Query 000056
Match_columns 2526
No_of_seqs 545 out of 2231
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 15:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1789 Endocytosis protein RM 100.0 0E+00 0E+00 4630.5 139.0 2157 13-2509 2-2170(2235)
2 KOG1789 Endocytosis protein RM 100.0 9E-100 2E-104 933.9 47.7 922 907-2198 1167-2192(2235)
3 COG0484 DnaJ DnaJ-class molecu 99.6 9.1E-16 2E-20 187.5 6.2 69 1502-1612 3-74 (371)
4 KOG0717 Molecular chaperone (D 99.6 1.1E-15 2.4E-20 185.9 5.1 112 1502-1649 7-126 (508)
5 KOG0713 Molecular chaperone (D 99.5 2.7E-14 5.9E-19 170.5 5.5 71 1501-1613 14-87 (336)
6 KOG0712 Molecular chaperone (D 99.4 1.6E-13 3.5E-18 166.1 4.6 66 1504-1611 5-70 (337)
7 PRK14296 chaperone protein Dna 99.3 1.8E-12 4E-17 162.5 6.1 68 1501-1610 2-71 (372)
8 PRK14288 chaperone protein Dna 99.3 1.9E-12 4E-17 162.4 6.1 66 1503-1610 3-71 (369)
9 PTZ00037 DnaJ_C chaperone prot 99.3 4.1E-12 8.8E-17 161.0 6.8 69 1499-1610 24-92 (421)
10 PRK14286 chaperone protein Dna 99.2 7.5E-12 1.6E-16 157.1 6.1 68 1501-1610 2-72 (372)
11 PRK14287 chaperone protein Dna 99.2 1.1E-11 2.4E-16 155.6 5.9 67 1502-1610 3-71 (371)
12 PRK14279 chaperone protein Dna 99.2 1.1E-11 2.5E-16 156.4 6.1 66 1502-1609 8-76 (392)
13 PRK14276 chaperone protein Dna 99.2 2E-11 4.4E-16 153.7 6.4 67 1502-1610 3-71 (380)
14 PRK14282 chaperone protein Dna 99.2 2.2E-11 4.7E-16 153.0 6.4 67 1502-1610 3-73 (369)
15 PF14237 DUF4339: Domain of un 99.1 2.3E-11 4.9E-16 108.8 3.6 45 1173-1218 1-45 (45)
16 PRK14283 chaperone protein Dna 99.1 2.8E-11 6.2E-16 152.4 5.9 67 1502-1610 4-72 (378)
17 PRK14280 chaperone protein Dna 99.1 3.1E-11 6.8E-16 151.9 6.2 67 1502-1610 3-71 (376)
18 PRK14299 chaperone protein Dna 99.1 3.1E-11 6.8E-16 147.2 5.9 67 1502-1610 3-71 (291)
19 PRK14298 chaperone protein Dna 99.1 3.2E-11 7E-16 151.7 6.1 66 1503-1610 5-72 (377)
20 PRK14294 chaperone protein Dna 99.1 3.7E-11 7.9E-16 150.8 6.2 68 1501-1610 2-72 (366)
21 PRK14297 chaperone protein Dna 99.1 4.1E-11 9E-16 151.0 6.7 66 1503-1610 4-72 (380)
22 PRK14285 chaperone protein Dna 99.1 4.3E-11 9.3E-16 150.0 6.7 66 1503-1610 3-71 (365)
23 PRK14301 chaperone protein Dna 99.1 4.3E-11 9.4E-16 150.4 6.5 67 1502-1610 3-72 (373)
24 PRK14277 chaperone protein Dna 99.1 4.6E-11 1E-15 150.8 6.2 66 1503-1610 5-73 (386)
25 PRK14278 chaperone protein Dna 99.1 4.6E-11 1E-15 150.4 5.6 66 1503-1610 3-70 (378)
26 KOG0716 Molecular chaperone (D 99.1 7E-11 1.5E-15 137.8 6.3 67 1502-1610 30-99 (279)
27 PRK14284 chaperone protein Dna 99.1 7.8E-11 1.7E-15 149.0 6.3 65 1504-1610 2-69 (391)
28 PRK14291 chaperone protein Dna 99.1 8.9E-11 1.9E-15 148.1 6.4 66 1503-1610 3-70 (382)
29 PRK10767 chaperone protein Dna 99.1 9.3E-11 2E-15 147.5 6.3 67 1502-1610 3-72 (371)
30 KOG0718 Molecular chaperone (D 99.1 1.2E-10 2.6E-15 142.5 6.5 70 1500-1611 6-81 (546)
31 PRK14281 chaperone protein Dna 99.1 1.3E-10 2.7E-15 147.4 6.4 66 1503-1610 3-71 (397)
32 PRK14295 chaperone protein Dna 99.1 1.4E-10 3E-15 146.5 6.5 66 1503-1610 9-81 (389)
33 PRK14289 chaperone protein Dna 99.0 2.9E-10 6.3E-15 143.8 6.1 67 1502-1610 4-73 (386)
34 PRK14290 chaperone protein Dna 99.0 3.8E-10 8.2E-15 141.8 6.5 66 1503-1610 3-72 (365)
35 PRK10266 curved DNA-binding pr 99.0 3.8E-10 8.3E-15 138.7 5.9 66 1502-1609 3-70 (306)
36 TIGR02349 DnaJ_bact chaperone 99.0 4.4E-10 9.5E-15 140.8 6.3 65 1504-1610 1-67 (354)
37 PRK14292 chaperone protein Dna 99.0 5.3E-10 1.1E-14 140.8 6.8 65 1504-1610 3-69 (371)
38 PRK14300 chaperone protein Dna 99.0 4.9E-10 1.1E-14 141.0 6.4 66 1503-1610 3-70 (372)
39 KOG0691 Molecular chaperone (D 99.0 4.7E-10 1E-14 135.4 5.6 68 1502-1611 4-74 (296)
40 PHA03102 Small T antigen; Revi 99.0 9.7E-10 2.1E-14 121.6 7.2 67 1501-1610 3-71 (153)
41 PTZ00341 Ring-infected erythro 99.0 6.4E-10 1.4E-14 146.2 6.7 68 1502-1611 572-641 (1136)
42 KOG0719 Molecular chaperone (D 98.9 7.3E-10 1.6E-14 126.4 5.7 66 1503-1610 14-84 (264)
43 KOG0715 Molecular chaperone (D 98.9 6.3E-10 1.4E-14 135.2 5.5 67 1502-1610 42-110 (288)
44 PRK14293 chaperone protein Dna 98.9 9.3E-10 2E-14 138.7 6.2 66 1503-1610 3-70 (374)
45 cd06257 DnaJ DnaJ domain or J- 98.9 3.1E-09 6.7E-14 98.0 6.5 52 1504-1580 1-55 (55)
46 smart00271 DnaJ DnaJ molecular 98.9 3.9E-09 8.5E-14 99.1 6.7 54 1504-1582 2-59 (60)
47 PF00226 DnaJ: DnaJ domain; I 98.9 3.1E-09 6.8E-14 101.3 6.0 54 1504-1582 1-58 (64)
48 PTZ00100 DnaJ chaperone protei 98.8 1.6E-08 3.4E-13 107.0 9.9 96 1458-1579 18-115 (116)
49 KOG0721 Molecular chaperone (D 98.8 5.6E-09 1.2E-13 118.8 5.9 55 1503-1582 99-156 (230)
50 PRK09430 djlA Dna-J like membr 98.8 2.5E-08 5.4E-13 120.5 10.8 92 1458-1581 151-263 (267)
51 TIGR03835 termin_org_DnaJ term 98.7 2E-08 4.3E-13 130.3 5.9 66 1503-1610 2-69 (871)
52 PLN03200 cellulose synthase-in 98.6 0.00033 7.1E-09 101.8 46.9 316 2026-2474 421-745 (2102)
53 COG2214 CbpA DnaJ-class molecu 98.6 7.6E-08 1.6E-12 110.6 7.2 56 1502-1582 5-64 (237)
54 KOG0722 Molecular chaperone (D 98.5 4E-08 8.7E-13 113.0 2.9 56 1502-1582 32-89 (329)
55 KOG0624 dsRNA-activated protei 98.5 1.1E-07 2.3E-12 113.7 5.8 61 1503-1588 394-460 (504)
56 KOG0720 Molecular chaperone (D 98.3 2.1E-07 4.5E-12 115.3 3.0 63 1502-1589 234-298 (490)
57 PRK05014 hscB co-chaperone Hsc 98.3 6E-07 1.3E-11 102.1 5.9 56 1504-1582 2-65 (171)
58 PHA02624 large T antigen; Prov 98.3 6.4E-07 1.4E-11 116.1 6.6 57 1502-1584 10-68 (647)
59 PLN03200 cellulose synthase-in 98.3 0.006 1.3E-07 89.4 45.4 313 2027-2474 381-704 (2102)
60 KOG0550 Molecular chaperone (D 98.3 1.2E-06 2.7E-11 107.5 7.4 66 1502-1592 372-441 (486)
61 PRK01356 hscB co-chaperone Hsc 98.2 7.8E-07 1.7E-11 100.7 4.9 56 1504-1582 3-64 (166)
62 KOG0714 Molecular chaperone (D 98.2 7.3E-07 1.6E-11 107.4 4.2 66 1503-1610 3-72 (306)
63 PRK03578 hscB co-chaperone Hsc 98.2 1.8E-06 3.9E-11 98.6 5.6 57 1503-1582 6-70 (176)
64 COG5407 SEC63 Preprotein trans 98.2 1.1E-06 2.4E-11 107.7 3.7 55 1503-1582 98-160 (610)
65 PRK00294 hscB co-chaperone Hsc 98.1 2E-06 4.3E-11 98.0 5.0 57 1503-1582 4-68 (173)
66 TIGR00714 hscB Fe-S protein as 97.7 3.2E-05 7E-10 87.2 4.9 44 1539-1582 2-53 (157)
67 COG5269 ZUO1 Ribosome-associat 97.6 8.7E-05 1.9E-09 86.7 6.9 59 1503-1583 43-106 (379)
68 PF05804 KAP: Kinesin-associat 97.6 0.015 3.1E-07 79.2 28.4 382 1658-2193 279-674 (708)
69 KOG1150 Predicted molecular ch 97.4 0.00013 2.8E-09 82.5 4.9 55 1503-1582 53-111 (250)
70 PF05804 KAP: Kinesin-associat 97.1 0.037 8.1E-07 75.4 23.1 340 2039-2474 278-630 (708)
71 PRK01773 hscB co-chaperone Hsc 96.9 0.0008 1.7E-08 77.1 4.7 56 1504-1582 3-66 (173)
72 KOG0723 Molecular chaperone (D 96.6 0.005 1.1E-07 64.3 6.7 58 1498-1581 51-108 (112)
73 KOG0568 Molecular chaperone (D 96.1 0.0093 2E-07 68.9 6.4 56 1501-1581 45-103 (342)
74 PF02213 GYF: GYF domain; Int 96.1 0.0045 9.8E-08 58.7 3.4 49 1172-1220 1-50 (57)
75 cd00072 GYF GYF domain: contai 95.6 0.015 3.3E-07 55.4 4.5 50 1172-1221 2-52 (57)
76 KOG4224 Armadillo repeat prote 94.7 2 4.3E-05 53.8 19.4 190 2037-2243 319-524 (550)
77 KOG0166 Karyopherin (importin) 93.6 21 0.00046 47.8 26.8 159 2026-2193 254-416 (514)
78 smart00444 GYF Contains conser 92.4 0.19 4E-06 48.0 4.6 50 1172-1221 1-50 (56)
79 cd00020 ARM Armadillo/beta-cat 92.3 0.95 2.1E-05 47.2 10.3 97 2334-2474 2-101 (120)
80 PF10508 Proteasom_PSMB: Prote 91.6 19 0.00042 48.5 23.7 118 2026-2149 136-256 (503)
81 cd00020 ARM Armadillo/beta-cat 91.4 1.5 3.2E-05 45.8 10.6 111 2050-2168 6-119 (120)
82 COG1076 DjlA DnaJ-domain-conta 90.9 0.18 3.9E-06 58.3 3.4 51 1503-1578 113-173 (174)
83 KOG0166 Karyopherin (importin) 90.4 25 0.00054 47.2 22.1 266 2088-2474 102-374 (514)
84 cd00256 VATPase_H VATPase_H, r 88.7 30 0.00065 45.8 21.0 289 2026-2352 71-409 (429)
85 PF03656 Pam16: Pam16; InterP 87.4 1.3 2.7E-05 49.1 6.5 57 1499-1581 54-110 (127)
86 PF10508 Proteasom_PSMB: Prote 85.3 8.2 0.00018 51.9 13.8 139 2027-2174 95-235 (503)
87 KOG0431 Auxilin-like protein a 83.9 0.97 2.1E-05 59.5 4.2 40 1539-1578 399-448 (453)
88 PF06017 Myosin_TH1: Myosin ta 83.6 5.2 0.00011 47.4 9.7 89 293-382 62-156 (199)
89 PF04826 Arm_2: Armadillo-like 83.6 15 0.00032 45.5 13.8 170 1095-1331 15-186 (254)
90 KOG4224 Armadillo repeat prote 83.2 68 0.0015 41.1 18.8 304 2067-2500 139-469 (550)
91 PF06371 Drf_GBD: Diaphanous G 81.3 3 6.4E-05 48.1 6.5 88 1661-1753 99-186 (187)
92 KOG2160 Armadillo/beta-catenin 80.0 15 0.00032 46.9 12.2 125 2040-2169 113-240 (342)
93 PF04826 Arm_2: Armadillo-like 78.4 13 0.00027 46.0 10.8 160 2027-2197 72-232 (254)
94 PF06017 Myosin_TH1: Myosin ta 74.5 6 0.00013 46.9 6.5 87 20-116 50-143 (199)
95 PF06025 DUF913: Domain of Unk 73.6 33 0.00072 44.8 13.2 164 1112-1343 3-174 (379)
96 KOG4199 Uncharacterized conser 73.0 28 0.0006 44.1 11.5 133 1095-1327 244-378 (461)
97 cd01216 Fe65 Fe65 Phosphotyros 72.2 13 0.00028 41.1 7.9 78 135-221 36-114 (123)
98 PF11841 DUF3361: Domain of un 70.5 55 0.0012 38.0 12.4 151 1127-1350 4-154 (160)
99 KOG4199 Uncharacterized conser 70.5 91 0.002 39.8 15.0 73 2098-2170 243-317 (461)
100 cd01203 DOK_PTB Downstream of 69.7 15 0.00033 39.6 7.3 69 140-222 22-94 (104)
101 PF12348 CLASP_N: CLASP N term 67.9 48 0.001 39.5 12.1 201 498-734 23-227 (228)
102 cd00934 PTB Phosphotyrosine-bi 67.8 16 0.00036 39.1 7.5 78 135-220 38-117 (123)
103 KOG2734 Uncharacterized conser 67.8 25 0.00055 45.8 9.9 127 2035-2168 109-254 (536)
104 PF02174 IRS: PTB domain (IRS- 67.8 15 0.00034 39.0 7.0 76 134-223 17-96 (100)
105 smart00462 PTB Phosphotyrosine 67.1 18 0.00039 39.6 7.7 78 135-220 40-119 (134)
106 PF00514 Arm: Armadillo/beta-c 65.3 6.2 0.00013 34.9 3.0 39 1269-1307 2-40 (41)
107 PF00640 PID: Phosphotyrosine 63.3 28 0.00061 38.2 8.4 107 103-220 20-128 (140)
108 KOG2171 Karyopherin (importin) 63.0 7.4E+02 0.016 36.7 26.5 289 2097-2475 119-442 (1075)
109 PF05918 API5: Apoptosis inhib 61.5 2E+02 0.0042 39.7 16.8 255 2104-2432 49-322 (556)
110 PF13446 RPT: A repeated domai 61.3 13 0.00028 36.0 4.7 48 1500-1580 2-49 (62)
111 PF03224 V-ATPase_H_N: V-ATPas 58.2 36 0.00079 43.0 9.1 133 2027-2163 168-308 (312)
112 PF05536 Neurochondrin: Neuroc 55.0 94 0.002 42.6 12.7 94 2068-2170 71-169 (543)
113 PF08416 PTB: Phosphotyrosine- 54.9 23 0.00051 39.6 5.9 87 134-225 34-124 (131)
114 smart00185 ARM Armadillo/beta- 49.3 18 0.00039 31.1 3.2 37 1271-1307 4-40 (41)
115 KOG3192 Mitochondrial J-type c 47.0 20 0.00044 40.9 3.8 43 1540-1582 22-72 (168)
116 KOG2759 Vacuolar H+-ATPase V1 45.4 6.2E+02 0.013 33.8 16.6 291 2026-2352 83-422 (442)
117 KOG2023 Nuclear transport rece 44.4 1.1E+02 0.0024 42.1 10.2 88 2310-2436 228-315 (885)
118 cd00824 PTBI IRS-like phosphot 43.3 69 0.0015 34.8 6.9 73 138-224 20-96 (104)
119 KOG1222 Kinesin associated pro 41.6 89 0.0019 41.3 8.6 68 2326-2435 373-440 (791)
120 PF08045 CDC14: Cell division 39.3 41 0.00088 41.8 5.1 76 1073-1148 114-190 (257)
121 PF05536 Neurochondrin: Neuroc 39.1 1.2E+02 0.0025 41.8 9.8 129 2035-2170 82-214 (543)
122 PF00514 Arm: Armadillo/beta-c 38.2 65 0.0014 28.5 4.9 39 2126-2168 2-40 (41)
123 KOG1862 GYF domain containing 37.7 34 0.00073 47.9 4.6 46 1169-1214 201-246 (673)
124 PF03224 V-ATPase_H_N: V-ATPas 36.5 2.9E+02 0.0063 35.1 12.2 97 1699-1817 167-269 (312)
125 PF06371 Drf_GBD: Diaphanous G 36.3 71 0.0015 36.9 6.4 55 498-552 132-186 (187)
126 cd01202 FRS2 Fibroblast growth 36.2 82 0.0018 34.0 6.0 83 126-224 8-94 (102)
127 PF15277 Sec3-PIP2_bind: Exocy 36.0 39 0.00083 35.7 3.7 77 33-115 1-87 (91)
128 COG5064 SRP1 Karyopherin (impo 35.8 1.1E+03 0.024 30.7 16.8 76 2072-2148 346-426 (526)
129 cd00256 VATPase_H VATPase_H, r 35.3 9.9E+02 0.021 32.3 16.9 170 2287-2519 140-314 (429)
130 COG1076 DjlA DnaJ-domain-conta 35.1 33 0.00072 40.0 3.4 42 1541-1582 16-65 (174)
131 KOG2160 Armadillo/beta-catenin 31.7 2.9E+02 0.0062 36.0 10.8 68 2109-2183 97-164 (342)
132 cd01273 CED-6 CED-6 Phosphotyr 29.1 1.6E+02 0.0035 33.4 7.4 35 136-170 52-86 (142)
133 KOG0724 Zuotin and related mol 28.8 52 0.0011 42.0 4.0 52 1540-1592 4-62 (335)
134 PF04858 TH1: TH1 protein; In 28.0 6.7E+02 0.015 35.1 14.0 168 2022-2197 377-565 (584)
135 PF08167 RIX1: rRNA processing 27.2 86 0.0019 36.3 4.9 61 1241-1312 85-147 (165)
136 cd01267 CED6_AIDA1b Phosphotyr 26.9 2E+02 0.0043 32.1 7.5 79 135-221 41-123 (132)
137 smart00310 PTBI Phosphotyrosin 26.5 1.8E+02 0.004 31.4 6.7 70 140-223 21-94 (98)
138 KOG2171 Karyopherin (importin) 26.3 7.1E+02 0.015 36.9 14.0 112 2070-2195 325-442 (1075)
139 KOG1824 TATA-binding protein-i 25.6 2.4E+02 0.0052 40.6 9.0 128 526-677 695-824 (1233)
140 cd01210 EPS8 Epidermal growth 25.2 1.7E+02 0.0037 33.0 6.4 82 133-219 35-120 (127)
141 cd00836 FERM_C FERM_C domain. 23.9 1.4E+02 0.0031 31.1 5.4 58 36-103 15-72 (92)
142 COG4687 Uncharacterized protei 23.3 91 0.002 34.1 3.7 84 25-115 10-96 (122)
143 KOG1060 Vesicle coat complex A 21.9 3.7E+02 0.0079 38.2 9.6 153 2026-2194 320-484 (968)
144 PF04858 TH1: TH1 protein; In 21.0 7.6E+02 0.016 34.6 12.5 111 2391-2510 419-536 (584)
145 PF09380 FERM_C: FERM C-termin 20.6 1.3E+02 0.0028 31.1 4.3 56 39-103 8-63 (90)
146 PF08045 CDC14: Cell division 20.5 1.6E+03 0.035 28.4 14.1 95 498-615 107-206 (257)
147 KOG2023 Nuclear transport rece 20.2 93 0.002 42.7 3.8 39 1278-1316 127-165 (885)
No 1
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=4630.47 Aligned_cols=2157 Identities=33% Similarity=0.521 Sum_probs=1976.2
Q ss_pred CCCCCCCceEEEEEEEeecccccceEEEEeecCeeeeeCCCCcccccccccccccccccccccCCCC---CCcEEEEEee
Q 000056 13 HPPPEETEYLARYLVVKHSWRGRYKRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDN---ANEFNISVRT 89 (2526)
Q Consensus 13 ~~~~~~~~~~a~y~vtKhSWrgkYkRif~Ig~~~i~T~nP~tlevTN~W~y~~d~~~i~p~~~~~~~---~~eF~i~~rk 89 (2526)
++.++||+|+|||+|||||||||||||||||+.+|+||||+|++|||||.| +||++++|..+.+++ ++||+|++|+
T Consensus 2 ~~~~~e~~~~a~ylv~khsw~g~ykri~~i~s~~i~t~~pntl~itn~~~~-~~f~~~~pl~~~~~~~s~~~e~~i~vr~ 80 (2235)
T KOG1789|consen 2 AQFCSENRDIACYLVTKHSWKGKYKRVFSIGTLAITTYNPNTLEITNQWLY-EDFLSVKPLRNGGSNDSKQDEYKIHVRN 80 (2235)
T ss_pred CcccccchhhhheeeeecccccceeEEEEecccceEeecCcceeeechhhh-hcccccCcccCCCCccccCceeEEEEec
Confidence 578999999999999999999999999999999999999999999999999 899999998766543 3599999999
Q ss_pred cCCCcccceeeechhhhHHHHHHHHhhhhhcccccCCCcceecccCCcccceEEEEeeceEEEecCCCCceEEEeeccCC
Q 000056 90 DGRGKFKAFKFSSRFRASILTELHRIRWVRLNAVAEFPVLHLRRRNSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDM 169 (2526)
Q Consensus 90 ~~~~K~~~mkFss~~Ra~lLT~l~r~r~~~~~~~~~f~~~~~~~~k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~ 169 (2526)
+ ||++.|||||+||++|||+++|+ +..++++.|.+++++++|.+|+|.+|.||-. ++|.-+|.+|||+|
T Consensus 81 ~--gk~~~m~fss~~~~~ilt~~l~~--~~~~~~~~f~~l~~~~~~~~w~~~~~~it~~-------~~~~~~~~~d~r~~ 149 (2235)
T KOG1789|consen 81 R--GKNNDMRFSSDYTTDILTHCLQF--STKFADKNFEPLTVTAFKQSWSDRRIPVTLR-------ANASCLEQIDNRGV 149 (2235)
T ss_pred C--CccccccccccchHHHHHHHHHh--hhhccccccceEEEeecccccccccceeEEE-------ecCcchheecccCc
Confidence 7 47999999999999999999655 4788999999999999999999777776643 45556666666666
Q ss_pred CccceeeeccccCCCC-CCCcEEEeeccCCCccccccCCCCChHHHHHHHHHHHhhhcCeEEEecCCCCCCHHHHHHHHH
Q 000056 170 DSPAIVLLSDAYGKRS-ETGGFVLCPLYGRKSKAFQAAPGTTNSAIVSSLTKTAKSMVGLSLSVDSSQPLSVAEYIKRRA 248 (2526)
Q Consensus 170 ~~~~i~~l~d~~~~~~-~~ggfvl~~~~g~~~r~~l~~~~~~~~~ii~~i~~~A~~~~G~~i~~~~~~~it~~~~~~~R~ 248 (2526)
.+++|..++|.|-+|. +.-||++||+||+++|.|.+ + .++++|+++|.+.|+.++|+-+.++++ .++.++|...|+
T Consensus 150 ~~~~~~~~~~~~~~k~~d~~g~~~~~~~~~~~~~~~a-~-s~n~~~v~~~~~~a~~~igi~~~i~~~-ql~~~~~~~tr~ 226 (2235)
T KOG1789|consen 150 VVQSYPYKNIRSIGKVSDCPGGFVVDVGEHRRRHMFA-S-SNNEELVKEIRRLASDNIGIIVPIAKE-QLTLEDFMRTRL 226 (2235)
T ss_pred cccceeeechhhhccccCCCCeeEecccchhhhhHhh-c-cCcHHHHHHHHHHhhhceeEEEEcchh-hhhhHHHHHHHH
Confidence 6666666666553333 55677789999998876554 4 489999999999999999999999985 789999999999
Q ss_pred hhhcCCC-CCcccceeEEEEeecccCcccccCcccccCCCCCCCCCCCcceEEEEeccceeeeecCCccceEEeecccce
Q 000056 249 KEAVGAD-ETPCGGWSVTRLRSAAHGTLNVSGLSLGIGPKGGLGEHGGAVSRQLILTRVSLVERRPDNYEAVIVRPLSAV 327 (2526)
Q Consensus 249 ~~~~~~~-~ts~~ef~V~k~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~v~R~L~Lt~~~lvERdp~tY~vv~~rpL~~i 327 (2526)
|+.+.++ +||++||+|+||+ |+..-||+|+||||++||||||.+||+||++|||++|
T Consensus 227 ~~~~~~~e~t~~~~~~is~~~----------------------~~~~mpv~~~l~ls~~~~ier~~~~y~vi~~~pl~~i 284 (2235)
T KOG1789|consen 227 GLCSRDEELTSYAEFKISKIT----------------------RRNEMPVRRLLCLSETCIIERDLATYAVICATPLKHI 284 (2235)
T ss_pred hhhhcccccCCcceEEeeeec----------------------ccccccHHHHHHHhHhHHhhhhccceeEEEecchhhH
Confidence 9987754 6999999999994 1356799999999999999999999999999999999
Q ss_pred eEEeecCCCCceEEEEecCCccceeeccCchhHHHHHHHHHHHhhCCCCeeeecccCCCCCccCCCCcccccccccCCCC
Q 000056 328 SSLVRFAEEPQMFAIEFNDGCPIHVYASTSRDSLLAAVRDVLQTEGHYPVPVLPRLTMPGHRIDPPCGVVHMQVRKQRPV 407 (2526)
Q Consensus 328 ~aLVR~~~dpQ~f~IE~~dG~~~r~Y~s~~RD~LLAslLD~~rasGn~~V~V~~~~t~rg~r~~p~~~~~~~~~~p~~~~ 407 (2526)
.||||+++|||+|+|||.||| .+.|..+.||-.+++++|++|++||+.|.|.....
T Consensus 285 ~~lvr~~~~pq~f~ie~~~g~-~~~~~~~~~~l~~~s~~~~i~~~~~~~~~i~gh~~----------------------- 340 (2235)
T KOG1789|consen 285 VCLVRSEKDPQQFIVEYENGD-GRAYVAAERDLILASLLDGIRASGNNEVFVCGHRF----------------------- 340 (2235)
T ss_pred HHHHhcccCchheEEEecCCC-cceeecccchhhhhhccCccCCCCCceEEEecchh-----------------------
Confidence 999999999999999999998 99999999999999999999999999999976333
Q ss_pred CCchhHHHHHHHHHHHhhhhhhhcCCCCCchHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHhCCCCCCCCCCCCC
Q 000056 408 ADMESTSMHLKHLAAVAKDAVAESGQVSGSRAKLWRRIREFNACIPYSGVPPSVEVPEVTLMALITMLPSTPNLPPESPP 487 (2526)
Q Consensus 408 ~d~E~es~~Lk~l~~~~~~~~~~~g~~p~~~~~~~~~v~~FNAnIpysGl~~~~~~~~~~~~al~~~l~~~~~~~~~~~~ 487 (2526)
.|-|.-+.|+++|++.+|+++..||..|+.++++|++||||||||||||++++ +.+|+.+|++..+++.+++++.+.+|
T Consensus 341 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~r~~~~ir~fna~ipysg~~~~-~~~e~~~~~~~~~~~~~~~~~v~~~~ 419 (2235)
T KOG1789|consen 341 ERNLRVIPFSTNLDEDSESQCMKHIIAPPPGLRRCDLIRRFNANVPYSGLRFS-KSHEGFFSENKGKVIVNAIEAVLMEN 419 (2235)
T ss_pred hhcceeccchhhhhhhhHHHHHcCCCCCCccchHHHHHHHhccCCCccCCccc-cCccchHHhhccccccCccccccCCC
Confidence 44455566777777777778888888888889999999999999999999999 78899999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhcHHHHHHhhccchhHHHHHHhhccCCcchHHHH----HHHHHHHhcCCCCCCcccc
Q 000056 488 LPPPSPKAAATVMGFVACLRRLLTSRTAASHVMSFPAAVGRIMGLLRNGSEGVAAEA----AGLIAILIGGGSGDTNMLT 563 (2526)
Q Consensus 488 ~~~~~~~~a~~~~~~~~aLrRL~as~~gf~~~~~~p~~~~~v~~~L~~~~~~v~~~a----~~~l~~l~~~~~~~~~~~~ 563 (2526)
+||++++.++++++|+||||||++||.||++||++|+.+.+|+.+++|+.++++.++ +.+||.+|.|||+. +
T Consensus 420 ~~~~~~~~~~~~~~~~~clrrl~~s~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 495 (2235)
T KOG1789|consen 420 YTKDDKEYKHKTEAQLQCLRRLFASKSGFQAFTEVNGVREKLGSLVVRVLSWKSESIDHSTVEALCALMYPMHDQ----Y 495 (2235)
T ss_pred CCCCChHHhhHHHHHHHHHHHHHhcchhhHHHhhchHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHhcCccccc----h
Confidence 999999999999999999999999999999999999999999999999988876554 67788888888888 9
Q ss_pred CchhhhhhhhcccchhcccchhhHHHHHHhhcCCCChhHHHHHHHHHHhhhccCCCCCCCChHHHHHHHHHHHhhhhHHH
Q 000056 564 DSKGEQHATMMHTKSVLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMICEPHSETTQYTVFVELLRQVAGLRRRLF 643 (2526)
Q Consensus 564 d~~~e~~~~~~~nKs~ll~~~~~~~~L~~~l~~~~~~aLv~~a~l~~l~~~lC~P~seTT~~~~f~~ll~~va~~gr~lf 643 (2526)
|+|.|||++++|.||.+|..+++.-+++++++ +||+|++|+|++||||++|.||||||.|++|+.+|++|+.+||+||
T Consensus 496 ~~r~e~~~~~~~~~s~~f~~~~~~~i~~~~~~--s~~~l~~~~~~~~~~~~vc~p~~ett~~~~f~~~l~~i~~~~r~~f 573 (2235)
T KOG1789|consen 496 ELRIEQLNKQSLMSSPKFVENLLDLIVLHVDR--STGWLVIASMLNFLTFSVCSPYSETTAGDTFDHILKLVSLRGRSFF 573 (2235)
T ss_pred hhHHHHHHHHHhhccHHHHHhchheEEEeecc--cccHHHHHHHHHHHHhcccCCCcccccccHHHHHHHHHHHhhhHHH
Confidence 99999988888888887777777777777777 6999999999999999999999999999999999999999999999
Q ss_pred HhhCCChhhHHhHHHHHHHHHHhhcHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChhHHhhhh
Q 000056 644 ALFGHPAESVRETVAVIMRTIAEEDAIAAESMRDAALRDGALLRHLLHAFFLPAGERREVSRQLVALWADSYQPALDLLS 723 (2526)
Q Consensus 644 ~Lf~hp~~~i~~~aglimrai~Ee~~~~a~~mq~~AL~eGall~HL~~Alf~~~~~~r~lsr~LV~lW~~~~~~a~~LL~ 723 (2526)
+|||||+|+|+||+|||||+|||||+..+++||++||+|||+|+||..||..+..++||||||||+||+++||+|.|||.
T Consensus 574 ~lf~~p~~si~~~~~~imr~i~ee~~i~~~sm~~~al~~ga~l~hl~~~~~l~~~~~~~~s~~li~lw~~~~q~a~dll~ 653 (2235)
T KOG1789|consen 574 RLFQCPSMTIVKGAGMVMRAIIEEADVETKSMQMLALSEGAFLTHLFMSLLLRVMTNKQLSGHLISLWIADNQQANDLLI 653 (2235)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccchHHHHHHHHHhhhhhhhhHHhhhHHHHHhhccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhHhhhcccCCCCCCccchhcccchhHHHHHHHHHhhcCCCCCCcccccccCCcccccccCCcccccccccCCCCC
Q 000056 724 RVLPPGLVAYLHTRSDGVLSEDANLEGSLTSRRQRRLLQQRKGRPGRGIASQEHSVPYVNNVEANDPTRQKTSAFRGPGS 803 (2526)
Q Consensus 724 RilP~GLl~yL~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 803 (2526)
|++||||++||+|++++++.|.+. +. .+.|-+. ++.++.+.+ +| +.
T Consensus 654 r~lp~gl~~y~~s~~~~~v~~~d~-~~---~~~n~da--------a~~~s~~~~-~~---------------------~~ 699 (2235)
T KOG1789|consen 654 RCLPRGLLNYMESDEKVPVNEKDL-LI---VRNNFDA--------ASNETKQNA-MK---------------------EK 699 (2235)
T ss_pred HhCCHHHHHhhhcCCCCCcCchhh-cc---cccCchh--------hhhhhhhcc-ch---------------------hh
Confidence 999999999999998888877654 22 1222221 121111000 00 00
Q ss_pred CcccCCCCCCCCcccCCCccccccCccccCCCCCCCCCCCCcccccccCCCccCccccCCCCcCcCCCccccccCCCCCC
Q 000056 804 HQTSNLDPSSGQASAFQSPAARSGENLVSDIPYMGFSQNDHPAVVATADSPLRGVHESLDPKATSSVDSDANAVGFQNTD 883 (2526)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 (2526)
. +++.+.+ .+++|.+. ++|+. ++..
T Consensus 700 f--------------------------------------~~~~~sa---------~~g~~~~i---~~~~~-----~~~~ 724 (2235)
T KOG1789|consen 700 F--------------------------------------DQLRVTA---------EAGLERFV---QHWDL-----EQKL 724 (2235)
T ss_pred h--------------------------------------cCccccc---------cccHHHHH---HHhhh-----hhhc
Confidence 0 0000000 11222222 23332 5556
Q ss_pred CCCCcceeecccccCCCcccCCHHHHHHHHhcccCCCccccCHHHHHHHHHHHHHHHhhhhHHhhhcccCCCCCCccccc
Q 000056 884 IPAPAQVVVESTPVGSGRLLLNWPEFWRAFSLDHNRADLVWNERTRQELREALQAEVHKLDVEKERTEDIVPGGATLETM 963 (2526)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~nW~~f~~~~~~Dh~~pdlIWn~~tR~ELr~aL~~Ei~~f~~~~~~~~~~~~g~~~~~~~ 963 (2526)
.+.|.|++.+++.+++++...||+.||.+| ++|||||++||+|||+||.+|.+.+..+||++.+|
T Consensus 725 ~~~p~~vi~e~~~~~~~~~~l~~r~~~~~~-----~adliwne~tr~e~~~a~~~e~~~l~~eke~~~~~---------- 789 (2235)
T KOG1789|consen 725 NFLPKRVIDEKQQQRQQPVVLRKRRNRVRP-----NADLIWNEKTREEFRHAMDTETRALISEKEQAPTG---------- 789 (2235)
T ss_pred ccccHHHhhHHhhhccCCeeeehhhhhcCc-----CcccccchhhHHHHHHHHHHHHHHhhhhhhhCCCC----------
Confidence 789999999999999999999999999999 89999999999999999999999999999987552
Q ss_pred cCCCCCCccccccCcceeeccCcccceeeccchhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHhcccccccccCCCC
Q 000056 964 TGQDSVPQISWNYPEFSVSYPSLSKEVCVGQYYLRLLLESGSSGRAQDFPLRDPVAFFRALYHRFLCDADIGLTVDGAIP 1043 (2526)
Q Consensus 964 ~~~~~~~~i~WN~~eF~V~Y~sL~~Ev~vg~yYLRlLle~~~~~~~~~~~I~~p~~Ff~~ly~rfL~~~~~~~~~~~~~~ 1043 (2526)
..|+|||.||+|+|+||.+|+|||+||||+||++.+. .++||+||++||++|||||+|+.|.
T Consensus 790 ------~pi~wn~sef~i~y~sl~~ei~ig~yylrlll~~~~~---~~~p~~~p~~ff~~~yhrf~~~~~~--------- 851 (2235)
T KOG1789|consen 790 ------LPIAWNHTEFQIRYPSLLEEIKIGDYYLRLLLIEADE---NATPIHNPLEFFNNVYHRFLLSTKV--------- 851 (2235)
T ss_pred ------CccccccceeeeechhhHhhhhHhHHHHHHHHHhccC---CCCcccCHHHHHHHHHHHHhccccc---------
Confidence 3599999999999999999999999999999999988 4899999999999999999998864
Q ss_pred CcCCCCCccCcCCCCcCCCCCCCchhHHHHHHHHHHHHHhhhcccCCCCChhHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 000056 1044 DELGASDDWCDMGRLDGFGGGGGSSVRELCARAMAIVYEQHYTTIGPFEGTAHITVLLDRTDDRALRHRLLLLLKVLMKV 1123 (2526)
Q Consensus 1044 ~~l~~s~d~~~~~~~~~~~~~~~~~~r~lcL~am~ivY~r~~~~ig~f~~~~y~~~Ll~~~~d~~~R~~Lll~~~~L~~~ 1123 (2526)
+|||||+|||+|+|+|||.+||||.|++|++.|+++|.||.+||||++++.+|.++
T Consensus 852 ------------------------~~~~lc~ramai~y~~h~~tig~f~~s~~~~~~~~~~~~~~~r~~l~lll~~l~~~ 907 (2235)
T KOG1789|consen 852 ------------------------DMKCLCLRAMAITYSRHHMTIGAFQDSKYFVEMLQKCINPLERDHLVLLLSKLALN 907 (2235)
T ss_pred ------------------------cHHHHHHHHHHHHHHHhcccccccCccHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Confidence 29999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHhCCchHHHHHHHhhhhccCCCccccccchhhcccccCCcceeEeecCCCcccccccHHHHHHHHhcCCcCc
Q 000056 1124 LANIEACVLVGGCVLAVDLLTVVHETSERTAIPLQSNLLAATAFMEPFKEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDW 1203 (2526)
Q Consensus 1124 ~~N~~~~v~~~G~~llvdLltlah~~~~r~~~~~q~n~i~a~~~~~~~KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~ 1203 (2526)
+.||++||-.||+.++|||++++|+|++|+.||+|+|+|+|+++|+++|||||.+++|+++||++++.|+.+|.++.|++
T Consensus 908 ~~nv~~~ii~~~~~l~vdl~~~~h~~~~r~~i~~qsn~i~asa~~~~~~ew~y~dk~~~~vgp~~~~~~~sl~s~k~i~~ 987 (2235)
T KOG1789|consen 908 KDNVRELIISNILPLLVDLCVLAHLHVQRAKVQNQTNVIEASAEQMAEEEWYYHDKDAKQVGPLSFEKMKSLYTEKTIFE 987 (2235)
T ss_pred hccchhheeecchHHHHHHHHHHHHhhhccCCccchhHHHhhhhhcCchhheeecCCccccCchhHHHHHHHhcccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecccCcchhhchhhhhHHHHhhccCCcCChhhHHHHHHHHHHHhhccccCCCCCCCccccCcchhhhccCCCchHH
Q 000056 1204 TTRCWASGMLDWKKLRDIRELRWALAVRVPVLTPTQVGEAALAILHNMVSAHSDLDDAGEIVTPTPRVKWILSSSRCLPH 1283 (2526)
Q Consensus 1204 ~T~vWa~GM~~W~~l~~ipeLrw~la~g~p~l~~~~l~~~~L~iL~~~~~~~p~~d~~g~ii~P~Prvkr~Ls~~~~Lph 1283 (2526)
+|.||+.||++|+++++||||||+++...|+|++++++.+||+||+.||++||++|++|+||+|+|+|||+||++.||||
T Consensus 988 ~s~~~a~gm~~w~~l~~i~~~rw~v~~~ipv~~~s~~~~~~l~~L~~Mc~~fpsrD~~~~IvrP~P~VKR~LS~~~CLPH 1067 (2235)
T KOG1789|consen 988 KSQIWAAGMDKWMSLAAVPQFRWTVCQQIPVMNFTDLSVLCLDTLLQMCEFFPSRDSHDCIVRPMPSVKRQLSEPVCLPH 1067 (2235)
T ss_pred HHHHHHhhhhHHHhhhhhhhhhhhhhhcccccCHHHHHHHHHHHHHHHHhhCCCcccCCCeeccChHHHHHhcCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCchHHHHHHHHHHHHHhhChHHHHHHHhhhhhhhhhhcCCCChhhHHHHhhhhhhhhcccCCccccccCCcc
Q 000056 1284 IAQAMLSGEPSIVEAAAALLKAVVTRNPKAMIRLYSTGAFYFALAYPGSNLYSIAQLFSVTHVHQAFHGGEEAAVSSSLP 1363 (2526)
Q Consensus 1284 lvQlLLt~~p~lve~~~~LL~~l~~~n~~~~~~Ly~tG~f~f~L~y~gsn~l~ia~lL~~~H~~Qa~~~~~~~~~ss~~~ 1363 (2526)
|+|+||||+|.|||+++.||+.+|+|||. |+|||++|||||+|||+|||++|||+||++||++|||++++ +++.+
T Consensus 1068 I~QlLLt~eP~iVE~vA~LLy~vmqdNp~-lpRLYlsGvFyFilmY~GSNvlpiArfl~yTH~kQAF~st~----~~~~~ 1142 (2235)
T KOG1789|consen 1068 IVQLLLTYEPQIVERVALLLYLVMQDNPF-LPRLYLSGVFYFILMYNGSNVLPIARFLHYTHMKQAFRSTL----PQFEG 1142 (2235)
T ss_pred HHHHHhcCChhHHHHHHHHHHHHHhcCch-hHHHHhhchhheeeeeCCCchhhHHHHHHHHHHHHHHHhcc----ccccc
Confidence 99999999999999999999999999995 99999999999999999999999999999999999999765 57889
Q ss_pred hhhhhhhcCCCcHHHHHHHHhcCHHHHHHHhccCCCCcccccchhhhhHHHHHHHHHHhcCcccccccccccccccCCCC
Q 000056 1364 LAKRSVLGGLLPESLLYVLERSGPAAFSAAMVSDSDTPEIIWTHKMRAENLIRQVLQHLGDFPQKLSQHCHSLYEYAPMP 1443 (2526)
Q Consensus 1364 ~~~rSvL~~lLPe~lv~~Le~~gp~~fa~~l~g~~dtPevIWn~~MR~~~Li~~i~~hl~df~~rL~~~~~alY~~~p~p 1443 (2526)
+.+|||||.+|||+|++|||+|||++|+++|+||+||||+|||++||+ +||++|.+|++||++||++|+|++|+|||||
T Consensus 1143 ~~qRSvLG~lLPEa~~~yLE~ygPekFae~flgefDTPEiIW~~~MRr-~lIe~ia~HLaDf~~rL~sn~raLYqYcPiP 1221 (2235)
T KOG1789|consen 1143 QRQRSVLGTLLPEAATFYLEQYGPEKFAEVFLGEFDTPEIIWNTAMRR-HLIERIAVHLADFSHRLTSNVRALYQYCPIP 1221 (2235)
T ss_pred HHHHHHHhhhcHHHHHHHHHhhChHHHHHHHhccCCChHHHHHHHHHH-HHHHHHHHHHhccCHhHHHhHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred CCcccchhhhhhhhHHHHHHhhhhccCCCCChhhhHHHHHHHHHHHHHHhhcCCCCCChHHHHHHhcccccCCCCCCccc
Q 000056 1444 PVTYPELKDEMWCHRYYLRNLCDEIQFPNWPIVEHVEFLQSLLVMWREELTRRPMDLSEEEACKILEISLDDVSSDDSHK 1523 (2526)
Q Consensus 1444 ~i~Y~eL~~El~C~~yYLr~lcd~~rfP~wpi~dP~~fL~sll~~wr~el~~~~~~~s~~~ay~iLgv~~~~~~~~~~~~ 1523 (2526)
+|.||||++|||||.|||||+||+++||||||.||+.||++++.+|++|++|+|+.||+++||+||+++.+..+
T Consensus 1222 ~i~YPeL~~ElfCh~YYLr~LCD~~rFPdWPI~dpV~fL~~~L~~W~~ElekKP~~mS~d~A~eiL~i~l~n~~------ 1295 (2235)
T KOG1789|consen 1222 LIDYPELAQELFCHVYYLRHLCDKQRFPDWPIRDPVPFLRCCLATWYNELEKKPATMSVDLAREILSVDLTNEE------ 1295 (2235)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhccccCCCCcccCchHHHHHHHHHHHHHHhcCCCccchHHHHHHhccccCCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999964321
Q ss_pred cccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhhc-cccCCCCCChhhHHhhhhhhcc
Q 000056 1524 SYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQA-TMQGLQGPQPWRLLLLLKGQCI 1602 (2526)
Q Consensus 1524 ~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLsd-~~~r~~~p~~~~~~liLr~qr~ 1602 (2526)
.-+.++|||+|||||+||||||||+|+|+|.+||+|||.|+. .....+||+||++.++|++|++
T Consensus 1296 ---------------hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~~ta~~~~GPdP~riiL~LKaQsI 1360 (2235)
T KOG1789|consen 1296 ---------------HDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSSETANNSGGPDPHRIVLCLKAQSI 1360 (2235)
T ss_pred ---------------cccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHhhcCCCCChhHhhHHHHhHHH
Confidence 113389999999999999999999999999999999999995 4567899999999999999999
Q ss_pred cccccCCccCCCccCccccccccccccCCCCCCcccCchhHHHHHHHHHhhhcccCCCchhhHHHhcCHHHHHHHHHHhh
Q 000056 1603 LYRRYGDVLEPFKYAGYPMLLNAVTVDEDDNNFLSSDRAPLLVAASELLWLTCASSSLNGEELVRDGGIQLLSTLLSRCM 1682 (2526)
Q Consensus 1603 ~Ydr~g~~l~py~y~Gy~~Ll~~i~~~~dd~~ffs~~~~~ll~~A~El~~~Tv~~S~lNaeeL~re~G~~~L~~~lsrC~ 1682 (2526)
+|.|||+++.||||+||+||+++|+++++|+.|||..++|++.+|.||+.+||+||+||||||+||||+++|.++|+|||
T Consensus 1361 Ly~Ry~~~L~PyKYAGYPMLi~tiT~e~~D~~lfSk~~~PLL~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv 1440 (2235)
T KOG1789|consen 1361 LYSRYSQELSPYKYAGYPMLIKTITLEAKDEALFSKGGGPLLSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCV 1440 (2235)
T ss_pred HHHHhhhhcCccccCcchhhhhhhhhcccchhhhcCCCCcchHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCccceeehhhhhhhhhhccChHHHHHHHhhcchHHHHHHhhccccchhHHHHHHHHHHHhhCCHHHHHHH
Q 000056 1683 CVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCTELELVPGAVDAALQTIAHVSVSSELQDAL 1762 (2526)
Q Consensus 1683 ~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l~l~~~~~l~~aALe~v~~~a~~~elq~~i 1762 (2526)
+|++++|+|+||+++||+|+||||+|++||++||+++.|+|+|++|||||+++...|+++.+|+|||+.|+++.+||.++
T Consensus 1441 ~Vvt~~s~p~dmav~vc~~v~~c~SVaaQFE~cR~~~~EmPSiI~Dl~r~l~f~~vPr~~~aa~qci~~~aVd~~LQ~~L 1520 (2235)
T KOG1789|consen 1441 PVVTMSSLPDDMAVRVCIHVCDCFSVAAQFEACRQRLMEMPSIIGDLTRLLQFSNLPRLSTAAAQCIRAMAVDTLLQFQL 1520 (2235)
T ss_pred eeeccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHHHhhcCCCcccccCccccccccccHHHHHHHHHHHHHHHHHHhhCcCCCCCCCCccHHHHHHHHHhchHH
Q 000056 1763 LKAGALWFLLPLLLQYDSTAEKSDTNESHGVGASVQIAKNMHAVRAAQALSRLSGLCSNGISIPYNEAAASALRALLTPK 1842 (2526)
Q Consensus 1763 ~~~GVLw~LL~lLf~YD~Tlees~le~~~~~~~~~qivkn~lAk~a~~aL~~L~g~~~d~~~~P~n~~v~~~L~klLpP~ 1842 (2526)
+++|+|||||++||+||||+||++++++|+ +|+|+++|.||+.|+.||+||+|++.|+..+|.|+.++..|..+|||+
T Consensus 1521 fqAG~LWYlLp~Lf~YDyTlEESg~q~Se~--~n~Q~~aNslA~~s~~ALSRL~G~~AdE~~TP~N~T~~~sL~alLTPy 1598 (2235)
T KOG1789|consen 1521 FQAGVLWYLLPHLFHYDYTLEESGVQHSED--SNKQSLANSLARSSCEALSRLAGFRADEENTPDNDTVQASLRALLTPY 1598 (2235)
T ss_pred HHhhhHHHHHHHHhcccccccccCcccccc--chHHHHHHHHHHHHHHHHHHHhccccccccCCCChhHHHHHHHhccHH
Confidence 999999999999999999999999999873 479999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccChHHHHHHhhccCCCcccccchhhHHHHHHHHHHHHhccCCCCCcccccccccccccccCCcEEeeEEEeee
Q 000056 1843 LASLLKDQIPKNLLSKLNTNLESPEIIWNSSTRAELLKFVDQQRASQSPDGSYDLKDSNGFLYEALSKELYVGNVYLRVY 1922 (2526)
Q Consensus 1843 l~~~L~d~~p~~~L~~LnSn~EnPeLIWnn~tRaEL~e~Le~q~~~~~~~~~w~l~~~~~f~Y~~l~~ELvVGGVYLRly 1922 (2526)
+++.|++...+++|++||||.||||+||||+||+||++|++.|++.+.++|.+|...+.+|.|+.|++||+||+||||+|
T Consensus 1599 iAr~Lk~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirVY 1678 (2235)
T KOG1789|consen 1599 IARCLKLETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRVY 1678 (2235)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhccceeeehhhccceeeeeEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHHhhcccCCCCcccccccccccchhhhhccccCCCCCCccccCCCCcccCccccccc
Q 000056 1923 NDQPDFEITEPEAFCVALIDFISYLVHNQSATKSDVQGEESLDGLSSKIVQDKLSLDPSSSKTFELPSDATDSSMNERKV 2002 (2526)
Q Consensus 1923 neqP~~~Lr~Pk~Fl~~LLdfl~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l 2002 (2526)
|+||+|.|..||.|+.+|+|||..+.+...+...|.. .++..-+++.. +++..
T Consensus 1679 NeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~---------------------~s~d~ie~~~~-V~sE~----- 1731 (2235)
T KOG1789|consen 1679 NEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKA---------------------ISDDLIEIDWG-VGSEA----- 1731 (2235)
T ss_pred cCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccc---------------------cccchhhhhcc-cchhh-----
Confidence 9999999999999999999999999988764321110 00111111110 11100
Q ss_pred cccchhcccccccCcchHHHHHHHHHHHHHHHHHHhhCccchhhccccCChhhhhcccCC--CCCCCCChhhHHHHHHHH
Q 000056 2003 NDESLAVSDRKVTGKEDSVMIKNLQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSV--PFAPDSNIPQLCLNVLSL 2080 (2526)
Q Consensus 2003 ~~~s~~~s~~~~~~~~d~e~l~~l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~--~~~~~~~vq~~aL~VL~~ 2080 (2526)
.|... .. -.+++|+|+||+||++.||+++..+.+...+.++|.|+.. ..+..+.+|++||+|++.
T Consensus 1732 --------HgD~l---Ps--~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~ 1798 (2235)
T KOG1789|consen 1732 --------HGDSL---PT--ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILL 1798 (2235)
T ss_pred --------hcCCC---Ch--HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 00100 01 1268999999999999999999999999999999998843 334567899999999999
Q ss_pred hcCChhHHHHHHhhcchHHHHHHHHhhCcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHH
Q 000056 2081 LTTCASCLEAMVADGSSLLLLLQMLHYAPACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAA 2160 (2526)
Q Consensus 2081 ls~n~~CVeaiA~~~~vl~~Ll~lL~~~p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~a 2160 (2526)
+|+|++||+.|+.+. ++..|+.+||+.|++++.+|++||+|+|+++++|+|++|||+.|+|++||++ +.+|+|+++
T Consensus 1799 ~Tan~~Cv~~~a~~~-vL~~LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~---~~~QqRAqa 1874 (2235)
T KOG1789|consen 1799 ATANKECVTDLATCN-VLTTLLTLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLT---NSDQQRAQA 1874 (2235)
T ss_pred HhcccHHHHHHHhhh-HHHHHHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhcc---CcHHHHHHH
Confidence 999999999999876 8999999999999999999999999999999999999999999999999986 489999999
Q ss_pred HHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHh
Q 000056 2161 ASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQM 2240 (2526)
Q Consensus 2161 A~lL~kM~aDklhGPrV~~~L~KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~ 2240 (2526)
|++|+||.+||+|||||+++|.||||.+|+|+|||+| ||+||+||+||||||||||+.||++++.+|.+|+.++|++|+
T Consensus 1875 AeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~P-EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQ 1953 (2235)
T KOG1789|consen 1875 AELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSP-EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQ 1953 (2235)
T ss_pred HHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCH-HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999 788999999999999999999999999999999999999999
Q ss_pred cCCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHH
Q 000056 2241 KGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAA 2320 (2526)
Q Consensus 2241 ~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~A 2320 (2526)
+||.+.|++||++.+++|+.+|+.|||||+|.|+++|+|+|||||+||++|||+++++|++++++++ .++++|.|
T Consensus 1954 k~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh-----~l~lLt~A 2028 (2235)
T KOG1789|consen 1954 KDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQH-----ELDLLTKA 2028 (2235)
T ss_pred cCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccc-----hhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988765 56899999
Q ss_pred HHHHHhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHH
Q 000056 2321 LVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQ 2400 (2526)
Q Consensus 2321 lv~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ 2400 (2526)
+|+|+++||+|+||||+|||+||++.+|+++|. .+++|||||||+
T Consensus 2029 ~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~-----------------------------------s~P~SaiRVlH~ 2073 (2235)
T KOG1789|consen 2029 FVELVRHHPNLADQLPSLGYLPKFCTAMCLQNT-----------------------------------SAPRSAIRVLHE 2073 (2235)
T ss_pred HHHHHHhCcchhhhCCCccchHHHHHHHHhcCC-----------------------------------cCcHHHHHHHHH
Confidence 999999999999999999999999999999873 245999999999
Q ss_pred hhCChhHHHHHhhcCCCCCcchHHHHHHhhccCchHhHHHHHHHHHhcCCccchHHHHHHHhhCcHHHHHHhcccccCCC
Q 000056 2401 LAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGSILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDWRAGGR 2480 (2526)
Q Consensus 2401 ls~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~~la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd~~~~~~ 2480 (2526)
||.|++|++|||+++|+.| +|+++||+.+| +++|||||||||+ |++++||+|+||+|||||||+||||+
T Consensus 2074 Lsen~~C~~AMA~l~~i~~-~m~~mkK~~~~---~GLA~EalkR~~~---r~~~eLVAQ~LK~gLvpyLL~LLd~~---- 2142 (2235)
T KOG1789|consen 2074 LSENQFCCDAMAQLPCIDG-IMKSMKKQPSL---MGLAAEALKRLMK---RNTGELVAQMLKCGLVPYLLQLLDSS---- 2142 (2235)
T ss_pred HhhccHHHHHHhccccchh-hHHHHHhcchH---HHHHHHHHHHHHH---HhHHHHHHHHhccCcHHHHHHHhccc----
Confidence 9999999999999999766 56666666543 3599999999999 78999999999999999999999986
Q ss_pred CCCccccccccccccchhHHHHHHHHHHH
Q 000056 2481 NGLSSQMKWNESEASIGRVLAIEVRMMSI 2509 (2526)
Q Consensus 2481 ~g~~~~~~~~~~~a~~~~v~a~~v~~~~~ 2509 (2526)
||++.|+|+++.|+|++++++.|++++-
T Consensus 2143 -tL~~~~~~aas~A~Iv~aLk~~~~~l~v 2170 (2235)
T KOG1789|consen 2143 -TLNGVSNGAAARAEIVDALKSAILDLKV 2170 (2235)
T ss_pred -cccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999998874
No 2
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-100 Score=933.95 Aligned_cols=922 Identities=19% Similarity=0.264 Sum_probs=734.7
Q ss_pred HHHHHHHhcccCCCccccCHHHHHHHHHHHHHHHhhhhHHhhhcccCCCCCCccccccCCCCCCccccccCcc-eeeccC
Q 000056 907 PEFWRAFSLDHNRADLVWNERTRQELREALQAEVHKLDVEKERTEDIVPGGATLETMTGQDSVPQISWNYPEF-SVSYPS 985 (2526)
Q Consensus 907 ~~f~~~~~~Dh~~pdlIWn~~tR~ELr~aL~~Ei~~f~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~WN~~eF-~V~Y~s 985 (2526)
+.|...|.+|+++|++|||++||+.|.+.+.+|+.+|.++... +++..|+|.++ .|+||.
T Consensus 1167 ekFae~flgefDTPEiIW~~~MRr~lIe~ia~HLaDf~~rL~s-------------------n~raLYqYcPiP~i~YPe 1227 (2235)
T KOG1789|consen 1167 EKFAEVFLGEFDTPEIIWNTAMRRHLIERIAVHLADFSHRLTS-------------------NVRALYQYCPIPLIDYPE 1227 (2235)
T ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhccCHhHHH-------------------hHHHHHHcCCCCCCCcHH
Confidence 5688899999999999999999999999999999999998662 37889999999 799999
Q ss_pred cccceeeccchhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHhccccc---cccc----------CCC-CCcC-----
Q 000056 986 LSKEVCVGQYYLRLLLESGSSGRAQDFPLRDPVAFFRALYHRFLCDADIG---LTVD----------GAI-PDEL----- 1046 (2526)
Q Consensus 986 L~~Ev~vg~yYLRlLle~~~~~~~~~~~I~~p~~Ff~~ly~rfL~~~~~~---~~~~----------~~~-~~~l----- 1046 (2526)
|.+|++|+.||||+|||+.++ |+|||+||++|++.++..|..+.++| |+++ |+. -|++
T Consensus 1228 L~~ElfCh~YYLr~LCD~~rF---PdWPI~dpV~fL~~~L~~W~~ElekKP~~mS~d~A~eiL~i~l~n~~hD~~~Kirr 1304 (2235)
T KOG1789|consen 1228 LAQELFCHVYYLRHLCDKQRF---PDWPIRDPVPFLRCCLATWYNELEKKPATMSVDLAREILSVDLTNEEHDKPAKIRR 1304 (2235)
T ss_pred HHHHHHHHHHHHHHHhccccC---CCCcccCchHHHHHHHHHHHHHHhcCCCccchHHHHHHhccccCCCCcccHHHHHH
Confidence 999999999999999999999 99999999999999999999999987 4442 111 2231
Q ss_pred -------CCCCccCcCCC--------CcCC------CCCCCch-hH-HHHHHHHHHHHHhhhcccCCCCChhHHHHHHhh
Q 000056 1047 -------GASDDWCDMGR--------LDGF------GGGGGSS-VR-ELCARAMAIVYEQHYTTIGPFEGTAHITVLLDR 1103 (2526)
Q Consensus 1047 -------~~s~d~~~~~~--------~~~~------~~~~~~~-~r-~lcL~am~ivY~r~~~~ig~f~~~~y~~~Ll~~ 1103 (2526)
-++||+|+.|| +|+| ++.+|++ +| .|||||++|+|.||.+++.||||+||.+.+=..
T Consensus 1305 qY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~~ta~~~~GPdP~riiL~LKaQsILy~Ry~~~L~PyKYAGYPMLi~ti 1384 (2235)
T KOG1789|consen 1305 QYYKLAAKYHPDKNPEGREMFERVNKAYELLSSETANNSGGPDPHRIVLCLKAQSILYSRYSQELSPYKYAGYPMLIKTI 1384 (2235)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHhhcCCCCChhHhhHHHHhHHHHHHHhhhhcCccccCcchhhhhhh
Confidence 16779999999 2333 5677775 55 999999999999999999999999998755444
Q ss_pred cCCH-------HHHHHHHHHHHH-----HHhhhhcHHHHHHhCCchHHHHHHHhhhhccCCCccccccchhhcccccCCc
Q 000056 1104 TDDR-------ALRHRLLLLLKV-----LMKVLANIEACVLVGGCVLAVDLLTVVHETSERTAIPLQSNLLAATAFMEPF 1171 (2526)
Q Consensus 1104 ~~d~-------~~R~~Lll~~~~-----L~~~~~N~~~~v~~~G~~llvdLltlah~~~~r~~~~~q~n~i~a~~~~~~~ 1171 (2526)
|.|. -.+..|+-.... +..+.+|++++.+.||+++|+.++.+|...+++++.|....++.++..+.
T Consensus 1385 T~e~~D~~lfSk~~~PLL~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~vc~~v~~-- 1462 (2235)
T KOG1789|consen 1385 TLEAKDEALFSKGGGPLLSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVRVCIHVCD-- 1462 (2235)
T ss_pred hhcccchhhhcCCCCcchHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCcchhhHHHHHHH--
Confidence 4432 233345544444 45889999999999999999999999999999998887776666665541
Q ss_pred ceeEeecCCCcccccccHHHHHHHHhcCCcCcCCceecccCcchhhchhhhhHHHHhhccCCcCChhhHHHHHHHHHHHh
Q 000056 1172 KEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKLRDIRELRWALAVRVPVLTPTQVGEAALAILHNM 1251 (2526)
Q Consensus 1172 KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~W~~l~~ipeLrw~la~g~p~l~~~~l~~~~L~iL~~~ 1251 (2526)
-..-+.+..+-|.-+ +|+...|-|+++.
T Consensus 1463 ------------------------------------------c~SVaaQFE~cR~~~---------~EmPSiI~Dl~r~- 1490 (2235)
T KOG1789|consen 1463 ------------------------------------------CFSVAAQFEACRQRL---------MEMPSIIGDLTRL- 1490 (2235)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHH---------hhhhHHHHHHHHH-
Confidence 011112222222222 2444455555554
Q ss_pred hccccCCCCCCCccccCcchhhhccCCCchHHHHHhhhcCCchHHHHHHHHHHHHHhhChHHHHHHHhhhhhhhhhh---
Q 000056 1252 VSAHSDLDDAGEIVTPTPRVKWILSSSRCLPHIAQAMLSGEPSIVEAAAALLKAVVTRNPKAMIRLYSTGAFYFALA--- 1328 (2526)
Q Consensus 1252 ~~~~p~~d~~g~ii~P~Prvkr~Ls~~~~LphlvQlLLt~~p~lve~~~~LL~~l~~~n~~~~~~Ly~tG~f~f~L~--- 1328 (2526)
.+ +..-|.++..+++-+..+.. .+..+..|+..|+.||+|.
T Consensus 1491 l~-----------------------------------f~~vPr~~~aa~qci~~~aV-d~~LQ~~LfqAG~LWYlLp~Lf 1534 (2235)
T KOG1789|consen 1491 LQ-----------------------------------FSNLPRLSTAAAQCIRAMAV-DTLLQFQLFQAGVLWYLLPHLF 1534 (2235)
T ss_pred HH-----------------------------------hccccHHHHHHHHHHHHHhh-hHHHHHHHHHhhhHHHHHHHHh
Confidence 12 55667888999999988777 5777999999999999995
Q ss_pred ---cC--CCChhh----HHHHhhhhhhhhc---------ccCCccccccCCcchhhhhhhcCCCcHHHHHHHHhcCHHHH
Q 000056 1329 ---YP--GSNLYS----IAQLFSVTHVHQA---------FHGGEEAAVSSSLPLAKRSVLGGLLPESLLYVLERSGPAAF 1390 (2526)
Q Consensus 1329 ---y~--gsn~l~----ia~lL~~~H~~Qa---------~~~~~~~~~ss~~~~~~rSvL~~lLPe~lv~~Le~~gp~~f 1390 (2526)
|| .||+.. ..+-++..|.+|+ |..+|+. .+.+.+.|.+|+.||+|.+...|.-......
T Consensus 1535 ~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE~~---TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~i 1611 (2235)
T KOG1789|consen 1535 HYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADEEN---TPDNDTVQASLRALLTPYIARCLKLETNDMV 1611 (2235)
T ss_pred cccccccccCccccccchHHHHHHHHHHHHHHHHHHHhcccccccc---CCCChhHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 33 233222 1244455555555 3345533 6788999999999999999999999999999
Q ss_pred HHHhccCCCCcccccchhhhhHHHHHHHHHHhcCcccccccccccccccCCCCCCcccchhhhhhhhHHHHHHhhhhccC
Q 000056 1391 SAAMVSDSDTPEIIWTHKMRAENLIRQVLQHLGDFPQKLSQHCHSLYEYAPMPPVTYPELKDEMWCHRYYLRNLCDEIQF 1470 (2526)
Q Consensus 1391 a~~l~g~~dtPevIWn~~MR~~~Li~~i~~hl~df~~rL~~~~~alY~~~p~p~i~Y~eL~~El~C~~yYLr~lcd~~rf 1470 (2526)
.+.|++|.++||+|||+.+|. +|++.+.. +|-.+.+..-|+-.-...|.|..+++|++.|..|+|.++|+
T Consensus 1612 Lk~LNsN~E~Py~IWNn~TRa-ELLeFve~------Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirVYNeq--- 1681 (2235)
T KOG1789|consen 1612 LKTLNSNMENPYMIWNNGTRA-ELLEFVER------QRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRVYNEQ--- 1681 (2235)
T ss_pred HHHhhcCCCCceeeecCccHH-HHHHHHHH------HHhccCCCCCchhhccceeeehhhccceeeeeEEEEeecCC---
Confidence 999999999999999999999 99999998 55556666667777777899999999999999999999999
Q ss_pred CCCChhhhHHHHHHHHHHHHHHhhcCCCCCChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHH
Q 000056 1471 PNWPIVEHVEFLQSLLVMWREELTRRPMDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYR 1550 (2526)
Q Consensus 1471 P~wpi~dP~~fL~sll~~wr~el~~~~~~~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYR 1550 (2526)
|++.+.+|..|..++++......+. .+|-..+ ++.+.+.|.-+..
T Consensus 1682 Ptf~l~ePk~Fa~~LlDyI~S~~~~------------l~~~~~~-----------------------~~~s~d~ie~~~~ 1726 (2235)
T KOG1789|consen 1682 PTFALHEPKKFAIDLLDYIKSHSAE------------LTGAPKP-----------------------KAISDDLIEIDWG 1726 (2235)
T ss_pred CchhhcCcHHHHHHHHHHHHHhHHH------------hcCCCCc-----------------------cccccchhhhhcc
Confidence 9999999999999999988764322 1221111 1112222222211
Q ss_pred HHHHHHCCCCCCchHHHHHHHHHHHHHhhccccCCCCCChhhHHhhhhhhcccccccCCccCCCccCccccccccccccC
Q 000056 1551 KLAMKYHPDKNPEGREKFLAVQKAYERLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDVLEPFKYAGYPMLLNAVTVDE 1630 (2526)
Q Consensus 1551 kLa~k~HPDKnp~a~ekF~~I~~AYEvLsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l~py~y~Gy~~Ll~~i~~~~ 1630 (2526)
-+-.-|-|+.|..+ .++-+.+.|.+ .++..+
T Consensus 1727 -V~sE~HgD~lPs~~----~v~m~LtAL~N--------------------------------------------li~~nP 1757 (2235)
T KOG1789|consen 1727 -VGSEAHGDSLPTET----KVLMTLTALAN--------------------------------------------LVSANP 1757 (2235)
T ss_pred -cchhhhcCCCChHH----HHHHHHHHHHH--------------------------------------------HHhhCc
Confidence 22356888877533 44555555544 223334
Q ss_pred CCCCCcccCchhHHHHHHHHHhhhcccCCCchhhHHHhcCHHHHHHHHHHhhhcccCCCCCCCccceeehhhhhhhhhhc
Q 000056 1631 DDNNFLSSDRAPLLVAASELLWLTCASSSLNGEELVRDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLS 1710 (2526)
Q Consensus 1631 dd~~ffs~~~~~ll~~A~El~~~Tv~~S~lNaeeL~re~G~~~L~~~lsrC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a 1710 (2526)
|-.+.|+++. +|+... .||.+
T Consensus 1758 dlasvfgSe~---------------------------------------~lig~F------------------~l~~~-- 1778 (2235)
T KOG1789|consen 1758 DLASVFGSEI---------------------------------------LLIGNF------------------PLLIT-- 1778 (2235)
T ss_pred chhhhccchh---------------------------------------hhhccc------------------HHHHH--
Confidence 4456666432 332211 01111
Q ss_pred cChHHHHHHHhhcchHHHHHHhhccccchhHHHHHHHHHHHhhCCHHHHHHHHHhccHHHHHHHhhcCCCcccccCcccc
Q 000056 1711 QFESARTEVLQFSGLVQDIVHCTELELVPGAVDAALQTIAHVSVSSELQDALLKAGALWFLLPLLLQYDSTAEKSDTNES 1790 (2526)
Q Consensus 1711 ~F~~cr~~i~~~~~l~~di~~~l~l~~~~~l~~aALe~v~~~a~~~elq~~i~~~GVLw~LL~lLf~YD~Tlees~le~~ 1790 (2526)
.+.-+..|+++..||++|+.++++.+|++.|+.+|+|-.||.+|.+-. +.-+..++++
T Consensus 1779 ---------------------~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~P-S~R~~vL~vL 1836 (2235)
T KOG1789|consen 1779 ---------------------YLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQP-SMRARVLDVL 1836 (2235)
T ss_pred ---------------------HHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcCh-HHHHHHHHHH
Confidence 122256778999999999999999999999999999988888887522 2335778899
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHh-----------------hCcCCCCCCCCccHHHHHHHHHhchHHHHHHhhccChH
Q 000056 1791 HGVGASVQIAKNMHAVRAAQALSRL-----------------SGLCSNGISIPYNEAAASALRALLTPKLASLLKDQIPK 1853 (2526)
Q Consensus 1791 ~~~~~~~qivkn~lAk~a~~aL~~L-----------------~g~~~d~~~~P~n~~v~~~L~klLpP~l~~~L~d~~p~ 1853 (2526)
++++++.|+.|++++++++.++..+ +|+..|++.||+ |+++|-||||..|++.|+|+ |+
T Consensus 1837 YAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPr---V~ITL~kFLP~~f~d~~RD~-PE 1912 (2235)
T KOG1789|consen 1837 YALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPR---VTITLIKFLPEIFADSLRDS-PE 1912 (2235)
T ss_pred HHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCc---eeeehHHhchHHHHHHHhcC-HH
Confidence 9999999999999999998888743 478899999997 59999999999999999997 89
Q ss_pred HHHHHhhccCCCcccccchhhHHHHHHHHHHH------HhccCCCCCcccccccccccccccCCcEEeeEEEeeeccCCC
Q 000056 1854 NLLSKLNTNLESPEIIWNSSTRAELLKFVDQQ------RASQSPDGSYDLKDSNGFLYEALSKELYVGNVYLRVYNDQPD 1927 (2526)
Q Consensus 1854 ~~L~~LnSn~EnPeLIWnn~tRaEL~e~Le~q------~~~~~~~~~w~l~~~~~f~Y~~l~~ELvVGGVYLRlyneqP~ 1927 (2526)
+++++|+++|||||||||+.||+.++..+.++ .|+++|+.+|+.|+.+.. ++...+|+.|||||+|.|+.+|+
T Consensus 1913 AaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg-~~Ea~~E~aVGG~~~R~Fi~~P~ 1991 (2235)
T KOG1789|consen 1913 AAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAG-TSEADKECAVGGSINREFVVGPG 1991 (2235)
T ss_pred HHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcc-hhhhccCcccchhhhHHHhhCCC
Confidence 99999999999999999999999999888775 367799999999997766 78999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcccCCCCcccccccccccchhhhhccccCCCCCCccccCCCCcccCccccccccccch
Q 000056 1928 FEITEPEAFCVALIDFISYLVHNQSATKSDVQGEESLDGLSSKIVQDKLSLDPSSSKTFELPSDATDSSMNERKVNDESL 2007 (2526)
Q Consensus 1928 ~~Lr~Pk~Fl~~LLdfl~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~s~ 2007 (2526)
|+||+||+|+.+|||.+.+++++.++.
T Consensus 1992 f~LR~Pk~FL~~LLek~lelm~~~~pe----------------------------------------------------- 2018 (2235)
T KOG1789|consen 1992 FNLRHPKLFLTELLEKVLELMSRPTPE----------------------------------------------------- 2018 (2235)
T ss_pred CcccCHHHHHHHHHHHHHHHhcCCCcc-----------------------------------------------------
Confidence 999999999999999999998764421
Q ss_pred hcccccccCcchHHHHHHHHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhH
Q 000056 2008 AVSDRKVTGKEDSVMIKNLQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASC 2087 (2526)
Q Consensus 2008 ~~s~~~~~~~~d~e~l~~l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~C 2087 (2526)
.+. +...+.|+++|++.+|++++|+++.|+++|++..+..+ ++.++++|++|||.|+.|+-|
T Consensus 2019 ------------qh~---l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~---n~s~P~SaiRVlH~Lsen~~C 2080 (2235)
T KOG1789|consen 2019 ------------QHE---LDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQ---NTSAPRSAIRVLHELSENQFC 2080 (2235)
T ss_pred ------------cch---hHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhc---CCcCcHHHHHHHHHHhhccHH
Confidence 012 23346799999999999999999999999999999886 467899999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHhhCcchHHHHHHHHHHhh--cchHHHHHHHHcCCHhhhHHhhcCCCC---CCcHHHHHHHHH
Q 000056 2088 LEAMVADGSSLLLLLQMLHYAPACREGVLHVLYALA--STPELAWAAAKHGGVVYILELLLPSQQ---ETPLQQRAAAAS 2162 (2526)
Q Consensus 2088 VeaiA~~~~vl~~Ll~lL~~~p~~~~~vL~~L~aL~--s~t~lVkqal~~GgvlyLL~LL~~s~e---~~~~~~R~~aA~ 2162 (2526)
+++||+.+ ++..++..|...++..++++++|.+++ ..+++|+|++++|.|.|||.+|+.+.- ....+.|+++++
T Consensus 2081 ~~AMA~l~-~i~~~m~~mkK~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~tL~~~~~~aas~A~Iv~ 2159 (2235)
T KOG1789|consen 2081 CDAMAQLP-CIDGIMKSMKKQPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSSTLNGVSNGAAARAEIVD 2159 (2235)
T ss_pred HHHHhccc-cchhhHHHHHhcchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccccccccCchhHHHHHHHH
Confidence 99999977 556789999999999999999998888 477999999999999999999988631 346789999999
Q ss_pred HHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCch
Q 000056 2163 LLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPG 2198 (2526)
Q Consensus 2163 lL~kM~aDklhGPrV~~~L~KfLP~~fvdamrdsP~ 2198 (2526)
+|+.|..+..+|.||+++|++ ...++|.+|+.-
T Consensus 2160 aLk~~~~~l~vg~kV~EILd~---S~VWSAfKDQKH 2192 (2235)
T KOG1789|consen 2160 ALKSAILDLKVGQKVAEILDK---SPVWSAFKDQKH 2192 (2235)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---hhHHHHhhhccc
Confidence 999999999999999999999 999999999864
No 3
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=9.1e-16 Score=187.51 Aligned_cols=69 Identities=41% Similarity=0.699 Sum_probs=63.1
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC---chHHHHHHHHHHHHHh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERL 1578 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEvL 1578 (2526)
..++|+||||+ ++|+++||||||||||+|||||+|| +|+|||++|++|||||
T Consensus 3 ~~dyYeiLGV~-------------------------k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVL 57 (371)
T COG0484 3 KRDYYEILGVS-------------------------KDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVL 57 (371)
T ss_pred ccchhhhcCCC-------------------------CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 35789999999 5899999999999999999999998 4899999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhhcccccccCCccC
Q 000056 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDVLE 1612 (2526)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l~ 1612 (2526)
|||+ ||..||+||+...
T Consensus 58 sD~e-----------------KRa~YD~fG~~~~ 74 (371)
T COG0484 58 SDPE-----------------KRAAYDQFGHAGF 74 (371)
T ss_pred CCHH-----------------HHHHhhccCcccc
Confidence 9976 7899999998654
No 4
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.1e-15 Score=185.85 Aligned_cols=112 Identities=28% Similarity=0.436 Sum_probs=92.1
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHH
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYER 1577 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEv 1577 (2526)
...+|++|||. +++++.+||++|||||++|||||||+ +.++|+.|+.||||
T Consensus 7 ~~c~YE~L~v~-------------------------~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeV 61 (508)
T KOG0717|consen 7 KRCYYEVLGVE-------------------------RDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEV 61 (508)
T ss_pred hhHHHHHhccc-------------------------ccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 35689999999 58899999999999999999999984 78899999999999
Q ss_pred hhccccCCCCCChhhHHhhhhhhcccccccCCccCCC----ccCccccccccccccCCCCCCcccCchhHHHHHHH
Q 000056 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDVLEPF----KYAGYPMLLNAVTVDEDDNNFLSSDRAPLLVAASE 1649 (2526)
Q Consensus 1578 Lsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l~py----~y~Gy~~Ll~~i~~~~dd~~ffs~~~~~ll~~A~E 1649 (2526)
||||++|.||+. |.+.||+.+-..|.---.++++| +|.||+ .+..|||.+|..+|...|.+
T Consensus 62 LSdp~eR~wyd~--hreqil~~~~s~~~~~~~dlf~ff~~~~y~gy~---------~~~~gfy~vy~dvf~~~~~~ 126 (508)
T KOG0717|consen 62 LSDPQERAWYDS--HREQILRGKNSDTGVQIEDLFQFFTSSCYIGYE---------NTSAGFYRVYQDVFNALASD 126 (508)
T ss_pred hcChHhhhhHHH--HHHHHhcCCCCccccchHHHHHHhhhhhhcccc---------cccchhHHHHHHHHHHHhhh
Confidence 999999999998 46677777644222222334444 899994 77899999999999877765
No 5
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.7e-14 Score=170.45 Aligned_cols=71 Identities=37% Similarity=0.664 Sum_probs=63.2
Q ss_pred ChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHH
Q 000056 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYER 1577 (2526)
Q Consensus 1501 s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEv 1577 (2526)
+..+.|++|||+ ++|++++||+||||||+||||||||+ |.++|+.|+.||||
T Consensus 14 ~~rDfYelLgV~-------------------------k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEV 68 (336)
T KOG0713|consen 14 AGRDFYELLGVP-------------------------KNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEV 68 (336)
T ss_pred cCCCHHHHhCCC-------------------------CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 456899999999 58999999999999999999999975 89999999999999
Q ss_pred hhccccCCCCCChhhHHhhhhhhcccccccCCccCC
Q 000056 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDVLEP 1613 (2526)
Q Consensus 1578 Lsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l~p 1613 (2526)
||||. +|..||+||+..-.
T Consensus 69 LsDpe-----------------kRk~YD~~GEegL~ 87 (336)
T KOG0713|consen 69 LSDPE-----------------KRKHYDTYGEEGLK 87 (336)
T ss_pred hcCHH-----------------HHHHHHhhhHhhhc
Confidence 99975 67789999976443
No 6
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.6e-13 Score=166.09 Aligned_cols=66 Identities=44% Similarity=0.755 Sum_probs=60.9
Q ss_pred HHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhhcccc
Q 000056 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQATMQ 1583 (2526)
Q Consensus 1504 ~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLsd~~~ 1583 (2526)
..|.||||++ +|+++||||||||||++|||||||++.|||++|++|||+||||+
T Consensus 5 ~~y~il~v~~-------------------------~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~e- 58 (337)
T KOG0712|consen 5 KLYDILGVSP-------------------------DASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPE- 58 (337)
T ss_pred ccceeeccCC-------------------------CcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 4689999995 78999999999999999999999999999999999999999976
Q ss_pred CCCCCChhhHHhhhhhhcccccccCCcc
Q 000056 1584 GLQGPQPWRLLLLLKGQCILYRRYGDVL 1611 (2526)
Q Consensus 1584 r~~~p~~~~~~liLr~qr~~Ydr~g~~l 1611 (2526)
+|.+||+||+..
T Consensus 59 ----------------kr~~yD~~g~~~ 70 (337)
T KOG0712|consen 59 ----------------KREIYDQYGEEG 70 (337)
T ss_pred ----------------HHHHHHhhhhhh
Confidence 789999999753
No 7
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=1.8e-12 Score=162.51 Aligned_cols=68 Identities=26% Similarity=0.561 Sum_probs=60.9
Q ss_pred ChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHh
Q 000056 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERL 1578 (2526)
Q Consensus 1501 s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvL 1578 (2526)
+..++|++|||+ ++|++++|||||||||++||||||+ +++++|++|++|||+|
T Consensus 2 ~~~dyY~~Lgv~-------------------------~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevL 56 (372)
T PRK14296 2 KKKDYYEVLGVS-------------------------KTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVL 56 (372)
T ss_pred CCCCHHHhcCCC-------------------------CCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHh
Confidence 345899999999 4789999999999999999999996 4889999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+|++ +|..||+||+.
T Consensus 57 sD~~-----------------KR~~YD~~G~~ 71 (372)
T PRK14296 57 LDKD-----------------KRKQYDQFGHA 71 (372)
T ss_pred cCHH-----------------Hhhhhhhccch
Confidence 9975 78889999874
No 8
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=1.9e-12 Score=162.36 Aligned_cols=66 Identities=42% Similarity=0.740 Sum_probs=60.2
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC---chHHHHHHHHHHHHHhh
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEvLs 1579 (2526)
.++|+||||+ ++||+++|||||||||++||||||+ +++++|++|++|||+|+
T Consensus 3 ~dyY~vLgv~-------------------------~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLs 57 (369)
T PRK14288 3 LSYYEILEVE-------------------------KHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLS 57 (369)
T ss_pred CChHHHcCCC-------------------------CCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhc
Confidence 4789999999 4889999999999999999999997 37899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|++ +|..||+||+.
T Consensus 58 d~~-----------------kR~~YD~~G~~ 71 (369)
T PRK14288 58 DEK-----------------KRALYDRYGKK 71 (369)
T ss_pred cHH-----------------HHHHHHHhccc
Confidence 965 78899999975
No 9
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.26 E-value=4.1e-12 Score=161.01 Aligned_cols=69 Identities=35% Similarity=0.665 Sum_probs=61.7
Q ss_pred CCChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHh
Q 000056 1499 DLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERL 1578 (2526)
Q Consensus 1499 ~~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvL 1578 (2526)
.+...++|++|||+ ++|+.++|||||||||++||||||++ .++|++|++|||+|
T Consensus 24 ~~~~~d~Y~vLGV~-------------------------~~As~~eIKkAYrkla~k~HPDk~~~-~e~F~~i~~AYevL 77 (421)
T PTZ00037 24 EVDNEKLYEVLNLS-------------------------KDCTTSEIKKAYRKLAIKHHPDKGGD-PEKFKEISRAYEVL 77 (421)
T ss_pred cccchhHHHHcCCC-------------------------CCCCHHHHHHHHHHHHHHHCCCCCch-HHHHHHHHHHHHHh
Confidence 34567999999999 48899999999999999999999985 68999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+|+. +|..||+||+.
T Consensus 78 sD~~-----------------kR~~YD~~G~~ 92 (421)
T PTZ00037 78 SDPE-----------------KRKIYDEYGEE 92 (421)
T ss_pred ccHH-----------------HHHHHhhhcch
Confidence 9975 78889998864
No 10
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=7.5e-12 Score=157.15 Aligned_cols=68 Identities=43% Similarity=0.705 Sum_probs=60.9
Q ss_pred ChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC---chHHHHHHHHHHHHH
Q 000056 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYER 1577 (2526)
Q Consensus 1501 s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEv 1577 (2526)
+..++|++|||+ ++|+.++||+|||+||++||||||+ +++++|++|++|||+
T Consensus 2 ~~~d~y~~Lgv~-------------------------~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~v 56 (372)
T PRK14286 2 SERSYYDILGVS-------------------------KSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEI 56 (372)
T ss_pred CCCCHHHhcCCC-------------------------CCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHH
Confidence 346899999999 4889999999999999999999986 378999999999999
Q ss_pred hhccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1578 Lsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|+|+. +|..||+||+.
T Consensus 57 L~d~~-----------------kR~~YD~~G~~ 72 (372)
T PRK14286 57 LRDPK-----------------KRQAYDQFGKA 72 (372)
T ss_pred hccHH-----------------HHHHHHHhCch
Confidence 99965 78889999975
No 11
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=1.1e-11 Score=155.63 Aligned_cols=67 Identities=33% Similarity=0.650 Sum_probs=60.5
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2526)
..++|++|||+ ++|+.++|||||||||++||||+|+ +++++|++|++|||+|+
T Consensus 3 ~~d~y~~Lgv~-------------------------~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~ 57 (371)
T PRK14287 3 KRDYYEVLGVD-------------------------RNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLS 57 (371)
T ss_pred CCCHHHhcCCC-------------------------CCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhC
Confidence 35799999999 4889999999999999999999995 47899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|++ +|..||+||+.
T Consensus 58 d~~-----------------kR~~YD~~G~~ 71 (371)
T PRK14287 58 DPQ-----------------KKAHYDQFGHT 71 (371)
T ss_pred cHh-----------------HHHHHHhhCCc
Confidence 975 78899999975
No 12
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=1.1e-11 Score=156.41 Aligned_cols=66 Identities=35% Similarity=0.519 Sum_probs=59.6
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC---chHHHHHHHHHHHHHh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERL 1578 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEvL 1578 (2526)
..++|++|||+ ++|++++|||||||||++||||||+ ++.++|++|++|||+|
T Consensus 8 ~~Dyy~~Lgv~-------------------------~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL 62 (392)
T PRK14279 8 EKDFYKELGVS-------------------------SDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVL 62 (392)
T ss_pred ccCHHHhcCCC-------------------------CCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHh
Confidence 35899999999 4789999999999999999999997 3789999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhhcccccccCC
Q 000056 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGD 1609 (2526)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~ 1609 (2526)
+|++ +|..||+||+
T Consensus 63 sD~~-----------------KR~~YD~~G~ 76 (392)
T PRK14279 63 SDPA-----------------KRKEYDETRR 76 (392)
T ss_pred cchh-----------------hhhHHHHhhh
Confidence 9976 7888999985
No 13
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=2e-11 Score=153.70 Aligned_cols=67 Identities=37% Similarity=0.645 Sum_probs=60.6
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2526)
..++|++|||+ ++|+.++||+||||||++||||+|+ +++++|+.|++|||+|+
T Consensus 3 ~~d~y~~Lgv~-------------------------~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~ 57 (380)
T PRK14276 3 NTEYYDRLGVS-------------------------KDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLS 57 (380)
T ss_pred CCCHHHhhCCC-------------------------CCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhc
Confidence 35899999999 4789999999999999999999996 47899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|+. +|..||+||+.
T Consensus 58 d~~-----------------kR~~YD~~G~~ 71 (380)
T PRK14276 58 DPQ-----------------KRAAYDQYGAA 71 (380)
T ss_pred CHh-----------------hhhhHhhcCCc
Confidence 975 78899999975
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=2.2e-11 Score=153.03 Aligned_cols=67 Identities=37% Similarity=0.743 Sum_probs=59.9
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHH
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYER 1577 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEv 1577 (2526)
..++|++|||+ ++|+.++||+|||+||++||||+|++ ++++|++|++|||+
T Consensus 3 ~~d~y~~lgv~-------------------------~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~v 57 (369)
T PRK14282 3 KKDYYEILGVS-------------------------RNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEV 57 (369)
T ss_pred CCChHHhcCCC-------------------------CCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHH
Confidence 45799999999 48899999999999999999999873 67899999999999
Q ss_pred hhccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1578 Lsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|+|+. +|..||+||..
T Consensus 58 L~d~~-----------------kR~~YD~~g~~ 73 (369)
T PRK14282 58 LSDPQ-----------------KRAMYDRFGYV 73 (369)
T ss_pred hcChh-----------------hHHHHhhcCcc
Confidence 99965 78889999864
No 15
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=99.14 E-value=2.3e-11 Score=108.79 Aligned_cols=45 Identities=40% Similarity=0.809 Sum_probs=43.0
Q ss_pred eeEeecCCCcccccccHHHHHHHHhcCCcCcCCceecccCcchhhc
Q 000056 1173 EWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKL 1218 (2526)
Q Consensus 1173 eWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~W~~l 1218 (2526)
||||.. ||++.||||.++|++++++|.|+++|+||++||++|+|+
T Consensus 1 ~Wy~~~-~g~~~GP~s~~el~~l~~~g~i~~~tlvw~~g~~~W~pl 45 (45)
T PF14237_consen 1 EWYYAR-NGQQQGPFSLEELRQLISSGEIDPDTLVWKEGMSDWKPL 45 (45)
T ss_pred CEEEeC-CCeEECCcCHHHHHHHHHcCCCCCCCeEeCCChhhceEC
Confidence 699985 999999999999999999999999999999999999986
No 16
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=2.8e-11 Score=152.39 Aligned_cols=67 Identities=33% Similarity=0.618 Sum_probs=60.3
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2526)
..++|++|||+ ++|+.++||||||+||++||||||+ +++++|++|++|||+|+
T Consensus 4 ~~d~y~~Lgv~-------------------------~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Ls 58 (378)
T PRK14283 4 KRDYYEVLGVD-------------------------RNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLS 58 (378)
T ss_pred cCChHHhhCCC-------------------------CCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhc
Confidence 45899999999 4889999999999999999999996 58899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|+. +|..||+||+.
T Consensus 59 d~~-----------------kR~~YD~~G~~ 72 (378)
T PRK14283 59 DDE-----------------KRQRYDQFGHA 72 (378)
T ss_pred hhH-----------------HHHHHhhhccc
Confidence 965 68889999864
No 17
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=3.1e-11 Score=151.88 Aligned_cols=67 Identities=33% Similarity=0.637 Sum_probs=60.5
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2526)
..++|++|||+ ++|+.++||+||||||++||||+|+ +++++|++|++|||+|+
T Consensus 3 ~~~~y~iLgv~-------------------------~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~ 57 (376)
T PRK14280 3 KRDYYEVLGVS-------------------------KSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLS 57 (376)
T ss_pred CCChHHhhCCC-------------------------CCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhc
Confidence 35899999999 4789999999999999999999986 47899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|+. +|..||+||+.
T Consensus 58 d~~-----------------kr~~yD~~G~~ 71 (376)
T PRK14280 58 DDQ-----------------KRAQYDQFGHA 71 (376)
T ss_pred cHh-----------------HHHHHHhcCcc
Confidence 965 78899999975
No 18
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=3.1e-11 Score=147.20 Aligned_cols=67 Identities=33% Similarity=0.609 Sum_probs=60.5
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2526)
..++|++|||+ ++|+.++|||||||||++||||+|+ +++++|+.|++|||+|+
T Consensus 3 ~~d~y~vLgv~-------------------------~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~ 57 (291)
T PRK14299 3 YKDYYAILGVP-------------------------KNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLS 57 (291)
T ss_pred CCCHHHHcCCC-------------------------CCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhc
Confidence 46899999999 4789999999999999999999996 47899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|++ +|..||+||+.
T Consensus 58 d~~-----------------kr~~yD~~g~~ 71 (291)
T PRK14299 58 DPE-----------------KRRIYDTYGTT 71 (291)
T ss_pred CHH-----------------HHHHHHhcCCc
Confidence 965 78899999975
No 19
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=3.2e-11 Score=151.69 Aligned_cols=66 Identities=41% Similarity=0.715 Sum_probs=59.8
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhhc
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQA 1580 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLsd 1580 (2526)
.++|++|||+ ++|+.++|||||||||++||||+|+ +++++|++|++|||+|+|
T Consensus 5 ~d~y~iLgv~-------------------------~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d 59 (377)
T PRK14298 5 RDYYEILGLS-------------------------KDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSD 59 (377)
T ss_pred CCHHHhhCCC-------------------------CCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcc
Confidence 5899999999 4789999999999999999999996 478999999999999999
Q ss_pred cccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+. +|..||+||+.
T Consensus 60 ~~-----------------kR~~YD~~G~~ 72 (377)
T PRK14298 60 AE-----------------KRAQYDRFGHA 72 (377)
T ss_pred hH-----------------hhhhhhhcCcc
Confidence 75 78889999865
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=3.7e-11 Score=150.84 Aligned_cols=68 Identities=40% Similarity=0.708 Sum_probs=60.9
Q ss_pred ChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHH
Q 000056 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYER 1577 (2526)
Q Consensus 1501 s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEv 1577 (2526)
...++|++|||+ ++|+.++||+||||||++||||+|++ ++++|++|++|||+
T Consensus 2 ~~~d~y~~lgv~-------------------------~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~v 56 (366)
T PRK14294 2 VKRDYYEILGVT-------------------------RDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEV 56 (366)
T ss_pred CCCChHHHhCCC-------------------------CCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHH
Confidence 346899999999 47899999999999999999999973 78999999999999
Q ss_pred hhccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1578 Lsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|+|+. +|..||+||+.
T Consensus 57 L~d~~-----------------~r~~yD~~G~~ 72 (366)
T PRK14294 57 LSDPK-----------------KRGIYDQYGHE 72 (366)
T ss_pred hccHH-----------------HHHHHHhhccc
Confidence 99965 78899999975
No 21
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=4.1e-11 Score=151.04 Aligned_cols=66 Identities=33% Similarity=0.692 Sum_probs=59.6
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC---chHHHHHHHHHHHHHhh
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEvLs 1579 (2526)
.++|++|||+ ++|++++||+|||+||++||||+|+ +++++|++|++|||+|+
T Consensus 4 ~d~y~~Lgv~-------------------------~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~ 58 (380)
T PRK14297 4 KDYYEVLGLE-------------------------KGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLS 58 (380)
T ss_pred CChHHhhCCC-------------------------CCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 5799999999 4789999999999999999999997 37899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|+. +|..||+||+.
T Consensus 59 d~~-----------------~r~~yD~~G~~ 72 (380)
T PRK14297 59 DPQ-----------------KKAQYDQFGTA 72 (380)
T ss_pred CHh-----------------hhCchhhcCcc
Confidence 975 68889999864
No 22
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=4.3e-11 Score=150.05 Aligned_cols=66 Identities=35% Similarity=0.631 Sum_probs=59.5
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHhh
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvLs 1579 (2526)
.++|++|||+ ++|+.++||+|||+||++||||||++ ++++|++|++|||+|+
T Consensus 3 ~d~y~iLgv~-------------------------~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~ 57 (365)
T PRK14285 3 RDYYEILGLS-------------------------KGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLI 57 (365)
T ss_pred CCHHHhcCCC-------------------------CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 4789999999 47899999999999999999999973 7789999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|+. +|..||+||+.
T Consensus 58 d~~-----------------kr~~yd~~g~~ 71 (365)
T PRK14285 58 DDN-----------------KRAQYDRFGHT 71 (365)
T ss_pred Ccc-----------------hhHHHHhcCcc
Confidence 975 68889999875
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=4.3e-11 Score=150.40 Aligned_cols=67 Identities=36% Similarity=0.749 Sum_probs=60.1
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERL 1578 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvL 1578 (2526)
..++|++|||+ ++|+.++||+|||+||++||||||++ ++++|++|++|||+|
T Consensus 3 ~~~~y~~Lgv~-------------------------~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL 57 (373)
T PRK14301 3 QRDYYEVLGVS-------------------------RDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVL 57 (373)
T ss_pred CCChHHhcCCC-------------------------CCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHh
Confidence 46899999999 47899999999999999999999973 678999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+|+. +|..||+||+.
T Consensus 58 ~d~~-----------------kr~~yD~~g~~ 72 (373)
T PRK14301 58 RDAE-----------------KRARYDRFGHA 72 (373)
T ss_pred cchh-----------------hhhhhhhcccc
Confidence 9975 78889999875
No 24
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=4.6e-11 Score=150.82 Aligned_cols=66 Identities=38% Similarity=0.693 Sum_probs=59.5
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHhh
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvLs 1579 (2526)
.++|++|||++ +|++++||+||||||++||||||++ ++++|++|++|||+|+
T Consensus 5 ~d~y~~Lgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~ 59 (386)
T PRK14277 5 KDYYEILGVDR-------------------------NATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILS 59 (386)
T ss_pred CCHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhC
Confidence 58999999994 7899999999999999999999973 6889999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|+. +|..||+||+.
T Consensus 60 d~~-----------------kr~~yD~~G~~ 73 (386)
T PRK14277 60 DPQ-----------------KRAQYDQFGHA 73 (386)
T ss_pred CHH-----------------HHHHHHhhccc
Confidence 965 68889999864
No 25
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=4.6e-11 Score=150.41 Aligned_cols=66 Identities=36% Similarity=0.566 Sum_probs=59.6
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhhc
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQA 1580 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~--a~ekF~~I~~AYEvLsd 1580 (2526)
.++|+||||+ ++|+.++||+|||+||++||||+|++ ++++|++|++|||+|+|
T Consensus 3 ~d~y~iLgv~-------------------------~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d 57 (378)
T PRK14278 3 RDYYGLLGVS-------------------------RNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSD 57 (378)
T ss_pred CCcceecCCC-------------------------CCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhch
Confidence 4689999999 47899999999999999999999976 77899999999999999
Q ss_pred cccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+. +|..||+||+.
T Consensus 58 ~~-----------------~r~~YD~~G~~ 70 (378)
T PRK14278 58 PE-----------------KRRIVDLGGDP 70 (378)
T ss_pred hh-----------------hhhhhhccCCc
Confidence 75 67889999875
No 26
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=7e-11 Score=137.79 Aligned_cols=67 Identities=33% Similarity=0.680 Sum_probs=60.1
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERL 1578 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvL 1578 (2526)
..+.|.+||+. ++++.++|||+||+|+++|||||+|+ +.+||+.||+||++|
T Consensus 30 ~~~LYdVLgl~-------------------------k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~IL 84 (279)
T KOG0716|consen 30 RLDLYDVLGLP-------------------------KTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAIL 84 (279)
T ss_pred hhHHHHHhCCC-------------------------cccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHh
Confidence 45789999999 47899999999999999999999865 889999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+|+. ||..||+||+.
T Consensus 85 sD~~-----------------kR~~YD~~g~~ 99 (279)
T KOG0716|consen 85 SDPT-----------------KRNVYDEYGEL 99 (279)
T ss_pred cChh-----------------hhhhHHHhhhH
Confidence 9964 78899999864
No 27
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=7.8e-11 Score=149.00 Aligned_cols=65 Identities=43% Similarity=0.729 Sum_probs=59.1
Q ss_pred HHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHhhc
Q 000056 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQA 1580 (2526)
Q Consensus 1504 ~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvLsd 1580 (2526)
++|+||||+ ++|+.++||||||+||++||||+|++ ++++|++|++|||+|+|
T Consensus 2 d~y~iLgv~-------------------------~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d 56 (391)
T PRK14284 2 DYYTILGVS-------------------------KTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSD 56 (391)
T ss_pred CHHHhcCCC-------------------------CCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcC
Confidence 589999999 47899999999999999999999974 78899999999999999
Q ss_pred cccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
++ +|..||+||+.
T Consensus 57 ~~-----------------kR~~YD~~G~~ 69 (391)
T PRK14284 57 AQ-----------------KRESYDRYGKD 69 (391)
T ss_pred HH-----------------HHHHHHhcccc
Confidence 65 78899999975
No 28
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=8.9e-11 Score=148.10 Aligned_cols=66 Identities=39% Similarity=0.697 Sum_probs=59.6
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhhc
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQA 1580 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLsd 1580 (2526)
.++|++|||+ ++|+.++||+|||+||++||||||+ +++++|++|++|||+|+|
T Consensus 3 ~d~Y~~Lgv~-------------------------~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd 57 (382)
T PRK14291 3 KDYYEILGVS-------------------------RNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSD 57 (382)
T ss_pred CCHHHhhCCC-------------------------CCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcC
Confidence 4789999999 4789999999999999999999996 478999999999999999
Q ss_pred cccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+. +|..||+||+.
T Consensus 58 ~~-----------------kR~~YD~~g~~ 70 (382)
T PRK14291 58 PE-----------------KRKLYDQFGHA 70 (382)
T ss_pred HH-----------------HHHHHhhhccc
Confidence 75 67889999875
No 29
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=9.3e-11 Score=147.55 Aligned_cols=67 Identities=42% Similarity=0.772 Sum_probs=59.7
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERL 1578 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvL 1578 (2526)
..++|++|||++ +|+.++||+||||||++||||||++ ++++|++|++|||+|
T Consensus 3 ~~d~y~iLgv~~-------------------------~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L 57 (371)
T PRK10767 3 KRDYYEVLGVSR-------------------------NASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVL 57 (371)
T ss_pred CCChHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHh
Confidence 458999999994 7899999999999999999999963 678999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+|+. +|..||+||+.
T Consensus 58 ~d~~-----------------~r~~yd~~g~~ 72 (371)
T PRK10767 58 SDPQ-----------------KRAAYDQYGHA 72 (371)
T ss_pred cchh-----------------hhhHhhhcccc
Confidence 9965 67889999864
No 30
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.2e-10 Score=142.45 Aligned_cols=70 Identities=34% Similarity=0.652 Sum_probs=62.4
Q ss_pred CChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC------chHHHHHHHHH
Q 000056 1500 LSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP------EGREKFLAVQK 1573 (2526)
Q Consensus 1500 ~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp------~a~ekF~~I~~ 1573 (2526)
..+.|.|.+|+++ ++|+.++||+||||+++.|||||.. .|+++|+.|++
T Consensus 6 ~~e~e~Ya~LNlp-------------------------kdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~ 60 (546)
T KOG0718|consen 6 LDEIELYALLNLP-------------------------KDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQR 60 (546)
T ss_pred cchhhHHHHhCCC-------------------------cccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHH
Confidence 3456899999999 4889999999999999999999974 28899999999
Q ss_pred HHHHhhccccCCCCCChhhHHhhhhhhcccccccCCcc
Q 000056 1574 AYERLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDVL 1611 (2526)
Q Consensus 1574 AYEvLsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l 1611 (2526)
|||||+||+ ||..||.||+.+
T Consensus 61 AyEVLsDp~-----------------kRaIYD~~G~qG 81 (546)
T KOG0718|consen 61 AYEVLSDPQ-----------------KRAIYDNYGEQG 81 (546)
T ss_pred HHHHhcChH-----------------HHHHHHHhhhcc
Confidence 999999976 899999999853
No 31
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.06 E-value=1.3e-10 Score=147.38 Aligned_cols=66 Identities=39% Similarity=0.744 Sum_probs=59.1
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHhh
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvLs 1579 (2526)
.++|++|||+ ++|+.++|||||||||++||||||++ ++++|++|++|||+|+
T Consensus 3 ~d~y~iLgv~-------------------------~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~ 57 (397)
T PRK14281 3 RDYYEVLGVS-------------------------RSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLS 57 (397)
T ss_pred CChhhhcCCC-------------------------CCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhh
Confidence 4789999999 47899999999999999999999973 6799999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|+. +|..||+||+.
T Consensus 58 d~~-----------------~r~~yD~~g~~ 71 (397)
T PRK14281 58 NDD-----------------KRRRYDQFGHA 71 (397)
T ss_pred hhh-----------------hhhhhhhccch
Confidence 975 67889999864
No 32
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=1.4e-10 Score=146.51 Aligned_cols=66 Identities=32% Similarity=0.630 Sum_probs=58.8
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC---chHHHHHHHHHHHHHhh
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEvLs 1579 (2526)
.++|++|||+ ++|++++|||||||||++||||||+ +++++|++|++|||+|+
T Consensus 9 ~d~y~~Lgv~-------------------------~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~ 63 (389)
T PRK14295 9 KDYYKVLGVP-------------------------KDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLS 63 (389)
T ss_pred cCHHHhcCCC-------------------------CCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHC
Confidence 5899999999 4789999999999999999999996 37899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhhcccccc----cCCc
Q 000056 1580 ATMQGLQGPQPWRLLLLLKGQCILYRR----YGDV 1610 (2526)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr----~g~~ 1610 (2526)
|+. +|..||+ ||+.
T Consensus 64 d~~-----------------~r~~yD~~~~~~G~~ 81 (389)
T PRK14295 64 DEK-----------------KRKEYDEARSLFGNG 81 (389)
T ss_pred chh-----------------hHHHHHHHHhhhccc
Confidence 975 5777888 8764
No 33
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.00 E-value=2.9e-10 Score=143.79 Aligned_cols=67 Identities=34% Similarity=0.658 Sum_probs=60.1
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC---chHHHHHHHHHHHHHh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERL 1578 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEvL 1578 (2526)
..++|++|||+ ++|+.+|||+|||+||++||||+|+ +++++|++|++|||+|
T Consensus 4 ~~~~y~~Lgv~-------------------------~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L 58 (386)
T PRK14289 4 KRDYYEVLGVS-------------------------KTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVL 58 (386)
T ss_pred cCCHHHHcCCC-------------------------CCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHh
Confidence 46899999999 4789999999999999999999996 4789999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+|++ +|..||+||+.
T Consensus 59 ~d~~-----------------~R~~yD~~G~~ 73 (386)
T PRK14289 59 SDPD-----------------KRSRYDQFGHA 73 (386)
T ss_pred cCHH-----------------HHHHHHHhccc
Confidence 9964 67889999874
No 34
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.99 E-value=3.8e-10 Score=141.78 Aligned_cols=66 Identities=36% Similarity=0.620 Sum_probs=59.1
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHHh
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERL 1578 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEvL 1578 (2526)
.++|++|||++ +|+.++||+|||+||++||||+|++ ++++|++|++||++|
T Consensus 3 ~d~y~vLgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L 57 (365)
T PRK14290 3 KDYYKILGVDR-------------------------NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVL 57 (365)
T ss_pred CChhhhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHh
Confidence 47899999994 7899999999999999999999973 679999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+|+. +|..||+||+.
T Consensus 58 ~d~~-----------------~r~~yd~~G~~ 72 (365)
T PRK14290 58 SDPQ-----------------KRRQYDQTGTV 72 (365)
T ss_pred cChh-----------------hhhhhcccCCc
Confidence 9965 67889999874
No 35
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.98 E-value=3.8e-10 Score=138.68 Aligned_cols=66 Identities=27% Similarity=0.437 Sum_probs=59.0
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2526)
..++|++|||++ +++.++||+|||+||++||||+|+ ++.++|+.|++|||+|+
T Consensus 3 ~~d~y~~Lgv~~-------------------------~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~ 57 (306)
T PRK10266 3 LKDYYAIMGVKP-------------------------TDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLS 57 (306)
T ss_pred cCChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhh
Confidence 358999999994 789999999999999999999985 48899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhhcccccccCC
Q 000056 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGD 1609 (2526)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~ 1609 (2526)
|+. +|..||+||.
T Consensus 58 ~~~-----------------kr~~yD~~g~ 70 (306)
T PRK10266 58 DEQ-----------------RRAEYDQLWQ 70 (306)
T ss_pred hHH-----------------HHHHHHHhhc
Confidence 965 6788999874
No 36
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.97 E-value=4.4e-10 Score=140.80 Aligned_cols=65 Identities=42% Similarity=0.715 Sum_probs=58.1
Q ss_pred HHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhhcc
Q 000056 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQAT 1581 (2526)
Q Consensus 1504 ~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLsd~ 1581 (2526)
++|++|||++ +|+.++||+|||+||++||||+|+ +++++|++|++||++|+|+
T Consensus 1 d~y~~Lgv~~-------------------------~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~ 55 (354)
T TIGR02349 1 DYYEILGVSK-------------------------DASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDP 55 (354)
T ss_pred ChHHhCCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhCh
Confidence 4799999994 789999999999999999999995 5789999999999999996
Q ss_pred ccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1582 MQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1582 ~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
. +|..||+||..
T Consensus 56 ~-----------------~R~~yd~~g~~ 67 (354)
T TIGR02349 56 E-----------------KRAQYDQFGHA 67 (354)
T ss_pred H-----------------HHHhhhhcccc
Confidence 4 67889998865
No 37
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.97 E-value=5.3e-10 Score=140.83 Aligned_cols=65 Identities=37% Similarity=0.679 Sum_probs=59.2
Q ss_pred HHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhhcc
Q 000056 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQAT 1581 (2526)
Q Consensus 1504 ~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~--a~ekF~~I~~AYEvLsd~ 1581 (2526)
++|++|||++ +|+.++||+||||||++||||+|++ +.++|+.|++||++|+|+
T Consensus 3 d~y~~Lgv~~-------------------------~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~ 57 (371)
T PRK14292 3 DYYELLGVSR-------------------------TASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDA 57 (371)
T ss_pred ChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcch
Confidence 6899999994 7899999999999999999999975 789999999999999997
Q ss_pred ccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1582 MQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1582 ~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
. +|..||+||+.
T Consensus 58 ~-----------------~r~~yd~~G~~ 69 (371)
T PRK14292 58 E-----------------KRAHYDRFGTA 69 (371)
T ss_pred h-----------------hhhhHhhcCCc
Confidence 5 68889999975
No 38
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.97 E-value=4.9e-10 Score=141.01 Aligned_cols=66 Identities=32% Similarity=0.591 Sum_probs=59.3
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhhc
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQA 1580 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLsd 1580 (2526)
.++|++|||++ +||.++||+|||+||++||||+|+ .++++|++|++|||+|+|
T Consensus 3 ~~~y~iLgv~~-------------------------~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d 57 (372)
T PRK14300 3 QDYYQILGVSK-------------------------TASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKD 57 (372)
T ss_pred CChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhh
Confidence 47899999994 789999999999999999999996 478899999999999999
Q ss_pred cccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+. +|..||+||+.
T Consensus 58 ~~-----------------~r~~yD~~G~~ 70 (372)
T PRK14300 58 EQ-----------------KRAAYDRFGHD 70 (372)
T ss_pred Hh-----------------HhhHHHhcccc
Confidence 65 68889999864
No 39
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.7e-10 Score=135.39 Aligned_cols=68 Identities=34% Similarity=0.568 Sum_probs=60.1
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERL 1578 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvL 1578 (2526)
..|+|.+|||+. ++++.+||||||+.|++|||||||+ +.++|+.+.+||+||
T Consensus 4 ~~dyY~lLgi~~-------------------------~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL 58 (296)
T KOG0691|consen 4 DTDYYDLLGISE-------------------------DATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVL 58 (296)
T ss_pred cchHHHHhCCCC-------------------------CCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHh
Confidence 568999999994 7899999999999999999999975 899999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhhcccccccCCcc
Q 000056 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDVL 1611 (2526)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l 1611 (2526)
+|+. .|..||.+|...
T Consensus 59 ~D~~-----------------~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 59 SDEE-----------------SRAAYDKLRKSG 74 (296)
T ss_pred cCHH-----------------HHHHHHHHhhhc
Confidence 9975 566688887653
No 40
>PHA03102 Small T antigen; Reviewed
Probab=98.95 E-value=9.7e-10 Score=121.63 Aligned_cols=67 Identities=15% Similarity=0.362 Sum_probs=57.6
Q ss_pred ChHHHHHHhcccccCCCCCCccccccchhccccccccCCC--CHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHh
Q 000056 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENI--DEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERL 1578 (2526)
Q Consensus 1501 s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a--~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvL 1578 (2526)
+.+++|++|||++ ++ |..+||+|||++++++||||+++ .++|++|++||++|
T Consensus 3 e~~~l~~vLGl~~-------------------------~A~~s~~eIKkAYr~la~~~HPDkgg~-~e~~k~in~Ay~~L 56 (153)
T PHA03102 3 ESKELMDLLGLPR-------------------------SAWGNLPLMRKAYLRKCLEFHPDKGGD-EEKMKELNTLYKKF 56 (153)
T ss_pred hHHHHHHHcCCCC-------------------------CCCCCHHHHHHHHHHHHHHHCcCCCch-hHHHHHHHHHHHHH
Confidence 3578999999994 67 99999999999999999999864 78999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+|+. ++..|+.+|..
T Consensus 57 ~d~~-----------------~r~~yd~~g~~ 71 (153)
T PHA03102 57 RESV-----------------KSLRDLDGEED 71 (153)
T ss_pred hhHH-----------------HhccccccCCc
Confidence 9975 45667777754
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.95 E-value=6.4e-10 Score=146.23 Aligned_cols=68 Identities=28% Similarity=0.434 Sum_probs=60.8
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~--a~ekF~~I~~AYEvLs 1579 (2526)
..+.|++|||++ +|+..+|||||||||++|||||||+ +.++|+.|++||++|+
T Consensus 572 d~dYYdILGVs~-------------------------dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLS 626 (1136)
T PTZ00341 572 DTLFYDILGVGV-------------------------NADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILG 626 (1136)
T ss_pred CCChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhC
Confidence 467999999994 8899999999999999999999974 6789999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhhcccccccCCcc
Q 000056 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDVL 1611 (2526)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l 1611 (2526)
|+. +|..||+||...
T Consensus 627 Dp~-----------------kRk~YD~~G~~G 641 (1136)
T PTZ00341 627 DID-----------------KKKMYNKFGYDG 641 (1136)
T ss_pred CHH-----------------HHHHHhhccccc
Confidence 975 678899998754
No 42
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=7.3e-10 Score=126.39 Aligned_cols=66 Identities=32% Similarity=0.642 Sum_probs=59.1
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC-----chHHHHHHHHHHHHH
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP-----EGREKFLAVQKAYER 1577 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp-----~a~ekF~~I~~AYEv 1577 (2526)
.+.|++|||. +++++.+||||||||+++||||+++ +++++|+.+++||++
T Consensus 14 ~d~YevLGVe-------------------------r~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~i 68 (264)
T KOG0719|consen 14 KDLYEVLGVE-------------------------RDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQI 68 (264)
T ss_pred cCHHHHhhhc-------------------------ccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 4789999999 5899999999999999999999996 388999999999999
Q ss_pred hhccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1578 Lsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|+|.+ +|..||..|..
T Consensus 69 LsDee-----------------kR~~YDetG~i 84 (264)
T KOG0719|consen 69 LSDEE-----------------KRAVYDETGSI 84 (264)
T ss_pred hhHHH-----------------HHHHHhccCCC
Confidence 99965 67788888754
No 43
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=6.3e-10 Score=135.18 Aligned_cols=67 Identities=39% Similarity=0.575 Sum_probs=59.4
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2526)
.+++|+|||++ ++++..|||+||++||++||||.|. ++.++|++|.+|||+|+
T Consensus 42 ~~d~Y~vLgv~-------------------------~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLs 96 (288)
T KOG0715|consen 42 KEDYYKVLGVS-------------------------RNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILS 96 (288)
T ss_pred CcchhhhhCcC-------------------------CCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhc
Confidence 33899999999 4889999999999999999999996 48899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|++ ++..||++|..
T Consensus 97 d~e-----------------KR~~YD~~~~~ 110 (288)
T KOG0715|consen 97 DEE-----------------KRQEYDVYGLE 110 (288)
T ss_pred CHH-----------------HHHHHHHhhhh
Confidence 975 67778887765
No 44
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=9.3e-10 Score=138.69 Aligned_cols=66 Identities=38% Similarity=0.713 Sum_probs=59.3
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhhc
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQA 1580 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~--a~ekF~~I~~AYEvLsd 1580 (2526)
.++|+||||+ ++++.++||+|||+|+++||||+|++ ++++|+.|++||++|+|
T Consensus 3 ~d~y~vLgv~-------------------------~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~ 57 (374)
T PRK14293 3 ADYYEILGVS-------------------------RDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSD 57 (374)
T ss_pred CChhhhcCCC-------------------------CCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 4689999999 47899999999999999999999964 78999999999999999
Q ss_pred cccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+. +|..||+||+.
T Consensus 58 ~~-----------------~R~~yd~~g~~ 70 (374)
T PRK14293 58 PE-----------------TRARYDQFGEA 70 (374)
T ss_pred hH-----------------HHHHHhhcccc
Confidence 65 68889999864
No 45
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=98.88 E-value=3.1e-09 Score=97.96 Aligned_cols=52 Identities=46% Similarity=0.843 Sum_probs=47.7
Q ss_pred HHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHhhc
Q 000056 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQA 1580 (2526)
Q Consensus 1504 ~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvLsd 1580 (2526)
++|++||++. +++.++||++||+|+++||||++++ +.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~-------------------------~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPP-------------------------DASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 4799999994 6799999999999999999999985 78899999999999986
No 46
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=98.86 E-value=3.9e-09 Score=99.11 Aligned_cols=54 Identities=43% Similarity=0.744 Sum_probs=49.2
Q ss_pred HHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHHhh
Q 000056 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1504 ~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEvLs 1579 (2526)
++|++|||++ +++.++||++||++++++|||++++ +.+.|..|++||++|+
T Consensus 2 ~~y~vLgl~~-------------------------~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~ 56 (60)
T smart00271 2 DYYEILGVPR-------------------------DASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLS 56 (60)
T ss_pred CHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHc
Confidence 5899999994 6799999999999999999999984 7889999999999999
Q ss_pred ccc
Q 000056 1580 ATM 1582 (2526)
Q Consensus 1580 d~~ 1582 (2526)
|+.
T Consensus 57 ~~~ 59 (60)
T smart00271 57 DPE 59 (60)
T ss_pred CCC
Confidence 863
No 47
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=98.86 E-value=3.1e-09 Score=101.31 Aligned_cols=54 Identities=37% Similarity=0.693 Sum_probs=48.9
Q ss_pred HHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHHhh
Q 000056 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1504 ~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEvLs 1579 (2526)
++|++|||++ +++.++||++|+++++++|||+++. +.+.|..|++||++|+
T Consensus 1 ~~y~iLgl~~-------------------------~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~ 55 (64)
T PF00226_consen 1 NPYEILGLPP-------------------------DASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILS 55 (64)
T ss_dssp HHHHHCTSTT-------------------------TSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHCCCCC-------------------------CCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhC
Confidence 5799999994 7899999999999999999999865 4589999999999999
Q ss_pred ccc
Q 000056 1580 ATM 1582 (2526)
Q Consensus 1580 d~~ 1582 (2526)
++.
T Consensus 56 ~~~ 58 (64)
T PF00226_consen 56 DPE 58 (64)
T ss_dssp SHH
T ss_pred CHH
Confidence 975
No 48
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.81 E-value=1.6e-08 Score=107.02 Aligned_cols=96 Identities=26% Similarity=0.303 Sum_probs=64.9
Q ss_pred HHHHHHhhhhccCCCCChhhh-HHHHHHHHHHHH-HHhhcCCCCCChHHHHHHhcccccCCCCCCccccccchhcccccc
Q 000056 1458 RYYLRNLCDEIQFPNWPIVEH-VEFLQSLLVMWR-EELTRRPMDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISK 1535 (2526)
Q Consensus 1458 ~yYLr~lcd~~rfP~wpi~dP-~~fL~sll~~wr-~el~~~~~~~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~ 1535 (2526)
.|.++-+-....+++-.+..| .+|..++-...- ..+..-...|+.++||+|||+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~---------------------- 75 (116)
T PTZ00100 18 RYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISP---------------------- 75 (116)
T ss_pred HHHHHHHHHHhhccCccccCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCC----------------------
Confidence 454555544444444333333 344333211110 11222244678899999999994
Q ss_pred ccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhh
Q 000056 1536 KIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1536 ~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLs 1579 (2526)
+++.++||++||+|+++||||++ +..+.|++|++|||+|.
T Consensus 76 ---~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 76 ---TASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL 115 (116)
T ss_pred ---CCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence 67899999999999999999996 45789999999999985
No 49
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=5.6e-09 Score=118.81 Aligned_cols=55 Identities=38% Similarity=0.683 Sum_probs=49.6
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC---chHHHHHHHHHHHHHhh
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEvLs 1579 (2526)
-|.|+|||+++ .++++|||||||+|++||||||+| +.++.|.+|++||+.|+
T Consensus 99 fDPyEILGl~p-------------------------gas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLT 153 (230)
T KOG0721|consen 99 FDPYEILGLDP-------------------------GASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALT 153 (230)
T ss_pred CCcHHhhCCCC-------------------------CCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhc
Confidence 36899999995 779999999999999999999985 36789999999999999
Q ss_pred ccc
Q 000056 1580 ATM 1582 (2526)
Q Consensus 1580 d~~ 1582 (2526)
|+.
T Consensus 154 D~~ 156 (230)
T KOG0721|consen 154 DKK 156 (230)
T ss_pred chh
Confidence 975
No 50
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.76 E-value=2.5e-08 Score=120.51 Aligned_cols=92 Identities=33% Similarity=0.490 Sum_probs=69.7
Q ss_pred HHHHHHhhhhccCCCCChhhhHHHHHHHHHHHHHHhh-----------cCCCCCChHHHHHHhcccccCCCCCCcccccc
Q 000056 1458 RYYLRNLCDEIQFPNWPIVEHVEFLQSLLVMWREELT-----------RRPMDLSEEEACKILEISLDDVSSDDSHKSYS 1526 (2526)
Q Consensus 1458 ~yYLr~lcd~~rfP~wpi~dP~~fL~sll~~wr~el~-----------~~~~~~s~~~ay~iLgv~~~~~~~~~~~~~~~ 1526 (2526)
..+|+..|+.+.++ +.+| ..+..++..+.. +.+..++.++||++||+++
T Consensus 151 ~~~L~~Ia~~Lgis------~~df-~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~------------- 210 (267)
T PRK09430 151 RQVLYVIAEELGFS------RFQF-DQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSE------------- 210 (267)
T ss_pred HHHHHHHHHHcCCC------HHHH-HHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCC-------------
Confidence 34788889888765 3444 455555543211 1122467899999999994
Q ss_pred chhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC----------chHHHHHHHHHHHHHhhcc
Q 000056 1527 SEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP----------EGREKFLAVQKAYERLQAT 1581 (2526)
Q Consensus 1527 ~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp----------~a~ekF~~I~~AYEvLsd~ 1581 (2526)
++|.++||++||+|+++|||||+. .+.++|++|++|||+|+..
T Consensus 211 ------------~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 211 ------------SDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred ------------CCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999962 2678999999999999973
No 51
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.66 E-value=2e-08 Score=130.29 Aligned_cols=66 Identities=32% Similarity=0.596 Sum_probs=58.1
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhhc
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQA 1580 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLsd 1580 (2526)
.++|++|||++ +++..+||+|||+|+++|||||++ ++.++|++|++||++|+|
T Consensus 2 ~DYYeVLGVs~-------------------------dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSD 56 (871)
T TIGR03835 2 RDYYEVLGIDR-------------------------DADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSN 56 (871)
T ss_pred CChhHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCC
Confidence 36899999994 789999999999999999999986 467899999999999999
Q ss_pred cccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+. +|..||+||..
T Consensus 57 P~-----------------KRa~YD~fG~a 69 (871)
T TIGR03835 57 PK-----------------KRANYDKYGHD 69 (871)
T ss_pred HH-----------------HHHHHhhhccc
Confidence 75 67788888764
No 52
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.63 E-value=0.00033 Score=101.75 Aligned_cols=316 Identities=17% Similarity=0.180 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcC-ChhHHHHHHhhcchHHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQM 2104 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaiA~~~~vl~~Ll~l 2104 (2526)
.+.+..+|.++...+.+....+...+.++.|.++|... +..+|..++..|..++. +..=...|+..+ .++.|..+
T Consensus 421 Q~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~---s~~iQ~~A~~~L~nLa~~ndenr~aIieaG-aIP~LV~L 496 (2102)
T PLN03200 421 QEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS---SEQQQEYAVALLAILTDEVDESKWAITAAG-GIPPLVQL 496 (2102)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHHH
Confidence 35567788888888888888888899999999999873 56899999999988875 443334566655 88999999
Q ss_pred HhhC-cchHHHHHHHHHHhhcchHHHHHHH-HcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 000056 2105 LHYA-PACREGVLHVLYALASTPELAWAAA-KHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLA 2182 (2526)
Q Consensus 2105 L~~~-p~~~~~vL~~L~aL~s~t~lVkqal-~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~ 2182 (2526)
|... +.....+.-+|..++.+++=.+..+ ..|++..|+++|.+. .+..|..++..|..+..+ |..-. +
T Consensus 497 L~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg----d~~~q~~Aa~AL~nLi~~---~d~~~--I- 566 (2102)
T PLN03200 497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG----GPKGQEIAAKTLTKLVRT---ADAAT--I- 566 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHhc---cchhH--H-
Confidence 9643 3455668888888887665445545 779999999999763 468889999999998653 21111 1
Q ss_pred hhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHH--HHHHHhcCCcccccCCcccccccccC
Q 000056 2183 RFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASD--LYREQMKGRVVDWDVPEQASAQQEMR 2260 (2526)
Q Consensus 2183 KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~--~~~~Q~~~~~~~W~lPe~f~~y~~l~ 2260 (2526)
+ . .+.+|.+.. ..+...+-..+..+..- ....+..+ ..
T Consensus 567 --------------~-~-Lv~LLlsdd--------~~~~~~aL~vLgnIlsl~~~~d~~~~g----------------~~ 606 (2102)
T PLN03200 567 --------------S-Q-LTALLLGDL--------PESKVHVLDVLGHVLSVASLEDLVREG----------------SA 606 (2102)
T ss_pred --------------H-H-HHHHhcCCC--------hhHHHHHHHHHHHHHhhcchhHHHHHh----------------hh
Confidence 1 1 335554432 33344444444333220 00001000 00
Q ss_pred CCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCC
Q 000056 2261 DEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGY 2340 (2526)
Q Consensus 2261 ~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~ 2340 (2526)
+ .+-++.+++++...+ .+.-+....++-.++..++...+.+...|.
T Consensus 607 ---------------~------------~ggL~~Lv~LL~sgs-------~~ikk~Aa~iLsnL~a~~~d~~~avv~aga 652 (2102)
T PLN03200 607 ---------------A------------NDALRTLIQLLSSSK-------EETQEKAASVLADIFSSRQDLCESLATDEI 652 (2102)
T ss_pred ---------------c------------cccHHHHHHHHcCCC-------HHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence 0 045677777776532 223355677888999999999999999999
Q ss_pred hHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhh--CChhHHHHHhhcCCCC
Q 000056 2341 VPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLA--ASTTCAEAMAATSTGT 2418 (2526)
Q Consensus 2341 lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls--~s~~Cv~ala~~~~~~ 2418 (2526)
+|-|+.+|.+.+. .+++.+-..|-.|+ .++.-...+.+-+|
T Consensus 653 IpPLV~LLss~~~-----------------------------------~v~keAA~AL~nL~~~~~~~q~~~~v~~Ga-- 695 (2102)
T PLN03200 653 INPCIKLLTNNTE-----------------------------------AVATQSARALAALSRSIKENRKVSYAAEDA-- 695 (2102)
T ss_pred HHHHHHHHhcCCh-----------------------------------HHHHHHHHHHHHHHhCCCHHHHHHHHHcCC--
Confidence 9999999986431 24445555555555 33344445566666
Q ss_pred CcchHHHHHHhhccCch-H-hHHHHHHHHHhcCCccchHHHHHHHhhCcHHHHHHhcc
Q 000056 2419 PQVVPILMKAIGWQGGS-I-LALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2419 ~~~v~~l~~a~~~~~~~-~-la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
||+|++.++..... . .|+++|..+++.+ +-...+.+.|.|+-|.++|.
T Consensus 696 ---V~pL~~LL~~~d~~v~e~Al~ALanLl~~~-----e~~~ei~~~~~I~~Lv~lLr 745 (2102)
T PLN03200 696 ---IKPLIKLAKSSSIEVAEQAVCALANLLSDP-----EVAAEALAEDIILPLTRVLR 745 (2102)
T ss_pred ---HHHHHHHHhCCChHHHHHHHHHHHHHHcCc-----hHHHHHHhcCcHHHHHHHHH
Confidence 99999999876433 3 9999999999953 24567778899999999993
No 53
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=7.6e-08 Score=110.57 Aligned_cols=56 Identities=43% Similarity=0.694 Sum_probs=51.0
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHH
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYER 1577 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEv 1577 (2526)
..+.|++|||.+ +++..+||++||++|++||||++++ ++++|+.|++||++
T Consensus 5 ~~~~y~iLgv~~-------------------------~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~v 59 (237)
T COG2214 5 LLDYYEILGVPP-------------------------NASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEI 59 (237)
T ss_pred hhhHHHHhCCCC-------------------------CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 457899999994 7899999999999999999999984 56999999999999
Q ss_pred hhccc
Q 000056 1578 LQATM 1582 (2526)
Q Consensus 1578 Lsd~~ 1582 (2526)
|+|+.
T Consensus 60 Lsd~~ 64 (237)
T COG2214 60 LSDPE 64 (237)
T ss_pred hhCHH
Confidence 99975
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4e-08 Score=113.02 Aligned_cols=56 Identities=29% Similarity=0.602 Sum_probs=50.6
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2526)
.+++|++|||+ +.++..+|+||||+||++||||+++ ++++.|..|..|||+|.
T Consensus 32 ~enCYdVLgV~-------------------------Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilk 86 (329)
T KOG0722|consen 32 AENCYDVLGVA-------------------------REANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILK 86 (329)
T ss_pred chhHHHHhhhh-------------------------hhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhccccccc
Confidence 57899999999 4678899999999999999999986 46778999999999999
Q ss_pred ccc
Q 000056 1580 ATM 1582 (2526)
Q Consensus 1580 d~~ 1582 (2526)
|..
T Consensus 87 d~e 89 (329)
T KOG0722|consen 87 DNE 89 (329)
T ss_pred chh
Confidence 965
No 55
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.50 E-value=1.1e-07 Score=113.71 Aligned_cols=61 Identities=31% Similarity=0.496 Sum_probs=53.8
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc------hHHHHHHHHHHHH
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE------GREKFLAVQKAYE 1576 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~------a~ekF~~I~~AYE 1576 (2526)
.++|+||||. |+|+..||.|||||+|.|||||-..+ +++||-.|..|-|
T Consensus 394 RDYYKILGVk-------------------------RnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKE 448 (504)
T KOG0624|consen 394 RDYYKILGVK-------------------------RNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKE 448 (504)
T ss_pred chHHHHhhhc-------------------------ccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHH
Confidence 5799999999 68999999999999999999998643 7789999999999
Q ss_pred HhhccccCCCCC
Q 000056 1577 RLQATMQGLQGP 1588 (2526)
Q Consensus 1577 vLsd~~~r~~~p 1588 (2526)
||+||+.|...+
T Consensus 449 VLsd~EkRrqFD 460 (504)
T KOG0624|consen 449 VLSDPEKRRQFD 460 (504)
T ss_pred hhcCHHHHhhcc
Confidence 999998765433
No 56
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.1e-07 Score=115.27 Aligned_cols=63 Identities=30% Similarity=0.411 Sum_probs=56.5
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2526)
.-+||.+||+.. ++|+++|||.|||+|+.-|||||. .|+|.|+.++.|||+|+
T Consensus 234 ~~daYsvlGl~~-------------------------d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig 288 (490)
T KOG0720|consen 234 ILDAYSALGLPS-------------------------DCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIG 288 (490)
T ss_pred CCCchhhcCCCC-------------------------CCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhc
Confidence 557999999994 789999999999999999999994 68999999999999999
Q ss_pred ccccCCCCCC
Q 000056 1580 ATMQGLQGPQ 1589 (2526)
Q Consensus 1580 d~~~r~~~p~ 1589 (2526)
|+..|..|+.
T Consensus 289 ~~~kR~eYd~ 298 (490)
T KOG0720|consen 289 DSVKRKEYDL 298 (490)
T ss_pred chhhhhHHHH
Confidence 9887776664
No 57
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.32 E-value=6e-07 Score=102.12 Aligned_cols=56 Identities=21% Similarity=0.473 Sum_probs=47.8
Q ss_pred HHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHHH
Q 000056 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKAY 1575 (2526)
Q Consensus 1504 ~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~--------a~ekF~~I~~AY 1575 (2526)
++|++||+++. -++|..+||++||+++++|||||... +.++|..||+||
T Consensus 2 ~yf~llgl~~~-----------------------~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY 58 (171)
T PRK05014 2 DYFTLFGLPAR-----------------------YDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAY 58 (171)
T ss_pred CHHHHCCCCCC-----------------------CCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 57999999852 15788999999999999999999642 346899999999
Q ss_pred HHhhccc
Q 000056 1576 ERLQATM 1582 (2526)
Q Consensus 1576 EvLsd~~ 1582 (2526)
++|+||.
T Consensus 59 ~~L~dp~ 65 (171)
T PRK05014 59 QTLKHPL 65 (171)
T ss_pred HHHCChh
Confidence 9999986
No 58
>PHA02624 large T antigen; Provisional
Probab=98.31 E-value=6.4e-07 Score=116.14 Aligned_cols=57 Identities=23% Similarity=0.481 Sum_probs=51.0
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCC--CHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENI--DEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a--~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLs 1579 (2526)
.+++|++||+++ ++ +..+||+||||+|++|||||++ ..++|++|++||++|+
T Consensus 10 ~~elyelLGL~~-------------------------~A~gs~~eIKkAYRkLAkkyHPDKgG-deekfk~Ln~AYevL~ 63 (647)
T PHA02624 10 SKELMDLLGLPM-------------------------AAWGNLPLMRKAYLRKCKEYHPDKGG-DEEKMKRLNSLYKKLQ 63 (647)
T ss_pred HHHHHHHcCCCC-------------------------CCCCCHHHHHHHHHHHHHHHCcCCCC-cHHHHHHHHHHHHHHh
Confidence 568999999994 77 8999999999999999999975 4789999999999999
Q ss_pred ccccC
Q 000056 1580 ATMQG 1584 (2526)
Q Consensus 1580 d~~~r 1584 (2526)
|+..+
T Consensus 64 d~~k~ 68 (647)
T PHA02624 64 EGVKS 68 (647)
T ss_pred cHHHh
Confidence 97644
No 59
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.29 E-value=0.006 Score=89.36 Aligned_cols=313 Identities=15% Similarity=0.200 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhc-CChhHHHHHHhhcchHHHHHHHH
Q 000056 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLT-TCASCLEAMVADGSSLLLLLQML 2105 (2526)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls-~n~~CVeaiA~~~~vl~~Ll~lL 2105 (2526)
+.+..||..++. ||.+...+-..+....|+++|... +..+|..+...|..++ .+.+..+.|...+ .+..|+.+|
T Consensus 381 e~V~eALasl~g-N~~l~~~L~~~daik~LV~LL~~~---~~evQ~~Av~aL~~L~~~~~e~~~aIi~~g-gIp~LV~LL 455 (2102)
T PLN03200 381 ERIIEALASLYG-NAYLSRKLNHAEAKKVLVGLITMA---TADVQEELIRALSSLCCGKGGLWEALGGRE-GVQLLISLL 455 (2102)
T ss_pred HHHHHHHHHhcC-ChHHHHHHHhccchhhhhhhhccC---CHHHHHHHHHHHHHHhCCCHHHHHHHHHcC-cHHHHHHHH
Confidence 445667655444 344444444445667788888764 4578888888887777 5588888898866 678899888
Q ss_pred hh-CcchHHHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHH-
Q 000056 2106 HY-APACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLA- 2182 (2526)
Q Consensus 2106 ~~-~p~~~~~vL~~L~aL~s-~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~- 2182 (2526)
.. .+.....++.+|..++. +++-.+..+.+||+.+|+++|... ...+|..||-.|.-+.. +.+.++..+.
T Consensus 456 ~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~----~~~iqeeAawAL~NLa~---~~~qir~iV~~ 528 (2102)
T PLN03200 456 GLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG----SQKAKEDSATVLWNLCC---HSEDIRACVES 528 (2102)
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhC---CcHHHHHHHHH
Confidence 75 34445567888888875 455666778999999999999753 57899999999999987 4667777664
Q ss_pred -hhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccCC
Q 000056 2183 -RFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRD 2261 (2526)
Q Consensus 2183 -KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~ 2261 (2526)
.-+|+ +++.|+++.. +.+......|.++... . +...
T Consensus 529 aGAIpp-LV~LL~sgd~--------------------~~q~~Aa~AL~nLi~~--------~-------d~~~------- 565 (2102)
T PLN03200 529 AGAVPA-LLWLLKNGGP--------------------KGQEIAAKTLTKLVRT--------A-------DAAT------- 565 (2102)
T ss_pred CCCHHH-HHHHHhCCCH--------------------HHHHHHHHHHHHHHhc--------c-------chhH-------
Confidence 35665 6666655432 2233433444333221 0 0000
Q ss_pred CcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhc---CchhhhhhccC
Q 000056 2262 EPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRV---HPALADHVGYL 2338 (2526)
Q Consensus 2262 El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~---qp~LaD~vp~l 2338 (2526)
+..+++++...+ ++...-+-.++-.++.. .-...+-+...
T Consensus 566 ------------------------------I~~Lv~LLlsdd-------~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ 608 (2102)
T PLN03200 566 ------------------------------ISQLTALLLGDL-------PESKVHVLDVLGHVLSVASLEDLVREGSAAN 608 (2102)
T ss_pred ------------------------------HHHHHHHhcCCC-------hhHHHHHHHHHHHHHhhcchhHHHHHhhhcc
Confidence 012222222211 11112122233223221 11111112345
Q ss_pred CChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhC-ChhHHHHHhhcCCC
Q 000056 2339 GYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTG 2417 (2526)
Q Consensus 2339 G~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~-s~~Cv~ala~~~~~ 2417 (2526)
|.+|+|.++|.+.+ +.+++.|..+|-.++. +.-..+++..-+.
T Consensus 609 ggL~~Lv~LL~sgs-----------------------------------~~ikk~Aa~iLsnL~a~~~d~~~avv~aga- 652 (2102)
T PLN03200 609 DALRTLIQLLSSSK-----------------------------------EETQEKAASVLADIFSSRQDLCESLATDEI- 652 (2102)
T ss_pred ccHHHHHHHHcCCC-----------------------------------HHHHHHHHHHHHHHhcCChHHHHHHHHcCC-
Confidence 99999999999754 2456677777766654 4444566666544
Q ss_pred CCcchHHHHHHhhccCchH--hHHHHHHHHHhcCCccchHHHHHHHhhCcHHHHHHhcc
Q 000056 2418 TPQVVPILMKAIGWQGGSI--LALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2418 ~~~~v~~l~~a~~~~~~~~--la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
|||+++-.......+ -|+-+|-.++..++ ..=....++.|.||.|.++|.
T Consensus 653 ----IpPLV~LLss~~~~v~keAA~AL~nL~~~~~---~~q~~~~v~~GaV~pL~~LL~ 704 (2102)
T PLN03200 653 ----INPCIKLLTNNTEAVATQSARALAALSRSIK---ENRKVSYAAEDAIKPLIKLAK 704 (2102)
T ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHHHHhCCC---HHHHHHHHHcCCHHHHHHHHh
Confidence 999999998766543 89999999997542 222223478899999999994
No 60
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.2e-06 Score=107.47 Aligned_cols=66 Identities=38% Similarity=0.547 Sum_probs=55.4
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC----chHHHHHHHHHHHHH
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP----EGREKFLAVQKAYER 1577 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp----~a~ekF~~I~~AYEv 1577 (2526)
..+.|+|||++ +++++.+|||||||+|+.||||||- +++.+|+.|-+||.+
T Consensus 372 Rkd~ykilGi~-------------------------~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~i 426 (486)
T KOG0550|consen 372 RKDWYKILGIS-------------------------RNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTI 426 (486)
T ss_pred hhhHHHHhhhh-------------------------hhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHH
Confidence 45688999988 5789999999999999999999985 367799999999999
Q ss_pred hhccccCCCCCChhh
Q 000056 1578 LQATMQGLQGPQPWR 1592 (2526)
Q Consensus 1578 Lsd~~~r~~~p~~~~ 1592 (2526)
|+|+.++..++...+
T Consensus 427 l~d~~kr~r~dsg~d 441 (486)
T KOG0550|consen 427 LSDPMKRVRFDSGQD 441 (486)
T ss_pred hcCHHHHhhcccccc
Confidence 999976655554433
No 61
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.25 E-value=7.8e-07 Score=100.71 Aligned_cols=56 Identities=30% Similarity=0.492 Sum_probs=47.2
Q ss_pred HHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHH------HHHHHHHHHHH
Q 000056 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGRE------KFLAVQKAYER 1577 (2526)
Q Consensus 1504 ~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~e------kF~~I~~AYEv 1577 (2526)
++|++||+++. -++|..+|+++||+|++++||||+....+ .+..||+||++
T Consensus 3 ~yf~llgl~~~-----------------------f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~ 59 (166)
T PRK01356 3 NYFQLLGLPQE-----------------------YNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYST 59 (166)
T ss_pred CHHHHcCCCCC-----------------------CCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57999999952 15789999999999999999999865333 46799999999
Q ss_pred hhccc
Q 000056 1578 LQATM 1582 (2526)
Q Consensus 1578 Lsd~~ 1582 (2526)
|+||.
T Consensus 60 L~dp~ 64 (166)
T PRK01356 60 LKDAL 64 (166)
T ss_pred hCCHH
Confidence 99975
No 62
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=7.3e-07 Score=107.44 Aligned_cols=66 Identities=44% Similarity=0.768 Sum_probs=56.3
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHHh
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERL 1578 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEvL 1578 (2526)
.++|++|+|.. .+++.+||+|||++|++||||||+. ++++|+++.+|||+|
T Consensus 3 ~d~~~~l~i~~-------------------------~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~l 57 (306)
T KOG0714|consen 3 KDYYKILGIAR-------------------------SASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVL 57 (306)
T ss_pred ccHHHHhCccc-------------------------cccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhcccccc
Confidence 46899999983 6677799999999999999999875 345799999999999
Q ss_pred hccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+|+. ++..||+||+.
T Consensus 58 s~~~-----------------kr~~~d~~~~~ 72 (306)
T KOG0714|consen 58 SDPK-----------------KRKIYDQYGEE 72 (306)
T ss_pred CCHH-----------------HhhhccccCcc
Confidence 9965 67888999873
No 63
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.17 E-value=1.8e-06 Score=98.61 Aligned_cols=57 Identities=19% Similarity=0.390 Sum_probs=47.5
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---h-----HHHHHHHHHH
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---G-----REKFLAVQKA 1574 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a-----~ekF~~I~~A 1574 (2526)
.++|++||+++. -++|..+||++||+|++++|||+++. . .+.+..||+|
T Consensus 6 ~dyf~llglp~~-----------------------f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~A 62 (176)
T PRK03578 6 DDHFSLFGLPAR-----------------------FALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEA 62 (176)
T ss_pred CCHHHHcCCCCC-----------------------CCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 478999999952 15789999999999999999999853 2 2346899999
Q ss_pred HHHhhccc
Q 000056 1575 YERLQATM 1582 (2526)
Q Consensus 1575 YEvLsd~~ 1582 (2526)
|++|+||.
T Consensus 63 Y~tL~~p~ 70 (176)
T PRK03578 63 YQTLRDPL 70 (176)
T ss_pred HHHhCChh
Confidence 99999985
No 64
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.15 E-value=1.1e-06 Score=107.66 Aligned_cols=55 Identities=38% Similarity=0.666 Sum_probs=49.1
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHH
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKA 1574 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~--------a~ekF~~I~~A 1574 (2526)
=|.|+||||+ +++++++|||+||+|++||||||.+. -+|++.+|++|
T Consensus 98 fDPyEILGI~-------------------------~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkA 152 (610)
T COG5407 98 FDPYEILGID-------------------------QDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKA 152 (610)
T ss_pred CChHHhhccc-------------------------CCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHH
Confidence 3689999999 47799999999999999999999763 57899999999
Q ss_pred HHHhhccc
Q 000056 1575 YERLQATM 1582 (2526)
Q Consensus 1575 YEvLsd~~ 1582 (2526)
|+.|+|..
T Consensus 153 Y~~lTd~k 160 (610)
T COG5407 153 YGLLTDKK 160 (610)
T ss_pred HHhhhhHH
Confidence 99999964
No 65
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.13 E-value=2e-06 Score=97.97 Aligned_cols=57 Identities=23% Similarity=0.435 Sum_probs=48.6
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHH
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKA 1574 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~--------a~ekF~~I~~A 1574 (2526)
.+.|++||+++. -+.|..+|+++||+|+++||||++.. +.++|..||+|
T Consensus 4 ~~~F~l~~l~~~-----------------------f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~A 60 (173)
T PRK00294 4 PCHFALFDLQPS-----------------------FRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEA 60 (173)
T ss_pred CChhhhcCcCCC-----------------------CCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 457899999852 26789999999999999999999853 34679999999
Q ss_pred HHHhhccc
Q 000056 1575 YERLQATM 1582 (2526)
Q Consensus 1575 YEvLsd~~ 1582 (2526)
|++|+||.
T Consensus 61 Y~~L~~p~ 68 (173)
T PRK00294 61 YQTLKSPP 68 (173)
T ss_pred HHHhCChh
Confidence 99999986
No 66
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=97.71 E-value=3.2e-05 Score=87.16 Aligned_cols=44 Identities=27% Similarity=0.568 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHHHHHhhccc
Q 000056 1539 NIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKAYERLQATM 1582 (2526)
Q Consensus 1539 ~a~e~~IKkAYRkLa~k~HPDKnp~--------a~ekF~~I~~AYEvLsd~~ 1582 (2526)
+.|..+|+++||+|+++||||+.+. +.++|..||+||++|+||.
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~ 53 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPL 53 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChh
Confidence 3577899999999999999999532 4578999999999999986
No 67
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=8.7e-05 Score=86.70 Aligned_cols=59 Identities=27% Similarity=0.275 Sum_probs=50.0
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCC-----CchHHHHHHHHHHHHH
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKN-----PEGREKFLAVQKAYER 1577 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKn-----p~a~ekF~~I~~AYEv 1577 (2526)
.+.|.+||++. ..-.+++..|.++.++...+|||||. .+.++.|+-||+|||+
T Consensus 43 ~DlYa~lgLsk----------------------yR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~ev 100 (379)
T COG5269 43 VDLYALLGLSK----------------------YRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREV 100 (379)
T ss_pred hhHHHHhchHh----------------------hhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHH
Confidence 56788888873 33467888999999999999999996 4578999999999999
Q ss_pred hhcccc
Q 000056 1578 LQATMQ 1583 (2526)
Q Consensus 1578 Lsd~~~ 1583 (2526)
|+|+..
T Consensus 101 L~D~~~ 106 (379)
T COG5269 101 LGDRKL 106 (379)
T ss_pred hccHHH
Confidence 999753
No 68
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.62 E-value=0.015 Score=79.21 Aligned_cols=382 Identities=18% Similarity=0.228 Sum_probs=217.0
Q ss_pred CCCchhhHHHhcCHHHHHHHHHHhhhcccCCCCCCCccceeehhhhhhhhhhccChHHHHHHHhhcchHHHHHHhhcccc
Q 000056 1658 SSLNGEELVRDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCTELEL 1737 (2526)
Q Consensus 1658 S~lNaeeL~re~G~~~L~~~lsrC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l~l~~ 1737 (2526)
-..+-..++..|++..|.++++|= ...+...+..++..+|-|.+++..|.+.. ++.-+++++.-++
T Consensus 279 d~~ve~kM~~~~iV~~Lv~~Ldr~-------------n~ellil~v~fLkkLSi~~ENK~~m~~~g-iV~kL~kLl~s~~ 344 (708)
T PF05804_consen 279 DPRVELKMVNKGIVSLLVKCLDRE-------------NEELLILAVTFLKKLSIFKENKDEMAESG-IVEKLLKLLPSEN 344 (708)
T ss_pred ChHHHHHHHhcCCHHHHHHHHcCC-------------CHHHHHHHHHHHHHHcCCHHHHHHHHHcC-CHHHHHHHhcCCC
Confidence 345666777788988888777632 12345678889999999999999998764 7777888887544
Q ss_pred chhHHHHHHHHHHHhhCCHHHHHHHHHhccHHHHHHHhhcCCCcccccCccccccccccHHHHHHHHHHHHHHHHHHhhC
Q 000056 1738 VPGAVDAALQTIAHVSVSSELQDALLKAGALWFLLPLLLQYDSTAEKSDTNESHGVGASVQIAKNMHAVRAAQALSRLSG 1817 (2526)
Q Consensus 1738 ~~~l~~aALe~v~~~a~~~elq~~i~~~GVLw~LL~lLf~YD~Tlees~le~~~~~~~~~qivkn~lAk~a~~aL~~L~g 1817 (2526)
..++..||..+.+++-|.+++.+|.+.|++..|..+|.+.+ . ... ++..|..|
T Consensus 345 -~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~--------------~~v--------al~iLy~L-- 397 (708)
T PF05804_consen 345 -EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--F--------------REV--------ALKILYNL-- 397 (708)
T ss_pred -HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--h--------------HHH--------HHHHHHHh--
Confidence 47899999999999999999999999999999999985311 1 111 11222222
Q ss_pred cCCCCCCCCccHHHHHHH--HHhchHHHHHHhhccCh-------HHHHHHhhccCCCcccccchhhHHHHHHHHHHHHhc
Q 000056 1818 LCSNGISIPYNEAAASAL--RALLTPKLASLLKDQIP-------KNLLSKLNTNLESPEIIWNSSTRAELLKFVDQQRAS 1888 (2526)
Q Consensus 1818 ~~~d~~~~P~n~~v~~~L--~klLpP~l~~~L~d~~p-------~~~L~~LnSn~EnPeLIWnn~tRaEL~e~Le~q~~~ 1888 (2526)
+.+. ..+..+ +..+ |.+++.|-..+. -.++.-+-.+.+|-++|=.++--..|++..-+.
T Consensus 398 -S~dd-------~~r~~f~~TdcI-p~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~--- 465 (708)
T PF05804_consen 398 -SMDD-------EARSMFAYTDCI-PQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKT--- 465 (708)
T ss_pred -ccCH-------hhHHHHhhcchH-HHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhc---
Confidence 1111 011111 0111 334444333211 123333455556655554333222222221110
Q ss_pred cCCCCCcccccccccccccccCCcEEeeEEEeeeccCCCCCCCChHHHHHHHHHHHHHHhhcccCCCCcccccccccccc
Q 000056 1889 QSPDGSYDLKDSNGFLYEALSKELYVGNVYLRVYNDQPDFEITEPEAFCVALIDFISYLVHNQSATKSDVQGEESLDGLS 1968 (2526)
Q Consensus 1889 ~~~~~~w~l~~~~~f~Y~~l~~ELvVGGVYLRlyneqP~~~Lr~Pk~Fl~~LLdfl~~~~~~~~~~~~d~~~~~~~~~l~ 1968 (2526)
+++ -... .||-.-.+++ + -+. ...+|+..++.-...
T Consensus 466 ~D~-------lLlK---------------lIRNiS~h~~-~---~k~---~f~~~i~~L~~~v~~--------------- 501 (708)
T PF05804_consen 466 RDP-------LLLK---------------LIRNISQHDG-P---LKE---LFVDFIGDLAKIVSS--------------- 501 (708)
T ss_pred ccH-------HHHH---------------HHHHHHhcCc-h---HHH---HHHHHHHHHHHHhhc---------------
Confidence 000 0000 0111111111 0 011 112233322211000
Q ss_pred hhhhhccccCCCCCCccccCCCCcccCccccccccccchhcccccccCcchHHHHHHHHHHHHHHHHHHhhCccchhhcc
Q 000056 1969 SKIVQDKLSLDPSSSKTFELPSDATDSSMNERKVNDESLAVSDRKVTGKEDSVMIKNLQFGLTSLQNILTSNPNLASIFS 2048 (2526)
Q Consensus 1969 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~s~~~s~~~~~~~~d~e~l~~l~maL~AL~nLL~~nP~la~~~~ 2048 (2526)
.++.+. +.-++-.|.|+--.+.+-+..+.
T Consensus 502 ------------------------------------------------~~~ee~---~vE~LGiLaNL~~~~ld~~~ll~ 530 (708)
T PF05804_consen 502 ------------------------------------------------GDSEEF---VVECLGILANLTIPDLDWAQLLQ 530 (708)
T ss_pred ------------------------------------------------CCcHHH---HHHHHHHHHhcccCCcCHHHHHH
Confidence 000111 23334445555444444444454
Q ss_pred ccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhhCcchHHHHHHHH---HHhhcc
Q 000056 2049 TKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHYAPACREGVLHVL---YALAST 2125 (2526)
Q Consensus 2049 s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~~p~~~~~vL~~L---~aL~s~ 2125 (2526)
.++-++-|...|... ...+.+..-+..++..++....|..-++.++ ++..|..+|....+--+.+++++ |.+..+
T Consensus 531 ~~~llp~L~~~L~~g-~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sg-li~~Li~LL~~kqeDdE~VlQil~~f~~ll~h 608 (708)
T PF05804_consen 531 EYNLLPWLKDLLKPG-ASEDDLLLEVVILLGTLASDPECAPLLAKSG-LIPTLIELLNAKQEDDEIVLQILYVFYQLLFH 608 (708)
T ss_pred hCCHHHHHHHHhCCC-CCChHHHHHHHHHHHHHHCCHHHHHHHHhCC-hHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC
Confidence 455455555566533 3345677777778888999999999888765 77888888887655455555555 666667
Q ss_pred hHHHHHHHH-cCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhc-CCCCChHHHHHHHhhCcHHHHHHH
Q 000056 2126 PELAWAAAK-HGGVVYILELLLPSQQETPLQQRAAAASLLGKLVG-QPMHGPRVAITLARFLPDGLVSVI 2193 (2526)
Q Consensus 2126 t~lVkqal~-~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~a-DklhGPrV~~~L~KfLP~~fvdam 2193 (2526)
++-....++ .+.+-||++++-+ .|+.+|..|-..|.-++. |+-+|.||+.-=-+.-=.-.++.+
T Consensus 609 ~~tr~~ll~~~~~~~ylidL~~d----~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v 674 (708)
T PF05804_consen 609 EETREVLLKETEIPAYLIDLMHD----KNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMV 674 (708)
T ss_pred hHHHHHHHhccchHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHH
Confidence 776666655 5677799999875 478999999888887775 666666665544443333444443
No 69
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00013 Score=82.49 Aligned_cols=55 Identities=36% Similarity=0.684 Sum_probs=48.8
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHHh
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERL 1578 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEvL 1578 (2526)
=++|++|.|.+ ..+.++||+.||+|+...||||||+ |...|..|.+||..|
T Consensus 53 LNpfeVLqIdp-------------------------ev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l 107 (250)
T KOG1150|consen 53 LNPFEVLQIDP-------------------------EVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLL 107 (250)
T ss_pred cChHHHHhcCC-------------------------CCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 36899999996 5588999999999999999999997 567899999999999
Q ss_pred hccc
Q 000056 1579 QATM 1582 (2526)
Q Consensus 1579 sd~~ 1582 (2526)
-|+.
T Consensus 108 ~n~~ 111 (250)
T KOG1150|consen 108 ENDK 111 (250)
T ss_pred hCHH
Confidence 9864
No 70
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.10 E-value=0.037 Score=75.41 Aligned_cols=340 Identities=17% Similarity=0.262 Sum_probs=198.9
Q ss_pred hCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhh-CcchHHHHHH
Q 000056 2039 SNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY-APACREGVLH 2117 (2526)
Q Consensus 2039 ~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~-~p~~~~~vL~ 2117 (2526)
.++.++..+...+.+..|..+|.. .+..+...++..|..||-..+|-..|++.+ ++..|.+++.+ +.+.+..+|.
T Consensus 278 ed~~ve~kM~~~~iV~~Lv~~Ldr---~n~ellil~v~fLkkLSi~~ENK~~m~~~g-iV~kL~kLl~s~~~~l~~~aLr 353 (708)
T PF05804_consen 278 EDPRVELKMVNKGIVSLLVKCLDR---ENEELLILAVTFLKKLSIFKENKDEMAESG-IVEKLLKLLPSENEDLVNVALR 353 (708)
T ss_pred cChHHHHHHHhcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHcC-CHHHHHHHhcCCCHHHHHHHHH
Confidence 467788888888999999999964 355688889999999999999999999866 88999999875 3567788999
Q ss_pred HHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCc
Q 000056 2118 VLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGP 2197 (2526)
Q Consensus 2118 ~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~KfLP~~fvdamrdsP 2197 (2526)
+|+.|..++++..+.++.|++..|..+|.+. ..|.-+..+|..++.|.- .|....=..-+|- +++.+-.+|
T Consensus 354 lL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~------~~~~val~iLy~LS~dd~--~r~~f~~TdcIp~-L~~~Ll~~~ 424 (708)
T PF05804_consen 354 LLFNLSFDPELRSQMVSLGLIPKLVELLKDP------NFREVALKILYNLSMDDE--ARSMFAYTDCIPQ-LMQMLLENS 424 (708)
T ss_pred HHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC------chHHHHHHHHHHhccCHh--hHHHHhhcchHHH-HHHHHHhCC
Confidence 9999999999999999999999999999753 345567788888877632 2221111122222 233333333
Q ss_pred hhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHH-----HHHHHHHhcCCcccccCCcccccccccCCCcEEeeeeehh
Q 000056 2198 GEAVVSALEQTTETPELVWTPAMAASLSAQISTMA-----SDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRL 2272 (2526)
Q Consensus 2198 ~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~-----~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRL 2272 (2526)
.+.+ .+|+||=--==+.-....+.++ ..+.+.. ..|+.|--+. .||.
T Consensus 425 ~~~v---------~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra-----~~~~D~lLlK--------------lIRN 476 (708)
T PF05804_consen 425 EEEV---------QLELIALLINLALNKRNAQLMCEGNGLQSLMKRA-----LKTRDPLLLK--------------LIRN 476 (708)
T ss_pred Cccc---------cHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHH-----HhcccHHHHH--------------HHHH
Confidence 2211 1233221000000000001111 1111111 2233222111 1222
Q ss_pred hccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHH--HHHHHHhcC-chhhhhhccCCChHHHHHHHH
Q 000056 2273 FLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSA--ALVSLLRVH-PALADHVGYLGYVPKLVAAVA 2349 (2526)
Q Consensus 2273 Fl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~--Alv~LL~~q-p~LaD~vp~lG~lpkl~~~l~ 2349 (2526)
-=.+++ +++. .|. +-+..++..+...+ +. +++.. ++.+=|... .+-..-+-..+-+|-|.+.|.
T Consensus 477 iS~h~~-~~k~--~f~-~~i~~L~~~v~~~~------~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~ 543 (708)
T PF05804_consen 477 ISQHDG-PLKE--LFV-DFIGDLAKIVSSGD------SE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLK 543 (708)
T ss_pred HHhcCc-hHHH--HHH-HHHHHHHHHhhcCC------cH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhC
Confidence 222222 1111 121 22222233333321 11 22221 222222221 122333334677788887775
Q ss_pred hhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHh
Q 000056 2350 YEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAI 2429 (2526)
Q Consensus 2350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~s~~Cv~ala~~~~~~~~~v~~l~~a~ 2429 (2526)
... ..+++.+.++.++-.+|....|+.-+++.++ ++.|...+
T Consensus 544 ~g~---------------------------------~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgl-----i~~Li~LL 585 (708)
T PF05804_consen 544 PGA---------------------------------SEDDLLLEVVILLGTLASDPECAPLLAKSGL-----IPTLIELL 585 (708)
T ss_pred CCC---------------------------------CChHHHHHHHHHHHHHHCCHHHHHHHHhCCh-----HHHHHHHH
Confidence 210 1135778999999999999999999999876 77777777
Q ss_pred hccC-ch--H-hHHHHHHHHHhcCCccchHHHHHHHhhCcHHHHHHhcc
Q 000056 2430 GWQG-GS--I-LALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2430 ~~~~-~~--~-la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
.... +- + -.+-++.+++.++ ..|+.++.+ .+.+.||+.++.
T Consensus 586 ~~kqeDdE~VlQil~~f~~ll~h~-~tr~~ll~~---~~~~~ylidL~~ 630 (708)
T PF05804_consen 586 NAKQEDDEIVLQILYVFYQLLFHE-ETREVLLKE---TEIPAYLIDLMH 630 (708)
T ss_pred HhhCchHHHHHHHHHHHHHHHcCh-HHHHHHHhc---cchHHHHHHHhc
Confidence 6633 32 2 3445667777764 345566654 689999999994
No 71
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=96.93 E-value=0.0008 Score=77.13 Aligned_cols=56 Identities=21% Similarity=0.388 Sum_probs=46.0
Q ss_pred HHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHHH
Q 000056 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKAY 1575 (2526)
Q Consensus 1504 ~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~--------a~ekF~~I~~AY 1575 (2526)
+++++||+++. =+.|...|++.||+|.+++||||... +.+.-..||+||
T Consensus 3 nyF~lf~lp~~-----------------------F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY 59 (173)
T PRK01773 3 NPFALFDLPVD-----------------------FQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDAL 59 (173)
T ss_pred ChHHhcCCCCC-----------------------CCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 57889999852 26799999999999999999999632 234567899999
Q ss_pred HHhhccc
Q 000056 1576 ERLQATM 1582 (2526)
Q Consensus 1576 EvLsd~~ 1582 (2526)
.+|+||.
T Consensus 60 ~tLkdPl 66 (173)
T PRK01773 60 QILKDPI 66 (173)
T ss_pred HHHCChH
Confidence 9999985
No 72
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.005 Score=64.30 Aligned_cols=58 Identities=26% Similarity=0.414 Sum_probs=49.2
Q ss_pred CCCChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHH
Q 000056 1498 MDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYER 1577 (2526)
Q Consensus 1498 ~~~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEv 1577 (2526)
+.|+..||..||||++ .++.++||.|.||.....|||+... .-.=.+||||+++
T Consensus 51 ~kMsr~EA~lIL~v~~-------------------------s~~k~KikeaHrriM~~NHPD~GGS-PYlAsKINEAKdl 104 (112)
T KOG0723|consen 51 PKMSRREAALILGVTP-------------------------SLDKDKIKEAHRRIMLANHPDRGGS-PYLASKINEAKDL 104 (112)
T ss_pred cccchHHHHHHhCCCc-------------------------cccHHHHHHHHHHHHHcCCCcCCCC-HHHHHHHHHHHHH
Confidence 4589999999999995 6789999999999999999999864 2333579999999
Q ss_pred hhcc
Q 000056 1578 LQAT 1581 (2526)
Q Consensus 1578 Lsd~ 1581 (2526)
|...
T Consensus 105 Le~~ 108 (112)
T KOG0723|consen 105 LEGT 108 (112)
T ss_pred Hhcc
Confidence 9863
No 73
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0093 Score=68.86 Aligned_cols=56 Identities=27% Similarity=0.551 Sum_probs=48.9
Q ss_pred ChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHH-H
Q 000056 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYE-R 1577 (2526)
Q Consensus 1501 s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~--a~ekF~~I~~AYE-v 1577 (2526)
..-++|++||+. ..+|..++|.+|.+|++++|||...+ ..+.|.+|.+||. |
T Consensus 45 ~~~e~fril~v~-------------------------e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkv 99 (342)
T KOG0568|consen 45 KIMECFRILGVE-------------------------EGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKV 99 (342)
T ss_pred HHHHHHHHhccc-------------------------ccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHH
Confidence 356899999998 37788999999999999999999864 5679999999999 8
Q ss_pred hhcc
Q 000056 1578 LQAT 1581 (2526)
Q Consensus 1578 Lsd~ 1581 (2526)
|+..
T Consensus 100 lq~~ 103 (342)
T KOG0568|consen 100 LQEK 103 (342)
T ss_pred HHHH
Confidence 8864
No 74
>PF02213 GYF: GYF domain; InterPro: IPR003169 The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif. It was identified in the human intracellular protein termed CD2 binding protein 2 (CD2BP2), which binds to a site containing two tandem PPPGHR segments within the cytoplasmic region of CD2. Binding experiments and mutational analyses have demonstrated the critical importance of the GYF tripeptide in ligand binding. A GYF domain is also found in several other eukaryotic proteins of unknown function []. It has been proposed that the GYF domain found in these proteins could also be involved in proline-rich sequence recognition []. Resolution of the structure of the CD2BP2 GYF domain by NMR spectroscopy revealed a compact domain with a beta-beta-alpha-beta-beta topology, where the single alpha-helix is tilted away from the twisted, anti-parallel beta-sheet. The conserved residues of the GYF domain create a contiguous patch of predominantly hydrophobic nature which forms an integral part of the ligand-binding site []. There is limited homology within the C-terminal 20-30 amino acids of various GYF domains, supporting the idea that this part of the domain is structurally but not functionally important [].; GO: 0005515 protein binding; PDB: 1SYX_F 1L2Z_A 1GYF_A 1WH2_A 3FMA_C 3K3V_A.
Probab=96.12 E-value=0.0045 Score=58.71 Aligned_cols=49 Identities=14% Similarity=0.343 Sum_probs=39.8
Q ss_pred ceeEeecCCCcccccccHHHHHHHHhcCCcCcCCceecccCcch-hhchh
Q 000056 1172 KEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDW-KKLRD 1220 (2526)
Q Consensus 1172 KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~W-~~l~~ 1220 (2526)
|.|+|.+.+|+.+|||+..+|+.-+++|-.+.+..|+..+-.+| .++..
T Consensus 1 ~~W~Y~d~~g~~qGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~~~~~~~ 50 (57)
T PF02213_consen 1 KMWYYKDPDGNIQGPFSSEQMQAWYKQGYFPDDLQVRRVDDTQFIDPFGS 50 (57)
T ss_dssp -EEEEESTTS-EEEEEEHHHHHHHHHTTSSTTT-EEEETTSTTT--SSCE
T ss_pred CEeEEECCCCCcCCCcCHHHHHHHHHCCCCCCCcEEEEecCCCCcccchh
Confidence 68999999999999999999999999999999999999866554 44443
No 75
>cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.
Probab=95.61 E-value=0.015 Score=55.35 Aligned_cols=50 Identities=16% Similarity=0.305 Sum_probs=45.3
Q ss_pred ceeEeecCCCcccccccHHHHHHHHhcCCcCcCCceeccc-Ccchhhchhh
Q 000056 1172 KEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASG-MLDWKKLRDI 1221 (2526)
Q Consensus 1172 KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~G-M~~W~~l~~i 1221 (2526)
..|+|.+.+|+.+|||+.++|+.-+++|-.+.+-.|+..| ...|.++.++
T Consensus 2 ~~W~Y~d~~g~vqGPF~~~~M~~W~~~gyF~~~l~vr~~~~~~~f~~l~~~ 52 (57)
T cd00072 2 VQWFYKDPQGEIQGPFSASQMLQWYQAGYFPDGLQVRRLDNGGEFYTLGDI 52 (57)
T ss_pred cEEEEECCCCCCcCCcCHHHHHHHHHCCCCCCCeEEEECCCCCCcEEHHHH
Confidence 5799999999999999999999999999999999999994 4569888775
No 76
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.65 E-value=2 Score=53.84 Aligned_cols=190 Identities=18% Similarity=0.213 Sum_probs=112.8
Q ss_pred HhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcC-ChhHHHHHHhhcchHHHHHHHHhhCcch-HHH
Q 000056 2037 LTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQMLHYAPAC-REG 2114 (2526)
Q Consensus 2037 L~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaiA~~~~vl~~Ll~lL~~~p~~-~~~ 2114 (2526)
|.-+|..+..+.-.|-|.+|...|... ++..+|..|..+|.-|+. +.--+..|-.. ..+..+..++...|-. +..
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~--dnEeiqchAvstLrnLAasse~n~~~i~es-gAi~kl~eL~lD~pvsvqse 395 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAG--DNEEIQCHAVSTLRNLAASSEHNVSVIRES-GAIPKLIELLLDGPVSVQSE 395 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcC--CchhhhhhHHHHHHHHhhhhhhhhHHHhhc-CchHHHHHHHhcCChhHHHH
Confidence 566999999999899999999999864 356699999999988886 55556666554 4788888888776632 222
Q ss_pred HHHHHHHhhcchHHHHHH-HHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHH-----------HHHHH
Q 000056 2115 VLHVLYALASTPELAWAA-AKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRV-----------AITLA 2182 (2526)
Q Consensus 2115 vL~~L~aL~s~t~lVkqa-l~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV-----------~~~L~ 2182 (2526)
+--++..|+ -.+--|++ +..|.+..|..+.. +.+.++|--+|+.|.-+.+|--|=.|| +-.|.
T Consensus 396 isac~a~La-l~d~~k~~lld~gi~~iLIp~t~----s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~ 470 (550)
T KOG4224|consen 396 ISACIAQLA-LNDNDKEALLDSGIIPILIPWTG----SESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLA 470 (550)
T ss_pred HHHHHHHHH-hccccHHHHhhcCCcceeecccC----ccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHH
Confidence 212222222 22223333 45554444444433 346778888999999999876665554 44455
Q ss_pred hhCcHHHHHHHhcCchhhHHHhhcccCcCc--ccccCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000056 2183 RFLPDGLVSVIRDGPGEAVVSALEQTTETP--ELVWTPAMAASLSAQISTMASDLYREQMKGR 2243 (2526)
Q Consensus 2183 KfLP~~fvdamrdsP~~a~v~~fds~~EnP--ELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~ 2243 (2526)
||+-..-. +++.-..-+++|+++. |.-| .+|=+ ++-|-++.++.++..+.++
T Consensus 471 Rfl~S~~~-tf~hia~wTI~qLle~-h~~~~~~~i~~-------~ddii~~~~~~~~r~~~~g 524 (550)
T KOG4224|consen 471 RFLASHEL-TFRHIARWTIQQLLED-HDLPLTAFIQS-------SDDIIELLNDIVARDANNG 524 (550)
T ss_pred HHHhhhHH-HHHHHHHHHHHHHHHh-CCccHHHHHhC-------chhHHHHHHHHHHHhccCC
Confidence 55544211 1222222334555443 2222 12221 1233367777777766555
No 77
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.56 E-value=21 Score=47.84 Aligned_cols=159 Identities=12% Similarity=0.162 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHH-HHhcCChhHHHHHHhhcchHHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVL-SLLTTCASCLEAMVADGSSLLLLLQM 2104 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL-~~ls~n~~CVeaiA~~~~vl~~Ll~l 2104 (2526)
++.+.-|+..|-...+.--..+.-.|-++.|..+|.+. ...++.-||+.+ +.+|.+..=-+.+...+ .++.|..+
T Consensus 254 l~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~---~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~-~L~~l~~l 329 (514)
T KOG0166|consen 254 LTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS---SPKVVTPALRAIGNIVTGSDEQTQVVINSG-ALPVLSNL 329 (514)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC---CcccccHHHhhccceeeccHHHHHHHHhcC-hHHHHHHH
Confidence 45667777665544444333355567888899999874 557788888888 77788887777777655 78888888
Q ss_pred HhhCc-chH-HHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHH
Q 000056 2105 LHYAP-ACR-EGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITL 2181 (2526)
Q Consensus 2105 L~~~p-~~~-~~vL~~L~aL~s-~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L 2181 (2526)
+...| +.+ ..+.=++..... +.+-++..+..|.+..|++++..+ ...+|-+||-+++-+++..- -..+....
T Consensus 330 l~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~----ef~~rKEAawaIsN~ts~g~-~~qi~yLv 404 (514)
T KOG0166|consen 330 LSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA----EFDIRKEAAWAISNLTSSGT-PEQIKYLV 404 (514)
T ss_pred hccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc----chHHHHHHHHHHHhhcccCC-HHHHHHHH
Confidence 87544 323 335555555554 667898999999999999999875 47889999999998887544 22344444
Q ss_pred HhhCcHHHHHHH
Q 000056 2182 ARFLPDGLVSVI 2193 (2526)
Q Consensus 2182 ~KfLP~~fvdam 2193 (2526)
..-.=+.|.+.+
T Consensus 405 ~~giI~plcdlL 416 (514)
T KOG0166|consen 405 EQGIIKPLCDLL 416 (514)
T ss_pred HcCCchhhhhcc
Confidence 443333344433
No 78
>smart00444 GYF Contains conserved Gly-Tyr-Phe residues. Proline-binding domain in CD2-binding protein. Contains conserved Gly-Tyr-Phe residues.
Probab=92.41 E-value=0.19 Score=47.98 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=44.0
Q ss_pred ceeEeecCCCcccccccHHHHHHHHhcCCcCcCCceecccCcchhhchhh
Q 000056 1172 KEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKLRDI 1221 (2526)
Q Consensus 1172 KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~W~~l~~i 1221 (2526)
..|+|.+.+|+.+|||+..+|+.-+++|-.+.+-.|+..+-....++..+
T Consensus 1 ~~W~Y~d~~~~iqGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~~~l~~~ 50 (56)
T smart00444 1 VLWLYKDPDGEIQGPFTASQMSQWYQAGYFPDSLQIKRLNEPPYDTLGDL 50 (56)
T ss_pred CEEEEECCCCCEeCCcCHHHHHHHHHCCCCCCCeEEEEcCCCCCCcchhh
Confidence 36999999999999999999999999999999999999887776666544
No 79
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.32 E-value=0.95 Score=47.22 Aligned_cols=97 Identities=24% Similarity=0.263 Sum_probs=76.2
Q ss_pred hhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhCC-hhHHHHHh
Q 000056 2334 HVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAAS-TTCAEAMA 2412 (2526)
Q Consensus 2334 ~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~s-~~Cv~ala 2412 (2526)
.+...|.+|.|++.|.+.+ ..++..++..|..++.+ ..|...+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-----------------------------------~~~~~~a~~~l~~l~~~~~~~~~~~~ 46 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-----------------------------------ENVQREAAWALSNLSAGNNDNIQAVV 46 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-----------------------------------HHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4567899999999988532 25788999999999988 78888888
Q ss_pred hcCCCCCcchHHHHHHhhccCch--HhHHHHHHHHHhcCCccchHHHHHHHhhCcHHHHHHhcc
Q 000056 2413 ATSTGTPQVVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2413 ~~~~~~~~~v~~l~~a~~~~~~~--~la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
+.++ +|.+++.+...... .-|+-+|..+...+ +.-.....+.|+++.|+++|+
T Consensus 47 ~~~~-----i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~g~l~~l~~~l~ 101 (120)
T cd00020 47 EAGG-----LPALVQLLKSEDEEVVKAALWALRNLAAGP----EDNKLIVLEAGGVPKLVNLLD 101 (120)
T ss_pred HCCC-----hHHHHHHHhCCCHHHHHHHHHHHHHHccCc----HHHHHHHHHCCChHHHHHHHh
Confidence 7655 99999999875332 37888998887743 234556678899999999995
No 80
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=91.64 E-value=19 Score=48.51 Aligned_cols=118 Identities=21% Similarity=0.204 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhc-CChhHHHHHHhhcchHHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLT-TCASCLEAMVADGSSLLLLLQM 2104 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls-~n~~CVeaiA~~~~vl~~Ll~l 2104 (2526)
-..+.++|.++.++.++++..+.+.. +..|-.++.. +++.++..+++++..++ .+.+..+.+.. ..++..++..
T Consensus 136 a~~A~~~L~~l~~~~~~~~~l~~~~~-~~~L~~l~~~---~~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~e 210 (503)
T PF10508_consen 136 AKAAIKALKKLASHPEGLEQLFDSNL-LSKLKSLMSQ---SSDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKE 210 (503)
T ss_pred HHHHHHHHHHHhCCchhHHHHhCcch-HHHHHHHHhc---cCHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHH
Confidence 46788999999999999887666554 5666666654 24568888999887765 55555555554 4488888888
Q ss_pred HhhCcchH--HHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCC
Q 000056 2105 LHYAPACR--EGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQ 2149 (2526)
Q Consensus 2105 L~~~p~~~--~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~ 2149 (2526)
+.. .|.. ..++++|..|+.++...+...+.|.+.-|.+++.+..
T Consensus 211 L~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~ 256 (503)
T PF10508_consen 211 LDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSE 256 (503)
T ss_pred hcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccc
Confidence 876 5543 4599999999998888888888888888888888764
No 81
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.43 E-value=1.5 Score=45.79 Aligned_cols=111 Identities=25% Similarity=0.279 Sum_probs=83.7
Q ss_pred cCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCC-hhHHHHHHhhcchHHHHHHHHhh-CcchHHHHHHHHHHhhcch-
Q 000056 2050 KEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTC-ASCLEAMVADGSSLLLLLQMLHY-APACREGVLHVLYALASTP- 2126 (2526)
Q Consensus 2050 ~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n-~~CVeaiA~~~~vl~~Ll~lL~~-~p~~~~~vL~~L~aL~s~t- 2126 (2526)
.+.+..+.++|... +..+...++..|..++.+ .+|...+... .++..++.+|.. .+..+..++.+|..++.+.
T Consensus 6 ~~~i~~l~~~l~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 6 AGGLPALVSLLSSS---DENVQREAAWALSNLSAGNNDNIQAVVEA-GGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred cCChHHHHHHHHcC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 34555666777542 457889999999888877 7777777764 478888888875 3556677899999999766
Q ss_pred HHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHh
Q 000056 2127 ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLV 2168 (2526)
Q Consensus 2127 ~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~ 2168 (2526)
.......+.|++.+|++++... ...+|..++.+|..+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~----~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS----NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC----CHHHHHHHHHHHHHhh
Confidence 4566677889999999988653 5678889988887764
No 82
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=0.18 Score=58.29 Aligned_cols=51 Identities=39% Similarity=0.707 Sum_probs=43.8
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC----------chHHHHHHHH
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP----------EGREKFLAVQ 1572 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp----------~a~ekF~~I~ 1572 (2526)
.++|++||+.. ..+..+||++||++...+|||+.- .+.+++++|+
T Consensus 113 ~~~l~~l~~~~-------------------------~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~ 167 (174)
T COG1076 113 EDALKVLGVEI-------------------------KADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQ 167 (174)
T ss_pred hhHHHHhcCch-------------------------hhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 78999999985 557889999999999999999952 2788999999
Q ss_pred HHHHHh
Q 000056 1573 KAYERL 1578 (2526)
Q Consensus 1573 ~AYEvL 1578 (2526)
+||+-+
T Consensus 168 ~a~~~~ 173 (174)
T COG1076 168 EAYEDI 173 (174)
T ss_pred HHHHhc
Confidence 999853
No 83
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.38 E-value=25 Score=47.17 Aligned_cols=266 Identities=22% Similarity=0.308 Sum_probs=159.6
Q ss_pred HHHHHhhcchHHHHHHHHhhC--cchHHHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHH
Q 000056 2088 LEAMVADGSSLLLLLQMLHYA--PACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLL 2164 (2526)
Q Consensus 2088 VeaiA~~~~vl~~Ll~lL~~~--p~~~~~vL~~L~aL~s-~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL 2164 (2526)
++.+...+ +++-+..+|+.. |...-.+--+|-..+| +++--+..+.+|.|..+..++-. .+..+|++++-+|
T Consensus 102 i~~vi~~G-~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s----~~~~v~eQavWAL 176 (514)
T KOG0166|consen 102 IDEVIQSG-VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS----PSADVREQAVWAL 176 (514)
T ss_pred HHHHHHcC-cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC----CcHHHHHHHHHHH
Confidence 34444444 778888888642 4444444445555665 55677777899999888888754 3689999999999
Q ss_pred HHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000056 2165 GKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRV 2244 (2526)
Q Consensus 2165 ~kM~aDklhGPrV~~~L~KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~ 2244 (2526)
+.+..| ||.-|..+-. .+.+ ...++++..... ..|...+.=++.+++. +
T Consensus 177 gNIagd---s~~~Rd~vl~---~g~l--------~pLl~~l~~~~~-------~~~lRn~tW~LsNlcr--------g-- 225 (514)
T KOG0166|consen 177 GNIAGD---SPDCRDYVLS---CGAL--------DPLLRLLNKSDK-------LSMLRNATWTLSNLCR--------G-- 225 (514)
T ss_pred hccccC---ChHHHHHHHh---hcch--------HHHHHHhccccc-------hHHHHHHHHHHHHHHc--------C--
Confidence 999886 4554443322 1111 111222221111 2333333333333322 1
Q ss_pred ccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHH
Q 000056 2245 VDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSL 2324 (2526)
Q Consensus 2245 ~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~L 2324 (2526)
+||.=++ +=+..+|..+..++-.+ |++++.-..-|+..|
T Consensus 226 ------------------------------k~P~P~~----~~v~~iLp~L~~ll~~~-------D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 226 ------------------------------KNPSPPF----DVVAPILPALLRLLHST-------DEEVLTDACWALSYL 264 (514)
T ss_pred ------------------------------CCCCCcH----HHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHH
Confidence 1222222 23445777777777764 344444456677777
Q ss_pred HhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHH-HHhhC
Q 000056 2325 LRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVL-HQLAA 2403 (2526)
Q Consensus 2325 L~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vl-h~ls~ 2403 (2526)
--..+..-+.|--.|-+|+|+.+|.|... .+.-.|||-+ +.-+.
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~-----------------------------------~v~~PaLRaiGNIvtG 309 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSP-----------------------------------KVVTPALRAIGNIVTG 309 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCc-----------------------------------ccccHHHhhccceeec
Confidence 77888888999999999999999998542 0122345444 33344
Q ss_pred ChhHHHHHhhcCCCCCcchHHHHHHhhc-cCchH--hHHHHHHHHHhcCCccchHHHHHHHhhCcHHHHHHhcc
Q 000056 2404 STTCAEAMAATSTGTPQVVPILMKAIGW-QGGSI--LALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2404 s~~Cv~ala~~~~~~~~~v~~l~~a~~~-~~~~~--la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
++.=.+.+- +| .++|-|...+.. +...+ -||=|++-+-. ||. +=++.-+..|++|.|+.+|.
T Consensus 310 ~d~QTq~vi--~~---~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~~---~qiqaVida~l~p~Li~~l~ 374 (514)
T KOG0166|consen 310 SDEQTQVVI--NS---GALPVLSNLLSSSPKESIKKEACWTISNITA-GNQ---EQIQAVIDANLIPVLINLLQ 374 (514)
T ss_pred cHHHHHHHH--hc---ChHHHHHHHhccCcchhHHHHHHHHHHHhhc-CCH---HHHHHHHHcccHHHHHHHHh
Confidence 443333333 33 346667777763 44444 69999998887 543 34767778899999999995
No 84
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=88.71 E-value=30 Score=45.79 Aligned_cols=289 Identities=17% Similarity=0.227 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHhhCccchhhccc-----cCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHh--hcchH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFST-----KEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVA--DGSSL 2098 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s-----~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~--~~~vl 2098 (2526)
++.+|.-+--+|+.+|.....+.. .....+++.+|.. ++.-|+..+..+|..+..... ..+.. ....+
T Consensus 71 vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~---~d~~i~~~a~~iLt~l~~~~~--~~~~~~~l~~~~ 145 (429)
T cd00256 71 VRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR---QDQFIVHMSFSILAKLACFGL--AKMEGSDLDYYF 145 (429)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC---CchhHHHHHHHHHHHHHhcCc--cccchhHHHHHH
Confidence 456677777888888875544432 2334556666653 456789999999987764321 00100 01122
Q ss_pred HHHHHHHhh--CcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHH------------------
Q 000056 2099 LLLLQMLHY--APACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRA------------------ 2158 (2526)
Q Consensus 2099 ~~Ll~lL~~--~p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~------------------ 2158 (2526)
..|...+.. ..+....++++|..|...++......+.+|+..|.++|.+.. .+.|.--
T Consensus 146 ~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~--~~~Ql~Y~~ll~lWlLSF~~~~~~~ 223 (429)
T cd00256 146 NWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNAT--LGFQLQYQSIFCIWLLTFNPHAAEV 223 (429)
T ss_pred HHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhcc--ccHHHHHHHHHHHHHHhccHHHHHh
Confidence 334444442 245566788999999988888877888889999999987632 1112111
Q ss_pred ----HHHHHHHHHhcCCCCChH-HHH---HHHhhCcH--------HHHHHHhcCchhhHHHhhcccCcC-cccccC-HHH
Q 000056 2159 ----AAASLLGKLVGQPMHGPR-VAI---TLARFLPD--------GLVSVIRDGPGEAVVSALEQTTET-PELVWT-PAM 2220 (2526)
Q Consensus 2159 ----~aA~lL~kM~aDklhGPr-V~~---~L~KfLP~--------~fvdamrdsP~~a~v~~fds~~En-PELIWn-~~m 2220 (2526)
.....|..+..+- .=.| ||. +|--++.. .+...|-+..--.+++.+...+=+ |||.=+ +..
T Consensus 224 ~~~~~~i~~l~~i~k~s-~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L 302 (429)
T cd00256 224 LKRLSLIQDLSDILKES-TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFL 302 (429)
T ss_pred hccccHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 1122222222110 0122 222 22333331 244455553333445555555543 444211 112
Q ss_pred HHHHHHHHHHHH--HHHHHHHhcCCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChHHHHH---HHHHHH
Q 000056 2221 AASLSAQISTMA--SDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLE---GLLDQY 2295 (2526)
Q Consensus 2221 R~~v~~~i~~~~--~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~---~Ll~~~ 2295 (2526)
.+.+.+.+.++. ++|.++-.. +..+|. |.+-. ++|=--|-.+|-+ +++.+.
T Consensus 303 ~e~L~~~~k~ltsfD~Y~~El~s-g~L~WS-p~H~s----------------------e~FW~EN~~kf~~~~~~llk~L 358 (429)
T cd00256 303 TEELKNSVQDLSSFDEYKSELRS-GRLHWS-PVHKS----------------------EKFWRENADRLNEKNYELLKIL 358 (429)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhc-CCccCC-CCCCC----------------------chHHHHHHHHHHhcchHHHHHH
Confidence 333333333332 444444444 447887 44321 1111112233332 367777
Q ss_pred HHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhc
Q 000056 2296 LSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEG 2352 (2526)
Q Consensus 2296 ~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~ 2352 (2526)
++.+.+.+ |+..+....-=+-++.|++|.=-+.+-.+|.=.++.++|.|++
T Consensus 359 ~~iL~~s~------d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d 409 (429)
T cd00256 359 IHLLETSV------DPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHED 409 (429)
T ss_pred HHHHhcCC------CcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCC
Confidence 77775432 2223344455667899999999999999999999999999876
No 85
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=87.38 E-value=1.3 Score=49.08 Aligned_cols=57 Identities=25% Similarity=0.361 Sum_probs=39.6
Q ss_pred CCChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHh
Q 000056 1499 DLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERL 1578 (2526)
Q Consensus 1499 ~~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvL 1578 (2526)
.|+.+||++||||+. ..+.++|.+.|.+|-...+|+|++. ---=.+|..|.|+|
T Consensus 54 ~Mtl~EA~~ILnv~~-------------------------~~~~eeI~k~y~~Lf~~Nd~~kGGS-fYLQSKV~rAKErl 107 (127)
T PF03656_consen 54 GMTLDEARQILNVKE-------------------------ELSREEIQKRYKHLFKANDPSKGGS-FYLQSKVFRAKERL 107 (127)
T ss_dssp ---HHHHHHHHT--G---------------------------SHHHHHHHHHHHHHHT-CCCTS--HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCC-------------------------ccCHHHHHHHHHHHHhccCCCcCCC-HHHHHHHHHHHHHH
Confidence 589999999999994 5688999999999999999998753 22223678888888
Q ss_pred hcc
Q 000056 1579 QAT 1581 (2526)
Q Consensus 1579 sd~ 1581 (2526)
-.+
T Consensus 108 ~~E 110 (127)
T PF03656_consen 108 EQE 110 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 86
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=85.27 E-value=8.2 Score=51.95 Aligned_cols=139 Identities=23% Similarity=0.305 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHh
Q 000056 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLH 2106 (2526)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~ 2106 (2526)
.+++.++.++++++.+....+...+-++.+..|+... +..+.+.|..+|..++.+..-.+.+.... .+..|..++.
T Consensus 95 ~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~---d~~Va~~A~~~L~~l~~~~~~~~~l~~~~-~~~~L~~l~~ 170 (503)
T PF10508_consen 95 RLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP---DLSVAKAAIKALKKLASHPEGLEQLFDSN-LLSKLKSLMS 170 (503)
T ss_pred HHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC---cHHHHHHHHHHHHHHhCCchhHHHHhCcc-hHHHHHHHHh
Confidence 5578889999998888777777788788888898763 56899999999999998887776665433 4666777776
Q ss_pred h-CcchHHHHHHHHHHhhcch-HHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCC
Q 000056 2107 Y-APACREGVLHVLYALASTP-ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHG 2174 (2526)
Q Consensus 2107 ~-~p~~~~~vL~~L~aL~s~t-~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhG 2174 (2526)
. ....+-.+++++-.+++.+ +........|.+..+++.|.+ ...=.|.-+.++|..|.. .-||
T Consensus 171 ~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~----dDiLvqlnalell~~La~-~~~g 235 (503)
T PF10508_consen 171 QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS----DDILVQLNALELLSELAE-TPHG 235 (503)
T ss_pred ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC----ccHHHHHHHHHHHHHHHc-ChhH
Confidence 5 3344556889998888754 555555667777778887765 245678899999999988 5566
No 87
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=83.87 E-value=0.97 Score=59.54 Aligned_cols=40 Identities=28% Similarity=0.527 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCc----------hHHHHHHHHHHHHHh
Q 000056 1539 NIDEEKLKRQYRKLAMKYHPDKNPE----------GREKFLAVQKAYERL 1578 (2526)
Q Consensus 1539 ~a~e~~IKkAYRkLa~k~HPDKnp~----------a~ekF~~I~~AYEvL 1578 (2526)
-.+...+||+|||.++..||||-++ +++-|-.+++|++.-
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 3477899999999999999999863 455566666666543
No 88
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=83.61 E-value=5.2 Score=47.39 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=74.3
Q ss_pred CCCcceEEEEeccceeeee------cCCccceEEeecccceeEEeecCCCCceEEEEecCCccceeeccCchhHHHHHHH
Q 000056 293 HGGAVSRQLILTRVSLVER------RPDNYEAVIVRPLSAVSSLVRFAEEPQMFAIEFNDGCPIHVYASTSRDSLLAAVR 366 (2526)
Q Consensus 293 ~~~~v~R~L~Lt~~~lvER------dp~tY~vv~~rpL~~i~aLVR~~~dpQ~f~IE~~dG~~~r~Y~s~~RD~LLAslL 366 (2526)
++-+.+|.|+||+..|-=- ++.+|.+=-.-||++|.++.-+.-.++.|.|--.+.- =-++.+..+--+++.|.
T Consensus 62 ~~K~~~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l~~I~~IsvS~~~D~~~vihv~~~~-D~il~~~~k~Elv~~L~ 140 (199)
T PF06017_consen 62 RNKPQPRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPLSDITGISVSPLSDNFFVIHVPGEG-DLILESDFKTELVTILC 140 (199)
T ss_pred CCCccceEEEEeCCeEEEEEEeecCCceeeEEEeccCcccccEEEEccCCCCEEEEEECCCC-CEEEEeCcHHHHHHHHH
Confidence 6779999999999955444 6778888888899999999999999999999985432 35677788899999999
Q ss_pred HHHHhhCCCCeeeecc
Q 000056 367 DVLQTEGHYPVPVLPR 382 (2526)
Q Consensus 367 D~~rasGn~~V~V~~~ 382 (2526)
+.++...+++++|.-+
T Consensus 141 ~~~~~~~~~~l~v~~~ 156 (199)
T PF06017_consen 141 KAYKKATGKKLPVNFS 156 (199)
T ss_pred HHHHHHhCCceeEEEe
Confidence 9999998888887543
No 89
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=83.60 E-value=15 Score=45.49 Aligned_cols=170 Identities=19% Similarity=0.283 Sum_probs=113.7
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhcHHHHHHhCCchHHHHHHHhhhhccCCCccccccchhhcccccCCccee
Q 000056 1095 AHITVLLDRTDDRALRHRLLLLLKVLMKVLANIEACVLVGGCVLAVDLLTVVHETSERTAIPLQSNLLAATAFMEPFKEW 1174 (2526)
Q Consensus 1095 ~y~~~Ll~~~~d~~~R~~Lll~~~~L~~~~~N~~~~v~~~G~~llvdLltlah~~~~r~~~~~q~n~i~a~~~~~~~KeW 1174 (2526)
.-++.+|+.+.|+..+...+..+......+.|=+.+-+.||+.++.+++.--+.. .+..++.|-+.+.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~-------vr~~AL~aL~Nls----- 82 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPS-------VREKALNALNNLS----- 82 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChH-------HHHHHHHHHHhcC-----
Confidence 4588999999999999999988888888899999999999999999999432221 2223333333221
Q ss_pred EeecCCCcccccccHHHHHHHHhcCCcCcCCceecccCcchhhchhhhhH-HHHhhccCCcCChhhHHHHHHHHHHHhhc
Q 000056 1175 MFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKLRDIREL-RWALAVRVPVLTPTQVGEAALAILHNMVS 1253 (2526)
Q Consensus 1175 yY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~W~~l~~ipeL-rw~la~g~p~l~~~~l~~~~L~iL~~~~~ 1253 (2526)
.+.+. ...++.. |+++ ++++. + |.=++.| ...|++|..|+-
T Consensus 83 ----~~~en-----~~~Ik~~-------------------------i~~Vc~~~~s-~-~lns~~Q--~agLrlL~nLtv 124 (254)
T PF04826_consen 83 ----VNDEN-----QEQIKMY-------------------------IPQVCEETVS-S-PLNSEVQ--LAGLRLLTNLTV 124 (254)
T ss_pred ----CChhh-----HHHHHHH-------------------------HHHHHHHHhc-C-CCCCHHH--HHHHHHHHccCC
Confidence 01000 1111111 3333 22222 1 2223444 458999999864
Q ss_pred cccCCCCCCCccccCcchhhhccCCCchHHHHHhhhcCCchHHHHHHHHHHHHHhhChHHHHHHHhhhhh-hhhhhcCC
Q 000056 1254 AHSDLDDAGEIVTPTPRVKWILSSSRCLPHIAQAMLSGEPSIVEAAAALLKAVVTRNPKAMIRLYSTGAF-YFALAYPG 1331 (2526)
Q Consensus 1254 ~~p~~d~~g~ii~P~Prvkr~Ls~~~~LphlvQlLLt~~p~lve~~~~LL~~l~~~n~~~~~~Ly~tG~f-~f~L~y~g 1331 (2526)
+.+ ...++. .++|+++++|.+++..+=..++.+|..+.. ||.....|..+.+. -|+.++..
T Consensus 125 -----~~~---------~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~ 186 (254)
T PF04826_consen 125 -----TND---------YHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNS 186 (254)
T ss_pred -----Ccc---------hhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHcc
Confidence 222 123443 379999999999999999999999999877 99878999999986 45545544
No 90
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.20 E-value=68 Score=41.14 Aligned_cols=304 Identities=18% Similarity=0.223 Sum_probs=179.2
Q ss_pred CCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhhCcc-hHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhh
Q 000056 2067 DSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHYAPA-CREGVLHVLYALASTPELAWAAAKHGGVVYILELL 2145 (2526)
Q Consensus 2067 ~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~~p~-~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL 2145 (2526)
...+|..+..++-.|+.-..=-..||..+ .+..+.++-++--. .+--++..|..|....+=-++....||+.+|..++
T Consensus 139 ~vevqcnaVgCitnLaT~d~nk~kiA~sG-aL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll 217 (550)
T KOG4224|consen 139 GVEVQCNAVGCITNLATFDSNKVKIARSG-ALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLL 217 (550)
T ss_pred CcEEEeeehhhhhhhhccccchhhhhhcc-chhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhh
Confidence 45677777777744443332223477655 56677775543221 12337788888887778888999999999999998
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhC---cHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHH
Q 000056 2146 LPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFL---PDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAA 2222 (2526)
Q Consensus 2146 ~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~KfL---P~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~ 2222 (2526)
-.+ ++.+|.-+.-.++-+.-|. +-|.+|.+-= -|.+++-|+|+-+. ++
T Consensus 218 ~s~----d~dvqyycttaisnIaVd~----~~Rk~Laqaep~lv~~Lv~Lmd~~s~k--vk------------------- 268 (550)
T KOG4224|consen 218 KSG----DLDVQYYCTTAISNIAVDR----RARKILAQAEPKLVPALVDLMDDGSDK--VK------------------- 268 (550)
T ss_pred ccC----ChhHHHHHHHHhhhhhhhH----HHHHHHHhcccchHHHHHHHHhCCChH--HH-------------------
Confidence 754 5777777877777776553 3344444332 24678888776543 12
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhcc
Q 000056 2223 SLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAAT 2302 (2526)
Q Consensus 2223 ~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~ 2302 (2526)
+.+..+-+..+.| ++++-|++=+|- +--+++++..+
T Consensus 269 ----cqA~lALrnlasd-----------------t~Yq~eiv~ag~-----------------------lP~lv~Llqs~ 304 (550)
T KOG4224|consen 269 ----CQAGLALRNLASD-----------------TEYQREIVEAGS-----------------------LPLLVELLQSP 304 (550)
T ss_pred ----HHHHHHHhhhccc-----------------chhhhHHHhcCC-----------------------chHHHHHHhCc
Confidence 1112222211111 122223332221 11233444321
Q ss_pred CCCCCCCCCchHHHHHHHHHHH--HhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCC
Q 000056 2303 HYDTQAIDPELPLLLSAALVSL--LRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSA 2380 (2526)
Q Consensus 2303 ~~e~~~~d~~ll~llt~Alv~L--L~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2380 (2526)
+..++....-|. +..||.=.--|.-.|.+--|+++|....+
T Consensus 305 ----------~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dn--------------------------- 347 (550)
T KOG4224|consen 305 ----------MGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDN--------------------------- 347 (550)
T ss_pred ----------chhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCc---------------------------
Confidence 123344455555 88899998999999999999999986321
Q ss_pred CCCCChhhhhhhhHHHHHHHhhC-ChhHHHHHhhcCCCCCcchHHHHHHhhccCch----HhHHHHHHHHHhcCCccchH
Q 000056 2381 QPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGTPQVVPILMKAIGWQGGS----ILALETLKRVVVAGNRARDA 2455 (2526)
Q Consensus 2381 ~~~~~~~~~~~~s~l~vlh~ls~-s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~----~la~etL~r~~~~~~r~~~~ 2455 (2526)
|++...|...|.-||. |+--+..+-.... ||.++.-....+-+ +.||=+. ++-+ |.
T Consensus 348 -------EeiqchAvstLrnLAasse~n~~~i~esgA-----i~kl~eL~lD~pvsvqseisac~a~---Lal~----d~ 408 (550)
T KOG4224|consen 348 -------EEIQCHAVSTLRNLAASSEHNVSVIRESGA-----IPKLIELLLDGPVSVQSEISACIAQ---LALN----DN 408 (550)
T ss_pred -------hhhhhhHHHHHHHHhhhhhhhhHHHhhcCc-----hHHHHHHHhcCChhHHHHHHHHHHH---HHhc----cc
Confidence 3566788999999998 7777888876644 77666665544422 2333222 1111 11
Q ss_pred HHHHHHhhCcHHHHHHhcccccCCCCC--------Cccc--------cccccccccchhHH
Q 000056 2456 LVAQGLKVGLVDVLLGLLDWRAGGRNG--------LSSQ--------MKWNESEASIGRVL 2500 (2526)
Q Consensus 2456 Lv~qaL~~~lv~~LL~lLd~~~~~~~g--------~~~~--------~~~~~~~a~~~~v~ 2500 (2526)
--..-++.|++|.|..|+++..+.-.| +|+. .+|+.-..+|..-+
T Consensus 409 ~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L 469 (550)
T KOG4224|consen 409 DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRL 469 (550)
T ss_pred cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHH
Confidence 122346889999999999764332222 3333 67877766554333
No 91
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=81.31 E-value=3 Score=48.10 Aligned_cols=88 Identities=20% Similarity=0.184 Sum_probs=69.6
Q ss_pred chhhHHHhcCHHHHHHHHHHhhhcccCCCCCCCccceeehhhhhhhhhhccChHHHHHHHhhcchHHHHHHhhccccchh
Q 000056 1661 NGEELVRDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCTELELVPG 1740 (2526)
Q Consensus 1661 NaeeL~re~G~~~L~~~lsrC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l~l~~~~~ 1740 (2526)
-.+++...||+..|.+++.++..--..+ +....+...++|||........+++.+...+..+.-|+.|+.-. .+.
T Consensus 99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~----~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~ 173 (187)
T PF06371_consen 99 WVQEFLELGGLEALLNVLSKLNKKKEKS----EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSP-NIK 173 (187)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTHHCTC----TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TT-SHH
T ss_pred HHHHhccCCCHHHHHHHHHHhhhhhhhc----chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCC-CHH
Confidence 3677888999999999999886543322 34455667899999999999999999999999999999998744 357
Q ss_pred HHHHHHHHHHHhh
Q 000056 1741 AVDAALQTIAHVS 1753 (2526)
Q Consensus 1741 l~~aALe~v~~~a 1753 (2526)
+...|+|++..+|
T Consensus 174 ~r~~~leiL~~lc 186 (187)
T PF06371_consen 174 TRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8889999999886
No 92
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.02 E-value=15 Score=46.88 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=92.4
Q ss_pred CccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhhCcc-hH-HHHHH
Q 000056 2040 NPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHYAPA-CR-EGVLH 2117 (2526)
Q Consensus 2040 nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~~p~-~~-~~vL~ 2117 (2526)
+=+.+.-+.+++.+.++..++.. ++..++..|..||...++|++-++.-.-+...+..|+..+.+..+ .. ..+|-
T Consensus 113 ~iDnAndl~~~ggl~~ll~~l~~---~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~ 189 (342)
T KOG2160|consen 113 DIDNANDLISLGGLVPLLGYLEN---SDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALF 189 (342)
T ss_pred hhhhHHhHhhccCHHHHHHHhcC---CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHH
Confidence 44566667788888888887765 467899999999988888888777766666688889888875432 22 34666
Q ss_pred HHHHhhc-chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhc
Q 000056 2118 VLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVG 2169 (2526)
Q Consensus 2118 ~L~aL~s-~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~a 2169 (2526)
.+++|.. +.....+.++-+|+.-|-+++.. +......+..++.+++.+..
T Consensus 190 AissLIRn~~~g~~~fl~~~G~~~L~~vl~~--~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 190 AISSLIRNNKPGQDEFLKLNGYQVLRDVLQS--NNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc--CCcchHHHHHHHHHHHHHHH
Confidence 6666654 55678888999999999999976 23456677778888877754
No 93
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=78.37 E-value=13 Score=46.04 Aligned_cols=160 Identities=18% Similarity=0.191 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHh
Q 000056 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLH 2106 (2526)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~ 2106 (2526)
+.++.||.|+=.+-.+ ..++ ..++..+++-.... ..++.+|..+|++|..||.....-.-++. .++.++.+|.
T Consensus 72 ~~AL~aL~Nls~~~en-~~~I--k~~i~~Vc~~~~s~-~lns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~ 144 (254)
T PF04826_consen 72 EKALNALNNLSVNDEN-QEQI--KMYIPQVCEETVSS-PLNSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLS 144 (254)
T ss_pred HHHHHHHHhcCCChhh-HHHH--HHHHHHHHHHHhcC-CCCCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHH
Confidence 3456666655322222 1112 23555666654332 34678999999999999977777666654 4566777776
Q ss_pred hC-cchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhC
Q 000056 2107 YA-PACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFL 2185 (2526)
Q Consensus 2107 ~~-p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~KfL 2185 (2526)
.. .....-+|.+|..|+.++.++++.+.++++.-++.+|..++ +.+.-..+..++..+...---+..+. +-.+|=
T Consensus 145 ~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~---~~~~l~~~l~~~~ni~~~~~~~~~~~-~~~~~~ 220 (254)
T PF04826_consen 145 SGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSE---SKENLLRVLTFFENINENIKKEAYVF-VQDDFS 220 (254)
T ss_pred cCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCC---ccHHHHHHHHHHHHHHHhhCccccee-ccccCC
Confidence 53 33344599999999999999999999999999999998653 22333333333434333211111111 224455
Q ss_pred cHHHHHHHhcCc
Q 000056 2186 PDGLVSVIRDGP 2197 (2526)
Q Consensus 2186 P~~fvdamrdsP 2197 (2526)
...+...++++.
T Consensus 221 ~~~L~~~~~e~~ 232 (254)
T PF04826_consen 221 EDSLFSLFGESS 232 (254)
T ss_pred chhHHHHHccHH
Confidence 556666666653
No 94
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=74.52 E-value=6 Score=46.86 Aligned_cols=87 Identities=24% Similarity=0.329 Sum_probs=68.2
Q ss_pred ceEEEEEEEeeccccc-ceEEEEeecCeeeee------CCCCcccccccccccccccccccccCCCCCCcEEEEEeecCC
Q 000056 20 EYLARYLVVKHSWRGR-YKRILCISNATIITL------DPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGR 92 (2526)
Q Consensus 20 ~~~a~y~vtKhSWrgk-YkRif~Ig~~~i~T~------nP~tlevTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~ 92 (2526)
-.-|+. |+|..=++| =+|+|.|++.+|.-+ ++.+..+--+=++ ++|.+|+.+ ..+-+-|+|+++.
T Consensus 50 vlFs~~-v~K~nr~~K~~~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l-~~I~~IsvS---~~~D~~~vihv~~--- 121 (199)
T PF06017_consen 50 VLFSDR-VQKYNRRNKPQPRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPL-SDITGISVS---PLSDNFFVIHVPG--- 121 (199)
T ss_pred eEEEEE-EEEecCCCCccceEEEEeCCeEEEEEEeecCCceeeEEEeccCc-ccccEEEEc---cCCCCEEEEEECC---
Confidence 333444 899554554 579999999999999 7888999999999 799998874 2333568999944
Q ss_pred CcccceeeechhhhHHHHHHHHhh
Q 000056 93 GKFKAFKFSSRFRASILTELHRIR 116 (2526)
Q Consensus 93 ~K~~~mkFss~~Ra~lLT~l~r~r 116 (2526)
+ ..+-|+|.++.|++|-|....
T Consensus 122 -~-~D~il~~~~k~Elv~~L~~~~ 143 (199)
T PF06017_consen 122 -E-GDLILESDFKTELVTILCKAY 143 (199)
T ss_pred -C-CCEEEEeCcHHHHHHHHHHHH
Confidence 3 447899999999999998765
No 95
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=73.58 E-value=33 Score=44.82 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhhhhc-HHHHHHhCCchHHHHHHHhh-hhccCCCccccccchhhcccccCCcceeEeecCCCcccccccH
Q 000056 1112 RLLLLLKVLMKVLAN-IEACVLVGGCVLAVDLLTVV-HETSERTAIPLQSNLLAATAFMEPFKEWMFIDKDGAQVGPVEK 1189 (2526)
Q Consensus 1112 ~Lll~~~~L~~~~~N-~~~~v~~~G~~llvdLltla-h~~~~r~~~~~q~n~i~a~~~~~~~KeWyY~~~~g~q~GP~s~ 1189 (2526)
+.+.+++.++....+ ...|.+.+|+.+++|.+..= +...+. ....|+
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~-----------------~~~~~~-------------- 51 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE-----------------NKNEEA-------------- 51 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----------------ccccCC--------------
Confidence 467788888866555 77899999999999998521 111110 000000
Q ss_pred HHHHHHHhcCCcCcCCceecccCc-chhhchhhhhHHHHhhccCCcCChhhHHHHHHHHHHHhhccccCCCCCCCccccC
Q 000056 1190 DAIRRFWSKKAIDWTTRCWASGML-DWKKLRDIRELRWALAVRVPVLTPTQVGEAALAILHNMVSAHSDLDDAGEIVTPT 1268 (2526)
Q Consensus 1190 ~eLk~l~~~g~I~~~T~vWa~GM~-~W~~l~~ipeLrw~la~g~p~l~~~~l~~~~L~iL~~~~~~~p~~d~~g~ii~P~ 1268 (2526)
.+.+.+++ ..+.++ .|-+..+..-|||+ |+.++.++.+.+.. +..+
T Consensus 52 --------~~~~~~~~--~~~~~~~~~i~~~r~~llK~l-----------------Lk~l~~~~~~~~~~---~~~l--- 98 (379)
T PF06025_consen 52 --------GSGIPPEY--KESSVDGYSISYQRQQLLKSL-----------------LKFLSHAMQHSGGF---GDRL--- 98 (379)
T ss_pred --------CCCCCCCc--ccccccccccCHHHHHHHHHH-----------------HHHHHHHhccCCCc---cccc---
Confidence 00111111 011222 45555666666774 45555655521111 1122
Q ss_pred cchhhhccC----CCchHHHHHhhhcCCchHHHHHHHHHHHHHhhChHHHHHHHhhhhhhhhhh-cCCCChhhHHHHhhh
Q 000056 1269 PRVKWILSS----SRCLPHIAQAMLSGEPSIVEAAAALLKAVVTRNPKAMIRLYSTGAFYFALA-YPGSNLYSIAQLFSV 1343 (2526)
Q Consensus 1269 Prvkr~Ls~----~~~LphlvQlLLt~~p~lve~~~~LL~~l~~~n~~~~~~Ly~tG~f~f~L~-y~gsn~l~ia~lL~~ 1343 (2526)
|-|-+ +.+|-+|.+---.|-|.++--+++++..++.+-|...+-|...|+...+|- ++...++|..+.|..
T Consensus 99 ----rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~ 174 (379)
T PF06025_consen 99 ----RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS 174 (379)
T ss_pred ----ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence 33444 567888888888999999999999999999988999999999999998884 554667777776655
No 96
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.05 E-value=28 Score=44.14 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=98.0
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhcHHHHHHhCCchHHHHHHHhhhhccCCCccccccchhhcccccCCccee
Q 000056 1095 AHITVLLDRTDDRALRHRLLLLLKVLMKVLANIEACVLVGGCVLAVDLLTVVHETSERTAIPLQSNLLAATAFMEPFKEW 1174 (2526)
Q Consensus 1095 ~y~~~Ll~~~~d~~~R~~Lll~~~~L~~~~~N~~~~v~~~G~~llvdLltlah~~~~r~~~~~q~n~i~a~~~~~~~KeW 1174 (2526)
.-++..|.--.||-.-..+...+.+|.-...=.+.+.+.||+..|+.++.-+-++-
T Consensus 244 ~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~------------------------ 299 (461)
T KOG4199|consen 244 TALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQG------------------------ 299 (461)
T ss_pred HHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhh------------------------
Confidence 33455555566775555666666777666666788899999999999983222111
Q ss_pred EeecCCCcccccccHHHHHHHHhcCCcCcCCceecccCcchhhchhhhhHHHHhhccCCcCChhhHHHHHHHHHHHhhcc
Q 000056 1175 MFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKLRDIRELRWALAVRVPVLTPTQVGEAALAILHNMVSA 1254 (2526)
Q Consensus 1175 yY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~W~~l~~ipeLrw~la~g~p~l~~~~l~~~~L~iL~~~~~~ 1254 (2526)
++ .++..||+.|..+..
T Consensus 300 -----------------~r---------------------------------------------~l~k~~lslLralAG- 316 (461)
T KOG4199|consen 300 -----------------NR---------------------------------------------TLAKTCLSLLRALAG- 316 (461)
T ss_pred -----------------HH---------------------------------------------HHHHHHHHHHHHHhC-
Confidence 11 345578999988876
Q ss_pred ccCCCCCCCccccCcchhhhccCCCchHHHHHhhhcC--CchHHHHHHHHHHHHHhhChHHHHHHHhhhhhhhhh
Q 000056 1255 HSDLDDAGEIVTPTPRVKWILSSSRCLPHIAQAMLSG--EPSIVEAAAALLKAVVTRNPKAMIRLYSTGAFYFAL 1327 (2526)
Q Consensus 1255 ~p~~d~~g~ii~P~Prvkr~Ls~~~~LphlvQlLLt~--~p~lve~~~~LL~~l~~~n~~~~~~Ly~tG~f~f~L 1327 (2526)
-| .||..+-+.+-++.|+|+++++ +|-+++.++-.+..|.-+.|+--.+.+.+|+--.++
T Consensus 317 ---~D----------svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~av 378 (461)
T KOG4199|consen 317 ---SD----------SVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAV 378 (461)
T ss_pred ---CC----------chHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHH
Confidence 12 3678888899999999999986 677999999999999999999677778888766555
No 97
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=72.25 E-value=13 Score=41.13 Aligned_cols=78 Identities=10% Similarity=0.112 Sum_probs=55.7
Q ss_pred CCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCC-CccccccCCCCChHH
Q 000056 135 NSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGR-KSKAFQAAPGTTNSA 213 (2526)
Q Consensus 135 k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~-~~r~~l~~~~~~~~~ 213 (2526)
++.|.++.|.|++.||..+||.++.+++.++-++|. +. .+ |+.. -.|+..--.|. .-.-|+|.|+..-.+
T Consensus 36 ~~~~~~v~l~Vs~~~l~l~d~~t~~~l~~~~i~~Is---f~--~~--gk~~--r~FafI~~~~~~~~~CHVF~c~~~a~~ 106 (123)
T cd01216 36 WEDWKDLNMDLAPSTLSLIDPDNLTVLHECRVRYLS---FW--GV--GRDV--RDFAFIMRTERRRFMCHVFRCEPNAGA 106 (123)
T ss_pred cccCeEEEEEEecCcEEEEcCCCCeEEEEEEeeEEE---EE--Ec--CCCC--cEEEEEEEcCCCeEEEEEEEcCCCHHH
Confidence 688999999999999999999999999999988885 44 22 1111 44443212332 222788989877777
Q ss_pred HHHHHHHH
Q 000056 214 IVSSLTKT 221 (2526)
Q Consensus 214 ii~~i~~~ 221 (2526)
|.+.|.++
T Consensus 107 i~~tv~~a 114 (123)
T cd01216 107 LATTVEAA 114 (123)
T ss_pred HHHHHHHH
Confidence 87777654
No 98
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=70.54 E-value=55 Score=38.04 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=92.2
Q ss_pred HHHHHHhCCchHHHHHHHhhhhccCCCccccccchhhcccccCCcceeEeecCCCcccccccHHHHHHHHhcCCcCcCCc
Q 000056 1127 IEACVLVGGCVLAVDLLTVVHETSERTAIPLQSNLLAATAFMEPFKEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTR 1206 (2526)
Q Consensus 1127 ~~~~v~~~G~~llvdLltlah~~~~r~~~~~q~n~i~a~~~~~~~KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~ 1206 (2526)
+.+|+..||+.+|++++--... ..|++ |... -++...+.+|...|.+.|+++
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~-----------------------~~~~~----~~~L-a~~L~af~eLMeHg~vsWd~l 55 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTE-----------------------IQPCK----GEIL-AYALTAFVELMEHGIVSWDTL 55 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCc-----------------------cCcch----HHHH-HHHHHHHHHHHhcCcCchhhc
Confidence 4689999999999998811110 00111 0001 134556667777777666552
Q ss_pred eecccCcchhhchhhhhHHHHhhccCCcCChhhHHHHHHHHHHHhhccccCCCCCCCccccCcchhhhccCCCchHHHHH
Q 000056 1207 CWASGMLDWKKLRDIRELRWALAVRVPVLTPTQVGEAALAILHNMVSAHSDLDDAGEIVTPTPRVKWILSSSRCLPHIAQ 1286 (2526)
Q Consensus 1207 vWa~GM~~W~~l~~ipeLrw~la~g~p~l~~~~l~~~~L~iL~~~~~~~p~~d~~g~ii~P~Prvkr~Ls~~~~LphlvQ 1286 (2526)
= .+=++-....-........+...+|.||.+|+...|. ....+.+.-.++-|+.
T Consensus 56 ~-------------~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~-------------ly~~V~~evt~~~Li~ 109 (160)
T PF11841_consen 56 S-------------DSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPK-------------LYQLVEQEVTLESLIR 109 (160)
T ss_pred c-------------HHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHH-------------HHHHHhccCCHHHHHH
Confidence 1 1111222111111112567778999999998884442 2345556677788888
Q ss_pred hhhcCCchHHHHHHHHHHHHHhhChHHHHHHHhhhhhhhhhhcCCCChhhHHHHhhhhhhhhcc
Q 000056 1287 AMLSGEPSIVEAAAALLKAVVTRNPKAMIRLYSTGAFYFALAYPGSNLYSIAQLFSVTHVHQAF 1350 (2526)
Q Consensus 1287 lLLt~~p~lve~~~~LL~~l~~~n~~~~~~Ly~tG~f~f~L~y~gsn~l~ia~lL~~~H~~Qa~ 1350 (2526)
.|-..++.+=.++..|+..+...-++.-. ..|++.|...|.+|..
T Consensus 110 hLq~~~~~iq~naiaLinAL~~kA~~~~r-------------------~~i~~~l~~k~~R~~I 154 (160)
T PF11841_consen 110 HLQVSNQEIQTNAIALINALFLKADDSKR-------------------KEIAETLSQKQIRQVI 154 (160)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCChHHH-------------------HHHHHHHHHHHHHHHH
Confidence 88889999999999999998876655222 2567777777766654
No 99
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.51 E-value=91 Score=39.84 Aligned_cols=73 Identities=26% Similarity=0.282 Sum_probs=51.3
Q ss_pred HHHHHHHHh--hCcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000056 2098 LLLLLQMLH--YAPACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2526)
Q Consensus 2098 l~~Ll~lL~--~~p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aD 2170 (2526)
+..|..++. ..|+.+...+-+|.+|+-+.++-+...+.||+--|+.++.++++..+...--.+.++|.++..+
T Consensus 243 l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~ 317 (461)
T KOG4199|consen 243 LTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS 317 (461)
T ss_pred HHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC
Confidence 333444443 2366666677888888889999999999999999999998765432322234567888888753
No 100
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=69.68 E-value=15 Score=39.55 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=53.5
Q ss_pred ceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCChHHHH
Q 000056 140 PYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTNSAIV 215 (2526)
Q Consensus 140 p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~r----~~l~~~~~~~~~ii 215 (2526)
++.|+||+..|...|+.++.++...+|+.+...+- | .+-|.+. -|+.+. +|.|.+. +-++|.
T Consensus 22 ~y~L~v~~~~l~L~d~~~~~~l~~WP~~~LRryG~----d-------~~~FsFE--AGRrC~tGeG~f~F~t~-~~~~if 87 (104)
T cd01203 22 SYMLRMGPTELQLKSEDLGATLYMWPYRFLRKYGR----D-------KGKFSFE--AGRRCTSGEGVFTFDTT-QGNEIF 87 (104)
T ss_pred eEEEEEcCCEEEEEcCCCCcEEEEeehHhhhhhcc----c-------CCEEEEE--ecCcCCCCCcEEEEecC-CHHHHH
Confidence 78999999999999999999999999999986443 4 3566653 554443 7888884 777888
Q ss_pred HHHHHHH
Q 000056 216 SSLTKTA 222 (2526)
Q Consensus 216 ~~i~~~A 222 (2526)
+.+.++-
T Consensus 88 ~~v~~~i 94 (104)
T cd01203 88 RAVEAAI 94 (104)
T ss_pred HHHHHHH
Confidence 8776543
No 101
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=67.89 E-value=48 Score=39.54 Aligned_cols=201 Identities=18% Similarity=0.184 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHhcHH---HHHHhhc-cchhHHHHHHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhhhh
Q 000056 498 TVMGFVACLRRLLTSRT---AASHVMS-FPAAVGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHATM 573 (2526)
Q Consensus 498 ~~~~~~~aLrRL~as~~---gf~~~~~-~p~~~~~v~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~~~ 573 (2526)
+-+..+..||+++.... ....|.. +...+..|.+.+....-.|+..|+.++..|...... ..+.
T Consensus 23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~--------~~~~---- 90 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS--------HFEP---- 90 (228)
T ss_dssp HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG--------GGHH----
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH--------hHHH----
Confidence 44567888888888761 1122211 112223577788888888999999999988752111 1111
Q ss_pred cccchhcccchhhHHHHHHhhcCCCChhHHHHHHHHHHhhhccCCCCCCCChHHHHHHHHHHHhhhhHHHHhhCCChhhH
Q 000056 574 MHTKSVLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMICEPHSETTQYTVFVELLRQVAGLRRRLFALFGHPAESV 653 (2526)
Q Consensus 574 ~~nKs~ll~~~~~~~~L~~~l~~~~~~aLv~~a~l~~l~~~lC~P~seTT~~~~f~~ll~~va~~gr~lf~Lf~hp~~~i 653 (2526)
.-..++..|++++.+. ...+..+.-+.+..++.. . .+. ..+ ....+...+.|.+..+
T Consensus 91 --------~~~~~l~~Ll~~~~~~--~~~i~~~a~~~L~~i~~~--~---~~~--~~~------~~~~l~~~~~~Kn~~v 147 (228)
T PF12348_consen 91 --------YADILLPPLLKKLGDS--KKFIREAANNALDAIIES--C---SYS--PKI------LLEILSQGLKSKNPQV 147 (228)
T ss_dssp --------HHHHHHHHHHHGGG-----HHHHHHHHHHHHHHHTT--S----H----HH------HHHHHHHHTT-S-HHH
T ss_pred --------HHHHHHHHHHHHHccc--cHHHHHHHHHHHHHHHHH--C---CcH--HHH------HHHHHHHHHhCCCHHH
Confidence 1234567777777763 456777777777776632 1 100 011 1344567789999999
Q ss_pred HhHHHHHHHHHHhhcHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChhHHhhhhhcCchhHhhh
Q 000056 654 RETVAVIMRTIAEEDAIAAESMRDAALRDGALLRHLLHAFFLPAGERREVSRQLVALWADSYQPALDLLSRVLPPGLVAY 733 (2526)
Q Consensus 654 ~~~aglimrai~Ee~~~~a~~mq~~AL~eGall~HL~~Alf~~~~~~r~lsr~LV~lW~~~~~~a~~LL~RilP~GLl~y 733 (2526)
+..+...+..+++.-..-...++.-. .=..+..-+...+-++..+-|+-+|.++..+....+..-+-+-..+||..=.+
T Consensus 148 R~~~~~~l~~~l~~~~~~~~~l~~~~-~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk~ 226 (228)
T PF12348_consen 148 REECAEWLAIILEKWGSDSSVLQKSA-FLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNIQKY 226 (228)
T ss_dssp HHHHHHHHHHHHTT-----GGG--HH-HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH--------------
T ss_pred HHHHHHHHHHHHHHccchHhhhcccc-hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhccccc
Confidence 99999999999888331111121111 00335555666666677778999999988886666555554446666655444
Q ss_pred c
Q 000056 734 L 734 (2526)
Q Consensus 734 L 734 (2526)
|
T Consensus 227 l 227 (228)
T PF12348_consen 227 L 227 (228)
T ss_dssp -
T ss_pred C
Confidence 4
No 102
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=67.83 E-value=16 Score=39.06 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=52.0
Q ss_pred CCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCC--CccccccCCCCChH
Q 000056 135 NSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGR--KSKAFQAAPGTTNS 212 (2526)
Q Consensus 135 k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~--~~r~~l~~~~~~~~ 212 (2526)
+.+|.++.|.|++.||..+|+.+++++..|+.++|. +...-+. ++.=|++.--..+ ...-|+|.|...-+
T Consensus 38 ~~~~~~v~l~vs~~gv~l~d~~~~~~l~~~~l~~Is---~~~~~~~-----~~~~F~~i~~~~~~~~~~CHvF~c~~~a~ 109 (123)
T cd00934 38 GEKGQKVILSVSSDGVKLIDPKTKEVLASHPIRRIS---FCAADPD-----DLRIFAFIAREPGSSRFECHVFKCEKVAE 109 (123)
T ss_pred ccCCCEEEEEEEcCcEEEEeCCCCcEEEeeccceEE---EEECCCC-----CCcEEEEEEEcCCCCcEEEEEEEeCchHH
Confidence 456679999999999999999999999999998886 4322221 2455554311222 33478888863325
Q ss_pred HHHHHHHH
Q 000056 213 AIVSSLTK 220 (2526)
Q Consensus 213 ~ii~~i~~ 220 (2526)
+|.+.|.+
T Consensus 110 ~i~~~l~~ 117 (123)
T cd00934 110 PIALTLGQ 117 (123)
T ss_pred HHHHHHHH
Confidence 56666543
No 103
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.81 E-value=25 Score=45.83 Aligned_cols=127 Identities=22% Similarity=0.331 Sum_probs=87.2
Q ss_pred HHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcC------C----hhHHHHHHhhcchHHHHHHH
Q 000056 2035 NILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT------C----ASCLEAMVADGSSLLLLLQM 2104 (2526)
Q Consensus 2035 nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~------n----~~CVeaiA~~~~vl~~Ll~l 2104 (2526)
+++...|++--.+.-...+.-|.++|++. +..|....++.+..||. + ..-++++.. +.++.+|.+.
T Consensus 109 hvlAt~PdLYp~lveln~V~slL~LLgHe---NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~vlaLLvqn 184 (536)
T KOG2734|consen 109 HVLATMPDLYPILVELNAVQSLLELLGHE---NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQVLALLVQN 184 (536)
T ss_pred HhhhcChHHHHHHHHhccHHHHHHHhcCC---CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh-ccHHHHHHHH
Confidence 45667787765555555667788888875 67899999999999992 2 245666765 5688999999
Q ss_pred HhhCcch-------HHHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhcCC-CCCCcHHHHHHHHHHHHHHh
Q 000056 2105 LHYAPAC-------REGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPS-QQETPLQQRAAAASLLGKLV 2168 (2526)
Q Consensus 2105 L~~~p~~-------~~~vL~~L~aL~s-~t~lVkqal~~GgvlyLL~LL~~s-~e~~~~~~R~~aA~lL~kM~ 2168 (2526)
+.+.-+. +.-+|.++-.|.+ .+++..++.++|.+.|||.-+|.. ..+.+.+. +.++|+=+.
T Consensus 185 veRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~Y---asEiLaill 254 (536)
T KOG2734|consen 185 VERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQY---ASEILAILL 254 (536)
T ss_pred HHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHH---HHHHHHHHh
Confidence 8865322 2336666666666 678899999999999999965542 33334444 455554444
No 104
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=67.80 E-value=15 Score=39.04 Aligned_cols=76 Identities=24% Similarity=0.223 Sum_probs=54.9
Q ss_pred cCCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc----ccccCCCC
Q 000056 134 RNSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGT 209 (2526)
Q Consensus 134 ~k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~r----~~l~~~~~ 209 (2526)
+.+---++.|++|+..|...|+.++.+++..+|+.|...+- | .+-|.+. -|+.+- .|.|.+.
T Consensus 17 ~~~l~g~~~L~l~~~~l~L~~~~~~~~~~~Wpl~~lRryG~----~-------~~~F~fE--aGRrc~tG~G~f~f~t~- 82 (100)
T PF02174_consen 17 RCGLSGPYLLCLTPDELILIDPQSGEPILEWPLRYLRRYGR----D-------DGIFSFE--AGRRCPTGEGLFWFQTP- 82 (100)
T ss_dssp CSSSEEEEEEEEESSEEEEEETTTTEEEEEEEGGGEEEEEE----E-------TTEEEEE--ESTTSTTCSEEEEEEES-
T ss_pred CCCceEEEEEEECCCEEEEecCCCCceEEEEEhHHhhhhcc----C-------CCEEEEE--ECCcCCCCCcEEEEEeC-
Confidence 34444489999999999999999999999999999996433 2 3566664 554333 6777774
Q ss_pred ChHHHHHHHHHHHh
Q 000056 210 TNSAIVSSLTKTAK 223 (2526)
Q Consensus 210 ~~~~ii~~i~~~A~ 223 (2526)
+-++|.+.|.+..+
T Consensus 83 ~a~~I~~~v~~~i~ 96 (100)
T PF02174_consen 83 DAEEIFETVERAIK 96 (100)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66677777765543
No 105
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=67.13 E-value=18 Score=39.60 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=52.2
Q ss_pred CCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCC--CccccccCCCCChH
Q 000056 135 NSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGR--KSKAFQAAPGTTNS 212 (2526)
Q Consensus 135 k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~--~~r~~l~~~~~~~~ 212 (2526)
+..|.++.|.|++.||-.+|..+++++..|+.++|. +...-+. ++.-|++.--.++ ...-|+|.|...-+
T Consensus 40 ~~~~~~v~l~vs~~gv~v~~~~~~~~l~~~~l~~Is---f~~~~~~-----~~~~F~fI~~~~~~~~~~CHvF~c~~~a~ 111 (134)
T smart00462 40 KKEPQKVILSISSRGVKLIDEDTKAVLHEHPLRRIS---FCAVGPD-----DLDVFGYIARDPGSSRFACHVFRCEKAAE 111 (134)
T ss_pred cCCCCEEEEEEECCcEEEEECCCCeEEEEccccceE---EEecCCC-----CCcEEEEEeeCCCCCeEEEEEEEcCchHH
Confidence 567789999999999999999999999999999995 4322211 2455554312222 35578888853323
Q ss_pred HHHHHHHH
Q 000056 213 AIVSSLTK 220 (2526)
Q Consensus 213 ~ii~~i~~ 220 (2526)
+|...|.+
T Consensus 112 ~i~~~i~~ 119 (134)
T smart00462 112 DIALAIGQ 119 (134)
T ss_pred HHHHHHHH
Confidence 45555543
No 106
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=65.27 E-value=6.2 Score=34.86 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=35.4
Q ss_pred cchhhhccCCCchHHHHHhhhcCCchHHHHHHHHHHHHH
Q 000056 1269 PRVKWILSSSRCLPHIAQAMLSGEPSIVEAAAALLKAVV 1307 (2526)
Q Consensus 1269 Prvkr~Ls~~~~LphlvQlLLt~~p~lve~~~~LL~~l~ 1307 (2526)
|..|+.+.+...+|+|+++|-+.++.+.+.++..|..|.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456788899999999999999999999999999998874
No 107
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=63.25 E-value=28 Score=38.23 Aligned_cols=107 Identities=11% Similarity=0.095 Sum_probs=66.1
Q ss_pred hhhhHHHHHHHHhhhhhcccccCCCcceecccCCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccC
Q 000056 103 RFRASILTELHRIRWVRLNAVAEFPVLHLRRRNSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYG 182 (2526)
Q Consensus 103 ~~Ra~lLT~l~r~r~~~~~~~~~f~~~~~~~~k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~ 182 (2526)
..|.++.-++++-.... ..-........+.+|.+|.|.|++.||-.+|+.+|.++..++.++|. +....|.
T Consensus 20 ~~g~~~v~~ai~~~~~~----~~~~~~~~~~~~~~~~~V~l~vs~~gI~v~~~~t~~~l~~~~i~~Is---~~~~~d~-- 90 (140)
T PF00640_consen 20 SRGSDVVREAIQRLKAE----KIAKSKKSKSNKKKPQKVTLNVSSDGIKVIDPDTGEVLMSHPIRRIS---FCAVGDP-- 90 (140)
T ss_dssp HHHHHHHHHHHHHHHHH----CCCSHHHHHTTTSTSEEEEEEEETTEEEEEETTTTCEEEEEEGGGEE---EEEESST--
T ss_pred chhHHHHHHHHHHHHhh----hhhhhhccccccccCeEEEEEEcCCeEEEecCccccccccCCccceE---EEEecCC--
Confidence 35777777766543110 00000111234677889999999999999999999999999999996 4443121
Q ss_pred CCCCCCcEEEeeccCCCc--cccccCCCCChHHHHHHHHH
Q 000056 183 KRSETGGFVLCPLYGRKS--KAFQAAPGTTNSAIVSSLTK 220 (2526)
Q Consensus 183 ~~~~~ggfvl~~~~g~~~--r~~l~~~~~~~~~ii~~i~~ 220 (2526)
.++.-|....-.++.+ .-|+|.+...-++|.+.|.+
T Consensus 91 --~~~~~Fafi~~~~~~~~~~CHVF~~~~~A~~i~~~i~~ 128 (140)
T PF00640_consen 91 --DDKRVFAFIARDPRSSRFYCHVFKCEDQAQEICQAIGQ 128 (140)
T ss_dssp --TETTEEEEEEEETSSSCEEEEEEEESSCHHHHHHHHHH
T ss_pred --CcceEEEEEeccCCCCccccEeeeHhhHHHHHHHHHHH
Confidence 1234444321223322 36888886545677777654
No 108
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.98 E-value=7.4e+02 Score=36.69 Aligned_cols=289 Identities=21% Similarity=0.272 Sum_probs=144.0
Q ss_pred hHHHHHHHHhh-CcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCCh
Q 000056 2097 SLLLLLQMLHY-APACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGP 2175 (2526)
Q Consensus 2097 vl~~Ll~lL~~-~p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGP 2175 (2526)
++..|+++.++ +|+.++.++.+|+++.. .+-...+ +-+.-++.+|...-.+.+..+|+.++..++.+....-+-+
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~---~~~~~~~-~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPE---TFGNTLQ-PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhh---hhccccc-hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccch
Confidence 34445555543 56788889988877663 2222222 1122344455443222233399999999999876433445
Q ss_pred HHHHHHHhhCcHHHH---HHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcc
Q 000056 2176 RVAITLARFLPDGLV---SVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQ 2252 (2526)
Q Consensus 2176 rV~~~L~KfLP~~fv---damrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~ 2252 (2526)
.......-+||..+. +.+.++-.. ....+-+.+.+++.-
T Consensus 195 ~~~~~~~~llP~~l~vl~~~i~~~d~~--------------------~a~~~l~~l~El~e~------------------ 236 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSLLNVLQEVIQDGDDD--------------------AAKSALEALIELLES------------------ 236 (1075)
T ss_pred HHHHHHHHHhHHHHHHhHhhhhccchH--------------------HHHHHHHHHHHHHhh------------------
Confidence 555555556665332 111111111 111111222221111
Q ss_pred cccccccCCCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhh
Q 000056 2253 ASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALA 2332 (2526)
Q Consensus 2253 f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~La 2332 (2526)
-|+. =+.+++.++.-.++-+.. ..+|...-.+.-.=+|++...-|.+.
T Consensus 237 -----------------------~pk~----l~~~l~~ii~~~l~Ia~n-----~~l~~~~R~~ALe~ivs~~e~Ap~~~ 284 (1075)
T KOG2171|consen 237 -----------------------EPKL----LRPHLSQIIQFSLEIAKN-----KELENSIRHLALEFLVSLSEYAPAMC 284 (1075)
T ss_pred -----------------------chHH----HHHHHHHHHHHHHHHhhc-----ccccHHHHHHHHHHHHHHHHhhHHHh
Confidence 1110 024566666555554443 34444444455556778888888888
Q ss_pred hhhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCC---------------C--------------CC
Q 000056 2333 DHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSA---------------Q--------------PV 2383 (2526)
Q Consensus 2333 D~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~--------------~~ 2383 (2526)
..-+. ++++|+..+-..--. .+-..+....|...+++..+. + ..
T Consensus 285 k~~~~--~~~~lv~~~l~~mte-----~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l 357 (1075)
T KOG2171|consen 285 KKLAL--LGHTLVPVLLAMMTE-----EEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAML 357 (1075)
T ss_pred hhchh--hhccHHHHHHHhcCC-----cccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHh
Confidence 88887 555555544432110 000001111122222221111 1 11
Q ss_pred CChhhhhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhhccCchH--hHHHHHHHHHhcCCccchHHHHHHH
Q 000056 2384 QTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGSI--LALETLKRVVVAGNRARDALVAQGL 2461 (2526)
Q Consensus 2384 ~~~~~~~~~s~l~vlh~ls~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~~--la~etL~r~~~~~~r~~~~Lv~qaL 2461 (2526)
+.+...-|+++|+.|-+++. -|-+.|... =|.|++..++..+.+--.+ -||-++.-|=.. -. +.++-.-
T Consensus 358 ~S~~w~~R~AaL~Als~i~E--Gc~~~m~~~---l~~Il~~Vl~~l~DphprVr~AA~naigQ~std---l~-p~iqk~~ 428 (1075)
T KOG2171|consen 358 QSTEWKERHAALLALSVIAE--GCSDVMIGN---LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTD---LQ-PEIQKKH 428 (1075)
T ss_pred cCCCHHHHHHHHHHHHHHHc--ccHHHHHHH---HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhh---hc-HHHHHHH
Confidence 33334567888888887664 488888872 2677888888877643332 777777555331 11 2233233
Q ss_pred hhCcHHHHHHhccc
Q 000056 2462 KVGLVDVLLGLLDW 2475 (2526)
Q Consensus 2462 ~~~lv~~LL~lLd~ 2475 (2526)
..-++|-|+..||+
T Consensus 429 ~e~l~~aL~~~ld~ 442 (1075)
T KOG2171|consen 429 HERLPPALIALLDS 442 (1075)
T ss_pred HHhccHHHHHHhcc
Confidence 33466677777764
No 109
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=61.52 E-value=2e+02 Score=39.67 Aligned_cols=255 Identities=16% Similarity=0.186 Sum_probs=125.4
Q ss_pred HHhhCcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC-CCCChHHHHHHH
Q 000056 2104 MLHYAPACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ-PMHGPRVAITLA 2182 (2526)
Q Consensus 2104 lL~~~p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aD-klhGPrV~~~L~ 2182 (2526)
....=|++...+++.++.|+.. ...++|.+|.+-|-.++.| +-|-+||.-+|.
T Consensus 49 ffk~FP~l~~~Ai~a~~DLcED--------------------------ed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~ 102 (556)
T PF05918_consen 49 FFKHFPDLQEEAINAQLDLCED--------------------------EDVQIRKQAIKGLPQLCKDNPEHVSKVADVLV 102 (556)
T ss_dssp HHCC-GGGHHHHHHHHHHHHT---------------------------SSHHHHHHHHHHGGGG--T--T-HHHHHHHHH
T ss_pred HHhhChhhHHHHHHHHHHHHhc--------------------------ccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHH
Confidence 3445577777788777777642 2455666666666666553 455566666666
Q ss_pred hhCcH-----------HHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCc
Q 000056 2183 RFLPD-----------GLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPE 2251 (2526)
Q Consensus 2183 KfLP~-----------~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe 2251 (2526)
++|-. .++.-++-+|..+.-.+|++..-++. =++.+|+++..+|..-...+-..-.. |. +-.|
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~--~de~~Re~~lkFl~~kl~~l~~~~~~-p~---~E~e 176 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKS--GDEQVRERALKFLREKLKPLKPELLT-PQ---KEME 176 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---H--S-HHHHHHHHHHHHHHGGGS-TTTS-------HHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhCcHHHhh-ch---HHHH
Confidence 66643 77888888887776667776652221 14668998887774322111000000 00 0001
Q ss_pred cccc---ccccCCCcEEeee----eehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHH
Q 000056 2252 QASA---QQEMRDEPQVGGI----YVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSL 2324 (2526)
Q Consensus 2252 ~f~~---y~~l~~El~VGGV----YlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~L 2324 (2526)
.|.. -..+.+ |-|+ ++.++-.=+-|..-.|-....+|++-+.+.+.-..+ -+..|+ +.+-.-+-|+
T Consensus 177 ~~i~~~ikkvL~D---VTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~-f~~sD~---e~Idrli~C~ 249 (556)
T PF05918_consen 177 EFIVDEIKKVLQD---VTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQP-FDPSDP---ESIDRLISCL 249 (556)
T ss_dssp HHHHHHHHHHCTT-----HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS----SSSH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---ccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCC-CCCcCH---HHHHHHHHHH
Confidence 1110 011222 2222 222333334444455888888899988887754321 122233 5667778888
Q ss_pred HhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhCC
Q 000056 2325 LRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAAS 2404 (2526)
Q Consensus 2325 L~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~s 2404 (2526)
.++-|-.+-.+.+ .+|+..|..+--| .+.+. ++..+..-|+++-++|..
T Consensus 250 ~~Alp~fs~~v~S----skfv~y~~~kvlP---~l~~l------------------------~e~~kl~lLk~lAE~s~~ 298 (556)
T PF05918_consen 250 RQALPFFSRGVSS----SKFVNYMCEKVLP---KLSDL------------------------PEDRKLDLLKLLAELSPF 298 (556)
T ss_dssp HHHGGG-BTTB------HHHHHHHHHHTCC---CTT-----------------------------HHHHHHHHHHHHHTT
T ss_pred HHhhHHhcCCCCh----HHHHHHHHHHhcC---ChhhC------------------------ChHHHHHHHHHHHHHcCC
Confidence 8888887666555 7888887765432 11111 234567777777777766
Q ss_pred hhHHHHHhhcCCCCCcchHHHHHHhhcc
Q 000056 2405 TTCAEAMAATSTGTPQVVPILMKAIGWQ 2432 (2526)
Q Consensus 2405 ~~Cv~ala~~~~~~~~~v~~l~~a~~~~ 2432 (2526)
..=.+ ..+|. |.+...|++-|...
T Consensus 299 ~~~~d---~~~~L-~~i~~~L~~ymP~~ 322 (556)
T PF05918_consen 299 CGAQD---ARQLL-PSIFQLLKKYMPSK 322 (556)
T ss_dssp ----T---HHHHH-HHHHHHHHTTS---
T ss_pred CCccc---HHHHH-HHHHHHHHHhCCCC
Confidence 44323 22231 44556666666654
No 110
>PF13446 RPT: A repeated domain in UCH-protein
Probab=61.35 E-value=13 Score=36.04 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=35.0
Q ss_pred CChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhh
Q 000056 1500 LSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1500 ~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLs 1579 (2526)
|+.++||++||+++ +.+++.|-.+|+.... -.| .......+|..++.
T Consensus 2 ~~~~~Ay~~Lgi~~-------------------------~~~Dd~Ii~~f~~~~~-~~P-------~~~~~~r~AL~~Ia 48 (62)
T PF13446_consen 2 MDVEEAYEILGIDE-------------------------DTDDDFIISAFQSKVN-DDP-------SQKDTLREALRVIA 48 (62)
T ss_pred CCHHHHHHHhCcCC-------------------------CCCHHHHHHHHHHHHH-cCh-------HhHHHHHHHHHHHH
Confidence 78899999999973 6788999999997665 223 23345566666666
Q ss_pred c
Q 000056 1580 A 1580 (2526)
Q Consensus 1580 d 1580 (2526)
+
T Consensus 49 ~ 49 (62)
T PF13446_consen 49 E 49 (62)
T ss_pred H
Confidence 5
No 111
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=58.19 E-value=36 Score=43.02 Aligned_cols=133 Identities=18% Similarity=0.126 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhhCccchhhccccCChhhhhcccC----CCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHH
Q 000056 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFS----VPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLL 2102 (2526)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~----~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll 2102 (2526)
.+++++|.++++ .+.....+-..+.+..|+..|. .......+++=.++-++=.||.+.++++.+.+.. +++.|.
T Consensus 168 ~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~-~i~~L~ 245 (312)
T PF03224_consen 168 YIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY-LIPLLA 245 (312)
T ss_dssp HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc-hHHHHH
Confidence 677889999984 5566666666777778888872 1112223344557778889999999999999877 888888
Q ss_pred HHHhhCc--chHHHHHHHHHHhhcchH--HHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHH
Q 000056 2103 QMLHYAP--ACREGVLHVLYALASTPE--LAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASL 2163 (2526)
Q Consensus 2103 ~lL~~~p--~~~~~vL~~L~aL~s~t~--lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~l 2163 (2526)
..++..+ -.+..++-+|..|++.+. ++.+++.+|+. -+|+.|..+ ....++..+....+
T Consensus 246 ~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l-~~l~~L~~r-k~~Dedl~edl~~L 308 (312)
T PF03224_consen 246 DILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLL-KTLQNLSER-KWSDEDLTEDLEFL 308 (312)
T ss_dssp HHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HH-HHHHHHHSS---SSHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHH-HHHHHHhcC-CCCCHHHHHHHHHH
Confidence 8887643 345568899999998776 88888887654 556666554 34556666555433
No 112
>PF05536 Neurochondrin: Neurochondrin
Probab=55.03 E-value=94 Score=42.63 Aligned_cols=94 Identities=27% Similarity=0.304 Sum_probs=71.4
Q ss_pred CChhhHHHHHHHHhcCChhHHHHHHhhc---chHHHHHHHHhhCcc--hHHHHHHHHHHhhcchHHHHHHHHcCCHhhhH
Q 000056 2068 SNIPQLCLNVLSLLTTCASCLEAMVADG---SSLLLLLQMLHYAPA--CREGVLHVLYALASTPELAWAAAKHGGVVYIL 2142 (2526)
Q Consensus 2068 ~~vq~~aL~VL~~ls~n~~CVeaiA~~~---~vl~~Ll~lL~~~p~--~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL 2142 (2526)
......++.||+.++. .+.++... ..++.|+.++....+ ....++++|++++++++-.+..++.|++.-|.
T Consensus 71 ~~~~~LavsvL~~f~~----~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ 146 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCR----DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALC 146 (543)
T ss_pred HHHHHHHHHHHHHHcC----ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHH
Confidence 3467899999999987 44565544 346677777765443 45679999999999999999999999999999
Q ss_pred HhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000056 2143 ELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2526)
Q Consensus 2143 ~LL~~s~e~~~~~~R~~aA~lL~kM~aD 2170 (2526)
+++-+ .+...+.+..+|-.+++.
T Consensus 147 ei~~~-----~~~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 147 EIIPN-----QSFQMEIALNLLLNLLSR 169 (543)
T ss_pred HHHHh-----CcchHHHHHHHHHHHHHh
Confidence 98876 345566777777776654
No 113
>PF08416 PTB: Phosphotyrosine-binding domain; InterPro: IPR013625 The phosphotyrosine-binding domain (PTB, also phosphotyrosine-interaction or PI domain) of tensin tends to be found at the C terminus of a protein. Tensin is a multi-domain protein that binds to actin filaments and functions as a focal-adhesion molecule (focal adhesions are regions of plasma membrane through which cells attach to the extracellular matrix). Human tensin has actin-binding sites, an SH2 (IPR000980 from INTERPRO) domain and a region similar to the tumour suppressor PTEN []. The PTB domain interacts with the cytoplasmic tails of beta integrin by binding to an NPXY motif []. ; GO: 0005515 protein binding; PDB: 3HQC_A 2DKQ_A 2LOZ_A 2CY5_A 2CY4_A 2GJY_A 1WVH_A.
Probab=54.85 E-value=23 Score=39.58 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=57.2
Q ss_pred cCCccc-ceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCC--cEEEeeccCCCccccccCCC-C
Q 000056 134 RNSEWV-PYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETG--GFVLCPLYGRKSKAFQAAPG-T 209 (2526)
Q Consensus 134 ~k~~w~-p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~g--gfvl~~~~g~~~r~~l~~~~-~ 209 (2526)
-+.-|. .+.|+|++.||..+|..++..+=+|+...|...+..+ + ...++. |||.-.-..+..-.|+|.|. .
T Consensus 34 ~~~~w~q~~~lkV~~~~v~L~D~~~k~~le~yPl~~I~~c~~~~--~---~~~~~~il~fV~r~~~~~~~~~H~Fqc~ev 108 (131)
T PF08416_consen 34 KGRIWPQEMHLKVSDQGVTLTDIETKEFLEHYPLSSIQFCGADP--D---SRRYNSILGFVVRKPGSSKPNVHLFQCEEV 108 (131)
T ss_dssp SS-SS-EEEEEEEETTEEEEEESSTSSECEEEECCCEEEEEEET--T---TTEECBEEEEEEEETTCCCEEEEEEEETCT
T ss_pred CCCcccEEEEEEEeCCeEEEEECcccchhhhCCHhHeeeccccC--C---CCccceEEEEEEecCCCCCCcEEEEEcCCC
Confidence 467788 8889999999999999999988999999998544432 1 111234 44432112233448999863 4
Q ss_pred ChHHHHHHHHHHHhhh
Q 000056 210 TNSAIVSSLTKTAKSM 225 (2526)
Q Consensus 210 ~~~~ii~~i~~~A~~~ 225 (2526)
..+.+.+.|+.+..++
T Consensus 109 ~a~~~~~~I~~~v~~~ 124 (131)
T PF08416_consen 109 DAEQPAEDIVSAVSKV 124 (131)
T ss_dssp CTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5566777777766553
No 114
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=49.33 E-value=18 Score=31.06 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=33.0
Q ss_pred hhhhccCCCchHHHHHhhhcCCchHHHHHHHHHHHHH
Q 000056 1271 VKWILSSSRCLPHIAQAMLSGEPSIVEAAAALLKAVV 1307 (2526)
Q Consensus 1271 vkr~Ls~~~~LphlvQlLLt~~p~lve~~~~LL~~l~ 1307 (2526)
.|+.+.+..++|+|+++|-+.++.+++.++..|..|.
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677888899999999999999999999999998874
No 115
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=46.98 E-value=20 Score=40.92 Aligned_cols=43 Identities=35% Similarity=0.660 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCC--------chHHHHHHHHHHHHHhhccc
Q 000056 1540 IDEEKLKRQYRKLAMKYHPDKNP--------EGREKFLAVQKAYERLQATM 1582 (2526)
Q Consensus 1540 a~e~~IKkAYRkLa~k~HPDKnp--------~a~ekF~~I~~AYEvLsd~~ 1582 (2526)
.+...++.-|.--.++.|||+.. -|.+.-..+|+||..|.||.
T Consensus 22 ~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL 72 (168)
T KOG3192|consen 22 IDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPL 72 (168)
T ss_pred CCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHH
Confidence 34555665677788899999842 26778999999999999975
No 116
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=45.43 E-value=6.2e+02 Score=33.84 Aligned_cols=291 Identities=18% Similarity=0.244 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCCh------hhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKL------LPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLL 2099 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L------~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~ 2099 (2526)
+..+|+-+--.|++++.-.+.+-...+. ...+++| .+.+.-+....-.|++.++.+..|.-......-...
T Consensus 83 v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll---~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~ 159 (442)
T KOG2759|consen 83 VQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL---NRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKG 159 (442)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH---hcCChHHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 4566777778888887755544322111 1222333 234566778788999999999999876644333445
Q ss_pred HHHHHHhh--CcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHH-------------HHH--
Q 000056 2100 LLLQMLHY--APACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAA-------------AAS-- 2162 (2526)
Q Consensus 2100 ~Ll~lL~~--~p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~-------------aA~-- 2162 (2526)
.|...+.+ +++.+..+.++|..|.-.++.--......|+..++.++.+.. .+.|..-+ +|+
T Consensus 160 ~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~--~~~QlQYqsifciWlLtFn~~~ae~~ 237 (442)
T KOG2759|consen 160 FLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTK--CGFQLQYQSIFCIWLLTFNPHAAEKL 237 (442)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccC--cchhHHHHHHHHHHHhhcCHHHHHHH
Confidence 55555544 457777777788888876665555555677777776663221 11221111 122
Q ss_pred -------HHHHHhcCCCCChHH-HHHHH---hhCcH--------HHHHHHhcCchhhHHHhhcccCcC-cccccC-HHHH
Q 000056 2163 -------LLGKLVGQPMHGPRV-AITLA---RFLPD--------GLVSVIRDGPGEAVVSALEQTTET-PELVWT-PAMA 2221 (2526)
Q Consensus 2163 -------lL~kM~aDklhGPrV-~~~L~---KfLP~--------~fvdamrdsP~~a~v~~fds~~En-PELIWn-~~mR 2221 (2526)
.|.++..+. .-.|| |++|+ .+++. ....+|.....-.+++.++..--. +||+=+ +..+
T Consensus 238 ~~~~li~~L~~Ivk~~-~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~ 316 (442)
T KOG2759|consen 238 KRFDLIQDLSDIVKES-TKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLT 316 (442)
T ss_pred hhccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 222222110 11233 22222 22222 123334333322344555443322 333211 1245
Q ss_pred HHHHHHHHHHH--HHHHHHHhcCCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChHHHH---HHHHHHHH
Q 000056 2222 ASLSAQISTMA--SDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFL---EGLLDQYL 2296 (2526)
Q Consensus 2222 ~~v~~~i~~~~--~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL---~~Ll~~~~ 2296 (2526)
+++.+.++.+. .+|.++...|. .+|+++-....+ |. -|-.+|- -+|+...+
T Consensus 317 e~L~~svq~LsSFDeY~sEl~sG~-L~WSP~Hk~e~F--W~---------------------eNa~rlnennyellkiL~ 372 (442)
T KOG2759|consen 317 EKLKNSVQDLSSFDEYKSELRSGR-LEWSPVHKSEKF--WR---------------------ENADRLNENNYELLKILI 372 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHhCC-cCCCccccccch--HH---------------------HhHHHHhhccHHHHHHHH
Confidence 56666666654 34555555544 889944322211 00 0122222 25777777
Q ss_pred HHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhc
Q 000056 2297 SSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEG 2352 (2526)
Q Consensus 2297 ~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~ 2352 (2526)
+.+...+ |+-.+-...-=|-.+.|+.|---+-|-.+|.=.+++++|.|++
T Consensus 373 ~lLe~s~------Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d 422 (442)
T KOG2759|consen 373 KLLETSN------DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHED 422 (442)
T ss_pred HHHhcCC------CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCC
Confidence 7777642 4444555666778899999999999999999999999999986
No 117
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.40 E-value=1.1e+02 Score=42.13 Aligned_cols=88 Identities=24% Similarity=0.381 Sum_probs=68.4
Q ss_pred CCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhh
Q 000056 2310 DPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQER 2389 (2526)
Q Consensus 2310 d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2389 (2526)
|+++-..+..|+|-||.++|+= -.-|++-+++.|-+.++ .+.+.
T Consensus 228 ~~eVRk~vC~alv~Llevr~dk-----l~phl~~IveyML~~tq-------------------------------d~dE~ 271 (885)
T KOG2023|consen 228 DPEVRKNVCRALVFLLEVRPDK-----LVPHLDNIVEYMLQRTQ-------------------------------DVDEN 271 (885)
T ss_pred CHHHHHHHHHHHHHHHHhcHHh-----cccchHHHHHHHHHHcc-------------------------------Ccchh
Confidence 4567778999999999999963 23477788888887652 23345
Q ss_pred hhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhhccCchH
Q 000056 2390 VRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGSI 2436 (2526)
Q Consensus 2390 ~~~s~l~vlh~ls~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~~ 2436 (2526)
|.+-|=...|.+|.++.|-+.++.- -+.+||.|...|.-....+
T Consensus 272 VALEACEFwla~aeqpi~~~~L~p~---l~kliPvLl~~M~Ysd~D~ 315 (885)
T KOG2023|consen 272 VALEACEFWLALAEQPICKEVLQPY---LDKLIPVLLSGMVYSDDDI 315 (885)
T ss_pred HHHHHHHHHHHHhcCcCcHHHHHHH---HHHHHHHHHccCccccccH
Confidence 7788889999999999999999873 2567999999998655433
No 118
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=43.29 E-value=69 Score=34.78 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=52.7
Q ss_pred ccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCChHH
Q 000056 138 WVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTNSA 213 (2526)
Q Consensus 138 w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~r----~~l~~~~~~~~~ 213 (2526)
--++.|++|+.+|..+|+.+..++.+.+|+.|...|- | .+-|-+. -|+.+- .|-|.+. +.++
T Consensus 20 ~G~y~L~lt~~~l~L~~~~~~~~~~~wpl~~lRRyG~----~-------~~~FsfE--aGRrc~tG~G~f~f~t~-~~~~ 85 (104)
T cd00824 20 LGSYRLCLTSKELTLVKLGSRVALVVWPLMFLRRYGY----D-------SNLFSFE--AGRRCVTGEGIFTFQTD-RAEE 85 (104)
T ss_pred ceeEEEEECCCEEEEEecCCCceEEEeehHHeeeccc----C-------CCEEEEE--ccCcCCCCCCEEEEEcC-CHHH
Confidence 3489999999999999998889999999999985332 2 2445443 554433 6777763 6778
Q ss_pred HHHHHHHHHhh
Q 000056 214 IVSSLTKTAKS 224 (2526)
Q Consensus 214 ii~~i~~~A~~ 224 (2526)
|.+.|.++.+.
T Consensus 86 I~~~v~~~i~~ 96 (104)
T cd00824 86 IFQNVHETILA 96 (104)
T ss_pred HHHHHHHHHHH
Confidence 88888766544
No 119
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.57 E-value=89 Score=41.26 Aligned_cols=68 Identities=21% Similarity=0.265 Sum_probs=56.5
Q ss_pred hcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhCCh
Q 000056 2326 RVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAAST 2405 (2526)
Q Consensus 2326 ~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~s~ 2405 (2526)
.--..+.-.+...|++|++...+..++-+ .-|+.+|-.||-..
T Consensus 373 SFD~glr~KMv~~GllP~l~~ll~~d~~~-------------------------------------~iA~~~lYh~S~dD 415 (791)
T KOG1222|consen 373 SFDSGLRPKMVNGGLLPHLASLLDSDTKH-------------------------------------GIALNMLYHLSCDD 415 (791)
T ss_pred cccccccHHHhhccchHHHHHHhCCcccc-------------------------------------hhhhhhhhhhccCc
Confidence 34677788889999999999999875421 36888999999988
Q ss_pred hHHHHHhhcCCCCCcchHHHHHHhhccCch
Q 000056 2406 TCAEAMAATSTGTPQVVPILMKAIGWQGGS 2435 (2526)
Q Consensus 2406 ~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~ 2435 (2526)
-.-.-+|.||| |+.+||.+-.+.++
T Consensus 416 ~~K~MfayTdc-----i~~lmk~v~~~~~~ 440 (791)
T KOG1222|consen 416 DAKAMFAYTDC-----IKLLMKDVLSGTGS 440 (791)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHhcCCc
Confidence 88888999999 99999999887654
No 120
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=39.34 E-value=41 Score=41.80 Aligned_cols=76 Identities=13% Similarity=0.098 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhhcccCCCCChhHHHHHHhhcCCHHHHHHHHHHHHH-HHhhhhcHHHHHHhCCchHHHHHHHhhhh
Q 000056 1073 CARAMAIVYEQHYTTIGPFEGTAHITVLLDRTDDRALRHRLLLLLKV-LMKVLANIEACVLVGGCVLAVDLLTVVHE 1148 (2526)
Q Consensus 1073 cL~am~ivY~r~~~~ig~f~~~~y~~~Ll~~~~d~~~R~~Lll~~~~-L~~~~~N~~~~v~~~G~~llvdLltlah~ 1148 (2526)
.|+.++.+...+-...+.-.++.-++.+|+.+.++.+....+..+.. |+.++.|.+.|-..+|+..++.++...+.
T Consensus 114 vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~ 190 (257)
T PF08045_consen 114 VLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKST 190 (257)
T ss_pred HHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccc
Confidence 56667776666655556666799999999888888888877766655 67999999999999999999999965443
No 121
>PF05536 Neurochondrin: Neurochondrin
Probab=39.13 E-value=1.2e+02 Score=41.78 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=84.2
Q ss_pred HHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhhCcchHHH
Q 000056 2035 NILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHYAPACREG 2114 (2526)
Q Consensus 2035 nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~~p~~~~~ 2114 (2526)
..+..-|+++..-.--.++|.|.+++... +...+..-|+++|..++++.+..+++.+.+ .++.|...+...+-..+.
T Consensus 82 ~~f~~~~~~a~~~~~~~~IP~Lle~l~~~--s~~~~v~dalqcL~~Ias~~~G~~aLl~~g-~v~~L~ei~~~~~~~~E~ 158 (543)
T PF05536_consen 82 AAFCRDPELASSPQMVSRIPLLLEILSSS--SDLETVDDALQCLLAIASSPEGAKALLESG-AVPALCEIIPNQSFQMEI 158 (543)
T ss_pred HHHcCChhhhcCHHHHHHHHHHHHHHHcC--CchhHHHHHHHHHHHHHcCcHhHHHHHhcC-CHHHHHHHHHhCcchHHH
Confidence 34444666655433336778888888764 224788999999999999999999999865 678888888887777888
Q ss_pred HHHHHHHhhcchH-HHHHHHHc---CCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000056 2115 VLHVLYALASTPE-LAWAAAKH---GGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2526)
Q Consensus 2115 vL~~L~aL~s~t~-lVkqal~~---GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aD 2170 (2526)
++++|..+++... -.+..-.. ..+.++=..|... .-..|..+...|+.+...
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~----~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF----HGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh----ccchHHHHHHHHHHhcCc
Confidence 9999988886432 11111111 1222333344432 234566677777777653
No 122
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=38.16 E-value=65 Score=28.45 Aligned_cols=39 Identities=31% Similarity=0.393 Sum_probs=33.0
Q ss_pred hHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHh
Q 000056 2126 PELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLV 2168 (2526)
Q Consensus 2126 t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~ 2168 (2526)
++-.+..++.||+.-|+++|.. .++.+|..++-.|+-|+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~----~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKS----PDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTS----SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcC----CCHHHHHHHHHHHHHHh
Confidence 5667788999999999999984 37899999999998775
No 123
>KOG1862 consensus GYF domain containing proteins [General function prediction only]
Probab=37.70 E-value=34 Score=47.95 Aligned_cols=46 Identities=11% Similarity=0.260 Sum_probs=39.2
Q ss_pred CCcceeEeecCCCcccccccHHHHHHHHhcCCcCcCCceecccCcc
Q 000056 1169 EPFKEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLD 1214 (2526)
Q Consensus 1169 ~~~KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~ 1214 (2526)
..++.|||.+.+|+.+|||+..+|...+.+|....+..+|..--..
T Consensus 201 ~~d~~~~Y~DP~g~iqGPf~~~~v~~W~~~GyF~~~l~vr~~e~~~ 246 (673)
T KOG1862|consen 201 DEELSWLYKDPQGQIQGPFSASDVLQWYEAGYFPDDLQVRLGENPE 246 (673)
T ss_pred CcceeEEeeCCCCcccCCchHHHHHHHHhcCccCCCceeeeccCCc
Confidence 4578999999999999999999999999999998887776533333
No 124
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=36.51 E-value=2.9e+02 Score=35.12 Aligned_cols=97 Identities=15% Similarity=0.023 Sum_probs=69.6
Q ss_pred ehhhhhhhhhhccChHHHHHHHhhcchHHHHHHhh------ccccchhHHHHHHHHHHHhhCCHHHHHHHHHhccHHHHH
Q 000056 1699 VTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCT------ELELVPGAVDAALQTIAHVSVSSELQDALLKAGALWFLL 1772 (2526)
Q Consensus 1699 ~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l------~l~~~~~l~~aALe~v~~~a~~~elq~~i~~~GVLw~LL 1772 (2526)
...+++|++.+.+-+..|..+.+ .+.+.-+..++ .-.....++..++=|+..++=+++....+.+.+++..|+
T Consensus 167 ~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~ 245 (312)
T PF03224_consen 167 QYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLA 245 (312)
T ss_dssp -HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHH
Confidence 36778999999999999999988 55566666666 223456788899999999999999999999999555555
Q ss_pred HHhhcCCCcccccCccccccccccHHHHHHHHHHHHHHHHHHhhC
Q 000056 1773 PLLLQYDSTAEKSDTNESHGVGASVQIAKNMHAVRAAQALSRLSG 1817 (2526)
Q Consensus 1773 ~lLf~YD~Tlees~le~~~~~~~~~qivkn~lAk~a~~aL~~L~g 1817 (2526)
.++ +...||..-+.++-.+..|..
T Consensus 246 ~i~---------------------~~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 246 DIL---------------------KDSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHH---------------------HH--SHHHHHHHHHHHHHTTS
T ss_pred HHH---------------------HhcccchHHHHHHHHHHHHHh
Confidence 555 222345555666666666643
No 125
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=36.35 E-value=71 Score=36.89 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhcHHHHHHhhccchhHHHHHHhhccCCcchHHHHHHHHHHHh
Q 000056 498 TVMGFVACLRRLLTSRTAASHVMSFPAAVGRIMGLLRNGSEGVAAEAAGLIAILI 552 (2526)
Q Consensus 498 ~~~~~~~aLrRL~as~~gf~~~~~~p~~~~~v~~~L~~~~~~v~~~a~~~l~~l~ 552 (2526)
.....+.|||=|+-++.|+.++..-|..+..|+.+|...+..+--.|+++|.++.
T Consensus 132 ~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 132 IEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4456799999999999999999999999999999999999999999999998863
No 126
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=36.18 E-value=82 Score=34.03 Aligned_cols=83 Identities=13% Similarity=0.097 Sum_probs=55.3
Q ss_pred CCcceecccCCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc----
Q 000056 126 FPVLHLRRRNSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK---- 201 (2526)
Q Consensus 126 f~~~~~~~~k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~r---- 201 (2526)
|.|.++...+..-..+.|+||+..|...+++..- .+.+|+.+...|- | .+-|-+. -|+.+-
T Consensus 8 F~V~~~~~~~~~~g~g~L~vt~~~L~l~~~~~~~--~~WPl~~LRRYG~----d-------~~~FsFE--AGRRC~tGeG 72 (102)
T cd01202 8 FRVINVDDDGNELGSGWLELTRTELTLYISGKEP--VVWPLLCLRRYGY----N-------SDLFSFE--SGRRCQTGEG 72 (102)
T ss_pred EEEEEECCCCCeeeeEEEEecceEEEEEcCCCCE--EEccHHHhHhhcc----C-------CCEEEEE--ccCcCCCCCC
Confidence 4455555445566789999999999999876544 4558888875332 3 2444442 443332
Q ss_pred ccccCCCCChHHHHHHHHHHHhh
Q 000056 202 AFQAAPGTTNSAIVSSLTKTAKS 224 (2526)
Q Consensus 202 ~~l~~~~~~~~~ii~~i~~~A~~ 224 (2526)
+|.|.+. +.++|.+.+.+.-+.
T Consensus 73 ~f~F~t~-~~~~if~~v~~~I~~ 94 (102)
T cd01202 73 IFAFRCK-RAEELFNLLQSYIQE 94 (102)
T ss_pred EEEEEcC-CHHHHHHHHHHHHHc
Confidence 7888884 888899888766543
No 127
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=36.04 E-value=39 Score=35.70 Aligned_cols=77 Identities=14% Similarity=0.348 Sum_probs=0.0
Q ss_pred cccceEEEEeecCeeee---------eCCCC-cccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeec
Q 000056 33 RGRYKRILCISNATIIT---------LDPNT-LAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSS 102 (2526)
Q Consensus 33 rgkYkRif~Ig~~~i~T---------~nP~t-levTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~K~~~mkFss 102 (2526)
++|++|++|++...=-. .|++. +.+.-+|+. .|+..|.-. .+.....+|.|++.| ...=.-=|+
T Consensus 1 k~kK~r~Lclsv~~~~~~~v~l~k~K~~~~g~f~i~ktW~L-~eL~~I~~~-~~~~~~~~F~l~~~k----~y~W~a~s~ 74 (91)
T PF15277_consen 1 KKKKPRYLCLSVTNSPRIQVRLHKVKQNDNGSFQIGKTWDL-DELKAIDGI-NPDKDTPEFDLTFDK----PYYWEASSA 74 (91)
T ss_dssp GGEEEEEEEEEEETTETTEEEEEEEEE-CCS-EEEEEEEEG-GG--EEEE--SSS--TTEEEEESSS----EEEEEESSH
T ss_pred CCcccEEEEEEEecCCceEEEEEEEEecCCCcEEEeeEEeh-hhceeeeee-cCCCCCcCEEEEECC----CcEEEeCCH
Q ss_pred hhhhHHHHHHHHh
Q 000056 103 RFRASILTELHRI 115 (2526)
Q Consensus 103 ~~Ra~lLT~l~r~ 115 (2526)
+.|...++.|.++
T Consensus 75 ~Ek~~Fi~~L~k~ 87 (91)
T PF15277_consen 75 KEKNTFIRSLWKL 87 (91)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 128
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=35.76 E-value=1.1e+03 Score=30.69 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=50.0
Q ss_pred hHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhhCcchH-----HHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhc
Q 000056 2072 QLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHYAPACR-----EGVLHVLYALASTPELAWAAAKHGGVVYILELLL 2146 (2526)
Q Consensus 2072 ~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~~p~~~-----~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~ 2146 (2526)
..|-.+-...+.|.+=++++... .+.++|+.+|....-.+ =.+.+..+.-...|.+++..+..|.+--|-++|.
T Consensus 346 EaCWTiSNITAGnteqiqavid~-nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~ 424 (526)
T COG5064 346 EACWTISNITAGNTEQIQAVIDA-NLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD 424 (526)
T ss_pred hhheeecccccCCHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHh
Confidence 34444445556788888887753 47788887775432111 1244555555568899999999999888888775
Q ss_pred CC
Q 000056 2147 PS 2148 (2526)
Q Consensus 2147 ~s 2148 (2526)
-.
T Consensus 425 ~~ 426 (526)
T COG5064 425 VV 426 (526)
T ss_pred cc
Confidence 43
No 129
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=35.33 E-value=9.9e+02 Score=32.28 Aligned_cols=170 Identities=15% Similarity=0.171 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCC
Q 000056 2287 FLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGN 2366 (2526)
Q Consensus 2287 FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~ 2366 (2526)
++.-+++-+...+...+ +.+......+.+-.||+.. .....+-..+.++.|+..|.....
T Consensus 140 ~l~~~~~~l~~~l~~~~------~~~~~~~~v~~L~~LL~~~-~~R~~f~~~~~v~~L~~~L~~~~~------------- 199 (429)
T cd00256 140 DLDYYFNWLKEQLNNIT------NNDYVQTAARCLQMLLRVD-EYRFAFVLADGVPTLVKLLSNATL------------- 199 (429)
T ss_pred HHHHHHHHHHHHhhccC------CcchHHHHHHHHHHHhCCc-hHHHHHHHccCHHHHHHHHhhccc-------------
Confidence 55555555555555432 1222334445555556554 444555556679999998874210
Q ss_pred CccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhhccCc--hH-hHHHHHH
Q 000056 2367 SEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGG--SI-LALETLK 2443 (2526)
Q Consensus 2367 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~--~~-la~etL~ 2443 (2526)
.-++.=.++.++=.||.++.+++.+...+. ||.|...++..+- .+ +++-+|+
T Consensus 200 --------------------~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~-----i~~l~~i~k~s~KEKvvRv~l~~l~ 254 (429)
T cd00256 200 --------------------GFQLQYQSIFCIWLLTFNPHAAEVLKRLSL-----IQDLSDILKESTKEKVIRIVLAIFR 254 (429)
T ss_pred --------------------cHHHHHHHHHHHHHHhccHHHHHhhccccH-----HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 012445788899999999999999977544 8988888877542 23 9999999
Q ss_pred HHHhcCCcc--chHHHHHHHhhCcHHHHHHhcccccCCCCCCccccccccccccchhHHHHHHHHHHHHHHhhhcccc
Q 000056 2444 RVVVAGNRA--RDALVAQGLKVGLVDVLLGLLDWRAGGRNGLSSQMKWNESEASIGRVLAIEVRMMSIMVAFSLNALT 2519 (2526)
Q Consensus 2444 r~~~~~~r~--~~~Lv~qaL~~~lv~~LL~lLd~~~~~~~g~~~~~~~~~~~a~~~~v~a~~v~~~~~~~~~~~~~~~ 2519 (2526)
-+++++... .+....+++.+|+.+ +|+.|..| +|.+.+ +-.++..|+.+.+=....+|
T Consensus 255 Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~r-----------k~~Ded------L~edl~~L~e~L~~~~k~lt 314 (429)
T cd00256 255 NLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQR-----------KYDDED------LTDDLKFLTEELKNSVQDLS 314 (429)
T ss_pred HHhhcccccchhhhHHHHHHHcChHH-HHHHHhcC-----------CCCcHH------HHHHHHHHHHHHHHHHHHcC
Confidence 999964211 345778999999987 55666322 443333 34556666666665555554
No 130
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.07 E-value=33 Score=40.01 Aligned_cols=42 Identities=36% Similarity=0.583 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHHHHHhhccc
Q 000056 1541 DEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKAYERLQATM 1582 (2526)
Q Consensus 1541 ~e~~IKkAYRkLa~k~HPDKnp~--------a~ekF~~I~~AYEvLsd~~ 1582 (2526)
+.+.++..|+.+.++||||+... +-+.+..++.||..|.++.
T Consensus 16 ~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l 65 (174)
T COG1076 16 DLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPL 65 (174)
T ss_pred HHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHH
Confidence 44578889999999999999742 2357888999999999864
No 131
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.73 E-value=2.9e+02 Score=35.96 Aligned_cols=68 Identities=24% Similarity=0.256 Sum_probs=55.7
Q ss_pred cchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHh
Q 000056 2109 PACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLAR 2183 (2526)
Q Consensus 2109 p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~K 2183 (2526)
++-...+|+-|.-++.+=+-+...+..||+.-+|..+.+ .++..|+.||.+++.+.. .-|+++..+..
T Consensus 97 le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~----~~~~lR~~Aa~Vigt~~q---NNP~~Qe~v~E 164 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLEN----SDAELRELAARVIGTAVQ---NNPKSQEQVIE 164 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcC----CcHHHHHHHHHHHHHHHh---cCHHHHHHHHH
Confidence 344567888888888877888888999999999996654 478999999999999987 57888876654
No 132
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=29.12 E-value=1.6e+02 Score=33.42 Aligned_cols=35 Identities=6% Similarity=0.190 Sum_probs=31.9
Q ss_pred CcccceEEEEeeceEEEecCCCCceEEEeeccCCC
Q 000056 136 SEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMD 170 (2526)
Q Consensus 136 ~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~ 170 (2526)
.+...|.|.|++.||..+|+.|++++..++.++|.
T Consensus 52 ~k~~~V~L~IS~~GI~v~d~~t~~~~~~~~i~~IS 86 (142)
T cd01273 52 AKLQKVEIRISIDGVIIAEPKTKAPMHTFPLGRIS 86 (142)
T ss_pred ccCcEEEEEEECCeEEEEEcCCCcEEEEcCcceEE
Confidence 45679999999999999999999999999988886
No 133
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=28.84 E-value=52 Score=42.05 Aligned_cols=52 Identities=31% Similarity=0.598 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCC-------chHHHHHHHHHHHHHhhccccCCCCCChhh
Q 000056 1540 IDEEKLKRQYRKLAMKYHPDKNP-------EGREKFLAVQKAYERLQATMQGLQGPQPWR 1592 (2526)
Q Consensus 1540 a~e~~IKkAYRkLa~k~HPDKnp-------~a~ekF~~I~~AYEvLsd~~~r~~~p~~~~ 1592 (2526)
++...|+.+|++.+..+|||+-. ..++-|+.|++||++|++. ++-|-++.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~-~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDD-EPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhcc-ccccchhhhh
Confidence 46678999999999999999873 3677899999999999983 3334455444
No 134
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.02 E-value=6.7e+02 Score=35.05 Aligned_cols=168 Identities=19% Similarity=0.201 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhc-chHHH
Q 000056 2022 MIKNLQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADG-SSLLL 2100 (2526)
Q Consensus 2022 ~l~~l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~-~vl~~ 2100 (2526)
.++....+++...+++.++..=.. .....+.+|++|+..+ .+..-.|.++.....+..=++.+.... ..+.+
T Consensus 377 el~~t~~ale~a~~ic~~~~~g~~--~~~~el~~L~~~i~~P-----vVa~GVL~wi~~~l~~~~~~~~~~~~~p~~L~L 449 (584)
T PF04858_consen 377 ELKSTKQALEKAHAICCNAARGSS--ELQAELPKLYSCIRYP-----VVAMGVLRWIESFLTDPSYFSSITELTPVHLAL 449 (584)
T ss_pred HHHHHHHHHHHHHHHhhccccccc--hhHHHHHHHHHHhCCC-----hhhHHHHHHHHHHhcCcchhhhccccCchHHHH
Confidence 345556677777788776542111 2224677788888653 566778888865554554444333212 22222
Q ss_pred HHHHHhhCcchHHHHHHHHHHhhc-----chHHHHHHHHcCCHhhhHHhhcCC--------------C-CCCcHHHHHHH
Q 000056 2101 LLQMLHYAPACREGVLHVLYALAS-----TPELAWAAAKHGGVVYILELLLPS--------------Q-QETPLQQRAAA 2160 (2526)
Q Consensus 2101 Ll~lL~~~p~~~~~vL~~L~aL~s-----~t~lVkqal~~GgvlyLL~LL~~s--------------~-e~~~~~~R~~a 2160 (2526)
|-.....+|..+..+|++|..+.. .+.+++..+++..+-.++.|+.-+ + .--++-+|-=+
T Consensus 450 LdeIa~~Hp~lr~~vl~lL~~~le~~~~~l~~l~~le~kr~ilD~~V~L~s~G~VlPVl~~i~~~~~~~~iD~SLiRyFv 529 (584)
T PF04858_consen 450 LDEIATRHPLLRPSVLDLLVRLLESEGDELDILVQLELKRTILDRMVHLLSRGYVLPVLEYIRKCWARGDIDPSLIRYFV 529 (584)
T ss_pred hhHHHhcCHhhHHHHHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHhCCeeehHHHHHHHHHhccCCcHHHHHHHH
Confidence 333334678888889998877774 223455555555544444444332 1 11134455555
Q ss_pred HHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCc
Q 000056 2161 ASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGP 2197 (2526)
Q Consensus 2161 A~lL~kM~aDklhGPrV~~~L~KfLP~~fvdamrdsP 2197 (2526)
-++| .+.+.|..++-|...+.-.-=+...++||..+
T Consensus 530 ~eVL-eii~PPYS~~Fv~~~l~ll~~~~i~~~~~~~~ 565 (584)
T PF04858_consen 530 TEVL-EIIGPPYSPEFVQLFLPLLENAEIRGGMRTEG 565 (584)
T ss_pred HHHH-HHcCCCCCHHHHHHHHHHHhchhhhhhhccCC
Confidence 6665 34455555555555544444445555554433
No 135
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=27.19 E-value=86 Score=36.34 Aligned_cols=61 Identities=23% Similarity=0.354 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhccccCCCCCCCccccCcchhhhccCCCchHHHHHhhhcCCc--hHHHHHHHHHHHHHhhChH
Q 000056 1241 GEAALAILHNMVSAHSDLDDAGEIVTPTPRVKWILSSSRCLPHIAQAMLSGEP--SIVEAAAALLKAVVTRNPK 1312 (2526)
Q Consensus 1241 ~~~~L~iL~~~~~~~p~~d~~g~ii~P~Prvkr~Ls~~~~LphlvQlLLt~~p--~lve~~~~LL~~l~~~n~~ 1312 (2526)
-..++..|..++. -++..|-..|.+.-|. ||-++|.|+.... ...+.++..|..+|..+|.
T Consensus 85 ~~~ai~~L~~l~~----------~~~~~p~l~Rei~tp~-l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 85 LEAAIITLTRLFD----------LIRGKPTLTREIATPN-LPKFIQSLLQLLQDSSCPETALDALATLLPHHPT 147 (165)
T ss_pred HHHHHHHHHHHHH----------HhcCCCchHHHHhhcc-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCc
Confidence 3455556666555 4566677677776555 9999999999888 9999999999999999886
No 136
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=26.88 E-value=2e+02 Score=32.11 Aligned_cols=79 Identities=9% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCC--CccccccCCCCC--
Q 000056 135 NSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGR--KSKAFQAAPGTT-- 210 (2526)
Q Consensus 135 k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~--~~r~~l~~~~~~-- 210 (2526)
......|.|.|++.||..+|+.+++++..++.++|. +...-.. ++.=|+..--.++ .-.-|+|.+...
T Consensus 41 ~~k~~~V~L~IS~~gi~i~d~~t~~~l~~~~i~~IS---fc~~d~~-----~~~~FafIa~~~~~~~~~ChvF~~~~~~~ 112 (132)
T cd01267 41 WEKIPKVELDISIKGVKIIDPKTKTVLHGHPLYNIS---CCAQDKE-----DLRFFAFIAKDTETNKHYCHVFCSEKLGL 112 (132)
T ss_pred cCCCCeEEEEEEcCcEEEEeCCCCcEEEEcccceEE---EEecCCC-----CCeEEEEEEecCCCCceEEEEEECCCHHH
Q ss_pred hHHHHHHHHHH
Q 000056 211 NSAIVSSLTKT 221 (2526)
Q Consensus 211 ~~~ii~~i~~~ 221 (2526)
-++|+..|-++
T Consensus 113 A~~I~~tig~A 123 (132)
T cd01267 113 AEEIILTIGQA 123 (132)
T ss_pred HHHHHHHHHHH
No 137
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like).
Probab=26.52 E-value=1.8e+02 Score=31.37 Aligned_cols=70 Identities=16% Similarity=0.157 Sum_probs=49.0
Q ss_pred ceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCChHHHH
Q 000056 140 PYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTNSAIV 215 (2526)
Q Consensus 140 p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~r----~~l~~~~~~~~~ii 215 (2526)
++.|++|+..|..+|.+++.++.+.+|+.|..-|- | .+-|-+. -|+.+- .|-|.+ ...++|.
T Consensus 21 ~y~L~lt~~~L~L~~~~~~~~~~~wpl~~lRRyG~----~-------~~~FsfE--aGRrc~tG~G~f~f~t-~~a~~i~ 86 (98)
T smart00310 21 SYRLRLTSETLVLWRLNPRVELVVWPLLSLRRYGR----D-------KNFFFFE--AGRRCVSGPGEFTFQT-VVAQEIF 86 (98)
T ss_pred eEEEEECCcEEEEEecCCCccEEEeehhHeeeecC----C-------CCEEEEE--ccCcCCCCCCEEEEEc-CcHHHHH
Confidence 89999999999999987888888999999985332 3 2444342 454333 566665 3667787
Q ss_pred HHHHHHHh
Q 000056 216 SSLTKTAK 223 (2526)
Q Consensus 216 ~~i~~~A~ 223 (2526)
+.|.++.+
T Consensus 87 ~~v~~a~~ 94 (98)
T smart00310 87 QLVLEAMQ 94 (98)
T ss_pred HHHHHHHH
Confidence 77765543
No 138
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.33 E-value=7.1e+02 Score=36.88 Aligned_cols=112 Identities=18% Similarity=0.216 Sum_probs=72.8
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHh---hCc--chHHHHHHHHHHhhc-chHHHHHHHHcCCHhhhHH
Q 000056 2070 IPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLH---YAP--ACREGVLHVLYALAS-TPELAWAAAKHGGVVYILE 2143 (2526)
Q Consensus 2070 vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~---~~p--~~~~~vL~~L~aL~s-~t~lVkqal~~GgvlyLL~ 2143 (2526)
....|.++|-+++.+-.-- .+++.++..+. .++ ..+..+|-.|..... ..+.++. -+.-+++
T Consensus 325 ~~~~A~~~lDrlA~~L~g~-------~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-----~l~~Il~ 392 (1075)
T KOG2171|consen 325 PYRAAEQALDRLALHLGGK-------QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG-----NLPKILP 392 (1075)
T ss_pred cHHHHHHHHHHHHhcCChh-------hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH-----HHHHHHH
Confidence 4566777776666333211 23333333332 222 334456655555443 3333433 3445677
Q ss_pred hhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhc
Q 000056 2144 LLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRD 2195 (2526)
Q Consensus 2144 LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~KfLP~~fvdamrd 2195 (2526)
+.+|.-++..|.+|-+|..+++.|.+| .+|-++-.-...+|+.++..|-+
T Consensus 393 ~Vl~~l~DphprVr~AA~naigQ~std--l~p~iqk~~~e~l~~aL~~~ld~ 442 (1075)
T KOG2171|consen 393 IVLNGLNDPHPRVRYAALNAIGQMSTD--LQPEIQKKHHERLPPALIALLDS 442 (1075)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHhhhhh--hcHHHHHHHHHhccHHHHHHhcc
Confidence 766666667899999999999999999 78999999999999999998855
No 139
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=25.56 E-value=2.4e+02 Score=40.56 Aligned_cols=128 Identities=13% Similarity=0.113 Sum_probs=80.0
Q ss_pred HHHHHHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhhhhcccchhcccchhhHHHHHHhhcCCCChhHHHH
Q 000056 526 VGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHATMMHTKSVLFSQQGYLIVLVNRLRPMSVSPLLSM 605 (2526)
Q Consensus 526 ~~~v~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~~~~~nKs~ll~~~~~~~~L~~~l~~~~~~aLv~~ 605 (2526)
++-+..++.-.+-+|+.-|+.+|+.|+...|.- .+..+..++..++.+++.--.-....+
T Consensus 695 L~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~--------------------l~~~~~~iL~~ii~ll~Spllqg~al~ 754 (1233)
T KOG1824|consen 695 LVELPPLISESDLHVTQLAVAFLTTLAIIQPSS--------------------LLKISNPILDEIIRLLRSPLLQGGALS 754 (1233)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHH--------------------HHHHhhhhHHHHHHHhhCccccchHHH
Confidence 345566666777778888999998888643322 233556788999999996323345678
Q ss_pred HHHHHHhhhccCCCCCCCChHHHHHHHHHHHhhhhHHH--HhhCCChhhHHhHHHHHHHHHHhhcHHHHHHHHH
Q 000056 606 AVVEVLETMICEPHSETTQYTVFVELLRQVAGLRRRLF--ALFGHPAESVRETVAVIMRTIAEEDAIAAESMRD 677 (2526)
Q Consensus 606 a~l~~l~~~lC~P~seTT~~~~f~~ll~~va~~gr~lf--~Lf~hp~~~i~~~aglimrai~Ee~~~~a~~mq~ 677 (2526)
++++||++.+ ++.+++-. |..++..+.+---.-- -|-.|--++|.+-|+.|..+-=++....|.+|-.
T Consensus 755 ~~l~~f~alV---~t~~~~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~ 824 (1233)
T KOG1824|consen 755 ALLLFFQALV---ITKEPDLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQ 824 (1233)
T ss_pred HHHHHHHHHH---hcCCCCcc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 9999999999 77777766 7766655521100000 1222323456777777766655555555555543
No 140
>cd01210 EPS8 Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. EPS8 is a regulator of Rac signaling. It consists of a PTB and an SH3 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=25.19 E-value=1.7e+02 Score=33.01 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=54.9
Q ss_pred ccCCccc-ceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccC--CCccccccCCCC
Q 000056 133 RRNSEWV-PYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYG--RKSKAFQAAPGT 209 (2526)
Q Consensus 133 ~~k~~w~-p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g--~~~r~~l~~~~~ 209 (2526)
+.++-|. ...|+|..-.|-.+|+.||+.+=+|++..|.-+... ++.. .+++=.++.---+ ++.-+|+|-|..
T Consensus 35 ~~G~iW~Q~m~lqv~~~~v~LlD~etk~elE~fpl~~I~~~~a~-~~~~----~ynslL~~vvq~~~~~~~e~hlFQc~~ 109 (127)
T cd01210 35 KQGRVWSQKMILRVRYQWVTLLDYETKEELESYPLSLIQEPTAF-TSME----LYNSILLFVVQEPGGSRTEMHIFQCQR 109 (127)
T ss_pred hcCCccccceEEEEcCCeEEEEcCCCcChhhcCCHhhcccccee-cCCC----CcCceEEEEEeCCCCCCCcEEEEEecc
Confidence 5688999 999999999999999999999999999999854221 2221 1345333321122 344599999863
Q ss_pred -ChHHHHHHHH
Q 000056 210 -TNSAIVSSLT 219 (2526)
Q Consensus 210 -~~~~ii~~i~ 219 (2526)
.-+.|...|.
T Consensus 110 v~A~~i~~DL~ 120 (127)
T cd01210 110 VGAEHLVEDLQ 120 (127)
T ss_pred ccHHHHHHHHH
Confidence 3334555554
No 141
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=23.92 E-value=1.4e+02 Score=31.09 Aligned_cols=58 Identities=17% Similarity=0.310 Sum_probs=47.0
Q ss_pred ceEEEEeecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeech
Q 000056 36 YKRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSSR 103 (2526)
Q Consensus 36 YkRif~Ig~~~i~T~nP~tlevTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~K~~~mkFss~ 103 (2526)
-+..+-|++.||..|+.++ ..|.++| ++|..++-. ...|+|.++... ++..++.|.+.
T Consensus 15 ~~~~lGV~~~Gi~v~~~~~--~~~~f~W-~~I~~isf~------~k~F~i~~~~~~-~~~~~~~f~~~ 72 (92)
T cd00836 15 TELLLGVTAEGILVYDDGT--PINEFPW-PEIRKISFK------RKKFTLKVRDKD-GQEITLSFQTP 72 (92)
T ss_pred CeEEEEEeCCCcEEecCCC--EEEEEEc-ccceEEEEc------CCEEEEEEecCc-CceeeEEEECC
Confidence 5677899999999999887 7899999 799888863 359999998652 45677888864
No 142
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.31 E-value=91 Score=34.08 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=58.9
Q ss_pred EEEEe-eccc--ccceEEEEeecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeee
Q 000056 25 YLVVK-HSWR--GRYKRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFS 101 (2526)
Q Consensus 25 y~vtK-hSWr--gkYkRif~Ig~~~i~T~nP~tlevTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~K~~~mkFs 101 (2526)
.|+|| -|.- ++|-+|+ ||..|+--||-.+.+--=|-+| +.+.-|..++...+-.-+|.|-+.+. +| .+|+
T Consensus 10 ~~~t~gtaYlg~~~~Gkil-iGDkgfEFYn~~nv~k~iqipW-s~i~~v~vsvs~KK~~~~f~i~td~~--gk---~~Fa 82 (122)
T COG4687 10 DYSTKGTAYLGFAEYGKIL-IGDKGFEFYNDRNVEKFIQIPW-SEINEVDVSVSLKKWGRQFSIFTDTQ--GK---VRFA 82 (122)
T ss_pred EEEecceEEeehhhcCeEE-EcccceeecCCCChhheeEecH-HHhheeheeehhhhhcceEEEEEcCC--ce---EEEE
Confidence 45666 4443 3788886 8999999999888876667777 56654444332334556999997764 33 9999
Q ss_pred chhhhHHHHHHHHh
Q 000056 102 SRFRASILTELHRI 115 (2526)
Q Consensus 102 s~~Ra~lLT~l~r~ 115 (2526)
|..-..+|.-.-.+
T Consensus 83 Skdsg~iLk~ir~y 96 (122)
T COG4687 83 SKDSGKILKKIREY 96 (122)
T ss_pred eCCchhHHHHHHHH
Confidence 99999988765443
No 143
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.93 E-value=3.7e+02 Score=38.18 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhhCccchhhcc---------ccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcc
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFS---------TKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGS 2096 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~---------s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~ 2096 (2526)
+..+.+||..+|+.++++-..+- ...-..+.+.-|.+...+...+..+-|++|+.|.. ..-+. .
T Consensus 320 ~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~-esni~------~ 392 (968)
T KOG1060|consen 320 VTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLAN-ESNIS------E 392 (968)
T ss_pred HHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhh-hccHH------H
Confidence 45568999999999998432111 01111233444444444556688899999987762 21121 1
Q ss_pred hHHHHHHHHhhCc-chHHHHHHHHHHhhcch-HHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHh-cCCCC
Q 000056 2097 SLLLLLQMLHYAP-ACREGVLHVLYALASTP-ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLV-GQPMH 2173 (2526)
Q Consensus 2097 vl~~Ll~lL~~~p-~~~~~vL~~L~aL~s~t-~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~-aDklh 2173 (2526)
++.-|.-.+++.+ +....+.+.+-..++.- .+--.. .-.|+.++.+. +.-+=+++|.++++|. .|+.-
T Consensus 393 ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tC-----L~gLv~Llssh----de~Vv~eaV~vIk~Llq~~p~~ 463 (968)
T KOG1060|consen 393 ILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTC-----LNGLVQLLSSH----DELVVAEAVVVIKRLLQKDPAE 463 (968)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHH-----HHHHHHHHhcc----cchhHHHHHHHHHHHHhhChHH
Confidence 3333333334322 34444555554444311 111111 22466666654 4456777888888887 36655
Q ss_pred ChHHHHHHHhhCcHHHHHHHh
Q 000056 2174 GPRVAITLARFLPDGLVSVIR 2194 (2526)
Q Consensus 2174 GPrV~~~L~KfLP~~fvdamr 2194 (2526)
--++-.-|.|+++.+.+.+-|
T Consensus 464 h~~ii~~La~lldti~vp~AR 484 (968)
T KOG1060|consen 464 HLEILFQLARLLDTILVPAAR 484 (968)
T ss_pred HHHHHHHHHHHhhhhhhhhhh
Confidence 556777788888777776544
No 144
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.04 E-value=7.6e+02 Score=34.60 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=68.7
Q ss_pred hhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhhccCch-HhHHHHHHHHHhcCCccchHHHHHHHhhCcHHHH
Q 000056 2391 RLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGS-ILALETLKRVVVAGNRARDALVAQGLKVGLVDVL 2469 (2526)
Q Consensus 2391 ~~s~l~vlh~ls~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~-~la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~L 2469 (2526)
.--.|++++.--.++.=.+... +| +|..+..|.....+++.. +..++.|.++|......-+.|++..++-.++..+
T Consensus 419 a~GVL~wi~~~l~~~~~~~~~~--~~-~p~~L~LLdeIa~~Hp~lr~~vl~lL~~~le~~~~~l~~l~~le~kr~ilD~~ 495 (584)
T PF04858_consen 419 AMGVLRWIESFLTDPSYFSSIT--EL-TPVHLALLDEIATRHPLLRPSVLDLLVRLLESEGDELDILVQLELKRTILDRM 495 (584)
T ss_pred hHHHHHHHHHHhcCcchhhhcc--cc-CchHHHHhhHHHhcCHhhHHHHHHHHHHHHHccCCcccHHHHHHHHHHHHHHH
Confidence 3456777755444443233333 33 455565555555556655 7899999999998555677899999999999999
Q ss_pred HHhcccccCCCCCCccc------cccccccccchhHHHHHHHHHHHH
Q 000056 2470 LGLLDWRAGGRNGLSSQ------MKWNESEASIGRVLAIEVRMMSIM 2510 (2526)
Q Consensus 2470 L~lLd~~~~~~~g~~~~------~~~~~~~a~~~~v~a~~v~~~~~~ 2510 (2526)
..|+- .|.--+ .+|.+...++.=+|=-...+|+++
T Consensus 496 V~L~s------~G~VlPVl~~i~~~~~~~~iD~SLiRyFv~eVLeii 536 (584)
T PF04858_consen 496 VHLLS------RGYVLPVLEYIRKCWARGDIDPSLIRYFVTEVLEII 536 (584)
T ss_pred HHHHh------CCeeehHHHHHHHHHhccCCcHHHHHHHHHHHHHHc
Confidence 99993 344221 245543444445555555555543
No 145
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=20.62 E-value=1.3e+02 Score=31.14 Aligned_cols=56 Identities=23% Similarity=0.227 Sum_probs=42.1
Q ss_pred EEEeecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeech
Q 000056 39 ILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSSR 103 (2526)
Q Consensus 39 if~Ig~~~i~T~nP~tlevTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~K~~~mkFss~ 103 (2526)
.+.|++.||..|+++.-.-++.+.| .+|..+.=. ...|+|.++.+ ++..+++|.|+
T Consensus 8 ~LGv~~~GI~i~~~~~~~~~~~f~W-~~I~~l~~~------~k~F~I~~~~~--~~~~~~~f~~~ 63 (90)
T PF09380_consen 8 WLGVSPRGISIYRDNNRISTQFFPW-SEISKLSFK------KKKFTIEVRDE--SKEIKLKFYTP 63 (90)
T ss_dssp EEEEESSEEEEEETTBSSSSEEEEG-GGEEEEEEE------TTEEEEEESST--SSSEEEEEE-S
T ss_pred EEEEcCCEeEEEeCCCcccceeeeh-hheeEEEec------ccEEEEEEeec--ccceEEEEEEC
Confidence 4679999999999888432999999 799887752 35999998762 34466777764
No 146
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=20.52 E-value=1.6e+03 Score=28.38 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHh----cHHHHHHhhccchhHHHHHHhh-ccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhhh
Q 000056 498 TVMGFVACLRRLLT----SRTAASHVMSFPAAVGRIMGLL-RNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHAT 572 (2526)
Q Consensus 498 ~~~~~~~aLrRL~a----s~~gf~~~~~~p~~~~~v~~~L-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~~ 572 (2526)
.+...+..|+=++= ||.-|+.-. .+..++.+| ..+...|..+++++|.++|- |...
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~----~m~lll~LL~~~~~~~i~~a~L~tLv~iLl----------d~p~----- 167 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQ----NMELLLDLLSPSNPPAIQSACLDTLVCILL----------DSPE----- 167 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhh----hHHHHHHHhccCCCchHHHHHHHHHHHHHH----------cChH-----
Confidence 44445566665553 444444322 666788999 56678899999999888874 1111
Q ss_pred hcccchhcccchhhHHHHHHhhcCCCChhHHHHHHHHHHhhhc
Q 000056 573 MMHTKSVLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMI 615 (2526)
Q Consensus 573 ~~~nKs~ll~~~~~~~~L~~~l~~~~~~aLv~~a~l~~l~~~l 615 (2526)
|- ..|-.-+.++.+..+++..++.--|=+-++|||.|-+
T Consensus 168 ---N~-r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 168 ---NQ-RDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred ---HH-HHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHH
Confidence 22 5666677899999999999998899999999999876
No 147
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.20 E-value=93 Score=42.72 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=33.6
Q ss_pred CCchHHHHHhhhcCCchHHHHHHHHHHHHHhhChHHHHH
Q 000056 1278 SRCLPHIAQAMLSGEPSIVEAAAALLKAVVTRNPKAMIR 1316 (2526)
Q Consensus 1278 ~~~LphlvQlLLt~~p~lve~~~~LL~~l~~~n~~~~~~ 1316 (2526)
|.-||.|+++|-..|..-.|-+-.-|..|++|+++.+.+
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds 165 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDS 165 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhh
Confidence 788999999999999888999999999999999874443
Done!