAIFLAS-------GKIFTTGFSRMSERQIALWDPNNLEEPIALQEL------------------------------- 260 (472)
T ss_pred cceeEEecc-------CceeeeccccccccceeccCcccccCcceeEEe-------------------------------
Confidence 344555555 55554543 5788999996544443322222
Q ss_pred EEEcccCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCcE
Q 000055 2446 LWYIPKAHLGSVTRISTVPNTSLFLTGS-KDGDVKLWDAKAAQL 2488 (2548)
Q Consensus 2446 Iwdi~~gH~~~VtsLafSPdG~~LaSGS-~DGtIrIWDl~Tgel 2488 (2548)
...+.|.---|+|+..+++-+| .|+.|+-|.+..-.+
T Consensus 261 ------DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 261 ------DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ------ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 1223444445788888776665 499999999976553
No 189
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=5.7e-10 Score=131.08 Aligned_cols=239 Identities=12% Similarity=0.150 Sum_probs=159.5
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEEC
Q 000055 2274 ISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDT 2351 (2548)
Q Consensus 2274 VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl 2351 (2548)
..++.|++.|.+||+|+.||.|.+||+.+.... ..+.+|..+|+ ||+++|+.++|+ |.|..|.+||+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--------r~lsaH~~pi~sl~WS~dgr~Llts---S~D~si~lwDl 94 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--------RMLSAHVRPITSLCWSRDGRKLLTS---SRDWSIKLWDL 94 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh--------hhhhccccceeEEEecCCCCEeeee---cCCceeEEEec
Confidence 789999999999999999999999999876422 34789999887 499999999998 49999999999
Q ss_pred CCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000055 2352 LAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2352 ~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
.. +.+++.+. ..++|+...|+|.+ .+..+..-.+..-.+-++. .++...-...+............|.
T Consensus 95 ~~--gs~l~rir-f~spv~~~q~hp~k------~n~~va~~~~~sp~vi~~s---~~~h~~Lp~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 95 LK--GSPLKRIR-FDSPVWGAQWHPRK------RNKCVATIMEESPVVIDFS---DPKHSVLPKDDDGDLNSSASHGVFD 162 (405)
T ss_pred cC--CCceeEEE-ccCccceeeecccc------CCeEEEEEecCCcEEEEec---CCceeeccCCCcccccccccccccc
Confidence 87 55777665 47899999999996 4555555555555566632 1111111112222333333445688
Q ss_pred CCCCCc--cCCCCCceEEEcc--------cCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE---EEeccccc
Q 000055 2432 QTGSGS--KPGDQNGMLWYIP--------KAH-LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV---YHWSKLHE 2497 (2548)
Q Consensus 2432 pdGk~v--~s~D~sv~Iwdi~--------~gH-~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell---~tL~~~Hs 2497 (2548)
+.|+++ +.+.|.+.+++.. +.- ...|..+.++..|++|+.-+.|..||.|+++.---. .... .
T Consensus 163 r~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e---~ 239 (405)
T KOG1273|consen 163 RRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE---P 239 (405)
T ss_pred CCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC---h
Confidence 889984 4444555556521 111 257888999999999999999999999998621000 0000 0
Q ss_pred ccccccCcccCCCCcee-ecEEEEEEcCCe-EE--EEECCCcEEEEECCCCcc
Q 000055 2498 RHTFLQPSSRGFGGVVR-AGVTDIQVVSRG-FL--SCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~-a~VtsLafSPdG-La--SGS~DGtIrIWDL~sg~l 2546 (2548)
.|.+ .+.|+ ..-.++.||.+| ++ +.+.-..++||.-..|.+
T Consensus 240 ~~K~--------qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsL 284 (405)
T KOG1273|consen 240 EHKL--------QDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSL 284 (405)
T ss_pred hHHH--------HHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcce
Confidence 1111 01111 112456899999 33 334456799999876643
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.19 E-value=4.9e-11 Score=152.05 Aligned_cols=233 Identities=18% Similarity=0.187 Sum_probs=162.5
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCe
Q 000055 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGIN 2345 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGt 2345 (2548)
.+|..+|+|+.|...|.++++|+.|..|+||..+++.+.. ...||..++.. ++.+..+++++ |.|..
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA--------s~rGhs~ditdlavs~~n~~iaaa---S~D~v 255 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA--------SCRGHSGDITDLAVSSNNTMIAAA---SNDKV 255 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc--------cCCCCccccchhccchhhhhhhhc---ccCce
Confidence 4577999999999999999999999999999998876543 47899999984 55555566666 59999
Q ss_pred EEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000055 2346 VVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2346 VrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
|++|.+.. +.++..+.+|++.|++++|+|- .+.+.||++++||.|. ..-.. .............
T Consensus 256 IrvWrl~~--~~pvsvLrghtgavtaiafsP~-----------~sss~dgt~~~wd~r~-~~~~y--~prp~~~~~~~~~ 319 (1113)
T KOG0644|consen 256 IRVWRLPD--GAPVSVLRGHTGAVTAIAFSPR-----------ASSSDDGTCRIWDARL-EPRIY--VPRPLKFTEKDLV 319 (1113)
T ss_pred EEEEecCC--CchHHHHhccccceeeeccCcc-----------ccCCCCCceEeccccc-ccccc--CCCCCCcccccce
Confidence 99999976 7889999999999999999998 2678899999999872 11000 0000000001111
Q ss_pred cccccCCCCCC--ccCCCCCceEEEcc--cCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecccccccc
Q 000055 2426 CAHADAQTGSG--SKPGDQNGMLWYIP--KAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHT 2500 (2548)
Q Consensus 2426 ~~vafSpdGk~--v~s~D~sv~Iwdi~--~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hs 2500 (2548)
..+.+..++.- .+..++....|.+. ..|...+.-+.++.+. .+.+++-.+-.+++|++.+|++++.+
T Consensus 320 ~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l-------- 391 (1113)
T KOG0644|consen 320 DSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL-------- 391 (1113)
T ss_pred eeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh--------
Confidence 22233333222 45555555666532 2344443333333322 46666667888999999999888654
Q ss_pred cccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCCc
Q 000055 2501 FLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2501 fl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.||...+ .-+.++|-. ..++|.||...|||+-.|.
T Consensus 392 ------~ghsd~~----yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 392 ------MGHSDEV----YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred ------cccccce----eeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 5676544 445899988 4599999999999997653
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=5.3e-10 Score=133.09 Aligned_cols=195 Identities=21% Similarity=0.236 Sum_probs=140.0
Q ss_pred CEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceee
Q 000055 2284 HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI 2362 (2548)
Q Consensus 2284 ~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl 2362 (2548)
..+|++-.+|+|++||..+++.... .+..+++.+.|.+.+. .++.+.+|+ .||+|++||+|......+...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~-----fk~~~~~~N~vrf~~~ds~h~v~s~s---sDG~Vr~wD~Rs~~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE-----FKGPPATTNGVRFISCDSPHGVISCS---SDGTVRLWDIRSQAESARISW 112 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe-----ecCCCCcccceEEecCCCCCeeEEec---cCCeEEEEEeecchhhhheec
Confidence 5688999999999999999764432 1224455566666655 456777775 899999999998656667777
Q ss_pred eccC-CCeEEEEEccCCCCCCCCCCEEEEEe----CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc
Q 000055 2363 TCHE-GGARSISVFDNDLGSGSVSPLIVTGG----KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS 2437 (2548)
Q Consensus 2363 ~gHs-~~VtSLafsP~dlg~gs~g~lLVSGS----~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v 2437 (2548)
..|. .+..+++..-. ..++++|. .|-.|.+||+|.-+ +.++.+
T Consensus 113 ~~~~~~~f~~ld~nck-------~~ii~~GtE~~~s~A~v~lwDvR~~q--q~l~~~----------------------- 160 (376)
T KOG1188|consen 113 TQQSGTPFICLDLNCK-------KNIIACGTELTRSDASVVLWDVRSEQ--QLLRQL----------------------- 160 (376)
T ss_pred cCCCCCcceEeeccCc-------CCeEEeccccccCceEEEEEEecccc--chhhhh-----------------------
Confidence 7777 45566664433 55777775 57889999988411 112222
Q ss_pred cCCCCCceEEEcccCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeec
Q 000055 2438 KPGDQNGMLWYIPKAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAG 2516 (2548)
Q Consensus 2438 ~s~D~sv~Iwdi~~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~ 2516 (2548)
...|...|+++.|+| +.++|+|||.||.|.++|+..-..-..+ -+ ..+|+ +.
T Consensus 161 ------------~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL-----~~------viN~~----sS 213 (376)
T KOG1188|consen 161 ------------NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL-----LH------VINHG----SS 213 (376)
T ss_pred ------------hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhH-----HH------hhccc----ce
Confidence 266999999999999 5689999999999999999743221111 11 13444 44
Q ss_pred EEEEEEcCCe---EEEEECCCcEEEEECCCCc
Q 000055 2517 VTDIQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2517 VtsLafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
|..+.|..++ |.+-+.+++..+|+++.+.
T Consensus 214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred eeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 6788999988 8889999999999998763
No 192
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.15 E-value=5.9e-10 Score=137.21 Aligned_cols=137 Identities=19% Similarity=0.206 Sum_probs=101.7
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccC
Q 000055 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPM 2311 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~ 2311 (2548)
..++.++.||.+.|-+- .++....+ ..|.+.|.+-+|+|||.-|+|++.||.|++|.-...-+.
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv----------~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRS----- 139 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSI----------SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRS----- 139 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhh----------hhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHH-----
Confidence 45777888998888763 23322222 236699999999999999999999999999986532111
Q ss_pred ccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE
Q 000055 2312 ESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV 2389 (2548)
Q Consensus 2312 ~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV 2389 (2548)
+.......|. +|.|+.+.++.+ ..+.+.|=-+.. ...+...++|.+-|.++.|++. +++++
T Consensus 140 ----tl~Q~~~~v~c~~W~p~S~~vl~c----~g~h~~IKpL~~--n~k~i~WkAHDGiiL~~~W~~~-------s~lI~ 202 (737)
T KOG1524|consen 140 ----TVVQNEESIRCARWAPNSNSIVFC----QGGHISIKPLAA--NSKIIRWRAHDGLVLSLSWSTQ-------SNIIA 202 (737)
T ss_pred ----HHhhcCceeEEEEECCCCCceEEe----cCCeEEEeeccc--ccceeEEeccCcEEEEeecCcc-------cccee
Confidence 1222334454 488887766665 456777766654 3456677899999999999998 78999
Q ss_pred EEeCCCcEEEEe
Q 000055 2390 TGGKGGDVGIHD 2401 (2548)
Q Consensus 2390 SGS~DGtVrLWD 2401 (2548)
+||.|-..++||
T Consensus 203 sgGED~kfKvWD 214 (737)
T KOG1524|consen 203 SGGEDFRFKIWD 214 (737)
T ss_pred ecCCceeEEeec
Confidence 999999999999
No 193
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.13 E-value=1.3e-10 Score=141.83 Aligned_cols=226 Identities=17% Similarity=0.213 Sum_probs=178.9
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000055 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
..+.|+.+|+.++.|+..|.|..+|+.++.....+.. ...|.++.|-.+..++|++ ....+.|||-..
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-----------~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G 200 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-----------METVRDVTFLHNEQFFAVA-QKKYVYVYDNNG 200 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeeh-----------hhhhhhhhhhcchHHHHhh-hhceEEEecCCC
Confidence 5678889999999999999999999999988877743 3679999999888877765 457888998653
Q ss_pred CcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000055 2303 GGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
- ...|+..|. .|. .|-|..-++++++ ..|.++.-|+.+ ++.+..+..-.+.+..+.-+|-
T Consensus 201 t---------ElHClk~~~-~v~rLeFLPyHfLL~~~~---~~G~L~Y~DVS~--GklVa~~~t~~G~~~vm~qNP~--- 262 (545)
T KOG1272|consen 201 T---------ELHCLKRHI-RVARLEFLPYHFLLVAAS---EAGFLKYQDVST--GKLVASIRTGAGRTDVMKQNPY--- 262 (545)
T ss_pred c---------EEeehhhcC-chhhhcccchhheeeecc---cCCceEEEeech--hhhhHHHHccCCccchhhcCCc---
Confidence 2 123444443 333 2667777777775 889999999987 7888888888889999998888
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000055 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
+..+-+|..+|+|.+|. ..+.+.+..+ ..|.++|.+|
T Consensus 263 ----NaVih~GhsnGtVSlWS---P~skePLvKi------------------------------------LcH~g~V~si 299 (545)
T KOG1272|consen 263 ----NAVIHLGHSNGTVSLWS---PNSKEPLVKI------------------------------------LCHRGPVSSI 299 (545)
T ss_pred ----cceEEEcCCCceEEecC---CCCcchHHHH------------------------------------HhcCCCcceE
Confidence 56889999999999999 4444444333 5699999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEECCCcEEEEE
Q 000055 2461 STVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWD 2540 (2548)
+++++|+|++|.|.|..++|||++....+.++. .-| ....+++|..|++++|....|.||.
T Consensus 300 Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~-------------tp~------~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 300 AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR-------------TPH------PASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred EECCCCcEEeecccccceeEeeeccccccceee-------------cCC------CccccccccccceeeecCCeeeeeh
Confidence 999999999999999999999999877666552 111 1345689999977777878899996
No 194
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.12 E-value=1.7e-09 Score=126.21 Aligned_cols=208 Identities=19% Similarity=0.259 Sum_probs=143.2
Q ss_pred EEEEEEcCCC-----CEEEEEECCCeEEEEEcCCCceeEEEe-ccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCc
Q 000055 2222 TRAFSSHPLR-----PFFLVGSSNTHIYLWEFGKDKATATYG-VLPAANVPPPYALASISALQFDH-YGHRFASAALDGT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG-----~~LASGS~DGsVrLWDl~tg~~l~t~~-~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGt 2294 (2548)
+..+.|.|+. ++|||.+ ..+|+|.+...+...... .+..+ +...+.+++++..|+. +.+++.+++-|-+
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~--kns~~~aPlTSFDWne~dp~~igtSSiDTT 174 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNN--KNSEFCAPLTSFDWNEVDPNLIGTSSIDTT 174 (364)
T ss_pred ccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccC--cccccCCcccccccccCCcceeEeecccCe
Confidence 4566677765 2455433 469999998532222111 11111 2334557999999998 7889999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEE--EcCCC-CEEEEEeccCCCCeEEEEECCCCCCCc-ceeeeccCCCeE
Q 000055 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSS-RASITCHEGGAR 2370 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~-v~sl~gHs~~Vt 2370 (2548)
..|||++++....++ ..+-.|...|.. |...+ +.||++| .||.|+++|++.-.... +..-.....+..
T Consensus 175 CTiWdie~~~~~~vk-----TQLIAHDKEV~DIaf~~~s~~~FASvg---aDGSvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVK-----TQLIAHDKEVYDIAFLKGSRDVFASVG---ADGSVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred EEEEEEeecccccee-----eEEEecCcceeEEEeccCccceEEEec---CCCcEEEEEecccccceEEecCCCCCCcce
Confidence 999999987321111 125678877763 55443 5888887 89999999998632211 111112246778
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCC-CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc
Q 000055 2371 SISVFDNDLGSGSVSPLIVTGGKG-GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~D-GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi 2449 (2548)
.++|++.+ .+++++-..| ..|.|.|+|... ..+..+
T Consensus 247 RLswnkqD------pnymATf~~dS~~V~iLDiR~P~--tpva~L----------------------------------- 283 (364)
T KOG0290|consen 247 RLSWNKQD------PNYMATFAMDSNKVVILDIRVPC--TPVARL----------------------------------- 283 (364)
T ss_pred eeccCcCC------chHHhhhhcCCceEEEEEecCCC--cceehh-----------------------------------
Confidence 89999886 6788886655 479999988522 222222
Q ss_pred ccCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCC
Q 000055 2450 PKAHLGSVTRISTVPN-TSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2450 ~~gH~~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~T 2485 (2548)
++|.+.|++++|.|. ...++|+|.|..+-+||+.+
T Consensus 284 -~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 284 -RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred -hcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 789999999999995 57999999999999999975
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.10 E-value=1.1e-09 Score=136.56 Aligned_cols=234 Identities=14% Similarity=0.197 Sum_probs=165.8
Q ss_pred CccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000055 2215 ATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.++.+|. |.|++|+.+|+.+|+|+.|..|.+|+-.... +-.| .|.+.|.||.|+|-.+.+++|+-.
T Consensus 47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-----------SH~D~IQCMsFNP~~h~LasCsLs 114 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-----------SHNDAIQCMSFNPITHQLASCSLS 114 (1081)
T ss_pred cccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-----------ccCCeeeEeecCchHHHhhhcchh
Confidence 4555555 8999999999999999999999999954322 2222 267999999999999999999864
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000055 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
..-+|..+...... . ....++. +|..||++++.|- .||+|.|-+-.....-.+..--|.+++|+
T Consensus 115 -dFglWS~~qK~V~K---------~-kss~R~~~CsWtnDGqylalG~---~nGTIsiRNk~gEek~~I~Rpgg~Nspiw 180 (1081)
T KOG1538|consen 115 -DFGLWSPEQKSVSK---------H-KSSSRIICCSWTNDGQYLALGM---FNGTISIRNKNGEEKVKIERPGGSNSPIW 180 (1081)
T ss_pred -hccccChhhhhHHh---------h-hhheeEEEeeecCCCcEEEEec---cCceEEeecCCCCcceEEeCCCCCCCCce
Confidence 34578765432111 1 1122333 4889999999985 79999988654311112233335778999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEE
Q 000055 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWY 2448 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwd 2448 (2548)
+++|+|.. |.|. ...+++.....++.++.+. |+.+..- ..-.....++.+-++|.+ +++.++...++.
T Consensus 181 si~~~p~s-g~G~-~di~aV~DW~qTLSFy~Ls----G~~Igk~----r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 181 SICWNPSS-GEGR-NDILAVADWGQTLSFYQLS----GKQIGKD----RALNFDPCCISYFTNGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred EEEecCCC-CCCc-cceEEEEeccceeEEEEec----ceeeccc----ccCCCCchhheeccCCcEEEEccCCCceEEEe
Confidence 99999984 3322 4477777888888888753 3333211 111234567788899998 788888777774
Q ss_pred -------cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000055 2449 -------IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2449 -------i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
+.-..+.+|+.++..|++++++.|+.||+|..|++-
T Consensus 251 R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 251 RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 222367799999999999999999999999998864
No 196
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2.9e-09 Score=133.08 Aligned_cols=200 Identities=14% Similarity=0.180 Sum_probs=149.4
Q ss_pred EEEEEEcCCCCEEEEEE---CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000055 2222 TRAFSSHPLRPFFLVGS---SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS---~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
+..+.||..|.||++.. ....|.|.++........|+. ..+.|.++.|+|...+|++++. ..|++|
T Consensus 524 i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k----------skG~vq~v~FHPs~p~lfVaTq-~~vRiY 592 (733)
T KOG0650|consen 524 IRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK----------SKGLVQRVKFHPSKPYLFVATQ-RSVRIY 592 (733)
T ss_pred cceeeeecCCceEEEeccCCCcceEEEEecccccccCchhh----------cCCceeEEEecCCCceEEEEec-cceEEE
Confidence 68899999999999864 345788999887655544422 2377999999999999988875 689999
Q ss_pred EcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
|+.....+.. +......|. +++|.|..++.++ .|+.+..+|+... .++.+.+.-|...+++|+|++
T Consensus 593 dL~kqelvKk--------L~tg~kwiS~msihp~GDnli~gs---~d~k~~WfDldls-skPyk~lr~H~~avr~Va~H~ 660 (733)
T KOG0650|consen 593 DLSKQELVKK--------LLTGSKWISSMSIHPNGDNLILGS---YDKKMCWFDLDLS-SKPYKTLRLHEKAVRSVAFHK 660 (733)
T ss_pred ehhHHHHHHH--------HhcCCeeeeeeeecCCCCeEEEec---CCCeeEEEEcccC-cchhHHhhhhhhhhhhhhhcc
Confidence 9976432221 222222333 4788998888875 8999999999863 678899999999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCC
Q 000055 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS 2456 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~ 2456 (2548)
. -+++++|+.||++.|+--+. ...+ ..+.-+.-...+.+|...
T Consensus 661 r-------yPLfas~sdDgtv~Vfhg~V------Y~Dl------------------------~qnpliVPlK~L~gH~~~ 703 (733)
T KOG0650|consen 661 R-------YPLFASGSDDGTVIVFHGMV------YNDL------------------------LQNPLIVPLKRLRGHEKT 703 (733)
T ss_pred c-------cceeeeecCCCcEEEEeeee------ehhh------------------------hcCCceEeeeeccCceee
Confidence 8 68999999999999997321 1000 000011122334677554
Q ss_pred ----EEEEEEeCCCCEEEEEeCCCcEEEE
Q 000055 2457 ----VTRISTVPNTSLFLTGSKDGDVKLW 2481 (2548)
Q Consensus 2457 ----VtsLafSPdG~~LaSGS~DGtIrIW 2481 (2548)
|..+.|||...+|++++.||+|++|
T Consensus 704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 704 NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccceEeecccCCCceEEecCCCceEEee
Confidence 8999999999999999999999998
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=9.2e-09 Score=125.88 Aligned_cols=186 Identities=16% Similarity=0.182 Sum_probs=138.5
Q ss_pred cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeC
Q 000055 2323 DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2323 ~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDL 2402 (2548)
.+.+++.+|..++++| .||++|||+.-. ...+.....|.+.|.++.|+|+ +.+|++-+.| ..+|||
T Consensus 148 k~vaf~~~gs~latgg---~dg~lRv~~~Ps--~~t~l~e~~~~~eV~DL~FS~d-------gk~lasig~d-~~~VW~- 213 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG---TDGTLRVWEWPS--MLTILEEIAHHAEVKDLDFSPD-------GKFLASIGAD-SARVWS- 213 (398)
T ss_pred eEEEEcCCCCEeeecc---ccceEEEEecCc--chhhhhhHhhcCccccceeCCC-------CcEEEEecCC-ceEEEE-
Confidence 5667999999999998 899999999632 4566777789999999999999 8899999999 999999
Q ss_pred CccccCceeeeecCCCCCCCccccccccCCCC---CC----ccCCCCCceEEEcccC-------------CCCCEEEEEE
Q 000055 2403 RYIATGKTKKHKHSDRGGSSINTCAHADAQTG---SG----SKPGDQNGMLWYIPKA-------------HLGSVTRIST 2462 (2548)
Q Consensus 2403 R~l~TGk~l~tl~~~~~~s~~~~~~vafSpdG---k~----v~s~D~sv~Iwdi~~g-------------H~~~VtsLaf 2462 (2548)
..+|.++.... + .........+-|+.|+ .+ .....+.++.+++..- -...|++++.
T Consensus 214 --~~~g~~~a~~t-~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 214 --VNTGAALARKT-P-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred --eccCchhhhcC-C-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 55665555531 1 1222223334444444 11 2222233344443211 2348999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEE
Q 000055 2463 VPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2463 SPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
+++|++++.|+.||.|-|++..+-+.++.++ +.|.. .|+.+.|+|+. +++.+.|..+.+..
T Consensus 290 S~dGkf~AlGT~dGsVai~~~~~lq~~~~vk-------------~aH~~----~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 290 SDDGKFLALGTMDGSVAIYDAKSLQRLQYVK-------------EAHLG----FVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred cCCCcEEEEeccCCcEEEEEeceeeeeEeeh-------------hhhee----eeeeEEEcCCcCcccccccCCceeEEE
Confidence 9999999999999999999999999998775 45553 47888999998 88889999888887
Q ss_pred CCC
Q 000055 2541 LED 2543 (2548)
Q Consensus 2541 L~s 2543 (2548)
+.-
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 754
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=2.4e-09 Score=122.42 Aligned_cols=214 Identities=15% Similarity=0.194 Sum_probs=148.4
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccccc--CccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEE
Q 000055 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP--MESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p--~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
..|.+-+|+|.+++|+.|..+|+|.+..+..-......+ ......+++|..++..+-....++++|| ||.|+-|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g----dG~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG----DGLVYGW 86 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeecc----CceEEEe
Confidence 457777899999999999999999999986431111111 1122345789998886443457788875 7999999
Q ss_pred ECCCCCC----Ccc--eeeeccC-----CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC
Q 000055 2350 DTLAPPT----SSR--ASITCHE-----GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR 2418 (2548)
Q Consensus 2350 Dl~t~~~----k~v--~sl~gHs-----~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~ 2418 (2548)
..+.... +.. ....-|. ..|+++...|. .+-++.++.|+.++-|| +.+|+..+.+
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~-------enSi~~AgGD~~~y~~d---lE~G~i~r~~---- 152 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS-------ENSILFAGGDGVIYQVD---LEDGRIQREY---- 152 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccC-------CCcEEEecCCeEEEEEE---ecCCEEEEEE----
Confidence 8653111 111 1111222 36888988888 34555556899999999 7778877776
Q ss_pred CCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccc
Q 000055 2419 GGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHER 2498 (2548)
Q Consensus 2419 ~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~ 2498 (2548)
+||++.|.+++--.....+++|++||++||||.++++.+..+......
T Consensus 153 --------------------------------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~ 200 (325)
T KOG0649|consen 153 --------------------------------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP 200 (325)
T ss_pred --------------------------------cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh
Confidence 899999999998666677889999999999999999999988421111
Q ss_pred cccccCcccCCCCceeecEEEEEEcCCeEEEEECCCcEEEEECCCC
Q 000055 2499 HTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2499 hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWDL~sg 2544 (2548)
. .++.|-+ ..|.+++.+.+-+++|+ ...+.+|.++..
T Consensus 201 -~----~lRp~~g---~wigala~~edWlvCGg-Gp~lslwhLrss 237 (325)
T KOG0649|consen 201 -N----LLRPDWG---KWIGALAVNEDWLVCGG-GPKLSLWHLRSS 237 (325)
T ss_pred -h----hcCcccC---ceeEEEeccCceEEecC-CCceeEEeccCC
Confidence 1 1344443 23456677666566554 467899999764
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.08 E-value=1.3e-08 Score=122.71 Aligned_cols=233 Identities=14% Similarity=0.193 Sum_probs=155.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC--CcEEEEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD--GTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D--GtVrVWD 2299 (2548)
+..+.|+.+...|..|+.|| -++|+.......... ......|--+-|+ ..++|..+.+ +.+++.+
T Consensus 8 i~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~----------~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~ 74 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSK----------DTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVH 74 (391)
T ss_pred eeeeeeccceeEEEccCCCc-eeEEecCchHHhhcc----------cCCCeEEEEeecc--cceeEEEecCCCceEEEEE
Confidence 35566888888899999998 467776643321110 0011346666666 3445544444 3578887
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee---ccCCCeEEEEEcc
Q 000055 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT---CHEGGARSISVFD 2376 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~---gHs~~VtSLafsP 2376 (2548)
...+..+ |---....|.++.-+-+.++++ -...|+|||++. .+.++++. .+..++.++..++
T Consensus 75 ~Kk~~~I---------Ce~~fpt~IL~VrmNr~RLvV~----Lee~IyIydI~~--MklLhTI~t~~~n~~gl~AlS~n~ 139 (391)
T KOG2110|consen 75 FKKKTTI---------CEIFFPTSILAVRMNRKRLVVC----LEESIYIYDIKD--MKLLHTIETTPPNPKGLCALSPNN 139 (391)
T ss_pred cccCceE---------EEEecCCceEEEEEccceEEEE----EcccEEEEeccc--ceeehhhhccCCCccceEeeccCC
Confidence 7644311 1111223444433344556665 345699999986 56666655 3455566666555
Q ss_pred CCCCCCCCCCEEEEEe--CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000055 2377 NDLGSGSVSPLIVTGG--KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS--~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
. +.+++--+ ..|.|.+||+- +-+.+..+ .+|+
T Consensus 140 ~-------n~ylAyp~s~t~GdV~l~d~~---nl~~v~~I------------------------------------~aH~ 173 (391)
T KOG2110|consen 140 A-------NCYLAYPGSTTSGDVVLFDTI---NLQPVNTI------------------------------------NAHK 173 (391)
T ss_pred C-------CceEEecCCCCCceEEEEEcc---cceeeeEE------------------------------------EecC
Confidence 5 34666433 46899999943 33443343 6799
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCc-EEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEE
Q 000055 2455 GSVTRISTVPNTSLFLTGSKDGD-VKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCG 2531 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~DGt-IrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS 2531 (2548)
+.+-+++|+|+|.+|||+|+.|+ |||+.+.+|+.+++|. ||-. .+.|.+++|+|++ |++.|
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR-------------RG~~---~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR-------------RGTY---PVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee-------------CCce---eeEEEEEEECCCCCeEEEec
Confidence 99999999999999999999996 7999999999999882 3322 3568999999999 66778
Q ss_pred CCCcEEEEECCCC
Q 000055 2532 GDGSVKLIQLEDY 2544 (2548)
Q Consensus 2532 ~DGtIrIWDL~sg 2544 (2548)
..++|.+|+++.-
T Consensus 238 ~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 238 NTETVHIFKLEKV 250 (391)
T ss_pred CCCeEEEEEeccc
Confidence 8899999999753
No 200
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.07 E-value=7.2e-10 Score=134.20 Aligned_cols=172 Identities=17% Similarity=0.272 Sum_probs=137.1
Q ss_pred CCeEEEEEccCCC-EEEEEeCCCcEEEEEcCCCccccc-ccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEE
Q 000055 2272 ASISALQFDHYGH-RFASAALDGTVCTWQLEVGGRSNV-RPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~-~LaSGS~DGtVrVWDl~tgk~i~i-~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVr 2347 (2548)
.+|.++.|.+++. +++||+.|..|++|.++.+....- ........+..|...|.+ |+|+|.++|+|+ ++|.|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~---D~g~v~ 90 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG---DGGEVF 90 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC---CCceEE
Confidence 6899999998755 999999999999999976532210 122334457788888764 999999999997 899999
Q ss_pred EEECC--------C------CCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeee
Q 000055 2348 VWDTL--------A------PPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKH 2413 (2548)
Q Consensus 2348 IWDl~--------t------~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~t 2413 (2548)
+|-.. + ........+.+|...|..++|+|+ +..+++|+.|.++++|| ...|.....
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-------~~~l~s~s~dns~~l~D---v~~G~l~~~ 160 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD-------SNFLVSGSVDNSVRLWD---VHAGQLLAI 160 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC-------CceeeeeeccceEEEEE---eccceeEee
Confidence 99865 1 001123556689999999999999 78999999999999999 455666655
Q ss_pred ecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000055 2414 KHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2414 l~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
+ .+|...|..++|+|-++++++-+.|...+++++...+.++..
T Consensus 161 ~------------------------------------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~ 203 (434)
T KOG1009|consen 161 L------------------------------------DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRH 203 (434)
T ss_pred c------------------------------------cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeee
Confidence 5 779999999999999999999999998888888766655544
No 201
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.05 E-value=3.2e-10 Score=138.52 Aligned_cols=228 Identities=18% Similarity=0.206 Sum_probs=170.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|..+.|-.+..++|++ +...++||| ..|..+++++. ...|..+.|-|..-+|++++..|.++.-|+.
T Consensus 173 v~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk~-----------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS 239 (545)
T KOG1272|consen 173 VRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLKR-----------HIRVARLEFLPYHFLLVAASEAGFLKYQDVS 239 (545)
T ss_pred hhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehhh-----------cCchhhhcccchhheeeecccCCceEEEeec
Confidence 4667776677777664 557899999 56777777754 2679999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
+|+.+... . ......++.+.+|-...+-+|. .+|+|.+|.... .+++..+.+|.++|.+|++.++
T Consensus 240 ~GklVa~~-----~-t~~G~~~vm~qNP~NaVih~Gh---snGtVSlWSP~s--kePLvKiLcH~g~V~siAv~~~---- 304 (545)
T KOG1272|consen 240 TGKLVASI-----R-TGAGRTDVMKQNPYNAVIHLGH---SNGTVSLWSPNS--KEPLVKILCHRGPVSSIAVDRG---- 304 (545)
T ss_pred hhhhhHHH-----H-ccCCccchhhcCCccceEEEcC---CCceEEecCCCC--cchHHHHHhcCCCcceEEECCC----
Confidence 99754321 1 1122235556788888888876 799999999976 6788888899999999999998
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc-cc---------
Q 000055 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI-PK--------- 2451 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi-~~--------- 2451 (2548)
|.+++|.|.|..|+|||+|+.. .+.+.. .......+++|+.|.+..+....+.||.- ..
T Consensus 305 ---G~YMaTtG~Dr~~kIWDlR~~~---ql~t~~-----tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pY 373 (545)
T KOG1272|consen 305 ---GRYMATTGLDRKVKIWDLRNFY---QLHTYR-----TPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPY 373 (545)
T ss_pred ---CcEEeecccccceeEeeecccc---ccceee-----cCCCccccccccccceeeecCCeeeeehhhhcCCCCCCcch
Confidence 8999999999999999998643 222221 12234556788888888888888899952 11
Q ss_pred -CC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcE
Q 000055 2452 -AH--LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQL 2488 (2548)
Q Consensus 2452 -gH--~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgel 2488 (2548)
.| .+.|..+.|.|-.+.|-.|-..|.-.+-=...|++
T Consensus 374 m~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGeP 413 (545)
T KOG1272|consen 374 MNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEP 413 (545)
T ss_pred hhhccCcccccceeccHHHeeeccccCCceeEeccCCCCC
Confidence 12 45899999999888888777766555443344443
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=7.3e-09 Score=133.98 Aligned_cols=212 Identities=15% Similarity=0.149 Sum_probs=139.0
Q ss_pred CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---CcEEEEEcCCCcccccccCcccee
Q 000055 2240 NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---GTVCTWQLEVGGRSNVRPMESCLC 2316 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---GtVrVWDl~tgk~i~i~p~~s~~t 2316 (2548)
+..|.+||.+... ...+. .|...+.+.+|+|||+.++.++.+ ..|.+||+.+++...+ ..
T Consensus 183 ~~~i~i~d~dg~~-~~~lt----------~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l------~~ 245 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVN----------RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV------AS 245 (429)
T ss_pred eEEEEEECCCCCC-ceEec----------cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE------ec
Confidence 5789999987554 23321 133679999999999999988654 3799999987753221 12
Q ss_pred ccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE-EEeCCC
Q 000055 2317 FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV-TGGKGG 2395 (2548)
Q Consensus 2317 ~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV-SGS~DG 2395 (2548)
+.++... ..|+|||+.|+.+. +.+|.+.||.+... ......+..+...+....|+|+ ++.|+ ++..+|
T Consensus 246 ~~g~~~~-~~wSPDG~~La~~~--~~~g~~~Iy~~d~~-~~~~~~lt~~~~~~~~~~wSpD-------G~~i~f~s~~~g 314 (429)
T PRK01742 246 FRGHNGA-PAFSPDGSRLAFAS--SKDGVLNIYVMGAN-GGTPSQLTSGAGNNTEPSWSPD-------GQSILFTSDRSG 314 (429)
T ss_pred CCCccCc-eeECCCCCEEEEEE--ecCCcEEEEEEECC-CCCeEeeccCCCCcCCEEECCC-------CCEEEEEECCCC
Confidence 3444433 35999999888864 35777666644322 2334556667777889999999 56555 445688
Q ss_pred cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC
Q 000055 2396 DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD 2475 (2548)
Q Consensus 2396 tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D 2475 (2548)
..+||++.. ..+.. ..+ .+.+ ...+|+|+|++|+.++.+
T Consensus 315 ~~~I~~~~~-~~~~~-~~l-------------------------------------~~~~--~~~~~SpDG~~ia~~~~~ 353 (429)
T PRK01742 315 SPQVYRMSA-SGGGA-SLV-------------------------------------GGRG--YSAQISADGKTLVMINGD 353 (429)
T ss_pred CceEEEEEC-CCCCe-EEe-------------------------------------cCCC--CCccCCCCCCEEEEEcCC
Confidence 999998541 11111 110 1222 346799999999888776
Q ss_pred CcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEEC
Q 000055 2476 GDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2476 GtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
+ +.+||+.+++..... .++. ..++.|+|+| |++++.+|.+++|.+
T Consensus 354 ~-i~~~Dl~~g~~~~lt--------------~~~~------~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 354 N-VVKQDLTSGSTEVLS--------------STFL------DESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred C-EEEEECCCCCeEEec--------------CCCC------CCCceECCCCCEEEEEEcCCCceEEEE
Confidence 5 555999988764311 1111 1234799999 888888998888875
No 203
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.04 E-value=2.2e-08 Score=130.89 Aligned_cols=207 Identities=14% Similarity=0.126 Sum_probs=139.0
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEecc--CCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCcccc
Q 000055 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVL--PAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l--~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
+.-+++++.||.|..|+++.-......... ..|......-...+++++|.+ +...|+.|+.+|.|..-.........
T Consensus 305 ~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~ 384 (555)
T KOG1587|consen 305 NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP 384 (555)
T ss_pred CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc
Confidence 355889999999999988753321111100 010001112235799999998 57789999999998773332221111
Q ss_pred cccCccceeccCCcccEEE--EcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCC
Q 000055 2308 VRPMESCLCFSSHAMDVSY--ITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSV 2384 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~a--fSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~ 2384 (2548)
...++....+..|.+.|.+ ++|-+. ++.++ .|-+|+||.... ...++..+..+...|++++|+|..
T Consensus 385 ~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~----gDW~vriWs~~~-~~~Pl~~~~~~~~~v~~vaWSptr------ 453 (555)
T KOG1587|consen 385 EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV----GDWTVRIWSEDV-IASPLLSLDSSPDYVTDVAWSPTR------ 453 (555)
T ss_pred cccccccccccccCcceEeeecCCCccceeeee----ccceeEeccccC-CCCcchhhhhccceeeeeEEcCcC------
Confidence 0111222345667777775 566554 55555 489999999873 256777788888889999999996
Q ss_pred CCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC
Q 000055 2385 SPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP 2464 (2548)
Q Consensus 2385 g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP 2464 (2548)
..+++++..||.|.+||++. .....+... ..+....+.+.|++
T Consensus 454 pavF~~~d~~G~l~iWDLl~-~~~~Pv~s~------------------------------------~~~~~~l~~~~~s~ 496 (555)
T KOG1587|consen 454 PAVFATVDGDGNLDIWDLLQ-DDEEPVLSQ------------------------------------KVCSPALTRVRWSP 496 (555)
T ss_pred ceEEEEEcCCCceehhhhhc-cccCCcccc------------------------------------cccccccceeecCC
Confidence 67999999999999999863 222222221 12345667888999
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 000055 2465 NTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~T 2485 (2548)
.|+.|++|...|++++|++..
T Consensus 497 ~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 497 NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCcEEEEecCCCcEEEEEcCc
Confidence 999999999999999999963
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.04 E-value=7.6e-08 Score=116.23 Aligned_cols=204 Identities=13% Similarity=0.201 Sum_probs=153.5
Q ss_pred ccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 000055 2216 TVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTV 2295 (2548)
Q Consensus 2216 tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtV 2295 (2548)
..+++.+..+-|+.+---++...+-..+++.++.++..+..+.- ...|.+|+++ -++|+++=.+ .|
T Consensus 43 ~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f-----------pt~IL~VrmN--r~RLvV~Lee-~I 108 (391)
T KOG2110|consen 43 DTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFF-----------PTSILAVRMN--RKRLVVCLEE-SI 108 (391)
T ss_pred cCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEec-----------CCceEEEEEc--cceEEEEEcc-cE
Confidence 45677788888876543333333334689999988877766531 2679999997 4456666554 49
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000055 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
.|||+++.+.+. +..+...+...+++++++ +.++|.-+. ...|.|.+||+.+ .+++..+.+|.+.+.+++
T Consensus 109 yIydI~~MklLh-----TI~t~~~n~~gl~AlS~n~~n~ylAyp~s-~t~GdV~l~d~~n--l~~v~~I~aH~~~lAala 180 (391)
T KOG2110|consen 109 YIYDIKDMKLLH-----TIETTPPNPKGLCALSPNNANCYLAYPGS-TTSGDVVLFDTIN--LQPVNTINAHKGPLAALA 180 (391)
T ss_pred EEEecccceeeh-----hhhccCCCccceEeeccCCCCceEEecCC-CCCceEEEEEccc--ceeeeEEEecCCceeEEE
Confidence 999999875443 233355667778876654 458887652 3679999999976 678889999999999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCc-EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000055 2374 VFDNDLGSGSVSPLIVTGGKGGD-VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGt-VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
|+++ |.+|+|++..|+ |||++ ..+|+.+..++ .|
T Consensus 181 fs~~-------G~llATASeKGTVIRVf~---v~~G~kl~eFR-----------------------------------RG 215 (391)
T KOG2110|consen 181 FSPD-------GTLLATASEKGTVIRVFS---VPEGQKLYEFR-----------------------------------RG 215 (391)
T ss_pred ECCC-------CCEEEEeccCceEEEEEE---cCCccEeeeee-----------------------------------CC
Confidence 9999 899999999996 58999 66788777762 11
Q ss_pred -CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000055 2453 -HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2453 -H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
--..|.+++|+|++++|++.|..++|+||.+.+.
T Consensus 216 ~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 216 TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred ceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 1246889999999999999999999999988743
No 205
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.01 E-value=6.9e-08 Score=120.29 Aligned_cols=242 Identities=10% Similarity=0.097 Sum_probs=149.6
Q ss_pred EEEEEcCCCCEEEEE-ECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CCcEEEEE
Q 000055 2223 RAFSSHPLRPFFLVG-SSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTWQ 2299 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASG-S~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DGtVrVWD 2299 (2548)
..++++|++++|+++ ..++.|.+|+++. +.. ......+ ..+....++|+|+++++++++. ++.|.+|+
T Consensus 38 ~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~~--------~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~ 108 (330)
T PRK11028 38 QPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAESP--------LPGSPTHISTDHQGRFLFSASYNANCVSVSP 108 (330)
T ss_pred ccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeeec--------CCCCceEEEECCCCCEEEEEEcCCCeEEEEE
Confidence 567888999988765 4588899999973 332 2221111 1134678999999999888764 78999999
Q ss_pred cCCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc----eeee-ccCCCeEEEE
Q 000055 2300 LEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR----ASIT-CHEGGARSIS 2373 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v----~sl~-gHs~~VtSLa 2373 (2548)
+++..... . ......+... .-..++|+|+++++++ ..++.|.+||+... +... .... ........+.
T Consensus 109 ~~~~g~~~-~---~~~~~~~~~~~~~~~~~p~g~~l~v~~--~~~~~v~v~d~~~~-g~l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 109 LDKDGIPV-A---PIQIIEGLEGCHSANIDPDNRTLWVPC--LKEDRIRLFTLSDD-GHLVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred ECCCCCCC-C---ceeeccCCCcccEeEeCCCCCEEEEee--CCCCEEEEEEECCC-CcccccCCCceecCCCCCCceEE
Confidence 97432111 0 1111222111 1124899999988776 46899999999752 2211 1111 1234567899
Q ss_pred EccCCCCCCCCCCEEEEEeC-CCcEEEEeCCccccCc--eeeeecCC-C-CCCCccccccccCCCCCC--cc-CCCCCce
Q 000055 2374 VFDNDLGSGSVSPLIVTGGK-GGDVGIHDFRYIATGK--TKKHKHSD-R-GGSSINTCAHADAQTGSG--SK-PGDQNGM 2445 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~-DGtVrLWDLR~l~TGk--~l~tl~~~-~-~~s~~~~~~vafSpdGk~--v~-s~D~sv~ 2445 (2548)
|+|+ +++++++.. +++|.+||+.. .+++ .+..+... . .........+.++|+|++ ++ ..++.+.
T Consensus 182 ~~pd-------g~~lyv~~~~~~~v~v~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~ 253 (330)
T PRK11028 182 FHPN-------QQYAYCVNELNSSVDVWQLKD-PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLIS 253 (330)
T ss_pred ECCC-------CCEEEEEecCCCEEEEEEEeC-CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEE
Confidence 9998 677766654 99999999641 1222 22222110 0 011111224678999997 33 3356788
Q ss_pred EEEccc--------CCC---CCEEEEEEeCCCCEEEEEeC-CCcEEEEECC--CCcE
Q 000055 2446 LWYIPK--------AHL---GSVTRISTVPNTSLFLTGSK-DGDVKLWDAK--AAQL 2488 (2548)
Q Consensus 2446 Iwdi~~--------gH~---~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~--Tgel 2488 (2548)
+|++.. +|. .....++++|+|++|++++. +++|.+|++. ++.+
T Consensus 254 v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 254 VFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 887632 111 13457899999999998876 8999999874 4444
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=1.3e-08 Score=131.70 Aligned_cols=196 Identities=16% Similarity=0.117 Sum_probs=127.3
Q ss_pred EEEEEEcCCCCEEEEEECC---CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcEEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSN---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D---GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtVrV 2297 (2548)
+...+|+|+|+.++.++.+ ..|++||+.+++... +.... +....++|+|||+.|+.++ .+|.+.+
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~----------g~~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFR----------GHNGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCC----------CccCceeECCCCCEEEEEEecCCcEEE
Confidence 5788999999999977543 479999998875432 22112 2234689999999888764 6887777
Q ss_pred EE--cCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000055 2298 WQ--LEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2298 WD--l~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
|. +.++... .+..+...+ ..|+|||+.++.++ ..++..+||++..... ....+ .+.+ ....
T Consensus 275 y~~d~~~~~~~---------~lt~~~~~~~~~~wSpDG~~i~f~s--~~~g~~~I~~~~~~~~-~~~~l-~~~~--~~~~ 339 (429)
T PRK01742 275 YVMGANGGTPS---------QLTSGAGNNTEPSWSPDGQSILFTS--DRSGSPQVYRMSASGG-GASLV-GGRG--YSAQ 339 (429)
T ss_pred EEEECCCCCeE---------eeccCCCCcCCEEECCCCCEEEEEE--CCCCCceEEEEECCCC-CeEEe-cCCC--CCcc
Confidence 64 4444311 122333222 35999999877664 3578889998764322 22222 3433 4577
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000055 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
|+|+ ++.|+.++.++ +.+||+ .+++..... ..+
T Consensus 340 ~SpD-------G~~ia~~~~~~-i~~~Dl---~~g~~~~lt------------------------------------~~~ 372 (429)
T PRK01742 340 ISAD-------GKTLVMINGDN-VVKQDL---TSGSTEVLS------------------------------------STF 372 (429)
T ss_pred CCCC-------CCEEEEEcCCC-EEEEEC---CCCCeEEec------------------------------------CCC
Confidence 8888 67888777765 555894 445432211 011
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECC--CCcEEEEe
Q 000055 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAK--AAQLVYHW 2492 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~--Tgell~tL 2492 (2548)
....+.|+|+|++|+.++.+|.+.+|++. +|+.+.++
T Consensus 373 --~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 373 --LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred --CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 12357799999999999999998888763 57776665
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.00 E-value=2.6e-08 Score=118.19 Aligned_cols=228 Identities=13% Similarity=0.092 Sum_probs=158.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.|.+|++|+..+|++.....|.||.............+.. |...|+.|+|+|..++|++|+.|..-.+|...
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~-------Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE-------HDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh-------hCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 68999999999999999999999999887664444443333 45899999999999999999999999999985
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCC--CcceeeeccCCCeEEEEEccC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPT--SSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~--k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
.+.. -.|... +..+.....+ |+|.++.||+|+ ..+.|.||=.+..+. -..+.-+.+.+.|+++.|+|+
T Consensus 86 ~~~~--Wkptlv---LlRiNrAAt~V~WsP~enkFAVgS---gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 86 SGGT--WKPTLV---LLRINRAATCVKWSPKENKFAVGS---GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred CCCe--ecccee---EEEeccceeeEeecCcCceEEecc---CccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 4432 122222 3333444433 899999999985 678888887764211 123344467889999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000055 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
+-++++|+.|+..|+|.. -++...... ...+.-..+.| | .+...+....+.|
T Consensus 158 -------nVLlaaGs~D~k~rVfSa-------yIK~Vdekp-ap~pWgsk~PF---G----------~lm~E~~~~ggwv 209 (361)
T KOG1523|consen 158 -------NVLLAAGSTDGKCRVFSA-------YIKGVDEKP-APTPWGSKMPF---G----------QLMSEASSSGGWV 209 (361)
T ss_pred -------cceecccccCcceeEEEE-------eeeccccCC-CCCCCccCCcH---H----------HHHHhhccCCCce
Confidence 568999999999999983 222221100 00000000000 0 1111112456799
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCc-EEEEe
Q 000055 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQ-LVYHW 2492 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tge-ll~tL 2492 (2548)
..+.|+|+|..|+-.+.|+++.+=|..... .+.++
T Consensus 210 h~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 210 HGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred eeeEeCCCCCEeeEecCCCceEEeecCCCchhccch
Confidence 999999999999999999999999987654 34433
No 208
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=3.5e-09 Score=130.92 Aligned_cols=227 Identities=15% Similarity=0.193 Sum_probs=148.9
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcC--CCCEEEEEeccCC
Q 000055 2267 PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS--SGSVIAAAGHSSN 2342 (2548)
Q Consensus 2267 ~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp--dGslLATgG~SS~ 2342 (2548)
..+|.+-|.+++|+.+|.+|++|+.|-.+.|||.-..+... ....||...|.+ |-| +.+++++|. .
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllh-------sI~TgHtaNIFsvKFvP~tnnriv~sgA---g 115 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLH-------SISTGHTANIFSVKFVPYTNNRIVLSGA---G 115 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceee-------eeecccccceeEEeeeccCCCeEEEecc---C
Confidence 34577999999999999999999999999999987544322 236789988875 444 344666654 8
Q ss_pred CCeEEEEECCCC--------CCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000055 2343 GINVVVWDTLAP--------PTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2343 DGtVrIWDl~t~--------~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
|..|+++|+... .....+.+.+|...|..++..|.. ...+.+++.||+|+-+|+|.....+.-..
T Consensus 116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~------PhtfwsasEDGtirQyDiREph~c~p~~~- 188 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG------PHTFWSASEDGTIRQYDIREPHVCNPDED- 188 (758)
T ss_pred cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC------CceEEEecCCcceeeecccCCccCCcccc-
Confidence 999999999741 123456677999999999998884 57999999999999999884211111000
Q ss_pred cCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCC--------
Q 000055 2415 HSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN-TSLFLTGSKDGDVKLWDAKA-------- 2485 (2548)
Q Consensus 2415 ~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~T-------- 2485 (2548)
+......+ ...--...|++.+|. ..+|+.|+.|--.++||.+.
T Consensus 189 --------~~~~l~ny--------------------~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~ 240 (758)
T KOG1310|consen 189 --------CPSILVNY--------------------NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSD 240 (758)
T ss_pred --------ccHHHHHh--------------------chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCC
Confidence 00000000 111235678999995 57899999999999999531
Q ss_pred Cc----------EEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCCc
Q 000055 2486 AQ----------LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2486 ge----------ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+. ++..|...|.+ ..+|.....-..++-+.|+|+| |++-+. -.|+++|+..+.
T Consensus 241 ~~~~~~pp~~~~cv~yf~p~hlk------n~~gn~~~~~~~~t~vtfnpNGtElLvs~~g-EhVYlfdvn~~~ 306 (758)
T KOG1310|consen 241 GTMNTCPPKDCRCVRYFSPGHLK------NSQGNLDRYITCCTYVTFNPNGTELLVSWGG-EHVYLFDVNEDK 306 (758)
T ss_pred ccccCCCCcccchhheecCcccc------CcccccccceeeeEEEEECCCCcEEEEeeCC-eEEEEEeecCCC
Confidence 11 12222111111 0122111111236778999999 455444 468899987653
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.98 E-value=7.4e-09 Score=122.71 Aligned_cols=215 Identities=15% Similarity=0.168 Sum_probs=158.6
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEE
Q 000055 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
++|+|.+|++|+..+|++..+..|.||.....+ +.+...++..|...|. +|+|..+.|++++ .|++-++|
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-----~w~~~htls~Hd~~vtgvdWap~snrIvtcs---~drnayVw 82 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS---HDRNAYVW 82 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCC-----CceeceehhhhCcceeEEeecCCCCceeEcc---CCCCcccc
Confidence 789999999999999999999999999987653 1223456778888776 4889999999986 89999999
Q ss_pred EC-CCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000055 2350 DT-LAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2350 Dl-~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
.. ..+..++...+..|+..+++|.|+|. ++.+++|+.-..|.||-+..-..-=.-+
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~-------enkFAVgSgar~isVcy~E~ENdWWVsK---------------- 139 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPK-------ENKFAVGSGARLISVCYYEQENDWWVSK---------------- 139 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCc-------CceEEeccCccEEEEEEEecccceehhh----------------
Confidence 98 44345567777889999999999999 7899999999999999853200000000
Q ss_pred ccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccc------ccccc
Q 000055 2429 ADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE------RHTFL 2502 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs------~hsfl 2502 (2548)
.+-+.+.+.|+++.|+|++-+|++||.|+..+|+..- ++.+...-+ +-+|-
T Consensus 140 -------------------hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay----IK~Vdekpap~pWgsk~PFG 196 (361)
T KOG1523|consen 140 -------------------HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY----IKGVDEKPAPTPWGSKMPFG 196 (361)
T ss_pred -------------------hhCCccccceeeeeccCCcceecccccCcceeEEEEe----eeccccCCCCCCCccCCcHH
Confidence 1125678899999999999999999999999999743 111110000 01110
Q ss_pred --cCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000055 2503 --QPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2503 --~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
-..+...+ ..|..+.|+|+| |+-.+.|+++.+=|....
T Consensus 197 ~lm~E~~~~g----gwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 197 QLMSEASSSG----GWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred HHHHhhccCC----CceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 00111222 335777999999 999999999999887665
No 210
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.94 E-value=1.7e-08 Score=125.41 Aligned_cols=187 Identities=16% Similarity=0.179 Sum_probs=124.7
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCcccc
Q 000055 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
|.+--++.|=.-|.|.+.|....+..+.+.. ........|+++.|-| +...++.+-.+|.+.++|.+-..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne------~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~--- 253 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNE------ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC--- 253 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhh------cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc---
Confidence 5666677887888898888765322222211 0111237899999999 45677888899999999874211
Q ss_pred cccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCE
Q 000055 2308 VRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPL 2387 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~l 2387 (2548)
+....-....+++..++... |--.. ...++..+.--.+.|+.++|+|+ +++
T Consensus 254 -----------~~t~p~~~~~k~~~~f~i~t----------~ksk~-~rNPv~~w~~~~g~in~f~FS~D-------G~~ 304 (636)
T KOG2394|consen 254 -----------GATAPSYQALKDGDQFAILT----------SKSKK-TRNPVARWHIGEGSINEFAFSPD-------GKY 304 (636)
T ss_pred -----------cCCCCcccccCCCCeeEEee----------eeccc-cCCccceeEeccccccceeEcCC-------Cce
Confidence 00111111224555554432 11111 01344444445669999999997 899
Q ss_pred EEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCC
Q 000055 2388 IVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTS 2467 (2548)
Q Consensus 2388 LVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~ 2467 (2548)
|++.+.||.+||||+. +.+.+.. ++.--+...||+|+|||+
T Consensus 305 LA~VSqDGfLRvF~fd---t~eLlg~------------------------------------mkSYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 305 LATVSQDGFLRIFDFD---TQELLGV------------------------------------MKSYFGGLLCVCWSPDGK 345 (636)
T ss_pred EEEEecCceEEEeecc---HHHHHHH------------------------------------HHhhccceEEEEEcCCcc
Confidence 9999999999999953 2222211 133456889999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEe
Q 000055 2468 LFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2468 ~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
|+++|++|-.|.||.+..++.+..-
T Consensus 346 yIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred EEEecCCcceEEEEEeccceEEEec
Confidence 9999999999999999999988744
No 211
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.94 E-value=2.4e-08 Score=118.92 Aligned_cols=286 Identities=14% Similarity=0.170 Sum_probs=178.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCC-----CCCCeEEEEEccCC--CEEEEEeCC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPY-----ALASISALQFDHYG--HRFASAALD 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~-----H~~~VtsVaFSPdG--~~LaSGS~D 2292 (2548)
+.++.|...|.+||||..+|.|.++.-.... ....+..++.|.....+ -...|..++|.+++ ..++....|
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd 107 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND 107 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence 6889999999999999999999999866322 22233334444322111 13579999998864 567888999
Q ss_pred CcEEEEEcCCCcccc----c-------------ccC----c------cc-eeccCCcccEEE--EcCCCCEEEEEeccCC
Q 000055 2293 GTVCTWQLEVGGRSN----V-------------RPM----E------SC-LCFSSHAMDVSY--ITSSGSVIAAAGHSSN 2342 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~----i-------------~p~----~------s~-~t~~gH~~~V~a--fSpdGslLATgG~SS~ 2342 (2548)
++|++|.+....... . .|. . +. ..-.+|+.-|.+ ++.|+..++++ +
T Consensus 108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA----D 183 (433)
T KOG1354|consen 108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA----D 183 (433)
T ss_pred cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec----c
Confidence 999999986432110 0 000 0 00 012345555543 66788899997 7
Q ss_pred CCeEEEEECCCCCCC-cceeeecc-----CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecC
Q 000055 2343 GINVVVWDTLAPPTS-SRASITCH-----EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHS 2416 (2548)
Q Consensus 2343 DGtVrIWDl~t~~~k-~v~sl~gH-----s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~ 2416 (2548)
|=.|.+|.+...+.. .+..++.+ +.-|++..|+|.. .++++-.++.|+|++-|+|+.. -|..+...
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~------cn~f~YSSSKGtIrLcDmR~~a--LCd~hsKl 255 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH------CNVFVYSSSKGTIRLCDMRQSA--LCDAHSKL 255 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH------ccEEEEecCCCcEEEeechhhh--hhcchhhh
Confidence 999999998753222 13333333 3468999999996 6799999999999999988411 11111100
Q ss_pred CCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC-CCCcEEEEeccc
Q 000055 2417 DRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDA-KAAQLVYHWSKL 2495 (2548)
Q Consensus 2417 ~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl-~Tgell~tL~~~ 2495 (2548)
...... |.. -+.+.+--..|..+.|+++|+|+++-.. -+|++||+ ...+++.+++ .
T Consensus 256 fEeped---------p~~------------rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~-v 312 (433)
T KOG1354|consen 256 FEEPED---------PSS------------RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYP-V 312 (433)
T ss_pred hccccC---------Ccc------------hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEe-e
Confidence 000000 000 0012334457889999999999987643 58999999 4677777763 2
Q ss_pred ccc--cccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000055 2496 HER--HTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2496 Hs~--hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
|.. ..+ .... -.+.|-+ =..++|+.++ ++|||....++++++..|..
T Consensus 313 h~~lr~kL-c~lY--EnD~Ifd-KFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 313 HEYLRSKL-CSLY--ENDAIFD-KFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred hHhHHHHH-HHHh--hccchhh-eeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 211 000 0000 1122212 2456898887 88999999999999877653
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.93 E-value=1.4e-07 Score=112.39 Aligned_cols=237 Identities=17% Similarity=0.182 Sum_probs=148.1
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCC------CcE
Q 000055 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALD------GTV 2295 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~D------GtV 2295 (2548)
..++|+.|...+++|..+| .+||+.+--+....-+- ...+ -.+..|-| ..++++ +||.+ ..|
T Consensus 9 lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~------~~~G--~~~veMLf--R~N~laLVGGg~~pky~pNkv 77 (346)
T KOG2111|consen 9 LSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF------IDGG--FKIVEMLF--RSNYLALVGGGSRPKYPPNKV 77 (346)
T ss_pred eEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc------ccCc--hhhhhHhh--hhceEEEecCCCCCCCCCceE
Confidence 5588989988888887776 89999775221111000 0000 11222222 233343 44443 379
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc--CCCeEEEE
Q 000055 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH--EGGARSIS 2373 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH--s~~VtSLa 2373 (2548)
.|||=....++. ...+ ...|.++.-....|++. ..+.|.+|..... .+.++.+... ..++-+++
T Consensus 78 iIWDD~k~~~i~------el~f---~~~I~~V~l~r~riVvv----l~~~I~VytF~~n-~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 78 IIWDDLKERCII------ELSF---NSEIKAVKLRRDRIVVV----LENKIYVYTFPDN-PKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred EEEecccCcEEE------EEEe---ccceeeEEEcCCeEEEE----ecCeEEEEEcCCC-hhheeeeecccCCCceEeec
Confidence 999933222211 1112 23454433445666666 5789999998642 3334444322 23333333
Q ss_pred EccCCCCCCCCCCEEEE-EeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000055 2374 VFDNDLGSGSVSPLIVT-GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVS-GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
|.. ...+||- |-.-|.|+|-|+.....+. ... ..+
T Consensus 144 --~~~-----~k~~LafPg~k~GqvQi~dL~~~~~~~-p~~------------------------------------I~A 179 (346)
T KOG2111|consen 144 --PTS-----NKSLLAFPGFKTGQVQIVDLASTKPNA-PSI------------------------------------INA 179 (346)
T ss_pred --CCC-----CceEEEcCCCccceEEEEEhhhcCcCC-ceE------------------------------------EEc
Confidence 321 1334444 4467899999975322210 111 178
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCc-EEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEE
Q 000055 2453 HLGSVTRISTVPNTSLFLTGSKDGD-VKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS 2529 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGt-IrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS 2529 (2548)
|.+.|.|++.+-+|..+||+|..|+ |||||..+|++++++. .|...+.|.+++|||+. |+.
T Consensus 180 H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R----------------RG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 180 HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR----------------RGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee----------------cCCchheEEEEEeCCCccEEEE
Confidence 9999999999999999999999996 7999999999999882 23334779999999999 888
Q ss_pred EECCCcEEEEECCCC
Q 000055 2530 CGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2530 GS~DGtIrIWDL~sg 2544 (2548)
+|+-||+.|+.+.+.
T Consensus 244 sSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRDT 258 (346)
T ss_pred EcCCCeEEEEEeecC
Confidence 889999999999764
No 213
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.91 E-value=6.4e-09 Score=120.48 Aligned_cols=155 Identities=14% Similarity=0.290 Sum_probs=118.3
Q ss_pred EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCC-cccccccC
Q 000055 2233 FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVG-GRSNVRPM 2311 (2548)
Q Consensus 2233 ~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tg-k~i~i~p~ 2311 (2548)
++++|-++|.|.+||+.++..+..+.....-..+...|..+|.++.+.+.-+.=++|+.+..+..|.++.. ....+
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~--- 243 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI--- 243 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc---
Confidence 56689999999999999986555544322222356678899999999986666678888889999998643 11111
Q ss_pred ccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEE
Q 000055 2312 ESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTG 2391 (2548)
Q Consensus 2312 ~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSG 2391 (2548)
....++....-.-..+.||++.+||+| .|+.|++|..++ .+++..++.|.++|++++|+|+ ..+++.+
T Consensus 244 ~~e~~lknpGv~gvrIRpD~KIlATAG---WD~RiRVyswrt--l~pLAVLkyHsagvn~vAfspd-------~~lmAaa 311 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRPDGKILATAG---WDHRIRVYSWRT--LNPLAVLKYHSAGVNAVAFSPD-------CELMAAA 311 (323)
T ss_pred cceEEecCCCccceEEccCCcEEeecc---cCCcEEEEEecc--CCchhhhhhhhcceeEEEeCCC-------Cchhhhc
Confidence 112222222212224789999999999 999999999987 7889999999999999999999 6799999
Q ss_pred eCCCcEEEEeC
Q 000055 2392 GKGGDVGIHDF 2402 (2548)
Q Consensus 2392 S~DGtVrLWDL 2402 (2548)
+.|+.|.+|++
T Consensus 312 skD~rISLWkL 322 (323)
T KOG0322|consen 312 SKDARISLWKL 322 (323)
T ss_pred cCCceEEeeec
Confidence 99999999984
No 214
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=5.8e-08 Score=116.19 Aligned_cols=247 Identities=11% Similarity=0.024 Sum_probs=159.3
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCcccee-ccCCcccEEE--EcCCCCEEEEEeccCCCC
Q 000055 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLC-FSSHAMDVSY--ITSSGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t-~~gH~~~V~a--fSpdGslLATgG~SS~DG 2344 (2548)
.+|.+-|.++.|+.++++|++|+.|..+++|.++..-...+ ..+.+. -..|...|.+ |......+.+|+ .++
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~--~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~---~~~ 127 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT--PKPIGVMEHPHRSNIFSLEFDLENRFLYSGE---RWG 127 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC--CCCceeccCccccceEEEEEccCCeeEecCC---Ccc
Confidence 35789999999999999999999999999999874321111 011111 2234456655 776677888887 899
Q ss_pred eEEEEECCCCCCCcceeee--ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCC
Q 000055 2345 NVVVWDTLAPPTSSRASIT--CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS 2422 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~--gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~ 2422 (2548)
+|...|+.+ .+.+..+. ...+.|..+..+|. .+.+++.+.+|.|.+||.|.....-.+... ....
T Consensus 128 ~VI~HDiEt--~qsi~V~~~~~~~~~VY~m~~~P~-------DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~----AN~~ 194 (609)
T KOG4227|consen 128 TVIKHDIET--KQSIYVANENNNRGDVYHMDQHPT-------DNTLIVVTRAKLVSFIDNRDRQNPISLVLP----ANSG 194 (609)
T ss_pred eeEeeeccc--ceeeeeecccCcccceeecccCCC-------CceEEEEecCceEEEEeccCCCCCCceeee----cCCC
Confidence 999999987 34443332 23458999999998 578999999999999998753311111111 0111
Q ss_pred ccccccccCCCCCC---ccCCCCCceEEEccc------------CCCC---CEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000055 2423 INTCAHADAQTGSG---SKPGDQNGMLWYIPK------------AHLG---SVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2423 ~~~~~vafSpdGk~---v~s~D~sv~Iwdi~~------------gH~~---~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
...-.+-|.|.... +....+.+.+||+.. +-.. .-.++.|+|+|..|.+--...--..||+-
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 11223345554332 555666678888522 1111 23567899999988877555555678877
Q ss_pred CCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCC
Q 000055 2485 AAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2485 Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~s 2543 (2548)
+.++. .++..|-. .|. ...+.+.+++|-.+. ++||++|-.|.+|.++.
T Consensus 275 S~R~~-V~k~D~N~--------~GY--~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 275 SQRCF-VLKSDHNP--------NGY--CNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred cccce-eEeccCCC--------Ccc--eeeeeeeeeeeecceeeeccCcccceEEEecCC
Confidence 64332 23212211 111 122446677888887 99999999999999974
No 215
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=6.8e-07 Score=117.36 Aligned_cols=285 Identities=13% Similarity=0.115 Sum_probs=183.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000055 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.++.+++.|.+....-. ..+.+|+..++. ....... ....|...+++.+++|+++++++|..||.|.+|.--.
T Consensus 164 ~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~--~~~~~~~----~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~ 236 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHM-CKIHIYFVPKHT--KHTSSRD----ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFG 236 (792)
T ss_pred ccEEEcCCceEEEEEEe-eeEEEEEecccc--eeeccch----hhhhhcccceeEEeccccceEEEeccCCcEEEEeccc
Confidence 56777788876665443 458889888755 1111111 2344667799999999999999999999999997543
Q ss_pred CcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000055 2303 GGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
.+ ....+..++.-|...|.+ |+++|.++++|| ..+.+.+|.+.++. .+-+..-.+.|..+.++|+
T Consensus 237 ~~----~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG---~E~VLv~Wq~~T~~---kqfLPRLgs~I~~i~vS~d--- 303 (792)
T KOG1963|consen 237 SS----DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG---REGVLVLWQLETGK---KQFLPRLGSPILHIVVSPD--- 303 (792)
T ss_pred cc----cccccceEEEecccccceeEEecCCceEeecc---cceEEEEEeecCCC---cccccccCCeeEEEEEcCC---
Confidence 11 111244568889888874 899999999999 89999999998743 3334445689999999998
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCC----CCCCCccccccccCCC-CCC-ccCCCCCceEEEccc---
Q 000055 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSD----RGGSSINTCAHADAQT-GSG-SKPGDQNGMLWYIPK--- 2451 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~----~~~s~~~~~~vafSpd-Gk~-v~s~D~sv~Iwdi~~--- 2451 (2548)
+.+.+....|..|.+-....+.....+..+... ........+.+.++|. +.. ..+..+.+.+|+..+
T Consensus 304 ----s~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~ 379 (792)
T KOG1963|consen 304 ----SDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDST 379 (792)
T ss_pred ----CCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccce
Confidence 678888888999999885433333334333111 0011222334455552 222 445556666666322
Q ss_pred ----------------CCCCCEEEEEEeCCCCEEEEEeC--------CC--cEEEEECCCCcEEEEecccccccccccCc
Q 000055 2452 ----------------AHLGSVTRISTVPNTSLFLTGSK--------DG--DVKLWDAKAAQLVYHWSKLHERHTFLQPS 2505 (2548)
Q Consensus 2452 ----------------gH~~~VtsLafSPdG~~LaSGS~--------DG--tIrIWDl~Tgell~tL~~~Hs~hsfl~~t 2505 (2548)
.+.-.+++++.+-.|.+++|+-. || .+|+|-......-..+.. ..
T Consensus 380 i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T---------~I 450 (792)
T KOG1963|consen 380 IYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNT---------KI 450 (792)
T ss_pred eeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEE---------EE
Confidence 12335778888888999988643 44 467787654433322210 01
Q ss_pred ccCCCCceeecEEEEEEcCC---eEEEEECCCcEEEEECCC
Q 000055 2506 SRGFGGVVRAGVTDIQVVSR---GFLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2506 l~GH~~~V~a~VtsLafSPd---GLaSGS~DGtIrIWDL~s 2543 (2548)
-..|+..+-+. +..++. +.+|+|.||.+|||-+.+
T Consensus 451 ~~PH~~~~vat---~~~~~~rs~~~vta~~dg~~KiW~~~~ 488 (792)
T KOG1963|consen 451 NNPHGNAFVAT---IFLNPTRSVRCVTASVDGDFKIWVFTD 488 (792)
T ss_pred ecCCCceeEEE---EEecCcccceeEEeccCCeEEEEEEec
Confidence 24466544232 333333 388999999999999854
No 216
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.80 E-value=1.2e-07 Score=126.44 Aligned_cols=214 Identities=18% Similarity=0.176 Sum_probs=137.8
Q ss_pred CCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeE
Q 000055 2270 ALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2270 H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtV 2346 (2548)
|...|..++.++. +.+|+||+.||+|++|+.+.-... .....+..++..-...+. ...+.++.+|.++ .||.|
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t---~DG~v 1122 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-GGSARSELTYSPEGSRVEKVTMCGNGDQFAVST---KDGSV 1122 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcC-cceeeeeEEEeccCCceEEEEeccCCCeEEEEc---CCCeE
Confidence 5577888888775 599999999999999998643211 012223333333333443 3567888999985 99999
Q ss_pred EEEECCCCCCC-----cceeeeccC-CCeEEE-EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCC
Q 000055 2347 VVWDTLAPPTS-----SRASITCHE-GGARSI-SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRG 2419 (2548)
Q Consensus 2347 rIWDl~t~~~k-----~v~sl~gHs-~~VtSL-afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~ 2419 (2548)
++.++...... +......+. +.+.++ ++.... .+..++.+...+.|..||+|+......++.
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~-----~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~------ 1191 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIV-----QSHVLVYATDLSRIVSWDTRMRHDAWRLKN------ 1191 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccc-----cceeEEEEEeccceEEecchhhhhHHhhhc------
Confidence 99998752111 112222232 233333 333222 134888899999999999875211111111
Q ss_pred CCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccccc
Q 000055 2420 GSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERH 2499 (2548)
Q Consensus 2420 ~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~h 2499 (2548)
....|.|++++.+|.+.++++|+..|.+.+||++-+.++..+.
T Consensus 1192 -------------------------------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~------ 1234 (1431)
T KOG1240|consen 1192 -------------------------------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE------ 1234 (1431)
T ss_pred -------------------------------CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc------
Confidence 2345789999999999999999999999999999999988773
Q ss_pred ccccCcccCCCCceeecEEEEEEc---CCe---EEEEE-CCCcEEEEECCCCcc
Q 000055 2500 TFLQPSSRGFGGVVRAGVTDIQVV---SRG---FLSCG-GDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2500 sfl~~tl~GH~~~V~a~VtsLafS---PdG---LaSGS-~DGtIrIWDL~sg~l 2546 (2548)
.++. +.+..+..+ |.. +.+++ ..+-|.+|++.+|..
T Consensus 1235 -------~P~~----~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1235 -------HPAR----APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred -------Cccc----CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 1122 222333333 322 44444 678899999998854
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=2.7e-06 Score=110.47 Aligned_cols=217 Identities=12% Similarity=0.128 Sum_probs=135.0
Q ss_pred CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC---CCcEEEEEcCCCcccccccCccceec
Q 000055 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---DGTVCTWQLEVGGRSNVRPMESCLCF 2317 (2548)
Q Consensus 2241 GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~---DGtVrVWDl~tgk~i~i~p~~s~~t~ 2317 (2548)
..|.++|.+......... +...+.+.+|+|||+.|+..+. +..|.+|++.+++...+. .+
T Consensus 179 ~~l~~~d~dg~~~~~lt~-----------~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~------~~ 241 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHR-----------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA------SF 241 (429)
T ss_pred eeEEEEcCCCCCCEEeec-----------CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc------CC
Confidence 368888887554322211 2367999999999999987643 357899999877532211 13
Q ss_pred cCCcccEEEEcCCCCEEEEEeccCCCC--eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC-C
Q 000055 2318 SSHAMDVSYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGK-G 2394 (2548)
Q Consensus 2318 ~gH~~~V~afSpdGslLATgG~SS~DG--tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~-D 2394 (2548)
.++... ..|+|||+.|+... +.+| .|.+||+.+ ++ ...+..+...+....|+|+ ++.|+..+. +
T Consensus 242 ~~~~~~-~~~SPDG~~La~~~--~~~g~~~I~~~d~~t--g~-~~~lt~~~~~~~~~~wSPD-------G~~I~f~s~~~ 308 (429)
T PRK03629 242 PRHNGA-PAFSPDGSKLAFAL--SKTGSLNLYVMDLAS--GQ-IRQVTDGRSNNTEPTWFPD-------SQNLAYTSDQA 308 (429)
T ss_pred CCCcCC-eEECCCCCEEEEEE--cCCCCcEEEEEECCC--CC-EEEccCCCCCcCceEECCC-------CCEEEEEeCCC
Confidence 344333 35999999888654 1344 588899875 33 3334444556788999999 677766554 4
Q ss_pred CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeC
Q 000055 2395 GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK 2474 (2548)
Q Consensus 2395 GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~ 2474 (2548)
|...+|.+. +.+++.. .+ ..+...+....|+|+|++++..+.
T Consensus 309 g~~~Iy~~d-~~~g~~~-~l------------------------------------t~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 309 GRPQVYKVN-INGGAPQ-RI------------------------------------TWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred CCceEEEEE-CCCCCeE-Ee------------------------------------ecCCCCccCEEECCCCCEEEEEEc
Confidence 566666532 3333321 11 112223456889999999887665
Q ss_pred C---CcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCc---EEEEECCCCc
Q 000055 2475 D---GDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGS---VKLIQLEDYQ 2545 (2548)
Q Consensus 2475 D---GtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGt---IrIWDL~sg~ 2545 (2548)
+ ..|.+||+.+++.. .+. ..+. ..+..|+||| |+.++.|+. +.+++++++.
T Consensus 351 ~~g~~~I~~~dl~~g~~~-~Lt-------------~~~~------~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQ-VLT-------------DTFL------DETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred cCCCceEEEEECCCCCeE-EeC-------------CCCC------CCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 3 35888999888643 331 1110 1123799999 777776654 7778876543
No 218
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.75 E-value=1.5e-07 Score=124.78 Aligned_cols=201 Identities=14% Similarity=0.134 Sum_probs=143.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEEC
Q 000055 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl 2351 (2548)
+.|....+.-+..+++.+..+..+.+||...+......+ ....+.. -...+.-.+++.-++++|. --+.|.+|+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~-~~er~~l-~~~~~~g~s~~~~~i~~gs---v~~~iivW~~ 162 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ-SDERCTL-YSSLIIGDSAEELYIASGS---VFGEIIVWKP 162 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcC-CCceEEE-EeEEEEeccCcEEEEEecc---ccccEEEEec
Confidence 455555666678889999999999999997653221110 0000000 0011112566666777764 7789999998
Q ss_pred CCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000055 2352 LAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2352 ~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
.. +..++ .+.+|.+.|.++.++.+ |.++++.+.|.++|+|++ .+++....
T Consensus 163 ~~-dn~p~-~l~GHeG~iF~i~~s~d-------g~~i~s~SdDRsiRlW~i---~s~~~~~~------------------ 212 (967)
T KOG0974|consen 163 HE-DNKPI-RLKGHEGSIFSIVTSLD-------GRYIASVSDDRSIRLWPI---DSREVLGC------------------ 212 (967)
T ss_pred cc-cCCcc-eecccCCceEEEEEccC-------CcEEEEEecCcceeeeec---ccccccCc------------------
Confidence 73 23333 67899999999999988 889999999999999994 44443321
Q ss_pred CCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCC
Q 000055 2432 QTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGG 2511 (2548)
Q Consensus 2432 pdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~ 2511 (2548)
..-+|...|..+.|+|+ .++|++.|.+.++|+.. +..+.++ .+|.+
T Consensus 213 -----------------~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y--------------~~h~g 258 (967)
T KOG0974|consen 213 -----------------TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVY--------------DEHSG 258 (967)
T ss_pred -----------------ccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhh--------------hhhhh
Confidence 01579999999999998 99999999999999765 3433344 45544
Q ss_pred ceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000055 2512 VVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2512 ~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
..++.++..++. ++|++.||++++|++.+.
T Consensus 259 ---~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 259 ---KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ---cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 336777888888 789999999999998754
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.75 E-value=3.1e-07 Score=106.97 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=102.8
Q ss_pred EEcCCCCEEEEEecc-------CCCCeEEEEECCCCCCCcceeeec-cCCCeEEEEEccCCCCCCCCCCEE--EEEeCCC
Q 000055 2326 YITSSGSVIAAAGHS-------SNGINVVVWDTLAPPTSSRASITC-HEGGARSISVFDNDLGSGSVSPLI--VTGGKGG 2395 (2548)
Q Consensus 2326 afSpdGslLATgG~S-------S~DGtVrIWDl~t~~~k~v~sl~g-Hs~~VtSLafsP~dlg~gs~g~lL--VSGS~DG 2395 (2548)
.|+++|+.|+.-... +.-+...+|.++.. ...+..+.- ..+.|.+++|+|+ ++.+ ++|..++
T Consensus 12 ~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~-~~~~~~i~l~~~~~I~~~~WsP~-------g~~favi~g~~~~ 83 (194)
T PF08662_consen 12 HWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK-NIPVESIELKKEGPIHDVAWSPN-------GNEFAVIYGSMPA 83 (194)
T ss_pred EecccCCEEEEEEEEeeccCcceEEeeEEEEEEecC-CCccceeeccCCCceEEEEECcC-------CCEEEEEEccCCc
Confidence 377888766654310 01134556666443 234444443 3457999999999 5554 3455788
Q ss_pred cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeC-
Q 000055 2396 DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK- 2474 (2548)
Q Consensus 2396 tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~- 2474 (2548)
.|.+||++ ++.+..+ +...+..+.|+|+|++|++|+.
T Consensus 84 ~v~lyd~~----~~~i~~~--------------------------------------~~~~~n~i~wsP~G~~l~~~g~~ 121 (194)
T PF08662_consen 84 KVTLYDVK----GKKIFSF--------------------------------------GTQPRNTISWSPDGRFLVLAGFG 121 (194)
T ss_pred ccEEEcCc----ccEeEee--------------------------------------cCCCceEEEECCCCCEEEEEEcc
Confidence 99999953 3444443 3456788999999999999875
Q ss_pred --CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEE------CCCcEEEEECCCC
Q 000055 2475 --DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCG------GDGSVKLIQLEDY 2544 (2548)
Q Consensus 2475 --DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS------~DGtIrIWDL~sg 2544 (2548)
.|.|.+||+++.+.+.+.. |. .++.++|+|+| +++++ .|+.++||++.+.
T Consensus 122 n~~G~l~~wd~~~~~~i~~~~---------------~~-----~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 122 NLNGDLEFWDVRKKKKISTFE---------------HS-----DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCCcEEEEEECCCCEEeeccc---------------cC-----cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 4679999999888887551 22 24678999999 66554 3899999999765
Q ss_pred c
Q 000055 2545 Q 2545 (2548)
Q Consensus 2545 ~ 2545 (2548)
.
T Consensus 182 ~ 182 (194)
T PF08662_consen 182 L 182 (194)
T ss_pred E
Confidence 4
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=3.7e-07 Score=111.10 Aligned_cols=238 Identities=12% Similarity=0.175 Sum_probs=155.0
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccc
Q 000055 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNV 2308 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i 2308 (2548)
+....+...+.|..+..+.+............. ......+.|..++.. ...|++|-.+|.+.+|....+....
T Consensus 67 ~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~----~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hs- 139 (412)
T KOG3881|consen 67 GETEVLNARSADDDLPKFVIEEFEISSSLDDAK----TVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHS- 139 (412)
T ss_pred CceeEeeccccCcccccccccCCcccccccccc----ccccccccccchhhc--CCEEEEEecCCcEEEEeccCCcccc-
Confidence 334455555566667777766554433321100 011123556555543 4568999999999999998553111
Q ss_pred ccCccceeccCCcccEEE---EcCCCCEEEEEeccCCC--CeEEEEECCCCCCCcceeeecc-----------CCCeEEE
Q 000055 2309 RPMESCLCFSSHAMDVSY---ITSSGSVIAAAGHSSNG--INVVVWDTLAPPTSSRASITCH-----------EGGARSI 2372 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~V~a---fSpdGslLATgG~SS~D--GtVrIWDl~t~~~k~v~sl~gH-----------s~~VtSL 2372 (2548)
.+ ...+..+ ..+.. ...+..++++|| .. ..++|||+.. . .+.+.+- .-.++++
T Consensus 140 s~---l~~la~g-~g~~~~r~~~~~p~Iva~GG---ke~~n~lkiwdle~--~--~qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 140 SK---LIKLATG-PGLYDVRQTDTDPYIVATGG---KENINELKIWDLEQ--S--KQIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred cc---ceeeecC-CceeeeccCCCCCceEecCc---hhcccceeeeeccc--c--eeeeeccCCCCccccceeeeeeccc
Confidence 00 0111111 12221 233445777777 56 7899999975 2 3333321 1245678
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000055 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
.|.+.+ ....+++++.-+.|++||.+ ...+++..+ .-
T Consensus 209 ~Fl~g~-----~~~~fat~T~~hqvR~YDt~--~qRRPV~~f------------------------------------d~ 245 (412)
T KOG3881|consen 209 RFLEGS-----PNYKFATITRYHQVRLYDTR--HQRRPVAQF------------------------------------DF 245 (412)
T ss_pred eecCCC-----CCceEEEEecceeEEEecCc--ccCcceeEe------------------------------------cc
Confidence 887763 25699999999999999965 122333333 22
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE
Q 000055 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC 2530 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG 2530 (2548)
-+.+|+++...|+|+++++|..-|.+..||++++++.... +.|..+ .+.+|..+|.+ +++|
T Consensus 246 ~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~-------------~kg~tG----sirsih~hp~~~~las~ 308 (412)
T KOG3881|consen 246 LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG-------------LKGITG----SIRSIHCHPTHPVLASC 308 (412)
T ss_pred ccCcceeeeecCCCcEEEEecccchhheecccCceeeccc-------------cCCccC----CcceEEEcCCCceEEee
Confidence 4678999999999999999999999999999999887542 355554 35677899997 8899
Q ss_pred ECCCcEEEEECCCC
Q 000055 2531 GGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2531 S~DGtIrIWDL~sg 2544 (2548)
|-|..|||+|+++.
T Consensus 309 GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 309 GLDRYVRIHDIKTR 322 (412)
T ss_pred ccceeEEEeecccc
Confidence 99999999999984
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=7.5e-07 Score=115.55 Aligned_cols=200 Identities=14% Similarity=0.132 Sum_probs=122.4
Q ss_pred EEEEEEcCCCCEEEEEE---CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCC--cE
Q 000055 2222 TRAFSSHPLRPFFLVGS---SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDG--TV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS---~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DG--tV 2295 (2548)
+...+|+|||+.|+..+ .+..|.+|++.+++.... ..++ +.+...+|+|||+.|+.. +.+| .|
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~----------~~~~~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFP----------RHNGAPAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCC----------CCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence 57899999999988643 345799999988764322 1111 234568999999988865 4455 58
Q ss_pred EEEEcCCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000055 2296 CTWQLEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
.+||+++++.... ...+.. .-..|+|||+.|+.+. ..++...||.+....+ ....+..+........|
T Consensus 270 ~~~d~~tg~~~~l--------t~~~~~~~~~~wSPDG~~I~f~s--~~~g~~~Iy~~d~~~g-~~~~lt~~~~~~~~~~~ 338 (429)
T PRK03629 270 YVMDLASGQIRQV--------TDGRSNNTEPTWFPDSQNLAYTS--DQAGRPQVYKVNINGG-APQRITWEGSQNQDADV 338 (429)
T ss_pred EEEECCCCCEEEc--------cCCCCCcCceEECCCCCEEEEEe--CCCCCceEEEEECCCC-CeEEeecCCCCccCEEE
Confidence 8889987643221 111111 1125999999887764 1345555554332212 23344444455667889
Q ss_pred ccCCCCCCCCCCEEEEEeCC---CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000055 2375 FDNDLGSGSVSPLIVTGGKG---GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~D---GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
+|+ ++.++..+.+ ..|.+|| +.+++. +.+. .
T Consensus 339 SpD-------G~~Ia~~~~~~g~~~I~~~d---l~~g~~-~~Lt-----------------------------------~ 372 (429)
T PRK03629 339 SSD-------GKFMVMVSSNGGQQHIAKQD---LATGGV-QVLT-----------------------------------D 372 (429)
T ss_pred CCC-------CCEEEEEEccCCCceEEEEE---CCCCCe-EEeC-----------------------------------C
Confidence 998 6777665543 3577888 344432 2220 0
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCc---EEEEECCCCcEEEEe
Q 000055 2452 AHLGSVTRISTVPNTSLFLTGSKDGD---VKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGt---IrIWDl~Tgell~tL 2492 (2548)
.+ ......|+|||++|+.++.|+. +.++++. |+....+
T Consensus 373 ~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l 413 (429)
T PRK03629 373 TF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARL 413 (429)
T ss_pred CC--CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEEC
Confidence 01 1225679999999999988764 6777774 5544444
No 222
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.74 E-value=6.4e-08 Score=119.83 Aligned_cols=246 Identities=13% Similarity=0.103 Sum_probs=145.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE-EcCCCCEEEEEeccCCCCeEEE
Q 000055 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY-ITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a-fSpdGslLATgG~SS~DGtVrI 2348 (2548)
|...|.++.|+.+...+.+++.+..++-||+.+.................|...-.. -......++.+ |.||.+.|
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~---s~DGkf~i 89 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLIC---SNDGRFVI 89 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEE---cCCceEEE
Confidence 567788999998887777766666666667654422111100000001112110000 01122355555 38999988
Q ss_pred EECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000055 2349 WDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
-+-. ++....+.+|.+.+.+-.|+|+ |.-|+|+|.||.|++|.- +|....++ ........++
T Consensus 90 l~k~---~rVE~sv~AH~~A~~~gRW~~d-------GtgLlt~GEDG~iKiWSr----sGMLRStl----~Q~~~~v~c~ 151 (737)
T KOG1524|consen 90 LNKS---ARVERSISAHAAAISSGRWSPD-------GAGLLTAGEDGVIKIWSR----SGMLRSTV----VQNEESIRCA 151 (737)
T ss_pred eccc---chhhhhhhhhhhhhhhcccCCC-------CceeeeecCCceEEEEec----cchHHHHH----hhcCceeEEE
Confidence 8753 5566778899999999999999 789999999999999982 33322222 1112234456
Q ss_pred ccCCCCCC-ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe-cccccc
Q 000055 2429 ADAQTGSG-SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW-SKLHER 2498 (2548)
Q Consensus 2429 afSpdGk~-v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL-~~~Hs~ 2498 (2548)
+|.|+..- +.+..+.+.|-.+ -++|++-|.++.|+|..+++++||+|-..+|||.. |+.+.+- ..+|+-
T Consensus 152 ~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAI 230 (737)
T ss_pred EECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccce
Confidence 77777554 3333333322211 15899999999999999999999999999999975 4443322 111100
Q ss_pred --------ccccc---CcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEE
Q 000055 2499 --------HTFLQ---PSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKL 2538 (2548)
Q Consensus 2499 --------hsfl~---~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrI 2538 (2548)
..|+. .+++ .+.+--..|..++||+|| ++.|...|.+.+
T Consensus 231 TSva~npd~~~~v~S~nt~R-~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 231 TSVAFNPEKDYLLWSYNTAR-FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeccccceeeeeeeeee-ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 00100 0011 111111447888999999 666666776544
No 223
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.74 E-value=2.4e-06 Score=101.69 Aligned_cols=267 Identities=12% Similarity=0.183 Sum_probs=172.0
Q ss_pred EEEEEEcCCCCEEEE-EECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEE
Q 000055 2222 TRAFSSHPLRPFFLV-GSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH-RFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LAS-GS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~-~LaSGS~DGtVrVWD 2299 (2548)
+.-+.|..+..+++. ...|+.|.+|++...+-...+.+ ..+.+.+++|+|||+ .|.+...|-.|.+|.
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde----------g~agls~~~WSPdgrhiL~tseF~lriTVWS 120 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE----------GQAGLSSISWSPDGRHILLTSEFDLRITVWS 120 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc----------CCCcceeeeECCCcceEeeeecceeEEEEEE
Confidence 455677777776664 58899999999998877777654 237899999999995 556677899999999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEe---------------------------------ccCCCCeE
Q 000055 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAG---------------------------------HSSNGINV 2346 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG---------------------------------~SS~DGtV 2346 (2548)
+.+.+...+. +..|.....+|++||++.+.+. .+-++..+
T Consensus 121 L~t~~~~~~~-------~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l 193 (447)
T KOG4497|consen 121 LNTQKGYLLP-------HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL 193 (447)
T ss_pred eccceeEEec-------ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE
Confidence 9877543321 4455556667888888776653 01123445
Q ss_pred EEEECCCCCCCcceeeecc-CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc---------cc----------
Q 000055 2347 VVWDTLAPPTSSRASITCH-EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY---------IA---------- 2406 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gH-s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~---------l~---------- 2406 (2548)
.+||.-. + ...+.-| .-++..++|+|. +++|+.|+.|+.+|+.+--. +.
T Consensus 194 aVwd~~L---e-ykv~aYe~~lG~k~v~wsP~-------~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~ 262 (447)
T KOG4497|consen 194 AVWDNVL---E-YKVYAYERGLGLKFVEWSPC-------NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLL 262 (447)
T ss_pred EEecchh---h-heeeeeeeccceeEEEeccc-------cceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhh
Confidence 6666422 1 1111122 357899999998 67999999999998876310 00
Q ss_pred ---cCc-------e----------------------------eeeec--CCCCCCCccccccccCCCCCCccCCCCC---
Q 000055 2407 ---TGK-------T----------------------------KKHKH--SDRGGSSINTCAHADAQTGSGSKPGDQN--- 2443 (2548)
Q Consensus 2407 ---TGk-------~----------------------------l~tl~--~~~~~s~~~~~~vafSpdGk~v~s~D~s--- 2443 (2548)
+-+ + +..++ .+.....+....++|++|..++++.+.+
T Consensus 263 ~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pn 342 (447)
T KOG4497|consen 263 EKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPN 342 (447)
T ss_pred hhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCc
Confidence 000 0 00000 0111112334556788888886666554
Q ss_pred -ceEEEccc-------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceee
Q 000055 2444 -GMLWYIPK-------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2444 -v~Iwdi~~-------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
+-+||+.. ....+|....|+|....|+.+.....+.+|...-...+..- ..|.
T Consensus 343 alW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP-------------~~GF------ 403 (447)
T KOG4497|consen 343 ALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP-------------KKGF------ 403 (447)
T ss_pred eEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC-------------CCCc------
Confidence 36788532 24568899999998877777776777889987654444321 1332
Q ss_pred cEEEEEEcCCe--EEEEECCCc
Q 000055 2516 GVTDIQVVSRG--FLSCGGDGS 2535 (2548)
Q Consensus 2516 ~VtsLafSPdG--LaSGS~DGt 2535 (2548)
.|.++.|..+| ++-++.|.-
T Consensus 404 ~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 404 NIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eeeeEEecCCCcEEEEEcCCce
Confidence 26778999888 777777753
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.73 E-value=4.9e-06 Score=99.55 Aligned_cols=180 Identities=14% Similarity=0.258 Sum_probs=129.2
Q ss_pred CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCC
Q 000055 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSH 2320 (2548)
Q Consensus 2241 GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH 2320 (2548)
+.|.|||=...+++.++.- ..+|.+|.+.++- +++. .++.|.||.....-+. .... .+. ..
T Consensus 75 NkviIWDD~k~~~i~el~f-----------~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~-l~~~---et~-~N 135 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSF-----------NSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKL-LHVI---ETR-SN 135 (346)
T ss_pred ceEEEEecccCcEEEEEEe-----------ccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhh-eeee---ecc-cC
Confidence 5799999666666666542 3789999998553 4443 4678999998743211 1111 111 11
Q ss_pred cccEEEEcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCc-E
Q 000055 2321 AMDVSYITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGD-V 2397 (2548)
Q Consensus 2321 ~~~V~afSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGt-V 2397 (2548)
...++++.|. ..+||.-| -.-|.|+|-|+.......-..+.+|.+.|.|++.+-+ |.++||+|..|+ |
T Consensus 136 PkGlC~~~~~~~k~~LafPg--~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~-------Gt~vATaStkGTLI 206 (346)
T KOG2111|consen 136 PKGLCSLCPTSNKSLLAFPG--FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ-------GTLVATASTKGTLI 206 (346)
T ss_pred CCceEeecCCCCceEEEcCC--CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC-------ccEEEEeccCcEEE
Confidence 2235555553 34666655 3679999999975323245788899999999999887 889999999996 6
Q ss_pred EEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC-CCCCEEEEEEeCCCCEEEEEeCCC
Q 000055 2398 GIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA-HLGSVTRISTVPNTSLFLTGSKDG 2476 (2548)
Q Consensus 2398 rLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g-H~~~VtsLafSPdG~~LaSGS~DG 2476 (2548)
|||| ..+|..+..++ .| ....|++++|+|++.+|+++|+.|
T Consensus 207 RIFd---t~~g~~l~E~R-----------------------------------RG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 207 RIFD---TEDGTLLQELR-----------------------------------RGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred EEEE---cCCCcEeeeee-----------------------------------cCCchheEEEEEeCCCccEEEEEcCCC
Confidence 9999 66788777762 22 245799999999999999999999
Q ss_pred cEEEEECCCC
Q 000055 2477 DVKLWDAKAA 2486 (2548)
Q Consensus 2477 tIrIWDl~Tg 2486 (2548)
+|+|+.++..
T Consensus 249 TlHiF~l~~~ 258 (346)
T KOG2111|consen 249 TLHIFSLRDT 258 (346)
T ss_pred eEEEEEeecC
Confidence 9999998753
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=4e-07 Score=110.80 Aligned_cols=200 Identities=16% Similarity=0.112 Sum_probs=144.3
Q ss_pred CCEEEEEECCCeEEEEEcCCCc----eeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCC--CcEEEEEcCCC
Q 000055 2231 RPFFLVGSSNTHIYLWEFGKDK----ATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALD--GTVCTWQLEVG 2303 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~----~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~D--GtVrVWDl~tg 2303 (2548)
...|+++-.+|.+.+|....+. .+..+.. ...+..|.-++. ...+++|+.. ..+++||+++.
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~-----------g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~ 183 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-----------GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS 183 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeec-----------CCceeeeccCCCCCceEecCchhcccceeeeecccc
Confidence 3468888999999999987432 1222211 145777777774 4456668888 89999999977
Q ss_pred cccccccCccceeccCCcccEE----EEcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000055 2304 GRSNVRPMESCLCFSSHAMDVS----YITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH~~~V~----afSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+.+-.... .....-+-.-+|+ .|-+. ...||++. .-+.|++||++. ..+++..+..-..+++++...|+
T Consensus 184 ~qiw~aKN-vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T---~~hqvR~YDt~~-qRRPV~~fd~~E~~is~~~l~p~ 258 (412)
T KOG3881|consen 184 KQIWSAKN-VPNDRLGLRVPVWITDIRFLEGSPNYKFATIT---RYHQVRLYDTRH-QRRPVAQFDFLENPISSTGLTPS 258 (412)
T ss_pred eeeeeccC-CCCccccceeeeeeccceecCCCCCceEEEEe---cceeEEEecCcc-cCcceeEeccccCcceeeeecCC
Confidence 43211000 0000011112232 14444 67888885 789999999985 46789999888999999999998
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000055 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
++++++|...|.+..||+| .++.+... +.+-.+.|
T Consensus 259 -------gn~Iy~gn~~g~l~~FD~r---~~kl~g~~-----------------------------------~kg~tGsi 293 (412)
T KOG3881|consen 259 -------GNFIYTGNTKGQLAKFDLR---GGKLLGCG-----------------------------------LKGITGSI 293 (412)
T ss_pred -------CcEEEEecccchhheeccc---Cceeeccc-----------------------------------cCCccCCc
Confidence 8899999999999999966 34444332 26788999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000055 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYH 2491 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~t 2491 (2548)
+++..+|.+++++++|-|..|||+|+++.++++.
T Consensus 294 rsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 294 RSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred ceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 9999999999999999999999999999877653
No 226
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=1.8e-07 Score=115.64 Aligned_cols=256 Identities=15% Similarity=0.150 Sum_probs=167.5
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcC--CCCEEEEEeccCCC
Q 000055 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS--SGSVIAAAGHSSNG 2343 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp--dGslLATgG~SS~D 2343 (2548)
..|.+.|..|.|+..|..+++|+.|..|.+||+..++... ....+|...|.. |-| +.+.+++++ .|
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l-------~f~SGH~~NvfQaKFiP~s~d~ti~~~s---~d 208 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKL-------SFESGHCNNVFQAKFIPFSGDRTIVTSS---RD 208 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCccc-------ccccccccchhhhhccCCCCCcCceecc---cc
Confidence 4467999999999999999999999999999998775321 125678776652 433 345677764 89
Q ss_pred CeEEEEECCCCCC-CcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCC
Q 000055 2344 INVVVWDTLAPPT-SSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS 2422 (2548)
Q Consensus 2344 GtVrIWDl~t~~~-k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~ 2422 (2548)
|.|++=.+..... +....+..|.+.|.-++.-|.. ...+.++|.|+.|.-+|+|.-......... .......
T Consensus 209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~s------p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr-~~~~~~~ 281 (559)
T KOG1334|consen 209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDS------PKPFLSCGEDAVVFHIDLRQDVPAEKFVCR-EADEKER 281 (559)
T ss_pred CceeeeeeccccceecceecccccCccceeeecCCC------CCcccccccccceeeeeeccCCccceeeee-ccCCccc
Confidence 9999887754211 1245566899999999999985 678999999999999998752211111111 1111111
Q ss_pred ccccccccCCCCCC---ccCCCCCceEEEcccC--------------------CCCCEEEEEEeCCCCEEEEEeCCCcEE
Q 000055 2423 INTCAHADAQTGSG---SKPGDQNGMLWYIPKA--------------------HLGSVTRISTVPNTSLFLTGSKDGDVK 2479 (2548)
Q Consensus 2423 ~~~~~vafSpdGk~---v~s~D~sv~Iwdi~~g--------------------H~~~VtsLafSPdG~~LaSGS~DGtIr 2479 (2548)
.....++..|...+ +++.+.-.++|+.... ....|++++|+.++.-|.+.-.|-.|+
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY 361 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence 23344555555443 7777777788874321 123689999998776666677788899
Q ss_pred EEECCC--CcEEEEecccccccccccCcccCCCCceeecEEEEE-EcCCe--EEEEECCCcEEEEECCCCc
Q 000055 2480 LWDAKA--AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ-VVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2480 IWDl~T--gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa-fSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
++.-.- |...... ..+..+....++||.+.-. |-.+- |-|.. +++||+-|.|.||+-.++.
T Consensus 362 LF~~~~~~G~~p~~~---s~~~~~~k~vYKGHrN~~T--VKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPS---SPREQYVKRVYKGHRNSRT--VKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred EeccccccCCCCCCC---cchhhccchhhcccccccc--cceeeeccCccceEEecCccceEEEEecchhH
Confidence 995332 2111111 0011222233688876432 44444 45555 7799999999999987764
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.69 E-value=1.1e-07 Score=112.59 Aligned_cols=222 Identities=11% Similarity=0.048 Sum_probs=141.7
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE-EeCCCcEEEEEcCCC
Q 000055 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDGTVCTWQLEVG 2303 (2548)
Q Consensus 2225 VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS-GS~DGtVrVWDl~tg 2303 (2548)
.+|+|+|+|+|+.+.- .+.|-|..+-+....|.. .+.|.-+.|..|.-+++. ...|+.|.+|++...
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-----------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp 81 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-----------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP 81 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-----------HHHhhheeeeccceeeeeeeeccceEEEEEeecc
Confidence 3567999999998876 777888777665444433 256888899988766555 477889999999854
Q ss_pred cccccccCccceeccCCcccEE-EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCC
Q 000055 2304 GRSNVRPMESCLCFSSHAMDVS-YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSG 2382 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH~~~V~-afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~g 2382 (2548)
+- .-+.-.+..+-+. +|+|||+.|.... +.|-.|.+|.+.+. ....++--...+..++|+|+
T Consensus 82 ew-------~ckIdeg~agls~~~WSPdgrhiL~ts--eF~lriTVWSL~t~---~~~~~~~pK~~~kg~~f~~d----- 144 (447)
T KOG4497|consen 82 EW-------YCKIDEGQAGLSSISWSPDGRHILLTS--EFDLRITVWSLNTQ---KGYLLPHPKTNVKGYAFHPD----- 144 (447)
T ss_pred ee-------EEEeccCCCcceeeeECCCcceEeeee--cceeEEEEEEeccc---eeEEecccccCceeEEECCC-----
Confidence 31 1111223333232 5999997776654 48999999999762 22233333456788999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCc--eEEEcccCCC-CCEEE
Q 000055 2383 SVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNG--MLWYIPKAHL-GSVTR 2459 (2548)
Q Consensus 2383 s~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv--~Iwdi~~gH~-~~Vts 2459 (2548)
|++.+..+....-....+...+.-..++++ .......+.+-++|||..++..|+-. +++ --|. -.+..
T Consensus 145 --g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f----~~dT~DltgieWsPdg~~laVwd~~Leykv~---aYe~~lG~k~ 215 (447)
T KOG4497|consen 145 --GQFCAILSRRDCKDYVQISSCKAWILLKEF----KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY---AYERGLGLKF 215 (447)
T ss_pred --CceeeeeecccHHHHHHHHhhHHHHHHHhc----CCCcccccCceECCCCcEEEEecchhhheee---eeeeccceeE
Confidence 677776664321111111101111222222 22334556778999998755544422 211 1132 47899
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECC
Q 000055 2460 ISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
++|+|.+++|+.|+.|+.+||-+--
T Consensus 216 v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 216 VEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred EEeccccceEEeeccchhhhhhcee
Confidence 9999999999999999999985543
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.68 E-value=1.6e-06 Score=112.36 Aligned_cols=164 Identities=18% Similarity=0.162 Sum_probs=105.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCC---CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEE
Q 000055 2271 LASISALQFDHYGHRFASAALD---GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2271 ~~~VtsVaFSPdG~~LaSGS~D---GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVr 2347 (2548)
...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...+. .+.++.. ...|+|||+.++... +.++...
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~------~~~g~~~-~~~~SPDG~~la~~~--~~~g~~~ 265 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA------NFKGSNS-APAWSPDGRTLAVAL--SRDGNSQ 265 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee------cCCCCcc-ceEECCCCCEEEEEE--ccCCCce
Confidence 3678899999999999887653 35999999887532211 1222221 235999999887543 3677777
Q ss_pred EEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000055 2348 VWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
||.+... ......+..+.+......|+|+ ++.|+..+ .+|...+|.+. ..+++..+..
T Consensus 266 Iy~~d~~-~~~~~~lt~~~~~~~~~~wSpD-------G~~l~f~s~~~g~~~Iy~~~-~~~g~~~~lt------------ 324 (427)
T PRK02889 266 IYTVNAD-GSGLRRLTQSSGIDTEPFFSPD-------GRSIYFTSDRGGAPQIYRMP-ASGGAAQRVT------------ 324 (427)
T ss_pred EEEEECC-CCCcEECCCCCCCCcCeEEcCC-------CCEEEEEecCCCCcEEEEEE-CCCCceEEEe------------
Confidence 7765432 2334555556666677889998 66666544 45777888743 2223221111
Q ss_pred ccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCcEE
Q 000055 2427 AHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDG---DVKLWDAKAAQLV 2489 (2548)
Q Consensus 2427 ~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DG---tIrIWDl~Tgell 2489 (2548)
.+.......+|+|+|++++..+.++ .|.+||+.+++..
T Consensus 325 -------------------------~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 325 -------------------------FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred -------------------------cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 0111223568999999998877654 6999999988754
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=4.4e-06 Score=108.61 Aligned_cols=213 Identities=12% Similarity=0.088 Sum_probs=130.9
Q ss_pred CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC---CCcEEEEEcCCCcccccccCccceec
Q 000055 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---DGTVCTWQLEVGGRSNVRPMESCLCF 2317 (2548)
Q Consensus 2241 GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~---DGtVrVWDl~tgk~i~i~p~~s~~t~ 2317 (2548)
..|.++|.+.... ..+.. |...+.+.+|+|||+.|+..+. +..|.+||+.++.... +
T Consensus 182 ~~l~~~d~dg~~~-~~lt~----------~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~---------l 241 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLTD----------GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL---------V 241 (435)
T ss_pred eEEEEECCCCCCc-EEEec----------CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---------e
Confidence 4788888754432 33321 3468999999999999988764 4689999998775322 1
Q ss_pred cCCcccEE--EEcCCCCEEEEEeccCCCCe--EEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-
Q 000055 2318 SSHAMDVS--YITSSGSVIAAAGHSSNGIN--VVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG- 2392 (2548)
Q Consensus 2318 ~gH~~~V~--afSpdGslLATgG~SS~DGt--VrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS- 2392 (2548)
..+...+. .|+|||+.++... +.++. |.+||+.. + ....+..+.+......|+|+ ++.|+..+
T Consensus 242 ~~~~g~~~~~~~SPDG~~la~~~--~~~g~~~Iy~~d~~~--~-~~~~Lt~~~~~~~~~~~spD-------G~~i~f~s~ 309 (435)
T PRK05137 242 GNFPGMTFAPRFSPDGRKVVMSL--SQGGNTDIYTMDLRS--G-TTTRLTDSPAIDTSPSYSPD-------GSQIVFESD 309 (435)
T ss_pred ecCCCcccCcEECCCCCEEEEEE--ecCCCceEEEEECCC--C-ceEEccCCCCccCceeEcCC-------CCEEEEEEC
Confidence 12222222 4899999876543 24554 77778764 2 33445556666778899998 66666655
Q ss_pred CCC--cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEE
Q 000055 2393 KGG--DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFL 2470 (2548)
Q Consensus 2393 ~DG--tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~La 2470 (2548)
.+| .|.++| ...+.. +.+ ..+.+.+....|+|+|+.|+
T Consensus 310 ~~g~~~Iy~~d---~~g~~~-~~l------------------------------------t~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 310 RSGSPQLYVMN---ADGSNP-RRI------------------------------------SFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred CCCCCeEEEEE---CCCCCe-EEe------------------------------------ecCCCcccCeEECCCCCEEE
Confidence 344 566667 333332 222 11233455678999999998
Q ss_pred EEeCC---CcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEEC-C-----CcEEEE
Q 000055 2471 TGSKD---GDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG-D-----GSVKLI 2539 (2548)
Q Consensus 2471 SGS~D---GtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~-D-----GtIrIW 2539 (2548)
..+.+ ..|.+||+.++.. ..+. .++ . +....|+||| |+..+. . ..+.+.
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~-~~lt-------------~~~--~----~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGE-RILT-------------SGF--L----VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred EEEcCCCceEEEEEECCCCce-Eecc-------------CCC--C----CCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 77653 3688889865543 3231 111 1 2344899999 443332 2 257788
Q ss_pred ECCCCc
Q 000055 2540 QLEDYQ 2545 (2548)
Q Consensus 2540 DL~sg~ 2545 (2548)
+++++.
T Consensus 410 dl~g~~ 415 (435)
T PRK05137 410 DLTGRN 415 (435)
T ss_pred ECCCCc
Confidence 887653
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=1.5e-06 Score=112.79 Aligned_cols=201 Identities=14% Similarity=0.167 Sum_probs=121.9
Q ss_pred EEEEEEcCCCCEEEEEEC---CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCCcEEE
Q 000055 2222 TRAFSSHPLRPFFLVGSS---NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~---DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DGtVrV 2297 (2548)
+.+.+|+|||+.|+..+. ...|.+||+.+++.... .... +.+...+|+|||+.++ +.+.+|...+
T Consensus 198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~----------g~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFK----------GSNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCC----------CCccceEECCCCCEEEEEEccCCCceE
Confidence 467899999999987653 24699999998865432 2111 4466889999999887 5678888787
Q ss_pred EEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000055 2298 WQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
|.++..... .. .+..+.... ..|+|||+.++.++ ..++...||.+....+. ...+..+........|+
T Consensus 267 y~~d~~~~~-~~------~lt~~~~~~~~~~wSpDG~~l~f~s--~~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~S 336 (427)
T PRK02889 267 YTVNADGSG-LR------RLTQSSGIDTEPFFSPDGRSIYFTS--DRGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRIS 336 (427)
T ss_pred EEEECCCCC-cE------ECCCCCCCCcCeEEcCCCCEEEEEe--cCCCCcEEEEEECCCCc-eEEEecCCCCcCceEEC
Confidence 776432110 11 122222111 24999999888764 24566777766432222 22222223344567899
Q ss_pred cCCCCCCCCCCEEEEEeCCC---cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000055 2376 DNDLGSGSVSPLIVTGGKGG---DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DG---tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
|+ ++.|+..+.++ .|.+||+ .+++..... .+
T Consensus 337 pD-------G~~Ia~~s~~~g~~~I~v~d~---~~g~~~~lt------------------------------------~~ 370 (427)
T PRK02889 337 PD-------GKLLAYISRVGGAFKLYVQDL---ATGQVTALT------------------------------------DT 370 (427)
T ss_pred CC-------CCEEEEEEccCCcEEEEEEEC---CCCCeEEcc------------------------------------CC
Confidence 98 77887766554 6999994 444432111 11
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCcEEEEe
Q 000055 2453 HLGSVTRISTVPNTSLFLTGSKDG---DVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DG---tIrIWDl~Tgell~tL 2492 (2548)
.......|+|+|+.|+.++.++ .+.+.++ +|+....+
T Consensus 371 --~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l 410 (427)
T PRK02889 371 --TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRL 410 (427)
T ss_pred --CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEe
Confidence 1224578999999988887644 3455555 35444433
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.64 E-value=1.2e-06 Score=102.21 Aligned_cols=160 Identities=13% Similarity=0.260 Sum_probs=107.1
Q ss_pred EEEEEEEcCCCCEEEEEEC----------CCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE
Q 000055 2221 STRAFSSHPLRPFFLVGSS----------NTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA 2289 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~----------DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG 2289 (2548)
.-..+.|+|+|.+|+.-.. -|...||.++. +.....+.. ...+.|.+++|+|+|+.|++.
T Consensus 7 ~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l---------~~~~~I~~~~WsP~g~~favi 77 (194)
T PF08662_consen 7 DDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL---------KKEGPIHDVAWSPNGNEFAVI 77 (194)
T ss_pred ceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec---------cCCCceEEEEECcCCCEEEEE
Confidence 3478899999998885322 23455666532 223333221 112569999999999987655
Q ss_pred --eCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC
Q 000055 2290 --ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367 (2548)
Q Consensus 2290 --S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~ 2367 (2548)
..++.|.+||++ ++.+ ..+......-..|+|+|++++++|.....|.|.+||++. .+.+... +..
T Consensus 78 ~g~~~~~v~lyd~~-~~~i--------~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--~~~i~~~--~~~ 144 (194)
T PF08662_consen 78 YGSMPAKVTLYDVK-GKKI--------FSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK--KKKISTF--EHS 144 (194)
T ss_pred EccCCcccEEEcCc-ccEe--------EeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC--CEEeecc--ccC
Confidence 456899999997 3211 113222222346999999999998544567899999974 4455444 334
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeC------CCcEEEEeCCccccCceeee
Q 000055 2368 GARSISVFDNDLGSGSVSPLIVTGGK------GGDVGIHDFRYIATGKTKKH 2413 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~------DGtVrLWDLR~l~TGk~l~t 2413 (2548)
.++.++|+|+ |++++++.. |+.++||++ .|+.+..
T Consensus 145 ~~t~~~WsPd-------Gr~~~ta~t~~r~~~dng~~Iw~~----~G~~l~~ 185 (194)
T PF08662_consen 145 DATDVEWSPD-------GRYLATATTSPRLRVDNGFKIWSF----QGRLLYK 185 (194)
T ss_pred cEEEEEEcCC-------CCEEEEEEeccceeccccEEEEEe----cCeEeEe
Confidence 5899999999 889888874 789999994 3555544
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=3.7e-06 Score=101.43 Aligned_cols=240 Identities=12% Similarity=0.133 Sum_probs=154.8
Q ss_pred cCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcE
Q 000055 2217 VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTV 2295 (2548)
Q Consensus 2217 l~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtV 2295 (2548)
...+.++.++||+.-.-+|++..|-+|++||-.. .....++.. ....|++++|-|. +..|+.|+. +-|
T Consensus 96 ws~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~---------sQrnvtclawRPlsaselavgCr-~gI 164 (445)
T KOG2139|consen 96 WSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSV---------SQRNVTCLAWRPLSASELAVGCR-AGI 164 (445)
T ss_pred hhhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecch---------hhcceeEEEeccCCcceeeeeec-cee
Confidence 3445589999999877888999999999999765 444444321 2367999999995 556677665 557
Q ss_pred EEEEcCCCccccc--c--cC--ccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC
Q 000055 2296 CTWQLEVGGRSNV--R--PM--ESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367 (2548)
Q Consensus 2296 rVWDl~tgk~i~i--~--p~--~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~ 2367 (2548)
.+|.......... . .. .......+| ..|.+ +.+||..++++.. .|..|.|||..++...++. ..-.+
T Consensus 165 ciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~--gsssi~iWdpdtg~~~pL~--~~glg 239 (445)
T KOG2139|consen 165 CIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASF--GSSSIMIWDPDTGQKIPLI--PKGLG 239 (445)
T ss_pred EEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeeccc--CcceEEEEcCCCCCccccc--ccCCC
Confidence 8998753321110 0 00 011223455 45654 8999999999874 6899999999874333333 33467
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceE
Q 000055 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGML 2446 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~I 2446 (2548)
++.-+.|+|+ +.+|..+.-|+..++|...+.-+ +.+-. ..........++|+|+. +....+.-++
T Consensus 240 g~slLkwSPd-------gd~lfaAt~davfrlw~e~q~wt--~erw~-----lgsgrvqtacWspcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 240 GFSLLKWSPD-------GDVLFAATCDAVFRLWQENQSWT--KERWI-----LGSGRVQTACWSPCGSFLLFACSGSPRL 305 (445)
T ss_pred ceeeEEEcCC-------CCEEEEecccceeeeehhcccce--eccee-----ccCCceeeeeecCCCCEEEEEEcCCceE
Confidence 8999999999 78999999999999996422111 11111 11113455667888776 1122222222
Q ss_pred EE------------------------c-----ccC---CCCCEEEEEEeCCCCEEEEEeCCC--------cEEEEECCCC
Q 000055 2447 WY------------------------I-----PKA---HLGSVTRISTVPNTSLFLTGSKDG--------DVKLWDAKAA 2486 (2548)
Q Consensus 2447 wd------------------------i-----~~g---H~~~VtsLafSPdG~~LaSGS~DG--------tIrIWDl~Tg 2486 (2548)
+. + ..+ -.+.+.+++|+|.|.+||+.-..+ .|.+||.+..
T Consensus 306 ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 306 YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 21 1 011 245788999999999999875533 3667887643
No 233
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=1e-06 Score=110.64 Aligned_cols=248 Identities=13% Similarity=0.112 Sum_probs=158.8
Q ss_pred EEEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000055 2222 TRAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+..+..+|||+|++ ||..-..|++||+.+-..... .+- -...|.-.-.+.|-..++--..|.+|-+..-
T Consensus 54 st~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE--Rhl--------Dae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE--RHL--------DAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred cceeEecCCCcEEEEecccCCceEEEEcccceeeee--ecc--------cccceeEEEeccchhhheEeecCceeeehhh
Confidence 56788889999876 688889999999886543211 100 1144555555556566666677777755432
Q ss_pred CCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000055 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
- |....++ ++....++..-.|...++++| ....|+=.++.. +..+..+....+.++++..++-
T Consensus 124 ~-G~hy~~R-------IP~~GRDm~y~~~scDly~~g----sg~evYRlNLEq--GrfL~P~~~~~~~lN~v~in~~--- 186 (703)
T KOG2321|consen 124 Y-GRHYRTR-------IPKFGRDMKYHKPSCDLYLVG----SGSEVYRLNLEQ--GRFLNPFETDSGELNVVSINEE--- 186 (703)
T ss_pred c-Ceeeeee-------cCcCCccccccCCCccEEEee----cCcceEEEEccc--cccccccccccccceeeeecCc---
Confidence 1 2111111 222233344344566666665 345677777765 6777778777899999999988
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000055 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
..+|++|+.||.|..||.|. ...+..+.. ... +.-.| .......|+++
T Consensus 187 ----hgLla~Gt~~g~VEfwDpR~---ksrv~~l~~---~~~-----v~s~p-----------------g~~~~~svTal 234 (703)
T KOG2321|consen 187 ----HGLLACGTEDGVVEFWDPRD---KSRVGTLDA---ASS-----VNSHP-----------------GGDAAPSVTAL 234 (703)
T ss_pred ----cceEEecccCceEEEecchh---hhhheeeec---ccc-----cCCCc-----------------cccccCcceEE
Confidence 46999999999999999764 222222200 000 00000 01123469999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEE
Q 000055 2461 STVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVK 2537 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIr 2537 (2548)
.|+.+|-.+++|..+|.|.|||+++.+++.. ..|++.+ .|..+.|.+.+ -+...+...++
T Consensus 235 ~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~---------------kdh~~e~--pi~~l~~~~~~~q~~v~S~Dk~~~k 297 (703)
T KOG2321|consen 235 KFRDDGLHVAVGTSTGSVLIYDLRASKPLLV---------------KDHGYEL--PIKKLDWQDTDQQNKVVSMDKRILK 297 (703)
T ss_pred EecCCceeEEeeccCCcEEEEEcccCCceee---------------cccCCcc--ceeeecccccCCCceEEecchHHhh
Confidence 9999999999999999999999999888752 3444433 45677887764 33334567899
Q ss_pred EEECCCCc
Q 000055 2538 LIQLEDYQ 2545 (2548)
Q Consensus 2538 IWDL~sg~ 2545 (2548)
|||-.+|.
T Consensus 298 iWd~~~Gk 305 (703)
T KOG2321|consen 298 IWDECTGK 305 (703)
T ss_pred hcccccCC
Confidence 99987764
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.63 E-value=3.1e-06 Score=109.97 Aligned_cols=217 Identities=14% Similarity=0.133 Sum_probs=131.8
Q ss_pred CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---CcEEEEEcCCCcccccccCccceec
Q 000055 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---GTVCTWQLEVGGRSNVRPMESCLCF 2317 (2548)
Q Consensus 2241 GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---GtVrVWDl~tgk~i~i~p~~s~~t~ 2317 (2548)
..|.+||.+.... ..+.. +...+.+.+|+|||+.|+.++.+ ..|.+||+.++....+. .+
T Consensus 184 ~~l~i~D~~g~~~-~~lt~----------~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~------~~ 246 (433)
T PRK04922 184 YALQVADSDGYNP-QTILR----------SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA------SF 246 (433)
T ss_pred EEEEEECCCCCCc-eEeec----------CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec------cC
Confidence 4688899764432 23221 23678999999999999988744 46999999877532211 12
Q ss_pred cCCcccEEEEcCCCCEEEEEeccCCCC--eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-CC
Q 000055 2318 SSHAMDVSYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG-KG 2394 (2548)
Q Consensus 2318 ~gH~~~V~afSpdGslLATgG~SS~DG--tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~D 2394 (2548)
.++.. ...|+|||+.++... +.++ .|.+||+.. + .+..+..+........|+|+ ++.|+.++ .+
T Consensus 247 ~g~~~-~~~~SpDG~~l~~~~--s~~g~~~Iy~~d~~~--g-~~~~lt~~~~~~~~~~~spD-------G~~l~f~sd~~ 313 (433)
T PRK04922 247 RGING-APSFSPDGRRLALTL--SRDGNPEIYVMDLGS--R-QLTRLTNHFGIDTEPTWAPD-------GKSIYFTSDRG 313 (433)
T ss_pred CCCcc-CceECCCCCEEEEEE--eCCCCceEEEEECCC--C-CeEECccCCCCccceEECCC-------CCEEEEEECCC
Confidence 22221 235899999876543 2344 699999875 2 23445556556678899998 66666555 45
Q ss_pred CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeC
Q 000055 2395 GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK 2474 (2548)
Q Consensus 2395 GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~ 2474 (2548)
|...+|.+. +.+++..+.. .+.......+|+|+|++++..+.
T Consensus 314 g~~~iy~~d-l~~g~~~~lt-------------------------------------~~g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 314 GRPQIYRVA-ASGGSAERLT-------------------------------------FQGNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred CCceEEEEE-CCCCCeEEee-------------------------------------cCCCCccCEEECCCCCEEEEEEC
Confidence 654444422 3333322111 11122346789999999987654
Q ss_pred CC---cEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEEC---CCcEEEEECCCCc
Q 000055 2475 DG---DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG---DGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2475 DG---tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~---DGtIrIWDL~sg~ 2545 (2548)
++ .|.+||+.+++.. .+. .++ .. ....|+||| ++..+. .+.|.+++++++.
T Consensus 356 ~~~~~~I~v~d~~~g~~~-~Lt-------------~~~--~~----~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVR-TLT-------------PGS--LD----ESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CCCceeEEEEECCCCCeE-ECC-------------CCC--CC----CCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 43 6999999888765 231 111 11 234799999 444433 3467888886653
No 235
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.62 E-value=6.4e-07 Score=105.75 Aligned_cols=233 Identities=18% Similarity=0.226 Sum_probs=149.5
Q ss_pred CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc---CCC-EEEEEeCCCcEEEEEcCCCccc-ccccCcc
Q 000055 2239 SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH---YGH-RFASAALDGTVCTWQLEVGGRS-NVRPMES 2313 (2548)
Q Consensus 2239 ~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP---dG~-~LaSGS~DGtVrVWDl~tgk~i-~i~p~~s 2313 (2548)
..|.+.+|++...+... +..++.. ....+..|.|.. +|. .++-+..+|.|.++........ ...+...
T Consensus 44 R~Gkl~Lys~~d~~~~~-l~~~q~~------dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~ 116 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSP-LDTLQCT------DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS 116 (339)
T ss_pred eccceEEEeecccccCc-cceeeee------cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch
Confidence 45778888887655443 1111111 126688888864 455 5677788899999987543211 1111110
Q ss_pred ceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC
Q 000055 2314 CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGK 2393 (2548)
Q Consensus 2314 ~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~ 2393 (2548)
+.+.....--..|++.+..++++. .+|.+.+-+.....-+.++..+.|.-.++...|+..+ .+++.+||.
T Consensus 117 -~ki~~~~~lslD~~~~~~~i~vs~---s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~------pnlvytGgD 186 (339)
T KOG0280|consen 117 -KKISVVEALSLDISTSGTKIFVSD---SRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE------PNLVYTGGD 186 (339)
T ss_pred -hhhhheeeeEEEeeccCceEEEEc---CCCcEEEEecceeeeeecccccccceeeeeeecccCC------CceEEecCC
Confidence 001111111123778888888875 6788875554433345567889999999999998875 679999999
Q ss_pred CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC-CCCEEEEE
Q 000055 2394 GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP-NTSLFLTG 2472 (2548)
Q Consensus 2394 DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP-dG~~LaSG 2472 (2548)
||.+..||+|. . ++. +|.-.+.|...|.++.-+| .+.+++||
T Consensus 187 D~~l~~~D~R~-p-~~~-----------------------------------i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 187 DGSLSCWDIRI-P-KTF-----------------------------------IWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred CceEEEEEecC-C-cce-----------------------------------eeecceeeecceEEEecCCCCCceEEEe
Confidence 99999999872 1 122 2332367999999999887 58899999
Q ss_pred eCCCcEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCC
Q 000055 2473 SKDGDVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2473 S~DGtIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
+.|-.|++||.++ ++++..- .+..+|+.+.++|.- ++.+..-.-.+|-+.+++
T Consensus 230 sYDe~i~~~DtRnm~kPl~~~-------------------~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLFKA-------------------KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred ccccceeeeehhcccCccccC-------------------ccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 9999999999984 6665421 122568888888865 233333333455554443
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.59 E-value=3.4e-06 Score=109.59 Aligned_cols=197 Identities=16% Similarity=0.135 Sum_probs=121.5
Q ss_pred EEEEEEcCCCCEEEEEEC---CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCC--cE
Q 000055 2222 TRAFSSHPLRPFFLVGSS---NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDG--TV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~---DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DG--tV 2295 (2548)
+...+|+|+|+.|+..+. +..|++||+.+++.... ... .+...+.+|+|+|+.++ +.+.+| .|
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~----------~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASF----------RGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccC----------CCCccCceECCCCCEEEEEEeCCCCceE
Confidence 577889999999997653 34699999988765322 111 13345789999999775 456666 58
Q ss_pred EEEEcCCCcccccccCccceeccCCccc--EEEEcCCCCEEEEEeccCCCCe--EEEEECCCCCCCcceeeeccCCCeEE
Q 000055 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMD--VSYITSSGSVIAAAGHSSNGIN--VVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~--V~afSpdGslLATgG~SS~DGt--VrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.+||+.+++... +..+... -..|+|||+.++.+. ..++. |.++|+.. ++ ...+..+......
T Consensus 275 y~~d~~~g~~~~---------lt~~~~~~~~~~~spDG~~l~f~s--d~~g~~~iy~~dl~~--g~-~~~lt~~g~~~~~ 340 (433)
T PRK04922 275 YVMDLGSRQLTR---------LTNHFGIDTEPTWAPDGKSIYFTS--DRGGRPQIYRVAASG--GS-AERLTFQGNYNAR 340 (433)
T ss_pred EEEECCCCCeEE---------CccCCCCccceEECCCCCEEEEEE--CCCCCceEEEEECCC--CC-eEEeecCCCCccC
Confidence 889998765322 1222211 125899999888764 23444 55556543 22 2233333344557
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCC---cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEE
Q 000055 2372 ISVFDNDLGSGSVSPLIVTGGKGG---DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY 2448 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DG---tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwd 2448 (2548)
.+|+|+ ++.++..+.++ .|.+||+ .+++.. .+
T Consensus 341 ~~~SpD-------G~~Ia~~~~~~~~~~I~v~d~---~~g~~~-~L---------------------------------- 375 (433)
T PRK04922 341 ASVSPD-------GKKIAMVHGSGGQYRIAVMDL---STGSVR-TL---------------------------------- 375 (433)
T ss_pred EEECCC-------CCEEEEEECCCCceeEEEEEC---CCCCeE-EC----------------------------------
Confidence 899998 67777654433 6899994 444432 22
Q ss_pred cccCCCCCEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCcEEEEe
Q 000055 2449 IPKAHLGSVTRISTVPNTSLFLTGSKD---GDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2449 i~~gH~~~VtsLafSPdG~~LaSGS~D---GtIrIWDl~Tgell~tL 2492 (2548)
. +........|+|+|++++..+.+ +.|.++|+. |.....+
T Consensus 376 --t-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l 418 (433)
T PRK04922 376 --T-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRL 418 (433)
T ss_pred --C-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEc
Confidence 0 11122346899999988777653 367788875 4444433
No 237
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.57 E-value=6.2e-07 Score=112.00 Aligned_cols=150 Identities=17% Similarity=0.253 Sum_probs=98.1
Q ss_pred ccCCCCccCCeEEEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEE--ccCCCEE
Q 000055 2210 YVDPPATVENISTRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQF--DHYGHRF 2286 (2548)
Q Consensus 2210 ~v~p~~tl~gV~V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaF--SPdG~~L 2286 (2548)
.+...+.+..-.+.|+.|-|.++ .++++-.+|.+++||.... ...+.-.| .+++..+
T Consensus 210 lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~--------------------~~~t~p~~~~~k~~~~f 269 (636)
T KOG2394|consen 210 LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV--------------------CGATAPSYQALKDGDQF 269 (636)
T ss_pred hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc--------------------ccCCCCcccccCCCCee
Confidence 33444455555689999999655 5556788999999986210 11111112 2244444
Q ss_pred EEEeCC-----CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee
Q 000055 2287 ASAALD-----GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS 2361 (2548)
Q Consensus 2287 aSGS~D-----GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s 2361 (2548)
.....- .-|.-|.+. .+.... .+|+|||+++|+.+ .||.++|+|..+ .+.+..
T Consensus 270 ~i~t~ksk~~rNPv~~w~~~----------------~g~in~-f~FS~DG~~LA~VS---qDGfLRvF~fdt--~eLlg~ 327 (636)
T KOG2394|consen 270 AILTSKSKKTRNPVARWHIG----------------EGSINE-FAFSPDGKYLATVS---QDGFLRIFDFDT--QELLGV 327 (636)
T ss_pred EEeeeeccccCCccceeEec----------------cccccc-eeEcCCCceEEEEe---cCceEEEeeccH--HHHHHH
Confidence 332111 112222222 111111 25889999999996 999999999976 455666
Q ss_pred eeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCcee
Q 000055 2362 ITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTK 2411 (2548)
Q Consensus 2362 l~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l 2411 (2548)
++..-++..|++|+|+ +++|++||.|.-|.||.+ ...+.+
T Consensus 328 mkSYFGGLLCvcWSPD-------GKyIvtGGEDDLVtVwSf---~erRVV 367 (636)
T KOG2394|consen 328 MKSYFGGLLCVCWSPD-------GKYIVTGGEDDLVTVWSF---EERRVV 367 (636)
T ss_pred HHhhccceEEEEEcCC-------ccEEEecCCcceEEEEEe---ccceEE
Confidence 7677789999999999 899999999999999994 444444
No 238
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.56 E-value=1.4e-05 Score=101.75 Aligned_cols=280 Identities=13% Similarity=0.105 Sum_probs=153.1
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEEcC
Q 000055 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCTWQLE 2301 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtVrVWDl~ 2301 (2548)
..+.|+|||+++.+.+.||.|.++|+.+++.+.+++. .....++++++||++++++. .++.+.++|.+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-----------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-----------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----------CCCcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence 4567889999999999999999999999999988864 14578899999999998775 67999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+.+.+...+.... .......++.+ .++....++.+- -+.+.|.+-|.... ..................|.|+
T Consensus 109 tle~v~~I~~~~~-~~~~~~~Rv~aIv~s~~~~~fVv~l--kd~~~I~vVdy~d~-~~~~~~~i~~g~~~~D~~~dpd-- 182 (369)
T PF02239_consen 109 TLEPVKTIPTGGM-PVDGPESRVAAIVASPGRPEFVVNL--KDTGEIWVVDYSDP-KNLKVTTIKVGRFPHDGGFDPD-- 182 (369)
T ss_dssp T--EEEEEE--EE--TTTS---EEEEEE-SSSSEEEEEE--TTTTEEEEEETTTS-SCEEEEEEE--TTEEEEEE-TT--
T ss_pred cccceeecccccc-cccccCCCceeEEecCCCCEEEEEE--ccCCeEEEEEeccc-cccceeeecccccccccccCcc--
Confidence 8765443221110 01113334443 356666444432 14577777787653 2222222233456778888988
Q ss_pred CCCCCCCEEEE-EeCCCcEEEEeCCccccCceeeeecCCCCCCC------ccc-cccccCCC--CCC--ccCCCCCc---
Q 000055 2380 GSGSVSPLIVT-GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS------INT-CAHADAQT--GSG--SKPGDQNG--- 2444 (2548)
Q Consensus 2380 g~gs~g~lLVS-GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~------~~~-~~vafSpd--Gk~--v~s~D~sv--- 2444 (2548)
+++++. ...++.|-++| .++++.+..+........ +.. ....|... +.. ...+...+
T Consensus 183 -----gry~~va~~~sn~i~viD---~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 183 -----GRYFLVAANGSNKIAVID---TKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp -----SSEEEEEEGGGTEEEEEE---TTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred -----cceeeecccccceeEEEe---eccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence 666555 45677999999 445555443311100000 000 00011111 111 01111112
Q ss_pred -----eEEEcccCCCCCEEEEEEeCCCCEEEEE----eCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceee
Q 000055 2445 -----MLWYIPKAHLGSVTRISTVPNTSLFLTG----SKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2445 -----~Iwdi~~gH~~~VtsLafSPdG~~LaSG----S~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
++........++ .-+..+|+++++.+. ...++|.++|.++.+.+.++. .+-+ .
T Consensus 255 d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~-------------~~~~----~ 316 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT-------------PGPG----K 316 (369)
T ss_dssp TTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH-------------HHHT-----
T ss_pred hhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe-------------ccCC----C
Confidence 222222333444 678889999999988 445899999999998887762 0111 1
Q ss_pred cEEEEEEcCCe---EEEEECCC-cEEEEECCCCc
Q 000055 2516 GVTDIQVVSRG---FLSCGGDG-SVKLIQLEDYQ 2545 (2548)
Q Consensus 2516 ~VtsLafSPdG---LaSGS~DG-tIrIWDL~sg~ 2545 (2548)
.+..+.|+++| .+|.-.++ .|.+||..+..
T Consensus 317 ~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 317 RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp -EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred cEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 15677999999 45555444 89999988753
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=1e-05 Score=105.33 Aligned_cols=196 Identities=15% Similarity=0.104 Sum_probs=122.9
Q ss_pred EEEEEEcCCCCEEEEEE---CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCCc--E
Q 000055 2222 TRAFSSHPLRPFFLVGS---SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGT--V 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS---~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DGt--V 2295 (2548)
+...+|+|||+.|+..+ .+..|.+||+.+++... +.. +.+.+...+|+|||+.++ +.+.+|. |
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~----------~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGN----------FPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eec----------CCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 68899999999988764 35689999998876532 221 225677889999999875 5566665 6
Q ss_pred EEEEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000055 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
.+||++++.... +..+.... ..|+|||+.++.+.....+..|.++|+.. .....+..+.+.+....
T Consensus 273 y~~d~~~~~~~~---------Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g---~~~~~lt~~~~~~~~~~ 340 (435)
T PRK05137 273 YTMDLRSGTTTR---------LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG---SNPRRISFGGGRYSTPV 340 (435)
T ss_pred EEEECCCCceEE---------ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC---CCeEEeecCCCcccCeE
Confidence 666877664321 22222212 35899999888764211123677788754 23344444455677788
Q ss_pred EccCCCCCCCCCCEEEEEeCC---CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000055 2374 VFDNDLGSGSVSPLIVTGGKG---GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~D---GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
|+|+ ++.|+..+.+ ..|.+||+ ..+. .+.+
T Consensus 341 ~Spd-------G~~ia~~~~~~~~~~i~~~d~---~~~~-~~~l------------------------------------ 373 (435)
T PRK05137 341 WSPR-------GDLIAFTKQGGGQFSIGVMKP---DGSG-ERIL------------------------------------ 373 (435)
T ss_pred ECCC-------CCEEEEEEcCCCceEEEEEEC---CCCc-eEec------------------------------------
Confidence 9998 6777765543 25777773 2222 1221
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCC------CcEEEEECCCCcE
Q 000055 2451 KAHLGSVTRISTVPNTSLFLTGSKD------GDVKLWDAKAAQL 2488 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~D------GtIrIWDl~Tgel 2488 (2548)
. ....+....|+|||+.|+..+.+ ..+.+.|+..+..
T Consensus 374 t-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 374 T-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred c-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 0 11134567899999988766543 2577888865544
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.51 E-value=1.3e-06 Score=116.46 Aligned_cols=190 Identities=15% Similarity=0.194 Sum_probs=142.3
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccc
Q 000055 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNV 2308 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i 2308 (2548)
-+...++.+..++.+.+||...+.....+..-. ..-.....-+.++++.-++++|+.-+.|.+|+.....
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e------r~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn---- 166 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE------RCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN---- 166 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCc------eEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC----
Confidence 345678888999999999988776554432100 0001123334456677789999999999999987221
Q ss_pred ccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCC
Q 000055 2309 RPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSP 2386 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~ 2386 (2548)
.+. .+.+|.+.+.. ++.||+++++++ +|+++++|++.+.. ......-+|+..|+.+.++|.
T Consensus 167 ~p~----~l~GHeG~iF~i~~s~dg~~i~s~S---dDRsiRlW~i~s~~-~~~~~~fgHsaRvw~~~~~~n--------- 229 (967)
T KOG0974|consen 167 KPI----RLKGHEGSIFSIVTSLDGRYIASVS---DDRSIRLWPIDSRE-VLGCTGFGHSARVWACCFLPN--------- 229 (967)
T ss_pred Ccc----eecccCCceEEEEEccCCcEEEEEe---cCcceeeeeccccc-ccCcccccccceeEEEEeccc---------
Confidence 111 37899999886 677999999994 99999999998732 222355589999999999987
Q ss_pred EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC-CCEEEEEEeCC
Q 000055 2387 LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL-GSVTRISTVPN 2465 (2548)
Q Consensus 2387 lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~-~~VtsLafSPd 2465 (2548)
.++|++.|-+.++|+.. +.. |..+.+|. ..|..++.+++
T Consensus 230 ~i~t~gedctcrvW~~~----~~~------------------------------------l~~y~~h~g~~iw~~~~~~~ 269 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVN----GTQ------------------------------------LEVYDEHSGKGIWKIAVPIG 269 (967)
T ss_pred eeEEeccceEEEEEecc----cce------------------------------------ehhhhhhhhcceeEEEEcCC
Confidence 99999999999999732 222 22235665 47999999999
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 000055 2466 TSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2466 G~~LaSGS~DGtIrIWDl~T 2485 (2548)
....+|++.||.+++||+..
T Consensus 270 ~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 270 VIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceEEEeeccCcchhhhhhhc
Confidence 99999999999999999864
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.49 E-value=2.9e-05 Score=99.80 Aligned_cols=181 Identities=15% Similarity=0.186 Sum_probs=111.3
Q ss_pred CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---CcEEEEEcCCCcccccccCcccee
Q 000055 2240 NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---GTVCTWQLEVGGRSNVRPMESCLC 2316 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---GtVrVWDl~tgk~i~i~p~~s~~t 2316 (2548)
...|.++|...+.. ..+.. +...+.+.+|+|+|++++.+..+ ..|.+||+.+++..... .
T Consensus 169 ~~~l~~~d~~g~~~-~~l~~----------~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~------~ 231 (417)
T TIGR02800 169 RYELQVADYDGANP-QTITR----------SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA------S 231 (417)
T ss_pred cceEEEEcCCCCCC-EEeec----------CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee------c
Confidence 34577888754332 22211 22568889999999999987654 47999999877532211 1
Q ss_pred ccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-CCC
Q 000055 2317 FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG-KGG 2395 (2548)
Q Consensus 2317 ~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~DG 2395 (2548)
+.+.... ..|+|+|+.|+.......+..|.+||+.++ ....+..+........|+|+ ++.|+..+ .+|
T Consensus 232 ~~~~~~~-~~~spDg~~l~~~~~~~~~~~i~~~d~~~~---~~~~l~~~~~~~~~~~~s~d-------g~~l~~~s~~~g 300 (417)
T TIGR02800 232 FPGMNGA-PAFSPDGSKLAVSLSKDGNPDIYVMDLDGK---QLTRLTNGPGIDTEPSWSPD-------GKSIAFTSDRGG 300 (417)
T ss_pred CCCCccc-eEECCCCCEEEEEECCCCCccEEEEECCCC---CEEECCCCCCCCCCEEECCC-------CCEEEEEECCCC
Confidence 2222211 358999997775431112345888888652 23344445555567788887 66666554 344
Q ss_pred --cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEe
Q 000055 2396 --DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGS 2473 (2548)
Q Consensus 2396 --tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS 2473 (2548)
.|.++|+ .+++.. .+ ..+...+....|+|+|++++.++
T Consensus 301 ~~~iy~~d~---~~~~~~-~l------------------------------------~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 301 SPQIYMMDA---DGGEVR-RL------------------------------------TFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred CceEEEEEC---CCCCEE-Ee------------------------------------ecCCCCccCeEECCCCCEEEEEE
Confidence 4666663 333321 11 11234456788999999999888
Q ss_pred CCC---cEEEEECCCCcE
Q 000055 2474 KDG---DVKLWDAKAAQL 2488 (2548)
Q Consensus 2474 ~DG---tIrIWDl~Tgel 2488 (2548)
.++ .|.+||+.++..
T Consensus 341 ~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGE 358 (417)
T ss_pred ccCCceEEEEEeCCCCCe
Confidence 876 889999987654
No 242
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.46 E-value=5.2e-07 Score=115.01 Aligned_cols=151 Identities=23% Similarity=0.421 Sum_probs=106.7
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcCCCcc
Q 000055 2229 PLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGR 2305 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~tgk~ 2305 (2548)
|..++-++........+|++.... .+.-+ + .+|..+|+++.|+|+ ...+++++.|-.|..||+++..
T Consensus 79 ~a~~~wiVsts~qkaiiwnlA~ss~~aIef~--l-------hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~- 148 (1081)
T KOG0309|consen 79 PAKPYWIVSTSNQKAIIWNLAKSSSNAIEFV--L-------HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH- 148 (1081)
T ss_pred CCCceeEEecCcchhhhhhhhcCCccceEEE--E-------ecCccceeccccCCCCCcceeeccccccceeeeccCCC-
Confidence 344455554445556688887432 22221 1 236689999999995 5688999999999999998664
Q ss_pred cccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCC
Q 000055 2306 SNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVS 2385 (2548)
Q Consensus 2306 i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g 2385 (2548)
.|+............|.+--.+++.+|+. ..+.|.+||.+.+ +.++..+++|...|+++.|+... .
T Consensus 149 ---~p~ys~~~w~s~asqVkwnyk~p~vlass----hg~~i~vwd~r~g-s~pl~s~K~~vs~vn~~~fnr~~------~ 214 (1081)
T KOG0309|consen 149 ---RPFYSTSSWRSAASQVKWNYKDPNVLASS----HGNDIFVWDLRKG-STPLCSLKGHVSSVNSIDFNRFK------Y 214 (1081)
T ss_pred ---cceeeeecccccCceeeecccCcchhhhc----cCCceEEEeccCC-CcceEEecccceeeehHHHhhhh------h
Confidence 33322222333333444323466777774 7889999999974 67889999999999999988763 5
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 000055 2386 PLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2386 ~lLVSGS~DGtVrLWDLR 2403 (2548)
..+.+++.||+|+.||..
T Consensus 215 s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 215 SEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred hhhcccCCCCceeeeccc
Confidence 588999999999999954
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.42 E-value=6.3e-06 Score=105.06 Aligned_cols=212 Identities=14% Similarity=0.184 Sum_probs=140.2
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcc-cc
Q 000055 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGR-SN 2307 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~-i~ 2307 (2548)
|.+.|+|....||.+++||..+++....|.- ...-.+..++..| .+..+.. .+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p-------~~~~s~t~~~~~w-------------------~L~~~~s~~k 56 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAP-------IASLSGTCTYTKW-------------------GLSADYSPMK 56 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeecc-------chhccCcceeEEE-------------------EEEeccchHH
Confidence 4567899999999999999999887766632 1111233444444 3221110 00
Q ss_pred cccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee--ccCCCeEEEEEccCCCCCCCCC
Q 000055 2308 VRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT--CHEGGARSISVFDNDLGSGSVS 2385 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~--gHs~~VtSLafsP~dlg~gs~g 2385 (2548)
.. +.. ...--+.+...++-|. ..|.|.++++.. ++....+. +|.+.|+++.++.+ -
T Consensus 57 ~~------~~~----~~~~~s~~t~~lvlgt---~~g~v~~ys~~~--g~it~~~st~~h~~~v~~~~~~~~-------~ 114 (541)
T KOG4547|consen 57 WL------SLE----KAKKASLDTSMLVLGT---PQGSVLLYSVAG--GEITAKLSTDKHYGNVNEILDAQR-------L 114 (541)
T ss_pred HH------hHH----HHhhccCCceEEEeec---CCccEEEEEecC--CeEEEEEecCCCCCcceeeecccc-------c
Confidence 00 000 0001123444556553 789999999875 44444443 79999999998776 4
Q ss_pred CEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC
Q 000055 2386 PLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN 2465 (2548)
Q Consensus 2386 ~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd 2465 (2548)
..|.|++.|+.+..|+ ...++.++.. .+....+.+++.+||
T Consensus 115 ~ciyS~~ad~~v~~~~---~~~~~~~~~~------------------------------------~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 115 GCIYSVGADLKVVYIL---EKEKVIIRIW------------------------------------KEQKPLVSSLCISPD 155 (541)
T ss_pred CceEecCCceeEEEEe---cccceeeeee------------------------------------ccCCCccceEEEcCC
Confidence 5799999999999999 4444444333 556677889999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCC-e---EEEEECCCcEEEEEC
Q 000055 2466 TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR-G---FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2466 G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd-G---LaSGS~DGtIrIWDL 2541 (2548)
|..+++|+ +.|++||+++++.+.+| .||.+.|++.-....++.. | |.+...+.-|.+|-+
T Consensus 156 ~~~l~~as--~~ik~~~~~~kevv~~f--------------tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 156 GKILLTAS--RQIKVLDIETKEVVITF--------------TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred CCEEEecc--ceEEEEEccCceEEEEe--------------cCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 99999986 68999999999999877 7999877554221122222 3 446667777888887
Q ss_pred CC
Q 000055 2542 ED 2543 (2548)
Q Consensus 2542 ~s 2543 (2548)
+.
T Consensus 220 ~~ 221 (541)
T KOG4547|consen 220 EK 221 (541)
T ss_pred Ec
Confidence 64
No 244
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.38 E-value=1e-05 Score=95.98 Aligned_cols=230 Identities=16% Similarity=0.191 Sum_probs=144.6
Q ss_pred EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCc
Q 000055 2233 FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPME 2312 (2548)
Q Consensus 2233 ~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~ 2312 (2548)
.++-+..+|.|.++..........++.+....+. .....++.|++.+..++++..+|.+.+-+..... .+
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~----~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~------le 156 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKIS----VVEALSLDISTSGTKIFVSDSRGSISGVYETEMV------LE 156 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhh----heeeeEEEeeccCceEEEEcCCCcEEEEecceee------ee
Confidence 4566788899999998766666666554432211 0134678899999999999999999855543321 12
Q ss_pred cceeccCCcccEE--EEc-CCCCEEEEEeccCCCCeEEEEECCCCCCCc-ceeeeccCCCeEEEEEccCCCCCCCCCCEE
Q 000055 2313 SCLCFSSHAMDVS--YIT-SSGSVIAAAGHSSNGINVVVWDTLAPPTSS-RASITCHEGGARSISVFDNDLGSGSVSPLI 2388 (2548)
Q Consensus 2313 s~~t~~gH~~~V~--afS-pdGslLATgG~SS~DGtVrIWDl~t~~~k~-v~sl~gHs~~VtSLafsP~dlg~gs~g~lL 2388 (2548)
..+..+.|...++ .|+ .+.+++.+|| +|+.+..||++.+. +. .+..+.|..+|.+|.-+|.. +.++
T Consensus 157 ~vq~wk~He~E~Wta~f~~~~pnlvytGg---DD~~l~~~D~R~p~-~~i~~n~kvH~~GV~SI~ss~~~------~~~I 226 (339)
T KOG0280|consen 157 KVQTWKVHEFEAWTAKFSDKEPNLVYTGG---DDGSLSCWDIRIPK-TFIWHNSKVHTSGVVSIYSSPPK------PTYI 226 (339)
T ss_pred ecccccccceeeeeeecccCCCceEEecC---CCceEEEEEecCCc-ceeeecceeeecceEEEecCCCC------CceE
Confidence 2345778877665 244 3447888886 99999999999653 44 34477899999999988875 8899
Q ss_pred EEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC---------CCCCC-ccCCCCCce---EEEcccCCCC
Q 000055 2389 VTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA---------QTGSG-SKPGDQNGM---LWYIPKAHLG 2455 (2548)
Q Consensus 2389 VSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS---------pdGk~-v~s~D~sv~---Iwdi~~gH~~ 2455 (2548)
+||+.|-.|++||.|++. +.+..- ..+.....+....+. -+|.. +...++... ...+.+.|.+
T Consensus 227 ~TGsYDe~i~~~DtRnm~--kPl~~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdS 302 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRNMG--KPLFKA--KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDS 302 (339)
T ss_pred EEeccccceeeeehhccc--CccccC--ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccc
Confidence 999999999999998532 222111 001111111111110 11111 112222222 3445567888
Q ss_pred CEEEEEEeCCCCEEEEEeC-CCcEE-EEECCCC
Q 000055 2456 SVTRISTVPNTSLFLTGSK-DGDVK-LWDAKAA 2486 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~-DGtIr-IWDl~Tg 2486 (2548)
-++.-.|+....+|+|++. |..++ +|-.-++
T Consensus 303 l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 303 LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 8888888666677888763 66644 6654443
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=5.2e-05 Score=96.29 Aligned_cols=273 Identities=14% Similarity=0.114 Sum_probs=163.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-----eCCC---
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-----ALDG--- 2293 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-----S~DG--- 2293 (2548)
++.++++++|+++|.+ .+..|+|++..++..+.+... ..++++.|+|.|++|.|= ..|+
T Consensus 37 ~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~------------~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~ 103 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVEL------------KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS 103 (566)
T ss_pred ceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEecc------------ceeeeeeecccccccccccccccccCCCCC
Confidence 5677788999888765 456799999998864444322 368999999999988652 2233
Q ss_pred --cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000055 2294 --TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2294 --tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.+++|+++++...... ......+.+..|+.|..+.+-- ..+.|++||+... ....+. -|..+|+.
T Consensus 104 ~pn~~v~~vet~~~~s~~------q~k~Q~~W~~qfs~dEsl~arl----v~nev~f~~~~~f-~~~~~k--l~~~~i~~ 170 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQI------QKKMQNGWVPQFSIDESLAARL----VSNEVQFYDLGSF-KTIQHK--LSVSGITM 170 (566)
T ss_pred CCceeeeeeccceehhhe------ehhhhcCcccccccchhhhhhh----hcceEEEEecCCc-cceeee--eeccceee
Confidence 5679999885321110 0112222344578787766653 4578999998651 222233 36778888
Q ss_pred EEEccCCCCCCCCCCEEEE-----EeCCCcEEEEeCCcc----------------------ccCceeeeecC--------
Q 000055 2372 ISVFDNDLGSGSVSPLIVT-----GGKGGDVGIHDFRYI----------------------ATGKTKKHKHS-------- 2416 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVS-----GS~DGtVrLWDLR~l----------------------~TGk~l~tl~~-------- 2416 (2548)
+.++|.. ....+++ +|.-+.|+||-.... ..|..+..+..
T Consensus 171 f~lSpgp-----~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~ 245 (566)
T KOG2315|consen 171 LSLSPGP-----EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA 245 (566)
T ss_pred EEecCCC-----CCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc
Confidence 8888762 1333332 344556666664310 00000100000
Q ss_pred -------------C------CCCCCccccccccCCCCCC----ccCCCCCceEEEc-----ccCCCCCEEEEEEeCCCCE
Q 000055 2417 -------------D------RGGSSINTCAHADAQTGSG----SKPGDQNGMLWYI-----PKAHLGSVTRISTVPNTSL 2468 (2548)
Q Consensus 2417 -------------~------~~~s~~~~~~vafSpdGk~----v~s~D~sv~Iwdi-----~~gH~~~VtsLafSPdG~~ 2468 (2548)
. ..........+.|+++|+- .+..-..+.|++. +.--+++=.++-|+|.|++
T Consensus 246 SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNI 325 (566)
T ss_pred cccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCE
Confidence 0 0011111233456666654 2222234555552 2234567788999999999
Q ss_pred EEEEeC---CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEE------CCCcEE
Q 000055 2469 FLTGSK---DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCG------GDGSVK 2537 (2548)
Q Consensus 2469 LaSGS~---DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS------~DGtIr 2537 (2548)
++-+|- -|.|-|||+.+.+++..+. .-. .+-++|+||| |+|+. -|+.++
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~--------------a~~------tt~~eW~PdGe~flTATTaPRlrvdNg~K 385 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRKLIAKFK--------------AAN------TTVFEWSPDGEYFLTATTAPRLRVDNGIK 385 (566)
T ss_pred EEEeecCCCCCceEEEeccchhhccccc--------------cCC------ceEEEEcCCCcEEEEEeccccEEecCCeE
Confidence 998876 5789999999988887662 111 1334899999 66654 389999
Q ss_pred EEECCCCc
Q 000055 2538 LIQLEDYQ 2545 (2548)
Q Consensus 2538 IWDL~sg~ 2545 (2548)
||+..+..
T Consensus 386 iwhytG~~ 393 (566)
T KOG2315|consen 386 IWHYTGSL 393 (566)
T ss_pred EEEecCce
Confidence 99987653
No 246
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.33 E-value=0.00019 Score=90.95 Aligned_cols=260 Identities=13% Similarity=0.163 Sum_probs=153.4
Q ss_pred EEEEEcCCCCEEEEEEC----CCeEEEEEcCCC-ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CCcEE
Q 000055 2223 RAFSSHPLRPFFLVGSS----NTHIYLWEFGKD-KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVC 2296 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~----DGsVrLWDl~tg-~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DGtVr 2296 (2548)
.-++++|++++|.+... +|.|..|++... ..+..+..... .......++++|++++++++.. +|+|.
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-------~g~~p~~i~~~~~g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-------GGSSPCHIAVDPDGRFLYVANYGGGSVS 112 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-------SSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-------CCCCcEEEEEecCCCEEEEEEccCCeEE
Confidence 44667899999888765 579999998864 23333222110 1145678999999999999875 79999
Q ss_pred EEEcCCCcccccccCcc---------ceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc--ceeee-c
Q 000055 2297 TWQLEVGGRSNVRPMES---------CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASIT-C 2364 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s---------~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~--v~sl~-g 2364 (2548)
++++.....+....... ......|...+ .++|+|++++++.. ....|.+|++.....+. ...+. .
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v-~~~pdg~~v~v~dl--G~D~v~~~~~~~~~~~l~~~~~~~~~ 189 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV-VFSPDGRFVYVPDL--GADRVYVYDIDDDTGKLTPVDSIKVP 189 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE-EE-TTSSEEEEEET--TTTEEEEEEE-TTS-TEEEEEEEECS
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeE-EECCCCCEEEEEec--CCCEEEEEEEeCCCceEEEeeccccc
Confidence 99998743222110000 00011222222 38999999988763 45689999997643222 22233 3
Q ss_pred cCCCeEEEEEccCCCCCCCCCCE-EEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000055 2365 HEGGARSISVFDNDLGSGSVSPL-IVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~l-LVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
...+.+.+.|+|+ +++ .++.-.++.|.++++. ...+...... .+...|.+
T Consensus 190 ~G~GPRh~~f~pd-------g~~~Yv~~e~s~~v~v~~~~-~~~g~~~~~~------------~~~~~~~~--------- 240 (345)
T PF10282_consen 190 PGSGPRHLAFSPD-------GKYAYVVNELSNTVSVFDYD-PSDGSLTEIQ------------TISTLPEG--------- 240 (345)
T ss_dssp TTSSEEEEEE-TT-------SSEEEEEETTTTEEEEEEEE-TTTTEEEEEE------------EEESCETT---------
T ss_pred cCCCCcEEEEcCC-------cCEEEEecCCCCcEEEEeec-ccCCceeEEE------------Eeeecccc---------
Confidence 3467899999998 454 4566678899999954 1233221111 00000000
Q ss_pred ceEEEcccCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECC--CCcEE--EEecccccccccccCcccCCCCceeecEE
Q 000055 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTGSK-DGDVKLWDAK--AAQLV--YHWSKLHERHTFLQPSSRGFGGVVRAGVT 2518 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~--Tgell--~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vt 2518 (2548)
.........++++|+|++|+++.. ++.|.+|++. +|++. ..++ ..+ ....
T Consensus 241 -------~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~--------------~~G----~~Pr 295 (345)
T PF10282_consen 241 -------FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP--------------TGG----KFPR 295 (345)
T ss_dssp -------SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE--------------ESS----SSEE
T ss_pred -------ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe--------------CCC----CCcc
Confidence 011236788999999999888764 6789999993 34443 2221 111 1145
Q ss_pred EEEEcCCe--E-EEEECCCcEEEEECC--CCcc
Q 000055 2519 DIQVVSRG--F-LSCGGDGSVKLIQLE--DYQH 2546 (2548)
Q Consensus 2519 sLafSPdG--L-aSGS~DGtIrIWDL~--sg~l 2546 (2548)
.++++|+| | +++-.++.|.+|+++ +|.+
T Consensus 296 ~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 67999999 4 455678899999874 5554
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.29 E-value=8.5e-05 Score=95.54 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=97.9
Q ss_pred EEEEEEcCCCCEEEEEECC---CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE-EeCCC--cE
Q 000055 2222 TRAFSSHPLRPFFLVGSSN---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDG--TV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D---GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS-GS~DG--tV 2295 (2548)
+...+|+|+|++++.++.+ ..|++||+.+++..... . +.+.+.+++|+|+|+.|+. .+.++ .|
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~----------~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-S----------FPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-c----------CCCCccceEECCCCCEEEEEECCCCCccE
Confidence 5677899999999976543 47999999887643321 1 1245667899999987764 45454 58
Q ss_pred EEEEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCC--eEEEEECCCCCCCcceeeeccCCCeEE
Q 000055 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DG--tVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.+||+.++.... +..+.... ..|+|+|+.|+.++. .++ .|.++|+.. ++ ...+..+...+..
T Consensus 261 ~~~d~~~~~~~~---------l~~~~~~~~~~~~s~dg~~l~~~s~--~~g~~~iy~~d~~~--~~-~~~l~~~~~~~~~ 326 (417)
T TIGR02800 261 YVMDLDGKQLTR---------LTNGPGIDTEPSWSPDGKSIAFTSD--RGGSPQIYMMDADG--GE-VRRLTFRGGYNAS 326 (417)
T ss_pred EEEECCCCCEEE---------CCCCCCCCCCEEECCCCCEEEEEEC--CCCCceEEEEECCC--CC-EEEeecCCCCccC
Confidence 888887664222 11121111 258899998876641 233 577777754 22 3344445566778
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCC---cEEEEeC
Q 000055 2372 ISVFDNDLGSGSVSPLIVTGGKGG---DVGIHDF 2402 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DG---tVrLWDL 2402 (2548)
+.|+|+ +..++.++.++ .|.+||+
T Consensus 327 ~~~spd-------g~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 327 PSWSPD-------GDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred eEECCC-------CCEEEEEEccCCceEEEEEeC
Confidence 899998 67888777765 7888884
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.29 E-value=0.00042 Score=87.50 Aligned_cols=258 Identities=10% Similarity=0.014 Sum_probs=148.0
Q ss_pred CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC----------CCcEEEEEcCCCccccccc
Q 000055 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL----------DGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2241 GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~----------DGtVrVWDl~tgk~i~i~p 2310 (2548)
++|.+.|..+++.+.++..-. .-..+ ++|||+.++++.. +..|.+||..+.+.....+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~-----------~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~ 94 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF-----------LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE 94 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC-----------CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc
Confidence 899999999999888875411 11124 9999999888766 7899999999887543322
Q ss_pred Cccc-eeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE
Q 000055 2311 MESC-LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV 2389 (2548)
Q Consensus 2311 ~~s~-~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV 2389 (2548)
.... ....+.......++|||+++++... +.+..|.+.|+.+ .+.+..+.. .+...-....+. ...
T Consensus 95 ~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-~p~~~V~VvD~~~--~kvv~ei~v-p~~~~vy~t~e~--------~~~- 161 (352)
T TIGR02658 95 LPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-SPSPAVGVVDLEG--KAFVRMMDV-PDCYHIFPTAND--------TFF- 161 (352)
T ss_pred cCCCchhhccCccceEEECCCCCEEEEecC-CCCCEEEEEECCC--CcEEEEEeC-CCCcEEEEecCC--------ccE-
Confidence 1100 0011222234469999999988642 1488999999986 555555543 111111111111 111
Q ss_pred EEeCCCcEEEEeCCccccCceeeee-cC-CCCCCCccccccccCC-CCCC-ccCCCCCceEEEc-------------ccC
Q 000055 2390 TGGKGGDVGIHDFRYIATGKTKKHK-HS-DRGGSSINTCAHADAQ-TGSG-SKPGDQNGMLWYI-------------PKA 2452 (2548)
Q Consensus 2390 SGS~DGtVrLWDLR~l~TGk~l~tl-~~-~~~~s~~~~~~vafSp-dGk~-v~s~D~sv~Iwdi-------------~~g 2452 (2548)
+-+.||......+. .+|+....- .. +.......... .+.+ +|+. ..+..+++.+.|+ ...
T Consensus 162 ~~~~Dg~~~~v~~d--~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR02658 162 MHCRDGSLAKVGYG--TKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTE 238 (352)
T ss_pred EEeecCceEEEEec--CCCceEEeeeeeecCCccccccCC-ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccc
Confidence 22334444433321 122211100 00 00000011111 2233 5555 2333366665552 111
Q ss_pred -------CCCCEEEEEEeCCCCEEEEEeC----------CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceee
Q 000055 2453 -------HLGSVTRISTVPNTSLFLTGSK----------DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2453 -------H~~~VtsLafSPdG~~LaSGS~----------DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
..+.+.-++++|+++.++.+.. .+.|.++|..+++.+..++ -|+
T Consensus 239 ~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-------------vG~------ 299 (352)
T TIGR02658 239 AEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-------------LGH------ 299 (352)
T ss_pred cccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-------------CCC------
Confidence 2233445999999988887531 2579999999999999883 233
Q ss_pred cEEEEEEcCCe---E-EEEECCCcEEEEECCCCc
Q 000055 2516 GVTDIQVVSRG---F-LSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2516 ~VtsLafSPdG---L-aSGS~DGtIrIWDL~sg~ 2545 (2548)
.+..++++||| + ++...++.|.+.|..++.
T Consensus 300 ~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 300 EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 25677999999 3 455678999999998764
No 249
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=2.6e-05 Score=94.35 Aligned_cols=190 Identities=16% Similarity=0.231 Sum_probs=123.3
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCC-CCEEEEEeccCCCCeEEE
Q 000055 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSS-GSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpd-GslLATgG~SS~DGtVrI 2348 (2548)
-.+..++|++.-..++++..|-+|++||-... +..+. + ......|. +|.|. ++.+++|+ .+.|.|
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~L-----k--s~sQrnvtclawRPlsaselavgC----r~gIci 166 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKL-----K--SVSQRNVTCLAWRPLSASELAVGC----RAGICI 166 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCC-CCcee-----c--chhhcceeEEEeccCCcceeeeee----cceeEE
Confidence 45788999998888999999999999997652 11110 1 11112333 46665 45666664 578999
Q ss_pred EECCCCC--CCc----------ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-CCCcEEEEeCCccccCceeeeec
Q 000055 2349 WDTLAPP--TSS----------RASITCHEGGARSISVFDNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKH 2415 (2548)
Q Consensus 2349 WDl~t~~--~k~----------v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~ 2415 (2548)
|...... ... +....+| ..|+++.|.++ +..+++++ .|..|.||| ..++..+...
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d-------gt~l~tAS~gsssi~iWd---pdtg~~~pL~- 234 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED-------GTILVTASFGSSSIMIWD---PDTGQKIPLI- 234 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCC-------CCEEeecccCcceEEEEc---CCCCCccccc-
Confidence 9875321 111 1222244 58999999999 67788777 577999999 5555554332
Q ss_pred CCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc
Q 000055 2416 SDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKL 2495 (2548)
Q Consensus 2416 ~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~ 2495 (2548)
...-+.++-+.|+|||.+|+.+.-|+..++|+..........
T Consensus 235 -----------------------------------~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw--- 276 (445)
T KOG2139|consen 235 -----------------------------------PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW--- 276 (445)
T ss_pred -----------------------------------ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce---
Confidence 123457888999999999999999999999965432211111
Q ss_pred ccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEE
Q 000055 2496 HERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKL 2538 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrI 2538 (2548)
. -+. +.| ....|+|+| |.+++..-.++-
T Consensus 277 ----~------lgs-grv----qtacWspcGsfLLf~~sgsp~lys 307 (445)
T KOG2139|consen 277 ----I------LGS-GRV----QTACWSPCGSFLLFACSGSPRLYS 307 (445)
T ss_pred ----e------ccC-Cce----eeeeecCCCCEEEEEEcCCceEEE
Confidence 0 122 234 344799999 567776655543
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.27 E-value=0.00012 Score=95.96 Aligned_cols=196 Identities=14% Similarity=0.178 Sum_probs=113.5
Q ss_pred CCeEEEEEccCCCEEEEEeCC-C--cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCe--E
Q 000055 2272 ASISALQFDHYGHRFASAALD-G--TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGIN--V 2346 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~D-G--tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGt--V 2346 (2548)
..+.+..|+|||+.|+..+.+ + .|.+||+.+++...+. .+.++... ..|+|||+.|+... +.++. |
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt------~~~g~~~~-~~wSPDG~~La~~~--~~~g~~~I 288 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT------SFPGINGA-PRFSPDGKKLALVL--SKDGQPEI 288 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec------CCCCCcCC-eeECCCCCEEEEEE--eCCCCeEE
Confidence 678899999999998876543 3 5888888876532211 12222222 35899999887654 25564 7
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEE-EeCCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000055 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVT-GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVS-GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
.++|+.+ + ....+..+........|+|+ ++.++. ...+|...+|-+. +.+++..+..
T Consensus 289 y~~dl~t--g-~~~~lt~~~~~~~~p~wSpD-------G~~I~f~s~~~g~~~Iy~~d-l~~g~~~~Lt----------- 346 (448)
T PRK04792 289 YVVDIAT--K-ALTRITRHRAIDTEPSWHPD-------GKSLIFTSERGGKPQIYRVN-LASGKVSRLT----------- 346 (448)
T ss_pred EEEECCC--C-CeEECccCCCCccceEECCC-------CCEEEEEECCCCCceEEEEE-CCCCCEEEEe-----------
Confidence 7777764 2 33444455556678899998 555554 4445554444322 3344432211
Q ss_pred cccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeC-CC--cEEEEECCCCcEEEEecccccccccc
Q 000055 2426 CAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK-DG--DVKLWDAKAAQLVYHWSKLHERHTFL 2502 (2548)
Q Consensus 2426 ~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~-DG--tIrIWDl~Tgell~tL~~~Hs~hsfl 2502 (2548)
..++ .....+|+|+|++++..+. ++ .|.++|+.+++... +.
T Consensus 347 ------------------------~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt--------- 390 (448)
T PRK04792 347 ------------------------FEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT--------- 390 (448)
T ss_pred ------------------------cCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc---------
Confidence 0111 1234689999998877655 34 45667888776532 21
Q ss_pred cCcccCCCCceeecEEEEEEcCCe--EE-EEECCCc--EEEEECCCC
Q 000055 2503 QPSSRGFGGVVRAGVTDIQVVSRG--FL-SCGGDGS--VKLIQLEDY 2544 (2548)
Q Consensus 2503 ~~tl~GH~~~V~a~VtsLafSPdG--La-SGS~DGt--IrIWDL~sg 2544 (2548)
.+.. . ....|+|+| |+ +...+|. +.+++++++
T Consensus 391 ----~~~~--d----~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 391 ----STRL--D----ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred ----CCCC--C----CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 1110 0 122699999 44 4444443 677777654
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.27 E-value=3.5e-05 Score=92.99 Aligned_cols=197 Identities=14% Similarity=0.119 Sum_probs=135.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCC-ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD-KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg-~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+.+++++++...|+.|-..|++.-+.+... +.....+ ....|...|..+-|+.....+++.+.|..+.---.
T Consensus 71 ~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r-------~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~ 143 (404)
T KOG1409|consen 71 CSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLK-------DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCT 143 (404)
T ss_pred ceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhh-------hhhhhhcceeeEEecCCceeEEEeccccceEEEee
Confidence 688999999999999999999988876532 1122221 23346799999999999999999999988754444
Q ss_pred CCCcccccccCccceeccCCcccEE-EEcC--CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000055 2301 EVGGRSNVRPMESCLCFSSHAMDVS-YITS--SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~-afSp--dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+.+.... |-.-.+ +..+ |-.+...|. ..|.|.+-.+.......+..+.+|.+.+.++.|.+.
T Consensus 144 e~~~~lg------------~Y~~~~~~t~~~~d~~~~fvGd---~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~ 208 (404)
T KOG1409|consen 144 ESGNRLG------------GYNFETPASALQFDALYAFVGD---HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG 208 (404)
T ss_pred ccCCccc------------ceEeeccCCCCceeeEEEEecc---cccceEEEEEeecCCceEEEEcCcccceEEEEEcCC
Confidence 4443211 110000 0000 001222322 445555555544335678899999999999999998
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000055 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
..++.+|..|..|.+||+. ..++.. . ...+|...|
T Consensus 209 -------~~~LfSg~~d~~vi~wdig-g~~g~~--~-----------------------------------el~gh~~kV 243 (404)
T KOG1409|consen 209 -------QRLLFSGASDHSVIMWDIG-GRKGTA--Y-----------------------------------ELQGHNDKV 243 (404)
T ss_pred -------CcEEEeccccCceEEEecc-CCccee--e-----------------------------------eeccchhhh
Confidence 5799999999999999964 112211 1 126788888
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000055 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
..+...+..+.+++++.||.|.+||++.
T Consensus 244 ~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 244 QALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 8888888888899999999999999864
No 252
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.26 E-value=1.7e-05 Score=93.96 Aligned_cols=282 Identities=15% Similarity=0.175 Sum_probs=167.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCC-----CCCCeEEEEEccCC--CEEEEEeCC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPY-----ALASISALQFDHYG--HRFASAALD 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~-----H~~~VtsVaFSPdG--~~LaSGS~D 2292 (2548)
+.++.|.-.|.|+++|...|.|.+|.-.... ..+-+..+++|.....+ -...|..+.|-.++ ..++..+.|
T Consensus 29 ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNd 108 (460)
T COG5170 29 ITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND 108 (460)
T ss_pred eeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCC
Confidence 7899999999999999999999999876533 22334445665532222 12578899997643 457777899
Q ss_pred CcEEEEEcCCCccc-------------c-cccCcc--------------------cee-ccCCcccEEE--EcCCCCEEE
Q 000055 2293 GTVCTWQLEVGGRS-------------N-VRPMES--------------------CLC-FSSHAMDVSY--ITSSGSVIA 2335 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i-------------~-i~p~~s--------------------~~t-~~gH~~~V~a--fSpdGslLA 2335 (2548)
++|++|.+...... . ..|..+ ... -..|..-+.+ ++.|...++
T Consensus 109 ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~l 188 (460)
T COG5170 109 KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLL 188 (460)
T ss_pred ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheee
Confidence 99999987532000 0 000000 000 1234433333 566777888
Q ss_pred EEeccCCCCeEEEEECCCCCCCc-ceeeeccC-----CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCc
Q 000055 2336 AAGHSSNGINVVVWDTLAPPTSS-RASITCHE-----GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGK 2409 (2548)
Q Consensus 2336 TgG~SS~DGtVrIWDl~t~~~k~-v~sl~gHs-----~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk 2409 (2548)
++ +|-.|.+|++...++.. +..++.|. .-|++..|+|.. ...+.-.+..|.|++-|+|+..-..
T Consensus 189 Sa----DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~------cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 189 SA----DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM------CNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred ec----cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH------cceEEEecCCCcEEehhhhhhhhcc
Confidence 86 78999999998643332 34444543 468899999985 6688888899999999988511100
Q ss_pred eeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CcE
Q 000055 2410 TKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA-AQL 2488 (2548)
Q Consensus 2410 ~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T-gel 2488 (2548)
....+. ...-|+ .-.+.+.+-...|..+.|+++|+++++-+. -+|+|||++. ..+
T Consensus 259 n~~klf-------------e~~~D~----------v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 259 NSKKLF-------------ELTIDG----------VDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred Cchhhh-------------hhccCc----------ccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence 000000 000000 001122444568889999999999987654 5899999984 567
Q ss_pred EEEecccccccc-cccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEEC
Q 000055 2489 VYHWSKLHERHT-FLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2489 l~tL~~~Hs~hs-fl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
+.+++ .|..-. -+.... ..+.|-+ -..+.||.+. +++|+.....-+|-.
T Consensus 315 ikTi~-~h~~l~~~l~d~Y--EnDaifd-kFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 315 IKTIP-MHCDLMDELNDVY--ENDAIFD-KFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ceeec-hHHHHHHHHHhhh--hccceee-eEEEEecCCcccccccccccceeeecc
Confidence 77773 221100 000000 0111211 1345666655 777777666666653
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=0.00022 Score=92.66 Aligned_cols=213 Identities=14% Similarity=0.149 Sum_probs=124.4
Q ss_pred eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---CcEEEEEcCCCcccccccCccceecc
Q 000055 2242 HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---GTVCTWQLEVGGRSNVRPMESCLCFS 2318 (2548)
Q Consensus 2242 sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---GtVrVWDl~tgk~i~i~p~~s~~t~~ 2318 (2548)
.|.++|.+.+... .+.. +...+....|+|||+.|+..+.+ ..|.+||+.++....+. ...
T Consensus 180 ~l~~~d~~g~~~~-~l~~----------~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~------~~~ 242 (430)
T PRK00178 180 TLQRSDYDGARAV-TLLQ----------SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT------NFE 242 (430)
T ss_pred EEEEECCCCCCce-EEec----------CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc------CCC
Confidence 4777777654432 2211 23678999999999999876644 36888999877532211 122
Q ss_pred CCcccEEEEcCCCCEEEEEeccCCCC--eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-CCC
Q 000055 2319 SHAMDVSYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG-KGG 2395 (2548)
Q Consensus 2319 gH~~~V~afSpdGslLATgG~SS~DG--tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~DG 2395 (2548)
++.. -..|+|||+.++... +.++ .|.+||+.++ ....+..+........|+|+ ++.++..+ .+|
T Consensus 243 g~~~-~~~~SpDG~~la~~~--~~~g~~~Iy~~d~~~~---~~~~lt~~~~~~~~~~~spD-------g~~i~f~s~~~g 309 (430)
T PRK00178 243 GLNG-APAWSPDGSKLAFVL--SKDGNPEIYVMDLASR---QLSRVTNHPAIDTEPFWGKD-------GRTLYFTSDRGG 309 (430)
T ss_pred CCcC-CeEECCCCCEEEEEE--ccCCCceEEEEECCCC---CeEEcccCCCCcCCeEECCC-------CCEEEEEECCCC
Confidence 2222 235899999887543 2344 6888898752 23344555556677889998 55555444 445
Q ss_pred c--EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEe
Q 000055 2396 D--VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGS 2473 (2548)
Q Consensus 2396 t--VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS 2473 (2548)
. |.++| +.+++..+.. ..+ .......|+|+|+.++..+
T Consensus 310 ~~~iy~~d---~~~g~~~~lt-----------------------------------~~~--~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 310 KPQIYKVN---VNGGRAERVT-----------------------------------FVG--NYNARPRLSADGKTLVMVH 349 (430)
T ss_pred CceEEEEE---CCCCCEEEee-----------------------------------cCC--CCccceEECCCCCEEEEEE
Confidence 4 55556 3344432211 011 1123467999999988776
Q ss_pred CC-C--cEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE-EEECC--CcEEEEECCCC
Q 000055 2474 KD-G--DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL-SCGGD--GSVKLIQLEDY 2544 (2548)
Q Consensus 2474 ~D-G--tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La-SGS~D--GtIrIWDL~sg 2544 (2548)
.+ + .|.+||+.+++.. .+. .+.. . ....|+|+| ++ +...+ +.|.+++++++
T Consensus 350 ~~~~~~~l~~~dl~tg~~~-~lt-------------~~~~--~----~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSVR-ILT-------------DTSL--D----ESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred ccCCceEEEEEECCCCCEE-Ecc-------------CCCC--C----CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 53 3 5888999887653 231 1110 0 123799999 44 43333 34667777654
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.21 E-value=0.00018 Score=93.36 Aligned_cols=151 Identities=11% Similarity=0.084 Sum_probs=90.7
Q ss_pred EEEEEEcCCCCEEEEEECC---CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCC--cE
Q 000055 2222 TRAFSSHPLRPFFLVGSSN---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDG--TV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D---GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DG--tV 2295 (2548)
+...+|+|||+.|+..+.+ ..|.+||+.+++.... ... .+.+...+|+|||++++ +.+.+| .|
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~----------~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNF----------EGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCC----------CCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 5778999999999865533 4689999988764332 111 13355689999999887 455555 57
Q ss_pred EEEEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000055 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
.+||++++.... +..+.... ..|+|||+.++.......+..|.++|+.. ++. ..+...........
T Consensus 270 y~~d~~~~~~~~---------lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~--g~~-~~lt~~~~~~~~~~ 337 (430)
T PRK00178 270 YVMDLASRQLSR---------VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG--GRA-ERVTFVGNYNARPR 337 (430)
T ss_pred EEEECCCCCeEE---------cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC--CCE-EEeecCCCCccceE
Confidence 778888764321 11121111 25899999887664211123566777754 332 22222223334567
Q ss_pred EccCCCCCCCCCCEEEEEeC-CC--cEEEEeC
Q 000055 2374 VFDNDLGSGSVSPLIVTGGK-GG--DVGIHDF 2402 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~-DG--tVrLWDL 2402 (2548)
|+|+ ++.++..+. ++ .|.++|+
T Consensus 338 ~Spd-------g~~i~~~~~~~~~~~l~~~dl 362 (430)
T PRK00178 338 LSAD-------GKTLVMVHRQDGNFHVAAQDL 362 (430)
T ss_pred ECCC-------CCEEEEEEccCCceEEEEEEC
Confidence 8888 566666554 33 4777883
No 255
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.19 E-value=0.00021 Score=91.27 Aligned_cols=194 Identities=19% Similarity=0.145 Sum_probs=123.4
Q ss_pred EEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCcc
Q 000055 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMES 2313 (2548)
Q Consensus 2234 LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s 2313 (2548)
+++-..+|.|.+.|..+.+.+..+.... ..-..+.|+|||+++++++.||.|.++|+.+++.+...
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~----------~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i---- 74 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGG----------APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI---- 74 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-ST----------TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE----
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCC----------CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE----
Confidence 3456778999999999999988885311 22345789999999999999999999999988744321
Q ss_pred ceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc-------CCCeEEEEEccCCCCCCCCCC
Q 000055 2314 CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH-------EGGARSISVFDNDLGSGSVSP 2386 (2548)
Q Consensus 2314 ~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH-------s~~VtSLafsP~dlg~gs~g~ 2386 (2548)
-.+....-.++++||++++++.+ .++.+.++|.++ .+.+..+... ...+..+..+|. .+
T Consensus 75 ---~~G~~~~~i~~s~DG~~~~v~n~--~~~~v~v~D~~t--le~v~~I~~~~~~~~~~~~Rv~aIv~s~~-------~~ 140 (369)
T PF02239_consen 75 ---KVGGNPRGIAVSPDGKYVYVANY--EPGTVSVIDAET--LEPVKTIPTGGMPVDGPESRVAAIVASPG-------RP 140 (369)
T ss_dssp ---E-SSEEEEEEE--TTTEEEEEEE--ETTEEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SS-------SS
T ss_pred ---ecCCCcceEEEcCCCCEEEEEec--CCCceeEecccc--ccceeecccccccccccCCCceeEEecCC-------CC
Confidence 12222233468999999998863 689999999976 6666666532 345677777776 45
Q ss_pred EEEEEeC-CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC
Q 000055 2387 LIVTGGK-GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN 2465 (2548)
Q Consensus 2387 lLVSGS~-DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd 2465 (2548)
.++..-. .+.|-+-|... .+.+... . ...........|+|+
T Consensus 141 ~fVv~lkd~~~I~vVdy~d---~~~~~~~-------------------------------~----i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 141 EFVVNLKDTGEIWVVDYSD---PKNLKVT-------------------------------T----IKVGRFPHDGGFDPD 182 (369)
T ss_dssp EEEEEETTTTEEEEEETTT---SSCEEEE-------------------------------E----EE--TTEEEEEE-TT
T ss_pred EEEEEEccCCeEEEEEecc---cccccee-------------------------------e----ecccccccccccCcc
Confidence 4555544 47777777432 2222111 0 112234456789999
Q ss_pred CCEEEEE-eCCCcEEEEECCCCcEEEEec
Q 000055 2466 TSLFLTG-SKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2466 G~~LaSG-S~DGtIrIWDl~Tgell~tL~ 2493 (2548)
++|++.+ ..+..|-++|.++++.+..+.
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred cceeeecccccceeEEEeeccceEEEEee
Confidence 9988775 457799999999998877653
No 256
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.00018 Score=94.13 Aligned_cols=147 Identities=12% Similarity=0.112 Sum_probs=86.1
Q ss_pred EEEEEEcCCCCEEEEEEC-CC--eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE-EeCCCc--E
Q 000055 2222 TRAFSSHPLRPFFLVGSS-NT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDGT--V 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~-DG--sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS-GS~DGt--V 2295 (2548)
+....|+|||+.|+..+. ++ .|.+||+.+++... +.... +.....+|+|||+.|+. .+.+|. |
T Consensus 220 ~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~----------g~~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFP----------GINGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred ccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCC----------CCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence 467889999999886543 33 58888988776432 22111 23346899999998865 566775 6
Q ss_pred EEEEcCCCcccccccCccceeccCCcc--cEEEEcCCCCEEEEEeccCCCC--eEEEEECCCCCCCcceeeeccCCCeEE
Q 000055 2296 CTWQLEVGGRSNVRPMESCLCFSSHAM--DVSYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~--~V~afSpdGslLATgG~SS~DG--tVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.++|+++++... +..+.. .-..|+|||+.++.... .++ .|.++|+.. ++. ..+..+......
T Consensus 289 y~~dl~tg~~~~---------lt~~~~~~~~p~wSpDG~~I~f~s~--~~g~~~Iy~~dl~~--g~~-~~Lt~~g~~~~~ 354 (448)
T PRK04792 289 YVVDIATKALTR---------ITRHRAIDTEPSWHPDGKSLIFTSE--RGGKPQIYRVNLAS--GKV-SRLTFEGEQNLG 354 (448)
T ss_pred EEEECCCCCeEE---------CccCCCCccceEECCCCCEEEEEEC--CCCCceEEEEECCC--CCE-EEEecCCCCCcC
Confidence 667777664221 112221 11258999998877642 344 455566654 332 222222233445
Q ss_pred EEEccCCCCCCCCCCEEEEEe-CCCcEEEE
Q 000055 2372 ISVFDNDLGSGSVSPLIVTGG-KGGDVGIH 2400 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS-~DGtVrLW 2400 (2548)
..|+|+ ++.++..+ .++..+||
T Consensus 355 ~~~SpD-------G~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 355 GSITPD-------GRSMIMVNRTNGKFNIA 377 (448)
T ss_pred eeECCC-------CCEEEEEEecCCceEEE
Confidence 688988 56665544 34544443
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.15 E-value=0.0002 Score=93.24 Aligned_cols=203 Identities=11% Similarity=0.024 Sum_probs=117.5
Q ss_pred EEEEEcCCCCEE---EEEECC--CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CC---
Q 000055 2223 RAFSSHPLRPFF---LVGSSN--THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DG--- 2293 (2548)
Q Consensus 2223 ~~VsfSPdG~~L---ASGS~D--GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DG--- 2293 (2548)
..-.|+|||+.+ .+...+ ..|.+.++.+++.... ..++ +.....+|+|||+.|+..+. +|
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~----------g~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQ----------GNQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCC----------CCccceEECCCCCEEEEEECCCCCcc
Confidence 455899999742 244333 3577778877754332 2222 34556899999998887653 23
Q ss_pred -cEEEEEcCCCcccccccCccceeccCCccc--EEEEcCCCCEEEEEeccCCCCeEEEEECCCC-CCCcceeeeccCCCe
Q 000055 2294 -TVCTWQLEVGGRSNVRPMESCLCFSSHAMD--VSYITSSGSVIAAAGHSSNGINVVVWDTLAP-PTSSRASITCHEGGA 2369 (2548)
Q Consensus 2294 -tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~--V~afSpdGslLATgG~SS~DGtVrIWDl~t~-~~k~v~sl~gHs~~V 2369 (2548)
.+..|++..+...... +...++... -..|+|||+.|+... ..+|...+|.+... .+.....+..+...+
T Consensus 257 i~~~~~~~~~g~~g~~~-----~lt~~~~~~~~~p~wSPDG~~Laf~s--~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~ 329 (428)
T PRK01029 257 LFIQSFSLETGAIGKPR-----RLLNEAFGTQGNPSFSPDGTRLVFVS--NKDGRPRIYIMQIDPEGQSPRLLTKKYRNS 329 (428)
T ss_pred eeEEEeecccCCCCcce-----EeecCCCCCcCCeEECCCCCEEEEEE--CCCCCceEEEEECcccccceEEeccCCCCc
Confidence 4445776653111101 111111111 125999999888764 24565556654321 122334454555677
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCC---CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceE
Q 000055 2370 RSISVFDNDLGSGSVSPLIVTGGKG---GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGML 2446 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~D---GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~I 2446 (2548)
....|+|+ |+.|+..+.+ ..|.+|| +.+++.....
T Consensus 330 ~~p~wSPD-------G~~Laf~~~~~g~~~I~v~d---l~~g~~~~Lt-------------------------------- 367 (428)
T PRK01029 330 SCPAWSPD-------GKKIAFCSVIKGVRQICVYD---LATGRDYQLT-------------------------------- 367 (428)
T ss_pred cceeECCC-------CCEEEEEEcCCCCcEEEEEE---CCCCCeEEcc--------------------------------
Confidence 88999999 6777655433 3688888 4445432221
Q ss_pred EEcccCCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEECCCCcEEE
Q 000055 2447 WYIPKAHLGSVTRISTVPNTSLFLTGSK---DGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2447 wdi~~gH~~~VtsLafSPdG~~LaSGS~---DGtIrIWDl~Tgell~ 2490 (2548)
.....+....|+|||+.|+..+. ++.|.+||+.+++...
T Consensus 368 -----~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 368 -----TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred -----CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 11223456889999998775433 3578889998776543
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.15 E-value=0.00037 Score=90.86 Aligned_cols=205 Identities=12% Similarity=0.090 Sum_probs=115.7
Q ss_pred CCeEEEEEccCCCEE---EEEeCCC--cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEecc--CCCC
Q 000055 2272 ASISALQFDHYGHRF---ASAALDG--TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS--SNGI 2344 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~L---aSGS~DG--tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~S--S~DG 2344 (2548)
..+.+=+|+|||+.+ ++...+| .|.+.++.+++...+ ..+.+... .-.|+|||+.|+..... ..+.
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l------t~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI------LALQGNQL-MPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe------ecCCCCcc-ceEECCCCCEEEEEECCCCCcce
Confidence 445677999999752 3455554 566667776643221 11233222 13599999988876410 0122
Q ss_pred eEEEEECCCCC-CCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCCC
Q 000055 2345 NVVVWDTLAPP-TSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSS 2422 (2548)
Q Consensus 2345 tVrIWDl~t~~-~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~ 2422 (2548)
.+.+|++.... +........+.+......|+|+ |+.|+..+ .+|...+|.+..-..+...+.+
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD-------G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l-------- 322 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD-------GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL-------- 322 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECCC-------CCEEEEEECCCCCceEEEEECcccccceEEe--------
Confidence 34456765421 2223333233344567899999 66666544 5776666653210011111111
Q ss_pred ccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccccccc
Q 000055 2423 INTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD---GDVKLWDAKAAQLVYHWSKLHERH 2499 (2548)
Q Consensus 2423 ~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D---GtIrIWDl~Tgell~tL~~~Hs~h 2499 (2548)
..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +.
T Consensus 323 ----------------------------t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt------ 367 (428)
T PRK01029 323 ----------------------------TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LT------ 367 (428)
T ss_pred ----------------------------ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-cc------
Confidence 2233455678899999988876543 379999999887643 21
Q ss_pred ccccCcccCCCCceeecEEEEEEcCCe--EE-EEE--CCCcEEEEECCCCc
Q 000055 2500 TFLQPSSRGFGGVVRAGVTDIQVVSRG--FL-SCG--GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2500 sfl~~tl~GH~~~V~a~VtsLafSPdG--La-SGS--~DGtIrIWDL~sg~ 2545 (2548)
.+ .. .+.+..|+||| |+ ++. .++.|.+++++++.
T Consensus 368 -------~~-~~----~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 368 -------TS-PE----NKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred -------CC-CC----CccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 11 11 12345899999 44 333 24578888988764
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.13 E-value=5.2e-05 Score=91.56 Aligned_cols=237 Identities=16% Similarity=0.129 Sum_probs=153.6
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC-CcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeE
Q 000055 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEV-GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t-gk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtV 2346 (2548)
.+|.+.|++...-|-..-+++.+.|.++++|--+. ++.-. ...-.......+..+.+....|+.+- ++|++
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wp-----sI~~~mP~~~~~~~y~~e~~~L~vg~---~ngtv 92 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWP-----SIYHYMPSPCSAMEYVSESRRLYVGQ---DNGTV 92 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCc-----hhhhhCCCCceEeeeeccceEEEEEE---ecceE
Confidence 45668888888888777899999999999996543 32111 11112222334445666777777764 78999
Q ss_pred EEEECCCC--CCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000055 2347 VVWDTLAP--PTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2347 rIWDl~t~--~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
.-+.+... .....+....|...|..+.|+-. ..++++.+.|..+.-.- .+.+..+..........
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~-------~e~V~s~~~dk~~~~hc---~e~~~~lg~Y~~~~~~t--- 159 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT-------HEWVLSTGKDKQFAWHC---TESGNRLGGYNFETPAS--- 159 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCC-------ceeEEEeccccceEEEe---eccCCcccceEeeccCC---
Confidence 88876421 12345666789999999999876 57999999998876555 33333332210000000
Q ss_pred ccccccCCCCCCccCCCCCceEEE----------cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 000055 2425 TCAHADAQTGSGSKPGDQNGMLWY----------IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSK 2494 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwd----------i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~ 2494 (2548)
...+.-.-.+++...+.+.... .+.+|.+.+++++|+|....|++|..|..|.+||+.-++-+...
T Consensus 160 --~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e-- 235 (404)
T KOG1409|consen 160 --ALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE-- 235 (404)
T ss_pred --CCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee--
Confidence 0000000111333444443332 45789999999999999999999999999999999765544322
Q ss_pred cccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000055 2495 LHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2495 ~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
+.||.+.|.+. ..-+.- +.+++.||.|.+|+++..
T Consensus 236 -----------l~gh~~kV~~l----~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 236 -----------LQGHNDKVQAL----SYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred -----------eccchhhhhhh----hhhhhheeeeeccCCCeEEEEeccce
Confidence 47787777543 222222 899999999999999754
No 260
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.10 E-value=3.3e-05 Score=92.99 Aligned_cols=220 Identities=23% Similarity=0.315 Sum_probs=129.9
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCc---------------ccEEEEcC-CCCEEE
Q 000055 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHA---------------MDVSYITS-SGSVIA 2335 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~---------------~~V~afSp-dGslLA 2335 (2548)
+-|.+|.|..+|.+|+||+.+|.|.++.-+..... .......++.|. ..|.++.+ +...+.
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~---ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG---EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeeccccccc---ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 67999999999999999999999999986543210 011111233333 23333333 233444
Q ss_pred EEeccCCCCeEEEEECCCCCCCc---------------------------------ceee-eccCCCeEEEEEccCCCCC
Q 000055 2336 AAGHSSNGINVVVWDTLAPPTSS---------------------------------RASI-TCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2336 TgG~SS~DGtVrIWDl~t~~~k~---------------------------------v~sl-~gHs~~VtSLafsP~dlg~ 2381 (2548)
..+ .|++|++|.+.....+. .+.+ .+|+--|+++.++.+
T Consensus 103 lst---NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD---- 175 (433)
T KOG1354|consen 103 LST---NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD---- 175 (433)
T ss_pred Eec---CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc----
Confidence 444 89999999986422111 0011 146667788887776
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc----CCCCCE
Q 000055 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK----AHLGSV 2457 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~----gH~~~V 2457 (2548)
...++++ .|=.|.+|++.. .|+.-.|.|+-. .-..-|
T Consensus 176 ---~Et~lSA-DdLRINLWnlei-----------------------------------~d~sFnIVDIKP~nmEeLteVI 216 (433)
T KOG1354|consen 176 ---KETFLSA-DDLRINLWNLEI-----------------------------------IDQSFNIVDIKPANMEELTEVI 216 (433)
T ss_pred ---cceEeec-cceeeeeccccc-----------------------------------cCCceeEEEccccCHHHHHHHH
Confidence 4455554 477788888542 111122333322 224468
Q ss_pred EEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCc
Q 000055 2458 TRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGS 2535 (2548)
Q Consensus 2458 tsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGt 2535 (2548)
++..|+|. ..+|+-.+..|+|++-|++...+...-.+..+.. ..+.-+..-..|-+.|.++.|+++| ++-.-+--+
T Consensus 217 TsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep--edp~~rsffseiIsSISDvKFs~sGryilsRDylt 294 (433)
T KOG1354|consen 217 TSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP--EDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLT 294 (433)
T ss_pred hhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc--cCCcchhhHHHHhhhhhceEEccCCcEEEEeccce
Confidence 88899995 5788888899999999999554432111000000 0011111112233668999999999 443334489
Q ss_pred EEEEECC
Q 000055 2536 VKLIQLE 2542 (2548)
Q Consensus 2536 IrIWDL~ 2542 (2548)
|++||+.
T Consensus 295 vk~wD~n 301 (433)
T KOG1354|consen 295 VKLWDLN 301 (433)
T ss_pred eEEEecc
Confidence 9999984
No 261
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.10 E-value=0.00097 Score=95.32 Aligned_cols=283 Identities=10% Similarity=0.088 Sum_probs=154.3
Q ss_pred EEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCC----CCCCCCCeEEEEEccCCCEEEEEeC-CCcEEEE
Q 000055 2225 FSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVP----PPYALASISALQFDHYGHRFASAAL-DGTVCTW 2298 (2548)
Q Consensus 2225 VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~----~~~H~~~VtsVaFSPdG~~LaSGS~-DGtVrVW 2298 (2548)
+++++ ++.++++-+.++.|+++|.. +..+..+......... ...+...-..|+++++++.|+++.. ++.|+++
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 45556 46677777888999999975 4444443221000000 0112345688999998887766654 5789999
Q ss_pred EcCCCcccccccCcc-ceecc----------CCcccEEEEcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcceeeec--
Q 000055 2299 QLEVGGRSNVRPMES-CLCFS----------SHAMDVSYITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC-- 2364 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s-~~t~~----------gH~~~V~afSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g-- 2364 (2548)
|..++....+..... ..... .+...| +++++ +.++++. +.++.|++||.... .+..+.+
T Consensus 652 d~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gV-a~dp~~g~LyVad---~~~~~I~v~d~~~g---~v~~~~G~G 724 (1057)
T PLN02919 652 DFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDV-CFEPVNEKVYIAM---AGQHQIWEYNISDG---VTRVFSGDG 724 (1057)
T ss_pred ecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEE-EEecCCCeEEEEE---CCCCeEEEEECCCC---eEEEEecCC
Confidence 987653211100000 00000 111122 57774 4555554 37889999998642 1212211
Q ss_pred -------c------CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000055 2365 -------H------EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2365 -------H------s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
+ -...+.|+++|++ +.++++-+.++.|++||+ .++........... .
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG------~~LYVADs~n~~Irv~D~---~tg~~~~~~gg~~~-----------~ 784 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDL------KELYIADSESSSIRALDL---KTGGSRLLAGGDPT-----------F 784 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCC------CEEEEEECCCCeEEEEEC---CCCcEEEEEecccc-----------c
Confidence 1 1235678888883 336677778899999994 34432111100000 0
Q ss_pred CCCCC-ccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccc-cCcccCC
Q 000055 2432 QTGSG-SKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFL-QPSSRGF 2509 (2548)
Q Consensus 2432 pdGk~-v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl-~~tl~GH 2509 (2548)
++... .+..++... ...-..-.+++++++|.++++-+.++.|++||..++...... +. ....+. .....+.
T Consensus 785 ~~~l~~fG~~dG~g~-----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~-G~~G~~dG~~~~a~ 857 (1057)
T PLN02919 785 SDNLFKFGDHDGVGS-----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GT-GKAGFKDGKALKAQ 857 (1057)
T ss_pred CcccccccCCCCchh-----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-cc-CCcCCCCCcccccc
Confidence 00000 011111000 011122358899999999999999999999999887665432 10 000000 0000011
Q ss_pred CCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000055 2510 GGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2510 ~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
- .....++++++| +++.+.+++|++||+.++..
T Consensus 858 l----~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 858 L----SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred c----CCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1 124677999999 77888999999999988743
No 262
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.07 E-value=5.3e-05 Score=88.74 Aligned_cols=213 Identities=16% Similarity=0.158 Sum_probs=119.7
Q ss_pred eEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCC-C-CCCCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000055 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN-V-PPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2220 V~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs-~-~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrV 2297 (2548)
+.+..+.+.-+ ..|+++..++.+......++.+......-.+.. + -..+|.+.-.+-+.+-.++.++++..||.+.+
T Consensus 37 ~~~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 37 VKLSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAV 115 (319)
T ss_pred eEEEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEE
Confidence 44566665443 356677666666555544433322111000000 0 00011122112222234677999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccE-EEEcCCCCEEEEEecc--CCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000055 2298 WQLEVGGRSNVRPMESCLCFSSHAMDV-SYITSSGSVIAAAGHS--SNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V-~afSpdGslLATgG~S--S~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
.+.+...... .. .-..|.+.. .++...++.+.++++. ..-+..++|+++.. ...+...+ -...|++++-
T Consensus 116 ~s~~~~~~~~-~~-----i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~-~t~~~~~~-~~~~v~~l~~ 187 (319)
T KOG4714|consen 116 FSTDKDLALM-SR-----IPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPI-KTLIPSKK-ALDAVTALCS 187 (319)
T ss_pred EechHHHhhh-hh-----cccccccccccceeecccEEecCCcceEeeccceeeeccccc-cccccccc-ccccchhhhC
Confidence 9987521110 00 011111111 1233355666665421 02234566776531 11111111 2234999999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000055 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
+|.. ..++++|+.||.+-+||.|+.. ... ..+..|+
T Consensus 188 hp~q------q~~v~cgt~dg~~~l~d~rn~~--~p~------------------------------------S~l~ahk 223 (319)
T KOG4714|consen 188 HPAQ------QHLVCCGTDDGIVGLWDARNVA--MPV------------------------------------SLLKAHK 223 (319)
T ss_pred Cccc------ccEEEEecCCCeEEEEEccccc--chH------------------------------------HHHHHhh
Confidence 9985 7799999999999999987520 110 1237899
Q ss_pred CCEEEEEEeC-CCCEEEEEeCCCcEEEEECCC
Q 000055 2455 GSVTRISTVP-NTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2455 ~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~T 2485 (2548)
.+|+.+-|+| ++..|+++++||.+.-||..+
T Consensus 224 ~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 224 AEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999999 678999999999999999874
No 263
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.05 E-value=0.00019 Score=84.52 Aligned_cols=198 Identities=13% Similarity=0.023 Sum_probs=130.3
Q ss_pred CCEEEEEECCCeEEEEEcCCCcee-EEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcCCCccccc
Q 000055 2231 RPFFLVGSSNTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRSNV 2308 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l-~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~tgk~i~i 2308 (2548)
..+||.|+..|...+|...+.+.. ..... |...|+-+.=..+ ...+..++.|.++++.+++.+...
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~----------snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~-- 151 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDV----------SNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK-- 151 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecc----------cccchhhhhhhcccccceeeccCCcceeEEEEecCccc--
Confidence 457999999999999998865432 22211 1122221111111 234777889999999998755321
Q ss_pred ccCccceeccCCccc--E--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-eeeccCCCeEEEEEccCCCCCCC
Q 000055 2309 RPMESCLCFSSHAMD--V--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGGARSISVFDNDLGSGS 2383 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~--V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-sl~gHs~~VtSLafsP~dlg~gs 2383 (2548)
+..|... + ..+++|+++.++.| +...|-.|.+.......+. .....++.-.+..|+..
T Consensus 152 --------~~~h~~~~~~ns~~~snd~~~~~~Vg---ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~------ 214 (344)
T KOG4532|consen 152 --------FAVHNQNLTQNSLHYSNDPSWGSSVG---DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN------ 214 (344)
T ss_pred --------ceeeccccceeeeEEcCCCceEEEec---CCCcceEEEeCCccceeeeeEecccCCCceeeeeccC------
Confidence 1122222 1 24899999999998 6788999988753233333 23344556677888877
Q ss_pred CCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEe
Q 000055 2384 VSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTV 2463 (2548)
Q Consensus 2384 ~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafS 2463 (2548)
...+|++..||++.|||+|.+.+....... ....|.++++.+.|+
T Consensus 215 -~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss----------------------------------trp~hnGa~R~c~Fs 259 (344)
T KOG4532|consen 215 -DLQFAVVFQDGTCAIYDVRNMATPMAEISS----------------------------------TRPHHNGAFRVCRFS 259 (344)
T ss_pred -cceEEEEecCCcEEEEEecccccchhhhcc----------------------------------cCCCCCCceEEEEec
Confidence 569999999999999999875443221111 014589999999999
Q ss_pred CCC--CEEEEEeCCCcEEEEECCCCcEEEEe
Q 000055 2464 PNT--SLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2464 PdG--~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
|.| .+|+-.-.-+.+.+-|++++...+.+
T Consensus 260 l~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 260 LYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred CCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 876 45555555678999999998776655
No 264
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=9.5e-06 Score=100.55 Aligned_cols=176 Identities=17% Similarity=0.265 Sum_probs=120.9
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCC
Q 000055 2267 PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2267 ~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DG 2344 (2548)
..+|+..|..++--.+.+-+++++.|++|++|.++.... .+....+..+++.|...|.. |-.+-+.++++ ||
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD-~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-----D~ 804 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD-EIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-----DG 804 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC-ccccceeeeEhhhccCcccceeeeeccceeeec-----cC
Confidence 345778898888777888899999999999999974321 12233345567888887764 55566777774 89
Q ss_pred eEEEEECCCCCCCcceeee--ccCCCeEEEEEccC-CCCCCCCCCEEEEE-eCCCcEEEEeCCccccCceeeeecCCCCC
Q 000055 2345 NVVVWDTLAPPTSSRASIT--CHEGGARSISVFDN-DLGSGSVSPLIVTG-GKGGDVGIHDFRYIATGKTKKHKHSDRGG 2420 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~--gHs~~VtSLafsP~-dlg~gs~g~lLVSG-S~DGtVrLWDLR~l~TGk~l~tl~~~~~~ 2420 (2548)
.|.+||.-. ++.+..+. ...+.+..+...++ + ...++.| +...+|+++|.|. +.....
T Consensus 805 giHlWDPFi--gr~Laq~~dapk~~a~~~ikcl~nv~------~~iliAgcsaeSTVKl~DaRs---ce~~~E------- 866 (1034)
T KOG4190|consen 805 GIHLWDPFI--GRLLAQMEDAPKEGAGGNIKCLENVD------RHILIAGCSAESTVKLFDARS---CEWTCE------- 866 (1034)
T ss_pred cceeecccc--cchhHhhhcCcccCCCceeEecccCc------chheeeeccchhhheeeeccc---ccceee-------
Confidence 999999864 34433221 11222333333333 1 3355554 7889999999662 222111
Q ss_pred CCccccccccCCCCCCccCCCCCceEEEcc--cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000055 2421 SSINTCAHADAQTGSGSKPGDQNGMLWYIP--KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2421 s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~--~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
|.+- .+..+.+++++..|.|+.++.|-..|.|.+-|.++|+.+..+
T Consensus 867 --------------------------~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 867 --------------------------LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred --------------------------EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence 2211 345667899999999999999999999999999999998876
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.01 E-value=5.3e-05 Score=93.39 Aligned_cols=78 Identities=17% Similarity=0.317 Sum_probs=65.5
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEE
Q 000055 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLS 2529 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaS 2529 (2548)
-||-..++.|+++||+++++|+..|..|+|=....-..+..| +-||.. -|..++.-++. |+|
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf-------------clGH~e----FVS~isl~~~~~LlS 210 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF-------------CLGHKE----FVSTISLTDNYLLLS 210 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh-------------ccccHh----heeeeeeccCceeee
Confidence 579999999999999999999999999999777655555444 467874 45667888888 899
Q ss_pred EECCCcEEEEECCCCc
Q 000055 2530 CGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2530 GS~DGtIrIWDL~sg~ 2545 (2548)
||+|++|++||+.+|.
T Consensus 211 ~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGK 226 (390)
T ss_pred cCCCCcEEEEecccCC
Confidence 9999999999999875
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.00 E-value=0.0023 Score=78.96 Aligned_cols=265 Identities=10% Similarity=0.124 Sum_probs=164.5
Q ss_pred CCeEEEEEcCCCce-eEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC---CCcEEEEEcCCC-cccccccCccc
Q 000055 2240 NTHIYLWEFGKDKA-TATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---DGTVCTWQLEVG-GRSNVRPMESC 2314 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~-l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~---DGtVrVWDl~tg-k~i~i~p~~s~ 2314 (2548)
+.-|++|++++..- +.... ...+.+.++=|+|+|+++.|.++-. +|.|..|.++.. ..... ...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~--------~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~---ln~ 83 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ--------LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF---LNR 83 (346)
T ss_pred CCceEEEEEeCcccccchhh--------hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE---eec
Confidence 56699999984322 11111 1123478899999999999988855 478888888742 22211 112
Q ss_pred eeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCC----------eEEEEEccCCCCCC
Q 000055 2315 LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGG----------ARSISVFDNDLGSG 2382 (2548)
Q Consensus 2315 ~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~----------VtSLafsP~dlg~g 2382 (2548)
....++...=.+++++|++++++.+ ..|.|.++-++.. +. ....+..|.+. +.+..+.|+
T Consensus 84 ~~~~g~~p~yvsvd~~g~~vf~AnY--~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~----- 155 (346)
T COG2706 84 QTLPGSPPCYVSVDEDGRFVFVANY--HSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD----- 155 (346)
T ss_pred cccCCCCCeEEEECCCCCEEEEEEc--cCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCC-----
Confidence 2234444322358999999999975 4699999998752 32 22233356655 888899998
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC---ccCCCCCceEEEccc-------
Q 000055 2383 SVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG---SKPGDQNGMLWYIPK------- 2451 (2548)
Q Consensus 2383 s~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~---v~s~D~sv~Iwdi~~------- 2451 (2548)
+++|++.. .-..|.+|++ ..|+....- ..........+.++|+|+|++ +..-++++.+|....
T Consensus 156 --~~~l~v~DLG~Dri~~y~~---~dg~L~~~~-~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 156 --GRYLVVPDLGTDRIFLYDL---DDGKLTPAD-PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred --CCEEEEeecCCceEEEEEc---ccCcccccc-ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence 67777765 3457899994 444433221 122234455678999999998 666777887776322
Q ss_pred ---------C--CCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEE
Q 000055 2452 ---------A--HLGSVTRISTVPNTSLFLTGSK-DGDVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVT 2518 (2548)
Q Consensus 2452 ---------g--H~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vt 2518 (2548)
. -..+..+|..+|+|++|.++.. ...|.++.+.. +..+..+. .. . ..|+. -.
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~-~~---~-----teg~~------PR 294 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG-IT---P-----TEGQF------PR 294 (346)
T ss_pred eeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE-Ee---c-----cCCcC------Cc
Confidence 1 2346678889999999998854 33788887753 22232221 00 0 01111 13
Q ss_pred EEEEcCCe--EE-EEECCCcEEEEECCCC
Q 000055 2519 DIQVVSRG--FL-SCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2519 sLafSPdG--La-SGS~DGtIrIWDL~sg 2544 (2548)
+..++++| |+ +.=.+.+|.+|..+..
T Consensus 295 ~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 295 DFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred cceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 44788888 44 4444567999888643
No 267
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.98 E-value=0.00044 Score=87.31 Aligned_cols=235 Identities=14% Similarity=0.113 Sum_probs=149.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC--------
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-------- 2293 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG-------- 2293 (2548)
+..+.++|.|.+|++....| |.+|.-..+..+..+. | ..|..+.|+|.+++|.|=+..+
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-----------~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-----------H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEI 101 (561)
T ss_pred hhheeecCcchheehhhccc-eEEccccchhheeeee-----------c-CCceecccCcccceeeeeccCCccChhhcc
Confidence 67888999999999876654 8899877665555543 2 6799999999999999865543
Q ss_pred -------cEEEEEcCCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeee
Q 000055 2294 -------TVCTWQLEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASIT 2363 (2548)
Q Consensus 2294 -------tVrVWDl~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~ 2363 (2548)
.+.+||+.+|..+..... . -..... .+..|+-+.+++|-. -...++|+++ ++... +.+.++
T Consensus 102 sp~~~~n~~~vwd~~sg~iv~sf~~---~-~q~~~~Wp~~k~s~~D~y~ARv----v~~sl~i~e~-t~n~~~~p~~~lr 172 (561)
T COG5354 102 SPFTSKNNVFVWDIASGMIVFSFNG---I-SQPYLGWPVLKFSIDDKYVARV----VGSSLYIHEI-TDNIEEHPFKNLR 172 (561)
T ss_pred CCccccCceeEEeccCceeEeeccc---c-CCcccccceeeeeecchhhhhh----ccCeEEEEec-CCccccCchhhcc
Confidence 489999998864322110 0 001112 255677787777654 2467999996 32111 223332
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEE-----EeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--
Q 000055 2364 CHEGGARSISVFDNDLGSGSVSPLIVT-----GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-- 2436 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVS-----GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-- 2436 (2548)
..++....++|.. ++..|+. ++.++.+++|.+. .++.+.+.... ....+.+-|.+.|.+
T Consensus 173 --~~gi~dFsisP~~-----n~~~la~~tPEk~~kpa~~~i~sIp---~~s~l~tk~lf----k~~~~qLkW~~~g~~ll 238 (561)
T COG5354 173 --PVGILDFSISPEG-----NHDELAYWTPEKLNKPAMVRILSIP---KNSVLVTKNLF----KVSGVQLKWQVLGKYLL 238 (561)
T ss_pred --ccceeeEEecCCC-----CCceEEEEccccCCCCcEEEEEEcc---CCCeeeeeeeE----eecccEEEEecCCceEE
Confidence 4678888888872 2455553 5688999999964 33433332100 111233444555554
Q ss_pred -----------ccCCCCCceEEEcc-------cCCCCCEEEEEEeCCCCEEEEEe--CCCcEEEEECCCCcEEEEec
Q 000055 2437 -----------SKPGDQNGMLWYIP-------KAHLGSVTRISTVPNTSLFLTGS--KDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2437 -----------v~s~D~sv~Iwdi~-------~gH~~~VtsLafSPdG~~LaSGS--~DGtIrIWDl~Tgell~tL~ 2493 (2548)
...+..+++++++. .+-.++|...+|.|.++.+++.+ .+..+.++|++.+ ++..++
T Consensus 239 ~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P 314 (561)
T COG5354 239 VLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP 314 (561)
T ss_pred EEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC
Confidence 11223455666642 24578999999999988776655 5889999999865 666554
No 268
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.98 E-value=0.0001 Score=93.49 Aligned_cols=199 Identities=17% Similarity=0.231 Sum_probs=135.3
Q ss_pred EEEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2223 RAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2223 ~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+.+|. .-.+++.| ....|+-++++.|+.+..|.. ..+.+++|..++...+|++|+.||.|..||.+
T Consensus 137 RDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~----------~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFET----------DSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred ccccccCCCccEEEee-cCcceEEEEcccccccccccc----------ccccceeeeecCccceEEecccCceEEEecch
Confidence 3444443 33444444 445688889999988877754 22789999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcc-----cEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-eeeccCCCeEEEE
Q 000055 2302 VGGRSNVRPMESCLCFSSHAM-----DVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGGARSIS 2373 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~-----~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-sl~gHs~~VtSLa 2373 (2548)
+......... ......|.. .|++ |+.+|-.+++|. .+|.|.|||+++ .+++. .-.+..-+|..+.
T Consensus 206 ~ksrv~~l~~--~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt---s~G~v~iyDLRa--~~pl~~kdh~~e~pi~~l~ 278 (703)
T KOG2321|consen 206 DKSRVGTLDA--ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT---STGSVLIYDLRA--SKPLLVKDHGYELPIKKLD 278 (703)
T ss_pred hhhhheeeec--ccccCCCccccccCcceEEEecCCceeEEeec---cCCcEEEEEccc--CCceeecccCCccceeeec
Confidence 6643322111 111222222 3554 777788888875 899999999997 34432 2223345788899
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000055 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
|.+.+ ..+.++| .....++||| -.+|+..... ..
T Consensus 279 ~~~~~-----~q~~v~S-~Dk~~~kiWd---~~~Gk~~asi-------------------------------------Ep 312 (703)
T KOG2321|consen 279 WQDTD-----QQNKVVS-MDKRILKIWD---ECTGKPMASI-------------------------------------EP 312 (703)
T ss_pred ccccC-----CCceEEe-cchHHhhhcc---cccCCceeec-------------------------------------cc
Confidence 87774 1335555 4467899999 6666665443 12
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000055 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
...+..+++-|++.++++|-.++.+..|=+..
T Consensus 313 t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 313 TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 34578889999999999999888887776554
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=0.00043 Score=87.66 Aligned_cols=264 Identities=13% Similarity=0.158 Sum_probs=161.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---------
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD--------- 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D--------- 2292 (2548)
-+-+.|||.|.||+|--..| |.+|--.+-..++.| .| ..|.-+.|||..++|+|=+..
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-----------~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~ 279 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-----------YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDN 279 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc-----------cC-CCceeeecCCccceEEEecCCccccCcccC
Confidence 46789999999999988877 778975544333333 24 569999999999999986542
Q ss_pred --CcEEEEEcCCCcccccccCccceeccC--CcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCC
Q 000055 2293 --GTVCTWQLEVGGRSNVRPMESCLCFSS--HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGG 2368 (2548)
Q Consensus 2293 --GtVrVWDl~tgk~i~i~p~~s~~t~~g--H~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~ 2368 (2548)
..++|||+.+|...... .++.+ ..-++..||.|++++|--+ ...|.|++... ...+..-.-.-.+
T Consensus 280 e~~~l~IWDI~tG~lkrsF-----~~~~~~~~~WP~frWS~DdKy~Arm~----~~sisIyEtps--f~lld~Kslki~g 348 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSF-----PVIKSPYLKWPIFRWSHDDKYFARMT----GNSISIYETPS--FMLLDKKSLKISG 348 (698)
T ss_pred CCceEEEEEccccchhcce-----eccCCCccccceEEeccCCceeEEec----cceEEEEecCc--eeeecccccCCcc
Confidence 48999999999643221 11111 1124445899999999864 57899998743 2222111123467
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEe--C---CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCcc-----
Q 000055 2369 ARSISVFDNDLGSGSVSPLIVTGG--K---GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSK----- 2438 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS--~---DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~----- 2438 (2548)
|....|+|. +++|+-=. . -..+.+-. +.+++.+++.+... ...+.+.|..+|.+++
T Consensus 349 Ir~FswsP~-------~~llAYwtpe~~~~parvtL~e---vPs~~~iRt~nlfn----VsDckLhWQk~gdyLcvkvdR 414 (698)
T KOG2314|consen 349 IRDFSWSPT-------SNLLAYWTPETNNIPARVTLME---VPSKREIRTKNLFN----VSDCKLHWQKSGDYLCVKVDR 414 (698)
T ss_pred ccCcccCCC-------cceEEEEcccccCCcceEEEEe---cCccceeeecccee----eeccEEEeccCCcEEEEEEEe
Confidence 888899988 45655322 1 12344444 44455554431111 1224455666666521
Q ss_pred -------CCCCCceEEEccc--------CCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEECCC----CcEEEEecccc
Q 000055 2439 -------PGDQNGMLWYIPK--------AHLGSVTRISTVPNTSLFLTGSK---DGDVKLWDAKA----AQLVYHWSKLH 2496 (2548)
Q Consensus 2439 -------s~D~sv~Iwdi~~--------gH~~~VtsLafSPdG~~LaSGS~---DGtIrIWDl~T----gell~tL~~~H 2496 (2548)
+.-.+..|+.+.. .-...|...+|.|.|.-+++-+. ..++.+|.+.+ -+++.+++
T Consensus 415 ~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--- 491 (698)
T KOG2314|consen 415 HTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--- 491 (698)
T ss_pred eccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc---
Confidence 1112234444322 23557888999999988877654 45788888773 22333332
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe--EE---EEECCCcEEEEECCC
Q 000055 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL---SCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La---SGS~DGtIrIWDL~s 2543 (2548)
+-| .+.+-|+|.| ++ -+|..|.+.++|++.
T Consensus 492 ----------k~~-------~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 492 ----------KKF-------ANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred ----------ccc-------cceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 111 3456899999 32 335689999999873
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.95 E-value=0.0016 Score=82.36 Aligned_cols=243 Identities=8% Similarity=-0.073 Sum_probs=136.3
Q ss_pred EcCCCCEEEEEE----------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-C-CCc
Q 000055 2227 SHPLRPFFLVGS----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-L-DGT 2294 (2548)
Q Consensus 2227 fSPdG~~LASGS----------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~-DGt 2294 (2548)
.+|||+.+.++. .+..|.+||..+++.+..+..-+. +.......-..++++|||+++++.. . +..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~---p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG---PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC---chhhccCccceEEECCCCCEEEEecCCCCCE
Confidence 679998877654 588999999999999888754211 1111123455789999999999876 3 689
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc-ce---eeeccCCCeE
Q 000055 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS-RA---SITCHEGGAR 2370 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~-v~---sl~gHs~~Vt 2370 (2548)
|.+.|+.+++.+...+. +-...+...+.+... +-+ .||......+... ++. .. .+.+....+.
T Consensus 130 V~VvD~~~~kvv~ei~v-------p~~~~vy~t~e~~~~-~~~----~Dg~~~~v~~d~~-g~~~~~~~~vf~~~~~~v~ 196 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDV-------PDCYHIFPTANDTFF-MHC----RDGSLAKVGYGTK-GNPKIKPTEVFHPEDEYLI 196 (352)
T ss_pred EEEEECCCCcEEEEEeC-------CCCcEEEEecCCccE-EEe----ecCceEEEEecCC-CceEEeeeeeecCCccccc
Confidence 99999998875442221 111112212222222 222 1333333222211 110 11 1111000000
Q ss_pred E-EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc--cccCceeeeecCC---CCCCCccccccccCCCCCC--ccC---
Q 000055 2371 S-ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY--IATGKTKKHKHSD---RGGSSINTCAHADAQTGSG--SKP--- 2439 (2548)
Q Consensus 2371 S-LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~--l~TGk~l~tl~~~---~~~s~~~~~~vafSpdGk~--v~s--- 2439 (2548)
. -.|.+.+ +.++..... |+|.+.|+.. ....+....+... ..........++++++|+. +..
T Consensus 197 ~rP~~~~~d------g~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~ 269 (352)
T TIGR02658 197 NHPAYSNKS------GRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQR 269 (352)
T ss_pred cCCceEcCC------CcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCC
Confidence 0 0334532 566666555 9999999532 1111222221111 1222333344889999887 311
Q ss_pred -------CCCCceEEEcccC-------CCCCEEEEEEeCCCC-EEEEEe-CCCcEEEEECCCCcEEEEe
Q 000055 2440 -------GDQNGMLWYIPKA-------HLGSVTRISTVPNTS-LFLTGS-KDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2440 -------~D~sv~Iwdi~~g-------H~~~VtsLafSPdG~-~LaSGS-~DGtIrIWDl~Tgell~tL 2492 (2548)
..+.+.++|..+. -...+..++++||++ +|++.. .++.|.+.|..+++.+.++
T Consensus 270 ~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 270 AKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 1134556664321 234788999999999 888776 5889999999999999877
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.93 E-value=0.0011 Score=94.97 Aligned_cols=230 Identities=12% Similarity=0.087 Sum_probs=133.4
Q ss_pred EEEEEcCCCCEEEEE-ECCCeEEEEEcCCCceeEEEecc--CCCCCCCC-----CCCCCeEEEEEcc-CCCEEEEEeCCC
Q 000055 2223 RAFSSHPLRPFFLVG-SSNTHIYLWEFGKDKATATYGVL--PAANVPPP-----YALASISALQFDH-YGHRFASAALDG 2293 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASG-S~DGsVrLWDl~tg~~l~t~~~l--~ghs~~~~-----~H~~~VtsVaFSP-dG~~LaSGS~DG 2293 (2548)
..+++++++..|.++ ..++.|+++|..++. +.++... .+...... .....-..++|+| ++..+++.+.++
T Consensus 627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 566777888765544 456789999987764 3343221 00000000 0012346899999 566667777889
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcc--------cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-----
Q 000055 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAM--------DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA----- 2360 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~--------~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~----- 2360 (2548)
.|++||..++...............++.. .-.+++|+|+.++++. +.++.|++||+.+.....+.
T Consensus 706 ~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD--s~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 706 QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD--SESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecccc
Confidence 99999987664221110000000111110 1134789998666665 47899999998752111000
Q ss_pred ------eeecc--------CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000055 2361 ------SITCH--------EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2361 ------sl~gH--------s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
.+-.+ -.....+++.++ +.++++-+.++.|++|| ..++...... ..+.
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d-------G~LYVADs~N~rIrviD---~~tg~v~tia-G~G~------- 845 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD-------GQIYVADSYNHKIKKLD---PATKRVTTLA-GTGK------- 845 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCC-------CcEEEEECCCCEEEEEE---CCCCeEEEEe-ccCC-------
Confidence 00000 112356777776 67888889999999999 4444443222 0000
Q ss_pred ccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcE
Q 000055 2427 AHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQL 2488 (2548)
Q Consensus 2427 ~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgel 2488 (2548)
.-..+|.. ..++-.....|+++++|+++++-+.++.|++||+.+++.
T Consensus 846 --~G~~dG~~-------------~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 846 --AGFKDGKA-------------LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred --cCCCCCcc-------------cccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 00001110 123344667999999999999988999999999998875
No 272
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.93 E-value=7.4e-05 Score=92.16 Aligned_cols=168 Identities=17% Similarity=0.222 Sum_probs=111.9
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCC
Q 000055 2274 ISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLA 2353 (2548)
Q Consensus 2274 VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t 2353 (2548)
...+..++.++++|++..++...+++.....+. .......+.......+.+...+...+++-... +...+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~--~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkag-D~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKG--AKLLDVSCVPKRPTAISFIREDTSVLVADKAG-DVYSFDILSADS 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCc--ceeeeEeecccCcceeeeeeccceEEEEeecC-Cceeeeeecccc
Confidence 444556677888888888888777777644320 11111223333344444444343333332211 556666666543
Q ss_pred CCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC
Q 000055 2354 PPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT 2433 (2548)
Q Consensus 2354 ~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd 2433 (2548)
.+...+-||-+-++.|+++|+ ++.|+++..|..|++-.... --.+..+
T Consensus 142 ---~~~~~~lGhvSml~dVavS~D-------~~~IitaDRDEkIRvs~ypa---~f~Iesf------------------- 189 (390)
T KOG3914|consen 142 ---GRCEPILGHVSMLLDVAVSPD-------DQFIITADRDEKIRVSRYPA---TFVIESF------------------- 189 (390)
T ss_pred ---cCcchhhhhhhhhheeeecCC-------CCEEEEecCCceEEEEecCc---ccchhhh-------------------
Confidence 344556699999999999999 68999999999999977431 1111111
Q ss_pred CCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000055 2434 GSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2434 Gk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
..||+.-|..++.-++ ..|++||.|++|++||+.+|+.+.++.
T Consensus 190 ----------------clGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 190 ----------------CLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ----------------ccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence 2689999999998764 558999999999999999999998774
No 273
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.89 E-value=0.0038 Score=79.20 Aligned_cols=224 Identities=12% Similarity=0.145 Sum_probs=133.4
Q ss_pred EEEEEEcCCCCEEEEEE-CCCeEEEEEcCC-CceeEEEecc--CCCC-CCCCCCCCCeEEEEEccCCCEEEEEeC-CCcE
Q 000055 2222 TRAFSSHPLRPFFLVGS-SNTHIYLWEFGK-DKATATYGVL--PAAN-VPPPYALASISALQFDHYGHRFASAAL-DGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS-~DGsVrLWDl~t-g~~l~t~~~l--~ghs-~~~~~H~~~VtsVaFSPdG~~LaSGS~-DGtV 2295 (2548)
.+.++.+|++++|+++. .+|+|.++++.. |......... .+.. .+.........++.|+|+|+++++... ...|
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV 168 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence 46788889999999886 589999999986 4433332111 1100 001112355789999999998888754 3489
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeec----c--CC
Q 000055 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITC----H--EG 2367 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~g----H--s~ 2367 (2548)
.+|+++..... ..+........+..-+=..|+|+++++.+.. -.++.|.++++....+. .+..+.. . ..
T Consensus 169 ~~~~~~~~~~~-l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~--e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 169 YVYDIDDDTGK-LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN--ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp EEEEE-TTS-T-EEEEEEEECSTTSSEEEEEE-TTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred EEEEEeCCCce-EEEeeccccccCCCCcEEEEcCCcCEEEEec--CCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence 99999765411 1111111112222223345999999888876 37889999998732232 2222221 1 12
Q ss_pred CeEEEEEccCCCCCCCCCCEEE-EEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceE
Q 000055 2368 GARSISVFDNDLGSGSVSPLIV-TGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGML 2446 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLV-SGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~I 2446 (2548)
....|.++|+ +++|. +...+++|.+|++. ..+|+....
T Consensus 246 ~~~~i~ispd-------g~~lyvsnr~~~sI~vf~~d-~~~g~l~~~--------------------------------- 284 (345)
T PF10282_consen 246 APAEIAISPD-------GRFLYVSNRGSNSISVFDLD-PATGTLTLV--------------------------------- 284 (345)
T ss_dssp SEEEEEE-TT-------SSEEEEEECTTTEEEEEEEC-TTTTTEEEE---------------------------------
T ss_pred CceeEEEecC-------CCEEEEEeccCCEEEEEEEe-cCCCceEEE---------------------------------
Confidence 5788999998 56555 45567889999963 122332111
Q ss_pred EEcccCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEEC--CCCcEEE
Q 000055 2447 WYIPKAHLGSVTRISTVPNTSLFLTGSK-DGDVKLWDA--KAAQLVY 2490 (2548)
Q Consensus 2447 wdi~~gH~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl--~Tgell~ 2490 (2548)
.........-+.++++|+|++|+++.. ++.|.+|++ .+|.+..
T Consensus 285 -~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 285 -QTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp -EEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred -EEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 111112334689999999999998875 678999866 5777654
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.87 E-value=0.0033 Score=88.65 Aligned_cols=296 Identities=13% Similarity=0.070 Sum_probs=172.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEE----EcCCC--ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLW----EFGKD--KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLW----Dl~tg--~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtV 2295 (2548)
+.++.|-++..-++.+..+|.|.+. +..+. +.+..+ ...|.+++||||+..++.+..+|+|
T Consensus 78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v-------------d~GI~a~~WSPD~Ella~vT~~~~l 144 (928)
T PF04762_consen 78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV-------------DSGILAASWSPDEELLALVTGEGNL 144 (928)
T ss_pred EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE-------------cCcEEEEEECCCcCEEEEEeCCCEE
Confidence 6899999999999999999999999 44332 223333 2689999999999999999999988
Q ss_pred EEEEcC---------------C--------Cccccc--------------ccCcc---ceeccCCcccE-EEEcCCCCEE
Q 000055 2296 CTWQLE---------------V--------GGRSNV--------------RPMES---CLCFSSHAMDV-SYITSSGSVI 2334 (2548)
Q Consensus 2296 rVWDl~---------------t--------gk~i~i--------------~p~~s---~~t~~gH~~~V-~afSpdGslL 2334 (2548)
.+-+-. . |++... .|... .....-....+ .+|..||.++
T Consensus 145 ~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yF 224 (928)
T PF04762_consen 145 LLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYF 224 (928)
T ss_pred EEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEE
Confidence 765321 0 110000 00000 00011111222 2588899999
Q ss_pred EEEeccC-C--CCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC---CCcEEEEeCCccccC
Q 000055 2335 AAAGHSS-N--GINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGK---GGDVGIHDFRYIATG 2408 (2548)
Q Consensus 2335 ATgG~SS-~--DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~---DGtVrLWDLR~l~TG 2408 (2548)
|+..... . -+.++||+-. +....+-..-.+--.+++|-|. |++|++.-. ...|.+|.- .|
T Consensus 225 AVss~~~~~~~~R~iRVy~Re---G~L~stSE~v~gLe~~l~WrPs-------G~lIA~~q~~~~~~~VvFfEr----NG 290 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSRE---GELQSTSEPVDGLEGALSWRPS-------GNLIASSQRLPDRHDVVFFER----NG 290 (928)
T ss_pred EEEEEEcCCCceeEEEEECCC---ceEEeccccCCCccCCccCCCC-------CCEEEEEEEcCCCcEEEEEec----CC
Confidence 9875311 2 3689999975 2222222222233356889888 788888764 456777762 23
Q ss_pred ceeeeecCCCCCCCccccccccCCCCCCcc-CCCCCceEEEcccC-----------CCCCEEEEEEeCC-CCEEEEEeCC
Q 000055 2409 KTKKHKHSDRGGSSINTCAHADAQTGSGSK-PGDQNGMLWYIPKA-----------HLGSVTRISTVPN-TSLFLTGSKD 2475 (2548)
Q Consensus 2409 k~l~tl~~~~~~s~~~~~~vafSpdGk~v~-s~D~sv~Iwdi~~g-----------H~~~VtsLafSPd-G~~LaSGS~D 2475 (2548)
-....+.............+.|++|+..++ .....+.+|..-.- ....+..+.|+|. ...|..++.+
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~ 370 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSN 370 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecC
Confidence 333333222222333446789999999832 22345888864322 2334556999995 4557777776
Q ss_pred CcEEEEE----CCCC--------cEEEEecccccccc-----cccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcE
Q 000055 2476 GDVKLWD----AKAA--------QLVYHWSKLHERHT-----FLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSV 2536 (2548)
Q Consensus 2476 GtIrIWD----l~Tg--------ell~tL~~~Hs~hs-----fl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtI 2536 (2548)
|.+..++ +..+ ..+..+.+..-.-+ ..-|-+..+.=...+.|.+++|++++ +++-..||+|
T Consensus 371 g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l 450 (928)
T PF04762_consen 371 GQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSL 450 (928)
T ss_pred CcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCE
Confidence 7776543 3222 12333322111100 00111111111223457889999998 9999999999
Q ss_pred EEEECCCC
Q 000055 2537 KLIQLEDY 2544 (2548)
Q Consensus 2537 rIWDL~sg 2544 (2548)
.+|+.+.+
T Consensus 451 ~~~~~~~~ 458 (928)
T PF04762_consen 451 SIYEWDLK 458 (928)
T ss_pred EEEEecCC
Confidence 99996543
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.86 E-value=0.00078 Score=86.67 Aligned_cols=236 Identities=11% Similarity=0.054 Sum_probs=142.8
Q ss_pred CCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCC-----CCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000055 2218 ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAA-----NVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2218 ~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~gh-----s~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
+++...|++|+....|+|.|+.||.+++-.+.+...-...+++... +....+|.+.|.-+.|+.+...|-|.+.+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4556799999999999999999999999998865433222221111 11356788999999999999999999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcc-cEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc--eeeeccCC
Q 000055 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAM-DVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR--ASITCHEG 2367 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~-~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v--~sl~gHs~ 2367 (2548)
|.|.+|-+-.|+-.. ...+.... -|. +|+.+|..|+.+- .||.|.+=.+.. ..+ ..+++ .
T Consensus 93 GlIiVWmlykgsW~E-------EMiNnRnKSvV~SmsWn~dG~kIcIvY---eDGavIVGsvdG---NRIwgKeLkg--~ 157 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCE-------EMINNRNKSVVVSMSWNLDGTKICIVY---EDGAVIVGSVDG---NRIWGKELKG--Q 157 (1189)
T ss_pred ceEEEEeeecccHHH-------HHhhCcCccEEEEEEEcCCCcEEEEEE---ccCCEEEEeecc---ceecchhcch--h
Confidence 999999987664211 01222222 232 4888999888875 788887766542 111 11221 2
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc-----cccCceeeee---cC---CCCCCCcc-c-cccccCCCC
Q 000055 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY-----IATGKTKKHK---HS---DRGGSSIN-T-CAHADAQTG 2434 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~-----l~TGk~l~tl---~~---~~~~s~~~-~-~~vafSpdG 2434 (2548)
-...+.|+++ ..++..+-.+|.+.++|... +.. .+.... .+ ........ . +.....||.
T Consensus 158 ~l~hv~ws~D-------~~~~Lf~~ange~hlydnqgnF~~Kl~~-~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr 229 (1189)
T KOG2041|consen 158 LLAHVLWSED-------LEQALFKKANGETHLYDNQGNFERKLEK-DCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR 229 (1189)
T ss_pred eccceeeccc-------HHHHHhhhcCCcEEEecccccHHHhhhh-ceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence 2346788888 45666777789999999521 000 110000 00 00000000 0 111122233
Q ss_pred CC--ccCCCCCceEEEcccC-------CCCCEEEEEEeCCCCEEEEEeCCC
Q 000055 2435 SG--SKPGDQNGMLWYIPKA-------HLGSVTRISTVPNTSLFLTGSKDG 2476 (2548)
Q Consensus 2435 k~--v~s~D~sv~Iwdi~~g-------H~~~VtsLafSPdG~~LaSGS~DG 2476 (2548)
.. ++..+|...|.+.... -.-.|....|+++|..|+.+|.|.
T Consensus 230 P~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 230 PRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcc
Confidence 22 4445555555442221 123567889999999999998753
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.81 E-value=0.0039 Score=79.71 Aligned_cols=255 Identities=12% Similarity=0.063 Sum_probs=138.9
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000055 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
++..++.++.+|.+..+|..+|+.+-.... . +.+.+.-.. .+..++.++.||.|..||.++|+..-..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~----------~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 171 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL-S----------SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTY 171 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeecc-C----------ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEE
Confidence 466788889999999999999988766432 1 112111001 3556788888999999999988643221
Q ss_pred cCcc-ceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc-CC---C---eEEEEEccCCCCC
Q 000055 2310 PMES-CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH-EG---G---ARSISVFDNDLGS 2381 (2548)
Q Consensus 2310 p~~s-~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH-s~---~---VtSLafsP~dlg~ 2381 (2548)
.... ..........+. .++ .++.+. .++.+..+|.++ ++.+...... .. . ...+.-.|.
T Consensus 172 ~~~~~~~~~~~~~sp~~---~~~-~v~~~~---~~g~v~ald~~t--G~~~W~~~~~~~~g~~~~~~~~~~~~~p~---- 238 (377)
T TIGR03300 172 SRVTPALTLRGSASPVI---ADG-GVLVGF---AGGKLVALDLQT--GQPLWEQRVALPKGRTELERLVDVDGDPV---- 238 (377)
T ss_pred ccCCCceeecCCCCCEE---ECC-EEEEEC---CCCEEEEEEccC--CCEeeeeccccCCCCCchhhhhccCCccE----
Confidence 1100 000111111111 133 455543 678899999876 3332221100 00 0 000000110
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEcccCC-------
Q 000055 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYIPKAH------- 2453 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~~gH------- 2453 (2548)
..+..+..++.+|.+..+| ..+|+.+-..... . ....... ++.. +...++.+..++...+.
T Consensus 239 -~~~~~vy~~~~~g~l~a~d---~~tG~~~W~~~~~-~-----~~~p~~~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~ 307 (377)
T TIGR03300 239 -VDGGQVYAVSYQGRVAALD---LRSGRVLWKRDAS-S-----YQGPAVD-DNRLYVTDADGVVVALDRRSGSELWKNDE 307 (377)
T ss_pred -EECCEEEEEEcCCEEEEEE---CCCCcEEEeeccC-C-----ccCceEe-CCEEEEECCCCeEEEEECCCCcEEEcccc
Confidence 0134788888899999999 5677766544210 0 1111111 2222 44455555555543221
Q ss_pred --CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEE
Q 000055 2454 --LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCG 2531 (2548)
Q Consensus 2454 --~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS 2531 (2548)
.....+... .+..+++++.||.|.++|..+|+.+.+++ -++..+.+ ...+..+.|+.++
T Consensus 308 ~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~--------------~~~~~~~~---sp~~~~~~l~v~~ 368 (377)
T TIGR03300 308 LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK--------------TDGSGIAS---PPVVVGDGLLVQT 368 (377)
T ss_pred ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE--------------cCCCcccc---CCEEECCEEEEEe
Confidence 111111111 46788999999999999999999998773 11111111 1134445588999
Q ss_pred CCCcEEEE
Q 000055 2532 GDGSVKLI 2539 (2548)
Q Consensus 2532 ~DGtIrIW 2539 (2548)
.||.|..+
T Consensus 369 ~dG~l~~~ 376 (377)
T TIGR03300 369 RDGDLYAF 376 (377)
T ss_pred CCceEEEe
Confidence 99999876
No 277
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.80 E-value=0.0054 Score=74.00 Aligned_cols=228 Identities=13% Similarity=0.137 Sum_probs=125.7
Q ss_pred EEcCCCCEEEEEECCCeEEEEEcCCC--ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 000055 2226 SSHPLRPFFLVGSSNTHIYLWEFGKD--KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVG 2303 (2548)
Q Consensus 2226 sfSPdG~~LASGS~DGsVrLWDl~tg--~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tg 2303 (2548)
+.+.+|+.||. -+|..|-|-...+. ..+......... ...=+.++|+||+..||.+...|+|+++|+...
T Consensus 4 ~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~-------~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 4 ALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDP-------NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS 75 (282)
T ss_pred eecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCC-------CchheEEEECCCCcEEEEEcCCCeEEEEecccc
Confidence 34578887775 45666766655432 223333321111 134678999999999999999999999999754
Q ss_pred cccccccCccceeccCC-cccEE---EEcC------CCCEEEEEeccCCCCeEEEEECCCC---CCCcceeee---ccCC
Q 000055 2304 GRSNVRPMESCLCFSSH-AMDVS---YITS------SGSVIAAAGHSSNGINVVVWDTLAP---PTSSRASIT---CHEG 2367 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH-~~~V~---afSp------dGslLATgG~SS~DGtVrIWDl~t~---~~k~v~sl~---gHs~ 2367 (2548)
..-.+.|.. .+.+- ...|. +... .-.+++.. .+|.++=|-+... ..+.-+.+. .+..
T Consensus 76 ~lf~I~p~~---~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~----Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~ 148 (282)
T PF15492_consen 76 ELFVIPPAM---SFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN----YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPH 148 (282)
T ss_pred eeEEcCccc---ccCCccccceeeeEeeccccccccceeEEEEe----ccceeeeEEEEcccCCcceeeEEEEecccCCC
Confidence 332222211 11111 12222 1111 12344443 5677776664321 122233333 2467
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeC-CCc----------EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000055 2368 GARSISVFDNDLGSGSVSPLIVTGGK-GGD----------VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~-DGt----------VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
+|.++.|+|.+ ++|+.||. ... +.-|.+ -.+... ...+.-..++.
T Consensus 149 Gi~~~vy~p~h-------~LLlVgG~~~~~~~~s~a~~~GLtaWRi---L~~~Py-------------yk~v~~~~~~~- 204 (282)
T PF15492_consen 149 GINSAVYHPKH-------RLLLVGGCEQNQDGMSKASSCGLTAWRI---LSDSPY-------------YKQVTSSEDDI- 204 (282)
T ss_pred ceeEEEEcCCC-------CEEEEeccCCCCCccccccccCceEEEE---cCCCCc-------------EEEccccCccc-
Confidence 99999999994 56666553 221 223331 111110 00001011111
Q ss_pred ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000055 2437 SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2437 v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.....+..++++ .......|..|..+|||..||+...+|.|.+|++.+-++...++
T Consensus 205 -~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 205 -TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred -cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 000001112221 12346789999999999999999999999999999888877763
No 278
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.80 E-value=0.0027 Score=81.14 Aligned_cols=260 Identities=11% Similarity=0.021 Sum_probs=143.7
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccccc
Q 000055 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p 2310 (2548)
+..+++++.+|.|.-+|..+|+.+-.+..... ... ... .++..++.++.||.+..+|.++|+..-...
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~-------~~~---~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 132 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDER-------LSG---GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAK 132 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCC-------ccc---ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeec
Confidence 56788889999999999999988766543110 001 111 246778899999999999999886432211
Q ss_pred CccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE--EccCCCCCCCCCC
Q 000055 2311 MESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS--VFDNDLGSGSVSP 2386 (2548)
Q Consensus 2311 ~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa--fsP~dlg~gs~g~ 2386 (2548)
.. ..+.+ .- .+..++.+. .++.+..||..+ ++.+-.+........ +. -+|. ..+.
T Consensus 133 ------~~---~~~~~~p~v-~~~~v~v~~---~~g~l~a~d~~t--G~~~W~~~~~~~~~~-~~~~~sp~-----~~~~ 191 (377)
T TIGR03300 133 ------LS---SEVLSPPLV-ANGLVVVRT---NDGRLTALDAAT--GERLWTYSRVTPALT-LRGSASPV-----IADG 191 (377)
T ss_pred ------cC---ceeecCCEE-ECCEEEEEC---CCCeEEEEEcCC--CceeeEEccCCCcee-ecCCCCCE-----EECC
Confidence 11 11111 11 233445443 689999999876 444443332221111 10 0010 0023
Q ss_pred EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCc-------cccccccCCCCCC-ccCCCCCceEEEcccCCCC---
Q 000055 2387 LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSI-------NTCAHADAQTGSG-SKPGDQNGMLWYIPKAHLG--- 2455 (2548)
Q Consensus 2387 lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~-------~~~~vafSpdGk~-v~s~D~sv~Iwdi~~gH~~--- 2455 (2548)
.++.+..+|.+..+| ..+|+.+-........... ......+. ++.. +...++.++.++...+...
T Consensus 192 ~v~~~~~~g~v~ald---~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 192 GVLVGFAGGKLVALD---LQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEECCCCEEEEEE---ccCCCEeeeeccccCCCCCchhhhhccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEee
Confidence 678888899999999 5567665432111000000 00000111 2222 4444555666665333211
Q ss_pred ---CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEEC
Q 000055 2456 ---SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGG 2532 (2548)
Q Consensus 2456 ---~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~ 2532 (2548)
..... ...+..++.++.||.|..+|..+|+.+...+. +.+. ..... ....+.+++++.
T Consensus 268 ~~~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~-----------~~~~--~~ssp----~i~g~~l~~~~~ 328 (377)
T TIGR03300 268 DASSYQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDE-----------LKYR--QLTAP----AVVGGYLVVGDF 328 (377)
T ss_pred ccCCccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEcccc-----------ccCC--ccccC----EEECCEEEEEeC
Confidence 11111 12467788888999999999999988764410 0110 01011 222233888999
Q ss_pred CCcEEEEECCCCcc
Q 000055 2533 DGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2533 DGtIrIWDL~sg~l 2546 (2548)
||.|.++|..++..
T Consensus 329 ~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 329 EGYLHWLSREDGSF 342 (377)
T ss_pred CCEEEEEECCCCCE
Confidence 99999999987754
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=9e-05 Score=92.24 Aligned_cols=213 Identities=16% Similarity=0.203 Sum_probs=132.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+++++--.+.+-+++++.|.+|++|.+.. |..+.+-.+ ...+..|..+|.++.|-.+.++++++ ||-|.+||.
T Consensus 738 iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaC----QfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDP 811 (1034)
T KOG4190|consen 738 IRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSAC----QFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDP 811 (1034)
T ss_pred hHHHHhcccccceeeccCCceEEEEEeccccCcccccee----eeEhhhccCcccceeeeeccceeeec--cCcceeecc
Confidence 34444334667899999999999999873 222221000 01344577999999999888887765 899999998
Q ss_pred CCCcccccccCccceeccCCcccEEEEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceee---eccCCCeEEEEEcc
Q 000055 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI---TCHEGGARSISVFD 2376 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl---~gHs~~VtSLafsP 2376 (2548)
-.+.....- ......+....|.++.. +..++.. |+ +...+|+++|.+.....+.... .+..+.+.++++.+
T Consensus 812 Figr~Laq~---~dapk~~a~~~ikcl~nv~~~iliA-gc-saeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 812 FIGRLLAQM---EDAPKEGAGGNIKCLENVDRHILIA-GC-SAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred cccchhHhh---hcCcccCCCceeEecccCcchheee-ec-cchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 665432210 00111223334555543 4444444 43 3889999999987433332222 24456789999988
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCC
Q 000055 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS 2456 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~ 2456 (2548)
. |+.++.|-.+|.|.+.|.| +|+.+... ...+-.
T Consensus 887 ~-------GN~lAa~LSnGci~~LDaR---~G~vINsw------------------------------------rpmecd 920 (1034)
T KOG4190|consen 887 K-------GNKLAAALSNGCIAILDAR---NGKVINSW------------------------------------RPMECD 920 (1034)
T ss_pred C-------cchhhHHhcCCcEEEEecC---CCceeccC------------------------------------Ccccch
Confidence 8 8899999999999999955 46655433 111111
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEE-EECCCCcEEEEe
Q 000055 2457 VTRISTVPNTSLFLTGSKDGDVKL-WDAKAAQLVYHW 2492 (2548)
Q Consensus 2457 VtsLafSPdG~~LaSGS~DGtIrI-WDl~Tgell~tL 2492 (2548)
...++ .|..+.|+....|.++.| |..-+|....+.
T Consensus 921 llqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 921 LLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred hhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 11221 355667777777778877 877666655444
No 280
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=0.0001 Score=89.09 Aligned_cols=161 Identities=14% Similarity=0.208 Sum_probs=115.5
Q ss_pred EEEEccC--CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEEC
Q 000055 2276 ALQFDHY--GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDT 2351 (2548)
Q Consensus 2276 sVaFSPd--G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl 2351 (2548)
.++|+-+ |-. ++.+.+-.|-+-++++|.... +. ...+|.+ |...++++..|+ .+|.|...|+
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qs---------f~-sksDVfAlQf~~s~nLv~~Gc---RngeI~~iDL 281 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS---------FQ-SKSDVFALQFAGSDNLVFNGC---RNGEIFVIDL 281 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecccccc---------cc-cchhHHHHHhcccCCeeEecc---cCCcEEEEEe
Confidence 3355532 333 556667788899999884322 33 4456665 555677888876 8999999999
Q ss_pred CCCC---CCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000055 2352 LAPP---TSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2352 ~t~~---~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
+... +.+.+.+ -|.+.|+++....-+ ++.|++.+.+|+|++||+|..+.++.+.+.
T Consensus 282 R~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s------~q~LmaS~M~gkikLyD~R~~K~~~~V~qY-------------- 340 (425)
T KOG2695|consen 282 RCRNQGNGWCAQRL-YHDSSVTSLQILQFS------QQKLMASDMTGKIKLYDLRATKCKKSVMQY-------------- 340 (425)
T ss_pred eecccCCCcceEEE-EcCcchhhhhhhccc------cceEeeccCcCceeEeeehhhhcccceeee--------------
Confidence 8631 2233443 589999999876633 679999999999999999987666656554
Q ss_pred ccCCCCCCccCCCCCceEEEcccCCCCCEE--EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000055 2429 ADAQTGSGSKPGDQNGMLWYIPKAHLGSVT--RISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt--sLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.||-..-. -+-.++.+..++++|.|...+||.+++|.++.+++
T Consensus 341 ----------------------eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 341 ----------------------EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred ----------------------ecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 55543222 23356677889999999999999999999999885
No 281
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00038 Score=86.52 Aligned_cols=265 Identities=17% Similarity=0.110 Sum_probs=165.9
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CCcEEEEEcCCCcccccc
Q 000055 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DGtVrVWDl~tgk~i~i~ 2309 (2548)
.+++.+++.||.++.|.-..-.-+.-++.+. .|.+.|.+++.+-+|..+.|.+. |..++++|++.-...+..
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFr-------aHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminmi 92 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFR-------AHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMI 92 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhH-------HHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhc
Confidence 4789999999999999865422222222222 25688999999999999999777 999999999865433211
Q ss_pred cCccceeccCCcccEEEEcCCC---CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCC
Q 000055 2310 PMESCLCFSSHAMDVSYITSSG---SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSP 2386 (2548)
Q Consensus 2310 p~~s~~t~~gH~~~V~afSpdG---slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~ 2386 (2548)
. +.--...+.++...| ..+++.. -+++.+.++|-.....+....-.-|..+|.++.+.+. +.
T Consensus 93 K------L~~lPg~a~wv~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa-------~D 157 (558)
T KOG0882|consen 93 K------LVDLPGFAEWVTSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA-------GD 157 (558)
T ss_pred c------cccCCCceEEecCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeecc-------cc
Confidence 1 111122333333333 2455543 2789999999876433444555569999999999998 77
Q ss_pred EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCC
Q 000055 2387 LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNT 2466 (2548)
Q Consensus 2387 lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG 2466 (2548)
.+++....|.|.-|... + ..+.. .++.........-++.. ........++.|+|+|
T Consensus 158 s~vSiD~~gmVEyWs~e----~-~~qfP------------------r~~l~~~~K~eTdLy~f-~K~Kt~pts~Efsp~g 213 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAE----G-PFQFP------------------RTNLNFELKHETDLYGF-PKAKTEPTSFEFSPDG 213 (558)
T ss_pred ceeeccccceeEeecCC----C-cccCc------------------cccccccccccchhhcc-cccccCccceEEcccc
Confidence 89999999999999943 1 11100 00000000001111111 2234566799999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecccccccccc------------------cCcccCCCCceeecEEEEEEcCCe--
Q 000055 2467 SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFL------------------QPSSRGFGGVVRAGVTDIQVVSRG-- 2526 (2548)
Q Consensus 2467 ~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl------------------~~tl~GH~~~V~a~VtsLafSPdG-- 2526 (2548)
..+.+-+.|..|++++.++|++++.+.......... .+.+.-|+..+ -+.+.|+..|
T Consensus 214 ~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~---~~~~~fdes~~f 290 (558)
T KOG0882|consen 214 AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTV---GTNAVFDESGNF 290 (558)
T ss_pred CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcc---cceeEEcCCCCE
Confidence 999999999999999999999988774311111110 11122233222 2455788888
Q ss_pred EEEEECCCcEEEEECCCCc
Q 000055 2527 FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2527 LaSGS~DGtIrIWDL~sg~ 2545 (2548)
|+-|+- =-|++.++.++.
T Consensus 291 lly~t~-~gikvin~~tn~ 308 (558)
T KOG0882|consen 291 LLYGTI-LGIKVINLDTNT 308 (558)
T ss_pred EEeecc-eeEEEEEeecCe
Confidence 444443 347888887763
No 282
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.00043 Score=88.94 Aligned_cols=149 Identities=13% Similarity=0.147 Sum_probs=115.2
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000055 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
+-..++-|...|.|.+|+...|+....+. ...|.+.|.++.++.+-..|.+++.|+.+..|+........+
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~s--------t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~- 139 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLS--------TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI- 139 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEe--------cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee-
Confidence 34467779999999999999998877763 356889999999999999999999999999999987653322
Q ss_pred cCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCE
Q 000055 2310 PMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPL 2387 (2548)
Q Consensus 2310 p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~l 2387 (2548)
+......+. +++|||..+++|+ +.|++||+.+ .+.+..|.||.+.|+++.|.-. + .+-.|.+
T Consensus 140 -------~~~~~~~~~sl~is~D~~~l~~as-----~~ik~~~~~~--kevv~~ftgh~s~v~t~~f~~~-~-~g~~G~~ 203 (541)
T KOG4547|consen 140 -------WKEQKPLVSSLCISPDGKILLTAS-----RQIKVLDIET--KEVVITFTGHGSPVRTLSFTTL-I-DGIIGKY 203 (541)
T ss_pred -------eccCCCccceEEEcCCCCEEEecc-----ceEEEEEccC--ceEEEEecCCCcceEEEEEEEe-c-cccccce
Confidence 333333332 5899999999975 8999999987 7889999999999999999765 1 1223444
Q ss_pred EE-EEeCCCcEEEEeCC
Q 000055 2388 IV-TGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2388 LV-SGS~DGtVrLWDLR 2403 (2548)
+. +...+..+.+|=++
T Consensus 204 vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 204 VLSSAAAERGITVWVVE 220 (541)
T ss_pred eeeccccccceeEEEEE
Confidence 44 44566777888754
No 283
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.65 E-value=0.00057 Score=90.54 Aligned_cols=189 Identities=14% Similarity=0.220 Sum_probs=136.8
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000055 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
++..++.|+-...+..+|+.+++..+.... ..+.|+-|+- +++.+.+|...|+|.+-|.++-+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v----------~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~----- 208 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV----------SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE----- 208 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec----------cCCceEEEEe--cCcEEEeecccceEEeecCCcCc-----
Confidence 456678888888888999998877666432 1134666665 48899999999999999988654
Q ss_pred cCccceeccCCcccEEEEcCCCCEEEEEeccC------CCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCC
Q 000055 2310 PMESCLCFSSHAMDVSYITSSGSVIAAAGHSS------NGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGS 2383 (2548)
Q Consensus 2310 p~~s~~t~~gH~~~V~afSpdGslLATgG~SS------~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs 2383 (2548)
...++..|.+.|..|+-.|++++++|+|. -|..|++||+++ .+.+.-+.-+.++ .-+.|+|.-
T Consensus 209 ---~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRm--mral~PI~~~~~P-~flrf~Psl----- 277 (1118)
T KOG1275|consen 209 ---TIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRM--MRALSPIQFPYGP-QFLRFHPSL----- 277 (1118)
T ss_pred ---eeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhh--hhccCCcccccCc-hhhhhcccc-----
Confidence 33568899999999999999999999753 356699999986 3444444444433 567888883
Q ss_pred CCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEe
Q 000055 2384 VSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTV 2463 (2548)
Q Consensus 2384 ~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafS 2463 (2548)
...+++++..|...+-|.-.+ +... ..+..+ ..-...+.++.++
T Consensus 278 -~t~~~V~S~sGq~q~vd~~~l--sNP~--------------------------------~~~~~v-~p~~s~i~~fDiS 321 (1118)
T KOG1275|consen 278 -TTRLAVTSQSGQFQFVDTATL--SNPP--------------------------------AGVKMV-NPNGSGISAFDIS 321 (1118)
T ss_pred -cceEEEEecccceeecccccc--CCCc--------------------------------cceeEE-ccCCCcceeEEec
Confidence 668999999999999883111 1110 000000 1123358899999
Q ss_pred CCCCEEEEEeCCCcEEEEE
Q 000055 2464 PNTSLFLTGSKDGDVKLWD 2482 (2548)
Q Consensus 2464 PdG~~LaSGS~DGtIrIWD 2482 (2548)
++|+.++-|..+|.|.+|.
T Consensus 322 sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 322 SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCceEEEecccCcEeeec
Confidence 9999999999999999998
No 284
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.65 E-value=0.033 Score=78.92 Aligned_cols=221 Identities=15% Similarity=0.099 Sum_probs=134.4
Q ss_pred EEEEEEcCCCCEEEEEEC---C---CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC---C
Q 000055 2222 TRAFSSHPLRPFFLVGSS---N---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---D 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~---D---GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~---D 2292 (2548)
...++|-.||.|+|+.+- . ..+|||+-+ |....+-+.. .+--.+++|-|.|+++|+... .
T Consensus 212 ~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v----------~gLe~~l~WrPsG~lIA~~q~~~~~ 280 (928)
T PF04762_consen 212 RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV----------DGLEGALSWRPSGNLIASSQRLPDR 280 (928)
T ss_pred ceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC----------CCccCCccCCCCCCEEEEEEEcCCC
Confidence 378899999999997653 3 579999965 5433332111 133457899999999998865 3
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc-CCCe
Q 000055 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH-EGGA 2369 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH-s~~V 2369 (2548)
..|.+|.-+.-++..+. ..+......|. .|++|+.++|..- ...|++|-...-..-..+.+... ...+
T Consensus 281 ~~VvFfErNGLrhgeF~-----l~~~~~~~~v~~l~Wn~ds~iLAv~~----~~~vqLWt~~NYHWYLKqei~~~~~~~~ 351 (928)
T PF04762_consen 281 HDVVFFERNGLRHGEFT-----LRFDPEEEKVIELAWNSDSEILAVWL----EDRVQLWTRSNYHWYLKQEIRFSSSESV 351 (928)
T ss_pred cEEEEEecCCcEeeeEe-----cCCCCCCceeeEEEECCCCCEEEEEe----cCCceEEEeeCCEEEEEEEEEccCCCCC
Confidence 46777776543322211 01122333443 5999999999974 33499999865322334444432 3345
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCC-CccCCCC-CceEE
Q 000055 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGS-GSKPGDQ-NGMLW 2447 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk-~v~s~D~-sv~Iw 2447 (2548)
..+.|+|.+ ...|.....+|.+..+++.. ..... -..+|+.. .++.-|| ++.+-
T Consensus 352 ~~~~Wdpe~------p~~L~v~t~~g~~~~~~~~~-------~v~~s-----------~~~~~~D~g~vaVIDG~~lllT 407 (928)
T PF04762_consen 352 NFVKWDPEK------PLRLHVLTSNGQYEIYDFAW-------DVSRS-----------PGSSPNDNGTVAVIDGNKLLLT 407 (928)
T ss_pred CceEECCCC------CCEEEEEecCCcEEEEEEEE-------EEEec-----------CCCCccCceEEEEEeCCeEEEe
Confidence 569999985 66788888888888877532 00000 00011111 1222222 22221
Q ss_pred Ecc------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000055 2448 YIP------------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2448 di~------------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
... -.-...|.+++|++++..+++-..||.|.+|.....
T Consensus 408 pf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 408 PFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred cccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 110 123578999999999988999999999999986543
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.57 E-value=0.00068 Score=80.85 Aligned_cols=222 Identities=18% Similarity=0.235 Sum_probs=126.7
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-ccccccCccceeccCCc---------------ccEEEEcCCCC-E
Q 000055 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGG-RSNVRPMESCLCFSSHA---------------MDVSYITSSGS-V 2333 (2548)
Q Consensus 2271 ~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk-~i~i~p~~s~~t~~gH~---------------~~V~afSpdGs-l 2333 (2548)
.+.|++|.|...|.++++|...|.|.++.-+... +.. .-...+++|. ..|.++.+.|+ .
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~cey----kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEY----KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccch----hhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 3789999999999999999999999999876432 111 0111244443 23344555443 3
Q ss_pred EEEEeccCCCCeEEEEECCCCCCCcce----------------------------------------ee-eccCCCeEEE
Q 000055 2334 IAAAGHSSNGINVVVWDTLAPPTSSRA----------------------------------------SI-TCHEGGARSI 2372 (2548)
Q Consensus 2334 LATgG~SS~DGtVrIWDl~t~~~k~v~----------------------------------------sl-~gHs~~VtSL 2372 (2548)
++..+ .|++|++|.+.....+.+. .. ..|.--++++
T Consensus 102 FLlst---NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 102 FLLST---NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred EEEec---CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 33333 8999999998643111100 00 1344455666
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc-
Q 000055 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK- 2451 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~- 2451 (2548)
.++.+ ...+++ +.|=.|.+|++.. .|+.-.|.|+..
T Consensus 179 S~NsD-------~et~lS-aDdLrINLWnl~i-----------------------------------~D~sFnIVDiKP~ 215 (460)
T COG5170 179 SFNSD-------KETLLS-ADDLRINLWNLEI-----------------------------------IDGSFNIVDIKPH 215 (460)
T ss_pred eecCc-------hheeee-ccceeeeeccccc-----------------------------------cCCceEEEeccCc
Confidence 66655 233333 3466677777431 111222333311
Q ss_pred ---CCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-
Q 000055 2452 ---AHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG- 2526 (2548)
Q Consensus 2452 ---gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG- 2526 (2548)
.-..-|++..|+|.. ..+.-.+..|.|++-|++...+...-....+. +.=+....+..+.+ +.|.++.|+++|
T Consensus 216 nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~eiv-sSISD~kFs~ngr 293 (460)
T COG5170 216 NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFEEIV-SSISDFKFSDNGR 293 (460)
T ss_pred cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh-ccCcccchhHHHHh-hhhcceEEcCCCc
Confidence 123467888899954 56667778999999999854432111000000 00000011222333 557899999999
Q ss_pred EEEEECCCcEEEEECCCC
Q 000055 2527 FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2527 LaSGS~DGtIrIWDL~sg 2544 (2548)
++.+-+--+|++||+...
T Consensus 294 yIlsRdyltvkiwDvnm~ 311 (460)
T COG5170 294 YILSRDYLTVKIWDVNMA 311 (460)
T ss_pred EEEEeccceEEEEecccc
Confidence 555556689999998643
No 286
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.54 E-value=0.031 Score=69.31 Aligned_cols=247 Identities=11% Similarity=0.150 Sum_probs=148.8
Q ss_pred EEEEEcCCCCEEEEEEC---CCeEEEEEcCC--CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-CcEE
Q 000055 2223 RAFSSHPLRPFFLVGSS---NTHIYLWEFGK--DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-GTVC 2296 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~---DGsVrLWDl~t--g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-GtVr 2296 (2548)
.=++++|++++|.++.. +|.|.-|.++. |+.. .+.... ..+ ..-..++++++|++++++... |.|.
T Consensus 43 tyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-~ln~~~-----~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 43 TYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-FLNRQT-----LPG--SPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred ceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-Eeeccc-----cCC--CCCeEEEECCCCCEEEEEEccCceEE
Confidence 56778899988887644 57788888875 4432 221111 111 223889999999999999765 7999
Q ss_pred EEEcCCCcccccccCccceecc---CCcc---c-EE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-eeeccC
Q 000055 2297 TWQLEVGGRSNVRPMESCLCFS---SHAM---D-VS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHE 2366 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~---gH~~---~-V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-sl~gHs 2366 (2548)
++-++....+. +........ .|.. . +. -+.|+++++++..- .--.|.+|++..+...... ....-.
T Consensus 115 v~p~~~dG~l~--~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL--G~Dri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 115 VYPLQADGSLQ--PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL--GTDRIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred EEEcccCCccc--cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--CCceEEEEEcccCccccccccccCCC
Confidence 99986533221 000000011 1111 0 22 28899999999852 3446899998753222221 111345
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEE-EeCCCcEEEEeCCccccC--ceeeeec--CCCCCCCccccccccCCCCCCccCCC
Q 000055 2367 GGARSISVFDNDLGSGSVSPLIVT-GGKGGDVGIHDFRYIATG--KTKKHKH--SDRGGSSINTCAHADAQTGSGSKPGD 2441 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVS-GS~DGtVrLWDLR~l~TG--k~l~tl~--~~~~~s~~~~~~vafSpdGk~v~s~D 2441 (2548)
.+.+.|.|+|+ +++... +--+++|-+|..... .+ +.++.+. ...-........+.+++||+++...+
T Consensus 191 ~GPRHi~FHpn-------~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 191 AGPRHIVFHPN-------GKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred CCcceEEEcCC-------CcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence 67899999999 565444 456899999996521 22 2233321 11223344456678899999844443
Q ss_pred C---CceEEEccc------------CCCCCEEEEEEeCCCCEEEEEeCCC-cEEEEECC--CCcEE
Q 000055 2442 Q---NGMLWYIPK------------AHLGSVTRISTVPNTSLFLTGSKDG-DVKLWDAK--AAQLV 2489 (2548)
Q Consensus 2442 ~---sv~Iwdi~~------------gH~~~VtsLafSPdG~~LaSGS~DG-tIrIWDl~--Tgell 2489 (2548)
+ .+.++.+.. -+...-+...++|+|++|++++.|+ .|.+|... +|++-
T Consensus 263 Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 263 RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 3 344554322 2333356788999999999998855 68888664 56554
No 287
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.014 Score=74.56 Aligned_cols=275 Identities=9% Similarity=0.133 Sum_probs=147.9
Q ss_pred EEEEEEcCCCCEEEEEE-----------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000055 2222 TRAFSSHPLRPFFLVGS-----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS-----------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
+.-+.|||..+||+|-+ ....++|||+.+|...+.|....+. ...-.-.+||.|++++|--.
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~-------~~~WP~frWS~DdKy~Arm~ 324 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP-------YLKWPIFRWSHDDKYFARMT 324 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC-------ccccceEEeccCCceeEEec
Confidence 47888999999999843 2257999999999998888654321 12223468999999998766
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCC--CeEEEEECCCCCCCcceeeeccC
Q 000055 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNG--INVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~D--GtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
. .+|.|++...-.....++ + ....|. .|+|.+++||.-.-..++ ..+.+-.+- ..+.+++-.-|.
T Consensus 325 ~-~sisIyEtpsf~lld~Ks------l--ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evP--s~~~iRt~nlfn 393 (698)
T KOG2314|consen 325 G-NSISIYETPSFMLLDKKS------L--KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVP--SKREIRTKNLFN 393 (698)
T ss_pred c-ceEEEEecCceeeecccc------c--CCccccCcccCCCcceEEEEcccccCCcceEEEEecC--ccceeeecccee
Confidence 6 577888876432111111 1 111222 377877777764210011 123333332 122232222221
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEE----------EeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000055 2367 GGARSISVFDNDLGSGSVSPLIVT----------GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVS----------GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
-.=..+.|-.+ |.+|+. +|.-..+.|+.+|.-. -.+.. ..-....-..+|-|.|..
T Consensus 394 VsDckLhWQk~-------gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd--Ipve~-----velke~vi~FaWEP~gdk 459 (698)
T KOG2314|consen 394 VSDCKLHWQKS-------GDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD--IPVEV-----VELKESVIAFAWEPHGDK 459 (698)
T ss_pred eeccEEEeccC-------CcEEEEEEEeeccccccceEeeEEEEEeeccC--CCcee-----eecchheeeeeeccCCCe
Confidence 11111222222 444443 1222234555544200 00000 111122334567777765
Q ss_pred ---cc--CCCCCceEEEcc-cCC---------CCCEEEEEEeCCCCEEEEEe---CCCcEEEEECCCCcEEEEecccccc
Q 000055 2437 ---SK--PGDQNGMLWYIP-KAH---------LGSVTRISTVPNTSLFLTGS---KDGDVKLWDAKAAQLVYHWSKLHER 2498 (2548)
Q Consensus 2437 ---v~--s~D~sv~Iwdi~-~gH---------~~~VtsLafSPdG~~LaSGS---~DGtIrIWDl~Tgell~tL~~~Hs~ 2498 (2548)
+. ....++..|.+. ..| ....+.+.|+|.|++++.+. .-|.+.++|+.-..+..+- +.
T Consensus 460 F~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~---~~- 535 (698)
T KOG2314|consen 460 FAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA---SP- 535 (698)
T ss_pred EEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc---Cc-
Confidence 11 223345556543 111 23567899999999998874 4789999998743333211 11
Q ss_pred cccccCcccCCCCceeecEEEEEEcCCe--EEEEEC------CCcEEEEECCCCcc
Q 000055 2499 HTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG------DGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2499 hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~------DGtIrIWDL~sg~l 2546 (2548)
-| ...+.+.|+|.| ++|++. |.--++|++.+..+
T Consensus 536 ---------eh-----~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 536 ---------EH-----FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLL 577 (698)
T ss_pred ---------cc-----cccccceECCCCCEEEEeeehhhhccccceEEEEeecHHH
Confidence 12 124567999999 666654 66678888876543
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.44 E-value=0.026 Score=71.05 Aligned_cols=165 Identities=12% Similarity=0.063 Sum_probs=113.0
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC-cEEEEEcCCCccccc
Q 000055 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-TVCTWQLEVGGRSNV 2308 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG-tVrVWDl~tgk~i~i 2308 (2548)
+|.+++..+. |.+.|.+...+-.+.. +|.+.|.-..+..+++.++.|..|| .+-++|.++++...
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv------------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr- 396 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV------------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR- 396 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc------------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-
Confidence 5777777665 5666666554443332 2347788888888888999999999 99999999885322
Q ss_pred ccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCC
Q 000055 2309 RPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSP 2386 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~ 2386 (2548)
+.+.-+.|.+ .+++|+.++++. +...+-+.|+.+ ++....-+...+-|+.+.|+|+ +.
T Consensus 397 --------~e~~lg~I~av~vs~dGK~~vvaN---dr~el~vididn--gnv~~idkS~~~lItdf~~~~n-------sr 456 (668)
T COG4946 397 --------IEKDLGNIEAVKVSPDGKKVVVAN---DRFELWVIDIDN--GNVRLIDKSEYGLITDFDWHPN-------SR 456 (668)
T ss_pred --------eeCCccceEEEEEcCCCcEEEEEc---CceEEEEEEecC--CCeeEecccccceeEEEEEcCC-------ce
Confidence 3333344543 799999999874 566777788876 4444444456788999999999 78
Q ss_pred EEEEEeCCC----cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000055 2387 LIVTGGKGG----DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2387 lLVSGS~DG----tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
+++-+--+| .|+++| +..++..... .+. ..--.-+|.|||++
T Consensus 457 ~iAYafP~gy~tq~Iklyd---m~~~Kiy~vT-T~t----a~DfsPaFD~d~ry 502 (668)
T COG4946 457 WIAYAFPEGYYTQSIKLYD---MDGGKIYDVT-TPT----AYDFSPAFDPDGRY 502 (668)
T ss_pred eEEEecCcceeeeeEEEEe---cCCCeEEEec-CCc----ccccCcccCCCCcE
Confidence 888877665 689999 5556655443 111 11123467788886
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.40 E-value=0.00047 Score=89.20 Aligned_cols=201 Identities=14% Similarity=0.186 Sum_probs=128.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceec-cCCcccEEEEcCCC--C-EEEEEeccCCCCeEE
Q 000055 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCF-SSHAMDVSYITSSG--S-VIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~-~gH~~~V~afSpdG--s-lLATgG~SS~DGtVr 2347 (2548)
+.+.++..+|.|+-++.++.-|.. +-|+...- .|..-..-. ....+++ .|++.. . .+++. ....-.
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~----~ppr~l~h~tpw~vad~-qws~h~a~~~wiVst----s~qkai 94 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLY-IIDLDDPF----TPPRWLHHITPWQVADV-QWSPHPAKPYWIVST----SNQKAI 94 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeE-EEeccCCC----CCceeeeccCcchhcce-ecccCCCCceeEEec----Ccchhh
Confidence 667888999999999999887755 45665331 111100000 1111122 144332 2 34443 345566
Q ss_pred EEECCCCCCCcc-eeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000055 2348 VWDTLAPPTSSR-ASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2348 IWDl~t~~~k~v-~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
+|++..+..+.+ ..+.+|+.+|+.+.|+|.+ ...+++++.|-.|..||+|... ..+
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~------pdVlatcsvdt~vh~wd~rSp~--~p~--------------- 151 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQH------PDVLATCSVDTYVHAWDMRSPH--RPF--------------- 151 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCC------CcceeeccccccceeeeccCCC--cce---------------
Confidence 898876444443 4566999999999999986 7799999999999999976311 111
Q ss_pred ccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-EEEEecccccccccccCc
Q 000055 2427 AHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ-LVYHWSKLHERHTFLQPS 2505 (2548)
Q Consensus 2427 ~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge-ll~tL~~~Hs~hsfl~~t 2505 (2548)
+.| ..-......|+|+-....+.+.+....|++||.+.|. ++..+
T Consensus 152 ------------------ys~---~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~------------- 197 (1081)
T KOG0309|consen 152 ------------------YST---SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSL------------- 197 (1081)
T ss_pred ------------------eee---ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEe-------------
Confidence 111 1123345678888755555555677899999999765 44444
Q ss_pred ccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCC
Q 000055 2506 SRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2506 l~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
++|- +.|..++|...- +.+++.||+|++||.+..
T Consensus 198 -K~~v----s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 198 -KGHV----SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred -cccc----eeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 5554 344556776544 889999999999998753
No 290
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.39 E-value=0.017 Score=71.41 Aligned_cols=205 Identities=14% Similarity=0.109 Sum_probs=131.1
Q ss_pred CeEEEEEcc-CCCEEEEEeCCC-cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEec--cCCCCeEEE
Q 000055 2273 SISALQFDH-YGHRFASAALDG-TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGH--SSNGINVVV 2348 (2548)
Q Consensus 2273 ~VtsVaFSP-dG~~LaSGS~DG-tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~--SS~DGtVrI 2348 (2548)
....++.+| .+..++.+-.-| ...+||..+++...........-|.+|. .|++||+++++.-. .+..|.|-|
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg----~fs~dG~~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG----VFSPDGRLLYTTENDYETGRGVIGV 81 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE----EEcCCCCEEEEeccccCCCcEEEEE
Confidence 345677788 566667777766 4567999888755433333334455665 59999999998631 124678999
Q ss_pred EECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe------------------CCCcEEEEeCCccccCce
Q 000055 2349 WDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG------------------KGGDVGIHDFRYIATGKT 2410 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS------------------~DGtVrLWDLR~l~TGk~ 2410 (2548)
||... ..+.+..+..|.-+-..+.+.|+ ++.|+.+- .+-++.+.| ..+|+.
T Consensus 82 yd~~~-~~~ri~E~~s~GIGPHel~l~pD-------G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld---~~sG~l 150 (305)
T PF07433_consen 82 YDAAR-GYRRIGEFPSHGIGPHELLLMPD-------GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLD---ARSGAL 150 (305)
T ss_pred EECcC-CcEEEeEecCCCcChhhEEEcCC-------CCEEEEEcCCCccCcccCceecChhhcCCceEEEe---cCCCce
Confidence 99983 35667788877777788888988 54554432 122344444 456666
Q ss_pred eeeecCCCCCCCccccccccCCCCCCccCCCCCc---------eEEE---------c----ccCCCCCEEEEEEeCCCCE
Q 000055 2411 KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNG---------MLWY---------I----PKAHLGSVTRISTVPNTSL 2468 (2548)
Q Consensus 2411 l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv---------~Iwd---------i----~~gH~~~VtsLafSPdG~~ 2468 (2548)
+.....+.......+..+++.++|.........+ -+++ . ...-.+.|-+|++++++.+
T Consensus 151 l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ 230 (305)
T PF07433_consen 151 LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRL 230 (305)
T ss_pred eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence 6554333333444567778888877622221111 1111 1 1134578999999999987
Q ss_pred EEEEe-CCCcEEEEECCCCcEEEEe
Q 000055 2469 FLTGS-KDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2469 LaSGS-~DGtIrIWDl~Tgell~tL 2492 (2548)
++..| .-|.+.+||..+++.+...
T Consensus 231 ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 231 IAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred EEEECCCCCEEEEEECCCCCEeecc
Confidence 75554 5779999999999998755
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.38 E-value=0.00059 Score=80.34 Aligned_cols=73 Identities=22% Similarity=0.416 Sum_probs=57.4
Q ss_pred CEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEE
Q 000055 2456 SVTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCG 2531 (2548)
Q Consensus 2456 ~VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS 2531 (2548)
.|++++-+|. ...+++|+.||.+-+||.+.......+ +..|.. .++.+.|+|.. |++++
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~-------------l~ahk~----~i~eV~FHpk~p~~Lft~s 243 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL-------------LKAHKA----EIWEVHFHPKNPEHLFTCS 243 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH-------------HHHhhh----hhhheeccCCCchheeEec
Confidence 4889999995 467788889999999999977443333 567764 45666999977 99999
Q ss_pred CCCcEEEEECCCCc
Q 000055 2532 GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2532 ~DGtIrIWDL~sg~ 2545 (2548)
.||.+-.||-.+..
T Consensus 244 edGslw~wdas~~~ 257 (319)
T KOG4714|consen 244 EDGSLWHWDASTTF 257 (319)
T ss_pred CCCcEEEEcCCCce
Confidence 99999999987543
No 292
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.37 E-value=0.00045 Score=59.20 Aligned_cols=35 Identities=29% Similarity=0.649 Sum_probs=32.8
Q ss_pred EcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000055 2448 YIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWD 2482 (2548)
Q Consensus 2448 di~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWD 2482 (2548)
..+.+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 34589999999999999999999999999999998
No 293
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.011 Score=76.02 Aligned_cols=150 Identities=13% Similarity=0.218 Sum_probs=102.8
Q ss_pred EEEEEEcCCCCEEE---EEECC---------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE
Q 000055 2222 TRAFSSHPLRPFFL---VGSSN---------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA 2289 (2548)
Q Consensus 2222 V~~VsfSPdG~~LA---SGS~D---------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG 2289 (2548)
-..+.|++-|.-|+ +..-| .++++.+++.......+. ..++|.++.|+++|+.|+++
T Consensus 220 kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-----------k~GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 220 KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-----------KEGPVHDVTWSPSGREFAVV 288 (566)
T ss_pred eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-----------CCCCceEEEECCCCCEEEEE
Confidence 36778887776332 23223 357777776333333321 13899999999999887765
Q ss_pred --eCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC
Q 000055 2290 --ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367 (2548)
Q Consensus 2290 --S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~ 2367 (2548)
-.=..+.++|++..-. ..+......-..|+|.|++++.+|.+.-.|.+-+||+.. .+.+..+.+ .
T Consensus 289 yGfMPAkvtifnlr~~~v---------~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a--~ 355 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLRGKPV---------FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKA--A 355 (566)
T ss_pred EecccceEEEEcCCCCEe---------EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc--hhhcccccc--C
Confidence 4456889999874311 112222222335999999999999877789999999975 566766654 3
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeC------CCcEEEEeC
Q 000055 2368 GARSISVFDNDLGSGSVSPLIVTGGK------GGDVGIHDF 2402 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~------DGtVrLWDL 2402 (2548)
..+-+.|+|+ |.+++|+.. |+.++||+.
T Consensus 356 ~tt~~eW~Pd-------Ge~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 356 NTTVFEWSPD-------GEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred CceEEEEcCC-------CcEEEEEeccccEEecCCeEEEEe
Confidence 4567899999 788888763 789999995
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.25 E-value=0.036 Score=72.47 Aligned_cols=159 Identities=13% Similarity=0.150 Sum_probs=90.2
Q ss_pred CCeEEEEEccCCCE-EEEEeCC---CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEE
Q 000055 2272 ASISALQFDHYGHR-FASAALD---GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~-LaSGS~D---GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVr 2347 (2548)
+.+..-.|+|||+. ++..+.+ ..|.++|+.+++...+. ...+. .....|+|||+.++.......+..|.
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt------~~~g~-~~~~~~SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA------SSQGM-LVVSDVSKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe------cCCCc-EEeeEECCCCCEEEEEEccCCCcEEE
Confidence 35778999999985 6654443 46888898877533221 11111 12235899998777543111345677
Q ss_pred EEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE-EEeCCC--cEEEEeCCccccCceeeeecCCCCCCCcc
Q 000055 2348 VWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV-TGGKGG--DVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV-SGS~DG--tVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
++|+.. +. ...+..+.+......|+|+ |+.|+ +....| .|.+.| +.+++..+..
T Consensus 261 ~~dl~~--g~-~~~LT~~~~~d~~p~~SPD-------G~~I~F~Sdr~g~~~Iy~~d---l~~g~~~rlt---------- 317 (419)
T PRK04043 261 LYDTNT--KT-LTQITNYPGIDVNGNFVED-------DKRIVFVSDRLGYPNIFMKK---LNSGSVEQVV---------- 317 (419)
T ss_pred EEECCC--Cc-EEEcccCCCccCccEECCC-------CCEEEEEECCCCCceEEEEE---CCCCCeEeCc----------
Confidence 778764 22 3334333433445679998 55444 443444 455555 3444432221
Q ss_pred ccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC---------CcEEEEECCCCcEE
Q 000055 2425 TCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD---------GDVKLWDAKAAQLV 2489 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D---------GtIrIWDl~Tgell 2489 (2548)
..+.. ...|+|+|+.++..+.. ..|.+.|+.+++..
T Consensus 318 -------------------------~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 318 -------------------------FHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred -------------------------cCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 01111 13789999888766543 36788888887653
No 295
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.20 E-value=0.0046 Score=79.96 Aligned_cols=222 Identities=12% Similarity=0.106 Sum_probs=135.1
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccc-ccc------CccceeccCCcccEE--EEcCCCCEEEEEeccCC
Q 000055 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN-VRP------MESCLCFSSHAMDVS--YITSSGSVIAAAGHSSN 2342 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~-i~p------~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~ 2342 (2548)
....++.|+....+++.|+.||.+++-.+.+..... ..+ ....+++.||...|. .|+.+.+.+.+.. .
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD---t 91 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD---T 91 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC---C
Confidence 568899999999999999999999999887542111 111 122366889998876 4777777887765 7
Q ss_pred CCeEEEEECCCCCCCcceee--eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC
Q 000055 2343 GINVVVWDTLAPPTSSRASI--TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG 2420 (2548)
Q Consensus 2343 DGtVrIWDl~t~~~k~v~sl--~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~ 2420 (2548)
+|.|.+|-+-. +.-...+ ....+.|.+++|+.+ |+.++....||.|.+=.+. |..+-... -
T Consensus 92 ~GlIiVWmlyk--gsW~EEMiNnRnKSvV~SmsWn~d-------G~kIcIvYeDGavIVGsvd----GNRIwgKe----L 154 (1189)
T KOG2041|consen 92 SGLIIVWMLYK--GSWCEEMINNRNKSVVVSMSWNLD-------GTKICIVYEDGAVIVGSVD----GNRIWGKE----L 154 (1189)
T ss_pred CceEEEEeeec--ccHHHHHhhCcCccEEEEEEEcCC-------CcEEEEEEccCCEEEEeec----cceecchh----c
Confidence 89999999865 3322222 234567889999888 6777777777777554421 11110000 0
Q ss_pred CCccccccccCCCCCC--ccCCCCCceEEEcc-------------------cCCCCCEEEEEEe--------CCCCEEEE
Q 000055 2421 SSINTCAHADAQTGSG--SKPGDQNGMLWYIP-------------------KAHLGSVTRISTV--------PNTSLFLT 2471 (2548)
Q Consensus 2421 s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~-------------------~gH~~~VtsLafS--------PdG~~LaS 2471 (2548)
.......+.+++|.+. .+-.++...+++.. ......|-.+.|. |+...|+.
T Consensus 155 kg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav 234 (1189)
T KOG2041|consen 155 KGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV 234 (1189)
T ss_pred chheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE
Confidence 0111235667777665 44455666666521 1111124444443 46678888
Q ss_pred EeCCCcEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC
Q 000055 2472 GSKDGDVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD 2533 (2548)
Q Consensus 2472 GS~DGtIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D 2533 (2548)
+-..|.+.|-.-.+ .+++- +. .| --+.+..|+++| |+.||.|
T Consensus 235 cy~nGr~QiMR~eND~~Pvv-~d-------------tg------m~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 235 CYANGRMQIMRSENDPEPVV-VD-------------TG------MKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred EEcCceehhhhhcCCCCCeE-Ee-------------cc------cEeecceecCCCcEEEEccCc
Confidence 88888887764332 22221 10 01 124566899999 7777765
No 296
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.00025 Score=92.69 Aligned_cols=192 Identities=16% Similarity=0.235 Sum_probs=135.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEE--cCCCCEEEEEeccCCCCeEE
Q 000055 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYI--TSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~af--SpdGslLATgG~SS~DGtVr 2347 (2548)
|...-+|++|+-+.+.|+.|+..|.|+++++.+|.... ..++|...|+-+ +.+|....+...+ ..--..
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~--------s~ncH~SavT~vePs~dgs~~Ltsss~-S~Plsa 1170 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE--------SVNCHQSAVTLVEPSVDGSTQLTSSSS-SSPLSA 1170 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccc--------cccccccccccccccCCcceeeeeccc-cCchHH
Confidence 44789999999999999999999999999999986432 267888888764 4478877775421 233578
Q ss_pred EEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccc
Q 000055 2348 VWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCA 2427 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~ 2427 (2548)
+|++.. .+..++++. .-.++.|+.. ...-+.|.....+.+|| .+++..+.+..++..........
T Consensus 1171 LW~~~s-~~~~~Hsf~----ed~~vkFsn~-------~q~r~~gt~~d~a~~YD---vqT~~~l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1171 LWDASS-TGGPRHSFD----EDKAVKFSNS-------LQFRALGTEADDALLYD---VQTCSPLQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred Hhcccc-ccCcccccc----ccceeehhhh-------HHHHHhcccccceEEEe---cccCcHHHHhcCcchhhhhhccc
Confidence 999875 355666664 3456777765 33445555567789999 77787777754555555555677
Q ss_pred cccCCCCCCccCCCCCceEEEcccC---CC----CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000055 2428 HADAQTGSGSKPGDQNGMLWYIPKA---HL----GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2428 vafSpdGk~v~s~D~sv~Iwdi~~g---H~----~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
+.|+|+..++- +++.+||+... |. ..-..-.|+|+|.-++.-++ |||++|.+++++.+
T Consensus 1236 a~FsP~D~LIl---ndGvLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1236 AHFSPCDTLIL---NDGVLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVP 1300 (1516)
T ss_pred cccCCCcceEe---eCceeeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhHHHHHHhcCc
Confidence 88999887743 35678886432 11 01112359999998887764 89999998887765
No 297
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.20 E-value=0.047 Score=68.86 Aligned_cols=196 Identities=17% Similarity=0.172 Sum_probs=126.6
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEE---EE-Ecc-CCCEEEEEeCCCcEEEEEcCCC
Q 000055 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISA---LQ-FDH-YGHRFASAALDGTVCTWQLEVG 2303 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vts---Va-FSP-dG~~LaSGS~DGtVrVWDl~tg 2303 (2548)
.||+.++- +.-|.|.+||.++......--.++-.. .......+.- +. |++ +|++++..+. |...+.+...+
T Consensus 276 sDGkrIvF-q~~GdIylydP~td~lekldI~lpl~r--k~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 276 SDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDR--KKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CCCcEEEE-ecCCcEEEeCCCcCcceeeecCCcccc--ccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 67776654 345679999988765332211111110 0000111111 22 443 6888888776 55656555444
Q ss_pred cccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCC-eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000055 2304 GRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGI-NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DG-tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
-.+ --+|...|.. +..+++-++.|. .|| .+-|+|.+. ..+..+...-+.|.++..+++
T Consensus 352 ~~i----------qv~~~~~VrY~r~~~~~e~~vigt---~dgD~l~iyd~~~---~e~kr~e~~lg~I~av~vs~d--- 412 (668)
T COG4946 352 YSI----------QVGKKGGVRYRRIQVDPEGDVIGT---NDGDKLGIYDKDG---GEVKRIEKDLGNIEAVKVSPD--- 412 (668)
T ss_pred eeE----------EcCCCCceEEEEEccCCcceEEec---cCCceEEEEecCC---ceEEEeeCCccceEEEEEcCC---
Confidence 222 1245555653 555666666664 677 899999975 345566677789999999998
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000055 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
|+.++.+.....+-+.| +.+|.....- +...+-|+..
T Consensus 413 ----GK~~vvaNdr~el~vid---idngnv~~id------------------------------------kS~~~lItdf 449 (668)
T COG4946 413 ----GKKVVVANDRFELWVID---IDNGNVRLID------------------------------------KSEYGLITDF 449 (668)
T ss_pred ----CcEEEEEcCceEEEEEE---ecCCCeeEec------------------------------------ccccceeEEE
Confidence 78899998888888888 4455443221 4456789999
Q ss_pred EEeCCCCEEEEEeCCC----cEEEEECCCCcEEE
Q 000055 2461 STVPNTSLFLTGSKDG----DVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DG----tIrIWDl~Tgell~ 2490 (2548)
+|||+++++|-+--+| .|+++|+.+++...
T Consensus 450 ~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 450 DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred EEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 9999999999886666 68999999887665
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.18 E-value=0.0011 Score=80.62 Aligned_cols=151 Identities=13% Similarity=0.086 Sum_probs=103.0
Q ss_pred EEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccc
Q 000055 2235 LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESC 2314 (2548)
Q Consensus 2235 ASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~ 2314 (2548)
++.+.+-.|-+-|+.+|....- ...+.|.++.|...++.+..|..+|.|...|++.......- ..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf------------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~---~a 292 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSF------------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW---CA 292 (425)
T ss_pred ecccccceeEEEEeeccccccc------------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc---ce
Confidence 4455566788888887643211 12377999999999999999999999999999865221111 11
Q ss_pred eeccCCcccEEE---EcCCCCEEEEEeccCCCCeEEEEECCCCCCCc---ceeeeccCCCeEEEEEccCCCCCCCCCCEE
Q 000055 2315 LCFSSHAMDVSY---ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS---RASITCHEGGARSISVFDNDLGSGSVSPLI 2388 (2548)
Q Consensus 2315 ~t~~gH~~~V~a---fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~---v~sl~gHs~~VtSLafsP~dlg~gs~g~lL 2388 (2548)
+ .--|...|++ +..+++.+++.+ .+|+|++||.+. .++ +..+.||...-.-+-++-+. ....+
T Consensus 293 ~-rlyh~Ssvtslq~Lq~s~q~LmaS~---M~gkikLyD~R~--~K~~~~V~qYeGHvN~~a~l~~~v~~-----eeg~I 361 (425)
T KOG2695|consen 293 Q-RLYHDSSVTSLQILQFSQQKLMASD---MTGKIKLYDLRA--TKCKKSVMQYEGHVNLSAYLPAHVKE-----EEGSI 361 (425)
T ss_pred E-EEEcCcchhhhhhhccccceEeecc---CcCceeEeeehh--hhcccceeeeeccccccccccccccc-----ccceE
Confidence 1 2246666665 333566666655 899999999986 344 77777876544443333221 24588
Q ss_pred EEEeCCCcEEEEeCCccccCceeeee
Q 000055 2389 VTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2389 VSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
+++|.|...|||. +..|..+.++
T Consensus 362 ~s~GdDcytRiWs---l~~ghLl~ti 384 (425)
T KOG2695|consen 362 FSVGDDCYTRIWS---LDSGHLLCTI 384 (425)
T ss_pred EEccCeeEEEEEe---cccCceeecc
Confidence 8899999999999 5667777665
No 299
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.18 E-value=0.069 Score=68.41 Aligned_cols=246 Identities=12% Similarity=0.128 Sum_probs=144.6
Q ss_pred EEEEEEcCCCCEEEEEECC---------------CeEEEEEcCCCceeEEEeccCCCCC---------------------
Q 000055 2222 TRAFSSHPLRPFFLVGSSN---------------THIYLWEFGKDKATATYGVLPAANV--------------------- 2265 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D---------------GsVrLWDl~tg~~l~t~~~l~ghs~--------------------- 2265 (2548)
|.-+.|+|.++||.+-+.. +.+.+||..+|..+..+........
T Consensus 74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~s 153 (561)
T COG5354 74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSS 153 (561)
T ss_pred ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCe
Confidence 5888899999999985433 3489999998887666544221100
Q ss_pred -----------CCCCC---CCCeEEEEEccC--CCEEEE-----EeCCCcEEEEEcCCCcccccccCccceeccCCcccE
Q 000055 2266 -----------PPPYA---LASISALQFDHY--GHRFAS-----AALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDV 2324 (2548)
Q Consensus 2266 -----------~~~~H---~~~VtsVaFSPd--G~~LaS-----GS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V 2324 (2548)
..+.| ...|+...|+|. +..|+. .+.++++++|.+..+..+... ++-. ...|
T Consensus 154 l~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk------~lfk-~~~~ 226 (561)
T COG5354 154 LYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK------NLFK-VSGV 226 (561)
T ss_pred EEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee------eeEe-eccc
Confidence 00111 134666667764 233332 345667777777644322211 1111 1112
Q ss_pred E-EEcCCCCEEEEEec---cC-----CCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC
Q 000055 2325 S-YITSSGSVIAAAGH---SS-----NGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG 2395 (2548)
Q Consensus 2325 ~-afSpdGslLATgG~---SS-----~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG 2395 (2548)
. .|.+.|++++.--. .| ...+++|+++.. ..+.....-.++|..+.|.|.. ..=-+++|-.+-
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e---~~i~V~~~~~~pVhdf~W~p~S-----~~F~vi~g~~pa 298 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE---RSIPVEKDLKDPVHDFTWEPLS-----SRFAVISGYMPA 298 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecc---cccceeccccccceeeeecccC-----CceeEEeccccc
Confidence 1 25666665443210 00 135688888863 3333333557899999999983 112345567899
Q ss_pred cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC
Q 000055 2396 DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD 2475 (2548)
Q Consensus 2396 tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D 2475 (2548)
.+.++|+|. .....+ .++.=..+.|+|.+++++.++-|
T Consensus 299 ~~s~~~lr~----Nl~~~~--------------------------------------Pe~~rNT~~fsp~~r~il~agF~ 336 (561)
T COG5354 299 SVSVFDLRG----NLRFYF--------------------------------------PEQKRNTIFFSPHERYILFAGFD 336 (561)
T ss_pred ceeeccccc----ceEEec--------------------------------------CCcccccccccCcccEEEEecCC
Confidence 999999762 322111 22333467799999999998775
Q ss_pred ---CcEEEEECCCCcEEE-EecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE--E----CCCcEEEEECCC
Q 000055 2476 ---GDVKLWDAKAAQLVY-HWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC--G----GDGSVKLIQLED 2543 (2548)
Q Consensus 2476 ---GtIrIWDl~Tgell~-tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG--S----~DGtIrIWDL~s 2543 (2548)
|.|-+||...+..+. .+ .|-+ ..-+.|+|+| +.+. | .|..|++||+.+
T Consensus 337 nl~gni~i~~~~~rf~~~~~~--------------~~~n------~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 337 NLQGNIEIFDPAGRFKVAGAF--------------NGLN------TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred ccccceEEeccCCceEEEEEe--------------ecCC------ceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 689999988765554 34 2222 2334899999 3333 2 378999999865
Q ss_pred C
Q 000055 2544 Y 2544 (2548)
Q Consensus 2544 g 2544 (2548)
.
T Consensus 397 ~ 397 (561)
T COG5354 397 A 397 (561)
T ss_pred c
Confidence 4
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.18 E-value=0.079 Score=62.77 Aligned_cols=226 Identities=15% Similarity=0.132 Sum_probs=124.6
Q ss_pred CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccC
Q 000055 2240 NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS 2319 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~g 2319 (2548)
+|+|..||..+|+.+-.+..-+. .....+. ..+++..+++++.++.|..||..+|+..-... ..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~--------~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~------~~~ 66 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG--------IGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD------LPG 66 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS--------CSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE------CSS
T ss_pred CCEEEEEECCCCCEEEEEECCCC--------CCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee------ccc
Confidence 68899999999998888753110 0222211 22357778888999999999999886432211 111
Q ss_pred CcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccC---CCeEEEEEccCCCCCCCCCCEEEEEeCCC
Q 000055 2320 HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHE---GGARSISVFDNDLGSGSVSPLIVTGGKGG 2395 (2548)
Q Consensus 2320 H~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs---~~VtSLafsP~dlg~gs~g~lLVSGS~DG 2395 (2548)
...... .. ++..++++. .++.+..+|..+ ++.+... .... ........... +..++.+..+|
T Consensus 67 ~~~~~~-~~-~~~~v~v~~---~~~~l~~~d~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g 132 (238)
T PF13360_consen 67 PISGAP-VV-DGGRVYVGT---SDGSLYALDAKT--GKVLWSIYLTSSPPAGVRSSSSPAVD-------GDRLYVGTSSG 132 (238)
T ss_dssp CGGSGE-EE-ETTEEEEEE---TTSEEEEEETTT--SCEEEEEEE-SSCTCSTB--SEEEEE-------TTEEEEEETCS
T ss_pred ccccee-ee-ccccccccc---ceeeeEecccCC--cceeeeeccccccccccccccCceEe-------cCEEEEEeccC
Confidence 111111 11 334444443 577999999776 5555442 2211 11111111111 34888888899
Q ss_pred cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC
Q 000055 2396 DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD 2475 (2548)
Q Consensus 2396 tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D 2475 (2548)
.|..+| ..+|+.+-......... ...+. ....+..-....++ .++.++.+
T Consensus 133 ~l~~~d---~~tG~~~w~~~~~~~~~---------------------~~~~~-----~~~~~~~~~~~~~~-~v~~~~~~ 182 (238)
T PF13360_consen 133 KLVALD---PKTGKLLWKYPVGEPRG---------------------SSPIS-----SFSDINGSPVISDG-RVYVSSGD 182 (238)
T ss_dssp EEEEEE---TTTTEEEEEEESSTT-S---------------------S--EE-----EETTEEEEEECCTT-EEEEECCT
T ss_pred cEEEEe---cCCCcEEEEeecCCCCC---------------------Cccee-----eecccccceEEECC-EEEEEcCC
Confidence 999999 67788766652100000 00000 01112222222244 66777777
Q ss_pred Cc-EEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000055 2476 GD-VKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2476 Gt-IrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
|. +.+ |+.+++.+...+ . .+ +.. ....++ ++.++.|+.|..||+.+|..
T Consensus 183 g~~~~~-d~~tg~~~w~~~-~-----------~~--------~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 183 GRVVAV-DLATGEKLWSKP-I-----------SG--------IYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp SSEEEE-ETTTTEEEEEEC-S-----------S---------ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred CeEEEE-ECCCCCEEEEec-C-----------CC--------ccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 75 555 999999765331 0 11 111 122333 66677899999999999864
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.17 E-value=0.027 Score=74.21 Aligned_cols=258 Identities=14% Similarity=0.106 Sum_probs=147.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC------------CCEEEEEe
Q 000055 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY------------GHRFASAA 2290 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd------------G~~LaSGS 2290 (2548)
.++.|+|.| ++|-|+ ...|.+-|..+-+.+..+.. |...|+.|+|.|. .-.+|+++
T Consensus 19 ~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~----------h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD 86 (1062)
T KOG1912|consen 19 NAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIEL----------HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD 86 (1062)
T ss_pred cccccCccc-eEEEec-CceEEEEehhhhhhhhcccc----------CccceeEEEeccCCCchhccCccccceeEEecc
Confidence 567777877 445444 45688889877776666532 5588999999873 12578888
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcc---cEEE--EcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceeeec
Q 000055 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAM---DVSY--ITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASITC 2364 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~---~V~a--fSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g 2364 (2548)
..|.|.+||...+..... +..|.. ++++ ..++. .++++-. ...++.+|+..+ ++.+-....
T Consensus 87 ~~GrIil~d~~~~s~~~~--------l~~~~~~~qdl~W~~~rd~Srd~LlaIh---~ss~lvLwntdt--G~k~Wk~~y 153 (1062)
T KOG1912|consen 87 ISGRIILVDFVLASVINW--------LSHSNDSVQDLCWVPARDDSRDVLLAIH---GSSTLVLWNTDT--GEKFWKYDY 153 (1062)
T ss_pred ccCcEEEEEehhhhhhhh--------hcCCCcchhheeeeeccCcchheeEEec---CCcEEEEEEccC--Cceeecccc
Confidence 889999999987643221 233333 3343 23344 3333332 468999999887 555555544
Q ss_pred cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccc----cCceeeeecCCCCCCCccccccccCCCCCCccCC
Q 000055 2365 HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIA----TGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPG 2440 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~----TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~ 2440 (2548)
-.....|+.+.|-+ ...+..-+..|.|-+-+.-... .|+..+.. .+ ++. .....+..+.+
T Consensus 154 s~~iLs~f~~DPfd------~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~-sd--~Sd-------l~~lere~at~ 217 (1062)
T KOG1912|consen 154 SHEILSCFRVDPFD------SRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT-SD--HSD-------LAHLERETATG 217 (1062)
T ss_pred CCcceeeeeeCCCC------cceEEEEccCceEEEEeccCCCCCCCCceeEEEe-cC--ccc-------hhhhhhhhhcc
Confidence 45567779998886 6677777778888777742111 11111111 00 000 00000001110
Q ss_pred CCCceEEEcccCCC---CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000055 2441 DQNGMLWYIPKAHL---GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2441 D~sv~Iwdi~~gH~---~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
+... ...... -..-.++|+|.-+-++-...-..+.|+|++-..++.+.+-+ +|. +
T Consensus 218 ns~t----s~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie-----------r~~-------a 275 (1062)
T KOG1912|consen 218 NSTT----STPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE-----------RGG-------A 275 (1062)
T ss_pred cccc----CCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec-----------cCC-------c
Confidence 0000 000000 01224667886554444456678999999988888877422 121 1
Q ss_pred EEEEEcCCe----EEEEECCCcEEEEECCC
Q 000055 2518 TDIQVVSRG----FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2518 tsLafSPdG----LaSGS~DGtIrIWDL~s 2543 (2548)
.=+.+-|++ |.+.-.||.+.+|.-+.
T Consensus 276 kfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 276 KFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 112455555 88899999999997643
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.14 E-value=0.21 Score=60.24 Aligned_cols=207 Identities=12% Similarity=0.107 Sum_probs=123.1
Q ss_pred EEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000055 2224 AFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2224 ~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
+..|.+ ++.++++-...+.|..|+..++.... +.. .....+++...+..++.+..++. .++|..+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~------------~~~~G~~~~~~~g~l~v~~~~~~-~~~d~~~ 69 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL------------PGPNGMAFDRPDGRLYVADSGGI-AVVDPDT 69 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES------------SSEEEEEEECTTSEEEEEETTCE-EEEETTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec------------CCCceEEEEccCCEEEEEEcCce-EEEecCC
Confidence 567888 77777787788999999998876543 211 23778888833355666665554 4559887
Q ss_pred CcccccccCccceeccC-CcccEE--EEcCCCCEEEEEeccCC---C--CeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000055 2303 GGRSNVRPMESCLCFSS-HAMDVS--YITSSGSVIAAAGHSSN---G--INVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~g-H~~~V~--afSpdGslLATgG~SS~---D--GtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
++...+.. . .... ...... ++.++|++.++...... . |.|..++.. ++ +..+...-...+.++|
T Consensus 70 g~~~~~~~---~-~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~---~~-~~~~~~~~~~pNGi~~ 141 (246)
T PF08450_consen 70 GKVTVLAD---L-PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD---GK-VTVVADGLGFPNGIAF 141 (246)
T ss_dssp TEEEEEEE---E-ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT---SE-EEEEEEEESSEEEEEE
T ss_pred CcEEEEee---c-cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC---Ce-EEEEecCcccccceEE
Confidence 74322211 0 0011 111222 47899997777531100 0 456666664 22 2333334567789999
Q ss_pred ccCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000055 2375 FDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2375 sP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
+|+ ++ ++++-+..+.|..+|+.. .+..+... +++--...-
T Consensus 142 s~d-------g~~lyv~ds~~~~i~~~~~~~--~~~~~~~~------------------------------~~~~~~~~~ 182 (246)
T PF08450_consen 142 SPD-------GKTLYVADSFNGRIWRFDLDA--DGGELSNR------------------------------RVFIDFPGG 182 (246)
T ss_dssp ETT-------SSEEEEEETTTTEEEEEEEET--TTCCEEEE------------------------------EEEEE-SSS
T ss_pred CCc-------chheeecccccceeEEEeccc--cccceeee------------------------------eeEEEcCCC
Confidence 999 45 556777888899888531 11111110 111001112
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000055 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.+..-.++++.+|++.++.-..+.|.++|.+ |+.+..+
T Consensus 183 ~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 183 PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp SCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred CcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence 2357789999999999988889999999987 9988877
No 303
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.10 E-value=0.077 Score=69.45 Aligned_cols=138 Identities=12% Similarity=0.058 Sum_probs=80.5
Q ss_pred EEEEEEcCCCCE-EEEEEC---CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCC--Cc
Q 000055 2222 TRAFSSHPLRPF-FLVGSS---NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALD--GT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG~~-LASGS~---DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~D--Gt 2294 (2548)
...-.|+|+|+. ++..+. +..|.++|+.+++...... . .+.+....|+|||+.++.. +.+ ..
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~----------~g~~~~~~~SPDG~~la~~~~~~g~~~ 258 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-S----------QGMLVVSDVSKDGSKLLLTMAPKGQPD 258 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-C----------CCcEEeeEECCCCCEEEEEEccCCCcE
Confidence 467899999985 554333 4568999998886544331 1 1456678899999877644 334 46
Q ss_pred EEEEEcCCCcccccccCccceeccCCcc-cE-EEEcCCCCEEEEEeccCCCC--eEEEEECCCCCCCcceeeeccCCCeE
Q 000055 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAM-DV-SYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~-~V-~afSpdGslLATgG~SS~DG--tVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
|.++|+.++.... +..+.. .+ -.|+|||+.|+.... ..+ .|.+.|+.. ++..+ +..... .
T Consensus 259 Iy~~dl~~g~~~~---------LT~~~~~d~~p~~SPDG~~I~F~Sd--r~g~~~Iy~~dl~~--g~~~r-lt~~g~--~ 322 (419)
T PRK04043 259 IYLYDTNTKTLTQ---------ITNYPGIDVNGNFVEDDKRIVFVSD--RLGYPNIFMKKLNS--GSVEQ-VVFHGK--N 322 (419)
T ss_pred EEEEECCCCcEEE---------cccCCCccCccEECCCCCEEEEEEC--CCCCceEEEEECCC--CCeEe-CccCCC--c
Confidence 7777776664221 111111 12 259999998777641 233 577777764 33212 211111 1
Q ss_pred EEEEccCCCCCCCCCCEEEEEeC
Q 000055 2371 SISVFDNDLGSGSVSPLIVTGGK 2393 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~ 2393 (2548)
...|+|+ ++.++..+.
T Consensus 323 ~~~~SPD-------G~~Ia~~~~ 338 (419)
T PRK04043 323 NSSVSTY-------KNYIVYSSR 338 (419)
T ss_pred CceECCC-------CCEEEEEEc
Confidence 2478998 666665543
No 304
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.06 E-value=0.00097 Score=57.14 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=35.4
Q ss_pred CcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEe
Q 000055 2357 SSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHD 2401 (2548)
Q Consensus 2357 k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWD 2401 (2548)
+++..+.+|.+.|++++|+|+ +.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~-------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD-------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT-------SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc-------cccceeeCCCCEEEEEC
Confidence 467789999999999999999 78999999999999998
No 305
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.05 E-value=0.037 Score=66.05 Aligned_cols=190 Identities=12% Similarity=0.028 Sum_probs=117.4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE---Ec-CCCCEEEEEeccCCCCeEEEEECCCCCCCc
Q 000055 2283 GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY---IT-SSGSVIAAAGHSSNGINVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2283 G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a---fS-pdGslLATgG~SS~DGtVrIWDl~t~~~k~ 2358 (2548)
-.+|+.|+.-|...+|...+.+... +....|..+|.- .. .....+++ |.|.++++.++.....+.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~-------~~cd~snn~v~~~~r~cd~~~~~~i~----sndht~k~~~~~~~s~~~ 152 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHL-------YQCDVSNNDVTLVKRYCDLKFPLNIA----SNDHTGKTMVVSGDSNKF 152 (344)
T ss_pred ccEEEeccccceeeeecccCcccce-------eeecccccchhhhhhhcccccceeec----cCCcceeEEEEecCcccc
Confidence 4578999999999999988654211 112333343321 11 11223333 378999999887532222
Q ss_pred ceeeeccCC--CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000055 2359 RASITCHEG--GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2359 v~sl~gHs~--~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
. .|.. .+.++.++++ +.++++.+....|-.|.+.. .++-+.....
T Consensus 153 ~----~h~~~~~~ns~~~snd-------~~~~~~Vgds~~Vf~y~id~--~sey~~~~~~-------------------- 199 (344)
T KOG4532|consen 153 A----VHNQNLTQNSLHYSND-------PSWGSSVGDSRRVFRYAIDD--ESEYIENIYE-------------------- 199 (344)
T ss_pred e----eeccccceeeeEEcCC-------CceEEEecCCCcceEEEeCC--ccceeeeeEe--------------------
Confidence 1 2333 3788999998 78999999999999998642 2221111100
Q ss_pred ccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-EEEEecccccccccccCcccCCCCceee
Q 000055 2437 SKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ-LVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2437 v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge-ll~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
..-+..=.+..|+.....+|++..||++.|||++... +..+.. .+-..|.+.
T Consensus 200 --------------a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s----------strp~hnGa--- 252 (344)
T KOG4532|consen 200 --------------APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS----------STRPHHNGA--- 252 (344)
T ss_pred --------------cccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc----------ccCCCCCCc---
Confidence 1112233577899999999999999999999998643 333221 111235543
Q ss_pred cEEEEEEcCCe----EEEEECCCcEEEEECCCC
Q 000055 2516 GVTDIQVVSRG----FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2516 ~VtsLafSPdG----LaSGS~DGtIrIWDL~sg 2544 (2548)
+..+.|++.| |.-.-.-+.+.+-|++++
T Consensus 253 -~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 253 -FRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred -eEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 4566899877 444445678888888775
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.013 Score=77.85 Aligned_cols=194 Identities=17% Similarity=0.202 Sum_probs=127.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEEC
Q 000055 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl 2351 (2548)
+.++|++++ ++.|+-|..+|.|++.+....... ...|... ..+|.++++|+ .||+|.|-.+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~~----------~~~~s~~----~~~Gey~asCS---~DGkv~I~sl 100 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNPKT----------NFDHSSS----ILEGEYVASCS---DDGKVVIGSL 100 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcccc----------ccccccc----ccCCceEEEec---CCCcEEEeec
Confidence 567777776 788999999999999998643110 1122221 56899999984 9999999998
Q ss_pred CCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000055 2352 LAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2352 ~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
.++.......+ ..++.+|+++|+- .-..+..+++||.-| +.++.-+.+.....+
T Consensus 101 ~~~~~~~~~df---~rpiksial~Pd~--~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-------------------- 154 (846)
T KOG2066|consen 101 FTDDEITQYDF---KRPIKSIALHPDF--SRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-------------------- 154 (846)
T ss_pred cCCccceeEec---CCcceeEEeccch--hhhhhhheeecCcce-EEEehhhhhcCccce--------------------
Confidence 76433333333 4589999999981 001256899999999 877773322111111
Q ss_pred CCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCC
Q 000055 2432 QTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGG 2511 (2548)
Q Consensus 2432 pdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~ 2511 (2548)
+...-.|+|.++.| .|.++|-++.+| |+|||+.+++.+..++..+.... ...++
T Consensus 155 -----------------~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R--~e~fp---- 208 (846)
T KOG2066|consen 155 -----------------VLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVR--PELFP---- 208 (846)
T ss_pred -----------------eeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCC--cccCC----
Confidence 11345789999999 688999988776 79999999999987754441110 01122
Q ss_pred ceeecEEEEEEcCCeEEEEECCCcEEEEECC
Q 000055 2512 VVRAGVTDIQVVSRGFLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2512 ~V~a~VtsLafSPdGLaSGS~DGtIrIWDL~ 2542 (2548)
..+.|.++..+.-|-..+|+|..+.
T Consensus 209 ------phl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 209 ------PHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred ------CceEecCCCeEEEecCCeEEEEEEe
Confidence 2346887773333344567777776
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.92 E-value=0.0089 Score=79.87 Aligned_cols=181 Identities=15% Similarity=0.176 Sum_probs=121.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee
Q 000055 2282 YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS 2361 (2548)
Q Consensus 2282 dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s 2361 (2548)
++..++.|+-...+..+|+++.+..... .-....|.-...+++++.+|. ..|+|.+-|.++ .+.+++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~--------~v~a~~v~imR~Nnr~lf~G~---t~G~V~LrD~~s--~~~iht 212 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTT--------NVSASGVTIMRYNNRNLFCGD---TRGTVFLRDPNS--FETIHT 212 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeee--------eccCCceEEEEecCcEEEeec---ccceEEeecCCc--Cceeee
Confidence 3556788888888888999877543321 111222433445677787774 889999999986 788999
Q ss_pred eeccCCCeEEEEEccCCCCCCCCCCEEEEEeC---------CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCC
Q 000055 2362 ITCHEGGARSISVFDNDLGSGSVSPLIVTGGK---------GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ 2432 (2548)
Q Consensus 2362 l~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~---------DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp 2432 (2548)
+.+|++.|..+... |++|+++|. |..|+|||+|++..-..+..
T Consensus 213 ~~aHs~siSDfDv~---------GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~------------------- 264 (1118)
T KOG1275|consen 213 FDAHSGSISDFDVQ---------GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF------------------- 264 (1118)
T ss_pred eeccccceeeeecc---------CCeEEEeecccccccccccchhhhhhhhhhhccCCccc-------------------
Confidence 99999999998865 458888884 67789999986433222211
Q ss_pred CCCCccCCCCCceEEEcccCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCC-CcE-EEEecccccccccccCcccCC
Q 000055 2433 TGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN-TSLFLTGSKDGDVKLWDAKA-AQL-VYHWSKLHERHTFLQPSSRGF 2509 (2548)
Q Consensus 2433 dGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~T-gel-l~tL~~~Hs~hsfl~~tl~GH 2509 (2548)
+.++ .-+.|+|. ...++.++..|...+-|..+ +.+ ...+ +
T Consensus 265 --------------------~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~----------------~ 307 (1118)
T KOG1275|consen 265 --------------------PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK----------------M 307 (1118)
T ss_pred --------------------ccCc-hhhhhcccccceEEEEecccceeeccccccCCCcccee----------------E
Confidence 1111 34567774 45677788889988888332 122 1111 1
Q ss_pred CCceeecEEEEEEcCCe--EEEEECCCcEEEEE
Q 000055 2510 GGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2510 ~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
-......+..+++|++| ++-|-.+|.|.+|.
T Consensus 308 v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 308 VNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 11122346778999999 89999999999998
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.018 Score=76.74 Aligned_cols=181 Identities=16% Similarity=0.086 Sum_probs=118.6
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccccc
Q 000055 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p 2310 (2548)
+++++-|+-+|.|++.+.+..- ...+ .|... ..+|.+++||+.||+|.+-.+.+++....
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~-~~~~-----------~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~-- 108 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP-KTNF-----------DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ-- 108 (846)
T ss_pred cceeeeccccceEEEEecCCcc-cccc-----------ccccc------ccCCceEEEecCCCcEEEeeccCCcccee--
Confidence 6789999999999999966432 1111 12122 56799999999999999998877653321
Q ss_pred CccceeccCCcccEEEEcCC-----CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCC
Q 000055 2311 MESCLCFSSHAMDVSYITSS-----GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVS 2385 (2548)
Q Consensus 2311 ~~s~~t~~gH~~~V~afSpd-----GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g 2385 (2548)
..+..... +.+++|+ .+.+++|| .-| +.++.-+--..+.-..+..-.|.|.++.|..+
T Consensus 109 ----~df~rpik-sial~Pd~~~~~sk~fv~GG---~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~-------- 171 (846)
T KOG2066|consen 109 ----YDFKRPIK-SIALHPDFSRQQSKQFVSGG---MAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN-------- 171 (846)
T ss_pred ----EecCCcce-eEEeccchhhhhhhheeecC---cce-EEEehhhhhcCccceeeecCccceEEEEecCc--------
Confidence 11222222 2345554 56788887 445 77776442111111134445689999999754
Q ss_pred CEEEEEeCCCcEEEEeCCccccCceeeeecC--CCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000055 2386 PLIVTGGKGGDVGIHDFRYIATGKTKKHKHS--DRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2386 ~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~--~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
+++=++.+| |++|| ..+++.+..+.. .........+.+.|.++.+.+.+...+++|..+.+++
T Consensus 172 -lIAWand~G-v~vyd---~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~~~~ 236 (846)
T KOG2066|consen 172 -LIAWANDDG-VKVYD---TPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIKKRS 236 (846)
T ss_pred -EEEEecCCC-cEEEe---ccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEeccc
Confidence 888887666 89999 555565555422 2233445557788999999999999999988876444
No 309
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.83 E-value=0.3 Score=63.28 Aligned_cols=256 Identities=11% Similarity=0.044 Sum_probs=133.2
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEE-EEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000055 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISA-LQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vts-VaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
+..++.++.+|.++-+|..+|+.+-.+... +.+.+ -.. .+..++.+..+|.+..+|.++|+..-..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-----------~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA-----------GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC-----------CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 456777888999999999999887665421 11111 011 2456777888999999999998754322
Q ss_pred cCcc-ceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc--CC-----CeEEEEEccCCCCC
Q 000055 2310 PMES-CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH--EG-----GARSISVFDNDLGS 2381 (2548)
Q Consensus 2310 p~~s-~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH--s~-----~VtSLafsP~dlg~ 2381 (2548)
+... .....+...++. . ++ .++.++ .++.+...|..+ ++.+-..... .+ ....+..+|-
T Consensus 187 ~~~~~~~~~~~~~sP~v--~-~~-~v~~~~---~~g~v~a~d~~~--G~~~W~~~~~~~~~~~~~~~~~~~~~sP~---- 253 (394)
T PRK11138 187 NLDVPSLTLRGESAPAT--A-FG-GAIVGG---DNGRVSAVLMEQ--GQLIWQQRISQPTGATEIDRLVDVDTTPV---- 253 (394)
T ss_pred cCCCCcccccCCCCCEE--E-CC-EEEEEc---CCCEEEEEEccC--ChhhheeccccCCCccchhcccccCCCcE----
Confidence 1110 000111112221 1 23 344443 678888888765 3332222100 00 0001111111
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEcccCC-------
Q 000055 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYIPKAH------- 2453 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~~gH------- 2453 (2548)
-.+..+..++.+|.+..+| ..+|+.+-........ ..... +++. +...++.+..++...+.
T Consensus 254 -v~~~~vy~~~~~g~l~ald---~~tG~~~W~~~~~~~~------~~~~~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~ 322 (394)
T PRK11138 254 -VVGGVVYALAYNGNLVALD---LRSGQIVWKREYGSVN------DFAVD-GGRIYLVDQNDRVYALDTRGGVELWSQSD 322 (394)
T ss_pred -EECCEEEEEEcCCeEEEEE---CCCCCEEEeecCCCcc------CcEEE-CCEEEEEcCCCeEEEEECCCCcEEEcccc
Confidence 0133677778899999999 6677766443111100 01111 1111 33334444333322211
Q ss_pred --CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEE
Q 000055 2454 --LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCG 2531 (2548)
Q Consensus 2454 --~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS 2531 (2548)
.....+... .+..++.++.||.|.+.|..+|+.+.+.+- +... +.+ ...+..+.|+.++
T Consensus 323 ~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~-------------~~~~-~~s---~P~~~~~~l~v~t 383 (394)
T PRK11138 323 LLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV-------------DSSG-FLS---EPVVADDKLLIQA 383 (394)
T ss_pred cCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-------------CCCc-cee---CCEEECCEEEEEe
Confidence 111111112 356778899999999999999999876620 1111 111 1123333388899
Q ss_pred CCCcEEEEECC
Q 000055 2532 GDGSVKLIQLE 2542 (2548)
Q Consensus 2532 ~DGtIrIWDL~ 2542 (2548)
.||.|..++++
T Consensus 384 ~~G~l~~~~~~ 394 (394)
T PRK11138 384 RDGTVYAITRP 394 (394)
T ss_pred CCceEEEEeCC
Confidence 99999888753
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.81 E-value=0.11 Score=61.59 Aligned_cols=191 Identities=16% Similarity=0.192 Sum_probs=112.5
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccc
Q 000055 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNV 2308 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i 2308 (2548)
+++..+++++.++.++.||..+|+.+-.+.. ++. . ... . ...+..++.++.|+.+..+|..+|+..-.
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~-----~--~~~---~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGP-----I--SGA---P-VVDGGRVYVGTSDGSLYALDAKTGKVLWS 101 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSC-----G--GSG---E-EEETTEEEEEETTSEEEEEETTTSCEEEE
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccc-----c--cce---e-eecccccccccceeeeEecccCCcceeee
Confidence 3567788889999999999999998887764 211 0 111 1 22466677788889999999998875432
Q ss_pred ccCccceeccCCc-ccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCC----------eEEEEEccC
Q 000055 2309 RPMESCLCFSSHA-MDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGG----------ARSISVFDN 2377 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~-~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~----------VtSLafsP~ 2377 (2548)
..... ..... ........++..++.+. .++.|..+|.++ ++.+......... +.+-....+
T Consensus 102 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (238)
T PF13360_consen 102 IYLTS---SPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALDPKT--GKLLWKYPVGEPRGSSPISSFSDINGSPVISD 173 (238)
T ss_dssp EEE-S---SCTCSTB--SEEEEETTEEEEEE---TCSEEEEEETTT--TEEEEEEESSTT-SS--EEEETTEEEEEECCT
T ss_pred ecccc---ccccccccccCceEecCEEEEEe---ccCcEEEEecCC--CcEEEEeecCCCCCCcceeeecccccceEEEC
Confidence 10000 00001 00011222366677664 689999999886 5655555443311 111111112
Q ss_pred CCCCCCCCCEEEEEeCCCc-EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCC
Q 000055 2378 DLGSGSVSPLIVTGGKGGD-VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS 2456 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGt-VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~ 2456 (2548)
+ .+..++.+|. +.+ | ..+++.+ |.. . ...
T Consensus 174 -------~-~v~~~~~~g~~~~~-d---~~tg~~~-----------------------------------w~~-~--~~~ 203 (238)
T PF13360_consen 174 -------G-RVYVSSGDGRVVAV-D---LATGEKL-----------------------------------WSK-P--ISG 203 (238)
T ss_dssp -------T-EEEEECCTSSEEEE-E---TTTTEEE-----------------------------------EEE-C--SS-
T ss_pred -------C-EEEEEcCCCeEEEE-E---CCCCCEE-----------------------------------EEe-c--CCC
Confidence 3 6666666665 555 8 4455533 211 1 111
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 000055 2457 VTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2457 VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~ 2490 (2548)
+.. ...+++..++.++.|+.|..||+++|+.+.
T Consensus 204 ~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 204 IYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred ccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 222 134678888888899999999999999875
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.80 E-value=0.18 Score=70.23 Aligned_cols=207 Identities=15% Similarity=0.061 Sum_probs=123.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.|..++.-++.+..+|.|.+-|..+...... .. -.+.|.+++|+||+..++..+.++++.+-+-.
T Consensus 71 i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-g~----------vd~GI~aaswS~Dee~l~liT~~~tll~mT~~ 139 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALGDIILVDPETLELEIV-GN----------VDNGISAASWSPDEELLALITGRQTLLFMTKD 139 (1265)
T ss_pred eEEEEEecccceEEEEecCCcEEEEcccccceeee-ee----------ccCceEEEeecCCCcEEEEEeCCcEEEEEecc
Confidence 68999999999999999999999998776543211 11 12789999999999999999998888664320
Q ss_pred ----CCcc-----------cccccCccceecc------------------------CCcccEEEEcCCCCEEEEEeccC-
Q 000055 2302 ----VGGR-----------SNVRPMESCLCFS------------------------SHAMDVSYITSSGSVIAAAGHSS- 2341 (2548)
Q Consensus 2302 ----tgk~-----------i~i~p~~s~~t~~------------------------gH~~~V~afSpdGslLATgG~SS- 2341 (2548)
..+. +...=......+. .|...| +|..||+++|+.+..+
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~I-sWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSI-SWRGDGEYFAVSFVESE 218 (1265)
T ss_pred ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceE-EEccCCcEEEEEEEecc
Confidence 0000 0000000000011 122122 4778999999843211
Q ss_pred CC-CeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe---CCCcEEEEeCCccccCceeeeecCC
Q 000055 2342 NG-INVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG---KGGDVGIHDFRYIATGKTKKHKHSD 2417 (2548)
Q Consensus 2342 ~D-GtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS---~DGtVrLWDLR~l~TGk~l~tl~~~ 2417 (2548)
.+ +.|++||... ..-..-..-.+.=.+++|-|. |.++++-. .|+.|.+|.-. |-....+...
T Consensus 219 ~~~RkirV~drEg---~Lns~se~~~~l~~~LsWkPs-------gs~iA~iq~~~sd~~IvffErN----GL~hg~f~l~ 284 (1265)
T KOG1920|consen 219 TGTRKIRVYDREG---ALNSTSEPVEGLQHSLSWKPS-------GSLIAAIQCKTSDSDIVFFERN----GLRHGEFVLP 284 (1265)
T ss_pred CCceeEEEecccc---hhhcccCcccccccceeecCC-------CCeEeeeeecCCCCcEEEEecC----CccccccccC
Confidence 33 7999999861 111111112233457899887 66777654 46678888722 2211111000
Q ss_pred CCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEE---EeCCCcEEEEECCCC
Q 000055 2418 RGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLT---GSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2418 ~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaS---GS~DGtIrIWDl~Tg 2486 (2548)
+......|..++|+.++..|++ ......|++|-+.+.
T Consensus 285 --------------------------------~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 285 --------------------------------FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred --------------------------------CcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 0112234888999999988887 444445999987754
No 312
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.78 E-value=0.037 Score=73.04 Aligned_cols=255 Identities=14% Similarity=0.119 Sum_probs=140.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCC--CEEEEEeCCCcEEEEEc
Q 000055 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG--HRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG--~~LaSGS~DGtVrVWDl 2300 (2548)
..++|+|.-+-++-......+.|+|++-..++..+... .+.+.-+.+-|++ ..|+..-.||.+.+|-.
T Consensus 234 a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie----------r~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 234 AQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE----------RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred HhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec----------cCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 45677776555554555667899998876666655321 2556667777764 56889999999999986
Q ss_pred CCCcccccccCcccee-ccCCcccEE----------EEcCC-CCEEEEEeccCCCCeEEEEECCCCCCCc----------
Q 000055 2301 EVGGRSNVRPMESCLC-FSSHAMDVS----------YITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSS---------- 2358 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t-~~gH~~~V~----------afSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~---------- 2358 (2548)
+........+...... .......++ ...|. .+.++.-- .+|.+.+|.+..+....
T Consensus 304 k~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~---s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 304 KEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLY---SSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred eccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhh---hcchhHHHhhhcCCcCccccccccccc
Confidence 5422111111111000 000000010 11222 22222211 36677778776311000
Q ss_pred -------------------ceeeeccCCCeEEEEEccCCCC----CCCC-------CCEEEEEeCCCcEEEEeCCccccC
Q 000055 2359 -------------------RASITCHEGGARSISVFDNDLG----SGSV-------SPLIVTGGKGGDVGIHDFRYIATG 2408 (2548)
Q Consensus 2359 -------------------v~sl~gHs~~VtSLafsP~dlg----~gs~-------g~lLVSGS~DGtVrLWDLR~l~TG 2408 (2548)
+....+|..+.+++...|-..- +.+. -++++.|...|+|.++| +.++
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvd---vst~ 457 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVD---VSTN 457 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEE---ecch
Confidence 0011135556666555443200 0000 12566677777777777 3333
Q ss_pred ceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEE---------EEeCCCcEE
Q 000055 2409 KTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFL---------TGSKDGDVK 2479 (2548)
Q Consensus 2409 k~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~La---------SGS~DGtIr 2479 (2548)
.....+ ..|.+.|.++.|--..+++- +|+.-+.+.
T Consensus 458 ~v~~~f------------------------------------svht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~ 501 (1062)
T KOG1912|consen 458 AVAASF------------------------------------SVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLV 501 (1062)
T ss_pred hhhhhh------------------------------------cccccceeeeeeccceeEEEeeeccccccccceeeeEE
Confidence 332222 56899999999976555442 223334677
Q ss_pred EEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000055 2480 LWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2480 IWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
|-|+++|.-.. |+|-.+.-.+.|.-+..|..| ++..-.|.-+.+||+++-
T Consensus 502 vtdLrtGlsk~---------------fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 502 VTDLRTGLSKR---------------FRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred EEEcccccccc---------------cccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 78888876543 355444445677778888888 778889999999999653
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.01 Score=74.44 Aligned_cols=219 Identities=17% Similarity=0.112 Sum_probs=135.4
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCC-CCe
Q 000055 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSN-GIN 2345 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~-DGt 2345 (2548)
.|.+.|+.+.-. -.+++.+++.||.++.|--..-.- .+-.+.+..|...+. +.+-+|.++.+.+ + |..
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG-----vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~---d~Dhs 77 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG-----VEFVKHFRAHLGVILSLAVSYDGWLFRSVE---DPDHS 77 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccc-----eeehhhhHHHHHHHHhhhccccceeEeecc---Ccccc
Confidence 366777776544 467899999999999997543111 112234556665554 3677899999976 5 999
Q ss_pred EEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000055 2346 VVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2346 VrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
++++|+..-+.-....+..-.+.+..+ .++.+ ....+-++.-.+|.|.++|-+. .......+
T Consensus 78 ~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd----~~s~IAVs~~~sg~i~VvD~~~--d~~q~~~f----------- 139 (558)
T KOG0882|consen 78 VKVFDVENFDMINMIKLVDLPGFAEWV-TSKGD----KISLIAVSLFKSGKIFVVDGFG--DFCQDGYF----------- 139 (558)
T ss_pred eeEEEeeccchhhhcccccCCCceEEe-cCCCC----eeeeEEeecccCCCcEEECCcC--CcCcccee-----------
Confidence 999998752211112222222233222 23321 1122344445789999999431 11111111
Q ss_pred cccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC------CcEEEEeccccccc
Q 000055 2426 CAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA------AQLVYHWSKLHERH 2499 (2548)
Q Consensus 2426 ~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T------gell~tL~~~Hs~h 2499 (2548)
..-|..+|.++.+.|.+..+++....|.|.-|.... .+....+ .|+.
T Consensus 140 ------------------------kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~--K~eT- 192 (558)
T KOG0882|consen 140 ------------------------KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL--KHET- 192 (558)
T ss_pred ------------------------cccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccc--cccc-
Confidence 145999999999999999999999999999999872 1222222 1211
Q ss_pred ccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCccc
Q 000055 2500 TFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQHR 2547 (2548)
Q Consensus 2500 sfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~lr 2547 (2548)
++...-+.- +...++.|+|+| +.+-+.|.+|+++++.+|.+.
T Consensus 193 -dLy~f~K~K-----t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 193 -DLYGFPKAK-----TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred -hhhcccccc-----cCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 111111111 234677999999 888889999999999988653
No 314
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.69 E-value=0.095 Score=63.69 Aligned_cols=168 Identities=15% Similarity=0.231 Sum_probs=106.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC------CCEEEEEeCCCcE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY------GHRFASAALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd------G~~LaSGS~DGtV 2295 (2548)
.+.++|+||+.+||.+...|+|+++|+...+ +..+. +.+... ..-..+|..+.|-+. ...|++-..+|.+
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~--p~~~~~-~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIP--PAMSFP-GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcC--cccccC-CccccceeeeEeeccccccccceeEEEEecccee
Confidence 4889999999999999999999999987533 33322 122111 112367888888653 2357777888998
Q ss_pred EEEEcCCCcccccccCcccee--ccC-CcccEE--EEcCCCCEEEEEeccCCCC--------eEEEEECCCCCC------
Q 000055 2296 CTWQLEVGGRSNVRPMESCLC--FSS-HAMDVS--YITSSGSVIAAAGHSSNGI--------NVVVWDTLAPPT------ 2356 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t--~~g-H~~~V~--afSpdGslLATgG~SS~DG--------tVrIWDl~t~~~------ 2356 (2548)
+-|-+..+.... +....+ +.. +...|. .++|..++|++||+...+. -+..|.+-....
T Consensus 122 ~Sy~vs~gt~q~---y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~ 198 (282)
T PF15492_consen 122 RSYLVSVGTNQG---YQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVT 198 (282)
T ss_pred eeEEEEcccCCc---ceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcc
Confidence 888774432111 111111 222 234454 3788888999888643221 356676532100
Q ss_pred ---C---------cc---ee---e---eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCC
Q 000055 2357 ---S---------SR---AS---I---TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2357 ---k---------~v---~s---l---~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR 2403 (2548)
. .. .. + ....+.|..+..+|+ +..||+...+|.|.+|++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd-------g~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD-------GSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred ccCccccccccccceeeccceeeeeccccCCCceEEEEECCC-------CCEEEEEEcCCeEEEEecC
Confidence 0 00 00 0 123568889999999 8899999999999999964
No 315
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.58 E-value=0.27 Score=63.74 Aligned_cols=274 Identities=11% Similarity=0.048 Sum_probs=136.2
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeE-EEEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000055 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS-ALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vt-sVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
+..+.+++.+|.+.-+|..+|+.+-..........-...+...+. .+.. ++..++.++.+|.+..+|.++|+..-..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 557777888899999999999887665431100000000000000 0111 3567888889999999999998754322
Q ss_pred cCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE-EEEccCCCCCCCCCCEE
Q 000055 2310 PMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS-ISVFDNDLGSGSVSPLI 2388 (2548)
Q Consensus 2310 p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS-LafsP~dlg~gs~g~lL 2388 (2548)
.... ......+. .++ .++.+. .++.+..+|..+ ++.+-........... ..-+|. ..+..+
T Consensus 147 ~~~~----~~~ssP~v---~~~-~v~v~~---~~g~l~ald~~t--G~~~W~~~~~~~~~~~~~~~sP~-----v~~~~v 208 (394)
T PRK11138 147 KVAG----EALSRPVV---SDG-LVLVHT---SNGMLQALNESD--GAVKWTVNLDVPSLTLRGESAPA-----TAFGGA 208 (394)
T ss_pred cCCC----ceecCCEE---ECC-EEEEEC---CCCEEEEEEccC--CCEeeeecCCCCcccccCCCCCE-----EECCEE
Confidence 1100 00111111 134 444443 678899999876 4444333321110000 000111 002256
Q ss_pred EEEeCCCcEEEEeCCccccCceeeeecCCCCCC-Cc--cccccccCC---CCCC-ccCCCCCceEEEcccCCC------C
Q 000055 2389 VTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS-SI--NTCAHADAQ---TGSG-SKPGDQNGMLWYIPKAHL------G 2455 (2548)
Q Consensus 2389 VSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s-~~--~~~~vafSp---dGk~-v~s~D~sv~Iwdi~~gH~------~ 2455 (2548)
+.++.+|.+..+| ..+|+.+-......... .. ....+..+| ++.. +...++.+..+|...+.. +
T Consensus 209 ~~~~~~g~v~a~d---~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 285 (394)
T PRK11138 209 IVGGDNGRVSAVL---MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG 285 (394)
T ss_pred EEEcCCCEEEEEE---ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence 7778899999988 55666544321110000 00 000000011 2222 333344444444322211 1
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEECCCc
Q 000055 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGS 2535 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGt 2535 (2548)
....+. ..+..++.++.||.+..+|..+|+.+...+. ..+. ...+. .+..+.++.++.||.
T Consensus 286 ~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~------------~~~~-~~~sp----~v~~g~l~v~~~~G~ 346 (394)
T PRK11138 286 SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSD------------LLHR-LLTAP----VLYNGYLVVGDSEGY 346 (394)
T ss_pred CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccc------------cCCC-cccCC----EEECCEEEEEeCCCE
Confidence 111111 2456777888999999999999988764310 0010 01111 222222778889999
Q ss_pred EEEEECCCCcc
Q 000055 2536 VKLIQLEDYQH 2546 (2548)
Q Consensus 2536 IrIWDL~sg~l 2546 (2548)
|.+.|.++|..
T Consensus 347 l~~ld~~tG~~ 357 (394)
T PRK11138 347 LHWINREDGRF 357 (394)
T ss_pred EEEEECCCCCE
Confidence 99999888753
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.12 Score=64.87 Aligned_cols=73 Identities=14% Similarity=0.183 Sum_probs=61.6
Q ss_pred EEEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEE
Q 000055 2221 STRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2221 ~V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVW 2298 (2548)
.++.++|+|..+ ++..++.+..|.|.|+.+...+..+.. + ..+++++|.-+ .++++.|..+|.|.+|
T Consensus 195 ~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a----------~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 195 FIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA----------Y-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred hhhhhccCccccceeeeeccCceEEEEecccceeeeheec----------c-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 378999999887 777899999999999999887777643 2 78999999875 6778888999999999
Q ss_pred EcCCCc
Q 000055 2299 QLEVGG 2304 (2548)
Q Consensus 2299 Dl~tgk 2304 (2548)
|++...
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 998653
No 317
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.29 E-value=0.88 Score=54.96 Aligned_cols=165 Identities=16% Similarity=0.129 Sum_probs=96.6
Q ss_pred EEEEEEc-CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC--------
Q 000055 2222 TRAFSSH-PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-------- 2292 (2548)
Q Consensus 2222 V~~VsfS-PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-------- 2292 (2548)
...+.++ +++.+ +.+..++ +.++|..+++....+....+. ......+++++.++|+..++....
T Consensus 42 ~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~~~~~~~~-----~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~ 114 (246)
T PF08450_consen 42 PNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVLADLPDGG-----VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDP 114 (246)
T ss_dssp EEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEEEEEETTC-----SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGS
T ss_pred CceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEEeeccCCC-----cccCCCceEEEcCCCCEEEEecCCCccccccc
Confidence 4666777 56554 4445544 555699888655544432111 123678999999999977776544
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc--ceee---eccCC
Q 000055 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASI---TCHEG 2367 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~--v~sl---~gHs~ 2367 (2548)
|.|..++.. ++.... . -.-+...-.+++|+++.++.+. +..+.|..+++....... ...+ ..-.+
T Consensus 115 g~v~~~~~~-~~~~~~------~-~~~~~pNGi~~s~dg~~lyv~d--s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 184 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVV------A-DGLGFPNGIAFSPDGKTLYVAD--SFNGRIWRFDLDADGGELSNRRVFIDFPGGPG 184 (246)
T ss_dssp EEEEEEETT-SEEEEE------E-EEESSEEEEEEETTSSEEEEEE--TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC
T ss_pred cceEEECCC-CeEEEE------e-cCcccccceEECCcchheeecc--cccceeEEEeccccccceeeeeeEEEcCCCCc
Confidence 345555555 321110 0 0011112235899999887765 578889999986532211 1222 22223
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000055 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
....+++..+ +++.++....+.|.++| .. |+.+..+
T Consensus 185 ~pDG~~vD~~-------G~l~va~~~~~~I~~~~---p~-G~~~~~i 220 (246)
T PF08450_consen 185 YPDGLAVDSD-------GNLWVADWGGGRIVVFD---PD-GKLLREI 220 (246)
T ss_dssp EEEEEEEBTT-------S-EEEEEETTTEEEEEE---TT-SCEEEEE
T ss_pred CCCcceEcCC-------CCEEEEEcCCCEEEEEC---CC-ccEEEEE
Confidence 4788998887 77888888899999999 33 6666554
No 318
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.19 E-value=1.6 Score=55.19 Aligned_cols=259 Identities=14% Similarity=0.120 Sum_probs=137.9
Q ss_pred CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe----------CCCcEEEEEcCCCcccc--c
Q 000055 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------LDGTVCTWQLEVGGRSN--V 2308 (2548)
Q Consensus 2241 GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS----------~DGtVrVWDl~tgk~i~--i 2308 (2548)
+.++++|.++++.+..+.. +-.-.+..+|+++.++++. ..-.|.+||..+-.... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~------------g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~ 84 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT------------GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE 84 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE------------ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE
T ss_pred ceEEEEECCCCcEEEEeec------------ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe
Confidence 4799999999988877754 4455677899999988753 23478999998763221 1
Q ss_pred ccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEE
Q 000055 2309 RPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLI 2388 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lL 2388 (2548)
.|... ............++.||+++++.-. +--..|.|-|+.. .+.+..+. ..++..+- |.. ..-+
T Consensus 85 iP~k~-R~~~~~~~~~~~ls~dgk~~~V~N~-TPa~SVtVVDl~~--~kvv~ei~--~PGC~~iy--P~~------~~~F 150 (342)
T PF06433_consen 85 IPPKP-RAQVVPYKNMFALSADGKFLYVQNF-TPATSVTVVDLAA--KKVVGEID--TPGCWLIY--PSG------NRGF 150 (342)
T ss_dssp ETTS--B--BS--GGGEEE-TTSSEEEEEEE-SSSEEEEEEETTT--TEEEEEEE--GTSEEEEE--EEE------TTEE
T ss_pred cCCcc-hheecccccceEEccCCcEEEEEcc-CCCCeEEEEECCC--Cceeeeec--CCCEEEEE--ecC------CCce
Confidence 11110 0011112233458889988877643 2566788999875 44444443 23344433 331 3468
Q ss_pred EEEeCCCcEEEEeCCccccCceeeeec-CCCCCCCccccccccCCC-CCC-ccCCCCCceE-------------EEcccC
Q 000055 2389 VTGGKGGDVGIHDFRYIATGKTKKHKH-SDRGGSSINTCAHADAQT-GSG-SKPGDQNGML-------------WYIPKA 2452 (2548)
Q Consensus 2389 VSGS~DGtVrLWDLR~l~TGk~l~tl~-~~~~~s~~~~~~vafSpd-Gk~-v~s~D~sv~I-------------wdi~~g 2452 (2548)
.+-+.||++.-..+. ..|+..+... .......+.....++... +.+ -.+.++.++- |.+...
T Consensus 151 ~~lC~DGsl~~v~Ld--~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~ 228 (342)
T PF06433_consen 151 SMLCGDGSLLTVTLD--ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTD 228 (342)
T ss_dssp EEEETTSCEEEEEET--STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-H
T ss_pred EEEecCCceEEEEEC--CCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCc
Confidence 888899999888853 2455442210 000111111111111111 222 1223333322 222210
Q ss_pred ---C----CCCEEEEEEeCCCCEEEEEeC---CC-------cEEEEECCCCcEEEEecccccccccccCcccCCCCceee
Q 000055 2453 ---H----LGSVTRISTVPNTSLFLTGSK---DG-------DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2453 ---H----~~~VtsLafSPdG~~LaSGS~---DG-------tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
- .+.-.-+++++....|+..-. +| .|.++|+.+++.+.+++.+ .
T Consensus 229 ~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-------------------~ 289 (342)
T PF06433_consen 229 AEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-------------------H 289 (342)
T ss_dssp HHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-------------------E
T ss_pred cccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-------------------C
Confidence 0 112234667765554444321 22 4788899999999988411 1
Q ss_pred cEEEEEEcCCe---EEE-EECCCcEEEEECCCCcc
Q 000055 2516 GVTDIQVVSRG---FLS-CGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2516 ~VtsLafSPdG---LaS-GS~DGtIrIWDL~sg~l 2546 (2548)
.+.+|+++.+. |++ ...++.+.+||..+|.+
T Consensus 290 ~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 290 PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 24567888887 444 45689999999998853
No 319
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.12 E-value=0.7 Score=61.04 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=59.0
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEE
Q 000055 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS 2529 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS 2529 (2548)
.....|.+++++|+++.|+.|+.||.|.+||...+....+- .. ...+.++|+|+| +++
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k------a~--------------~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK------AE--------------FIPTLIAWHPDGAIFVV 316 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee------ec--------------ccceEEEEcCCCcEEEE
Confidence 46778999999999999999999999999998766333211 11 235678999999 778
Q ss_pred EECCCcEEEEECCCCc
Q 000055 2530 CGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2530 GS~DGtIrIWDL~sg~ 2545 (2548)
|+.-|.+.+||+.-+.
T Consensus 317 ~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 317 GSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCceEEEEEeecCc
Confidence 8888999999986543
No 320
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.12 E-value=0.36 Score=64.39 Aligned_cols=142 Identities=14% Similarity=0.149 Sum_probs=95.7
Q ss_pred eEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000055 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2220 V~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
+.-+|++ ..+++++.|+.-|.+++|+-..+.....- ..+..+.+..+..+++..++|.|+..|.|.++.
T Consensus 36 v~lTc~d--st~~~l~~GsS~G~lyl~~R~~~~~~~~~---------~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~q 104 (726)
T KOG3621|consen 36 VKLTCVD--ATEEYLAMGSSAGSVYLYNRHTGEMRKLK---------NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQ 104 (726)
T ss_pred EEEEEee--cCCceEEEecccceEEEEecCchhhhccc---------ccCccceEEEEEecchhHhhhhhcCCceEEeeh
Confidence 3345555 78899999999999999998877654331 122236677777888899999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCC-C-CCcceeeeccCCCeEEEEEc
Q 000055 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAP-P-TSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~-~-~k~v~sl~gHs~~VtSLafs 2375 (2548)
++.+..-... ........|...|++ |++++..+.+|. ..|.|..-.+... - ....+.+....+.|-.+.+.
T Consensus 105 l~~~~p~~~~--~~t~~d~~~~~rVTal~Ws~~~~k~ysGD---~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 105 LNKELPRDLD--YVTPCDKSHKCRVTALEWSKNGMKLYSGD---SQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred hhccCCCcce--eeccccccCCceEEEEEecccccEEeecC---CCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 9864311110 011123346778875 899999999986 6788888777541 0 11233444456677777766
Q ss_pred cC
Q 000055 2376 DN 2377 (2548)
Q Consensus 2376 P~ 2377 (2548)
..
T Consensus 180 q~ 181 (726)
T KOG3621|consen 180 QS 181 (726)
T ss_pred cc
Confidence 44
No 321
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.96 E-value=0.004 Score=80.57 Aligned_cols=205 Identities=18% Similarity=0.181 Sum_probs=120.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEE----eCCCcEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASA----ALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSG----S~DGtVr 2296 (2548)
+.+..++-+...+++|..+|.|.+-.......- ++. -.++|....++++|++ |.+.||.| ..|..+.
T Consensus 61 cva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------s~E-~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 61 CVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------SAE-VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred eehhhcCCchhhhhhccccCceEEeecCCcccc-------cce-ecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 333344455568889999999999887643221 111 2344668899999998 55666665 2356899
Q ss_pred EEEcCCCcccccccCccceeccCCc--ccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000055 2297 TWQLEVGGRSNVRPMESCLCFSSHA--MDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~--~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
+||+.++-. .|.+..+...+.. ..+.|+-.+.+++.+|. ..+.+.++|++. .+.....-.+..+..+.+
T Consensus 133 Iwdi~s~lt---vPke~~~fs~~~l~gqns~cwlrd~klvlaGm---~sr~~~ifdlRq---s~~~~~svnTk~vqG~tV 203 (783)
T KOG1008|consen 133 IWDINSLLT---VPKESPLFSSSTLDGQNSVCWLRDTKLVLAGM---TSRSVHIFDLRQ---SLDSVSSVNTKYVQGITV 203 (783)
T ss_pred ceecccccC---CCccccccccccccCccccccccCcchhhccc---ccchhhhhhhhh---hhhhhhhhhhhhccccee
Confidence 999987632 2222222111111 12334556777777764 678999999984 222222223445666777
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEe-CCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000055 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHD-FRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWD-LR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
.|-. +.++++-. ||.|.+|| .|.++ ..++.+.. ++ ...
T Consensus 204 dp~~------~nY~cs~~-dg~iAiwD~~rnie--npl~~i~~--------------~~------------------N~~ 242 (783)
T KOG1008|consen 204 DPFS------PNYFCSNS-DGDIAIWDTYRNIE--NPLQIILR--------------NE------------------NKK 242 (783)
T ss_pred cCCC------CCceeccc-cCceeeccchhhhc--cHHHHHhh--------------CC------------------CCc
Confidence 7742 55777766 99999999 33211 11111100 00 111
Q ss_pred CCCEEEEEEeCCC-CEEEEEeC-CCcEEEEECC
Q 000055 2454 LGSVTRISTVPNT-SLFLTGSK-DGDVKLWDAK 2484 (2548)
Q Consensus 2454 ~~~VtsLafSPdG-~~LaSGS~-DGtIrIWDl~ 2484 (2548)
...+..++|.|.. ..+++.+. .++|+.+|+.
T Consensus 243 ~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 243 PKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 2257889999943 34555554 5689999876
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=0.96 Score=61.57 Aligned_cols=205 Identities=12% Similarity=0.095 Sum_probs=117.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCC-eEEEEEccCCCEEEEEeCCC-----cE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALAS-ISALQFDHYGHRFASAALDG-----TV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~-VtsVaFSPdG~~LaSGS~DG-----tV 2295 (2548)
+.|++ +++..++.|+.+|.|.+.+-. -+.+..+ ..+. .. |..+....+.++|++.+.|+ .|
T Consensus 28 isc~~--s~~~~vvigt~~G~V~~Ln~s-~~~~~~f---qa~~-------~siv~~L~~~~~~~~L~sv~Ed~~~np~ll 94 (933)
T KOG2114|consen 28 ISCCS--SSTGSVVIGTADGRVVILNSS-FQLIRGF---QAYE-------QSIVQFLYILNKQNFLFSVGEDEQGNPVLL 94 (933)
T ss_pred eeEEc--CCCceEEEeeccccEEEeccc-ceeeehh---eecc-------hhhhhHhhcccCceEEEEEeecCCCCceEE
Confidence 45544 889999999999988887732 1111223 2221 33 44444444456788877775 48
Q ss_pred EEEEcCCCcccccccCccc---eec----c--CCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCC--CCCCcceeeec
Q 000055 2296 CTWQLEVGGRSNVRPMESC---LCF----S--SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLA--PPTSSRASITC 2364 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~---~t~----~--gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t--~~~k~v~sl~g 2364 (2548)
++|+++.-+.... |. .. ..+ + .....+.+++.+-+.+|.|= .||.|..+.=+- ..+........
T Consensus 95 kiw~lek~~~n~s-P~-c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf---~nG~V~~~~GDi~RDrgsr~~~~~~ 169 (933)
T KOG2114|consen 95 KIWDLEKVDKNNS-PQ-CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGF---TNGLVICYKGDILRDRGSRQDYSHR 169 (933)
T ss_pred EEecccccCCCCC-cc-eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEe---cCcEEEEEcCcchhccccceeeecc
Confidence 9999975432110 10 11 001 1 11223345777767777764 789988875321 11111112222
Q ss_pred cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCce--eeeecCCCCCCCccccccccCCCCCCccCCCC
Q 000055 2365 HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKT--KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQ 2442 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~--l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~ 2442 (2548)
-.++|+.+.+..+ +..++-...-..|.+|.+. |+. ...+
T Consensus 170 ~~~pITgL~~~~d-------~~s~lFv~Tt~~V~~y~l~----gr~p~~~~l---------------------------- 210 (933)
T KOG2114|consen 170 GKEPITGLALRSD-------GKSVLFVATTEQVMLYSLS----GRTPSLKVL---------------------------- 210 (933)
T ss_pred CCCCceeeEEecC-------CceeEEEEecceeEEEEec----CCCcceeee----------------------------
Confidence 3578999998877 3332222334568888843 232 1111
Q ss_pred CceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000055 2443 NGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2443 sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
..|..++.|.++++....|++++ +.-|.+||....++-.+|
T Consensus 211 --------d~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 211 --------DNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred --------ccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 45777888999988666455544 347899998877777666
No 323
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.67 E-value=2.4 Score=51.92 Aligned_cols=229 Identities=15% Similarity=0.176 Sum_probs=121.4
Q ss_pred CCCCEEEEEECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccc
Q 000055 2229 PLRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
..++.|+.|+.+| +.+++... ....... +...|..+...++-+.+++-+ ||.+.++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~------------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL------------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVS 70 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe------------ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccc
Confidence 4578899999999 99999832 2222222 124599999999877666665 4999999987543221
Q ss_pred ccc-Cccce-----eccCCcccEEEEc----C-CCCEEEEEeccCCCCeEEEEECCCC--CC-CcceeeeccCCCeEEEE
Q 000055 2308 VRP-MESCL-----CFSSHAMDVSYIT----S-SGSVIAAAGHSSNGINVVVWDTLAP--PT-SSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2308 i~p-~~s~~-----t~~gH~~~V~afS----p-dGslLATgG~SS~DGtVrIWDl~t~--~~-k~v~sl~gHs~~VtSLa 2373 (2548)
... ....+ ........+..+. . .+..++++ ..++|.+|....+ .. +....+. -.+.+.++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va----~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~ 145 (275)
T PF00780_consen 71 TSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA----VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIA 145 (275)
T ss_pred ccccccccccccccccccccCCeeEEeeccccccceEEEEE----ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEE
Confidence 100 00000 0111122333333 2 33455554 4679999887652 12 2334443 357889999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC-------CCccccccccCCCCCCccCCCCCceE
Q 000055 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG-------SSINTCAHADAQTGSGSKPGDQNGML 2446 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~-------s~~~~~~vafSpdGk~v~s~D~sv~I 2446 (2548)
|.++ .++.|..++ ..+.|+. ++.....+...... .......+.--+++.++...++.+..
T Consensus 146 ~~~~---------~i~v~~~~~-f~~idl~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~f 212 (275)
T PF00780_consen 146 FLGN---------KICVGTSKG-FYLIDLN---TGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVF 212 (275)
T ss_pred EeCC---------EEEEEeCCc-eEEEecC---CCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEE
Confidence 9865 777777555 6778854 33332222101000 00001111111222332222222222
Q ss_pred EEcccCC---------CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000055 2447 WYIPKAH---------LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2447 wdi~~gH---------~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.+. .|. .....++++ ...||+..+. +.|.||++.+++++++++
T Consensus 213 v~~-~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 213 VNK-NGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred EcC-CCCcCcccEEEcCCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 221 111 123334444 3468877765 459999999999999884
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.57 E-value=0.13 Score=68.34 Aligned_cols=106 Identities=16% Similarity=0.202 Sum_probs=78.2
Q ss_pred EEEEcCCCCEEEEEE----CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000055 2224 AFSSHPLRPFFLVGS----SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS----~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
-.+|||..+++++++ ..|+|.||- ++|++.... ..+.| +++++|+|..-.|+.|-.-|.+.+|.
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--------t~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~ 87 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--------TYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQK 87 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--------cccee---hhhhccChHHHHHhhccccceeEEEe
Confidence 357899999999764 457888875 555533322 23333 67799999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECC
Q 000055 2300 LEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~ 2352 (2548)
..+.+... ....|..++. .|+++|..++++. .-|.|.+|...
T Consensus 88 ~~~~e~ht--------v~~th~a~i~~l~wS~~G~~l~t~d---~~g~v~lwr~d 131 (1416)
T KOG3617|consen 88 TNTTETHT--------VVETHPAPIQGLDWSHDGTVLMTLD---NPGSVHLWRYD 131 (1416)
T ss_pred cCCceeee--------eccCCCCCceeEEecCCCCeEEEcC---CCceeEEEEee
Confidence 87654221 1345666665 5999999999986 67999999876
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=0.28 Score=66.34 Aligned_cols=191 Identities=9% Similarity=0.057 Sum_probs=116.9
Q ss_pred cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCC-eEEEEEccCCCCCCCCCCEEEEEeCCC-----c
Q 000055 2323 DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGG-ARSISVFDNDLGSGSVSPLIVTGGKGG-----D 2396 (2548)
Q Consensus 2323 ~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~-VtSLafsP~dlg~gs~g~lLVSGS~DG-----t 2396 (2548)
.+.++++++..++.|. .+|.|.+.+-. .+.++.++++... |..+..... ..+|++-+.|+ .
T Consensus 27 ~isc~~s~~~~vvigt---~~G~V~~Ln~s---~~~~~~fqa~~~siv~~L~~~~~-------~~~L~sv~Ed~~~np~l 93 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGT---ADGRVVILNSS---FQLIRGFQAYEQSIVQFLYILNK-------QNFLFSVGEDEQGNPVL 93 (933)
T ss_pred ceeEEcCCCceEEEee---ccccEEEeccc---ceeeehheecchhhhhHhhcccC-------ceEEEEEeecCCCCceE
Confidence 7788999999999985 89988888764 3455788888877 444443333 45788877665 4
Q ss_pred EEEEeCCccccC---cee---eeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEE--c----------ccCCCCC
Q 000055 2397 VGIHDFRYIATG---KTK---KHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWY--I----------PKAHLGS 2456 (2548)
Q Consensus 2397 VrLWDLR~l~TG---k~l---~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwd--i----------~~gH~~~ 2456 (2548)
|++||+...+.. .++ +.+...........+.++++.+-+. +|-.+|.+..+. + ...-..+
T Consensus 94 lkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~p 173 (933)
T KOG2114|consen 94 LKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEP 173 (933)
T ss_pred EEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCC
Confidence 899998654332 344 2222222334455667778887665 445555555543 1 1123569
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCC
Q 000055 2457 VTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDG 2534 (2548)
Q Consensus 2457 VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DG 2534 (2548)
|+++++..++..++-...-..|.+|.+....+.... +..||...+ +..+++.. +++|+ +.
T Consensus 174 ITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~-------------ld~~G~~ln----Css~~~~t~qfIca~-~e 235 (933)
T KOG2114|consen 174 ITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKV-------------LDNNGISLN----CSSFSDGTYQFICAG-SE 235 (933)
T ss_pred ceeeEEecCCceeEEEEecceeEEEEecCCCcceee-------------eccCCccce----eeecCCCCccEEEec-Cc
Confidence 999999988876222223457899998844322221 255654443 33566554 55443 45
Q ss_pred cEEEEECCCC
Q 000055 2535 SVKLIQLEDY 2544 (2548)
Q Consensus 2535 tIrIWDL~sg 2544 (2548)
.+.+|+.+..
T Consensus 236 ~l~fY~sd~~ 245 (933)
T KOG2114|consen 236 FLYFYDSDGR 245 (933)
T ss_pred eEEEEcCCCc
Confidence 6788887653
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.55 E-value=0.04 Score=72.11 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=59.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.|.+++|+...++.|+.||+|.+||..++.....- +.-..+.++|+|+|..+++|+..|.+.+||+.
T Consensus 262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k------------a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK------------AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee------------ecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 688899999999999999999999998876433221 12457899999999999999999999999987
Q ss_pred CC
Q 000055 2302 VG 2303 (2548)
Q Consensus 2302 tg 2303 (2548)
-+
T Consensus 330 Ls 331 (545)
T PF11768_consen 330 LS 331 (545)
T ss_pred cC
Confidence 44
No 327
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.48 E-value=2.7 Score=50.85 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=51.9
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeE-EEEEccCCCEEEEEeCCCcEEEEEcCCCcccc
Q 000055 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS-ALQFDHYGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vt-sVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
-|++++.|...|.+++-+..+|+....+... +.|. .-...+++..+..|+.|++....|..+..++.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-----------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-----------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeeh-----------hhhccceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence 3788999999999999999999877666432 2222 22346689999999999999999998776543
No 328
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.48 E-value=0.03 Score=74.31 Aligned_cols=181 Identities=12% Similarity=0.113 Sum_probs=103.8
Q ss_pred CCCCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE
Q 000055 2212 DPPATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA 2289 (2548)
Q Consensus 2212 ~p~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG 2289 (2548)
.+...+..++ -+|++|+-+.+.|++|+-.|.|+++++.+|.....+.+ |..+|+-+.=+.+|..+++.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc----------H~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC----------HQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc----------cccccccccccCCcceeeee
Confidence 3344444443 68899999999999999999999999999987666543 45667766666666655554
Q ss_pred eCCC--cEEEEEc---------------------------------------CCCcccccccCccceeccCCcccEEEEc
Q 000055 2290 ALDG--TVCTWQL---------------------------------------EVGGRSNVRPMESCLCFSSHAMDVSYIT 2328 (2548)
Q Consensus 2290 S~DG--tVrVWDl---------------------------------------~tgk~i~i~p~~s~~t~~gH~~~V~afS 2328 (2548)
+.-. -..+|++ +++...... .....-.........|+
T Consensus 1162 ss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty--lt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY--LTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred ccccCchHHHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHh--cCcchhhhhhccccccC
Confidence 3322 2344554 333211100 00000000111222378
Q ss_pred CCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccC
Q 000055 2329 SSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATG 2408 (2548)
Q Consensus 2329 pdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TG 2408 (2548)
|+..+|.- || .+||++. .+.++.|..-+..+ .-.|+|. |..++..+ .|||+|. -
T Consensus 1240 P~D~LIln------dG--vLWDvR~--~~aIh~FD~ft~~~-~G~FHP~-------g~eVIINS-----EIwD~RT---F 1293 (1516)
T KOG1832|consen 1240 PCDTLILN------DG--VLWDVRI--PEAIHRFDQFTDYG-GGGFHPS-------GNEVIINS-----EIWDMRT---F 1293 (1516)
T ss_pred CCcceEee------Cc--eeeeecc--HHHHhhhhhheecc-cccccCC-------CceEEeec-----hhhhhHH---H
Confidence 88777765 33 6899987 35566665433222 2246787 66776655 5899764 2
Q ss_pred ceeeeecCCCCCCCccccccccCCCCCC
Q 000055 2409 KTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2409 k~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
+.+++. .....|.+.|+..|..
T Consensus 1294 ~lLh~V------P~Ldqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1294 KLLHSV------PSLDQCAVTFNSTGDV 1315 (1516)
T ss_pred HHHhcC------ccccceEEEeccCccc
Confidence 333222 1223455667777765
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.26 E-value=0.16 Score=67.66 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=60.8
Q ss_pred eEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000055 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2220 V~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
+.+.+++|||..-.|+.|-.-|.+.+|...+.+.-... ..|...|..+.|+++|..++|+..=|.|.+|.
T Consensus 60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~----------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV----------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred eehhhhccChHHHHHhhccccceeEEEecCCceeeeec----------cCCCCCceeEEecCCCCeEEEcCCCceeEEEE
Confidence 34677999999999999999999999997765433222 23668999999999999999999999999998
Q ss_pred cCC
Q 000055 2300 LEV 2302 (2548)
Q Consensus 2300 l~t 2302 (2548)
...
T Consensus 130 ~d~ 132 (1416)
T KOG3617|consen 130 YDV 132 (1416)
T ss_pred eee
Confidence 763
No 330
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.20 E-value=13 Score=48.60 Aligned_cols=115 Identities=16% Similarity=0.152 Sum_probs=69.5
Q ss_pred EEEEEEcCCCCEEEEE-ECCC----eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC---
Q 000055 2222 TRAFSSHPLRPFFLVG-SSNT----HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG--- 2293 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASG-S~DG----sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG--- 2293 (2548)
+..++++|+|+++|.+ +..| .++++|+.+|+.+...-. . ..-..+.|.++++.|+....|.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--~---------~~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--N---------PKFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--E---------EESEEEEECTTSSEEEEEECSTTTS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--c---------cccceEEEeCCCCEEEEEEeCcccc
Confidence 4578889999999854 3333 599999999977654211 0 1123499999988876665443
Q ss_pred --------cEEEEEcCCCcccccccCccceeccCCcccE---E-EEcCCCCEEEEEeccCCC-CeEEEEECCC
Q 000055 2294 --------TVCTWQLEVGGRSNVRPMESCLCFSSHAMDV---S-YITSSGSVIAAAGHSSNG-INVVVWDTLA 2353 (2548)
Q Consensus 2294 --------tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V---~-afSpdGslLATgG~SS~D-GtVrIWDl~t 2353 (2548)
.|..|++.++.... ...+......+ . ..+.++++++....+..+ ..+.+.|+..
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d------~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSED------ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred cccCCCCcEEEEEECCCChHhC------eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 36777777654221 12233333322 2 378899987764433344 5688888865
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.75 E-value=1.3 Score=62.47 Aligned_cols=168 Identities=11% Similarity=0.068 Sum_probs=100.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEc----CC-------------------CceeEEEeccCCCCC-CCC-C-------
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEF----GK-------------------DKATATYGVLPAANV-PPP-Y------- 2269 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl----~t-------------------g~~l~t~~~l~ghs~-~~~-~------- 2269 (2548)
|.+++|+||+.+++..+.++++.+-+. -. |+.-..|++-.+... +.. .
T Consensus 112 I~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~ 191 (1265)
T KOG1920|consen 112 ISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQ 191 (1265)
T ss_pred eEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccc
Confidence 589999999999999888888766432 11 111222322111000 000 0
Q ss_pred --CCCCeEEEEEccCCCEEEEE-----eCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC
Q 000055 2270 --ALASISALQFDHYGHRFASA-----ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN 2342 (2548)
Q Consensus 2270 --H~~~VtsVaFSPdG~~LaSG-----S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~ 2342 (2548)
-.+.=+.|.|--||.++|+. ..-+.|++||-+ |...... . .........+|-|.|.++++-.....
T Consensus 192 ~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~s---e---~~~~l~~~LsWkPsgs~iA~iq~~~s 264 (1265)
T KOG1920|consen 192 IEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTS---E---PVEGLQHSLSWKPSGSLIAAIQCKTS 264 (1265)
T ss_pred hhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhccc---C---cccccccceeecCCCCeEeeeeecCC
Confidence 00122458999999999883 223799999988 4321110 0 11122334568899999999876657
Q ss_pred CCeEEEEECCCC-CCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEE---EeCCCcEEEEeCC
Q 000055 2343 GINVVVWDTLAP-PTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVT---GGKGGDVGIHDFR 2403 (2548)
Q Consensus 2343 DGtVrIWDl~t~-~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVS---GS~DGtVrLWDLR 2403 (2548)
|+.|.++.-+.- .+.....+......|..++|+.+ +..|++ ......|++|-+.
T Consensus 265 d~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~-------sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 265 DSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN-------SDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred CCcEEEEecCCccccccccCCcccccchheeeecCC-------CCceeeeecccccceEEEEEec
Confidence 778999986421 01122223333445999999988 667776 5555569999853
No 332
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.57 E-value=0.017 Score=75.19 Aligned_cols=203 Identities=16% Similarity=0.198 Sum_probs=122.5
Q ss_pred CCeEEEEEccC--CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEec-cCCCCe
Q 000055 2272 ASISALQFDHY--GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGH-SSNGIN 2345 (2548)
Q Consensus 2272 ~~VtsVaFSPd--G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~-SS~DGt 2345 (2548)
..+.|+++.-+ ...++.|..+|.|.+-.++..... .....+++...+.+ |++ |.+.+|+|-. ...|..
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc------cceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 45667776553 346888999999999888744211 11234555555553 444 4456666421 124667
Q ss_pred EEEEECCCCCCCc--ceeeec-cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCC
Q 000055 2346 VVVWDTLAPPTSS--RASITC-HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS 2422 (2548)
Q Consensus 2346 VrIWDl~t~~~k~--v~sl~g-Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~ 2422 (2548)
+.|||+.+.-..+ -..|.+ -..+..+++|..+ .+++.+|...+.+.++|+|+ .+.+..
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd-------~klvlaGm~sr~~~ifdlRq----s~~~~~-------- 191 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD-------TKLVLAGMTSRSVHIFDLRQ----SLDSVS-------- 191 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccC-------cchhhcccccchhhhhhhhh----hhhhhh--------
Confidence 9999987531111 112222 4456778888854 67899999999999999884 111110
Q ss_pred ccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEEC-CC-CcEEEEeccccccc
Q 000055 2423 INTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDA-KA-AQLVYHWSKLHERH 2499 (2548)
Q Consensus 2423 ~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl-~T-gell~tL~~~Hs~h 2499 (2548)
.-.+..|..+..+| .+.|+++-. ||.|.+||. +. ..++..+ .|..
T Consensus 192 ----------------------------svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i--~~~~- 239 (783)
T KOG1008|consen 192 ----------------------------SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQII--LRNE- 239 (783)
T ss_pred ----------------------------hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHH--hhCC-
Confidence 11233556788888 788887765 999999993 22 2222222 1111
Q ss_pred ccccCcccCCCCceeecEEEEEEcCCe---EEEEECC-CcEEEEECC
Q 000055 2500 TFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGD-GSVKLIQLE 2542 (2548)
Q Consensus 2500 sfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~D-GtIrIWDL~ 2542 (2548)
+.....+..++|.|.. ++++..| ++|+.+++.
T Consensus 240 -----------N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 240 -----------NKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -----------CCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 1111235677898866 7777765 689998875
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.53 E-value=4.4 Score=55.05 Aligned_cols=280 Identities=11% Similarity=0.066 Sum_probs=145.7
Q ss_pred EEEEECCCeEEEEEcCCCceeEEEeccCCCCCCC------------CCC------CCCeEEEEEc-----cCCCEEEEEe
Q 000055 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP------------PYA------LASISALQFD-----HYGHRFASAA 2290 (2548)
Q Consensus 2234 LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~------------~~H------~~~VtsVaFS-----PdG~~LaSGS 2290 (2548)
+.+|+..|.|+|+-+.+++.+..+..+....... .++ .+......+| -||++++.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 4489999999999999988877766553222100 000 0011111111 1577777765
Q ss_pred C-CCcEEEEEcCCCcccccccCcccee-----cc--CCcccEEE-------EcCCCCEEEEEeccCCCCeEEEEECCCCC
Q 000055 2291 L-DGTVCTWQLEVGGRSNVRPMESCLC-----FS--SHAMDVSY-------ITSSGSVIAAAGHSSNGINVVVWDTLAPP 2355 (2548)
Q Consensus 2291 ~-DGtVrVWDl~tgk~i~i~p~~s~~t-----~~--gH~~~V~a-------fSpdGslLATgG~SS~DGtVrIWDl~t~~ 2355 (2548)
. +..|...+++.-++..+......+. +. .++..|.+ +++||+.+.... -..+.+.+.|..+
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~--ey~~~vSvID~et-- 224 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPK--KYRSLFTAVDAET-- 224 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeeccc--ceeEEEEEEECcc--
Confidence 4 4566666665444332221111111 11 23444543 567887665432 2567788888865
Q ss_pred CCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC----CCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000055 2356 TSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGK----GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2356 ~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~----DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
.+....+.- .+....+.++++ +.++.+.+. .+++..-|. .....+..+.. .......
T Consensus 225 meV~~qV~V-dgnpd~v~~spd-------Gk~afvTsyNsE~G~tl~em~a---~e~d~~vvfni--------~~iea~v 285 (635)
T PRK02888 225 MEVAWQVMV-DGNLDNVDTDYD-------GKYAFSTCYNSEEGVTLAEMMA---AERDWVVVFNI--------ARIEEAV 285 (635)
T ss_pred ceEEEEEEe-CCCcccceECCC-------CCEEEEeccCcccCcceeeecc---ccCceEEEEch--------HHHHHhh
Confidence 333333322 223455666776 566666542 223333331 11111111100 0112345
Q ss_pred CCCCCccCCCCCceEEEccc----C--------CCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEecccccc
Q 000055 2432 QTGSGSKPGDQNGMLWYIPK----A--------HLGSVTRISTVPNTSLFLTGSK-DGDVKLWDAKAAQLVYHWSKLHER 2498 (2548)
Q Consensus 2432 pdGk~v~s~D~sv~Iwdi~~----g--------H~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~Tgell~tL~~~Hs~ 2498 (2548)
++|++....++.+.+.|..+ + -......+.++|||+++++++. +.+|.|.|+.+.+....=+ ...+
T Consensus 286 kdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~-~~~~ 364 (635)
T PRK02888 286 KAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK-IKPR 364 (635)
T ss_pred hCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc-CCcc
Confidence 56665333455677777544 1 1224467899999999887765 8999999998755311000 0000
Q ss_pred cccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000055 2499 HTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2499 hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
........-|-+ -...+|+++| +.|--.|..|..|+++.
T Consensus 365 ~~vvaevevGlG------PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 365 DAVVAEPELGLG------PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEEeeccCCC------cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 000000011221 1234799998 77889999999999875
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.49 E-value=3.4 Score=54.75 Aligned_cols=138 Identities=12% Similarity=0.126 Sum_probs=79.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
...++++|+|+++++ +.||.-.|+.....+.... +.-....|.+ .+.+|+-..+++|.++.--
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~---------------G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF---------------GSGLSFVWSS-RNRYAVLESSSTIKIYKNF 97 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE---------------EE-SEEEE-T-SSEEEEE-TTS-EEEEETT
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc---------------CceeEEEEec-CccEEEEECCCeEEEEEcC
Confidence 578899999999998 6677888888444333222 4456788988 4558888878999996322
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
..... ... ........+.. |.+|...+ ++.|.+||+.+ ++.+..+.. .+|..|.|+++
T Consensus 98 ~~~~~--k~i----~~~~~~~~If~----G~LL~~~~----~~~i~~yDw~~--~~~i~~i~v--~~vk~V~Ws~~---- 155 (443)
T PF04053_consen 98 KNEVV--KSI----KLPFSVEKIFG----GNLLGVKS----SDFICFYDWET--GKLIRRIDV--SAVKYVIWSDD---- 155 (443)
T ss_dssp EE-TT-----------SS-EEEEE-----SSSEEEEE----TTEEEEE-TTT----EEEEESS---E-EEEEE-TT----
T ss_pred ccccc--eEE----cCCcccceEEc----CcEEEEEC----CCCEEEEEhhH--cceeeEEec--CCCcEEEEECC----
Confidence 22110 000 01112233332 88888764 55899999986 566777653 24899999988
Q ss_pred CCCCCEEEEEeCCCcEEEEeC
Q 000055 2382 GSVSPLIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDL 2402 (2548)
+.+++-.+.+ ++.+++.
T Consensus 156 ---g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 156 ---GELVALVTKD-SIYILKY 172 (443)
T ss_dssp ---SSEEEEE-S--SEEEEEE
T ss_pred ---CCEEEEEeCC-eEEEEEe
Confidence 6788877744 7778773
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.16 E-value=7.6 Score=49.94 Aligned_cols=99 Identities=12% Similarity=0.159 Sum_probs=60.0
Q ss_pred cCCCCEEEEE---------ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000055 2228 HPLRPFFLVG---------SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2228 SPdG~~LASG---------S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
|||+++++.. +..+...|+|+.+++....... ...+....|+|+|+.++... ++.|.++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-----------~~~~~~~~~sP~g~~~~~v~-~~nly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-----------PPKLQDAKWSPDGKYIAFVR-DNNLYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-----------ETTBSEEEE-SSSTEEEEEE-TTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-----------ccccccceeecCCCeeEEEe-cCceEEE
Confidence 5788877753 3446789999998764433211 26788999999999988875 5789999
Q ss_pred EcCCCcccccccCccceeccCC-----------cccEEEEcCCCCEEEEEe
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSH-----------AMDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH-----------~~~V~afSpdGslLATgG 2338 (2548)
+..++....+........+.|- .....+|+|||+.||..-
T Consensus 69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp SSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 8876643322111111111111 123346999999988864
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.03 E-value=4.4 Score=53.07 Aligned_cols=229 Identities=15% Similarity=0.133 Sum_probs=109.9
Q ss_pred eEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeE-------------------------EEeccCCCCCC--------
Q 000055 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATA-------------------------TYGVLPAANVP-------- 2266 (2548)
Q Consensus 2220 V~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~-------------------------t~~~l~ghs~~-------- 2266 (2548)
+.|..++|.++..-|++|...|.|.||.+...+... .+.......++
T Consensus 2 ~~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 2 VSVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp --EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred ceEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 457888999999999999999999999987432221 00000000000
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccC-CcccEE-------EEcCCC---CEEE
Q 000055 2267 PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS-HAMDVS-------YITSSG---SVIA 2335 (2548)
Q Consensus 2267 ~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~g-H~~~V~-------afSpdG---slLA 2335 (2548)
.....+.|++++.+ |--+++.|..+|.+.|.|++....+....... ..... ....+. .+..|+ -.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 01125889999997 55579999999999999997664332111111 00111 111222 133333 2444
Q ss_pred EEeccCCCCeEEEEECCC-CCCCcc----eeeeccCCCeEEEEEccCCCCC--------------CCCCCEEEEEeCCCc
Q 000055 2336 AAGHSSNGINVVVWDTLA-PPTSSR----ASITCHEGGARSISVFDNDLGS--------------GSVSPLIVTGGKGGD 2396 (2548)
Q Consensus 2336 TgG~SS~DGtVrIWDl~t-~~~k~v----~sl~gHs~~VtSLafsP~dlg~--------------gs~g~lLVSGS~DGt 2396 (2548)
+|. +.|.+.+|.+.- ..+... .....+.+.|..+.....+.|. +..-+.++....+..
T Consensus 160 vGT---n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ 236 (395)
T PF08596_consen 160 VGT---NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD 236 (395)
T ss_dssp EEE---TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred EEe---CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence 543 779999998752 112111 1112455666666533221010 000112333344666
Q ss_pred EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEE-----eCCCCEEEE
Q 000055 2397 VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIST-----VPNTSLFLT 2471 (2548)
Q Consensus 2397 VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLaf-----SPdG~~LaS 2471 (2548)
+|++. ..+.+..... | ...-.+..+.+ ...+..|++
T Consensus 237 irv~~---~~~~k~~~K~--------------------------------~----~~~~~~~~~~vv~~~~~~~~~~Lv~ 277 (395)
T PF08596_consen 237 IRVFK---PPKSKGAHKS--------------------------------F----DDPFLCSSASVVPTISRNGGYCLVC 277 (395)
T ss_dssp EEEE----TT---EEEEE-------------------------------------SS-EEEEEEEEEEEE-EEEEEEEEE
T ss_pred eEEEe---CCCCccccee--------------------------------e----ccccccceEEEEeecccCCceEEEE
Confidence 77777 3333332221 0 01112223333 235678888
Q ss_pred EeCCCcEEEEECCCCcEEEEe
Q 000055 2472 GSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2472 GS~DGtIrIWDl~Tgell~tL 2492 (2548)
-..+|.|+++.+..-+.+..+
T Consensus 278 l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 278 LFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp EETTSEEEEEETTT--EEEEE
T ss_pred EECCCcEEEEECCCchHhhcc
Confidence 899999999999988888766
No 337
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=93.87 E-value=0.12 Score=41.14 Aligned_cols=32 Identities=41% Similarity=0.801 Sum_probs=29.9
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000055 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWD 2482 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWD 2482 (2548)
..|...|.++.|+|++.++++++.||.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 57888999999999999999999999999996
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.68 E-value=9.6 Score=46.98 Aligned_cols=212 Identities=12% Similarity=0.103 Sum_probs=103.4
Q ss_pred CCeEEEEEccCCC-EEEEEeCCCcEEEEEcCCCcccccccCccceeccCCc--ccEEEEcCCCCEEEEEeccCCCCeEEE
Q 000055 2272 ASISALQFDHYGH-RFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHA--MDVSYITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~-~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~--~~V~afSpdGslLATgG~SS~DGtVrI 2348 (2548)
..++.++|+|+.+ ++++....+.|...+.+ |+.+... .+.+.. ..|. +..++.++++.. .++.+.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i------~l~g~~D~EgI~-y~g~~~~vl~~E---r~~~L~~ 90 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI------PLDGFGDYEGIT-YLGNGRYVLSEE---RDQRLYI 90 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE------E-SS-SSEEEEE-E-STTEEEEEET---TTTEEEE
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE------eCCCCCCceeEE-EECCCEEEEEEc---CCCcEEE
Confidence 5699999999755 66666777888777764 4433222 133322 2343 444566666542 5888998
Q ss_pred EECCCCCCCc-c---eeee-----ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCC
Q 000055 2349 WDTLAPPTSS-R---ASIT-----CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRG 2419 (2548)
Q Consensus 2349 WDl~t~~~k~-v---~sl~-----gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~ 2419 (2548)
+++....... . ..+. .++.++-.++|.+. ++.|+.+-...-..++.++....+..+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~-------~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~--- 160 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPK-------TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD--- 160 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETT-------TTEEEEEEESSSEEEEEEESTT-SS--EEEE----
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCC-------CCEEEEEeCCCChhhEEEccccCccceeeccc---
Confidence 8884321111 1 1121 35567899999998 44555566666666776432111111111000
Q ss_pred CCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecccccc
Q 000055 2420 GSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHER 2498 (2548)
Q Consensus 2420 ~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~ 2498 (2548)
.. |.-.......+.+++++|.. .+++-...+..|.++| .+|+.+..+.-..
T Consensus 161 --------~~-----------------~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~-- 212 (248)
T PF06977_consen 161 --------QD-----------------LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDR-- 212 (248)
T ss_dssp --------HH-----------------HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-ST--
T ss_pred --------cc-----------------cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCC--
Confidence 00 00001234457899999964 5566666688899999 6788887663111
Q ss_pred cccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEE
Q 000055 2499 HTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLI 2539 (2548)
Q Consensus 2499 hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIW 2539 (2548)
.+.|-...+.. .-.|+++++| |...+.-+...++
T Consensus 213 ------g~~gl~~~~~Q-pEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 213 ------GFHGLSKDIPQ-PEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ------TGGG-SS---S-EEEEEE-TT--EEEEETTTEEEEE
T ss_pred ------cccCcccccCC-ccEEEECCCCCEEEEcCCceEEEe
Confidence 11111122322 3567999999 7777776655544
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.54 E-value=1 Score=60.41 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=58.1
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000055 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.....|++..++|.|+..|.|.++.++.+......-.-+.+ ..|...|++++|++++..+++|...|+|.+-.++.
T Consensus 80 ~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d----~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 80 CVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD----KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred EEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc----ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 44555688889999999999999998874332222111111 22678999999999999999999999999988876
No 340
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.38 E-value=2.7 Score=53.03 Aligned_cols=183 Identities=15% Similarity=0.141 Sum_probs=103.4
Q ss_pred CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEE---EEccC----CCEEEEEeC----------CCcEEEEEcCCC
Q 000055 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISAL---QFDHY----GHRFASAAL----------DGTVCTWQLEVG 2303 (2548)
Q Consensus 2241 GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsV---aFSPd----G~~LaSGS~----------DGtVrVWDl~tg 2303 (2548)
..|++.|..+.+.+.++...+. ..+.++ .+..+ ..++++|.. .|.|.++++...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~---------E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~ 72 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN---------EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES 72 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT---------EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS
T ss_pred cEEEEEeCCCCeEEEEEECCCC---------ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcc
Confidence 3688899888887777654332 334544 44432 467777643 288999999874
Q ss_pred cccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc-eeeeccCCCeEEEEEccCCCCCC
Q 000055 2304 GRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR-ASITCHEGGARSISVFDNDLGSG 2382 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v-~sl~gHs~~VtSLafsP~dlg~g 2382 (2548)
.... ...... .-....+.|.++.+-+..++++ .++.|.+|++.... +.. .........+.++....+
T Consensus 73 ~~~~-~~l~~i-~~~~~~g~V~ai~~~~~~lv~~----~g~~l~v~~l~~~~-~l~~~~~~~~~~~i~sl~~~~~----- 140 (321)
T PF03178_consen 73 PENN-FKLKLI-HSTEVKGPVTAICSFNGRLVVA----VGNKLYVYDLDNSK-TLLKKAFYDSPFYITSLSVFKN----- 140 (321)
T ss_dssp ------EEEEE-EEEEESS-EEEEEEETTEEEEE----ETTEEEEEEEETTS-SEEEEEEE-BSSSEEEEEEETT-----
T ss_pred cccc-eEEEEE-EEEeecCcceEhhhhCCEEEEe----ecCEEEEEEccCcc-cchhhheecceEEEEEEecccc-----
Confidence 1000 000000 0112234455543323345554 36899999998632 121 111122336777776544
Q ss_pred CCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEE
Q 000055 2383 SVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIST 2462 (2548)
Q Consensus 2383 s~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLaf 2462 (2548)
+++.|...+.|.++.++. .++.+..+. .......++++.|
T Consensus 141 ----~I~vgD~~~sv~~~~~~~--~~~~l~~va----------------------------------~d~~~~~v~~~~~ 180 (321)
T PF03178_consen 141 ----YILVGDAMKSVSLLRYDE--ENNKLILVA----------------------------------RDYQPRWVTAAEF 180 (321)
T ss_dssp ----EEEEEESSSSEEEEEEET--TTE-EEEEE----------------------------------EESS-BEEEEEEE
T ss_pred ----EEEEEEcccCEEEEEEEc--cCCEEEEEE----------------------------------ecCCCccEEEEEE
Confidence 999999989898885321 122222210 0123456889999
Q ss_pred eCCCCEEEEEeCCCcEEEEECC
Q 000055 2463 VPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2463 SPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
-++++.++.+..+|.+.++...
T Consensus 181 l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 181 LVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp E-SSSEEEEEETTSEEEEEEE-
T ss_pred ecCCcEEEEEcCCCeEEEEEEC
Confidence 8777899999999999998875
No 341
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.31 E-value=9.1 Score=50.43 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=32.4
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000055 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.+++..++.||+|+++|.-..+|.+.|.+..-.+.+.++
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF 254 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence 458999999999999999999999999887666666555
No 342
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=93.28 E-value=0.16 Score=40.27 Aligned_cols=38 Identities=13% Similarity=0.308 Sum_probs=32.9
Q ss_pred CcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEe
Q 000055 2357 SSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHD 2401 (2548)
Q Consensus 2357 k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWD 2401 (2548)
++...+..|...|.++.|.+. +..+++++.||.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPD-------GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCC-------CCEEEEecCCCeEEEcC
Confidence 345667788999999999987 57999999999999996
No 343
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.28 E-value=8.9 Score=48.34 Aligned_cols=164 Identities=16% Similarity=0.129 Sum_probs=90.7
Q ss_pred CCccCCeEEEEEEEcCCCCEEEEE-----ECCCeEEEEEcC-CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE
Q 000055 2214 PATVENISTRAFSSHPLRPFFLVG-----SSNTHIYLWEFG-KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA 2287 (2548)
Q Consensus 2214 ~~tl~gV~V~~VsfSPdG~~LASG-----S~DGsVrLWDl~-tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La 2287 (2548)
.+++.+| -.|+|||++|.+. +..|.|-|||.. +-+.+..+.. +. -.-..+.+.|||+.|+
T Consensus 49 gRHFyGH----g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s---~G-------IGPHel~l~pDG~tLv 114 (305)
T PF07433_consen 49 GRHFYGH----GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS---HG-------IGPHELLLMPDGETLV 114 (305)
T ss_pred CCEEecC----EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC---CC-------cChhhEEEcCCCCEEE
Confidence 4567777 4567999999975 567899999998 4444444432 21 2335678999998888
Q ss_pred EEeC-------CC-----------cEEEEEcCCCcccccccCccceec--cCCcccEE--EEcCCCCEEEEEeccCCCC-
Q 000055 2288 SAAL-------DG-----------TVCTWQLEVGGRSNVRPMESCLCF--SSHAMDVS--YITSSGSVIAAAGHSSNGI- 2344 (2548)
Q Consensus 2288 SGS~-------DG-----------tVrVWDl~tgk~i~i~p~~s~~t~--~gH~~~V~--afSpdGslLATgG~SS~DG- 2344 (2548)
++-. .| ++..-|..+|+.+.. ..+ .-|...+. ++..+|..++..- ..|
T Consensus 115 VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q------~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q---~qg~ 185 (305)
T PF07433_consen 115 VANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ------VELPPDLHQLSIRHLAVDGDGTVAFAMQ---YQGD 185 (305)
T ss_pred EEcCCCccCcccCceecChhhcCCceEEEecCCCceeee------eecCccccccceeeEEecCCCcEEEEEe---cCCC
Confidence 7622 12 333334444432211 011 11323332 3455554443331 111
Q ss_pred ------eEEEEECCCCCCCcceee-------eccCCCeEEEEEccCCCCCCCCCCEE-EEEeCCCcEEEEeCCccccCce
Q 000055 2345 ------NVVVWDTLAPPTSSRASI-------TCHEGGARSISVFDNDLGSGSVSPLI-VTGGKGGDVGIHDFRYIATGKT 2410 (2548)
Q Consensus 2345 ------tVrIWDl~t~~~k~v~sl-------~gHs~~VtSLafsP~dlg~gs~g~lL-VSGS~DGtVrLWDLR~l~TGk~ 2410 (2548)
-|-+++.. +....+ ..-.+.+-+|+++++ +..+ +|+=..|.+.+|| ..+++.
T Consensus 186 ~~~~~PLva~~~~g----~~~~~~~~p~~~~~~l~~Y~gSIa~~~~-------g~~ia~tsPrGg~~~~~d---~~tg~~ 251 (305)
T PF07433_consen 186 PGDAPPLVALHRRG----GALRLLPAPEEQWRRLNGYIGSIAADRD-------GRLIAVTSPRGGRVAVWD---AATGRL 251 (305)
T ss_pred CCccCCeEEEEcCC----CcceeccCChHHHHhhCCceEEEEEeCC-------CCEEEEECCCCCEEEEEE---CCCCCE
Confidence 12233321 111111 123467889999888 4555 5555788999999 667777
Q ss_pred eeee
Q 000055 2411 KKHK 2414 (2548)
Q Consensus 2411 l~tl 2414 (2548)
+...
T Consensus 252 ~~~~ 255 (305)
T PF07433_consen 252 LGSV 255 (305)
T ss_pred eecc
Confidence 6554
No 344
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=3.1 Score=52.87 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=61.3
Q ss_pred eccCCcccEE--EEcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe
Q 000055 2316 CFSSHAMDVS--YITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG 2392 (2548)
Q Consensus 2316 t~~gH~~~V~--afSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS 2392 (2548)
.+.++...|. +++|..+ ++..+ |.+..|+|.|+++ ...+..+..| ..+++++|.-++ ..++..|-
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~a---sl~nkiki~dlet--~~~vssy~a~-~~~wSC~wDlde------~h~IYaGl 255 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLA---SLGNKIKIMDLET--SCVVSSYIAY-NQIWSCCWDLDE------RHVIYAGL 255 (463)
T ss_pred cccccchhhhhhccCccccceeeee---ccCceEEEEeccc--ceeeeheecc-CCceeeeeccCC------cceeEEec
Confidence 3556666665 4888777 44454 4899999999987 4566677776 889999999885 77999999
Q ss_pred CCCcEEEEeCCcc
Q 000055 2393 KGGDVGIHDFRYI 2405 (2548)
Q Consensus 2393 ~DGtVrLWDLR~l 2405 (2548)
.+|.|.+||+|+.
T Consensus 256 ~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 256 QNGMVLVYDMRQP 268 (463)
T ss_pred cCceEEEEEccCC
Confidence 9999999999863
No 345
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=0.29 Score=64.53 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=61.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeE-EEEEccCCCEEEEEeCCCcEEEEEc
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS-ALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vt-sVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+..+.|+|..+++|++..+|.|.+..++ .+.+.++.. |...++ +++|.|||+.+|+|-.||+|++.|+
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~----------p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI----------PGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC----------CCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 6889999999999999999999999887 555555421 124455 9999999999999999999999999
Q ss_pred CCCccc
Q 000055 2301 EVGGRS 2306 (2548)
Q Consensus 2301 ~tgk~i 2306 (2548)
+++..+
T Consensus 92 e~~~~l 97 (665)
T KOG4640|consen 92 EKGGRL 97 (665)
T ss_pred cCCCce
Confidence 988643
No 346
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.40 E-value=4.7 Score=56.46 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=85.1
Q ss_pred CCEEEEE-eCCCcEEEEEcCCCcccccccCccceeccCCccc-EEEEcCC--------CCEEEEEeccCCCCeEEEEECC
Q 000055 2283 GHRFASA-ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMD-VSYITSS--------GSVIAAAGHSSNGINVVVWDTL 2352 (2548)
Q Consensus 2283 G~~LaSG-S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~-V~afSpd--------GslLATgG~SS~DGtVrIWDl~ 2352 (2548)
.++|+.- .....|.-.|++.|+.+. .+..+... |..+.|+ .+.++.- .++.+..||.|
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~--------eW~~~~~~~v~~~~p~~K~aqlt~e~tflGl----s~n~lfriDpR 560 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVE--------EWKVHDDIPVVDIAPDSKFAQLTNEQTFLGL----SDNSLFRIDPR 560 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEE--------EeecCCCcceeEecccccccccCCCceEEEE----CCCceEEeccC
Confidence 3444433 345678888888886432 13333322 4444332 2233332 68899999999
Q ss_pred CCCCCccee-ee--ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccc
Q 000055 2353 APPTSSRAS-IT--CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHA 2429 (2548)
Q Consensus 2353 t~~~k~v~s-l~--gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~va 2429 (2548)
....+.+.. .. .......|++-..++ .||+|+.+|.||+|| | .|+.-++.
T Consensus 561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G--------~iavgs~~G~IRLyd-~---~g~~AKT~--------------- 613 (794)
T PF08553_consen 561 LSGNKLVDSQSKQYSSKNNFSCFATTEDG--------YIAVGSNKGDIRLYD-R---LGKRAKTA--------------- 613 (794)
T ss_pred CCCCceeeccccccccCCCceEEEecCCc--------eEEEEeCCCcEEeec-c---cchhhhhc---------------
Confidence 753333321 10 223456677765553 999999999999999 2 12221111
Q ss_pred cCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 000055 2430 DAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDA 2483 (2548)
Q Consensus 2430 fSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl 2483 (2548)
+.+-..+|..|..+.||+++++.+. ..+.+++.
T Consensus 614 --------------------lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 614 --------------------LPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred --------------------CCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 1456679999999999999887764 45666664
No 347
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.21 E-value=10 Score=46.74 Aligned_cols=233 Identities=15% Similarity=0.191 Sum_probs=125.9
Q ss_pred eEEEEEccC-CCEEEEEeCCCc-EEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEec--cCCCCeEEEE
Q 000055 2274 ISALQFDHY-GHRFASAALDGT-VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGH--SSNGINVVVW 2349 (2548)
Q Consensus 2274 VtsVaFSPd-G~~LaSGS~DGt-VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~--SS~DGtVrIW 2349 (2548)
-..|+|+|. .+-++.+-.-|+ ..++|.++.+...........-+.+|. .|++||.++...-. ...-|.|-||
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG----vfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG----VFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc----ccCCCCcEEEeecCCCCCCCceEEEE
Confidence 345677774 445556655564 346888776544333222222344444 58999999887531 1134679999
Q ss_pred ECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEE-eCCc----------------cccCceee
Q 000055 2350 DTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIH-DFRY----------------IATGKTKK 2412 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLW-DLR~----------------l~TGk~l~ 2412 (2548)
|.+. ..+.+..+..|.-+...+.+.++ |..++.+ +|-|... |... ..+|..+.
T Consensus 146 d~r~-~fqrvgE~~t~GiGpHev~lm~D-------Grtlvva--nGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 146 DARE-GFQRVGEFSTHGIGPHEVTLMAD-------GRTLVVA--NGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred eccc-ccceecccccCCcCcceeEEecC-------CcEEEEe--CCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 9984 35567788888888889999988 6666654 3445554 3210 12222222
Q ss_pred eecCCCCCCCccccccccCCCCCCccCCC------C------------CceEEEccc----CCCCCEEEEEEeCCCCEEE
Q 000055 2413 HKHSDRGGSSINTCAHADAQTGSGSKPGD------Q------------NGMLWYIPK----AHLGSVTRISTVPNTSLFL 2470 (2548)
Q Consensus 2413 tl~~~~~~s~~~~~~vafSpdGk~v~s~D------~------------sv~Iwdi~~----gH~~~VtsLafSPdG~~La 2470 (2548)
....+.......+..++..+||....... . .....++.+ +....|-+++.+.+..+++
T Consensus 216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~ 295 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVA 295 (366)
T ss_pred hccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEE
Confidence 21111111112223334444443311100 0 011111111 1234566787776555555
Q ss_pred EEeC-CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEECCCcEEEEE
Q 000055 2471 TGSK-DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2471 SGS~-DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWD 2540 (2548)
..+- .+...+||..+|..+..-. +.. +..++....|++..+.+|.+.++.
T Consensus 296 lTSP~GN~~vi~da~tG~vv~~a~------------l~d--------aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 296 LTSPRGNRAVIWDAATGAVVSEAA------------LPD--------AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EecCCCCeEEEEEcCCCcEEeccc------------ccc--------cccceeccCceEEecCCceEEecc
Confidence 5554 4467789999999886331 011 122345556688888889888664
No 348
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.12 E-value=30 Score=46.65 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=44.5
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeE--EEEEccCCCEEEEEeCCCcEEEEEcCCCccc
Q 000055 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS--ALQFDHYGHRFASAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vt--sVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i 2306 (2548)
+..+..++.++.|+-.|..+|+.+-.+....... .+...+. .+... ++..++.++.||.|..+|.++|+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~----~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~ 133 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPAD----RGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQV 133 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCcc----ccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEe
Confidence 4456677888999999999998776654311100 0000010 11111 2367888899999999999998754
No 349
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.11 E-value=28 Score=47.02 Aligned_cols=29 Identities=21% Similarity=0.508 Sum_probs=25.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000055 2465 NTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.+..++.|+.||.|+.+|.++|+.+.+++
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 56788899999999999999999998773
No 350
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.91 E-value=53 Score=41.57 Aligned_cols=239 Identities=17% Similarity=0.212 Sum_probs=127.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCC------Cc-eeEEEeccCCCCCCCCCCCCCeEEEEEccCCC----------
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGK------DK-ATATYGVLPAANVPPPYALASISALQFDHYGH---------- 2284 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~t------g~-~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~---------- 2284 (2548)
.+.++++|.+.+-++...-+...+||... .+ .+.++-..++ .......+.+.|+....
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~-----~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP-----LAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC-----CCCCCCccEEEEeCCCceEEcCCCccc
Confidence 58899999999999888889999999861 11 1222211011 11235678888875322
Q ss_pred --EEEEEeCCCcEEEEEcCCCcccccccCccceecc-CCcccEE---EEc--CCCCEEEEEeccCCCCeEEEEECCCCCC
Q 000055 2285 --RFASAALDGTVCTWQLEVGGRSNVRPMESCLCFS-SHAMDVS---YIT--SSGSVIAAAGHSSNGINVVVWDTLAPPT 2356 (2548)
Q Consensus 2285 --~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~-gH~~~V~---afS--pdGslLATgG~SS~DGtVrIWDl~t~~~ 2356 (2548)
.++.++.||+|.-|.-..+....+ .....+. .....|. ++. ..+.+|..+.. .+++|.++|-.-..-
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~---~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF--~~g~IDVFd~~f~~~ 174 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMT---RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF--RQGRIDVFKGSFRPP 174 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCccccc---ccEEEEccCCCcceeeeeEEeecCCCceEEEecc--CCCceEEecCccccc
Confidence 367889999999998643321000 0011121 1123343 232 34567777654 689999998653100
Q ss_pred Ccceeeecc-----C--------CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCc
Q 000055 2357 SSRASITCH-----E--------GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSI 2423 (2548)
Q Consensus 2357 k~v~sl~gH-----s--------~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~ 2423 (2548)
..-..+... - +.-.-|.|...+ +....=+.|..-|.|.+||. .|+.++++..
T Consensus 175 ~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd----~~~~d~v~G~G~G~VdvFd~----~G~l~~r~as------- 239 (336)
T TIGR03118 175 PLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQD----ADRNDEVAGAGLGYVNVFTL----NGQLLRRVAS------- 239 (336)
T ss_pred cCCCCccCCCCCCCCCCcceEEECCeEEEEEEecC----CcccccccCCCcceEEEEcC----CCcEEEEecc-------
Confidence 000011100 0 000111111111 00112223334467777774 2455554410
Q ss_pred cccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC------CCCEEEEEeCCCcEEEEECCCCcEEEEeccccc
Q 000055 2424 NTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP------NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE 2497 (2548)
Q Consensus 2424 ~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP------dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs 2497 (2548)
.+.-..-+.|+..| .|.+|+---.||+|.++|..+|+.+..+...
T Consensus 240 ---------------------------~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~-- 290 (336)
T TIGR03118 240 ---------------------------SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP-- 290 (336)
T ss_pred ---------------------------CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCC--
Confidence 22334455666655 4677776667999999999999988877311
Q ss_pred ccccccCcccCCCCceeecEEEEEEcC
Q 000055 2498 RHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
.|+ ..+-...+.|+|..
T Consensus 291 ---------~G~-pi~i~GLWgL~fGn 307 (336)
T TIGR03118 291 ---------DNH-PVKVDGLWSLTFGN 307 (336)
T ss_pred ---------CCC-eEEecCeEEeeeCC
Confidence 122 12234567888866
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=90.68 E-value=19 Score=47.31 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=70.3
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccc--c-ccC--------------------------------ccceec
Q 000055 2273 SISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN--V-RPM--------------------------------ESCLCF 2317 (2548)
Q Consensus 2273 ~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~--i-~p~--------------------------------~s~~t~ 2317 (2548)
.|+.|.|.++...|++|...|.|.+|.+...+... . .+. .+..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48999999999999999999999999876442211 0 000 000001
Q ss_pred cCCcccEEEEc-CCCCEEEEEeccCCCCeEEEEECCCCCCCccee--eec------cCCCeEEEEEccCCCCC-CCCCCE
Q 000055 2318 SSHAMDVSYIT-SSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS--ITC------HEGGARSISVFDNDLGS-GSVSPL 2387 (2548)
Q Consensus 2318 ~gH~~~V~afS-pdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s--l~g------Hs~~VtSLafsP~dlg~-gs~g~l 2387 (2548)
....+.|.++. .|=-++|.|. .+|.+.|.|+|.+ ..+.. +.. ....|+++.|.--.++. +..+..
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy---~~G~l~viD~RGP--avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGY---ESGSLVVIDLRGP--AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEE---TTSEEEEEETTTT--EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEe---cCCcEEEEECCCC--eEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 11234454421 2334666664 8999999999853 32222 111 23468888886332111 112458
Q ss_pred EEEEeCCCcEEEEeC
Q 000055 2388 IVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2388 LVSGS~DGtVrLWDL 2402 (2548)
+++|...|.+.+|.+
T Consensus 158 L~vGTn~G~v~~fkI 172 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKI 172 (395)
T ss_dssp EEEEETTSEEEEEEE
T ss_pred EEEEeCCCCEEEEEE
Confidence 899999999999986
No 352
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.41 E-value=0.71 Score=53.45 Aligned_cols=81 Identities=21% Similarity=0.463 Sum_probs=53.3
Q ss_pred eEEeecCCCCcccceeeecCCeEEEE---ecC-------CCCC---CCceeEEEEEEEEe--------------------
Q 000055 98 TSISWSPETPSIGQLAAASENCIFVF---AHD-------SASS---KGSFCWSQNAILVQ-------------------- 144 (2548)
Q Consensus 98 ~~v~~s~~~~~~G~iAa~~~n~v~if---~~~-------~~~~---~~~~~W~~~~~~~~-------------------- 144 (2548)
.||+||.+ |+||++.|+.|.|+ .|. .... .....|..+-.-..
T Consensus 8 ~~l~WS~D----g~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 83 (173)
T PF12657_consen 8 NALAWSED----GQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEI 83 (173)
T ss_pred cCeeECCC----CCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccc
Confidence 58999999 99999999999999 553 0000 01233322221111
Q ss_pred -cceEEEeeecCCCCe--------eEEecceEEeeccCCCcceEEEEe
Q 000055 145 -GTKVEAIEWTGSGDG--------IVAGGMETVLWKKKNTLWEIAWKF 183 (2548)
Q Consensus 145 -~~~v~~l~W~~~G~~--------ll~~g~~~~lw~~~~~~W~~~W~~ 183 (2548)
...|.+++|+|.|.. +||....|-||...... .--|..
T Consensus 84 s~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~-~~~W~~ 130 (173)
T PF12657_consen 84 SSSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNP-QGEWNR 130 (173)
T ss_pred ccccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCc-cccEee
Confidence 138999999998762 45888899999988543 444443
No 353
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=90.14 E-value=5.9 Score=54.30 Aligned_cols=147 Identities=16% Similarity=0.241 Sum_probs=79.4
Q ss_pred CCCEEEEEECC------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC-----cEEEE
Q 000055 2230 LRPFFLVGSSN------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-----TVCTW 2298 (2548)
Q Consensus 2230 dG~~LASGS~D------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG-----tVrVW 2298 (2548)
+|..+++||.| .++..||..+++-.. ...... ..+...+.. -+|...++||.|| +|-.|
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~-----~R~~~~v~~----l~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNT-----KRSDFGVAV----LDGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccC-----ccccceeEE----ECCEEEEEeccccccccccEEEe
Confidence 45778889888 356778877766322 211111 111111211 2688899999997 57778
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC---CeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG---INVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D---GtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
|..+.+-....+. ......+....-+|.+.++||..... ..|..||..+.....+..+..-..... ++..
T Consensus 402 Dp~~~~W~~va~m------~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~ 474 (571)
T KOG4441|consen 402 DPVTNKWTPVAPM------LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL 474 (571)
T ss_pred cCCCCcccccCCC------CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE
Confidence 8776643222211 11111111223478888888743222 467889988755555555543222222 3322
Q ss_pred cCCCCCCCCCCEEEEEeCCCc-----EEEEe
Q 000055 2376 DNDLGSGSVSPLIVTGGKGGD-----VGIHD 2401 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGt-----VrLWD 2401 (2548)
. +.+.+.||.||. |..+|
T Consensus 475 ~--------~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 475 N--------GKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred C--------CEEEEECCccCCCccceEEEEc
Confidence 2 448888888872 55565
No 354
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=90.10 E-value=5.8 Score=55.63 Aligned_cols=153 Identities=15% Similarity=0.148 Sum_probs=91.6
Q ss_pred CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCC-eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccC
Q 000055 2330 SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGG-ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATG 2408 (2548)
Q Consensus 2330 dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~-VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TG 2408 (2548)
+.++|+.-. .+...|+-.|+.. ++.+..+..|... |..++ |+.-+.-........|-.+..+..||.|. ...
T Consensus 492 d~~mil~~~--~~~~~ly~mDLe~--GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~-~~~ 564 (794)
T PF08553_consen 492 DRNMILLDP--NNPNKLYKMDLER--GKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRL-SGN 564 (794)
T ss_pred ccceEeecC--CCCCceEEEecCC--CcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCC-CCC
Confidence 344554432 2457788888876 7888888887754 55554 43100001134667788899999999883 332
Q ss_pred ceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcE
Q 000055 2409 KTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQL 2488 (2548)
Q Consensus 2409 k~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgel 2488 (2548)
+.+... .+. -.......|++.+.+| +||.|+.+|.||+|| +.|..
T Consensus 565 k~v~~~-----------------------------~k~----Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~ 609 (794)
T PF08553_consen 565 KLVDSQ-----------------------------SKQ----YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKR 609 (794)
T ss_pred ceeecc-----------------------------ccc----cccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchh
Confidence 222111 000 1123456778777666 778999999999999 34433
Q ss_pred EEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEEC
Q 000055 2489 VYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2489 l~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL 2541 (2548)
-++. +.|-+. +|..|..+.|| -+-|..+..+-+++.
T Consensus 610 AKT~-------------lp~lG~----pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 610 AKTA-------------LPGLGD----PIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred hhhc-------------CCCCCC----CeeEEEecCCCcEEEEeecceEEEEEE
Confidence 2222 456564 45677999999 333333456666665
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=89.72 E-value=24 Score=43.62 Aligned_cols=170 Identities=9% Similarity=0.047 Sum_probs=92.7
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000055 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+..++|+|+.. ++++....+.|...+. +|+.+..+.. .+ .+..-.|++..++.++++--.++.+.++++
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l-~g--------~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPL-DG--------FGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE--SS---------SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeC-CC--------CCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 68999999755 5666788888888886 4777777643 21 256788899888877777667899999998
Q ss_pred CCCcc-cccccCccce-ecc-CCcc--cEEEEcCCCCEEEEEeccCCCCeEEEEECCC--CCCCc-ceee------eccC
Q 000055 2301 EVGGR-SNVRPMESCL-CFS-SHAM--DVSYITSSGSVIAAAGHSSNGINVVVWDTLA--PPTSS-RASI------TCHE 2366 (2548)
Q Consensus 2301 ~tgk~-i~i~p~~s~~-t~~-gH~~--~V~afSpdGslLATgG~SS~DGtVrIWDl~t--~~~k~-v~sl------~gHs 2366 (2548)
..... .......... .+. .+.. .-.++++.++.++.+- ...-..++.+.. ..... +... ....
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeecccccccccccee
Confidence 54321 1111000000 011 1222 2246888777666653 444445555432 11111 1111 1234
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000055 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
..+.++.++|.. +.+++.......|-.+|. +|+.+...
T Consensus 171 ~d~S~l~~~p~t------~~lliLS~es~~l~~~d~----~G~~~~~~ 208 (248)
T PF06977_consen 171 RDLSGLSYDPRT------GHLLILSDESRLLLELDR----QGRVVSSL 208 (248)
T ss_dssp S---EEEEETTT------TEEEEEETTTTEEEEE-T----T--EEEEE
T ss_pred ccccceEEcCCC------CeEEEEECCCCeEEEECC----CCCEEEEE
Confidence 567899999985 788999899999999983 35554443
No 356
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.69 E-value=1.1 Score=59.30 Aligned_cols=80 Identities=25% Similarity=0.350 Sum_probs=62.4
Q ss_pred CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCce
Q 000055 2366 EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGM 2445 (2548)
Q Consensus 2366 s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~ 2445 (2548)
...+.-+.|+|. -.++|.+..+|.|-+..+. . -+
T Consensus 20 ~~~i~~~ewnP~-------~dLiA~~t~~gelli~R~n----~-----------------------------------qR 53 (665)
T KOG4640|consen 20 PINIKRIEWNPK-------MDLIATRTEKGELLIHRLN----W-----------------------------------QR 53 (665)
T ss_pred ccceEEEEEcCc-------cchhheeccCCcEEEEEec----c-----------------------------------ce
Confidence 346778899998 6799999999988887632 1 24
Q ss_pred EEEcccCCCCCE-EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000055 2446 LWYIPKAHLGSV-TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2446 Iwdi~~gH~~~V-tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
+|.+.. |...+ .+++|.|||++||.|-.||+|++-|+.++..+..+
T Consensus 54 lwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 54 LWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred eEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 555432 33344 59999999999999999999999999999888653
No 357
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=89.27 E-value=43 Score=43.01 Aligned_cols=205 Identities=17% Similarity=0.188 Sum_probs=109.7
Q ss_pred EEEcCCCCEEEEE--ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000055 2225 FSSHPLRPFFLVG--SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2225 VsfSPdG~~LASG--S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
++.+.+|+++..- +--.+|.|-|+..++.+..+.. ..+..+-=+ ..+.|.+-+.||++....+..
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~------------PGC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT------------PGCWLIYPS-GNRGFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG------------TSEEEEEEE-ETTEEEEEETTSCEEEEEETS
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC------------CCEEEEEec-CCCceEEEecCCceEEEEECC
Confidence 4556889888763 5566799999999988888754 223333212 235688999999999999985
Q ss_pred CcccccccCccceeccCCcccEE---EEcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceeeec----------cCCC
Q 000055 2303 GGRSNVRPMESCLCFSSHAMDVS---YITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASITC----------HEGG 2368 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~---afSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g----------Hs~~ 2368 (2548)
..+..... ...|..-...+. .+...+ .++.+ |.+|.|+--|+.....+....+.- -.++
T Consensus 167 ~Gk~~~~~---t~~F~~~~dp~f~~~~~~~~~~~~~F~----Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG 239 (342)
T PF06433_consen 167 DGKEAQKS---TKVFDPDDDPLFEHPAYSRDGGRLYFV----SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG 239 (342)
T ss_dssp TSSEEEEE---EEESSTTTS-B-S--EEETTTTEEEEE----BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S
T ss_pred CCCEeEee---ccccCCCCcccccccceECCCCeEEEE----ecCCEEEEEeccCCcccccCcccccCccccccCcCCcc
Confidence 44332111 122333233332 233333 34444 278888888876421111111110 0122
Q ss_pred eEEEEEccCCCCCCCCCCEEEE--Ee-----CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCC
Q 000055 2369 ARSISVFDNDLGSGSVSPLIVT--GG-----KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGD 2441 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVS--GS-----~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D 2441 (2548)
-.-+++++.. +.+.+. .+ +|+.-.||-+. +++++.+..+
T Consensus 240 ~Q~~A~~~~~------~rlyvLMh~g~~gsHKdpgteVWv~D-~~t~krv~Ri--------------------------- 285 (342)
T PF06433_consen 240 WQLIAYHAAS------GRLYVLMHQGGEGSHKDPGTEVWVYD-LKTHKRVARI--------------------------- 285 (342)
T ss_dssp SS-EEEETTT------TEEEEEEEE--TT-TTS-EEEEEEEE-TTTTEEEEEE---------------------------
T ss_pred eeeeeecccc------CeEEEEecCCCCCCccCCceEEEEEE-CCCCeEEEEE---------------------------
Confidence 3334555441 222221 11 23333333322 4555555444
Q ss_pred CCceEEEcccCCCCCEEEEEEeCCCC-EEEEEe-CCCcEEEEECCCCcEEEEec
Q 000055 2442 QNGMLWYIPKAHLGSVTRISTVPNTS-LFLTGS-KDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2442 ~sv~Iwdi~~gH~~~VtsLafSPdG~-~LaSGS-~DGtIrIWDl~Tgell~tL~ 2493 (2548)
. -...+.+|+.+.+.+ +|++.+ .++.+.|||..+|+.+++++
T Consensus 286 ---------~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 286 ---------P-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ---------E-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ---------e-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 1 123567888888764 666554 58999999999999999884
No 358
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.20 E-value=1.3 Score=61.69 Aligned_cols=103 Identities=25% Similarity=0.324 Sum_probs=70.7
Q ss_pred CCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC
Q 000055 2385 SPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP 2464 (2548)
Q Consensus 2385 g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP 2464 (2548)
+..++.|++.|.|-..|++. . +..++ |+ ..-.++|++++|+.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~----n-L~~~~-------------------------------~n--e~v~~~Vtsvafn~ 140 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTG----N-LGPLH-------------------------------QN--ERVQGPVTSVAFNQ 140 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhc----c-cchhh-------------------------------cC--CccCCcceeeEecC
Confidence 33789999999999999642 1 11010 00 22457999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEEC
Q 000055 2465 NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL 2541 (2548)
+|..++.|-.+|.|.+||+..++.++.+. -|+.++.+.+.-...+.+. ++++..-|. +|++
T Consensus 141 dg~~l~~G~~~G~V~v~D~~~~k~l~~i~--------------e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 141 DGSLLLAGLGDGHVTVWDMHRAKILKVIT--------------EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCceeccccCCCcEEEEEccCCcceeeee--------------ecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 99999999999999999999999988772 2333333444444444444 667766665 6665
No 359
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.78 E-value=69 Score=39.50 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=75.1
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccC
Q 000055 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPM 2311 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~ 2311 (2548)
.+++.|+..+.+.--|..+|...-.-.. . .+|-+-+.- -|++++.|...|.+.+.+..+|.......
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g----------~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~- 90 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-G----------VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFV- 90 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-C----------ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeee-
Confidence 4666788888888888888876533110 0 222222221 47889999999999999999985432110
Q ss_pred ccceeccCCcccEEE-EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000055 2312 ESCLCFSSHAMDVSY-ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2312 ~s~~t~~gH~~~V~a-fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
.. .+-.+.+ ..+++.+|..+ |.|++.+.-|.++ ..++...++-.+...+-+..|
T Consensus 91 ----~~--~~vk~~a~~d~~~glIycg---shd~~~yalD~~~--~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 91 ----IL--ETVKVRAQCDFDGGLIYCG---SHDGNFYALDPKT--YGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred ----eh--hhhccceEEcCCCceEEEe---cCCCcEEEecccc--cceEEecccCCceeccceecC
Confidence 01 1112222 56788888887 4999999999986 566666554333333333344
No 360
>PHA02713 hypothetical protein; Provisional
Probab=88.36 E-value=5.7 Score=54.27 Aligned_cols=25 Identities=0% Similarity=0.062 Sum_probs=20.4
Q ss_pred CCCEEEEEeCCC--cEEEEECCCCcEE
Q 000055 2465 NTSLFLTGSKDG--DVKLWDAKAAQLV 2489 (2548)
Q Consensus 2465 dG~~LaSGS~DG--tIrIWDl~Tgell 2489 (2548)
+|++.++||.|| .+-.||..+.+-.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred CCEEEEEeeecceeehhhcCccccccc
Confidence 788999999988 7788888877654
No 361
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=87.57 E-value=14 Score=40.12 Aligned_cols=106 Identities=15% Similarity=0.256 Sum_probs=64.6
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEE
Q 000055 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY 2448 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwd 2448 (2548)
|+++++..-+ +...+.|++|+.|..||+|+= ...+..+
T Consensus 2 V~al~~~d~d---~dg~~eLlvGs~D~~IRvf~~-----~e~~~Ei---------------------------------- 39 (111)
T PF14783_consen 2 VTALCLFDFD---GDGENELLVGSDDFEIRVFKG-----DEIVAEI---------------------------------- 39 (111)
T ss_pred eeEEEEEecC---CCCcceEEEecCCcEEEEEeC-----CcEEEEE----------------------------------
Confidence 5666665532 112468999999999999992 1333232
Q ss_pred cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--
Q 000055 2449 IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-- 2526 (2548)
Q Consensus 2449 i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-- 2526 (2548)
.-.+.|++++-... ..|+.|-.+|+|-+|+-. +.+...+.. | .++ + +....+..+|
T Consensus 40 ---~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK-------------~-~~~-~-~~~~D~~gdG~~ 97 (111)
T PF14783_consen 40 ---TETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIKSK-------------N-QVT-S-MAFYDINGDGVP 97 (111)
T ss_pred ---ecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeeccC-------------C-CeE-E-EEEEcCCCCCce
Confidence 13456777776655 668889999999999863 333333211 1 111 1 1222344455
Q ss_pred -EEEEECCCcEEE
Q 000055 2527 -FLSCGGDGSVKL 2538 (2548)
Q Consensus 2527 -LaSGS~DGtIrI 2538 (2548)
|++|-.+|.|-+
T Consensus 98 eLI~GwsnGkve~ 110 (111)
T PF14783_consen 98 ELIVGWSNGKVEV 110 (111)
T ss_pred EEEEEecCCeEEe
Confidence 999999998754
No 362
>PRK02888 nitrous-oxide reductase; Validated
Probab=87.50 E-value=13 Score=50.74 Aligned_cols=197 Identities=10% Similarity=0.011 Sum_probs=110.3
Q ss_pred EcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC----cEEEEEcC
Q 000055 2227 SHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG----TVCTWQLE 2301 (2548)
Q Consensus 2227 fSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG----tVrVWDl~ 2301 (2548)
+.|||+.+. +.-..+.+.+.|.++.+...++.. .+.-..++++++|+++++.+.+. ++..-+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-----------dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~ 268 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-----------DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA 268 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe-----------CCCcccceECCCCCEEEEeccCcccCcceeeeccc
Confidence 346776554 334456778888887776666543 13345678999999998886432 23222221
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCC---CCCcceeeeccCCCeEEEEEccCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAP---PTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~---~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
..... ..+. ...+..+.++|+....+ ++.|.+.|.++. ....+..+ .-....+.+.++|+
T Consensus 269 e~d~~--------vvfn--i~~iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPD- 331 (635)
T PRK02888 269 ERDWV--------VVFN--IARIEEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPD- 331 (635)
T ss_pred cCceE--------EEEc--hHHHHHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEE-ECCCCccceEECCC-
Confidence 11000 0000 00111234578766653 578999998751 11233333 34567788999999
Q ss_pred CCCCCCCCE-EEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000055 2379 LGSGSVSPL-IVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2379 lg~gs~g~l-LVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
+++ ++++..+.+|.+.|+..+ +.. +. ... .+. ...+-.+ .- .-.-
T Consensus 332 ------GkylyVanklS~tVSVIDv~k~---k~~--~~-~~~-----------~~~---------~~vvaev-ev-GlGP 377 (635)
T PRK02888 332 ------GKYFIANGKLSPTVTVIDVRKL---DDL--FD-GKI-----------KPR---------DAVVAEP-EL-GLGP 377 (635)
T ss_pred ------CCEEEEeCCCCCcEEEEEChhh---hhh--hh-ccC-----------Ccc---------ceEEEee-cc-CCCc
Confidence 555 555567999999996531 110 00 000 000 0000000 00 1112
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000055 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
.-.+|+++|....|.-.|..|..||+.+
T Consensus 378 LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 378 LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3467899999888888999999999875
No 363
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=87.47 E-value=17 Score=39.63 Aligned_cols=95 Identities=21% Similarity=0.298 Sum_probs=64.6
Q ss_pred EcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCcc
Q 000055 2327 ITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYI 2405 (2548)
Q Consensus 2327 fSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l 2405 (2548)
+.-+| +.|++| |+|..|++|+-. ..+..+. ..+.|+++..... ..++.+-.+|+|-+|+-
T Consensus 10 ~d~dg~~eLlvG---s~D~~IRvf~~~----e~~~Ei~-e~~~v~~L~~~~~--------~~F~Y~l~NGTVGvY~~--- 70 (111)
T PF14783_consen 10 FDGDGENELLVG---SDDFEIRVFKGD----EIVAEIT-ETDKVTSLCSLGG--------GRFAYALANGTVGVYDR--- 70 (111)
T ss_pred cCCCCcceEEEe---cCCcEEEEEeCC----cEEEEEe-cccceEEEEEcCC--------CEEEEEecCCEEEEEeC---
Confidence 44444 355555 499999999863 3555554 4677888886655 38999999999999992
Q ss_pred ccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEe-CCC---CEEEEEeCCCcEE
Q 000055 2406 ATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTV-PNT---SLFLTGSKDGDVK 2479 (2548)
Q Consensus 2406 ~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafS-PdG---~~LaSGS~DGtIr 2479 (2548)
..++|++...|. +.++++. .++ .-|++|=.+|.|-
T Consensus 71 -------------------------------------~~RlWRiKSK~~--~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 -------------------------------------SQRLWRIKSKNQ--VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -------------------------------------cceeeeeccCCC--eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 135676655454 5566543 333 4788888888764
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.18 E-value=14 Score=49.14 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=73.3
Q ss_pred EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc
Q 000055 2325 SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY 2404 (2548)
Q Consensus 2325 ~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~ 2404 (2548)
..++|+|+.++++| ||.-.|+.... .+. . ..+......|.+.+ .+++-...++|.++.-
T Consensus 38 ls~npngr~v~V~g----~geY~iyt~~~--~r~--k---~~G~g~~~vw~~~n--------~yAv~~~~~~I~I~kn-- 96 (443)
T PF04053_consen 38 LSHNPNGRFVLVCG----DGEYEIYTALA--WRN--K---AFGSGLSFVWSSRN--------RYAVLESSSTIKIYKN-- 96 (443)
T ss_dssp EEE-TTSSEEEEEE----TTEEEEEETTT--TEE--E---EEEE-SEEEE-TSS--------EEEEE-TTS-EEEEET--
T ss_pred EEECCCCCEEEEEc----CCEEEEEEccC--Ccc--c---ccCceeEEEEecCc--------cEEEEECCCeEEEEEc--
Confidence 35899999999975 88888888432 111 1 12344567787763 5777777888999631
Q ss_pred cccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000055 2405 IATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2405 l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.+. +....+ + ....+..+-. |.+|...+.+ .|.+||..
T Consensus 97 ~~~-~~~k~i------------------------------------~-~~~~~~~If~---G~LL~~~~~~-~i~~yDw~ 134 (443)
T PF04053_consen 97 FKN-EVVKSI------------------------------------K-LPFSVEKIFG---GNLLGVKSSD-FICFYDWE 134 (443)
T ss_dssp TEE--TT------------------------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TT
T ss_pred Ccc-ccceEE------------------------------------c-CCcccceEEc---CcEEEEECCC-CEEEEEhh
Confidence 111 110111 0 0112333322 7777777655 89999999
Q ss_pred CCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECC
Q 000055 2485 AAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2485 Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~ 2542 (2548)
+++.+.++. + ..|..+.|+++| +++-..+.++.|.+.+
T Consensus 135 ~~~~i~~i~-------------------v-~~vk~V~Ws~~g~~val~t~~~i~il~~~ 173 (443)
T PF04053_consen 135 TGKLIRRID-------------------V-SAVKYVIWSDDGELVALVTKDSIYILKYN 173 (443)
T ss_dssp T--EEEEES-------------------S--E-EEEEE-TTSSEEEEE-S-SEEEEEE-
T ss_pred HcceeeEEe-------------------c-CCCcEEEEECCCCEEEEEeCCeEEEEEec
Confidence 999999882 1 125677899999 5544456677777654
No 365
>PHA02713 hypothetical protein; Provisional
Probab=86.97 E-value=26 Score=48.05 Aligned_cols=71 Identities=10% Similarity=0.080 Sum_probs=35.8
Q ss_pred CCCEEEEEeCC------CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccC--CCCeEEEEECCC
Q 000055 2282 YGHRFASAALD------GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS--NGINVVVWDTLA 2353 (2548)
Q Consensus 2282 dG~~LaSGS~D------GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS--~DGtVrIWDl~t 2353 (2548)
++..++.||.+ ..+..||..+..-....+. ...........-+|++.+.||... .-..+..||..+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m------~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM------IKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC------cchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCC
Confidence 56777777754 2466788776532221111 101111112233678888887310 013588899876
Q ss_pred CCCCc
Q 000055 2354 PPTSS 2358 (2548)
Q Consensus 2354 ~~~k~ 2358 (2548)
.....
T Consensus 377 ~~W~~ 381 (557)
T PHA02713 377 DKWKM 381 (557)
T ss_pred CeEEE
Confidence 43333
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=86.85 E-value=1e+02 Score=40.43 Aligned_cols=203 Identities=15% Similarity=0.148 Sum_probs=122.2
Q ss_pred EEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC---CCcEEEE
Q 000055 2223 RAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---DGTVCTW 2298 (2548)
Q Consensus 2223 ~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~---DGtVrVW 2298 (2548)
..++.++.+. .+++...++.|.+.|..+.+....... + ..-..++++++++.+..+.. ++++.+.
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G---------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvi 145 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--G---------LGPVGLAVDPDGKYVYVANAGNGNNTVSVI 145 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--c---------cCCceEEECCCCCEEEEEecccCCceEEEE
Confidence 4455667776 455556678999999777766665432 0 25678999999988877765 6888888
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-e---eeccCCCeEEEEE
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-S---ITCHEGGARSISV 2374 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-s---l~gHs~~VtSLaf 2374 (2548)
|-.+++..... ..+....-..++|+|+.+..+. +.++.|.+.|.... .... . ...-...-..+.+
T Consensus 146 d~~t~~~~~~~-------~vG~~P~~~a~~p~g~~vyv~~--~~~~~v~vi~~~~~--~v~~~~~~~~~~~~~~P~~i~v 214 (381)
T COG3391 146 DAATNKVTATI-------PVGNTPTGVAVDPDGNKVYVTN--SDDNTVSVIDTSGN--SVVRGSVGSLVGVGTGPAGIAV 214 (381)
T ss_pred eCCCCeEEEEE-------ecCCCcceEEECCCCCeEEEEe--cCCCeEEEEeCCCc--ceeccccccccccCCCCceEEE
Confidence 88777543321 2222222235899999777764 36899999997642 1111 0 0111223456677
Q ss_pred ccCCCCCCCCCC-EEEEEeCC--CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000055 2375 FDNDLGSGSVSP-LIVTGGKG--GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2375 sP~dlg~gs~g~-lLVSGS~D--GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
.|+ +. ..++-..+ +.+...|. .++...... ...
T Consensus 215 ~~~-------g~~~yV~~~~~~~~~v~~id~---~~~~v~~~~----------------------------------~~~ 250 (381)
T COG3391 215 DPD-------GNRVYVANDGSGSNNVLKIDT---ATGNVTATD----------------------------------LPV 250 (381)
T ss_pred CCC-------CCEEEEEeccCCCceEEEEeC---CCceEEEec----------------------------------ccc
Confidence 777 44 33333333 57777773 333333221 001
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEe
Q 000055 2452 AHLGSVTRISTVPNTSLFLTGSK-DGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~Tgell~tL 2492 (2548)
+.. .-..+..+|+|..+.+... .+.+.+-|..+.+....+
T Consensus 251 ~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 251 GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence 111 3345677888887777733 478888888777776655
No 367
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=86.27 E-value=39 Score=46.62 Aligned_cols=138 Identities=17% Similarity=0.254 Sum_probs=73.3
Q ss_pred CCEEEEEECC------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-C-----cEEEE
Q 000055 2231 RPFFLVGSSN------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-G-----TVCTW 2298 (2548)
Q Consensus 2231 G~~LASGS~D------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-G-----tVrVW 2298 (2548)
+.+++.||.+ ..+..+|..+++-... ..++ +...-.+++.. ++..+++||.| | ++-.|
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~-a~m~--------~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~Y 354 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSL-APMP--------SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERY 354 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeec-CCCC--------cccccccEEEE-CCEEEEEccccCCCcccceEEEe
Confidence 4556667666 3577888877643322 1111 11222333333 46778899988 3 66778
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCC-----eEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI-----NVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DG-----tVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
|..+++-....+. . ...+...+. .-+|.+.|+|| .|| +|-.||..+.....+..+.......-.+.
T Consensus 355 D~~~~~W~~~a~M---~-~~R~~~~v~--~l~g~iYavGG---~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~ 425 (571)
T KOG4441|consen 355 DPRTNQWTPVAPM---N-TKRSDFGVA--VLDGKLYAVGG---FDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV 425 (571)
T ss_pred cCCCCceeccCCc---c-CccccceeE--EECCEEEEEec---cccccccccEEEecCCCCcccccCCCCcceeeeEEEE
Confidence 8776642221111 1 111122222 23788888888 454 47788988755555554433222222222
Q ss_pred EccCCCCCCCCCCEEEEEeCCCc
Q 000055 2374 VFDNDLGSGSVSPLIVTGGKGGD 2396 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGt 2396 (2548)
+ + +.+.+.||.|+.
T Consensus 426 ~---~------g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 426 L---G------GKLYIIGGGDGS 439 (571)
T ss_pred E---C------CEEEEEcCcCCC
Confidence 2 1 568888886654
No 368
>PRK10115 protease 2; Provisional
Probab=85.52 E-value=1.7e+02 Score=41.46 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=66.7
Q ss_pred EEEEEEcCCCCEEEEE-----ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----
Q 000055 2222 TRAFSSHPLRPFFLVG-----SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---- 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASG-----S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---- 2292 (2548)
+..+.++|+|++|+.+ +....+++-|+.+|..+... +. +.-..++|.+|++.|+....+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~--i~----------~~~~~~~w~~D~~~~~y~~~~~~~~ 196 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL--LD----------NVEPSFVWANDSWTFYYVRKHPVTL 196 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc--cc----------CcceEEEEeeCCCEEEEEEecCCCC
Confidence 5678889999988853 33345888898877532221 00 111569999998877666443
Q ss_pred --CcEEEEEcCCCcccccccCccceeccCCc--ccEEE-EcCCCCEEEEEeccCCCCeEEEEECCC
Q 000055 2293 --GTVCTWQLEVGGRSNVRPMESCLCFSSHA--MDVSY-ITSSGSVIAAAGHSSNGINVVVWDTLA 2353 (2548)
Q Consensus 2293 --GtVrVWDl~tgk~i~i~p~~s~~t~~gH~--~~V~a-fSpdGslLATgG~SS~DGtVrIWDl~t 2353 (2548)
..|..+++.++..... ..+.... ..+.. .+.+++.++....+..++.+.+++...
T Consensus 197 ~~~~v~~h~lgt~~~~d~------lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 197 LPYQVWRHTIGTPASQDE------LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred CCCEEEEEECCCChhHCe------EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 2566777776631111 1122211 12222 344777666554444567899999654
No 369
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=85.14 E-value=32 Score=45.66 Aligned_cols=154 Identities=16% Similarity=0.110 Sum_probs=87.0
Q ss_pred eEEEEEEEcCCCCEEEEE---ECC-CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE-EeCCCc
Q 000055 2220 ISTRAFSSHPLRPFFLVG---SSN-THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDGT 2294 (2548)
Q Consensus 2220 V~V~~VsfSPdG~~LASG---S~D-GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS-GS~DGt 2294 (2548)
..+..-.|+|++..++.- ... ..+.++++++++...... .. +.-..-+|+|||++++. ...||.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~----------g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FN----------GNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cC----------CccCCccCCCCCCEEEEEECCCCC
Confidence 335666788888876632 222 469999999876554442 12 33455689999988765 466776
Q ss_pred EEEE--EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000055 2295 VCTW--QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2295 VrVW--Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
..+| |+.++.... .....+... --+|+|||+.++.+. +..|.-.||-.... +.....+....+.-..-
T Consensus 262 ~~iy~~dl~~~~~~~------Lt~~~gi~~-~Ps~spdG~~ivf~S--dr~G~p~I~~~~~~-g~~~~riT~~~~~~~~p 331 (425)
T COG0823 262 PDIYLMDLDGKNLPR------LTNGFGINT-SPSWSPDGSKIVFTS--DRGGRPQIYLYDLE-GSQVTRLTFSGGGNSNP 331 (425)
T ss_pred ccEEEEcCCCCccee------cccCCcccc-CccCCCCCCEEEEEe--CCCCCcceEEECCC-CCceeEeeccCCCCcCc
Confidence 5555 554433111 000111111 125899999998875 35666555554432 23334444333333366
Q ss_pred EEccCCCCCCCCCCEEEEEeC-CCc--EEEEe
Q 000055 2373 SVFDNDLGSGSVSPLIVTGGK-GGD--VGIHD 2401 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~-DGt--VrLWD 2401 (2548)
.|+|+ |++++..+. +|. |.+.|
T Consensus 332 ~~Spd-------G~~i~~~~~~~g~~~i~~~~ 356 (425)
T COG0823 332 VWSPD-------GDKIVFESSSGGQWDIDKND 356 (425)
T ss_pred cCCCC-------CCEEEEEeccCCceeeEEec
Confidence 67777 677666554 344 44554
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=84.84 E-value=47 Score=43.95 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=36.6
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCC
Q 000055 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR 2403 (2548)
.|+||+.. ++.+..+.-..+.+.++.|..++ .|+.-..||.++++|+.
T Consensus 62 ~I~iys~s---G~ll~~i~w~~~~iv~~~wt~~e--------~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSS---GKLLSSIPWDSGRIVGMGWTDDE--------ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCC---CCEeEEEEECCCCEEEEEECCCC--------eEEEEEcCCEEEEEeCC
Confidence 58888875 45666555444899999998774 67777899999999964
No 371
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=84.49 E-value=1.3e+02 Score=38.57 Aligned_cols=111 Identities=11% Similarity=0.097 Sum_probs=57.4
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC---CCEEEEEeC-C------
Q 000055 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY---GHRFASAAL-D------ 2292 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd---G~~LaSGS~-D------ 2292 (2548)
+.|+|.|+|+++++ ...|.|++++ ..+.....+..... -..........++++|+ ..+|..... .
T Consensus 5 ~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~---v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 5 RSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPE---VFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp EEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TT---TBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred eEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceeccccc---ccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 78899999987665 6699999999 44443222222210 01123467899999994 334433322 1
Q ss_pred --CcEEEEEcCCCc-ccc-cccC---ccceeccCCcccEEEEcCCCCEEEEEe
Q 000055 2293 --GTVCTWQLEVGG-RSN-VRPM---ESCLCFSSHAMDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2293 --GtVrVWDl~tgk-~i~-i~p~---~s~~t~~gH~~~V~afSpdGslLATgG 2338 (2548)
..|.-|....+. ... .... ........|...-..|.|||.+.++.|
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 134444444331 000 0000 000012346655567999998888877
No 372
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=84.29 E-value=30 Score=45.91 Aligned_cols=112 Identities=20% Similarity=0.186 Sum_probs=64.6
Q ss_pred CCeEEEEEccCCCEEEEEe---CC-CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEE
Q 000055 2272 ASISALQFDHYGHRFASAA---LD-GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS---~D-GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVr 2347 (2548)
..+..-+|+|++..++..+ .. ..+.++++++++...+. .+.++.. .-.|+|||+.++.+. ..||...
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~g~~~-~P~fspDG~~l~f~~--~rdg~~~ 263 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFNGNNG-APAFSPDGSKLAFSS--SRDGSPD 263 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------ccCCccC-CccCCCCCCEEEEEE--CCCCCcc
Confidence 4566678889887765442 22 35889999988643322 1333332 225899999988876 3667655
Q ss_pred EE--ECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE-EEeCCCcEEEEeC
Q 000055 2348 VW--DTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV-TGGKGGDVGIHDF 2402 (2548)
Q Consensus 2348 IW--Dl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV-SGS~DGtVrLWDL 2402 (2548)
|| |+.. .. ...+..-.+.-..=.|+|+ |+.++ +.+..|.-.||-+
T Consensus 264 iy~~dl~~--~~-~~~Lt~~~gi~~~Ps~spd-------G~~ivf~Sdr~G~p~I~~~ 311 (425)
T COG0823 264 IYLMDLDG--KN-LPRLTNGFGINTSPSWSPD-------GSKIVFTSDRGGRPQIYLY 311 (425)
T ss_pred EEEEcCCC--Cc-ceecccCCccccCccCCCC-------CCEEEEEeCCCCCcceEEE
Confidence 55 5543 22 3233322233335567777 55544 5556666555553
No 373
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=81.44 E-value=3.3 Score=38.28 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=31.2
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000055 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV 2489 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell 2489 (2548)
....|.+++|+|..+++|.|+.||.|.++.+ +++.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 3457999999999999999999999999998 55543
No 374
>PHA03098 kelch-like protein; Provisional
Probab=81.33 E-value=30 Score=46.94 Aligned_cols=111 Identities=12% Similarity=0.139 Sum_probs=53.5
Q ss_pred CCCEEEEEECCC------eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC-----cEEEE
Q 000055 2230 LRPFFLVGSSNT------HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-----TVCTW 2298 (2548)
Q Consensus 2230 dG~~LASGS~DG------sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG-----tVrVW 2298 (2548)
++..++.||.++ .+..||..+++.. .....+. + ......+.. ++..++.||.++ .+..|
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~---~----R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~y 363 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIY---P----RKNPGVTVF--NNRIYVIGGIYNSISLNTVESW 363 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCc---c----cccceEEEE--CCEEEEEeCCCCCEecceEEEE
Confidence 455666666543 4677887766542 2211110 1 111222222 577778887663 56678
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC---CeEEEEECCCCCC
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG---INVVVWDTLAPPT 2356 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D---GtVrIWDl~t~~~ 2356 (2548)
|..+++-....+.. ....+|.. ...++++++.||....+ +.+..||+.+...
T Consensus 364 d~~~~~W~~~~~lp--~~r~~~~~----~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 364 KPGESKWREEPPLI--FPRYNPCV----VNVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred cCCCCceeeCCCcC--cCCccceE----EEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 87665322111110 01112221 22366777777632111 4578889875433
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.26 E-value=14 Score=48.94 Aligned_cols=148 Identities=11% Similarity=0.011 Sum_probs=96.0
Q ss_pred CCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccC
Q 000055 2329 SSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATG 2408 (2548)
Q Consensus 2329 pdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TG 2408 (2548)
.+.++++..+. ....++--|+.. ++.+.....|.+ |+-+.+.|+.-+.-.....-+.|-.|..|.-||.| ....
T Consensus 343 ~dsnlil~~~~--~~~~l~klDIE~--GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpR-v~~~ 416 (644)
T KOG2395|consen 343 ADSNLILMDGG--EQDKLYKLDIER--GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPR-VQGK 416 (644)
T ss_pred cccceEeeCCC--CcCcceeeeccc--ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEeccc-ccCc
Confidence 45556655442 445677777776 778888877766 77777777731110012234567789999999988 3332
Q ss_pred ceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q 000055 2409 KTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVK 2479 (2548)
Q Consensus 2409 k~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIr 2479 (2548)
..+...............+.+...+|.+ +++.+|.+++|+- +.+-..+|.-|..+.+|++++..+ +..+.
T Consensus 417 ~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLl 495 (644)
T KOG2395|consen 417 NKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLL 495 (644)
T ss_pred ceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEE
Confidence 2222222223333444556666777777 8889999999983 457788999999999999988765 45565
Q ss_pred EEEC
Q 000055 2480 LWDA 2483 (2548)
Q Consensus 2480 IWDl 2483 (2548)
+-|+
T Consensus 496 Li~t 499 (644)
T KOG2395|consen 496 LIDT 499 (644)
T ss_pred EEEE
Confidence 6554
No 376
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=81.22 E-value=3.8 Score=49.21 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=76.6
Q ss_pred EEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc
Q 000055 2286 FASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH 2365 (2548)
Q Consensus 2286 LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH 2365 (2548)
+..-+.||.|+-++++.-+.. .+. -.-+... ..+..-+..+++|+ .+|.|.+|..... +.....+..-
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s-~rs------e~~~~e~-~~v~~~~~~~~vG~---~dg~v~~~n~n~~-g~~~d~~~s~ 100 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKES-CRS------ERFIDEG-QRVVTASAKLMVGT---SDGAVYVFNWNLE-GAHSDRVCSG 100 (238)
T ss_pred hccccCCcccccchhhhhhhh-hhh------hhhhhcc-eeecccCceEEeec---ccceEEEecCCcc-chHHHhhhcc
Confidence 445577888888887643211 000 0111111 11222345666665 7999999988631 1111111111
Q ss_pred CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCce
Q 000055 2366 EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGM 2445 (2548)
Q Consensus 2366 s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~ 2445 (2548)
...|.+..-.-.+ +.+..+++.||.|+.|++ +.++.+...
T Consensus 101 ~e~i~~~Ip~~~~------~~~~c~~~~dg~ir~~n~---~p~k~~g~~------------------------------- 140 (238)
T KOG2444|consen 101 EESIDLGIPNGRD------SSLGCVGAQDGRIRACNI---KPNKVLGYV------------------------------- 140 (238)
T ss_pred cccceeccccccc------cceeEEeccCCceeeecc---ccCceeeee-------------------------------
Confidence 2222222222221 558889999999999994 334433322
Q ss_pred EEEcccCCC-CCEEEEEEeCCCCEEEEE--eCCCcEEEEECCC
Q 000055 2446 LWYIPKAHL-GSVTRISTVPNTSLFLTG--SKDGDVKLWDAKA 2485 (2548)
Q Consensus 2446 Iwdi~~gH~-~~VtsLafSPdG~~LaSG--S~DGtIrIWDl~T 2485 (2548)
..|. .++........+++++.+ |.|..++.|++..
T Consensus 141 -----g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 141 -----GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred -----ccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 2344 455555556666777777 7777777887763
No 377
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=79.37 E-value=50 Score=41.82 Aligned_cols=163 Identities=17% Similarity=0.203 Sum_probs=98.5
Q ss_pred ceeEEeecCCCCcccceeeecCCeEEEEecCCCCCCCceeEEEEEEEEecceEEEeeecCCCCeeEEec--ceEEeeccC
Q 000055 96 PVTSISWSPETPSIGQLAAASENCIFVFAHDSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGG--METVLWKKK 173 (2548)
Q Consensus 96 ~V~~v~~s~~~~~~G~iAa~~~n~v~if~~~~~~~~~~~~W~~~~~~~~~~~v~~l~W~~~G~~ll~~g--~~~~lw~~~ 173 (2548)
+|.|+.--. |+|+|+.|+.|.||.-+... .+.+.+.+...+.|.+|... |++|++|. ..+.+.+=.
T Consensus 90 ~V~ai~~~~-----~~lv~~~g~~l~v~~l~~~~-----~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 90 PVTAICSFN-----GRLVVAVGNKLYVYDLDNSK-----TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp -EEEEEEET-----TEEEEEETTEEEEEEEETTS-----SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred cceEhhhhC-----CEEEEeecCEEEEEEccCcc-----cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 688887663 89999999999999665222 78999999899999999988 66888764 556666544
Q ss_pred CCcceEEEEecCCCCceeeeeeeccCCceeeecccc------ccccCCCCCCCceeeEeecCCc-ceeEEEEeecCCcce
Q 000055 174 NTLWEIAWKFKENYPQNLVSATWSIEGPSATAASMS------QLDLLGPKEAGKCVFICCSDGK-SEYIKLELCHPQPVS 246 (2548)
Q Consensus 174 ~~~W~~~W~~~~~~~~~l~~~~~spdg~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~yl~HP~~V~ 246 (2548)
+...++..-++...|....++.|-+|+..+.++-+. .+.+....+. ++. .=-.......+..|+
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~---------~~~~~L~~~~~f~lg~~v~ 228 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSR---------DGDPKLERISSFHLGDIVN 228 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTT---------TTTTBEEEEEEEE-SS-EE
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccc---------cccccceeEEEEECCCccc
Confidence 467788888888888888888888888655555441 1221111110 111 111234456678888
Q ss_pred ee---ecccCCcccCCCCCccccceeEeeeecCCeEEEEEe
Q 000055 247 MV---QWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCE 284 (2548)
Q Consensus 247 ~~---~Wr~~~r~~s~~~~~~~v~nvLlT~c~D~~~RlW~E 284 (2548)
.| +-.| +..++. ....+.++-++.+|..=.=..
T Consensus 229 ~~~~~~l~~--~~~~~~---~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 229 SFRRGSLIP--RSGSSE---SPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp EEEE--SS----SSSS----TTEEEEEEEEETTS-EEEEEE
T ss_pred eEEEEEeee--cCCCCc---ccccceEEEEecCCEEEEEEe
Confidence 88 4422 111111 124678888889998764444
No 378
>PHA02790 Kelch-like protein; Provisional
Probab=78.69 E-value=40 Score=45.49 Aligned_cols=108 Identities=11% Similarity=0.090 Sum_probs=53.0
Q ss_pred CCEEEEEECCC-----eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC--cEEEEEcCCC
Q 000055 2231 RPFFLVGSSNT-----HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG--TVCTWQLEVG 2303 (2548)
Q Consensus 2231 G~~LASGS~DG-----sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG--tVrVWDl~tg 2303 (2548)
+.++++||.++ .+..||..+++.... ...+. + ......+. -++...+.||.++ ++..||..++
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~-~~m~~-----~--r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n 341 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPI-PPMNS-----P--RLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDA 341 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEEC-CCCCc-----h--hhcceEEE--ECCEEEEECCcCCCCceEEEECCCC
Confidence 45566776543 466777776543221 11110 0 01111222 3577777887643 5777887655
Q ss_pred cccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCC
Q 000055 2304 GRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAP 2354 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~ 2354 (2548)
+-....+.. .....|. ...-+|++.+.||.......+..||.++.
T Consensus 342 ~W~~~~~l~--~~r~~~~----~~~~~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 342 AWVNMPSLL--KPRCNPA----VASINNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred eEEECCCCC--CCCcccE----EEEECCEEEEecCcCCCCccEEEEeCCCC
Confidence 322221110 1111121 12236788888874212345778888753
No 379
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=78.00 E-value=2.4e+02 Score=37.22 Aligned_cols=278 Identities=12% Similarity=0.042 Sum_probs=118.8
Q ss_pred EcCCCCEEE-EEECCC--eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 000055 2227 SHPLRPFFL-VGSSNT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVG 2303 (2548)
Q Consensus 2227 fSPdG~~LA-SGS~DG--sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tg 2303 (2548)
|.++|+.|+ ++..|| .+.+-|+.+++..+-- ..++ .......++++++.++-...+..|+..|+++.
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g---------~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPG---------DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS----------B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCC---------CCccceEEecCCCeEEEEECCCeEEEEECCcC
Confidence 447886555 455555 4666677777644332 2111 11223556688888776666678888899887
Q ss_pred cccccccCccceeccCCcc-cEEE-EcCCCCEEEEEeccC-------------------CCCeEEEEECCCCCCCcceee
Q 000055 2304 GRSNVRPMESCLCFSSHAM-DVSY-ITSSGSVIAAAGHSS-------------------NGINVVVWDTLAPPTSSRASI 2362 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH~~-~V~a-fSpdGslLATgG~SS-------------------~DGtVrIWDl~t~~~k~v~sl 2362 (2548)
+...+ ..+...-. .... .+.++..++..-... -...|.--|+.+ ++. ..+
T Consensus 113 e~~~v------y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t--G~~-~~v 183 (386)
T PF14583_consen 113 EERVV------YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT--GER-KVV 183 (386)
T ss_dssp -EEEE------EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----E-EEE
T ss_pred cEEEE------EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC--Cce-eEE
Confidence 53222 11221111 1222 355666655432100 112344445544 232 233
Q ss_pred eccCCCeEEEEEccCCCCCCCCCCEEEEEeC---CC-cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCcc
Q 000055 2363 TCHEGGARSISVFDNDLGSGSVSPLIVTGGK---GG-DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSK 2438 (2548)
Q Consensus 2363 ~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~---DG-tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~ 2438 (2548)
-.....+..+.|+|.+ ..+|+-|-. |. .-|||-++. .|...+.++.. ........-.|.+||..+.
T Consensus 184 ~~~~~wlgH~~fsP~d------p~li~fCHEGpw~~Vd~RiW~i~~--dg~~~~~v~~~--~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 184 FEDTDWLGHVQFSPTD------PTLIMFCHEGPWDLVDQRIWTINT--DGSNVKKVHRR--MEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp EEESS-EEEEEEETTE------EEEEEEEE-S-TTTSS-SEEEEET--TS---EESS-----TTEEEEEEEE-TTSS-EE
T ss_pred EecCccccCcccCCCC------CCEEEEeccCCcceeceEEEEEEc--CCCcceeeecC--CCCcccccccccCCCCEEE
Confidence 3345677889999985 555555432 33 237787653 23333332111 1233445567888888622
Q ss_pred C----CCCC---ceEEEcccCC------CCCEEEEEEeCCCCEEEEEeCCC----------------cEEEEECCCCcEE
Q 000055 2439 P----GDQN---GMLWYIPKAH------LGSVTRISTVPNTSLFLTGSKDG----------------DVKLWDAKAAQLV 2489 (2548)
Q Consensus 2439 s----~D~s---v~Iwdi~~gH------~~~VtsLafSPdG~~LaSGS~DG----------------tIrIWDl~Tgell 2489 (2548)
. ..+. +.-++..++- ..+..-.-.+++|++++-=+.|. .|.++++..++..
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~ 333 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR 333 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence 1 1111 1111211111 11223344567888887644442 4566788766654
Q ss_pred EEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEEC
Q 000055 2490 YHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2490 ~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL 2541 (2548)
.-. .|.. +. ..+.++...- -....|+||| |.++...|...||-+
T Consensus 334 ~l~--~h~~-sw--~v~~~~~q~~---hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 334 KLA--RHDT-SW--KVLDGDRQVT---HPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEE--E----------BTTBSSTT-------EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eee--eccC-cc--eeecCCCccC---CCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 211 1211 00 1123332211 1344899999 668888888777754
No 380
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=77.70 E-value=4.1 Score=48.92 Aligned_cols=28 Identities=21% Similarity=0.333 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000055 2465 NTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
++.+..+++.||.|+.|++.-++.+...
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeee
Confidence 4567888899999999998877776543
No 381
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=77.20 E-value=5.1 Score=37.06 Aligned_cols=27 Identities=11% Similarity=0.349 Sum_probs=25.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEc
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEF 2248 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl 2248 (2548)
+.+++|+|..+++|.|+.||.|.++++
T Consensus 14 v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 689999999999999999999999998
No 382
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=76.05 E-value=3.2e+02 Score=37.64 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=39.4
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEe------CCCcEEEEEcCCC
Q 000055 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAA------LDGTVCTWQLEVG 2303 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS------~DGtVrVWDl~tg 2303 (2548)
..++.++.|+.+.-.|..+|+.+-...... +. . ...+ .-+| .+..++++. .+|.|..+|.++|
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~-~~--~---~~~~---tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG 191 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGD-YK--A---GYTI---TAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTG 191 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeccccc-cc--c---cccc---cCCcEEECCEEEEeecccccCCCcEEEEEECCCC
Confidence 456677889999999999998876654211 00 0 0011 1112 133455543 2689999999888
Q ss_pred ccc
Q 000055 2304 GRS 2306 (2548)
Q Consensus 2304 k~i 2306 (2548)
+.+
T Consensus 192 ~~l 194 (527)
T TIGR03075 192 KLV 194 (527)
T ss_pred cee
Confidence 644
No 383
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=74.98 E-value=2.5e+02 Score=35.98 Aligned_cols=210 Identities=13% Similarity=0.060 Sum_probs=108.3
Q ss_pred EEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 000055 2226 SSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGG 2304 (2548)
Q Consensus 2226 sfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk 2304 (2548)
.|.++.. ++.+--..+.|.-|+..+++.... . +.+.+.++..-..+..|+++.. -+.+++.+++.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~-~-----------~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~ 96 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVF-P-----------SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGG 96 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEE-E-----------CCCCcccceeecCCCeEEEEcc--ccEEEeccCCc
Confidence 4556655 445666777888888876643222 1 1134455555444555555533 34455655554
Q ss_pred cc-ccccCccceeccCCcccEEEEcCCCCEEEEEec-----c---CCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000055 2305 RS-NVRPMESCLCFSSHAMDVSYITSSGSVIAAAGH-----S---SNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2305 ~i-~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~-----S---S~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
.. ........... ...+++ .+.|+|.+.++... . ..-|.|+-.|.. +..+..+..|-..-+.|+|+
T Consensus 97 ~~t~~~~~~~~~~~-~r~ND~-~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~---g~~~~l~~~~~~~~NGla~S 171 (307)
T COG3386 97 KITLLAEPEDGLPL-NRPNDG-VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD---GGVVRLLDDDLTIPNGLAFS 171 (307)
T ss_pred eeEEeccccCCCCc-CCCCce-eEcCCCCEEEeCCCccccCccccCCcceEEEEcCC---CCEEEeecCcEEecCceEEC
Confidence 31 11111100101 111122 25677877766431 0 012334444431 34455555555667889999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000055 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
|++ ..+.++=+..+.|.-|++.. .++.. ++. +.+.......+
T Consensus 172 pDg------~tly~aDT~~~~i~r~~~d~-~~g~~------------------------------~~~-~~~~~~~~~~G 213 (307)
T COG3386 172 PDG------KTLYVADTPANRIHRYDLDP-ATGPI------------------------------GGR-RGFVDFDEEPG 213 (307)
T ss_pred CCC------CEEEEEeCCCCeEEEEecCc-ccCcc------------------------------CCc-ceEEEccCCCC
Confidence 993 33444445557787777431 11110 000 11111122445
Q ss_pred CEEEEEEeCCCCEEEEEeCCC-cEEEEECCCCcEEEEec
Q 000055 2456 SVTRISTVPNTSLFLTGSKDG-DVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DG-tIrIWDl~Tgell~tL~ 2493 (2548)
.--.++.+.+|.+.+++..+| .|.+|+.. |+++.++.
T Consensus 214 ~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~ 251 (307)
T COG3386 214 LPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK 251 (307)
T ss_pred CCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE
Confidence 556778888888886555554 89999988 88888773
No 384
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=74.66 E-value=2.3e+02 Score=37.22 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=97.0
Q ss_pred EEEEEEcCCCCEEEEEE---CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcEEE
Q 000055 2222 TRAFSSHPLRPFFLVGS---SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS---~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtVrV 2297 (2548)
...++++|++..+.++. .++++.+.|..+++....... +. .+ ..++++|+|.+++.+. .++.|.+
T Consensus 118 P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v--G~--------~P-~~~a~~p~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 118 PVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV--GN--------TP-TGVAVDPDGNKVYVTNSDDNTVSV 186 (381)
T ss_pred CceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec--CC--------Cc-ceEEECCCCCeEEEEecCCCeEEE
Confidence 35678889997666543 378899999888887776421 11 22 8899999999777765 7789999
Q ss_pred EEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee-eeccCCCeEEEEEcc
Q 000055 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS-ITCHEGGARSISVFD 2376 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s-l~gHs~~VtSLafsP 2376 (2548)
.|.+...... .........+.......++++|+.+.+....+.++.+...|... ...... ...-......+...|
T Consensus 187 i~~~~~~v~~--~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~--~~v~~~~~~~~~~~~~~v~~~p 262 (381)
T COG3391 187 IDTSGNSVVR--GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT--GNVTATDLPVGSGAPRGVAVDP 262 (381)
T ss_pred EeCCCcceec--cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC--ceEEEeccccccCCCCceeECC
Confidence 9976543221 00000011111223345899999776664222346888888865 222222 111111455677788
Q ss_pred CCCCCCCCCCEEEEE-eCCCcEEEEeC
Q 000055 2377 NDLGSGSVSPLIVTG-GKGGDVGIHDF 2402 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSG-S~DGtVrLWDL 2402 (2548)
. +..+.+. +..+.+.+-|.
T Consensus 263 ~-------g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 263 A-------GKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred C-------CCEEEEEecCCCeEEEEeC
Confidence 8 5565555 44588999994
No 385
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=72.43 E-value=4.7e+02 Score=37.98 Aligned_cols=78 Identities=21% Similarity=0.161 Sum_probs=49.1
Q ss_pred CeEEEEEEEcCCC------CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000055 2219 NISTRAFSSHPLR------PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2219 gV~V~~VsfSPdG------~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
...+.|+.++|-| +++++|..+..+.+--....-...+...+.+.. -...|.-..|-.|..+|.++..|
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~-----iPRSIl~~~~e~d~~yLlvalgd 604 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEI-----IPRSILLTTFEGDIHYLLVALGD 604 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCc-----cchheeeEEeeccceEEEEEcCC
Confidence 3447899888752 278888777766555443332222222222222 12567777777778999999999
Q ss_pred CcEEEEEcC
Q 000055 2293 GTVCTWQLE 2301 (2548)
Q Consensus 2293 GtVrVWDl~ 2301 (2548)
|.+..+.+.
T Consensus 605 G~l~~fv~d 613 (1096)
T KOG1897|consen 605 GALLYFVLD 613 (1096)
T ss_pred ceEEEEEEE
Confidence 998876554
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=72.19 E-value=1.6e+02 Score=41.04 Aligned_cols=108 Identities=12% Similarity=0.135 Sum_probs=57.4
Q ss_pred CCeEEEEEccCCCEEEEEe------CCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEecc-----
Q 000055 2272 ASISALQFDHYGHRFASAA------LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS----- 2340 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS------~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~S----- 2340 (2548)
..+.+.+.+|+|+.++... .|+.-.+|-...++.. .+. ..+....--.|+|+|..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~l-----t~g~~~t~PsWspDG~~lw~v~dg~~~~~ 422 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQV-----LEGHSLTRPSWSLDADAVWVVVDGNTVVR 422 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eee-----ecCCCCCCceECCCCCceEEEecCcceEE
Confidence 4688999999999887665 3555555554433211 111 122221111488998877766300
Q ss_pred ----CCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEE
Q 000055 2341 ----SNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGI 2399 (2548)
Q Consensus 2341 ----S~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrL 2399 (2548)
...+.+.+.++.. +.... ...+.|..+.|+|+ |..++.-. +|.|.+
T Consensus 423 v~~~~~~gql~~~~vd~--ge~~~---~~~g~Issl~wSpD-------G~RiA~i~-~g~v~V 472 (591)
T PRK13616 423 VIRDPATGQLARTPVDA--SAVAS---RVPGPISELQLSRD-------GVRAAMII-GGKVYL 472 (591)
T ss_pred EeccCCCceEEEEeccC--chhhh---ccCCCcCeEEECCC-------CCEEEEEE-CCEEEE
Confidence 0112222223322 11111 23567999999999 66655544 466655
No 387
>PHA02790 Kelch-like protein; Provisional
Probab=68.92 E-value=1.2e+02 Score=40.93 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=31.7
Q ss_pred CCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC---cEEEEe
Q 000055 2329 SSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG---DVGIHD 2401 (2548)
Q Consensus 2329 pdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG---tVrLWD 2401 (2548)
-+|.+.+.||.. ....+..||........+..+.........+.. + +.+.+.||.++ .+..||
T Consensus 317 ~~~~iYviGG~~-~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~-------g~IYviGG~~~~~~~ve~yd 382 (480)
T PHA02790 317 ANNKLYVVGGLP-NPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--N-------NVIYVIGGHSETDTTTEYLL 382 (480)
T ss_pred ECCEEEEECCcC-CCCceEEEECCCCeEEECCCCCCCCcccEEEEE--C-------CEEEEecCcCCCCccEEEEe
Confidence 467788887732 235688888765322233333211111112221 1 45777777554 355666
No 388
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=68.62 E-value=88 Score=40.39 Aligned_cols=103 Identities=13% Similarity=0.094 Sum_probs=56.4
Q ss_pred ccCCCEEEEE---------eCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEE
Q 000055 2280 DHYGHRFASA---------ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWD 2350 (2548)
Q Consensus 2280 SPdG~~LaSG---------S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWD 2350 (2548)
|||+++++.. +..+.+.++|++++....+.. ......-..++|+|+.++.. .++.|.+++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-------~~~~~~~~~~sP~g~~~~~v----~~~nly~~~ 69 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-------PPPKLQDAKWSPDGKYIAFV----RDNNLYLRD 69 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--------EETTBSEEEE-SSSTEEEEE----ETTEEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-------CccccccceeecCCCeeEEE----ecCceEEEE
Confidence 4667666653 224678899999875332211 01112223599999999998 589999998
Q ss_pred CCCCCCCcc-eeeec-------c---------CCCeEEEEEccCCCCCCCCCCEEEEEe-CCCcEEEEeC
Q 000055 2351 TLAPPTSSR-ASITC-------H---------EGGARSISVFDNDLGSGSVSPLIVTGG-KGGDVGIHDF 2402 (2548)
Q Consensus 2351 l~t~~~k~v-~sl~g-------H---------s~~VtSLafsP~dlg~gs~g~lLVSGS-~DGtVrLWDL 2402 (2548)
.... ... .+..+ - -+.-..+-|+|+ ++.|+... .+..|+.+.+
T Consensus 70 ~~~~--~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd-------~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 70 LATG--QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD-------SKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp STTS--EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TT-------SSEEEEEEEE-TTS-EEEE
T ss_pred CCCC--CeEEeccccceeEEcCccceeccccccccccceEECCC-------CCEEEEEEECCcCCceEEe
Confidence 7642 211 11112 0 112356889999 56666654 4555655554
No 389
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.91 E-value=15 Score=52.05 Aligned_cols=71 Identities=13% Similarity=0.278 Sum_probs=54.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+.+|.+++.|-.+|.|.+||..++...+.+..+... + ..|..+.+..++..+++++.-|. +|...
T Consensus 133 Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap------~-t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 133 VTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP------V-TGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc------c-ceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 689999999999999999999999999999888877653321 2 33445555556668888888887 67653
No 390
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=65.12 E-value=1.1e+02 Score=39.02 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=76.5
Q ss_pred EEEEEcCCCCEEEEEEC------C---CeEEEEEcC-CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000055 2223 RAFSSHPLRPFFLVGSS------N---THIYLWEFG-KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~------D---GsVrLWDl~-tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.....+|+|.+.++... + ..-.||.++ .+...+.+.. +...-+.|+||||++.|+.+...
T Consensus 114 ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~----------~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 114 NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD----------DLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC----------cEEecCceEECCCCCEEEEEeCC
Confidence 34445588887775333 1 112455555 4444444321 12345689999999888887665
Q ss_pred -CcEEEEEcCC--CcccccccCccceeccC--CcccEEEEcCCCCEEEEEeccCCC-CeEEEEECCCCCCCcceeeeccC
Q 000055 2293 -GTVCTWQLEV--GGRSNVRPMESCLCFSS--HAMDVSYITSSGSVIAAAGHSSNG-INVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2293 -GtVrVWDl~t--gk~i~i~p~~s~~t~~g--H~~~V~afSpdGslLATgG~SS~D-GtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
+.|..|++.. +..... .....+.. -.-+=.+...+|.+.+++. .+ +.|.+|+.. ++.+..+.-..
T Consensus 184 ~~~i~r~~~d~~~g~~~~~---~~~~~~~~~~G~PDG~~vDadG~lw~~a~---~~g~~v~~~~pd---G~l~~~i~lP~ 254 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGR---RGFVDFDEEPGLPDGMAVDADGNLWVAAV---WGGGRVVRFNPD---GKLLGEIKLPV 254 (307)
T ss_pred CCeEEEEecCcccCccCCc---ceEEEccCCCCCCCceEEeCCCCEEEecc---cCCceEEEECCC---CcEEEEEECCC
Confidence 7888887762 211100 00111111 1112234677888876543 33 389999875 56666666665
Q ss_pred CCeEEEEEccC
Q 000055 2367 GGARSISVFDN 2377 (2548)
Q Consensus 2367 ~~VtSLafsP~ 2377 (2548)
..+++++|--.
T Consensus 255 ~~~t~~~FgG~ 265 (307)
T COG3386 255 KRPTNPAFGGP 265 (307)
T ss_pred CCCccceEeCC
Confidence 77788887544
No 391
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=64.64 E-value=97 Score=37.89 Aligned_cols=99 Identities=20% Similarity=0.144 Sum_probs=64.4
Q ss_pred eEEEEEccCCCEEE-EEeCCCcEEEEE--cCCCcccccccC---ccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEE
Q 000055 2274 ISALQFDHYGHRFA-SAALDGTVCTWQ--LEVGGRSNVRPM---ESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2274 VtsVaFSPdG~~La-SGS~DGtVrVWD--l~tgk~i~i~p~---~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVr 2347 (2548)
-..++|+.+.+.+. +-+.+-+|..|| ..+|...+.+.. +..+.+.....+-.++..+|++.+++- +.++|.
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~---ng~~V~ 236 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF---NGGTVQ 236 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe---cCcEEE
Confidence 35688988766554 556677898888 556643321111 011112222223345666888877764 678999
Q ss_pred EEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000055 2348 VWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
..|..+ ++.+..+.-....|+|++|-..
T Consensus 237 ~~dp~t--GK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 237 KVDPTT--GKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EECCCC--CcEEEEEEcCCCceEEEEecCC
Confidence 999987 7888888878899999999655
No 392
>PHA03098 kelch-like protein; Provisional
Probab=63.73 E-value=1.6e+02 Score=40.14 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=15.1
Q ss_pred CCCEEEEEecc--CCCCeEEEEECCCC
Q 000055 2330 SGSVIAAAGHS--SNGINVVVWDTLAP 2354 (2548)
Q Consensus 2330 dGslLATgG~S--S~DGtVrIWDl~t~ 2354 (2548)
++.+++.||.. ..-..+..||..+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 67788888731 01134777887654
No 393
>PRK13616 lipoprotein LpqB; Provisional
Probab=61.67 E-value=2.6e+02 Score=38.99 Aligned_cols=157 Identities=11% Similarity=-0.009 Sum_probs=75.8
Q ss_pred EEEEEcCCCCEEEEEE------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc-E
Q 000055 2223 RAFSSHPLRPFFLVGS------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT-V 2295 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt-V 2295 (2548)
...+.+|+|+.++... .|+.-.||-...+.....+. .+ ...+.-.|+|+|..+.+...... +
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt--~g---------~~~t~PsWspDG~~lw~v~dg~~~~ 421 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL--EG---------HSLTRPSWSLDADAVWVVVDGNTVV 421 (591)
T ss_pred ccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee--cC---------CCCCCceECCCCCceEEEecCcceE
Confidence 5667779999887543 24444444333222222221 11 23777889999888877753312 2
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCC-CCCC-cc---eeee-ccCC
Q 000055 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLA-PPTS-SR---ASIT-CHEG 2367 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t-~~~k-~v---~sl~-gHs~ 2367 (2548)
++.+-.....+...+.............|. .|+|||..++... ++.|.+=-+.. ..+. .+ ..+. +-..
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~ 497 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQYALTNPREVGPGLGD 497 (591)
T ss_pred EEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence 222211111110000000000001122343 4899999888863 56776632221 1122 11 1122 2233
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeC
Q 000055 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDL 2402 (2548)
.+.++.|..+ +. |+++..++...+|.+
T Consensus 498 ~~~~l~W~~~-------~~-L~V~~~~~~~~v~~v 524 (591)
T PRK13616 498 TAVSLDWRTG-------DS-LVVGRSDPEHPVWYV 524 (591)
T ss_pred ccccceEecC-------CE-EEEEecCCCCceEEE
Confidence 4688899887 33 556666665556663
No 394
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=61.65 E-value=1.2e+02 Score=41.41 Aligned_cols=121 Identities=13% Similarity=0.092 Sum_probs=67.5
Q ss_pred CCCeEEEEEccC----CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE----EEcCCCCEEEEEeccCC
Q 000055 2271 LASISALQFDHY----GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS----YITSSGSVIAAAGHSSN 2342 (2548)
Q Consensus 2271 ~~~VtsVaFSPd----G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~----afSpdGslLATgG~SS~ 2342 (2548)
.+.|..+.|.|- ...++.....+.|.||.+.......-+......+.-+..-+|. -|+|....+++-. .
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT---~ 132 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT---A 132 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe---c
Confidence 366999999984 3456667778899999986221111011001111111111221 2788887777653 2
Q ss_pred CCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE-EEeCCCcEEEEeC
Q 000055 2343 GINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV-TGGKGGDVGIHDF 2402 (2548)
Q Consensus 2343 DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV-SGS~DGtVrLWDL 2402 (2548)
...-.+.+++....+....+ .-.+-|.|.+|..+ |+.|+ .-|..=.-++||-
T Consensus 133 ~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~D-------G~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKD-------GQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred CceeEeeeeeeCCceEEEec-cCCceEEEEEecCc-------CCEEEEEeCCeEEEEEecC
Confidence 22334556654323333444 44788999999998 55444 4444445678884
No 395
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.08 E-value=92 Score=41.78 Aligned_cols=144 Identities=10% Similarity=0.167 Sum_probs=89.7
Q ss_pred EEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC-------EEEEEeCCCcEEEEEcCCCccc
Q 000055 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH-------RFASAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2234 LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~-------~LaSGS~DGtVrVWDl~tgk~i 2306 (2548)
|.+|.....++--|++.|+.+...+. | ..|.-+.+.|+.+ .-+.|=.|..|.-||.+.....
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~----------~-~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~ 417 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKF----------E-DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN 417 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeec----------c-CCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence 33566667788889999998888754 2 3377777877643 1245667888999998744321
Q ss_pred ccccCccceeccCCcccEEEEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCC
Q 000055 2307 NVRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVS 2385 (2548)
Q Consensus 2307 ~i~p~~s~~t~~gH~~~V~afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g 2385 (2548)
. ......+.+... ....|+.. ..-+|++|+ .+|.|++||-.. .+....+.+-..+|..|..+.+ |
T Consensus 418 k-l~~~q~kqy~~k-~nFsc~aTT~sG~IvvgS---~~GdIRLYdri~--~~AKTAlPgLG~~I~hVdvtad-------G 483 (644)
T KOG2395|consen 418 K-LAVVQSKQYSTK-NNFSCFATTESGYIVVGS---LKGDIRLYDRIG--RRAKTALPGLGDAIKHVDVTAD-------G 483 (644)
T ss_pred e-eeeeeccccccc-cccceeeecCCceEEEee---cCCcEEeehhhh--hhhhhcccccCCceeeEEeecc-------C
Confidence 1 101011111111 12233322 223666664 899999999732 3445567788889999998888 6
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 000055 2386 PLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2386 ~lLVSGS~DGtVrLWDLR 2403 (2548)
.+|+. ..+.++.+-|++
T Consensus 484 Kwil~-Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 484 KWILA-TCKTYLLLIDTL 500 (644)
T ss_pred cEEEE-ecccEEEEEEEe
Confidence 66554 447788888865
No 396
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=60.34 E-value=18 Score=39.98 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=43.9
Q ss_pred hhHHHHhhc---cCChHHHHHHHHhhHHHHhhcchhHHHHHHHHh--cCChhHHHHHHHHHcCChhHHhhhhhh
Q 000055 1293 KPLVGFLSR---NFQEEKNKAAALKNAYVLLGRHQLELAIAFFLL--GGDAASAVTVCARNLGDVQLALVICRL 1361 (2548)
Q Consensus 1293 ~~~~~Fl~n---dF~~~rwr~aA~KNAy~Ll~k~ry~~AaaFFLL--ag~~~dav~V~~~~l~D~qLA~~i~Rl 1361 (2548)
.++.+||.+ .|+-+ .|..+..++++. .+++||+ .|..++||++++++++|+++|+-.|+-
T Consensus 57 ~~ll~~l~~~~~~yd~~--------~~~~~c~~~~l~-~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 57 QKEIERLDNKSNHYDIE--------KVGKLCEKAKLY-EEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHHhccccCCHH--------HHHHHHHHcCcH-HHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHh
Confidence 457899883 44433 466777777664 3444444 367889999999999999999988874
No 397
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=59.26 E-value=3e+02 Score=35.24 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=69.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc-
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL- 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl- 2300 (2548)
+..+.-+++|.+++++..-....-||-....-...-+. ....|.+|.|.|++...+.+ ..|.|+.=+.
T Consensus 147 ~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~----------~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 147 INDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN----------SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE------------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred eEeEEECCCCcEEEEECcccEEEEecCCCccceEEccC----------ccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence 46667789999998886666566777543211111110 13789999999998866644 8888887762
Q ss_pred CCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee---eccCCCeEEEEEc
Q 000055 2301 EVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI---TCHEGGARSISVF 2375 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl---~gHs~~VtSLafs 2375 (2548)
.....-. .+. .........+. ++.+++...++|| .|++.. .... ++.-... ..-......|.|.
T Consensus 216 ~~~~~w~-~~~---~~~~~~~~~~ld~a~~~~~~~wa~gg----~G~l~~-S~Dg--GktW~~~~~~~~~~~n~~~i~f~ 284 (302)
T PF14870_consen 216 DDGETWS-EPI---IPIKTNGYGILDLAYRPPNEIWAVGG----SGTLLV-STDG--GKTWQKDRVGENVPSNLYRIVFV 284 (302)
T ss_dssp TEEEEE----B----TTSS--S-EEEEEESSSS-EEEEES----TT-EEE-ESST--TSS-EE-GGGTTSSS---EEEEE
T ss_pred CCccccc-ccc---CCcccCceeeEEEEecCCCCEEEEeC----CccEEE-eCCC--CccceECccccCCCCceEEEEEc
Confidence 1111000 000 00111112233 4777788888775 454433 2221 2222111 1224567888887
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEE
Q 000055 2376 DNDLGSGSVSPLIVTGGKGGDVGIH 2400 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLW 2400 (2548)
+++ .-..-+.+|.+--|
T Consensus 285 ~~~--------~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 285 NPD--------KGFVLGQDGVLLRY 301 (302)
T ss_dssp ETT--------EEEEE-STTEEEEE
T ss_pred CCC--------ceEEECCCcEEEEe
Confidence 663 44555668876544
No 398
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=57.64 E-value=9.7 Score=45.69 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=24.7
Q ss_pred cceeEEeecCCCCcccceeeecCCeEEEE
Q 000055 95 LPVTSISWSPETPSIGQLAAASENCIFVF 123 (2548)
Q Consensus 95 ~~V~~v~~s~~~~~~G~iAa~~~n~v~if 123 (2548)
.++.|++||+.| |.|+.+.+|++.||
T Consensus 135 ~~p~ciaCC~~t---G~LlVg~~~~l~lf 160 (215)
T PF14761_consen 135 EPPLCIACCPVT---GNLLVGCGNKLVLF 160 (215)
T ss_pred CCCCEEEecCCC---CCEEEEcCCEEEEE
Confidence 378999999999 99999999999999
No 399
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=53.09 E-value=1.8e+02 Score=41.51 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=51.5
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECC----------CCcEEEEecccccccccccCcccCCCCceeecEEEEEEc
Q 000055 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAK----------AAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVV 2523 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~----------Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafS 2523 (2548)
.-.|..|.++|+|++|+-.|..|.+.+ .+. .|+........+-+..| |.......|.++.|+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~-------~~~~~~~~i~qv~Wh 155 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERF-------FTSNSSLEIKQVRWH 155 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhh-------ccCCCCceEEEEEEc
Confidence 347899999999999999988764433 332 11111111001111111 111222457888999
Q ss_pred CCe-----EEEEECCCcEEEEECCCC
Q 000055 2524 SRG-----FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2524 PdG-----LaSGS~DGtIrIWDL~sg 2544 (2548)
|.+ |+.=..|+++|+||+...
T Consensus 156 P~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 156 PWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCCCCCeEEEEecCCEEEEEecCCC
Confidence 986 888899999999999753
No 400
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=52.68 E-value=6.7e+02 Score=32.94 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=64.9
Q ss_pred CeEEEEEccCCCEEEEE-eCCC----cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccC--C---
Q 000055 2273 SISALQFDHYGHRFASA-ALDG----TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS--N--- 2342 (2548)
Q Consensus 2273 ~VtsVaFSPdG~~LaSG-S~DG----tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS--~--- 2342 (2548)
.+....++|+|++++.+ +..| ++++.|+++|+.+.- .+......-..|.++++.|+...... .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-------~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-------GIENPKFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-------EEEEEESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-------cccccccceEEEeCCCCEEEEEEeCccccccc
Confidence 34567889999998866 4444 699999998853321 11222222145788888766654221 1
Q ss_pred ---CCeEEEEECCCCCCCcceeeeccCCC--eEEEEEccCCCCCCCCCCEEEE-EeCCC---cEEEEeC
Q 000055 2343 ---GINVVVWDTLAPPTSSRASITCHEGG--ARSISVFDNDLGSGSVSPLIVT-GGKGG---DVGIHDF 2402 (2548)
Q Consensus 2343 ---DGtVrIWDl~t~~~k~v~sl~gHs~~--VtSLafsP~dlg~gs~g~lLVS-GS~DG---tVrLWDL 2402 (2548)
...|+.|.+.++.......+...... ...+..+++ +++++. ..... .+.+.|+
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d-------~~~l~i~~~~~~~~s~v~~~d~ 259 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKD-------GRYLFISSSSGTSESEVYLLDL 259 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TT-------SSEEEEEEESSSSEEEEEEEEC
T ss_pred CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCc-------ccEEEEEEEccccCCeEEEEec
Confidence 34588888876433323444443333 456777776 555554 33333 3666664
No 401
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=51.94 E-value=5.6e+02 Score=31.82 Aligned_cols=34 Identities=12% Similarity=0.272 Sum_probs=28.8
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000055 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
++.+-+|.+.++.-..|+|...|..+|+.+.+++
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik 250 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK 250 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE
Confidence 4446688888888888999999999999999884
No 402
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=51.32 E-value=7.1e+02 Score=33.10 Aligned_cols=93 Identities=11% Similarity=0.199 Sum_probs=43.7
Q ss_pred EEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC-----cEEEEEcCCCcccccccCccceec
Q 000055 2243 IYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-----TVCTWQLEVGGRSNVRPMESCLCF 2317 (2548)
Q Consensus 2243 VrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG-----tVrVWDl~tgk~i~i~p~~s~~t~ 2317 (2548)
|.--|+.+|+....+.. ...+..+.|+|....+++=+..| .-|+|-+++..... .+ +
T Consensus 170 i~~idl~tG~~~~v~~~-----------~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-~~------v 231 (386)
T PF14583_consen 170 IFTIDLKTGERKVVFED-----------TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-KK------V 231 (386)
T ss_dssp EEEEETTT--EEEEEEE-----------SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EE------S
T ss_pred EEEEECCCCceeEEEec-----------CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-ee------e
Confidence 34446667765555432 26788899999655454443333 24788776543221 11 1
Q ss_pred cCCc-ccEE---EEcCCCCEEEEEecc--CCCCeEEEEECCC
Q 000055 2318 SSHA-MDVS---YITSSGSVIAAAGHS--SNGINVVVWDTLA 2353 (2548)
Q Consensus 2318 ~gH~-~~V~---afSpdGslLATgG~S--S~DGtVrIWDl~t 2353 (2548)
..+. ..++ +|.+||..|..-++- ..+..|.-+|+.+
T Consensus 232 ~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 232 HRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp S---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred ecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence 1222 2222 489999877664321 1344667777765
No 403
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=50.86 E-value=9.2 Score=52.78 Aligned_cols=152 Identities=14% Similarity=0.220 Sum_probs=80.8
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEE-----------EEccCCCEEEEEeCCCcEEEE
Q 000055 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISAL-----------QFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsV-----------aFSPdG~~LaSGS~DGtVrVW 2298 (2548)
+.-++..+-.+++|++..+++... ..+.+|. ..++.+ ..+|||..|+.++.||.++.|
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs-------~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR----SLFRSHS-------QRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH----HHHHhcC-------CCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 456777788899999988776433 1122222 222222 268999999999999999999
Q ss_pred EcCCCcccccccCccceeccCCcc--cEEEEcCC--------C--CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC
Q 000055 2299 QLEVGGRSNVRPMESCLCFSSHAM--DVSYITSS--------G--SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~--~V~afSpd--------G--slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
.+--...... .+......|+. .|++...+ + .+++++. -.++.+++|.... .+|. +..--
T Consensus 263 Qiyi~g~~~~---rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt--d~nre~k~w~~a~--w~Cl--l~~~~ 333 (1283)
T KOG1916|consen 263 QIYITGKIVH---RCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTT--DVNREEKFWAEAP--WQCL--LDKLI 333 (1283)
T ss_pred eeeeeccccH---hhhhccCCCCCCCceeeeeccccccCCccceeEEEEecc--cCCcceeEeeccc--hhhh--hhhcc
Confidence 9753221111 12222333431 33322111 1 2344443 2567789998753 4444 22223
Q ss_pred CCeEEEEEccCCCCCCC------CCCEEEEEeCCCcEEEEeCC
Q 000055 2367 GGARSISVFDNDLGSGS------VSPLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs------~g~lLVSGS~DGtVrLWDLR 2403 (2548)
+.|..|. |.+...+. --..+++-+-||+|.+|--|
T Consensus 334 d~v~iV~--p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 334 DGVQIVG--PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred cceEeec--CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 4455554 33200000 01134556678889988743
No 404
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=50.68 E-value=8.6e+02 Score=33.62 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=44.3
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCC-CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccc
Q 000055 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPP-YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~-~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i 2306 (2548)
+..+.+++.++.|+-.|..+|+.+-.+........... .....-..++. .+..++.++.||.|...|.++|+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEE
Confidence 45667777788899999999988777643111000000 00000011122 2456788889999999999998754
No 405
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=50.60 E-value=6.2e+02 Score=32.68 Aligned_cols=198 Identities=12% Similarity=0.028 Sum_probs=98.2
Q ss_pred EEcCCCCEEEEEeccCCCCeEEEEECCC-----CCCCcceeeec-----cCCCeEEEEEccCCCC-----CCCCCCEEEE
Q 000055 2326 YITSSGSVIAAAGHSSNGINVVVWDTLA-----PPTSSRASITC-----HEGGARSISVFDNDLG-----SGSVSPLIVT 2390 (2548)
Q Consensus 2326 afSpdGslLATgG~SS~DGtVrIWDl~t-----~~~k~v~sl~g-----Hs~~VtSLafsP~dlg-----~gs~g~lLVS 2390 (2548)
+++|.+.+-++.. ..+...+||... .....+..+.. .....+.+.|+...-- .......++.
T Consensus 29 a~~p~~~~WVadn---gT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 29 SYRPGGPFWVANT---GTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred EecCCCCEEEecC---CcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 4788887766653 578899999861 11122333331 2346777887754200 0001235788
Q ss_pred EeCCCcEEEEeCCccccC--ceeeeecCCCCCCCccccccccCCC--CCC---ccCCCCCceEEEcccC-------CCCC
Q 000055 2391 GGKGGDVGIHDFRYIATG--KTKKHKHSDRGGSSINTCAHADAQT--GSG---SKPGDQNGMLWYIPKA-------HLGS 2456 (2548)
Q Consensus 2391 GS~DGtVrLWDLR~l~TG--k~l~tl~~~~~~s~~~~~~vafSpd--Gk~---v~s~D~sv~Iwdi~~g-------H~~~ 2456 (2548)
++.||+|.-|.-..-.+. .....+ +.......+..+++... +.. .--..+++.++|..-. ...+
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~--d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVV--DASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEE--ccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 899999999993211110 011111 11122333444444433 222 1223445555552100 0000
Q ss_pred -------------------EEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000055 2457 -------------------VTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2457 -------------------VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
|+-..-++++..=+.|..-|.|-+||.. |++++++. +++..++ -
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~a---------------s~g~LNa-P 246 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVA---------------SSGRLNA-P 246 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEec---------------cCCcccC-C
Confidence 1111112222222334445789999974 88888772 2222222 3
Q ss_pred EEEEEcCCe--------EEEEECCCcEEEEECCCCc
Q 000055 2518 TDIQVVSRG--------FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2518 tsLafSPdG--------LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+.|+..|.. |+---.||+|..+|..++.
T Consensus 247 WG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 247 WGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred ceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 566666543 4444579999999987654
No 406
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.32 E-value=6.6e+02 Score=32.21 Aligned_cols=164 Identities=6% Similarity=-0.010 Sum_probs=101.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.|+|+.+.|++......-.|+=...|+.+.++-... ...--.|.+..+|.+.++--.++.+.++.++
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g---------~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG---------FSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc---------cCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 6899999999999988777777777767888888763211 1334567777788888888888999888887
Q ss_pred CCcccc-cccC-ccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCC-cceeeeccC-------CCe
Q 000055 2302 VGGRSN-VRPM-ESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS-SRASITCHE-------GGA 2369 (2548)
Q Consensus 2302 tgk~i~-i~p~-~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k-~v~sl~gHs-------~~V 2369 (2548)
.+.... .... -+.....+..... .++++..+.+..+- .-+-+.|+.+...... .++....++ ..|
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK---Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK---ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE---ccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 553221 1110 0111111112222 35888777777763 4555666665432111 122222222 246
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCC
Q 000055 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR 2403 (2548)
.++.|++.. +.++|-+..++.+.-.|..
T Consensus 236 Sgl~~~~~~------~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 236 SGLEFNAIT------NSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ccceecCCC------CcEEEEecCCceEEEEecC
Confidence 677888774 7789999899988888843
No 407
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.30 E-value=6.9e+02 Score=32.08 Aligned_cols=212 Identities=10% Similarity=0.099 Sum_probs=109.6
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEE
Q 000055 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWD 2350 (2548)
Q Consensus 2271 ~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWD 2350 (2548)
...|.++.|+|+.+.|++......-.|+=-..|+.+...|..- + .-...|. +..+|+++++-- .++.+.++.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g---~-~DpE~Ie-yig~n~fvi~dE---R~~~l~~~~ 156 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG---F-SDPETIE-YIGGNQFVIVDE---RDRALYLFT 156 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc---c-CChhHeE-EecCCEEEEEeh---hcceEEEEE
Confidence 3669999999999999888887777777666666544333211 1 1111232 333455555432 677777777
Q ss_pred CCCCCCCc--------ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCC
Q 000055 2351 TLAPPTSS--------RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS 2422 (2548)
Q Consensus 2351 l~t~~~k~--------v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~ 2422 (2548)
+....... +......+.+.-.++|.|. ...|..+=...-+.||.+......-....
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~-------~~~l~~aKEr~P~~I~~~~~~~~~l~~~~--------- 220 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPV-------DHRLFVAKERNPIGIFEVTQSPSSLSVHA--------- 220 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCC-------CceEEEEEccCCcEEEEEecCCccccccc---------
Confidence 65321110 1111112567888999998 45666666666677776321000000000
Q ss_pred ccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccccccccc
Q 000055 2423 INTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTF 2501 (2548)
Q Consensus 2423 ~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsf 2501 (2548)
... -..+..+ .-..|.++.|++. +.+++-+.+++.+.-.|.. |+.+..+......
T Consensus 221 ------~~~------~~~~~~~--------f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~--- 276 (316)
T COG3204 221 ------SLD------PTADRDL--------FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGN--- 276 (316)
T ss_pred ------ccC------cccccce--------EeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCC---
Confidence 000 0000001 1235678889875 4555556667777777764 5555555211111
Q ss_pred ccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcE
Q 000055 2502 LQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSV 2536 (2548)
Q Consensus 2502 l~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtI 2536 (2548)
.|-+..|.. .-.++..++| |.-.|.-+-.
T Consensus 277 -----~gL~~dipq-aEGiamDd~g~lYIvSEPnlf 306 (316)
T COG3204 277 -----HGLSSDIPQ-AEGIAMDDDGNLYIVSEPNLF 306 (316)
T ss_pred -----CCCcccCCC-cceeEECCCCCEEEEecCCcc
Confidence 222222322 2345777777 5555554433
No 408
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.95 E-value=2.2e+02 Score=35.89 Aligned_cols=55 Identities=9% Similarity=0.062 Sum_probs=37.0
Q ss_pred EcCCCCEEEEE-----ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000055 2227 SHPLRPFFLVG-----SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2227 fSPdG~~LASG-----S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
|||||.+|... ...|.|-|||...+ ...+.+++.| .-.-..+.|.+||+.++.+.
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~-------GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTH-------GIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccC-------CcCcceeEEecCCcEEEEeC
Confidence 67999988864 33478999998743 2233333332 23456788999999988764
No 409
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=47.14 E-value=41 Score=30.87 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=26.4
Q ss_pred CCEEEEEEeCCC---CEEEEEeCCCcEEEEECCC
Q 000055 2455 GSVTRISTVPNT---SLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2455 ~~VtsLafSPdG---~~LaSGS~DGtIrIWDl~T 2485 (2548)
++|.++.|+|.. ++|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999854 5888888889999999985
No 410
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=47.04 E-value=7e+02 Score=31.54 Aligned_cols=198 Identities=12% Similarity=0.091 Sum_probs=102.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCC--cEEEEEcCCCcccccccCccceeccC--CcccEEEEcCCCCEEEEEeccCCCCeEE
Q 000055 2272 ASISALQFDHYGHRFASAALDG--TVCTWQLEVGGRSNVRPMESCLCFSS--HAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DG--tVrVWDl~tgk~i~i~p~~s~~t~~g--H~~~V~afSpdGslLATgG~SS~DGtVr 2347 (2548)
.-...+.|..+|.++-+.+.-| .|+.+|+.+++.....+ +.. ....++.+ ++++..-.= .++...
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~------l~~~~FgEGit~~--~d~l~qLTW---k~~~~f 113 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVP------LPPRYFGEGITIL--GDKLYQLTW---KEGTGF 113 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-------TTT--EEEEEEE--TTEEEEEES---SSSEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEE------CCccccceeEEEE--CCEEEEEEe---cCCeEE
Confidence 4466788878888888888877 88899999886433221 111 11122222 223322222 789999
Q ss_pred EEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccc
Q 000055 2348 VWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCA 2427 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~ 2427 (2548)
+||..+ .+.+..+.- .+.=+.++.. +..|+.......+.++| ..+-+..+.+.
T Consensus 114 ~yd~~t--l~~~~~~~y-~~EGWGLt~d---------g~~Li~SDGS~~L~~~d---P~~f~~~~~i~------------ 166 (264)
T PF05096_consen 114 VYDPNT--LKKIGTFPY-PGEGWGLTSD---------GKRLIMSDGSSRLYFLD---PETFKEVRTIQ------------ 166 (264)
T ss_dssp EEETTT--TEEEEEEE--SSS--EEEEC---------SSCEEEE-SSSEEEEE----TTT-SEEEEEE------------
T ss_pred EEcccc--ceEEEEEec-CCcceEEEcC---------CCEEEEECCccceEEEC---CcccceEEEEE------------
Confidence 999975 556666543 3455777732 33555555577899999 44444444431
Q ss_pred cccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCccc
Q 000055 2428 HADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2428 vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~ 2507 (2548)
+.+- ..--..++.+.+. +|...|=.=....|..-|..+|+.+..+.-..-.... ...
T Consensus 167 ------------------V~~~-g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~---~~~ 223 (264)
T PF05096_consen 167 ------------------VTDN-GRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEV---GRD 223 (264)
T ss_dssp -------------------EET-TEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHH---TST
T ss_pred ------------------EEEC-CEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcc---ccc
Confidence 0000 0011245556664 5555554445567888899999998877311000000 000
Q ss_pred CCCCceeecEEEEEEcCCe---EEEE
Q 000055 2508 GFGGVVRAGVTDIQVVSRG---FLSC 2530 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG---LaSG 2530 (2548)
.-...-..+...||++|.+ ++||
T Consensus 224 ~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 224 KSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TST--TTS-EEEEEEETTTTEEEEEE
T ss_pred ccccccCCeeEeEeEeCCCCEEEEEe
Confidence 0000001346778998877 6676
No 411
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=46.95 E-value=1.9e+02 Score=40.41 Aligned_cols=110 Identities=15% Similarity=0.240 Sum_probs=65.4
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEc--cCCCEEEEEeCCCcEEEEEcCCCccc
Q 000055 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFD--HYGHRFASAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFS--PdG~~LaSGS~DGtVrVWDl~tgk~i 2306 (2548)
.-++..++-+....+.|||...+.....- .+ ...+.|.++.|. |+|..+++.|..+.|.++.-......
T Consensus 39 s~~k~a~V~~~~~~LtIWD~~~~~lE~~~-~f--------~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 39 SIKKIAVVDSSRSELTIWDTRSGVLEYEE-SF--------SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred ccCcEEEEECCCCEEEEEEcCCcEEEEee-ee--------cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 44555555555667999999887632221 11 123889999995 58999999999999998854211100
Q ss_pred c----cccCccc--eeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECC
Q 000055 2307 N----VRPMESC--LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2548)
Q Consensus 2307 ~----i~p~~s~--~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~ 2352 (2548)
. ..+.... ..+..|.-.-..|.++|.+++.+| +.+.|+|-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-----Nqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-----NQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC-----CEEEEECCC
Confidence 0 0111111 112333322234778888887765 678888754
No 412
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=45.12 E-value=1.2e+03 Score=33.74 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=52.5
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe----cccccccccccCcccCCCCceeecEEEEEEcCCe--
Q 000055 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW----SKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-- 2526 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL----~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-- 2526 (2548)
..+.|.+++...-+.+++..-.||+|.+.|-.+.+.+... .....-.+.++..|.- ..+ ..+..++|||++
T Consensus 258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~f--p~~-~~~~~vafSPt~c~ 334 (753)
T PF11635_consen 258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHF--PCI-QPPLHVAFSPTMCS 334 (753)
T ss_pred cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCcccccccccccccc--ccC-CCCceEEECcccce
Confidence 3567888888888889999999999999999887766544 1111111111111111 111 123346899999
Q ss_pred EEEEECCCcEE
Q 000055 2527 FLSCGGDGSVK 2537 (2548)
Q Consensus 2527 LaSGS~DGtIr 2537 (2548)
++.-..||.+.
T Consensus 335 ~v~~~~~~~~~ 345 (753)
T PF11635_consen 335 LVQIDEDGKTK 345 (753)
T ss_pred EEEEecCCCce
Confidence 78888888855
No 413
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=42.22 E-value=79 Score=44.48 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=84.7
Q ss_pred CeEEEEEcC--CCceeEEEeccCCCCCCCCCCCCCeEEEEEc---cCCCEEEEEeCCCcEEEEEcCCCcccccccCccce
Q 000055 2241 THIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFD---HYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCL 2315 (2548)
Q Consensus 2241 GsVrLWDl~--tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFS---PdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~ 2315 (2548)
|...|||++ .|+....+...... ++. ..+.-|.|. ++..++..+..+|+|++-.+++....
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~----p~g-s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~--------- 218 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPIT----PYG-SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS--------- 218 (1283)
T ss_pred hhhheeehHhhccccccceEEeecC----cCC-CCcceeeecccccccceeeeccCCCceeEeeechHHHH---------
Confidence 567888887 45544444332211 111 223444554 46677777888899998877654321
Q ss_pred eccCCcccE-------------EEEcCCCCEEEEEeccCCCCeEEEEECCCCC---CCcceeeeccCC-CeEEEEEccCC
Q 000055 2316 CFSSHAMDV-------------SYITSSGSVIAAAGHSSNGINVVVWDTLAPP---TSSRASITCHEG-GARSISVFDND 2378 (2548)
Q Consensus 2316 t~~gH~~~V-------------~afSpdGslLATgG~SS~DGtVrIWDl~t~~---~k~v~sl~gHs~-~VtSLafsP~d 2378 (2548)
.+.+|...+ ..++|||..++.+. .||.++.|.+.... ..|.+..+.|++ +-.|..++...
T Consensus 219 l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~---~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~ 295 (1283)
T KOG1916|consen 219 LFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAI---SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQE 295 (1283)
T ss_pred HHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEee---cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeecccc
Confidence 133343322 23799999999986 89999988865321 235666777773 33333333321
Q ss_pred CCC--CCCCCEEEEEe-CCCcEEEEeCCccccCcee
Q 000055 2379 LGS--GSVSPLIVTGG-KGGDVGIHDFRYIATGKTK 2411 (2548)
Q Consensus 2379 lg~--gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l 2411 (2548)
.-. .++..++++++ .+.-+++|. ....+|+
T Consensus 296 ~~~v~i~~w~~~Itttd~nre~k~w~---~a~w~Cl 328 (1283)
T KOG1916|consen 296 ILVVSIGKWVLRITTTDVNREEKFWA---EAPWQCL 328 (1283)
T ss_pred ccCCccceeEEEEecccCCcceeEee---ccchhhh
Confidence 100 11223455554 455788888 4444444
No 414
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=40.31 E-value=7.8e+02 Score=30.57 Aligned_cols=155 Identities=15% Similarity=0.126 Sum_probs=80.1
Q ss_pred CeEEEEEccCCCEEEEEe-CCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEE
Q 000055 2273 SISALQFDHYGHRFASAA-LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2273 ~VtsVaFSPdG~~LaSGS-~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
.+.+.+.++++..++... .++.-.+|-...+...... ..+. .+. +|++++.+.+... .+...+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-------~~g~--~l~~PS~d~~g~~W~v~~---~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-------LTGG--SLTRPSWDPDGWVWTVDD---GSGGVRVV 92 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-------ccCC--ccccccccCCCCEEEEEc---CCCceEEE
Confidence 688999999998877655 3333334433333211110 1222 232 4788877766653 44555555
Q ss_pred E-CCCCCCCcceeeec-cCCCeEEEEEccCCCCCCCCCCEEEEEe---CCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000055 2350 D-TLAPPTSSRASITC-HEGGARSISVFDNDLGSGSVSPLIVTGG---KGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2350 D-l~t~~~k~v~sl~g-Hs~~VtSLafsP~dlg~gs~g~lLVSGS---~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
. ...+....+..-.. -.+.|..+.++|+ |..++.-. .++.|.+=-+..-..+.. ..+
T Consensus 93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpD-------G~RvA~v~~~~~~~~v~va~V~r~~~g~~-~~l---------- 154 (253)
T PF10647_consen 93 RDSASGTGEPVEVDWPGLRGRITALRVSPD-------GTRVAVVVEDGGGGRVYVAGVVRDGDGVP-RRL---------- 154 (253)
T ss_pred EecCCCcceeEEecccccCCceEEEEECCC-------CcEEEEEEecCCCCeEEEEEEEeCCCCCc-cee----------
Confidence 3 22221222111111 1128999999999 55544333 456666655321111200 000
Q ss_pred ccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCC
Q 000055 2425 TCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDG 2476 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DG 2476 (2548)
.....+.......++.++|.+++.+++.+...+
T Consensus 155 -------------------~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 155 -------------------TGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred -------------------ccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 000111123456889999999998887776543
No 415
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.27 E-value=99 Score=37.61 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=47.0
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCC---CCceeecEEEEEEcCCe--EEEEECCCcE
Q 000055 2462 TVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGF---GGVVRAGVTDIQVVSRG--FLSCGGDGSV 2536 (2548)
Q Consensus 2462 fSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH---~~~V~a~VtsLafSPdG--LaSGS~DGtI 2536 (2548)
+..++.+|++-+.+|.+++||+.+++.+..-. + +.+.+... +......|..+.++.+| +++-+ +|..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~------S-i~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~ 89 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV------S-IAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDS 89 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc------c-HHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCE
Confidence 45578999999999999999999988764220 1 11112110 00122346777899999 65554 4778
Q ss_pred EEEECC
Q 000055 2537 KLIQLE 2542 (2548)
Q Consensus 2537 rIWDL~ 2542 (2548)
+.|+.+
T Consensus 90 y~y~~~ 95 (219)
T PF07569_consen 90 YSYSPD 95 (219)
T ss_pred EEeccc
Confidence 888764
No 416
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=39.75 E-value=69 Score=29.49 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=26.9
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCC
Q 000055 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR 2403 (2548)
+.|.++.|+|.. ....+|+-+-.-|.|.++|+|
T Consensus 1 GAvR~~kFsP~~----~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEP----GGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCC----CcccEEEEEccCCeEEEEEcc
Confidence 468999999874 012699999999999999987
No 417
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=36.76 E-value=6.1e+02 Score=36.20 Aligned_cols=161 Identities=16% Similarity=0.220 Sum_probs=87.8
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeE------EEeccCCCC------C-CCCCCCCCeEEEEEcc--CCCEEEEEeCCCcE
Q 000055 2231 RPFFLVGSSNTHIYLWEFGKDKATA------TYGVLPAAN------V-PPPYALASISALQFDH--YGHRFASAALDGTV 2295 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~------t~~~l~ghs------~-~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtV 2295 (2548)
+++++++. .+.|.||+.+.-.... .+...+.-. . ..+ -...|+.|.... +...|+.|..||.|
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG~V 126 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDGDV 126 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCeeEEEEEecCCeE
Confidence 67777755 6789999987533211 111100000 0 000 123466665543 45678999999999
Q ss_pred EEEEcCCCc---------------ccccccCccceeccCCcccEE--EEc--CCCCEEEEEeccCCCCeEEEEECCCCCC
Q 000055 2296 CTWQLEVGG---------------RSNVRPMESCLCFSSHAMDVS--YIT--SSGSVIAAAGHSSNGINVVVWDTLAPPT 2356 (2548)
Q Consensus 2296 rVWDl~tgk---------------~i~i~p~~s~~t~~gH~~~V~--afS--pdGslLATgG~SS~DGtVrIWDl~t~~~ 2356 (2548)
.+|.+++-- ...+.|. ..+. -...++ ++. ...++||++. +...|.||-......
T Consensus 127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~---f~~~-v~~SaWGLdIh~~~~~rlIAVSs---Ns~~VTVFaf~l~~~ 199 (717)
T PF08728_consen 127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPF---FHLR-VGASAWGLDIHDYKKSRLIAVSS---NSQEVTVFAFALVDE 199 (717)
T ss_pred EEEEHHHHHHHHHhhccccccccccccCCCC---eEee-cCCceeEEEEEecCcceEEEEec---CCceEEEEEEecccc
Confidence 999863210 0011111 1111 111222 233 4556777763 667788776543211
Q ss_pred Cc-ceeeeccCCCeEEEEEccCCCCCCCCCC-EEEEEeCCCcEEEEeC
Q 000055 2357 SS-RASITCHEGGARSISVFDNDLGSGSVSP-LIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2357 k~-v~sl~gHs~~VtSLafsP~dlg~gs~g~-lLVSGS~DGtVrLWDL 2402 (2548)
+. ...-..|...|-+|+|.+++.+ +.|. .+++++-.|.+-+|++
T Consensus 200 r~~~~~s~~~~hNIP~VSFl~~~~d--~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 200 RFYHVPSHQHSHNIPNVSFLDDDLD--PNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccCCCeeEeecCCCC--CccceEEEEEeccCcEEEEEE
Confidence 21 1111136778999999888532 2233 7888999999999987
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=35.96 E-value=1.6e+03 Score=32.46 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=45.6
Q ss_pred EcCCCCEEEEEeccCCCCeEEEEECCCC--------CCCc---ceee--------eccCCCeEEEEEccCCCCCCCCCCE
Q 000055 2327 ITSSGSVIAAAGHSSNGINVVVWDTLAP--------PTSS---RASI--------TCHEGGARSISVFDNDLGSGSVSPL 2387 (2548)
Q Consensus 2327 fSpdGslLATgG~SS~DGtVrIWDl~t~--------~~k~---v~sl--------~gHs~~VtSLafsP~dlg~gs~g~l 2387 (2548)
++++|++++..| . ..|.|-.+-.. .++. .+++ ..+...|..+.|+|.. ..+..
T Consensus 92 ~n~~g~~lal~G---~-~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s----~~~~~ 163 (717)
T PF10168_consen 92 LNPTGSLLALVG---P-RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS----ESDSH 163 (717)
T ss_pred ECCCCCEEEEEc---C-CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC----CCCCe
Confidence 789999999987 3 44444443210 0111 1111 1234578999999983 33678
Q ss_pred EEEEeCCCcEEEEeCCc
Q 000055 2388 IVTGGKGGDVGIHDFRY 2404 (2548)
Q Consensus 2388 LVSGS~DGtVrLWDLR~ 2404 (2548)
|+.=..|+++|+||+..
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 88889999999999753
No 419
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=35.82 E-value=7.5 Score=50.76 Aligned_cols=146 Identities=12% Similarity=0.160 Sum_probs=96.7
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE-EeCCCcEEEEEcC
Q 000055 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDGTVCTWQLE 2301 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS-GS~DGtVrVWDl~ 2301 (2548)
....|-|.+.-++.++.+..|..||-... ..... .-++...+++|..++..++. +-..+.+.+||+.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~-----------n~tg~aldm~wDkegdvlavlAek~~piylwd~n 105 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL-----------NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN 105 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc-eeccc-----------CCchhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence 45566687777999999999999984432 22211 01266778999988876654 4567899999998
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
+....... .-..|......|++.+..++.+. ..|.+.|++..+ .+.+..+-.|...++++++.+.+
T Consensus 106 ~eytqqLE------~gg~~s~sll~wsKg~~el~ig~---~~gn~viynhgt--sR~iiv~Gkh~RRgtq~av~lEd--- 171 (615)
T KOG2247|consen 106 SEYTQQLE------SGGTSSKSLLAWSKGTPELVIGN---NAGNIVIYNHGT--SRRIIVMGKHQRRGTQIAVTLED--- 171 (615)
T ss_pred hhhHHHHh------ccCcchHHHHhhccCCccccccc---cccceEEEeccc--hhhhhhhcccccceeEEEecccc---
Confidence 65321110 01123334445788777777764 789999999865 33333333499999999999886
Q ss_pred CCCCCEEEEEeCCCcEEE
Q 000055 2382 GSVSPLIVTGGKGGDVGI 2399 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrL 2399 (2548)
+.+.++.|..+.+
T Consensus 172 -----~vil~dcd~~L~v 184 (615)
T KOG2247|consen 172 -----YVILCDCDNTLSV 184 (615)
T ss_pred -----eeeecCcHHHHHH
Confidence 7777776665443
No 420
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=35.51 E-value=6.7e+02 Score=32.74 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=38.8
Q ss_pred EEEEEEcCCCCEEEEEE-----------CCC-eEEEEEcCC--Cce--eEEEeccCCCCCCCCCCCCCeEEEEEccCCCE
Q 000055 2222 TRAFSSHPLRPFFLVGS-----------SNT-HIYLWEFGK--DKA--TATYGVLPAANVPPPYALASISALQFDHYGHR 2285 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS-----------~DG-sVrLWDl~t--g~~--l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~ 2285 (2548)
.+.++|.++|+++++-. ..+ .|.+++-.+ |+. ...+.. .......+++.++|
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~----------~l~~p~Gi~~~~~G-- 83 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE----------ELSMVTGLAVAVGG-- 83 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec----------CCCCccceeEecCC--
Confidence 37888999999887642 223 677776443 322 122211 12446789998888
Q ss_pred EEEEeCCCcEEEEEcC
Q 000055 2286 FASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2286 LaSGS~DGtVrVWDl~ 2301 (2548)
+++++.+...++.|.+
T Consensus 84 lyV~~~~~i~~~~d~~ 99 (367)
T TIGR02604 84 VYVATPPDILFLRDKD 99 (367)
T ss_pred EEEeCCCeEEEEeCCC
Confidence 4444444433444554
No 421
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=33.31 E-value=1.9e+02 Score=39.65 Aligned_cols=77 Identities=10% Similarity=0.073 Sum_probs=43.6
Q ss_pred CCCCEEEEEECCCeEEEEEcCC----CceeEEEeccCCCC----CC---------CCCCCCCeEEEEEcc----CCCEEE
Q 000055 2229 PLRPFFLVGSSNTHIYLWEFGK----DKATATYGVLPAAN----VP---------PPYALASISALQFDH----YGHRFA 2287 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~t----g~~l~t~~~l~ghs----~~---------~~~H~~~VtsVaFSP----dG~~La 2287 (2548)
++...++.+..||.+...+... +....... +..+. +. .....+.+.+++.+. +..+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEEL-FNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEE-eCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence 4667788888899888877764 22211110 00000 00 011124566667766 678999
Q ss_pred EEeCCCcEEEEEcCCCccc
Q 000055 2288 SAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2288 SGS~DGtVrVWDl~tgk~i 2306 (2548)
+.+.|+++|+||+.+++++
T Consensus 235 tl~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp EEETTSEEEEEETTTTCEE
T ss_pred EEeCCCeEEEEECCCCeEE
Confidence 9999999999999999873
No 422
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=32.69 E-value=1.2e+03 Score=30.37 Aligned_cols=52 Identities=8% Similarity=0.019 Sum_probs=25.0
Q ss_pred EEcCCCCEEEEEec--------cCCCC-eEEEEECCCCCCCc--ceeeeccCCCeEEEEEccC
Q 000055 2326 YITSSGSVIAAAGH--------SSNGI-NVVVWDTLAPPTSS--RASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2326 afSpdGslLATgG~--------SS~DG-tVrIWDl~t~~~k~--v~sl~gHs~~VtSLafsP~ 2377 (2548)
++.++|+++++-.. ....+ .|.+++-...+++. ...+.......+.+++.++
T Consensus 20 a~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~ 82 (367)
T TIGR02604 20 CFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG 82 (367)
T ss_pred eECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC
Confidence 46677776665310 00122 56666543322332 2333333345577887766
No 423
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=31.83 E-value=1.7e+03 Score=31.62 Aligned_cols=121 Identities=13% Similarity=0.115 Sum_probs=67.0
Q ss_pred EEEEEEcCCCCEEEE-----EECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC---
Q 000055 2222 TRAFSSHPLRPFFLV-----GSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG--- 2293 (2548)
Q Consensus 2222 V~~VsfSPdG~~LAS-----GS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG--- 2293 (2548)
.-.++.+||++++|- |+..-++++-|+.+|+.+...- .+....++|.+|++.|+-...|-
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i------------~~~~~~~~Wa~d~~~lfYt~~d~~~r 198 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI------------TNTSGSFAWAADGKTLFYTRLDENHR 198 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh------------cccccceEEecCCCeEEEEEEcCCCC
Confidence 566777899999884 4555679999999887654421 14577889999888776655442
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEE--E-EcCCCCEEEEEeccCCCCeEEEEECCCCCCCc
Q 000055 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--Y-ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--a-fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~ 2358 (2548)
.=++|.-.-+.. +......+..+..... . -+.+.++|+....+...+.+++.+...+...+
T Consensus 199 p~kv~~h~~gt~----~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p 262 (682)
T COG1770 199 PDKVWRHRLGTP----GSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEP 262 (682)
T ss_pred cceEEEEecCCC----CCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCce
Confidence 233443322210 0011112222222221 1 23345555544322345678888887655544
No 424
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=31.68 E-value=1.9e+03 Score=32.01 Aligned_cols=74 Identities=5% Similarity=0.082 Sum_probs=44.0
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEc----------------cCCCEEEEEeCCCc
Q 000055 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFD----------------HYGHRFASAALDGT 2294 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFS----------------PdG~~LaSGS~DGt 2294 (2548)
+..+..++.++.|.-.|..+|+.+-.+....... ....| .....+.+. ..+.+++.++.||.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~-~~~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTE-AGRQH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcc-ccccc-ccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence 4456666777888888888888777664321100 00001 011222221 13457888999999
Q ss_pred EEEEEcCCCccc
Q 000055 2295 VCTWQLEVGGRS 2306 (2548)
Q Consensus 2295 VrVWDl~tgk~i 2306 (2548)
+.-.|.++|+..
T Consensus 272 LiALDA~TGk~~ 283 (764)
T TIGR03074 272 LIALDADTGKLC 283 (764)
T ss_pred EEEEECCCCCEE
Confidence 999999988744
No 425
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=30.86 E-value=1.1e+03 Score=28.98 Aligned_cols=149 Identities=11% Similarity=0.156 Sum_probs=78.8
Q ss_pred CEEEEEECCCeEEEEEcCCCc-ee-EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000055 2232 PFFLVGSSNTHIYLWEFGKDK-AT-ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~-~l-~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
.+|+++ ....|.+|.+.... .. ..++.+. -.+.+.+++|. ++.++.|..++ ..+.|+.++....+.
T Consensus 106 ~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~--------lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 106 RRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS--------LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELL 173 (275)
T ss_pred eEEEEE-ECCEEEEEEEECCcccccceeEEEE--------cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEe
Confidence 344444 44589999987641 11 2222221 12779999998 66777777555 668888866533221
Q ss_pred cCccce----eccCCcccEEEE-cCCCCEEEEEeccCCCCeEEEEECCCCCCCcc--eeeeccCCCeEEEEEccCCCCCC
Q 000055 2310 PMESCL----CFSSHAMDVSYI-TSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR--ASITCHEGGARSISVFDNDLGSG 2382 (2548)
Q Consensus 2310 p~~s~~----t~~gH~~~V~af-SpdGslLATgG~SS~DGtVrIWDl~t~~~k~v--~sl~gHs~~VtSLafsP~dlg~g 2382 (2548)
...... ........+..+ -+++.++++- |..-...|.. +++. ..+.- ...+.++.+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-----~~~g~fv~~~---G~~~r~~~i~W-~~~p~~~~~~~p----- 239 (275)
T PF00780_consen 174 DPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-----DNIGVFVNKN---GEPSRKSTIQW-SSAPQSVAYSSP----- 239 (275)
T ss_pred CccCCcchhhhcccCCCceEEEEeCCceEEEEe-----cceEEEEcCC---CCcCcccEEEc-CCchhEEEEECC-----
Confidence 111000 000111222222 2345555542 3444444543 2222 22322 335667776544
Q ss_pred CCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000055 2383 SVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2383 s~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
+|+.-+. +.|.||+ +.+++.++.+
T Consensus 240 ----yli~~~~-~~iEV~~---~~~~~lvQ~i 263 (275)
T PF00780_consen 240 ----YLIAFSS-NSIEVRS---LETGELVQTI 263 (275)
T ss_pred ----EEEEECC-CEEEEEE---CcCCcEEEEE
Confidence 7777665 5599999 6778888876
No 426
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=30.77 E-value=6.3e+02 Score=31.57 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=26.3
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 000055 2459 RISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSK 2494 (2548)
Q Consensus 2459 sLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~ 2494 (2548)
-+...|+|++|+.+..++ .|||..+++.+++++.
T Consensus 174 ~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 174 FVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPD 207 (243)
T ss_pred eEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCC
Confidence 456789999999987654 4679988888887753
No 427
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=30.48 E-value=81 Score=43.15 Aligned_cols=39 Identities=13% Similarity=0.334 Sum_probs=29.7
Q ss_pred CCCEEEEEEeC----CCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000055 2454 LGSVTRISTVP----NTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2454 ~~~VtsLafSP----dG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.+.+..+++++ +..++++.+.|+++|+||+.+++++.+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 214 SSVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ---EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 34556666666 6789999999999999999999998766
No 428
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=30.30 E-value=1.1e+03 Score=31.92 Aligned_cols=111 Identities=10% Similarity=0.047 Sum_probs=60.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE---E--E-cC-CCCEEEEEeccCCCCeEEEEECCCC
Q 000055 2282 YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS---Y--I-TS-SGSVIAAAGHSSNGINVVVWDTLAP 2354 (2548)
Q Consensus 2282 dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~---a--f-Sp-dGslLATgG~SS~DGtVrIWDl~t~ 2354 (2548)
+...+++|+.+|.++||+...+... +. ....-..-..+|. + | +. +...||+- .-+.+.+|.+...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~---~~-~lllE~~l~~PILqv~~G~F~s~~~~~~LaVL----hP~kl~vY~v~~~ 107 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQ---PE-DLLLETQLKDPILQVECGKFVSGSEDLQLAVL----HPRKLSVYSVSLV 107 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCC---Cc-cEEEEEecCCcEEEEEeccccCCCCcceEEEe----cCCEEEEEEEEec
Confidence 3568999999999999998544311 10 0000011112332 1 3 22 33455554 5788888887432
Q ss_pred CCC-------cceeeeccC--CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeC
Q 000055 2355 PTS-------SRASITCHE--GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2355 ~~k-------~v~sl~gHs--~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDL 2402 (2548)
.+. .+..+..|. .....+.+-|- |......++..-+.||.+.+++-
T Consensus 108 ~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~F--gg~~~~~~IcVQS~DG~L~~feq 162 (418)
T PF14727_consen 108 DGTVEHGNQYQLELIYEHSLQRTAYNMCCGPF--GGVKGRDFICVQSMDGSLSFFEQ 162 (418)
T ss_pred CCCcccCcEEEEEEEEEEecccceeEEEEEEC--CCCCCceEEEEEecCceEEEEeC
Confidence 222 122223333 33344444333 11112468999999999999993
No 429
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.93 E-value=4.2e+02 Score=35.94 Aligned_cols=83 Identities=8% Similarity=-0.013 Sum_probs=51.9
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEE---------CCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCC
Q 000055 2455 GSVTRISTVPNTSLFLTGSKDGDVKLWD---------AKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR 2525 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~DGtIrIWD---------l~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd 2525 (2548)
-.|..+..++.|..++-.|.||.+.++= +++|+.+.+....--+..| |... .. -.+.+.+|+|+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~----ftss-~~--ltl~Qa~WHP~ 176 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERF----FTSS-TS--LTLKQAAWHPS 176 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccccee----eccC-Cc--eeeeeccccCC
Confidence 3678889999999999999999765532 2244433322111111111 1111 11 23567799998
Q ss_pred e-----EEEEECCCcEEEEECCCC
Q 000055 2526 G-----FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2526 G-----LaSGS~DGtIrIWDL~sg 2544 (2548)
. ++.-+.|.+||+|++...
T Consensus 177 S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 177 SILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred ccCCceEEEEecCcEEEEEecCCc
Confidence 7 777889999999999753
No 430
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=29.73 E-value=1.3e+03 Score=30.72 Aligned_cols=149 Identities=13% Similarity=0.059 Sum_probs=74.0
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCcee-EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000055 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l-~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
..+...++|.+++.|..-...+-|| .|... ..... + ....++++.|.+++..++++ .+|.+ +|...
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~-~--------~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d 308 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNR-A--------SARRIQNMGWRADGGLWLLT-RGGGL-YVSKG 308 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecC-C--------CccceeeeeEcCCCCEEEEe-CCceE-EEecC
Confidence 3445568888777765544334444 22211 11111 0 12568999999998877655 55665 34444
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee---eccCCCeEEEEEcc
Q 000055 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI---TCHEGGARSISVFD 2376 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl---~gHs~~VtSLafsP 2376 (2548)
.+..-....+.. .........+. .+.+++..+++| .+|.+....-. ++.-... ..-......+.|.+
T Consensus 309 ~G~~~~~~~f~~-~~~~~~~~~l~~v~~~~d~~~~a~G----~~G~v~~s~D~---G~tW~~~~~~~~~~~~ly~v~f~~ 380 (398)
T PLN00033 309 TGLTEEDFDFEE-ADIKSRGFGILDVGYRSKKEAWAAG----GSGILLRSTDG---GKSWKRDKGADNIAANLYSVKFFD 380 (398)
T ss_pred CCCcccccceee-cccCCCCcceEEEEEcCCCcEEEEE----CCCcEEEeCCC---CcceeEccccCCCCcceeEEEEcC
Confidence 442110000000 00111111233 256677777776 57766665432 2221111 22345678888876
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEE
Q 000055 2377 NDLGSGSVSPLIVTGGKGGDVGIH 2400 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLW 2400 (2548)
++ .....+.+|.|--|
T Consensus 381 ~~--------~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DK--------KGFVLGNDGVLLRY 396 (398)
T ss_pred CC--------ceEEEeCCcEEEEe
Confidence 53 44555667776544
No 431
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.45 E-value=1.9e+02 Score=35.32 Aligned_cols=74 Identities=18% Similarity=0.336 Sum_probs=49.5
Q ss_pred cCCCCEEEEEECCCeEEEEEcCCCceeEEE-eccCCCC---CCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000055 2228 HPLRPFFLVGSSNTHIYLWEFGKDKATATY-GVLPAAN---VPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2228 SPdG~~LASGS~DGsVrLWDl~tg~~l~t~-~~l~ghs---~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
..++.+|++-+.+|.+++||+.+++.+..- ...+--. .........|..+..+.+|.-+++-+ +|....|+.+-
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 367899999999999999999988764332 1100000 00002347789999998888776654 57788887763
No 432
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=28.59 E-value=2.6e+02 Score=32.86 Aligned_cols=117 Identities=23% Similarity=0.340 Sum_probs=71.6
Q ss_pred cchHHHHHHHhccccCCchhHHHHhh-ccCChHHHHHHHHhhHHHHhhcc-hhHHHHHHHHhcCChhH------HHHHHH
Q 000055 1275 NRIQVLAGLFKISKDEKDKPLVGFLS-RNFQEEKNKAAALKNAYVLLGRH-QLELAIAFFLLGGDAAS------AVTVCA 1346 (2548)
Q Consensus 1275 ~Kk~vl~~L~k~~~~~~~~~~~~Fl~-ndF~~~rwr~aA~KNAy~Ll~k~-ry~~AaaFFLLag~~~d------av~V~~ 1346 (2548)
..|++|+. ||-.-....+.+.+||. =|++++. ..+.||+||.+- ...-.-|.-||...+.| ||+.+-
T Consensus 29 ~ek~llW~-~R~~l~~~p~aL~~~L~sv~W~~~~----e~~e~~~lL~~W~~i~~~~aLeLL~~~f~~~~VR~yAV~~L~ 103 (166)
T cd00870 29 EEKDLIWK-FRFYLTNNKKALTKFLKSVNWSDEQ----EVKQALELMPKWAKIDIEDALELLSPYFTNPVVRKYAVSRLK 103 (166)
T ss_pred HHHHHHHH-hHHHHhhCcHHHHHHhhhCCCCCHH----HHHHHHHHHhcCCCCCHHHHHHHcCccCCCHHHHHHHHHHHH
Confidence 34555555 44321112244678884 3555432 566788888764 33455678888887765 666555
Q ss_pred HHcCChhHHhhhhhhh-----ccC---CChhhHHhHhhhccccccccCChhHHHHHHHHhC
Q 000055 1347 RNLGDVQLALVICRLV-----EKH---GGPLERNLVTKFILPSSIERGDYWLTSLLEWELG 1399 (2548)
Q Consensus 1347 ~~l~D~qLA~~i~Rl~-----e~~---~g~~~~~ll~~~vlp~~~~~~d~wl~s~~~w~l~ 1399 (2548)
++.|-+|...+--|+ |.. .++....-|.+++|-.|.. +.=++...||.|+
T Consensus 104 -~~sd~eL~~yL~QLVQaLKyE~~~~~~~~~~~s~La~fLl~Ral~--s~~ig~~lfW~Lk 161 (166)
T cd00870 104 -LASDEELLLYLLQLVQALKYENLDLSPLPRLDSPLADFLIERALK--NPKLANFLYWYLK 161 (166)
T ss_pred -hCCHHHHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHhc--CHHHHHHHHHHhh
Confidence 599999998887775 432 1122344555666655654 4459999999885
No 433
>PF12110 Nup96: Nuclear protein 96; InterPro: IPR021967 Nup96 (often known by the name of its yeast homologue Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex [], [].; PDB: 3BG1_C 3BG0_F 3IKO_B.
Probab=27.53 E-value=81 Score=39.91 Aligned_cols=49 Identities=24% Similarity=0.351 Sum_probs=32.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHcCChhHHhhhhhhhccCCChhhHHhHhhh
Q 000055 1325 LELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNLVTKF 1377 (2548)
Q Consensus 1325 y~~AaaFFLLag~~~dav~V~~~~l~D~qLA~~i~Rl~e~~~g~~~~~ll~~~ 1377 (2548)
|+..+--.|.++++.+|++++++ -||+.||.+|+-+ . +++..|.++++.
T Consensus 2 ~le~if~~L~~~~i~~A~~~A~~-~~n~~LA~Llsq~-~--~~~~~r~~~~~Q 50 (290)
T PF12110_consen 2 PLEKIFLLLSGHDIEEACELAID-SGNPHLATLLSQI-G--GDPAVRSLAKQQ 50 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHH-TT-HHHHHHHHHT-S----HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-CCCchHHHHHHHh-c--CCHHHHHHHHHH
Confidence 34555566778889999998876 5999999999998 2 334455444443
No 434
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=26.21 E-value=2.8e+02 Score=37.12 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=37.9
Q ss_pred ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 000055 2450 PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSK 2494 (2548)
Q Consensus 2450 ~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~ 2494 (2548)
+......+.+++.+|++++.++...=|.|.++|+.++..++.+++
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG 347 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG 347 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence 345566789999999999999887778999999999998887754
No 435
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=25.74 E-value=1.5e+03 Score=29.14 Aligned_cols=128 Identities=16% Similarity=0.124 Sum_probs=72.1
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccccc
Q 000055 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p 2310 (2548)
+++...+..+.-++|.|+.+.........+.. .+--.++. -.|++..++..|.-..+.|+.+.+.-...
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt--------~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP~la- 164 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT--------DGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQLA- 164 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccC--------CceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCceee-
Confidence 56677777777899999987655444332221 02223333 35999999986666668898765421110
Q ss_pred CccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc-CCCeEEEEEccC
Q 000055 2311 MESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH-EGGARSISVFDN 2377 (2548)
Q Consensus 2311 ~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH-s~~VtSLafsP~ 2377 (2548)
.. ......+-....-.|++-..+. .|+-+.|-|+..+ ..++..-.-. ..++.++..+++
T Consensus 165 --gr--ya~~~~d~~~v~ISGn~AYvA~---~d~GL~ivDVSnp-~sPvli~~~n~g~g~~sv~vsdn 224 (370)
T COG5276 165 --GR--YALPGGDTHDVAISGNYAYVAW---RDGGLTIVDVSNP-HSPVLIGSYNTGPGTYSVSVSDN 224 (370)
T ss_pred --ee--eccCCCCceeEEEecCeEEEEE---eCCCeEEEEccCC-CCCeEEEEEecCCceEEEEecCC
Confidence 00 1111111111112456655554 7889999999865 3343222222 337888888776
No 436
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.67 E-value=6.4e+02 Score=37.35 Aligned_cols=117 Identities=11% Similarity=0.004 Sum_probs=63.8
Q ss_pred CeEEEEEccCCCEEEE--EeCCCcEEEEEcCCCcccc---cccCccceeccCCcccEE--EEcCCCC-EEEEEeccCCCC
Q 000055 2273 SISALQFDHYGHRFAS--AALDGTVCTWQLEVGGRSN---VRPMESCLCFSSHAMDVS--YITSSGS-VIAAAGHSSNGI 2344 (2548)
Q Consensus 2273 ~VtsVaFSPdG~~LaS--GS~DGtVrVWDl~tgk~i~---i~p~~s~~t~~gH~~~V~--afSpdGs-lLATgG~SS~DG 2344 (2548)
.|..+...+|+...++ .+.+-.|..+|+++-.... ..+.....+......... -|+|.-- ..++. ..|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~---l~dl 178 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVD---LSDL 178 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhh---cccc
Confidence 4555666677654443 3444478889987543211 111111111111111111 2454322 22222 2688
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEe
Q 000055 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHD 2401 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWD 2401 (2548)
.|++..+... ...+..+ .-...+++++|+|. |..++.|-..|++.-|-
T Consensus 179 sl~V~~~~~~-~~~v~s~-p~t~~~Tav~WSpr-------GKQl~iG~nnGt~vQy~ 226 (1405)
T KOG3630|consen 179 SLRVKSTKQL-AQNVTSF-PVTNSQTAVLWSPR-------GKQLFIGRNNGTEVQYE 226 (1405)
T ss_pred chhhhhhhhh-hhhhccc-CcccceeeEEeccc-------cceeeEecCCCeEEEee
Confidence 8888777531 1122232 23457899999999 89999999999999887
No 437
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=25.05 E-value=9.1e+02 Score=32.89 Aligned_cols=114 Identities=8% Similarity=0.002 Sum_probs=60.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCC------CEEEEEe-C---
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG------HRFASAA-L--- 2291 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG------~~LaSGS-~--- 2291 (2548)
-+.++|.|+|++|++--..|.|++++-.++.... +..++.- ......+....|+++|+- .+|.... .
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~-~~~l~~v--~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKV-VFTLPEI--VNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceee-eecCCce--eccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 4788999999888776557999999865543221 1111110 001124778999999873 2444332 1
Q ss_pred ------CCcEEEEEcCCCc-ccc-ccc-CccceeccCCcccEEEEcCCCCEEEEEe
Q 000055 2292 ------DGTVCTWQLEVGG-RSN-VRP-MESCLCFSSHAMDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2292 ------DGtVrVWDl~tgk-~i~-i~p-~~s~~t~~gH~~~V~afSpdGslLATgG 2338 (2548)
...|.-|.+.... ... ... ......-..|...-..|.|||.++++.|
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~G 164 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIG 164 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEEC
Confidence 2234445543211 010 000 0000001246655556999999888876
No 438
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=24.88 E-value=2.5e+02 Score=37.48 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=34.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCC
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPA 2262 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~g 2262 (2548)
+.++..+|++++.|+...-|.|.|+|+.++..++..++.+.
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 56778889999999998889999999999988887776553
No 439
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=24.40 E-value=1.2e+02 Score=38.36 Aligned_cols=74 Identities=22% Similarity=0.269 Sum_probs=42.5
Q ss_pred HHhcCChhHHHHHHHHHcCChhHHhhhhhhhccCCChhhHHhHhhhccccccccCC------hhHHHHHHHHhCChhHHH
Q 000055 1332 FLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNLVTKFILPSSIERGD------YWLTSLLEWELGNYSQSF 1405 (2548)
Q Consensus 1332 FLLag~~~dav~V~~~~l~D~qLA~~i~Rl~e~~~g~~~~~ll~~~vlp~~~~~~d------~wl~s~~~w~l~~~~~a~ 1405 (2548)
+||.|+.++||+.|+++ ++...|++||+.... ..++++.++++--.- ..++ .-|+-..-=.-|+-..+|
T Consensus 5 ~Ll~G~~~~Av~~al~~-~~wa~ALlLAs~~g~---e~~~~v~~~y~~~~~-~~~~~~~~~~~~L~~l~~v~~g~~~~~v 79 (284)
T PF12931_consen 5 LLLVGNREEAVELALDN-GLWAHALLLASSLGP---ELWKKVVQEYFRREF-SAGSPSSKITHLLRTLYQVFSGNSPEAV 79 (284)
T ss_dssp HHHTT-HHHHHHHHHHT-T-HHHHHHHHHTS-H---HHHHHHHHHHHH---------THHHHHHHHHHHHHTTT-HHHHH
T ss_pred HHhCCCHHHHHHHHHHC-CChHHHHHHHHhcCH---HHHHHHHHHHHHHhc-cCCCCcchhhHHHHHHHHHHcCCcHHHH
Confidence 68999999999999986 999999999988732 245555555543221 1122 233333223335666666
Q ss_pred HHHhc
Q 000055 1406 LTMLG 1410 (2548)
Q Consensus 1406 ~~l~~ 1410 (2548)
+.|..
T Consensus 80 ~~l~~ 84 (284)
T PF12931_consen 80 DELVP 84 (284)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 66654
No 440
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=24.19 E-value=1e+03 Score=34.63 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=22.0
Q ss_pred CCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000055 2385 SPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2385 g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
...++.++.|+.+.-.| ..+|+.+..+
T Consensus 260 ~~rV~~~T~Dg~LiALD---A~TGk~~W~f 286 (764)
T TIGR03074 260 ARRIILPTSDARLIALD---ADTGKLCEDF 286 (764)
T ss_pred CCEEEEecCCCeEEEEE---CCCCCEEEEe
Confidence 45788899999999999 6788887665
No 441
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=24.00 E-value=4.8e+02 Score=31.13 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=43.5
Q ss_pred cCChhHHHHHHHHHc----CChhHHhhhhhh-h-ccCC--ChhhHHhHhhhccccccccCChhHHHHHHHHhCChhHHHH
Q 000055 1335 GGDAASAVTVCARNL----GDVQLALVICRL-V-EKHG--GPLERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFL 1406 (2548)
Q Consensus 1335 ag~~~dav~V~~~~l----~D~qLA~~i~Rl-~-e~~~--g~~~~~ll~~~vlp~~~~~~d~wl~s~~~w~l~~~~~a~~ 1406 (2548)
.|+.++|+...-+=+ +|.++...++.+ | ..++ .+--.+++++.+--....-.-.++...++-.+|+|++|+.
T Consensus 86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 86 RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 345566665554333 366666666663 3 3222 1344555555543332222335888888999999999997
Q ss_pred HHh
Q 000055 1407 TML 1409 (2548)
Q Consensus 1407 ~l~ 1409 (2548)
.+-
T Consensus 166 ~~~ 168 (198)
T PRK10370 166 LWQ 168 (198)
T ss_pred HHH
Confidence 653
No 442
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=23.41 E-value=1.5e+03 Score=28.13 Aligned_cols=117 Identities=17% Similarity=0.087 Sum_probs=63.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEE-cCCCceeE-EEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe---CCCcEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWE-FGKDKATA-TYGVLPAANVPPPYALASISALQFDHYGHRFASAA---LDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWD-l~tg~~l~-t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS---~DGtVr 2296 (2548)
...-+|++++...+....+...+++. ...++... .+.. . .-.+.|++++++|||.+++... .++.|.
T Consensus 68 l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~-~-------~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~ 139 (253)
T PF10647_consen 68 LTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDW-P-------GLRGRITALRVSPDGTRVAVVVEDGGGGRVY 139 (253)
T ss_pred cccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecc-c-------ccCCceEEEEECCCCcEEEEEEecCCCCeEE
Confidence 46667889988777777777777774 23332221 1111 1 1112899999999999988765 346777
Q ss_pred EEEcCCCccc-ccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEE
Q 000055 2297 TWQLEVGGRS-NVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2297 VWDl~tgk~i-~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrI 2348 (2548)
+=-+...... .................+. .|.+++.+++.+. ..++.+..
T Consensus 140 va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~--~~~~~~~~ 192 (253)
T PF10647_consen 140 VAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR--SAGGPVVR 192 (253)
T ss_pred EEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC--CCCCceeE
Confidence 7666433211 1110011111112223343 3777777766654 24444444
No 443
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.11 E-value=4.9e+02 Score=38.94 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=31.8
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000055 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
..+..+|..++.+..-..+.+-+..|+|.+||+..
T Consensus 239 ~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 239 GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 35778999999999999999999999999999986
No 444
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=23.11 E-value=1e+03 Score=32.55 Aligned_cols=157 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred EEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-------CCEEEEEeCCCcEE
Q 000055 2225 FSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-------GHRFASAALDGTVC 2296 (2548)
Q Consensus 2225 VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-------G~~LaSGS~DGtVr 2296 (2548)
+-...+..++. .|+....++--|+..|+.+..... +.=.-|.|.|+ ...-++|-.|..|.
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~------------~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svF 540 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDL------------KDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVF 540 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccceeeeEeec------------CCcceeecCCchhHHhcCccceEEeecccceE
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000055 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
-.|.+..+ +.......+...+...--+.-....-++|+|+ ..|.|++||--. .+....+.+-...|..|....
T Consensus 541 rIDPR~~g--NKi~v~esKdY~tKn~Fss~~tTesGyIa~as---~kGDirLyDRig--~rAKtalP~lG~aIk~idvta 613 (776)
T COG5167 541 RIDPRARG--NKIKVVESKDYKTKNKFSSGMTTESGYIAAAS---RKGDIRLYDRIG--KRAKTALPGLGDAIKHIDVTA 613 (776)
T ss_pred EecccccC--CceeeeeehhccccccccccccccCceEEEec---CCCceeeehhhc--chhhhcCcccccceeeeEeec
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCc
Q 000055 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGK 2409 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk 2409 (2548)
+ |.+++..+ ..++-+-|++ +..|+
T Consensus 614 ~-------Gk~ilaTC-k~yllL~d~~-ik~g~ 637 (776)
T COG5167 614 N-------GKHILATC-KNYLLLTDVP-IKYGQ 637 (776)
T ss_pred C-------CcEEEEee-cceEEEEecc-cccCC
No 445
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=23.09 E-value=6.4e+02 Score=33.69 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=79.0
Q ss_pred EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC----CeE-EEEEccCCCCCCCCCCEEEEEeCCCcEEEE-
Q 000055 2327 ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG----GAR-SISVFDNDLGSGSVSPLIVTGGKGGDVGIH- 2400 (2548)
Q Consensus 2327 fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~----~Vt-SLafsP~dlg~gs~g~lLVSGS~DGtVrLW- 2400 (2548)
..|||+.+..- ....+.++++....-+.........+ .|+ ++..... +..+..+..||-|.-|
T Consensus 228 L~Pdg~~LYv~----~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~G-------g~SLLv~~~dG~vsQWF 296 (733)
T COG4590 228 LTPDGKTLYVR----TGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSG-------GFSLLVVHEDGLVSQWF 296 (733)
T ss_pred ECCCCCEEEEe----cCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhC-------ceeEEEEcCCCceeeee
Confidence 78999988876 35788999887532222211111111 111 1111111 4567788888888766
Q ss_pred eCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEE
Q 000055 2401 DFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKL 2480 (2548)
Q Consensus 2401 DLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrI 2480 (2548)
|+|. ..+..+.+. +.+ +-....|..+.=..+.+-+++-+..|++.+
T Consensus 297 dvr~-~~~p~l~h~------------------------------R~f---~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~ 342 (733)
T COG4590 297 DVRR-DGQPHLNHI------------------------------RNF---KLAPAEVQFLLPETNRKGFYSLYRNGTLQS 342 (733)
T ss_pred eeec-CCCCcceee------------------------------ecc---ccCcccceeeccccccceEEEEcCCCceee
Confidence 5442 111111111 111 111123333332234456777777888877
Q ss_pred EECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCCc
Q 000055 2481 WDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2481 WDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+.....+.+-. ++..+ ...-+++||++ .+..-..|.|+++.+++..
T Consensus 343 f~st~~~~lL~-----------~~~~~--------~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 343 FYSTSEKLLLF-----------ERAYQ--------APQLVAMSPNQAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred eecccCcceeh-----------hhhhc--------CcceeeeCcccchheeecCCceEEEEecCCC
Confidence 76544433310 01111 12234899999 4444566899999998754
No 446
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.92 E-value=6.2e+02 Score=34.48 Aligned_cols=85 Identities=9% Similarity=0.050 Sum_probs=57.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEE---------cCCCceeEEEeccCCCC-CCCCCCCCCeEEEEEccCC---CEEEE
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYLWE---------FGKDKATATYGVLPAAN-VPPPYALASISALQFDHYG---HRFAS 2288 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWD---------l~tg~~l~t~~~l~ghs-~~~~~H~~~VtsVaFSPdG---~~LaS 2288 (2548)
|..+..++.|..++-.|.+|.+.++= +.+|+.+.+.+..+-.. +-.....-.+..++|+|+. ..|+.
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 67788889999999999999876654 23455554444433211 0000011357788999964 67888
Q ss_pred EeCCCcEEEEEcCCCccc
Q 000055 2289 AALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2289 GS~DGtVrVWDl~tgk~i 2306 (2548)
-..|.++|+||......+
T Consensus 186 L~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 186 LTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EecCcEEEEEecCCcchh
Confidence 899999999999765443
No 447
>PRK13684 Ycf48-like protein; Provisional
Probab=22.56 E-value=1.8e+03 Score=28.68 Aligned_cols=149 Identities=13% Similarity=0.054 Sum_probs=74.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEE-EEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000055 2222 TRAFSSHPLRPFFLVGSSNTHIYL-WEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrL-WDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+.++.+.|++.++++|. .|.+.. +| +.++....... .-...++++.+.++++.+++| ..|.+.+=..
T Consensus 175 ~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~---------~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~ 242 (334)
T PRK13684 175 VRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQR---------NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDP 242 (334)
T ss_pred EEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeC---------CCcccceeeeEcCCCCEEEEe-cCCEEEEccC
Confidence 57788889887766554 454432 22 22232222211 012678999999998876654 5677643223
Q ss_pred CCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee---ccCCCeEEEEEc
Q 000055 2301 EVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT---CHEGGARSISVF 2375 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~---gHs~~VtSLafs 2375 (2548)
+.|..-.... ... ......+. .+.+++..++++ .+|.|.. .... ++.-.... .-......+.+.
T Consensus 243 d~G~sW~~~~--~~~--~~~~~~l~~v~~~~~~~~~~~G----~~G~v~~-S~d~--G~tW~~~~~~~~~~~~~~~~~~~ 311 (334)
T PRK13684 243 DDLESWSKPI--IPE--ITNGYGYLDLAYRTPGEIWAGG----GNGTLLV-SKDG--GKTWEKDPVGEEVPSNFYKIVFL 311 (334)
T ss_pred CCCCcccccc--CCc--cccccceeeEEEcCCCCEEEEc----CCCeEEE-eCCC--CCCCeECCcCCCCCcceEEEEEe
Confidence 3332111000 000 00011222 356677777665 4665543 2221 22222221 112356677766
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEe
Q 000055 2376 DNDLGSGSVSPLIVTGGKGGDVGIHD 2401 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWD 2401 (2548)
.+ + .....+..|.|--|+
T Consensus 312 ~~-------~-~~~~~G~~G~il~~~ 329 (334)
T PRK13684 312 DP-------E-KGFVLGQRGVLLRYV 329 (334)
T ss_pred CC-------C-ceEEECCCceEEEec
Confidence 55 2 445566788887776
No 448
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=22.24 E-value=2.8e+02 Score=38.16 Aligned_cols=98 Identities=15% Similarity=0.262 Sum_probs=66.7
Q ss_pred CcceEEEEEeecccccce--EEEeeEeeccCce----EEeeeeecCCCcEEEEEeecceEEEEEecccCccccccccccc
Q 000055 802 AVSNVRIWESVCVTELGS--FVLEDTLSFDTNI----VAVNWLTLENGQSLLGVCLQNELKVYAQRHYGGQILLDTKNSL 875 (2548)
Q Consensus 802 ~~s~lsIwd~~~~s~ggs--~vlE~~~~~~~~i----v~LDW~s~edg~~ILtVG~~~~v~lytqlr~d~~~~~~~~~~~ 875 (2548)
..++|++|.. |.|+.++ |+.-||-++.+.+ +..=|--+ ..||||=-...+=++--.|.|....
T Consensus 80 HkkhVtVWqL-~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk---~~iL~VLT~~dvSV~~sV~~d~srV------- 148 (671)
T PF15390_consen 80 HKKHVTVWQL-CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK---KAILTVLTARDVSVLPSVHCDSSRV------- 148 (671)
T ss_pred ccceEEEEEe-ccCccccccceeeeeeeccCCcccCCCcccccCC---CceEEEEecCceeEeeeeeeCCceE-------
Confidence 4678999998 8777766 9999998885422 34445443 5699999999995554456662221
Q ss_pred ccccceeeccCCCCCcccccccccee-EEEEecceeeeeeccc
Q 000055 876 KMQNWFCLAFSPTFAAHDFTWGRRAI-AIVVHQSYLSIYSQFL 917 (2548)
Q Consensus 876 ~~~~w~~i~~~~t~~i~dlsW~rdGi-LVVGm~nem~vySQW~ 917 (2548)
+ +-|.+..-+| -=.|.+||- |||+-|+-+|-|- |.
T Consensus 149 -k---aDi~~~G~Ih--CACWT~DG~RLVVAvGSsLHSyi-Wd 184 (671)
T PF15390_consen 149 -K---ADIKTSGLIH--CACWTKDGQRLVVAVGSSLHSYI-WD 184 (671)
T ss_pred -E---EeccCCceEE--EEEecCcCCEEEEEeCCeEEEEE-ec
Confidence 1 1122344444 347999995 9999999999884 64
No 449
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.74 E-value=6.9e+02 Score=37.57 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=47.8
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECC----C---CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000055 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAK----A---AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~----T---gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
...|++++...+|+.|++|- || .+|.+. . ++..+.+.....--..+.|++-.-.+.-..+|.+++++...
T Consensus 178 g~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 34788999888999988774 55 444432 1 11111111000001112222211111111456777887766
Q ss_pred --EEEEECCCcEEEEECCC
Q 000055 2527 --FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2527 --LaSGS~DGtIrIWDL~s 2543 (2548)
+.+=+..|+|.+|++..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 77889999999999976
No 450
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.34 E-value=1.1e+03 Score=35.10 Aligned_cols=119 Identities=9% Similarity=-0.028 Sum_probs=70.3
Q ss_pred EcCCCCEEEEEeccCCCCeEEEEECCCCCCCc---ceeeecc------CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcE
Q 000055 2327 ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS---RASITCH------EGGARSISVFDNDLGSGSVSPLIVTGGKGGDV 2397 (2548)
Q Consensus 2327 fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~---v~sl~gH------s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtV 2397 (2548)
..+|+...++... +++-.|..||++.-.... ..-+..| ..-..++.|+|.- ....+....|+.|
T Consensus 108 ~~~D~t~s~v~~t-sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v------p~n~av~l~dlsl 180 (1405)
T KOG3630|consen 108 CFHDATDSVVVST-SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV------PLNSAVDLSDLSL 180 (1405)
T ss_pred eccCCceEEEEEe-cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc------cchhhhhccccch
Confidence 4567665555432 356689999987421111 1111111 1234567777762 4456667778888
Q ss_pred EEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCc
Q 000055 2398 GIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGD 2477 (2548)
Q Consensus 2398 rLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGt 2477 (2548)
++.-+.. ....... -.-...+++++|+|.|+.++.|-..|+
T Consensus 181 ~V~~~~~--~~~~v~s-------------------------------------~p~t~~~Tav~WSprGKQl~iG~nnGt 221 (1405)
T KOG3630|consen 181 RVKSTKQ--LAQNVTS-------------------------------------FPVTNSQTAVLWSPRGKQLFIGRNNGT 221 (1405)
T ss_pred hhhhhhh--hhhhhcc-------------------------------------cCcccceeeEEeccccceeeEecCCCe
Confidence 8776431 0011000 123457899999999999999999999
Q ss_pred EEEEECCCCcEEEEe
Q 000055 2478 VKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2478 IrIWDl~Tgell~tL 2492 (2548)
+.-|-.. ++....+
T Consensus 222 ~vQy~P~-leik~~i 235 (1405)
T KOG3630|consen 222 EVQYEPS-LEIKSEI 235 (1405)
T ss_pred EEEeecc-cceeecc
Confidence 9988753 4444434
No 451
>PF13934 ELYS: Nuclear pore complex assembly
Probab=20.76 E-value=6.5e+02 Score=30.92 Aligned_cols=160 Identities=17% Similarity=0.146 Sum_probs=88.7
Q ss_pred eChHHHHHHHHHHHHHHHhccCCcchhHHHHHHhcchHHHHHHHhccccCCchhHHHHhhccCChHHHHHHHHhhHHHHh
Q 000055 1241 TDVTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEEKNKAAALKNAYVLL 1320 (2548)
Q Consensus 1241 ~~~~~lr~~~e~iA~~~~~~~~dp~~~al~Y~al~Kk~vl~~L~k~~~~~~~~~~~~Fl~ndF~~~rwr~aA~KNAy~Ll 1320 (2548)
++.+.||+.+..|....... .-..|-+||+.+--... ......+=|.+.|.-++--.... .||-+|
T Consensus 24 ~s~~~L~~Ll~~i~~~~~~~--~~K~~l~~YlLlD~~~~-----------~~~~~~~~Fa~~f~ip~~~~~~~-~g~W~L 89 (226)
T PF13934_consen 24 KSDNDLRALLDLILSSNVSL--LKKHSLFYYLLLDLDDT-----------RPSELAESFARAFGIPPKYIKFI-QGFWLL 89 (226)
T ss_pred cCHHHHHHHHHHHhcCCcCH--HHhHHHHHHHHHhcCcc-----------ccccHHHHHHHHhCCCHHHHHHH-HHHHHh
Confidence 45566777776665432211 11247777777654111 00113444455666554333322 466677
Q ss_pred hcchhHHHHHHHHhc----CChhHHHHHHHHHcCChhHHhhhhhhhccCCCh-----hhHHhHhhhccccccc-------
Q 000055 1321 GRHQLELAIAFFLLG----GDAASAVTVCARNLGDVQLALVICRLVEKHGGP-----LERNLVTKFILPSSIE------- 1384 (2548)
Q Consensus 1321 ~k~ry~~AaaFFLLa----g~~~dav~V~~~~l~D~qLA~~i~Rl~e~~~g~-----~~~~ll~~~vlp~~~~------- 1384 (2548)
=...|+.|...+.=. ......+++++.+ ++.++|+...|.....-.. .+..+|.+..+++|..
T Consensus 90 D~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~-~~~~lAL~y~~~~~p~l~s~~~~~~~~~~La~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSLIPWFPDKILQALLRR-GDPKLALRYLRAVGPPLSSPEALTLYFVALANGLVTEAFSFQRSYPD 168 (226)
T ss_pred ChHhHHHHHHHhCCCCCCcccHHHHHHHHHHC-CChhHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCHHHHHHHHHhCch
Confidence 777777766655322 2235677888876 7888888888887654321 1234566666666522
Q ss_pred -cCChhHHHHHHHHhCCh--hHHHHHHhcCCccc
Q 000055 1385 -RGDYWLTSLLEWELGNY--SQSFLTMLGFQSTA 1415 (2548)
Q Consensus 1385 -~~d~wl~s~~~w~l~~~--~~a~~~l~~~~~~~ 1415 (2548)
.+.+-+..++.++++.. ...++.|++.|-++
T Consensus 169 ~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~ 202 (226)
T PF13934_consen 169 ELRRRLFEQLLEHCLEECARSGRLDELLSLPLDE 202 (226)
T ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCCh
Confidence 12235666777777533 45577888777653
No 452
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=20.23 E-value=5.9e+02 Score=32.39 Aligned_cols=55 Identities=7% Similarity=0.147 Sum_probs=36.5
Q ss_pred CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe------CCCcEEEEEcCCCc
Q 000055 2240 NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA------LDGTVCTWQLEVGG 2304 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS------~DGtVrVWDl~tgk 2304 (2548)
-..|++||..+.+-...-.. -.+.|+++.|..+...++.|. ....+..||+.+..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~----------i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG----------ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CCEEEEEECCCCEeecCCCC----------ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 34589999876553322111 237899999986666666663 35578889987653
Done!