BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000056
(2526 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 56.2 bits (134), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 1539 NIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERL 1578
N +E+LK+ YRKLA+KYHPDKNP EKF + +AYE L
Sbjct: 17 NATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVL 56
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 30/37 (81%)
Query: 1542 EEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERL 1578
+ +LK+ YRK+A+K+HPDKNP+G E+F + +AYE L
Sbjct: 22 DNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVL 58
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily
B Member 8
Length = 92
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 8/58 (13%)
Query: 1543 EKLKRQYRKLAMKYHPDKNPEGRE----KFLAVQKAYERL----QATMQGLQGPQPWR 1592
E +K+ YRKLA+++HPDKNP+ +E KF V +AYE L + ++ G WR
Sbjct: 24 EDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWR 81
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 4/40 (10%)
Query: 1543 EKLKRQYRKLAMKYHPDKNPEGRE----KFLAVQKAYERL 1578
E +K+ YRKLA+K+HPDKNPE +E +F V +AYE L
Sbjct: 24 EAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVL 63
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal
Fragment (Residues 1-104) Of The Molecular Chaperone
Dnaj, Nmr, 20 Structures
Length = 103
Score = 45.4 bits (106), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 1529 EMSNISKKIENIDEEKLKRQYRKLAMKYHPDKN---PEGREKFLAVQKAYERL 1578
E+ +SK E E ++++ Y++LAMKYHPD+N E KF +++AYE L
Sbjct: 7 EILGVSKTAE---EREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVL 56
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 45.4 bits (106), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 1529 EMSNISKKIENIDEEKLKRQYRKLAMKYHPDKN---PEGREKFLAVQKAYERL 1578
E+ +SK E E ++++ Y++LAMKYHPD+N E KF +++AYE L
Sbjct: 7 EILGVSKTAE---EREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVL 56
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 45.1 bits (105), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 1542 EEKLKRQYRKLAMKYHPDKN--PEGREKFLAVQKAYERL 1578
E ++K+ + KLAMKYHPDKN P+ KF + +AYE L
Sbjct: 21 ERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETL 59
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 44.7 bits (104), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 1542 EEKLKRQYRKLAMKYHPDKN--PEGREKFLAVQKAYERL 1578
+E++KR YR+ A++YHPDKN P EKF + +AY+ L
Sbjct: 17 DEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVL 55
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal
Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj,
Nmr, 20 Structures
Length = 77
Score = 44.3 bits (103), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 1529 EMSNISKKIENIDEEKLKRQYRKLAMKYHPDKN---PEGREKFLAVQKAYERL 1578
E+ +SK E E ++++ Y++LAMKYHPD+N E KF +++AYE L
Sbjct: 7 EILGVSKTAE---EREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVL 56
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 44.3 bits (103), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 1538 ENIDEEKLKRQYRKLAMKYHPDK---NPEGREKFLAVQKAY 1575
+N + +K+ YRKLA+KYHPDK NPE +KF + A+
Sbjct: 27 KNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAH 67
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 1541 DEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERL 1578
+E++LK+ YRK A+KYHPDK EKF + +A+E L
Sbjct: 21 NEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEIL 58
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 1542 EEKLKRQYRKLAMKYHPDKN--PEGREKFLAVQKAYERL 1578
+E LK+ YR+LA+K+HPDKN P E F A+ AY L
Sbjct: 21 DEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVL 59
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human
Tid1 Protein
Length = 79
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 1539 NIDEEKLKRQYRKLAMKYHPDKN---PEGREKFLAVQKAYERL 1578
N ++++K+ Y +LA KYHPD N P+ +EKF + +AYE L
Sbjct: 18 NASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVL 60
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 40.8 bits (94), Expect = 0.010, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 4/40 (10%)
Query: 1543 EKLKRQYRKLAMKYHPDKNPEGRE----KFLAVQKAYERL 1578
+ +K+ YR+ A+++HPDKNP+ +E KF V +AYE L
Sbjct: 17 DDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVL 56
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 40.4 bits (93), Expect = 0.013, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 1538 ENIDEEKLKRQYRKLAMKYHPD--KNPE----GREKFLAVQKAYERLQ 1579
E D++KL + YR LA K+HPD KN E E+F + AYE L+
Sbjct: 26 EEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLK 73
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 40.0 bits (92), Expect = 0.016, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 1542 EEKLKRQYRKLAMKYHPDKN--PEGREKFLAVQKAYERL 1578
+ +K+ Y+KLA ++HPDKN P ++F+ + KAYE L
Sbjct: 31 QADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEIL 69
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 38.9 bits (89), Expect = 0.034, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 1537 IENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQATMQGLQ 1586
I ID+ +L+++YR+L ++HPD +G E+ + +AY L+ ++ Q
Sbjct: 19 IWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQ 68
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 1544 KLKRQYRKLAMKYHPDKNPEG---REKFLAVQKAYERLQ 1579
++++ ++KLA+K HPDKNP FL + +AYE L+
Sbjct: 37 EIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLK 75
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 1544 KLKRQYRKLAMKYHPDKNPEG---REKFLAVQKAYERLQ 1579
++++ ++KLA+K HPDKNP FL + +AYE L+
Sbjct: 18 EIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLK 56
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 36.6 bits (83), Expect = 0.18, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 1528 EEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERLQ 1579
+E++++ ++ + E + K+ R+L +K+HPDKNPE E F +Q RL+
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE 71
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 1545 LKRQYRKLAMKYHPD--KNPEGREKFLAVQKAYERLQATMQGLQGPQPWR 1592
+K YR+LA KYHPD K P+ +F V +A+E L + + Q W+
Sbjct: 22 IKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQ 71
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182 Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182 Clone
Length = 181
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 1537 IENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQ 1579
I ID+ +L+++YR+L ++HPD +G E+ + +AY L+
Sbjct: 27 IWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLK 69
>pdb|3LXH|A Chain A, Crystal Structure Of Cytochrome P450 Cyp101d1
pdb|3LXH|B Chain B, Crystal Structure Of Cytochrome P450 Cyp101d1
pdb|3LXI|A Chain A, Crystal Structure Of Camphor-Bound Cyp101d1
pdb|3LXI|B Chain B, Crystal Structure Of Camphor-Bound Cyp101d1
Length = 421
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 2207 QTTETPELVWTPAMAASLSAQISTMASDLYR--EQMKGRVVDWDVPEQASAQQEM 2259
Q +TP LVWTP A T+ ++YR E+ RV+ W VP +A +M
Sbjct: 48 QQPDTPPLVWTPFTGGHWIATRGTLIDEIYRSPERFSSRVI-W-VPREAGEAYDM 100
>pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
Length = 901
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 23/138 (16%)
Query: 1198 KKAIDWTTRCWASGMLDWKK--LRDIR--ELRWALAVRVPVLTPTQVGEAALAILHNMVS 1253
+ +I W R + + + L D R ++ W LA+++PV P V + + + N++
Sbjct: 233 RNSIGWLERLGQRKRITYSQEVLTDFRRQDMIWVLALQLPV-NPQVVWDVPRSSIANLIM 291
Query: 1254 AHSDLDDAGEIVTPTPRVKWILSSSRCLPHIAQAMLSGEPSIVEXXXXXXXXXXTRNPKA 1313
+ GE + P PR+ I + R A+L+G P A
Sbjct: 292 NIATCLPTGEYIAPNPRISSITLTQRITTTGPFAILTGS-----------------TPTA 334
Query: 1314 MIRLYSTGAFYFALAYPG 1331
+L Y AL +PG
Sbjct: 335 Q-QLNDVRKIYLALMFPG 351
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 1541 DEEKLKRQYRKLAMKYHPD--KNPEGREKFLAVQKAYERLQATMQGLQGPQPWR 1592
D + +K YR+LA KYHPD K + KF + +A+E L+ + + Q W+
Sbjct: 41 DLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94
>pdb|1DRK|A Chain A, Probing Protein-Protein Interactions: The Ribose-Binding
Protein In Bacterial Transport And Chemotaxis
Length = 271
Score = 31.2 bits (69), Expect = 8.4, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 1944 ISYLVHNQSATKSDVQGEESLDG-LSSKIVQDKLSLDPSS-SKTFELPSDATDSSMNERK 2001
I + ++ ATK +V + D L KI D ++ +K EL A S+ ER
Sbjct: 83 IPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGTAATSAARERG 142
Query: 2002 VN-DESLAVSDRKVTGKE--DSVMIKNLQFGLTSLQNILTSNPNLASIFSTKEKL 2053
+++A V + D IK GL +QN+LT++P++ ++F+ +++
Sbjct: 143 EGFQQAVAAHKFNVLASQPADFDRIK----GLNVMQNLLTAHPDVQAVFAQNDEM 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,646,111
Number of Sequences: 62578
Number of extensions: 2421990
Number of successful extensions: 5292
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5265
Number of HSP's gapped (non-prelim): 35
length of query: 2526
length of database: 14,973,337
effective HSP length: 115
effective length of query: 2411
effective length of database: 7,776,867
effective search space: 18750026337
effective search space used: 18750026337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)