Query 000056
Match_columns 2526
No_of_seqs 545 out of 2231
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 11:12:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2och_A Hypothetical protein DN 99.3 1.6E-12 5.5E-17 125.9 6.0 66 1502-1609 7-72 (73)
2 2dn9_A DNAJ homolog subfamily 99.3 4.1E-12 1.4E-16 124.7 6.5 70 1499-1610 3-75 (79)
3 1iur_A KIAA0730 protein; DNAJ 99.2 7.4E-12 2.5E-16 125.7 7.4 62 1497-1583 10-75 (88)
4 2ctp_A DNAJ homolog subfamily 99.2 4.4E-12 1.5E-16 124.2 5.4 70 1499-1610 3-74 (78)
5 2o37_A Protein SIS1; HSP40, J- 99.2 5.5E-12 1.9E-16 127.6 6.0 68 1501-1610 6-73 (92)
6 2ej7_A HCG3 gene; HCG3 protein 99.2 7.2E-12 2.5E-16 123.8 5.8 68 1501-1610 7-78 (82)
7 2ctr_A DNAJ homolog subfamily 99.2 8.8E-12 3E-16 125.0 6.5 70 1499-1610 3-74 (88)
8 2cug_A Mkiaa0962 protein; DNAJ 99.2 1.1E-11 3.7E-16 124.4 6.3 68 1501-1610 15-84 (88)
9 1hdj_A Human HSP40, HDJ-1; mol 99.2 9.8E-12 3.3E-16 121.5 5.1 65 1504-1610 4-70 (77)
10 2ctw_A DNAJ homolog subfamily 99.2 1.6E-11 5.5E-16 127.9 6.3 71 1497-1609 11-84 (109)
11 2yua_A Williams-beuren syndrom 99.2 2.3E-11 7.8E-16 124.6 6.3 60 1498-1582 12-74 (99)
12 2ys8_A RAB-related GTP-binding 99.2 3.6E-11 1.2E-15 121.2 7.3 59 1502-1585 26-86 (90)
13 2dmx_A DNAJ homolog subfamily 99.1 2.5E-11 8.6E-16 122.6 6.1 69 1501-1611 7-79 (92)
14 2ctq_A DNAJ homolog subfamily 99.1 1.2E-11 4E-16 129.5 3.7 70 1501-1612 18-90 (112)
15 2lgw_A DNAJ homolog subfamily 99.1 2.1E-11 7.2E-16 125.0 4.8 65 1504-1610 3-71 (99)
16 1wjz_A 1700030A21RIK protein; 99.1 2E-11 6.7E-16 123.6 3.9 59 1499-1582 12-79 (94)
17 1faf_A Large T antigen; J doma 99.1 4.9E-11 1.7E-15 117.5 6.4 58 1501-1582 9-66 (79)
18 1gh6_A Large T antigen; tumor 99.1 2.4E-11 8.1E-16 127.5 4.3 55 1502-1582 7-63 (114)
19 2guz_A Mitochondrial import in 99.1 9E-11 3.1E-15 113.3 7.1 60 1498-1582 9-68 (71)
20 1bq0_A DNAJ, HSP40; chaperone, 99.1 2.6E-11 8.9E-16 125.0 1.3 66 1504-1611 4-72 (103)
21 2qsa_A DNAJ homolog DNJ-2; J-d 99.0 7.4E-11 2.5E-15 122.8 3.5 67 1502-1610 14-87 (109)
22 2qwo_B Putative tyrosine-prote 99.0 4.3E-11 1.5E-15 120.9 1.6 43 1538-1580 43-91 (92)
23 2pf4_E Small T antigen; PP2A, 99.0 5.3E-11 1.8E-15 132.8 1.9 67 1502-1609 10-76 (174)
24 3apq_A DNAJ homolog subfamily 99.0 1.9E-10 6.4E-15 131.4 5.4 67 1503-1611 2-71 (210)
25 3lz8_A Putative chaperone DNAJ 99.0 6.2E-11 2.1E-15 144.9 0.0 63 1498-1585 23-87 (329)
26 2l6l_A DNAJ homolog subfamily 98.9 4.8E-10 1.6E-14 123.6 5.2 64 1500-1588 7-79 (155)
27 3ag7_A Putative uncharacterize 98.9 1.3E-10 4.6E-15 120.4 0.2 44 1539-1582 51-104 (106)
28 1n4c_A Auxilin; four helix bun 98.8 6.7E-10 2.3E-14 124.7 1.8 58 1503-1585 117-180 (182)
29 3bvo_A CO-chaperone protein HS 98.8 3.5E-09 1.2E-13 121.8 5.8 57 1503-1582 43-107 (207)
30 1fpo_A HSC20, chaperone protei 98.8 4E-09 1.4E-13 118.1 5.5 56 1504-1582 2-65 (171)
31 3hho_A CO-chaperone protein HS 98.7 6.9E-09 2.4E-13 116.5 4.6 56 1504-1582 5-68 (174)
32 2jdq_A Importin alpha-1 subuni 98.7 5.2E-06 1.8E-10 103.2 29.8 326 2026-2474 37-371 (450)
33 3uo3_A J-type CO-chaperone JAC 98.7 3.8E-09 1.3E-13 119.2 1.5 45 1538-1582 28-72 (181)
34 4b8j_A Importin subunit alpha- 98.5 3.9E-05 1.3E-09 98.4 32.6 327 2026-2474 91-424 (528)
35 1wa5_B Importin alpha subunit; 98.5 3.8E-05 1.3E-09 98.8 31.8 326 2026-2474 104-438 (530)
36 3apo_A DNAJ homolog subfamily 98.5 1.6E-08 5.5E-13 136.6 0.4 68 1501-1610 19-89 (780)
37 2z6g_A B-catenin; FULL-length, 98.4 0.00013 4.3E-09 99.1 34.1 514 1661-2448 143-664 (780)
38 1jdh_A Beta-catenin; beta-cate 98.4 0.00046 1.6E-08 87.7 36.5 135 2026-2170 244-386 (529)
39 3tpo_A Importin subunit alpha- 98.3 0.00026 8.9E-09 91.6 32.1 330 2026-2474 93-430 (529)
40 2guz_B Mitochondrial import in 98.2 1.2E-06 4E-11 83.4 5.9 58 1500-1580 1-58 (65)
41 4b8j_A Importin subunit alpha- 98.2 0.00023 7.9E-09 91.3 28.4 298 2052-2474 75-381 (528)
42 3ul1_B Importin subunit alpha- 98.2 0.00031 1.1E-08 90.5 29.7 328 2027-2474 75-411 (510)
43 1jdh_A Beta-catenin; beta-cate 98.2 0.00023 8E-09 90.4 27.2 359 2026-2475 34-408 (529)
44 3tpo_A Importin subunit alpha- 98.1 0.0032 1.1E-07 81.4 36.6 135 2026-2168 310-448 (529)
45 1wa5_B Importin alpha subunit; 98.0 0.00059 2E-08 87.8 27.5 299 2051-2474 87-393 (530)
46 4hxt_A De novo protein OR329; 98.0 0.0002 6.7E-09 81.7 20.1 234 2052-2448 3-242 (252)
47 1xm9_A Plakophilin 1; armadill 97.9 0.00077 2.6E-08 85.9 25.4 370 2026-2474 19-429 (457)
48 2z6h_A Catenin beta-1, beta-ca 97.9 0.0026 8.7E-08 84.2 30.6 377 2026-2474 115-508 (644)
49 3ul1_B Importin subunit alpha- 97.9 0.0014 4.8E-08 84.5 27.3 301 2054-2474 60-368 (510)
50 2z6h_A Catenin beta-1, beta-ca 97.9 0.0027 9.1E-08 84.1 30.0 359 2026-2475 31-405 (644)
51 2z6g_A B-catenin; FULL-length, 97.8 0.003 1E-07 85.8 30.4 358 2027-2475 168-541 (780)
52 4db8_A Armadillo-repeat protei 97.8 0.00057 1.9E-08 78.6 20.0 214 2052-2474 13-232 (252)
53 3now_A UNC-45 protein, SD10334 97.8 0.0024 8.1E-08 86.7 28.6 135 2028-2169 600-737 (810)
54 2jdq_A Importin alpha-1 subuni 97.8 0.00086 2.9E-08 83.3 22.5 326 2027-2474 83-424 (450)
55 3l6x_A Catenin delta-1; cateni 97.8 0.0025 8.6E-08 83.7 27.6 353 2026-2474 65-455 (584)
56 3now_A UNC-45 protein, SD10334 97.7 0.0097 3.3E-07 80.8 31.0 299 2056-2474 382-718 (810)
57 4hxt_A De novo protein OR329; 97.6 0.0066 2.2E-07 69.1 24.1 214 2098-2474 4-222 (252)
58 1xm9_A Plakophilin 1; armadill 97.5 0.0092 3.2E-07 76.0 25.5 138 2026-2171 301-451 (457)
59 2y4t_A DNAJ homolog subfamily 97.3 0.00014 4.8E-09 89.4 4.7 51 1538-1588 392-448 (450)
60 1wh2_A Hypothetical protein AT 97.2 0.00026 9E-09 69.6 5.2 55 1169-1224 15-69 (78)
61 3nmz_A APC variant protein; pr 97.2 0.084 2.9E-06 67.7 28.7 310 2026-2448 99-451 (458)
62 4db6_A Armadillo repeat protei 97.1 0.0094 3.2E-07 66.6 17.4 177 2026-2232 29-208 (210)
63 3nmz_A APC variant protein; pr 97.1 0.11 3.9E-06 66.5 28.9 137 2029-2170 307-451 (458)
64 3nmw_A APC variant protein; AR 97.0 0.15 5.1E-06 63.2 27.7 262 2072-2448 50-335 (354)
65 4db8_A Armadillo-repeat protei 96.9 0.0065 2.2E-07 69.8 14.0 137 2026-2170 29-168 (252)
66 4db6_A Armadillo repeat protei 96.8 0.0074 2.5E-07 67.5 13.1 136 2026-2169 71-209 (210)
67 3l6x_A Catenin delta-1; cateni 96.7 0.13 4.3E-06 67.9 25.2 138 2026-2170 326-477 (584)
68 3nmw_A APC variant protein; AR 96.7 0.37 1.3E-05 59.8 28.0 147 2027-2180 189-343 (354)
69 1xqr_A HSPBP1 protein; armadil 96.3 0.025 8.6E-07 68.5 14.0 136 2026-2170 57-197 (296)
70 1xqr_A HSPBP1 protein; armadil 95.3 0.056 1.9E-06 65.5 11.1 148 2026-2183 99-249 (296)
71 3k3v_A Protein SMY2; GYF domai 94.8 0.02 6.7E-07 58.8 4.2 51 1171-1221 15-73 (100)
72 3tt9_A Plakophilin-2; cell adh 93.1 0.41 1.4E-05 56.2 11.7 149 2027-2183 28-191 (233)
73 3opb_A SWI5-dependent HO expre 92.4 7.2 0.00025 52.9 23.2 318 2027-2474 230-555 (778)
74 4fdd_A Transportin-1; heat rep 91.5 2 6.8E-05 58.6 17.1 160 2027-2197 146-312 (852)
75 1ibr_B P95, importin beta-1 su 89.5 3.9 0.00013 50.6 15.9 281 2068-2448 144-438 (462)
76 3tt9_A Plakophilin-2; cell adh 86.0 2.4 8.3E-05 49.7 10.3 112 2052-2170 9-125 (233)
77 4gmo_A Putative uncharacterize 85.9 61 0.0021 43.4 25.0 248 2095-2476 34-288 (684)
78 3grl_A General vesicular trans 85.2 10 0.00035 50.5 16.3 198 501-725 141-354 (651)
79 3opb_A SWI5-dependent HO expre 82.6 2.3 8E-05 57.5 9.1 139 2027-2171 475-637 (778)
80 2bpt_A Importin beta-1 subunit 79.7 88 0.003 42.0 23.0 128 2028-2169 243-398 (861)
81 2qk2_A LP04448P; mini spindles 75.0 15 0.00051 42.1 11.7 169 2027-2235 33-207 (242)
82 1b3u_A Protein (protein phosph 74.5 38 0.0013 43.1 16.5 129 2027-2170 182-311 (588)
83 1qgr_A Protein (importin beta 74.4 2E+02 0.0068 38.6 24.2 304 2068-2474 144-461 (876)
84 4fdd_A Transportin-1; heat rep 74.4 63 0.0021 44.0 19.4 220 2136-2474 45-266 (852)
85 1qgr_A Protein (importin beta 72.7 1.3E+02 0.0045 40.4 21.8 134 2027-2169 148-288 (876)
86 1b3u_A Protein (protein phosph 71.0 45 0.0015 42.5 15.9 54 2388-2448 256-311 (588)
87 1mix_A Talin; focal adhesion, 69.9 7.3 0.00025 44.1 7.4 81 24-115 117-200 (206)
88 1syx_B CD2BP2, CD2 antigen cyt 66.5 5 0.00017 40.4 4.4 51 1171-1221 25-80 (86)
89 3grl_A General vesicular trans 62.1 65 0.0022 43.0 14.7 158 2026-2188 229-411 (651)
90 4f7g_A Talin-1; alpha-helix bu 61.4 16 0.00054 42.1 8.1 80 24-114 128-210 (222)
91 4gmo_A Putative uncharacterize 61.0 11 0.00037 50.7 7.6 138 2027-2170 52-215 (684)
92 3oc3_A Helicase MOT1, MOT1; re 56.3 16 0.00054 47.7 7.3 133 522-707 297-430 (800)
93 2bpt_A Importin beta-1 subunit 50.7 5.1E+02 0.018 34.5 21.2 278 2067-2447 148-440 (861)
94 1j0w_A Downstream of tyrosine 46.6 43 0.0015 34.8 7.5 70 139-222 21-95 (103)
95 2qk2_A LP04448P; mini spindles 46.4 2.6E+02 0.0088 31.7 15.0 135 498-669 73-209 (242)
96 2cy5_A Epidermal growth factor 42.9 54 0.0018 35.8 7.8 78 133-216 42-123 (140)
97 2f31_A Diaphanous protein homo 42.0 1.5E+02 0.0052 34.4 12.2 127 498-637 70-197 (233)
98 3f0w_A NUMB-R, NUMB-like prote 41.2 53 0.0018 36.5 7.8 75 137-219 76-153 (168)
99 3eg5_B Protein diaphanous homo 40.9 3.8E+02 0.013 33.5 16.3 133 500-645 138-273 (383)
100 1p5t_A DOK1, docking protein 1 39.6 48 0.0016 35.7 6.7 71 140-224 26-104 (127)
101 2v76_A Docking protein 1; alte 38.9 48 0.0016 34.7 6.4 71 140-224 24-102 (107)
102 3d8d_A Amyloid beta A4 precurs 38.4 1.1E+02 0.0039 33.6 9.5 82 134-221 47-133 (148)
103 2dlw_A Docking protein 2, isof 38.0 40 0.0014 35.6 5.7 71 140-224 29-104 (113)
104 1wgu_A APBB2, amyloid beta (A4 37.5 1.1E+02 0.0037 33.2 9.2 75 135-219 50-127 (136)
105 3so6_A LDL receptor adaptor pr 37.1 1E+02 0.0034 32.7 8.9 65 136-208 41-107 (137)
106 3ivf_A Talin-1; FERM domain, c 37.1 30 0.001 42.9 5.5 81 23-114 281-364 (371)
107 3hie_A Protein PSL1, exocyst c 36.1 61 0.0021 36.5 7.1 76 33-116 62-147 (171)
108 2qk1_A Protein STU2; STU2P, XM 35.2 73 0.0025 37.2 8.2 137 2027-2170 34-176 (249)
109 4dbb_A Amyloid beta A4 precurs 34.0 59 0.002 36.0 6.7 71 136-219 50-126 (162)
110 3dxe_A Amyloid beta A4 protein 33.0 74 0.0025 34.7 7.0 75 135-219 42-118 (140)
111 4ffb_C Protein STU2; tubulin f 32.8 1.3E+02 0.0043 35.4 9.8 133 2028-2176 28-173 (278)
112 3dad_A FH1/FH2 domain-containi 32.6 3.8E+02 0.013 33.2 13.9 176 2026-2214 135-323 (339)
113 2yt0_A Amyloid beta A4 protein 31.8 1E+02 0.0035 34.8 8.1 92 104-219 78-173 (176)
114 1h4r_A Merlin; FERM, neurofibr 31.5 51 0.0018 39.8 6.2 69 24-104 221-290 (314)
115 3u0r_A Apoptosis inhibitor 5; 30.4 1.2E+02 0.0042 39.2 9.4 189 2103-2351 54-268 (507)
116 2ysz_A Amyloid beta A4 precurs 30.3 1.2E+02 0.004 34.6 8.4 75 135-219 50-127 (185)
117 3qij_A Protein 4.1; cytoskelet 29.3 42 0.0014 40.4 4.9 70 24-104 207-277 (296)
118 2bnx_A Diaphanous protein homo 29.3 2.1E+02 0.0073 35.8 11.4 130 498-639 74-203 (386)
119 1xr0_B FGFR signalling adaptor 28.2 1.2E+02 0.0041 32.7 7.4 83 125-223 13-99 (129)
120 3eg5_B Protein diaphanous homo 28.1 65 0.0022 40.4 6.4 90 1662-1755 103-192 (383)
121 2dyq_A Amyloid beta A4 precurs 27.6 1E+02 0.0036 33.8 7.0 77 135-221 50-133 (144)
122 4ffb_C Protein STU2; tubulin f 26.6 4.1E+02 0.014 30.9 12.7 138 497-667 70-213 (278)
123 2of3_A ZYG-9; multifunctional 26.0 1.3E+02 0.0046 35.9 8.3 118 2055-2193 136-257 (266)
124 3au4_A Myosin-X; protein-prote 24.8 48 0.0017 43.3 4.6 66 37-115 467-532 (555)
125 2f31_A Diaphanous protein homo 24.6 82 0.0028 36.7 6.0 90 1662-1755 37-126 (233)
126 3peg_A Neurofibromin; SEC14 do 24.2 41 0.0014 40.8 3.5 69 37-115 205-280 (290)
127 3ltj_A Alpharep-4; protein eng 23.8 6E+02 0.021 27.4 12.7 141 2054-2231 17-165 (201)
128 2ej8_A DCC-interacting protein 22.0 1.1E+02 0.0039 33.6 6.2 75 137-219 55-136 (160)
129 3pg7_A Neurofibromin; SEC lipi 21.9 46 0.0016 39.5 3.3 51 56-116 197-247 (256)
130 3ltm_A Alpha-REP4; protein eng 21.8 6.9E+02 0.024 27.2 12.8 142 2053-2231 21-170 (211)
131 4f7g_A Talin-1; alpha-helix bu 21.5 2E+02 0.0069 32.9 8.5 70 136-219 138-210 (222)
132 2kup_A Fibroblast growth facto 21.4 1.8E+02 0.0061 32.0 7.3 83 125-223 20-106 (146)
133 3a58_A Exocyst complex compone 21.2 1.4E+02 0.0047 36.3 6.9 91 18-116 105-217 (320)
134 2pzi_A Probable serine/threoni 20.8 71 0.0024 42.5 5.1 30 1543-1577 646-675 (681)
No 1
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.30 E-value=1.6e-12 Score=125.87 Aligned_cols=66 Identities=36% Similarity=0.712 Sum_probs=59.3
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhhcc
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQAT 1581 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLsd~ 1581 (2526)
..++|++|||++ +++.++||++||+|+++|||||++++.++|+.|++||++|+|+
T Consensus 7 ~~~~y~iLgl~~-------------------------~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~ 61 (73)
T 2och_A 7 ETGYYDVLGVKP-------------------------DASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDE 61 (73)
T ss_dssp CCCHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSH
T ss_pred CCCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCH
Confidence 347899999994 7899999999999999999999998889999999999999996
Q ss_pred ccCCCCCChhhHHhhhhhhcccccccCC
Q 000056 1582 MQGLQGPQPWRLLLLLKGQCILYRRYGD 1609 (2526)
Q Consensus 1582 ~~r~~~p~~~~~~liLr~qr~~Ydr~g~ 1609 (2526)
. +|..||++|+
T Consensus 62 ~-----------------~R~~YD~~g~ 72 (73)
T 2och_A 62 K-----------------KRQIYDQGGE 72 (73)
T ss_dssp H-----------------HHHHHHHTC-
T ss_pred H-----------------HHHHHHhcCC
Confidence 4 6788999986
No 2
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=4.1e-12 Score=124.72 Aligned_cols=70 Identities=34% Similarity=0.567 Sum_probs=61.5
Q ss_pred CCChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC---chHHHHHHHHHHH
Q 000056 1499 DLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAY 1575 (2526)
Q Consensus 1499 ~~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AY 1575 (2526)
.++..++|+||||++ +++.++||++||+|+++|||||++ ++.++|+.|++||
T Consensus 3 ~~~~~~~y~iLgv~~-------------------------~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay 57 (79)
T 2dn9_A 3 SGSSGDYYQILGVPR-------------------------NASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAY 57 (79)
T ss_dssp SSCCSCHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHH
Confidence 455678999999994 789999999999999999999986 4689999999999
Q ss_pred HHhhccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1576 ERLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1576 EvLsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
++|+|+. +|..||++|..
T Consensus 58 ~~L~d~~-----------------~R~~YD~~g~~ 75 (79)
T 2dn9_A 58 EVLSDEV-----------------KRKQYDAYGSG 75 (79)
T ss_dssp HHHHSHH-----------------HHHHHHHSCCC
T ss_pred HHHCCHH-----------------HHHHHHhccCc
Confidence 9999964 67889999864
No 3
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.24 E-value=7.4e-12 Score=125.70 Aligned_cols=62 Identities=32% Similarity=0.509 Sum_probs=55.7
Q ss_pred CCCCChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHH
Q 000056 1497 PMDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQ 1572 (2526)
Q Consensus 1497 ~~~~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~ 1572 (2526)
|..++..++|+||||+. +++.++||+|||+|+++||||||++ +.++|+.|+
T Consensus 10 ~~~~~~~~~y~vLgv~~-------------------------~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~ 64 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAW-------------------------KLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQ 64 (88)
T ss_dssp CSSSCHHHHHHHHHHTT-------------------------SSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHhCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHH
Confidence 55677899999999994 7899999999999999999999986 679999999
Q ss_pred HHHHHhhcccc
Q 000056 1573 KAYERLQATMQ 1583 (2526)
Q Consensus 1573 ~AYEvLsd~~~ 1583 (2526)
+||++|+|...
T Consensus 65 ~AYevL~~~~~ 75 (88)
T 1iur_A 65 NEINRLEKQAF 75 (88)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhhcc
Confidence 99999999653
No 4
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4.4e-12 Score=124.24 Aligned_cols=70 Identities=36% Similarity=0.565 Sum_probs=61.8
Q ss_pred CCChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHH
Q 000056 1499 DLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYE 1576 (2526)
Q Consensus 1499 ~~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYE 1576 (2526)
.++..++|+||||++ +++.++||++||+|+++|||||++ ++.++|+.|++||+
T Consensus 3 ~~~~~~~y~iLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~ 57 (78)
T 2ctp_A 3 SGSSGDYYEILGVSR-------------------------GASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYA 57 (78)
T ss_dssp CSCSCCHHHHHTCCT-------------------------TCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHH
Confidence 456678999999994 789999999999999999999996 57899999999999
Q ss_pred HhhccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1577 RLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1577 vLsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+|+|+. +|..||++|..
T Consensus 58 ~L~d~~-----------------~R~~YD~~~~~ 74 (78)
T 2ctp_A 58 VLSNPE-----------------KRKQYDQFGSG 74 (78)
T ss_dssp HHTSHH-----------------HHHHHHHTCSC
T ss_pred HHCCHH-----------------HHHHHHHcCcc
Confidence 999964 67789999864
No 5
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.23 E-value=5.5e-12 Score=127.57 Aligned_cols=68 Identities=37% Similarity=0.619 Sum_probs=60.3
Q ss_pred ChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhhc
Q 000056 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQA 1580 (2526)
Q Consensus 1501 s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLsd 1580 (2526)
...++|+||||++ +++.++||++||+|+++|||||+++..++|+.|++||++|+|
T Consensus 6 ~~~~~y~iLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d 60 (92)
T 2o37_A 6 KETKLYDLLGVSP-------------------------SANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILND 60 (92)
T ss_dssp SCCHHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTS
T ss_pred cCCCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCC
Confidence 4568999999994 789999999999999999999999888999999999999999
Q ss_pred cccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+. +|..||++|..
T Consensus 61 ~~-----------------~R~~YD~~~~~ 73 (92)
T 2o37_A 61 PQ-----------------KREIYDQYGLE 73 (92)
T ss_dssp HH-----------------HHHHHHHHCHH
T ss_pred HH-----------------HHHHHHHHCHH
Confidence 75 57778888753
No 6
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=7.2e-12 Score=123.81 Aligned_cols=68 Identities=38% Similarity=0.686 Sum_probs=60.0
Q ss_pred ChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHH
Q 000056 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYE 1576 (2526)
Q Consensus 1501 s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYE 1576 (2526)
...++|+||||++ +++.++||+|||+|+++|||||+++ +.++|+.|++||+
T Consensus 7 ~~~~~y~iLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~ 61 (82)
T 2ej7_A 7 GMVDYYEVLDVPR-------------------------QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYE 61 (82)
T ss_dssp SSCCHHHHTTCCT-------------------------TCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHH
Confidence 3467999999994 7899999999999999999999974 5679999999999
Q ss_pred HhhccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1577 RLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1577 vLsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+|+|+. +|..||++|..
T Consensus 62 ~L~d~~-----------------~R~~YD~~g~~ 78 (82)
T 2ej7_A 62 VLSDAK-----------------KRDIYDRYGSG 78 (82)
T ss_dssp HHSSTT-----------------HHHHHHHTCCC
T ss_pred HHCCHH-----------------HHHHHHHcCcc
Confidence 999975 67889999865
No 7
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=8.8e-12 Score=125.01 Aligned_cols=70 Identities=34% Similarity=0.529 Sum_probs=61.0
Q ss_pred CCChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHH
Q 000056 1499 DLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYE 1576 (2526)
Q Consensus 1499 ~~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~--a~ekF~~I~~AYE 1576 (2526)
..+..++|+||||++ +++.++||++||+|+++|||||++. +.++|+.|++||+
T Consensus 3 ~~~~~~~y~iLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~ 57 (88)
T 2ctr_A 3 SGSSGSYYDILGVPK-------------------------SASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYE 57 (88)
T ss_dssp SCCCCSHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHcCcCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHH
Confidence 345668999999994 7899999999999999999999974 6889999999999
Q ss_pred HhhccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1577 RLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1577 vLsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+|+|+. +|..||++|..
T Consensus 58 ~L~d~~-----------------~R~~Yd~~~~~ 74 (88)
T 2ctr_A 58 TLSDAN-----------------RRKEYDTLGHS 74 (88)
T ss_dssp HHHSSH-----------------HHHHHHHTCHH
T ss_pred HHCCHH-----------------HHHHHHHhCcc
Confidence 999975 67788988854
No 8
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.20 E-value=1.1e-11 Score=124.36 Aligned_cols=68 Identities=31% Similarity=0.593 Sum_probs=60.2
Q ss_pred ChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHh
Q 000056 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERL 1578 (2526)
Q Consensus 1501 s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvL 1578 (2526)
...++|+||||++ +++.++||++||+|+++|||||++ ++.++|+.|++||++|
T Consensus 15 ~~~d~y~iLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L 69 (88)
T 2cug_A 15 LDFDPYRVLGVSR-------------------------TASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEIL 69 (88)
T ss_dssp SSSCHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHcCcCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHH
Confidence 3457999999994 789999999999999999999986 5789999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
+|+. +|..||++|..
T Consensus 70 ~d~~-----------------~R~~YD~~g~~ 84 (88)
T 2cug_A 70 SNEE-----------------KRTNYDHYGSG 84 (88)
T ss_dssp HSHH-----------------HHHHHHHHTTC
T ss_pred CCHH-----------------HHHHHHHcCCC
Confidence 9964 67789999864
No 9
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.19 E-value=9.8e-12 Score=121.53 Aligned_cols=65 Identities=34% Similarity=0.673 Sum_probs=58.4
Q ss_pred HHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhhcc
Q 000056 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQAT 1581 (2526)
Q Consensus 1504 ~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLsd~ 1581 (2526)
++|++|||++ +++.++||+|||+|+++|||||++ ++.++|+.|++||++|+|+
T Consensus 4 ~~y~iLgv~~-------------------------~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~ 58 (77)
T 1hdj_A 4 DYYQTLGLAR-------------------------GASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDP 58 (77)
T ss_dssp CSHHHHTCCT-------------------------TCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCH
Confidence 5799999994 789999999999999999999986 5789999999999999996
Q ss_pred ccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1582 MQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1582 ~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
. +|..||++|..
T Consensus 59 ~-----------------~R~~Yd~~~~~ 70 (77)
T 1hdj_A 59 R-----------------KREIFDRYGEE 70 (77)
T ss_dssp H-----------------HHHHHHHTCGG
T ss_pred H-----------------HHHHHHHHccc
Confidence 4 67889999865
No 10
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.17 E-value=1.6e-11 Score=127.87 Aligned_cols=71 Identities=35% Similarity=0.667 Sum_probs=61.4
Q ss_pred CCCCChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHH
Q 000056 1497 PMDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQK 1573 (2526)
Q Consensus 1497 ~~~~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~ 1573 (2526)
....+..++|+||||++ +++.++||+|||+|+++|||||+++ +.++|+.|++
T Consensus 11 ~~~~~~~~~Y~vLgv~~-------------------------~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~ 65 (109)
T 2ctw_A 11 SLSTSGESLYHVLGLDK-------------------------NATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINN 65 (109)
T ss_dssp CTTSCSCCHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHcCcCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHH
Confidence 34456678999999994 7899999999999999999999974 6889999999
Q ss_pred HHHHhhccccCCCCCChhhHHhhhhhhcccccccCC
Q 000056 1574 AYERLQATMQGLQGPQPWRLLLLLKGQCILYRRYGD 1609 (2526)
Q Consensus 1574 AYEvLsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~ 1609 (2526)
||++|+|+. +|..||++|.
T Consensus 66 Ay~vL~d~~-----------------~R~~YD~~g~ 84 (109)
T 2ctw_A 66 AHAILTDAT-----------------KRNIYDKYGS 84 (109)
T ss_dssp HHHHHTCHH-----------------HHHHHHHTCH
T ss_pred HHHHHcCHH-----------------HHHHHHHhcc
Confidence 999999965 5777888875
No 11
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.3e-11 Score=124.64 Aligned_cols=60 Identities=23% Similarity=0.458 Sum_probs=53.9
Q ss_pred CCCChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHH
Q 000056 1498 MDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKA 1574 (2526)
Q Consensus 1498 ~~~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~A 1574 (2526)
..++..++|+||||++ +++.++||+|||+|+++|||||+++ +.++|+.|++|
T Consensus 12 ~~~~~~~~Y~vLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~A 66 (99)
T 2yua_A 12 CSYSRTALYDLLGVPS-------------------------TATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQA 66 (99)
T ss_dssp CSSCSSHHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHH
T ss_pred CCCCccCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHH
Confidence 3466789999999994 7899999999999999999999964 78899999999
Q ss_pred HHHhhccc
Q 000056 1575 YERLQATM 1582 (2526)
Q Consensus 1575 YEvLsd~~ 1582 (2526)
|++|+|+.
T Consensus 67 y~~L~d~~ 74 (99)
T 2yua_A 67 YVVLGSAT 74 (99)
T ss_dssp HHHTTSHH
T ss_pred HHHHCCHH
Confidence 99999975
No 12
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.6e-11 Score=121.20 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=52.8
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2526)
..++|+||||++ +++.++||+|||+|+++|||||++ ++.++|+.|++||++|+
T Consensus 26 ~~~~y~iLgv~~-------------------------~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~ 80 (90)
T 2ys8_A 26 SKDSWDMLGVKP-------------------------GASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALL 80 (90)
T ss_dssp CSSHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHcCcCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHC
Confidence 367999999994 789999999999999999999994 68899999999999999
Q ss_pred ccccCC
Q 000056 1580 ATMQGL 1585 (2526)
Q Consensus 1580 d~~~r~ 1585 (2526)
|+..|.
T Consensus 81 d~~~R~ 86 (90)
T 2ys8_A 81 KNIKSG 86 (90)
T ss_dssp HHHCCS
T ss_pred Cccccc
Confidence 986543
No 13
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.5e-11 Score=122.58 Aligned_cols=69 Identities=36% Similarity=0.608 Sum_probs=59.9
Q ss_pred ChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHH
Q 000056 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYE 1576 (2526)
Q Consensus 1501 s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYE 1576 (2526)
...++|+||||++ +++.++||++||+|+++|||||+++ +.++|+.|++||+
T Consensus 7 ~~~~~y~iLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~ 61 (92)
T 2dmx_A 7 GMANYYEVLGVQA-------------------------SASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYE 61 (92)
T ss_dssp CCCCHHHHHTCCT-------------------------TCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHH
Confidence 3467999999994 6788999999999999999999974 5789999999999
Q ss_pred HhhccccCCCCCChhhHHhhhhhhcccccccCCcc
Q 000056 1577 RLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDVL 1611 (2526)
Q Consensus 1577 vLsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l 1611 (2526)
+|+|+. +|..||++|...
T Consensus 62 ~L~d~~-----------------~R~~Yd~~~~~~ 79 (92)
T 2dmx_A 62 VLSDSK-----------------KRSLYDRAGCDS 79 (92)
T ss_dssp HHHSHH-----------------HHHHHHHHCSCS
T ss_pred HHCCHH-----------------HHHHHHHhCccc
Confidence 999964 677899988653
No 14
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.2e-11 Score=129.47 Aligned_cols=70 Identities=26% Similarity=0.337 Sum_probs=60.7
Q ss_pred ChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHH
Q 000056 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYER 1577 (2526)
Q Consensus 1501 s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEv 1577 (2526)
...++|+||||++ +++.++||+|||+|+++|||||+++ +.++|+.|++||++
T Consensus 18 ~~~d~Y~iLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~v 72 (112)
T 2ctq_A 18 DTEDYYTLLGCDE-------------------------LSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEI 72 (112)
T ss_dssp CCCCHHHHTTCCT-------------------------TSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHH
Confidence 4568999999994 7899999999999999999999863 78999999999999
Q ss_pred hhccccCCCCCChhhHHhhhhhhcccccccCCccC
Q 000056 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDVLE 1612 (2526)
Q Consensus 1578 Lsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l~ 1612 (2526)
|+|+. +|..||++|....
T Consensus 73 L~d~~-----------------~R~~YD~~~~~~~ 90 (112)
T 2ctq_A 73 LTNEE-----------------SRARYDHWRRSQM 90 (112)
T ss_dssp HHSHH-----------------HHHHHHHHHHHTC
T ss_pred HCCHH-----------------HHHHHHHhhhhcc
Confidence 99975 6778888876543
No 15
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.13 E-value=2.1e-11 Score=125.01 Aligned_cols=65 Identities=35% Similarity=0.694 Sum_probs=57.5
Q ss_pred HHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHHhh
Q 000056 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1504 ~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEvLs 1579 (2526)
++|+||||++ +++.++||+|||+|+++|||||+++ +.++|+.|++||++|+
T Consensus 3 d~Y~iLgv~~-------------------------~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~ 57 (99)
T 2lgw_A 3 SYYEILDVPR-------------------------SASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLS 57 (99)
T ss_dssp CHHHHSSSCT-------------------------TSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHC
Confidence 5899999994 7899999999999999999999975 5789999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|+. +|..||++|..
T Consensus 58 d~~-----------------~R~~YD~~g~~ 71 (99)
T 2lgw_A 58 DKH-----------------KREIYDRYGRE 71 (99)
T ss_dssp SHH-----------------HHHHHHHHHHC
T ss_pred CHH-----------------HHHHHHHhCcc
Confidence 965 67788888754
No 16
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.12 E-value=2e-11 Score=123.63 Aligned_cols=59 Identities=29% Similarity=0.494 Sum_probs=52.5
Q ss_pred CCChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC---------chHHHHH
Q 000056 1499 DLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---------EGREKFL 1569 (2526)
Q Consensus 1499 ~~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp---------~a~ekF~ 1569 (2526)
.+...++|+||||++ +++.++||+|||+|+++|||||++ ++.++|+
T Consensus 12 ~~~~~~~y~iLgv~~-------------------------~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~ 66 (94)
T 1wjz_A 12 QTLKKDWYSILGADP-------------------------SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFI 66 (94)
T ss_dssp SSSCSCHHHHTTCCT-------------------------TCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHH
T ss_pred cCCCCChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHH
Confidence 355678999999994 789999999999999999999986 3678999
Q ss_pred HHHHHHHHhhccc
Q 000056 1570 AVQKAYERLQATM 1582 (2526)
Q Consensus 1570 ~I~~AYEvLsd~~ 1582 (2526)
.|++||++|+|+.
T Consensus 67 ~i~~Ay~~L~d~~ 79 (94)
T 1wjz_A 67 EIDQAWKILGNEE 79 (94)
T ss_dssp HHHHHHHHHSSSS
T ss_pred HHHHHHHHHCCHH
Confidence 9999999999975
No 17
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.12 E-value=4.9e-11 Score=117.47 Aligned_cols=58 Identities=14% Similarity=0.305 Sum_probs=50.6
Q ss_pred ChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhhc
Q 000056 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQA 1580 (2526)
Q Consensus 1501 s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLsd 1580 (2526)
..+++|++|||+++ ..++.++||+|||+|+++|||||+++ .++|++|++||++|+|
T Consensus 9 ~~~~~y~iLgl~~~-----------------------~~a~~~eIk~aYr~la~~~HPDk~~~-~~~f~~i~~AYe~L~~ 64 (79)
T 1faf_A 9 DKERLLELLKLPRQ-----------------------LWGDFGRMQQAYKQQSLLLHPDKGGS-HALMQELNSLWGTFKT 64 (79)
T ss_dssp HHHHHHHHHTCCSS-----------------------STTCHHHHHHHHHHHHHHSSGGGSCC-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCCC-----------------------CCCCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHHhh
Confidence 35789999999952 12899999999999999999999875 6899999999999999
Q ss_pred cc
Q 000056 1581 TM 1582 (2526)
Q Consensus 1581 ~~ 1582 (2526)
+.
T Consensus 65 ~~ 66 (79)
T 1faf_A 65 EV 66 (79)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 18
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.11 E-value=2.4e-11 Score=127.50 Aligned_cols=55 Identities=18% Similarity=0.382 Sum_probs=49.3
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCH--HHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhh
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDE--EKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e--~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLs 1579 (2526)
..++|+||||++ +++. ++||+|||+|+++|||||+++ .++|++|++||++|+
T Consensus 7 ~~~~Y~iLgv~~-------------------------~as~~~~eIk~aYr~la~~~HPDk~~~-~e~f~~I~~AYevL~ 60 (114)
T 1gh6_A 7 SLQLMDLLGLER-------------------------SAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKME 60 (114)
T ss_dssp HHHHHHHTTCCT-------------------------TSCSCHHHHHHHHHHTTTTCCTTTCCT-TTTTHHHHHHHHHHH
T ss_pred hhhHHHHcCCCC-------------------------CCCcCHHHHHHHHHHHHHHHCCCCCcc-HHHHHHHHHHHHHHC
Confidence 457999999995 4555 999999999999999999987 689999999999999
Q ss_pred ccc
Q 000056 1580 ATM 1582 (2526)
Q Consensus 1580 d~~ 1582 (2526)
|+.
T Consensus 61 d~~ 63 (114)
T 1gh6_A 61 DGV 63 (114)
T ss_dssp HHH
T ss_pred CHH
Confidence 976
No 19
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.10 E-value=9e-11 Score=113.34 Aligned_cols=60 Identities=25% Similarity=0.337 Sum_probs=53.0
Q ss_pred CCCChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHH
Q 000056 1498 MDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYER 1577 (2526)
Q Consensus 1498 ~~~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEv 1577 (2526)
..|+.+++|+||||++ .+++.++||++||+|+++|||||++ ..++|++|++||++
T Consensus 9 ~~m~~~~~y~iLgl~~------------------------~~a~~~eIk~ayr~l~~~~HPDk~g-~~~~f~~i~~Aye~ 63 (71)
T 2guz_A 9 PKMNSKEALQILNLTE------------------------NTLTKKKLKEVHRKIMLANHPDKGG-SPFLATKINEAKDF 63 (71)
T ss_dssp SSCCHHHHHHHTTCCT------------------------TTCCHHHHHHHHHHHHHHHCGGGTC-CHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCCC------------------------CCCCHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHH
Confidence 4578899999999994 1579999999999999999999974 46799999999999
Q ss_pred hhccc
Q 000056 1578 LQATM 1582 (2526)
Q Consensus 1578 Lsd~~ 1582 (2526)
|+++.
T Consensus 64 L~~~~ 68 (71)
T 2guz_A 64 LEKRG 68 (71)
T ss_dssp HHHHC
T ss_pred Hhhhh
Confidence 99864
No 20
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.05 E-value=2.6e-11 Score=125.01 Aligned_cols=66 Identities=36% Similarity=0.713 Sum_probs=58.0
Q ss_pred HHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC---chHHHHHHHHHHHHHhhc
Q 000056 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERLQA 1580 (2526)
Q Consensus 1504 ~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEvLsd 1580 (2526)
++|+||||++ +++.++||+|||+|+++|||||++ +++++|+.|++||++|+|
T Consensus 4 ~~y~iLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d 58 (103)
T 1bq0_A 4 DYYEILGVSK-------------------------TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTD 58 (103)
T ss_dssp CSTTTTSSCS-------------------------SCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTC
T ss_pred CHHHHcCcCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence 5799999984 789999999999999999999986 478899999999999999
Q ss_pred cccCCCCCChhhHHhhhhhhcccccccCCcc
Q 000056 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDVL 1611 (2526)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l 1611 (2526)
+. +|..||++|...
T Consensus 59 ~~-----------------~R~~YD~~~~~~ 72 (103)
T 1bq0_A 59 SQ-----------------KRAAYDQYGHAA 72 (103)
T ss_dssp SH-----------------HHHHTTTSTTTS
T ss_pred HH-----------------HHHHHHHHhhhh
Confidence 75 577788888654
No 21
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.03 E-value=7.4e-11 Score=122.77 Aligned_cols=67 Identities=34% Similarity=0.517 Sum_probs=58.1
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCC-CHHHHHHHHHHHHHHHCCCCCCc------hHHHHHHHHHH
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENI-DEEKLKRQYRKLAMKYHPDKNPE------GREKFLAVQKA 1574 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a-~e~~IKkAYRkLa~k~HPDKnp~------a~ekF~~I~~A 1574 (2526)
..++|++|||++ ++ +.++||+|||+|+++|||||+++ +.++|+.|++|
T Consensus 14 ~~~~y~iLgv~~-------------------------~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~A 68 (109)
T 2qsa_A 14 LENCYDVLEVNR-------------------------EEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATA 68 (109)
T ss_dssp TSCHHHHTTCCG-------------------------GGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHcCCCC-------------------------CCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHH
Confidence 457999999994 57 99999999999999999999974 67899999999
Q ss_pred HHHhhccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1575 YERLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1575 YEvLsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|++|+|+. +|..||+++..
T Consensus 69 Y~~L~d~~-----------------~R~~YD~~~~~ 87 (109)
T 2qsa_A 69 YETLKDDE-----------------AKTNYDYYLDH 87 (109)
T ss_dssp HHHHHSHH-----------------HHHHHHHHHHC
T ss_pred HHHHCCHH-----------------HHHHHHHhccC
Confidence 99999975 56678877754
No 22
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.03 E-value=4.3e-11 Score=120.86 Aligned_cols=43 Identities=23% Similarity=0.491 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCc------hHHHHHHHHHHHHHhhc
Q 000056 1538 ENIDEEKLKRQYRKLAMKYHPDKNPE------GREKFLAVQKAYERLQA 1580 (2526)
Q Consensus 1538 ~~a~e~~IKkAYRkLa~k~HPDKnp~------a~ekF~~I~~AYEvLsd 1580 (2526)
+.+++++|||||||+|++||||||++ ++++|+.|++|||+|.+
T Consensus 43 ~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 43 DLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp GSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999974 57899999999999986
No 23
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.01 E-value=5.3e-11 Score=132.78 Aligned_cols=67 Identities=16% Similarity=0.337 Sum_probs=54.7
Q ss_pred hHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhhcc
Q 000056 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQAT 1581 (2526)
Q Consensus 1502 ~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLsd~ 1581 (2526)
..++|++|||+++. +.+.++||+|||++|++|||||+++ .++|++|++||++|+|+
T Consensus 10 ~~d~Y~vLGl~~~a-----------------------s~~~~eIKkAYRkLa~~~HPDk~~~-~e~F~~I~~AYevLsdp 65 (174)
T 2pf4_E 10 SLQLMDLLGLERSA-----------------------WGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDG 65 (174)
T ss_dssp HHHHHHTTTCCGGG-----------------------TTCHHHHHHHHHHHGGGCSCC---C-CTTTTHHHHHHHHHHHH
T ss_pred cccHHHHcCCCCCC-----------------------CcCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHhCCH
Confidence 46899999999522 2236999999999999999999987 58999999999999996
Q ss_pred ccCCCCCChhhHHhhhhhhcccccccCC
Q 000056 1582 MQGLQGPQPWRLLLLLKGQCILYRRYGD 1609 (2526)
Q Consensus 1582 ~~r~~~p~~~~~~liLr~qr~~Ydr~g~ 1609 (2526)
. +|..||+||.
T Consensus 66 ~-----------------kR~~YD~~G~ 76 (174)
T 2pf4_E 66 V-----------------KYAHQPDFGG 76 (174)
T ss_dssp H-----------------HHHTSCGGGG
T ss_pred H-----------------HHHHHhccCC
Confidence 5 6778999996
No 24
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=98.99 E-value=1.9e-10 Score=131.42 Aligned_cols=67 Identities=31% Similarity=0.598 Sum_probs=59.2
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC---chHHHHHHHHHHHHHhh
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEvLs 1579 (2526)
.++|++||+++ +++.++||+|||+|+++|||||++ ++.++|+.|++||++|+
T Consensus 2 ~~~y~~l~~~~-------------------------~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~ 56 (210)
T 3apq_A 2 QNFYSLLGVSK-------------------------TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLK 56 (210)
T ss_dssp CCHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHT
T ss_pred CCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhC
Confidence 36899999994 789999999999999999999996 47899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhhcccccccCCcc
Q 000056 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDVL 1611 (2526)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l 1611 (2526)
|+. +|..||+||+..
T Consensus 57 ~~~-----------------~r~~yd~~~~~~ 71 (210)
T 3apq_A 57 DED-----------------LRKKYDKYGEKG 71 (210)
T ss_dssp SHH-----------------HHHHHHHHTTTT
T ss_pred CHH-----------------HHHHHHHhcccc
Confidence 965 677899998653
No 25
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.96 E-value=6.2e-11 Score=144.93 Aligned_cols=63 Identities=29% Similarity=0.454 Sum_probs=0.0
Q ss_pred CCCChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHH
Q 000056 1498 MDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAY 1575 (2526)
Q Consensus 1498 ~~~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AY 1575 (2526)
..|+..++|++|||++ +++.++||+|||+||++||||||+ +++++|++|++||
T Consensus 23 ~~m~~~d~Y~vLgv~~-------------------------~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay 77 (329)
T 3lz8_A 23 NAMELKDYYAILGVQP-------------------------TDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAW 77 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCHHHHcCcCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHH
Confidence 3467789999999994 789999999999999999999986 4789999999999
Q ss_pred HHhhccccCC
Q 000056 1576 ERLQATMQGL 1585 (2526)
Q Consensus 1576 EvLsd~~~r~ 1585 (2526)
|+|+|+..|.
T Consensus 78 ~vL~d~~~R~ 87 (329)
T 3lz8_A 78 EVLKDEQRRA 87 (329)
T ss_dssp ----------
T ss_pred HHhhhhhhhc
Confidence 9999986333
No 26
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=98.92 E-value=4.8e-10 Score=123.55 Aligned_cols=64 Identities=25% Similarity=0.431 Sum_probs=54.2
Q ss_pred CChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---------hHHHHHH
Q 000056 1500 LSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---------GREKFLA 1570 (2526)
Q Consensus 1500 ~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~---------a~ekF~~ 1570 (2526)
+...++|+||||++ +++.++||+|||+|+++|||||++. +.++|+.
T Consensus 7 ~~~~~~y~iLgv~~-------------------------~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~ 61 (155)
T 2l6l_A 7 MPKKDWYSILGADP-------------------------SANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIE 61 (155)
T ss_dssp CCCSHHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHH
T ss_pred CCCCChhHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHH
Confidence 45568999999994 7789999999999999999999864 3589999
Q ss_pred HHHHHHHhhccccCCCCC
Q 000056 1571 VQKAYERLQATMQGLQGP 1588 (2526)
Q Consensus 1571 I~~AYEvLsd~~~r~~~p 1588 (2526)
|++||++|+||..|..|+
T Consensus 62 i~~Ay~~L~dp~~R~~Yd 79 (155)
T 2l6l_A 62 IDQAWKILGNEETKREYD 79 (155)
T ss_dssp HHHHHHHSSSHHHHCHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 999999999986444333
No 27
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=98.91 E-value=1.3e-10 Score=120.43 Aligned_cols=44 Identities=20% Similarity=0.450 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCc----------hHHHHHHHHHHHHHhhccc
Q 000056 1539 NIDEEKLKRQYRKLAMKYHPDKNPE----------GREKFLAVQKAYERLQATM 1582 (2526)
Q Consensus 1539 ~a~e~~IKkAYRkLa~k~HPDKnp~----------a~ekF~~I~~AYEvLsd~~ 1582 (2526)
.++.++||+||||++++||||||++ +.++|+.|++||++|+|+.
T Consensus 51 ~As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 51 MIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 4899999999999999999999862 4789999999999999963
No 28
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=98.82 E-value=6.7e-10 Score=124.74 Aligned_cols=58 Identities=24% Similarity=0.389 Sum_probs=51.2
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc------hHHHHHHHHHHHH
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE------GREKFLAVQKAYE 1576 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~------a~ekF~~I~~AYE 1576 (2526)
+++|++|||+. +++.++||+|||+++++|||||+++ +.++|+.|++||+
T Consensus 117 ~d~Y~vLgv~~-------------------------~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYe 171 (182)
T 1n4c_A 117 ETKWKPVGMAD-------------------------LVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWS 171 (182)
T ss_dssp CCCCCCCCGGG-------------------------GSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHH
Confidence 57899999984 7899999999999999999999864 5789999999999
Q ss_pred HhhccccCC
Q 000056 1577 RLQATMQGL 1585 (2526)
Q Consensus 1577 vLsd~~~r~ 1585 (2526)
+|+|+..|.
T Consensus 172 vLsD~~kR~ 180 (182)
T 1n4c_A 172 EFENQGQKP 180 (182)
T ss_dssp HHHHHHSSC
T ss_pred HHCCHHhhh
Confidence 999986443
No 29
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=98.78 E-value=3.5e-09 Score=121.77 Aligned_cols=57 Identities=23% Similarity=0.387 Sum_probs=49.1
Q ss_pred HHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHH
Q 000056 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKA 1574 (2526)
Q Consensus 1503 ~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~--------a~ekF~~I~~A 1574 (2526)
.++|++|||+++ -++|..+||++||+|+++|||||+++ +.++|+.|++|
T Consensus 43 ~d~y~lLgv~~~-----------------------~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~A 99 (207)
T 3bvo_A 43 RDYFSLMDCNRS-----------------------FRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDA 99 (207)
T ss_dssp CCHHHHTTSCSC-----------------------SCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHcCCCCC-----------------------CCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 368999999952 15789999999999999999999863 34689999999
Q ss_pred HHHhhccc
Q 000056 1575 YERLQATM 1582 (2526)
Q Consensus 1575 YEvLsd~~ 1582 (2526)
|++|+||.
T Consensus 100 Y~vLsdp~ 107 (207)
T 3bvo_A 100 YKTLLAPL 107 (207)
T ss_dssp HHHHHSHH
T ss_pred HHHHCCHH
Confidence 99999975
No 30
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=98.76 E-value=4e-09 Score=118.14 Aligned_cols=56 Identities=18% Similarity=0.431 Sum_probs=48.0
Q ss_pred HHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHHH
Q 000056 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKAY 1575 (2526)
Q Consensus 1504 ~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~--------a~ekF~~I~~AY 1575 (2526)
++|++||++++ -+.|..+||++||+|+++|||||+++ +.++|+.|++||
T Consensus 2 d~y~lLgl~~~-----------------------a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY 58 (171)
T 1fpo_A 2 DYFTLFGLPAR-----------------------YQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAW 58 (171)
T ss_dssp HHHHHTTCCSS-----------------------SCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHCCCCCC-----------------------CCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 58999999952 13399999999999999999999874 346899999999
Q ss_pred HHhhccc
Q 000056 1576 ERLQATM 1582 (2526)
Q Consensus 1576 EvLsd~~ 1582 (2526)
++|+||.
T Consensus 59 ~vL~dp~ 65 (171)
T 1fpo_A 59 QTLRHPL 65 (171)
T ss_dssp HHHHSHH
T ss_pred HHHcCch
Confidence 9999975
No 31
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=98.69 E-value=6.9e-09 Score=116.51 Aligned_cols=56 Identities=20% Similarity=0.452 Sum_probs=48.4
Q ss_pred HHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHHH
Q 000056 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKAY 1575 (2526)
Q Consensus 1504 ~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~--------a~ekF~~I~~AY 1575 (2526)
++|++|||+++. +.|..+||++||+|+++|||||+++ +.++|..|++||
T Consensus 5 d~Y~iLgl~~~a-----------------------~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY 61 (174)
T 3hho_A 5 NYFELFGLPIQF-----------------------ELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAY 61 (174)
T ss_dssp CHHHHTTCCSSS-----------------------CCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHcCcCCCC-----------------------CCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 689999999521 3459999999999999999999863 457999999999
Q ss_pred HHhhccc
Q 000056 1576 ERLQATM 1582 (2526)
Q Consensus 1576 EvLsd~~ 1582 (2526)
++|+||.
T Consensus 62 ~vL~dp~ 68 (174)
T 3hho_A 62 QTLKDPL 68 (174)
T ss_dssp HHHHSHH
T ss_pred HHHcChH
Confidence 9999975
No 32
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.67 E-value=5.2e-06 Score=103.20 Aligned_cols=326 Identities=12% Similarity=0.122 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHHh--hCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcC-ChhHHHHHHhhcchHHHHH
Q 000056 2026 LQFGLTSLQNILT--SNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLL 2102 (2526)
Q Consensus 2026 l~maL~AL~nLL~--~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaiA~~~~vl~~Ll 2102 (2526)
...++.+|++++. .+|.....+...+-++.|..+|... .++.++..+..+|..++. +.+....+...+ ++..|+
T Consensus 37 r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~ 113 (450)
T 2jdq_A 37 QLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRK--ENCTLQFESAWVLTNIASGNSLQTRIVIQAG-AVPIFI 113 (450)
T ss_dssp HHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCT--TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCC-CHHHHH
Confidence 4578889999886 4665544333336788888888753 246789999999988876 456666666544 788899
Q ss_pred HHHhh-CcchHHHHHHHHHHhhcch-HHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHH
Q 000056 2103 QMLHY-APACREGVLHVLYALASTP-ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAIT 2180 (2526)
Q Consensus 2103 ~lL~~-~p~~~~~vL~~L~aL~s~t-~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~ 2180 (2526)
.+|.+ .++.+..++.+|..++... +.....+..|++..|+.++.++ .+..+|..++..|+.+..+.-..++...
T Consensus 114 ~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~- 189 (450)
T 2jdq_A 114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ---NRLTMTRNAVWALSNLCRGKSPPPEFAK- 189 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC---CCHHHHHHHHHHHHHHHCCSSSCCCGGG-
T ss_pred HHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC---CCHHHHHHHHHHHHHHhCCCCCCCCHHH-
Confidence 88875 4566777999999999754 5666667889999999999742 3688999999999999975321111111
Q ss_pred HHhhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccC
Q 000056 2181 LARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMR 2260 (2526)
Q Consensus 2181 L~KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~ 2260 (2526)
...++| .++..+++. +++.|......+..++.. . ++.
T Consensus 190 ~~~~l~-~L~~~l~~~--------------------~~~v~~~a~~~L~~l~~~--------~------~~~-------- 226 (450)
T 2jdq_A 190 VSPCLN-VLSWLLFVS--------------------DTDVLADACWALSYLSDG--------P------NDK-------- 226 (450)
T ss_dssp TGGGHH-HHHHHTTCC--------------------CHHHHHHHHHHHHHHTSS--------S------HHH--------
T ss_pred HHHHHH-HHHHHHccC--------------------CHHHHHHHHHHHHHHHCC--------C------cHH--------
Confidence 122332 233333321 244566666666555321 0 000
Q ss_pred CCcEEeeeeehhhccCCCCCCCChHHHH-HHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCC
Q 000056 2261 DEPQVGGIYVRLFLKDPKFPLRNPKRFL-EGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLG 2339 (2526)
Q Consensus 2261 ~El~VGGVYlRLFl~nP~w~LR~PK~FL-~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG 2339 (2526)
.+.+. .+++..++..+... |.++..-...++..|....+.....+...|
T Consensus 227 -----------------------~~~~~~~~~i~~L~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 276 (450)
T 2jdq_A 227 -----------------------IQAVIDAGVCRRLVELLMHN-------DYKVVSPALRAVGNIVTGDDIQTQVILNCS 276 (450)
T ss_dssp -----------------------HHHHHHTTTHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTT
T ss_pred -----------------------HHHHHHcCcHHHHHHHHCCC-------chhHHHHHHHHHHHHhhCChHHHHHHHHCc
Confidence 01111 13555566655431 233445556677777777777777777889
Q ss_pred ChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhC-ChhHHHHHhhcCCCC
Q 000056 2340 YVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGT 2418 (2526)
Q Consensus 2340 ~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~-s~~Cv~ala~~~~~~ 2418 (2526)
.+|.|+..|.+.+ +.++..|+..|..|+. +....+.+...
T Consensus 277 ~l~~L~~ll~~~~-----------------------------------~~vr~~a~~~L~~l~~~~~~~~~~~~~~---- 317 (450)
T 2jdq_A 277 ALQSLLHLLSSPK-----------------------------------ESIKKEACWTISNITAGNRAQIQTVIDA---- 317 (450)
T ss_dssp HHHHHHHHTTCSS-----------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHT----
T ss_pred cHHHHHHHHcCCC-----------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHC----
Confidence 9999999987532 3688999999999995 66777777654
Q ss_pred CcchHHHHHHhhccCch--HhHHHHHHHHHhcCCccchHHHHHHHhhCcHHHHHHhcc
Q 000056 2419 PQVVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2419 ~~~v~~l~~a~~~~~~~--~la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
.++|.|++.+...... ..||.+|..+...+ .++.+.+.++.|++|.|+.+|+
T Consensus 318 -~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~l~~~~~i~~L~~ll~ 371 (450)
T 2jdq_A 318 -NIFPALISILQTAEFRTRKEAAWAITNATSGG---SAEQIKYLVELGCIKPLCDLLT 371 (450)
T ss_dssp -THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHTCHHHHHHGGG
T ss_pred -CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC---CHHHHHHHHHCCCHHHHHHHhc
Confidence 3499999998875433 38999999998743 2445666778899999999995
No 33
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=98.66 E-value=3.8e-09 Score=119.22 Aligned_cols=45 Identities=31% Similarity=0.629 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhhccc
Q 000056 1538 ENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQATM 1582 (2526)
Q Consensus 1538 ~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLsd~~ 1582 (2526)
.++|..+||++||+|+++|||||++++.++|+.|++||++|+||.
T Consensus 28 ~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~ 72 (181)
T 3uo3_A 28 WTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPL 72 (181)
T ss_dssp SCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHH
T ss_pred CCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChH
Confidence 378999999999999999999999988899999999999999975
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.52 E-value=3.9e-05 Score=98.41 Aligned_cols=327 Identities=11% Similarity=0.108 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHhhCc-cchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCC-hhHHHHHHhhcchHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNP-NLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTC-ASCLEAMVADGSSLLLLLQ 2103 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP-~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n-~~CVeaiA~~~~vl~~Ll~ 2103 (2526)
...++.+|.+++...+ .....+...+.++.|..+|... +++.++..|+.+|..++.. ..+...+...+ ++..|+.
T Consensus 91 ~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g-~i~~L~~ 167 (528)
T 4b8j_A 91 QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE--DFPQLQFEAAWALTNIASGTSENTKVVIDHG-AVPIFVK 167 (528)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT--TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC--CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCC-cHHHHHH
Confidence 3467889999988765 3334455668889999999753 2367899999999888764 77777777654 7888999
Q ss_pred HHhh-CcchHHHHHHHHHHhhcc-hHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHH
Q 000056 2104 MLHY-APACREGVLHVLYALAST-PELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITL 2181 (2526)
Q Consensus 2104 lL~~-~p~~~~~vL~~L~aL~s~-t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L 2181 (2526)
+|.. .++.+..++.+|..++.. +......+..|++..|+.+|..+ .+..+|..++..|..+.... ..++. ...
T Consensus 168 lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~---~~~~v~~~a~~~L~~L~~~~-~~~~~-~~~ 242 (528)
T 4b8j_A 168 LLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH---TKLSMLRNATWTLSNFCRGK-PQPSF-EQT 242 (528)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT---CCHHHHHHHHHHHHHHHCSS-SCCCH-HHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcCC-CCCcH-HHH
Confidence 8875 445667788999998865 45666677889999999999543 36889999999999998865 12221 112
Q ss_pred HhhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccCC
Q 000056 2182 ARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRD 2261 (2526)
Q Consensus 2182 ~KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~ 2261 (2526)
...+| ..+.++.+ . +.+.+......+..++.. ++... .
T Consensus 243 ~~~l~-------------~L~~lL~~--~------~~~v~~~a~~aL~~l~~~---------------~~~~~--~---- 280 (528)
T 4b8j_A 243 RPALP-------------ALARLIHS--N------DEEVLTDACWALSYLSDG---------------TNDKI--Q---- 280 (528)
T ss_dssp TTHHH-------------HHHHHTTC--C------CHHHHHHHHHHHHHHTSS---------------CHHHH--H----
T ss_pred HHHHH-------------HHHHHHCC--C------CHHHHHHHHHHHHHHHcC---------------CHHHH--H----
Confidence 22221 23334422 1 344555655555544321 00000 0
Q ss_pred CcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCCh
Q 000056 2262 EPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYV 2341 (2526)
Q Consensus 2262 El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~l 2341 (2526)
.+ +-.+++..++..+... ++++..-...++..|....+.....+-..|.+
T Consensus 281 ----------~~-------------~~~g~v~~Lv~lL~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l 330 (528)
T 4b8j_A 281 ----------AV-------------IEAGVCPRLVELLLHP-------SPSVLIPALRTVGNIVTGDDAQTQCIIDHQAL 330 (528)
T ss_dssp ----------HH-------------HHTTCHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHH
T ss_pred ----------HH-------------HHcCHHHHHHHHHcCC-------ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhH
Confidence 00 1113566666666543 12333444556666666677777778888999
Q ss_pred HHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhC-ChhHHHHHhhcCCCCCc
Q 000056 2342 PKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGTPQ 2420 (2526)
Q Consensus 2342 pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~-s~~Cv~ala~~~~~~~~ 2420 (2526)
|.|+..|.+.. .+.+++.|..+|..|+. +..++..+...+.
T Consensus 331 ~~L~~lL~~~~----------------------------------~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~---- 372 (528)
T 4b8j_A 331 PCLLSLLTQNL----------------------------------KKSIKKEACWTISNITAGNKDQIQAVINAGI---- 372 (528)
T ss_dssp HHHHHHHHSCC----------------------------------CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTC----
T ss_pred HHHHHHHcCCC----------------------------------cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC----
Confidence 99999998531 13578899999998885 6677777776544
Q ss_pred chHHHHHHhhccCch--HhHHHHHHHHHhcCCccchHHHHHHHhhCcHHHHHHhcc
Q 000056 2421 VVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2421 ~v~~l~~a~~~~~~~--~la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
+|.|++.+...... ..|+.+|..+...+ .+.....-++.|.|+.|+.+|+
T Consensus 373 -i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~~~~i~~L~~lL~ 424 (528)
T 4b8j_A 373 -IGPLVNLLQTAEFDIKKEAAWAISNATSGG---SHDQIKYLVSEGCIKPLCDLLI 424 (528)
T ss_dssp -HHHHHHHHHHSCHHHHHHHHHHHHHHHHHS---CHHHHHHHHHTTCHHHHHHGGG
T ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHHHcCC---CHHHHHHHHHCCCHHHHHHHHc
Confidence 99999999875433 38999999998853 2455666678899999999995
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.50 E-value=3.8e-05 Score=98.84 Aligned_cols=326 Identities=13% Similarity=0.129 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHhh--CccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcC-ChhHHHHHHhhcchHHHHH
Q 000056 2026 LQFGLTSLQNILTS--NPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLL 2102 (2526)
Q Consensus 2026 l~maL~AL~nLL~~--nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaiA~~~~vl~~Ll 2102 (2526)
...++.+|.+++.. +|... .+...+.++.|+.+|... +++.++..|+.+|..++. +..+...+...+ ++..|+
T Consensus 104 ~~~A~~~L~~ll~~~~~~~~~-~~~~~g~i~~Lv~~L~~~--~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g-~i~~Lv 179 (530)
T 1wa5_B 104 QLSATVKFRQILSREHRPPID-VVIQAGVVPRLVEFMREN--QPEMLQLEAAWALTNIASGTSAQTKVVVDAD-AVPLFI 179 (530)
T ss_dssp HHHHHHHHHHHTCCSSSCSHH-HHHHTTCHHHHHHTTSTT--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccHH-HHHHCCCHHHHHHHhCCC--CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCC-CHHHHH
Confidence 45678899999875 34332 344567888999998753 246799999999988876 456777776644 788888
Q ss_pred HHHhh-CcchHHHHHHHHHHhhcc-hHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHH
Q 000056 2103 QMLHY-APACREGVLHVLYALAST-PELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAIT 2180 (2526)
Q Consensus 2103 ~lL~~-~p~~~~~vL~~L~aL~s~-t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~ 2180 (2526)
.+|.. .++.+..++.+|..++.. ++.....+..|++..|+.+|.. .+..+|..++..|+.+..+.- |.....
T Consensus 180 ~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~--~~~~~~ 253 (530)
T 1wa5_B 180 QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS----NKPSLIRTATWTLSNLCRGKK--PQPDWS 253 (530)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS----CCHHHHHHHHHHHHHHHCCSS--SCCCHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc----CCHHHHHHHHHHHHHHhCCCC--CCCcHH
Confidence 88875 456677899999999975 4666677889999999999975 367899999999999987531 222122
Q ss_pred HHhhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccC
Q 000056 2181 LARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMR 2260 (2526)
Q Consensus 2181 L~KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~ 2260 (2526)
...-+-+.++..+.+. +.+.|......+..++.. . |+..
T Consensus 254 ~~~~~l~~L~~lL~~~--------------------d~~v~~~a~~~L~~L~~~--------~------~~~~------- 292 (530)
T 1wa5_B 254 VVSQALPTLAKLIYSM--------------------DTETLVDACWAISYLSDG--------P------QEAI------- 292 (530)
T ss_dssp HHGGGHHHHHHHTTCC--------------------CHHHHHHHHHHHHHHHSS--------C------HHHH-------
T ss_pred HHHhHHHHHHHHHcCC--------------------CHHHHHHHHHHHHHHhCC--------C------HHHH-------
Confidence 2222222333333221 245666666666665421 0 0000
Q ss_pred CCcEEeeeeehhhccCCCCCCCChHHHHH-HHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCC
Q 000056 2261 DEPQVGGIYVRLFLKDPKFPLRNPKRFLE-GLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLG 2339 (2526)
Q Consensus 2261 ~El~VGGVYlRLFl~nP~w~LR~PK~FL~-~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG 2339 (2526)
+.++. +++..++..+... +.++..-...++..|....+.....+-..|
T Consensus 293 ------------------------~~~~~~~~v~~Lv~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 341 (530)
T 1wa5_B 293 ------------------------QAVIDVRIPKRLVELLSHE-------STLVQTPALRAVGNIVTGNDLQTQVVINAG 341 (530)
T ss_dssp ------------------------HHHHHTTCHHHHHHGGGCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred ------------------------HHHHhcCcHHHHHHHHCCC-------ChhhHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 11111 3445555555431 223334445566666666666666777789
Q ss_pred ChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhC-ChhHHHHHhhcCCCC
Q 000056 2340 YVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGT 2418 (2526)
Q Consensus 2340 ~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~-s~~Cv~ala~~~~~~ 2418 (2526)
.+|.|+..|.+.+ +.+++.|+..|..|+. +..+.+.+...+
T Consensus 342 ~l~~L~~lL~~~~-----------------------------------~~vr~~A~~aL~~l~~~~~~~~~~~~~~~--- 383 (530)
T 1wa5_B 342 VLPALRLLLSSPK-----------------------------------ENIKKEACWTISNITAGNTEQIQAVIDAN--- 383 (530)
T ss_dssp HHHHHHHHTTCSC-----------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTT---
T ss_pred hHHHHHHHHcCCC-----------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHCC---
Confidence 9999999887532 3688999999999985 667777776543
Q ss_pred CcchHHHHHHhhccCch--HhHHHHHHHHHhcCCccchHHHHHHHhhCcHHHHHHhcc
Q 000056 2419 PQVVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2419 ~~~v~~l~~a~~~~~~~--~la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
++|.|++.+...... ..|+.+|..+...+.. .+..+...++.|.++.|+.+|+
T Consensus 384 --~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~l~~~~~l~~L~~ll~ 438 (530)
T 1wa5_B 384 --LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ-RPDIIRYLVSQGCIKPLCDLLE 438 (530)
T ss_dssp --CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT-CTHHHHHHHHTTCHHHHHHHTT
T ss_pred --CHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHCCCHHHHHHHHh
Confidence 499999998765433 3899999999885321 1145666678899999999994
No 36
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.49 E-value=1.6e-08 Score=136.56 Aligned_cols=68 Identities=31% Similarity=0.639 Sum_probs=37.1
Q ss_pred ChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCC---chHHHHHHHHHHHHH
Q 000056 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYER 1577 (2526)
Q Consensus 1501 s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEv 1577 (2526)
...++|++||++ ++++.++||+|||+|+++|||||++ ++.++|++|++||++
T Consensus 19 ~~~~~y~~lg~~-------------------------~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~ 73 (780)
T 3apo_A 19 HDQNFYSLLGVS-------------------------KTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEV 73 (780)
T ss_dssp ----CHHHHTCC-------------------------TTCCHHHHHHHHCC-----------------------CTHHHH
T ss_pred CCCCHHHHcCCC-------------------------CCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHH
Confidence 356899999999 4789999999999999999999985 468899999999999
Q ss_pred hhccccCCCCCChhhHHhhhhhhcccccccCCc
Q 000056 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2526)
Q Consensus 1578 Lsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2526)
|+|+. +|..||+||+.
T Consensus 74 L~~~~-----------------~r~~yd~~~~~ 89 (780)
T 3apo_A 74 LKDED-----------------LRKKYDKYGEK 89 (780)
T ss_dssp HHSHH-----------------HHHHHTTC---
T ss_pred HcChH-----------------HHHHHHhhccc
Confidence 99975 57778888864
No 37
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.39 E-value=0.00013 Score=99.11 Aligned_cols=514 Identities=17% Similarity=0.095 Sum_probs=285.9
Q ss_pred chhhHHHhcCHHHHHHHHHHhhhcccCCCCCCCccceeehhhhhhhhhhccChHHHHHHHhhcchHHHHHHhhccccchh
Q 000056 1661 NGEELVRDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCTELELVPG 1740 (2526)
Q Consensus 1661 NaeeL~re~G~~~L~~~lsrC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l~l~~~~~ 1740 (2526)
|..++ ..|+++.|..++.. . ...|-.+++.++..++....++..+...++++..+++.|.-...+.
T Consensus 143 ~~~~i-~~g~ip~Lv~lL~~-----------~--d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~ 208 (780)
T 2z6g_A 143 DDAEL-ATRAIPELTKLLND-----------E--DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 208 (780)
T ss_dssp HHHHH-HHHHHHHHHHHHHC-----------S--CHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHH
T ss_pred hHHHH-HhCCHHHHHHHHCC-----------C--CHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHH
Confidence 33344 36777777776651 1 1234457788888888888888888888888888888886555678
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHhccHHHHHHHhhcCCCcccccCccccccccccHHHHHHHHHHHHHHHHHHhhCcCC
Q 000056 1741 AVDAALQTIAHVSVSSELQDALLKAGALWFLLPLLLQYDSTAEKSDTNESHGVGASVQIAKNMHAVRAAQALSRLSGLCS 1820 (2526)
Q Consensus 1741 l~~aALe~v~~~a~~~elq~~i~~~GVLw~LL~lLf~YD~Tlees~le~~~~~~~~~qivkn~lAk~a~~aL~~L~g~~~ 1820 (2526)
++..|+.++..++.+.+.+..+.+.|++-.|+.+|-..+ ... -..|+.+|..|....
T Consensus 209 vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~-----------------~~v-----~~~A~~aL~nLa~~~- 265 (780)
T 2z6g_A 209 TARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPV-----------------DSV-----LFHAITTLHNLLLHQ- 265 (780)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSC-----------------HHH-----HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCC-----------------HHH-----HHHHHHHHHHHhCCC-
Confidence 999999999999999999999999999988888874311 111 223556666664311
Q ss_pred CCCCCCccHHHHHHH-HHhchHHHHHHhhccChHHHHHHhhccCCCcccccchhhHHHHHHHHHHHHhccCCCCCccccc
Q 000056 1821 NGISIPYNEAAASAL-RALLTPKLASLLKDQIPKNLLSKLNTNLESPEIIWNSSTRAELLKFVDQQRASQSPDGSYDLKD 1899 (2526)
Q Consensus 1821 d~~~~P~n~~v~~~L-~klLpP~l~~~L~d~~p~~~L~~LnSn~EnPeLIWnn~tRaEL~e~Le~q~~~~~~~~~w~l~~ 1899 (2526)
+. .+..+ ..=.-|.++..|.+.+ ...|....+.+.... ..+++
T Consensus 266 -----~~---~~~~v~~~g~v~~Lv~lL~~~~--------------------~~v~~~a~~aL~~La-~~~~e------- 309 (780)
T 2z6g_A 266 -----EG---AKMAVRLAGGLQKMVALLNKTN--------------------VKFLAITTDCLQILA-YGNQE------- 309 (780)
T ss_dssp -----TT---HHHHHHHTTHHHHHHHGGGCCC--------------------HHHHHHHHHHHHHHH-TTCHH-------
T ss_pred -----hh---hHHHHHHcCCHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHh-cCChH-------
Confidence 11 12222 1112234444444321 223333333332111 00000
Q ss_pred ccccccccccCCcEEeeEEEeeeccCCCCCCCChHHHHHHHHHHHHHHhhcccCCCCcccccccccccchhhhhccccCC
Q 000056 1900 SNGFLYEALSKELYVGNVYLRVYNDQPDFEITEPEAFCVALIDFISYLVHNQSATKSDVQGEESLDGLSSKIVQDKLSLD 1979 (2526)
Q Consensus 1900 ~~~f~Y~~l~~ELvVGGVYLRlyneqP~~~Lr~Pk~Fl~~LLdfl~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~ 1979 (2526)
.+.++ . +. ..+..|+..+ ....
T Consensus 310 --------~~~~i----------~--------~~-~~i~~Lv~lL----~~~~--------------------------- 331 (780)
T 2z6g_A 310 --------SKLII----------L--------AS-GGPQALVNIM----RTYT--------------------------- 331 (780)
T ss_dssp --------HHHHH----------H--------TT-THHHHHHHHH----TTCC---------------------------
T ss_pred --------HHHHH----------H--------Hc-CCHHHHHHHH----hcCC---------------------------
Confidence 00000 0 00 0112222221 1000
Q ss_pred CCCCccccCCCCcccCccccccccccchhcccccccCcchHHHHHHHHHHHHHHHHHHhhCccchhhccccCChhhhhcc
Q 000056 1980 PSSSKTFELPSDATDSSMNERKVNDESLAVSDRKVTGKEDSVMIKNLQFGLTSLQNILTSNPNLASIFSTKEKLLPLFEC 2059 (2526)
Q Consensus 1980 ~~~~~~~e~~~~~~~~~~~~~~l~~~s~~~s~~~~~~~~d~e~l~~l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~ 2059 (2526)
.... ...+..+|.++-. .+.....+...+.++.|..+
T Consensus 332 ---------------------------------------~~~~---~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~l 368 (780)
T 2z6g_A 332 ---------------------------------------YEKL---LWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLH 368 (780)
T ss_dssp ---------------------------------------CHHH---HHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGG
T ss_pred ---------------------------------------HHHH---HHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHH
Confidence 0001 1233455555443 45555555556677788888
Q ss_pred cCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhh-CcchHHHHHHHHHHhhcch-HHHHHHHHcCC
Q 000056 2060 FSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY-APACREGVLHVLYALASTP-ELAWAAAKHGG 2137 (2526)
Q Consensus 2060 L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~-~p~~~~~vL~~L~aL~s~t-~lVkqal~~Gg 2137 (2526)
|... +..+...|+.+|..++.+...... ...++..|+.+|+. .++.+..++.+|..|+..+ +..+..++.||
T Consensus 369 L~~~---~~~~~~~a~~~L~~L~~~~~~~~~---~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~ 442 (780)
T 2z6g_A 369 LTDP---SQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 442 (780)
T ss_dssp TTCS---CHHHHHHHHHHHHHHHTTCTTCSC---CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTH
T ss_pred HcCC---chHHHHHHHHHHHHHhccchhhhh---hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence 8643 456788888888888765533211 12467778888864 4556677888888888754 56666778899
Q ss_pred HhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHH--HHHHhhCcHHHHHHHhcCchhhHHHhhcccCcCcccc
Q 000056 2138 VVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVA--ITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPELV 2215 (2526)
Q Consensus 2138 vlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~--~~L~KfLP~~fvdamrdsP~~a~v~~fds~~EnPELI 2215 (2526)
+..|+++|.... ....+|..++..|+.+..+.......+ ..-...+ +.+ +.++.+.+
T Consensus 443 i~~Lv~lL~~~~--~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l-~~L------------~~lL~~~~------ 501 (780)
T 2z6g_A 443 IEALVRTVLRAG--DREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGL-PVV------------VKLLHPPS------ 501 (780)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCH-HHH------------HHTTSTTC------
T ss_pred HHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCH-HHH------------HHHhcCCC------
Confidence 999999986421 235899999999999975421111111 1111222 223 33333221
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHH-hcCCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChHHHHHHHHHH
Q 000056 2216 WTPAMAASLSAQISTMASDLYREQ-MKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQ 2294 (2526)
Q Consensus 2216 Wn~~mR~~v~~~i~~~~~~~~~~Q-~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~ 2294 (2526)
..+.|...+..|.+++..--.++ ..+.. -+|.-... +.+ +..-+ -+.-.|.+-|
T Consensus 502 -~~~v~~~A~~aL~nLa~~~~~~~~i~~~g---~i~~Lv~l---L~~----~~~~~---~~~aa~al~n----------- 556 (780)
T 2z6g_A 502 -HWPLIKATVGLIRNLALCPANHAPLREQG---AIPRLVQL---LVR----AHQDT---QRRTSMGGTQ----------- 556 (780)
T ss_dssp -CHHHHHHHHHHHHHHHSSHHHHHHHHHTT---HHHHHHHH---HHH----HHHHH---HHTTC----------------
T ss_pred -hHHHHHHHHHHHHHHhcCHHHHHHHHHCC---CHHHHHHH---HHh----cchhH---HHHHhhcccc-----------
Confidence 12556666666666542100000 00000 00000000 000 00000 0011111111
Q ss_pred HHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcC
Q 000056 2295 YLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYE 2374 (2526)
Q Consensus 2295 ~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 2374 (2526)
.. .-.+..+.++.+-+..|+..|. ..+.....+...|.+|.|+.+|.+.+
T Consensus 557 ------q~-~~~~~~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~Lv~lL~~~~---------------------- 606 (780)
T 2z6g_A 557 ------QQ-FVEGVRMEEIVEACTGALHILA-RDIHNRIVIRGLNTIPLFVQLLYSPI---------------------- 606 (780)
T ss_dssp -------C-CSTTCCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTCCHHHHHHGGGCSC----------------------
T ss_pred ------ch-hhcccChHHHHHHHHHHHHHHh-cChhhHHHHHHCCcHHHHHHHHcCCC----------------------
Confidence 00 0001111233344555666554 35666777888999999999987532
Q ss_pred CCCCCCCCCCChhhhhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhhccCchH--hHHHHHHHHHhc
Q 000056 2375 SDDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGSI--LALETLKRVVVA 2448 (2526)
Q Consensus 2375 ~~~~~~~~~~~~~~~~~~s~l~vlh~ls~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~~--la~etL~r~~~~ 2448 (2526)
+.++..|...|..|+.+....+.|.+.++ ++.|++.+.+....+ .|+.+|+++...
T Consensus 607 -------------~~v~~~a~~aL~~L~~~~~~~~~i~~~g~-----i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~ 664 (780)
T 2z6g_A 607 -------------ENIQRVAAGVLCELAQDKEAAEAIEAEGA-----TAPLTELLHSRNEGVATYAAAVLFRMSED 664 (780)
T ss_dssp -------------HHHHHHHHHHHHHHHTSHHHHHHHHHTTC-----HHHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred -------------HHHHHHHHHHHHHHhcCHHHHHHHHHCCC-----HHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 35888999999999999999999998776 999999988765443 899999999884
No 38
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.36 E-value=0.00046 Score=87.75 Aligned_cols=135 Identities=21% Similarity=0.163 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCC-hhHHHHHHhhcchHHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTC-ASCLEAMVADGSSLLLLLQM 2104 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n-~~CVeaiA~~~~vl~~Ll~l 2104 (2526)
...++.+|.|+-...+.... -.+.++.|..+|.. .++.++..+..+|..++.+ ..+.+.+.+.+ .+..|+.+
T Consensus 244 ~~~a~~~L~~l~~~~~~~~~---~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~-~v~~L~~l 316 (529)
T 1jdh_A 244 VQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGS---DDINVVTCAAGILSNLTCNNYKNKMMVCQVG-GIEALVRT 316 (529)
T ss_dssp HHHHHHHHHHHHTTCTTCSC---CHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHTTTCHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCChhhHH---HHhHHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-ChHHHHHH
Confidence 34567788888877655332 12456677777754 3567899999999999876 45777777655 77888888
Q ss_pred HhhC---cchHHHHHHHHHHhhcch----HHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000056 2105 LHYA---PACREGVLHVLYALASTP----ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2526)
Q Consensus 2105 L~~~---p~~~~~vL~~L~aL~s~t----~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aD 2170 (2526)
|... ++.+..++.+|..++... ......+..|++..|+++|... .+..+|..++.+|+.+..+
T Consensus 317 l~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~---~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP---SHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT---CCHHHHHHHHHHHHHHTTS
T ss_pred HHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccc---cchHHHHHHHHHHHHHhcC
Confidence 8642 455667888888887642 2455678899999999998753 2468999999999999763
No 39
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.29 E-value=0.00026 Score=91.59 Aligned_cols=330 Identities=14% Similarity=0.156 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHHhhCccch-hhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcC-ChhHHHHHHhhcchHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLA-SIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQ 2103 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la-~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaiA~~~~vl~~Ll~ 2103 (2526)
...++++++.+|....+-. +.+...|-++.|..+|... +++.++..|..+|..++. +......+...+ +++.|+.
T Consensus 93 q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~--~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~G-aip~Lv~ 169 (529)
T 3tpo_A 93 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT--DCSPIQFESAWALTNIASGTSEQTKAVVDGG-AIPAFIS 169 (529)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT--TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHH
Confidence 3457888999986543322 2355678899999999753 346789889999977765 555666777655 7888888
Q ss_pred HHhh-CcchHHHHHHHHHHhhcc-hHHHHHHHHcCCHhhhHHhhcCCCC-CCcHHHHHHHHHHHHHHhcCCCCChHHHHH
Q 000056 2104 MLHY-APACREGVLHVLYALAST-PELAWAAAKHGGVVYILELLLPSQQ-ETPLQQRAAAASLLGKLVGQPMHGPRVAIT 2180 (2526)
Q Consensus 2104 lL~~-~p~~~~~vL~~L~aL~s~-t~lVkqal~~GgvlyLL~LL~~s~e-~~~~~~R~~aA~lL~kM~aDklhGPrV~~~ 2180 (2526)
+|.+ .++....++.+|..++.+ ++.....+++|++..|+.+|..... .........++..|..+...+-..+.+. .
T Consensus 170 LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~-~ 248 (529)
T 3tpo_A 170 LLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD-A 248 (529)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH-H
T ss_pred HHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHH-H
Confidence 8875 345667788999999874 5677778899999999999875421 1234455667778888887654443322 2
Q ss_pred HHhhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccC
Q 000056 2181 LARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMR 2260 (2526)
Q Consensus 2181 L~KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~ 2260 (2526)
....+| .++..+.+. +| +.+...+..+..++.. +++.. ..
T Consensus 249 ~~~~lp-~L~~LL~~~--------------~~------~v~~~a~~aL~~l~~~---------------~~~~~--~~-- 288 (529)
T 3tpo_A 249 VEQILP-TLVRLLHHN--------------DP------EVLADSCWAISYLTDG---------------PNERI--EM-- 288 (529)
T ss_dssp HHHHHH-HHHHHTTSS--------------CH------HHHHHHHHHHHHHHSS---------------CHHHH--HH--
T ss_pred HhhHHH-HHHHHhcCC--------------cH------HHHHHHHHHHHHhhhh---------------hhhhH--HH--
Confidence 233333 233333322 22 2344444444443311 01000 00
Q ss_pred CCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCC
Q 000056 2261 DEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGY 2340 (2526)
Q Consensus 2261 ~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~ 2340 (2526)
++- .+++..+++.+... +..+..-...|+..+....+.....+-..|-
T Consensus 289 --v~~-----------------------~g~i~~Lv~lL~~~-------~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~ 336 (529)
T 3tpo_A 289 --VVK-----------------------KGVVPQLVKLLGAT-------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 336 (529)
T ss_dssp --HHT-----------------------TTCHHHHHHHHTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTG
T ss_pred --HHh-----------------------ccchHHHHHHhcCC-------ChhHHHHHHHHHHHHHccchHHHHHHhhccc
Confidence 000 11223344444432 2234444566777777778888888889999
Q ss_pred hHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhC-ChhHHHHHhhcCCCCC
Q 000056 2341 VPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGTP 2419 (2526)
Q Consensus 2341 lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~-s~~Cv~ala~~~~~~~ 2419 (2526)
+|.|+.+|.+.. +.+++.|...|..|+. +..+...+...+.
T Consensus 337 l~~L~~LL~~~~-----------------------------------~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~--- 378 (529)
T 3tpo_A 337 LAVFPSLLTNPK-----------------------------------TNIQKEATWTMSNITAGRQDQIQQVVNHGL--- 378 (529)
T ss_dssp GGGHHHHTTCSS-----------------------------------HHHHHHHHHHHHHHHTSCHHHHHHHHHTTH---
T ss_pred HHHHHHHHcCCC-----------------------------------HHHHHHHHHHHHHHhcccHHHHHHHHhcCc---
Confidence 999999987532 3577888888888765 7888888887654
Q ss_pred cchHHHHHHhhccCch--HhHHHHHHHHHhcCCccchHHHHHHHhhCcHHHHHHhcc
Q 000056 2420 QVVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2420 ~~v~~l~~a~~~~~~~--~la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
+|+|+..+.+...- ..|+-+|..+...+ .++-+.+-.+.|.|+.|+.+|+
T Consensus 379 --i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~---~~~~~~~l~~~g~i~~L~~LL~ 430 (529)
T 3tpo_A 379 --VPFLVGVLSKADFKTQKAAAWAITNYTSGG---TVEQIVYLVHCGIIEPLMNLLS 430 (529)
T ss_dssp --HHHHHHHHHSSCHHHHHHHHHHHHHHHHHS---CHHHHHHHHHTTCHHHHHHGGG
T ss_pred --HHHHHHHhcCCCHHHHHHHHHHHHHHHcCC---CHHHHHHHHHCcCHHHHHHHhc
Confidence 99999999876543 38899999988754 3456667789999999999995
No 40
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.2e-06 Score=83.37 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=49.0
Q ss_pred CChHHHHHHhcccccCCCCCCccccccchhccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhh
Q 000056 1500 LSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQ 1579 (2526)
Q Consensus 1500 ~s~~~ay~iLgv~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLs 1579 (2526)
|+.+|||+||||+++. ..++.++||++||+|...+||||+. .......|++|+|+|.
T Consensus 1 mt~~EA~~ILgv~~~~----------------------~~a~~~~Ik~~yr~Lm~~nhPDkGG-S~yl~~ki~~Ake~l~ 57 (65)
T 2guz_B 1 MTLDESCKILNIEESK----------------------GDLNMDKINNRFNYLFEVNDKEKGG-SFYLQSKVYRAAERLK 57 (65)
T ss_dssp CCHHHHHHHTTCCGGG----------------------TCCSHHHHHHHHHHHHHHTCGGGTC-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCc----------------------CcCCHHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHHH
Confidence 6789999999999521 0378899999999999999999964 4667889999999997
Q ss_pred c
Q 000056 1580 A 1580 (2526)
Q Consensus 1580 d 1580 (2526)
.
T Consensus 58 ~ 58 (65)
T 2guz_B 58 W 58 (65)
T ss_dssp H
T ss_pred H
Confidence 5
No 41
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.19 E-value=0.00023 Score=91.31 Aligned_cols=298 Identities=18% Similarity=0.192 Sum_probs=202.5
Q ss_pred ChhhhhcccCCCCCCCCChhhHHHHHHHHh-cCCh-hHHHHHHhhcchHHHHHHHHhhC--cchHHHHHHHHHHhhcc-h
Q 000056 2052 KLLPLFECFSVPFAPDSNIPQLCLNVLSLL-TTCA-SCLEAMVADGSSLLLLLQMLHYA--PACREGVLHVLYALAST-P 2126 (2526)
Q Consensus 2052 ~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~l-s~n~-~CVeaiA~~~~vl~~Ll~lL~~~--p~~~~~vL~~L~aL~s~-t 2126 (2526)
.++.|+..|.. +++.++..|+..|..+ +... +.+..+...+ ++..|+.+|... ++.+..++.+|..+++. +
T Consensus 75 ~l~~lv~~L~s---~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g-~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~ 150 (528)
T 4b8j_A 75 SLPAMIGGVYS---DDNNLQLEATTQFRKLLSIERSPPIEEVIQSG-VVPRFVQFLTREDFPQLQFEAAWALTNIASGTS 150 (528)
T ss_dssp CHHHHHHHHTS---SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTT-CHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCC-CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 45666677654 2456888888888666 4332 4566666654 789999999753 56667788999999985 6
Q ss_pred HHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhc
Q 000056 2127 ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALE 2206 (2526)
Q Consensus 2127 ~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~KfLP~~fvdamrdsP~~a~v~~fd 2206 (2526)
+.....+..|++..|+.+|... ++.+|..++.+|+.+..+ +|..+..+.. .+.-...+.++.
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~----~~~v~~~a~~aL~~l~~~---~~~~~~~i~~-----------~g~l~~Ll~lL~ 212 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGSS----SDDVREQAVWALGNVAGD---SPKCRDLVLA-----------NGALLPLLAQLN 212 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHHT---CHHHHHHHHH-----------TTCHHHHHHTCC
T ss_pred HHHHHHHhCCcHHHHHHHhcCC----CHHHHHHHHHHHHHHhCC---ChhhHHHHHH-----------CCcHHHHHHHHh
Confidence 7778888899999999998752 679999999999999864 4444433322 111122334442
Q ss_pred ccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChHH
Q 000056 2207 QTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKR 2286 (2526)
Q Consensus 2207 s~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~ 2286 (2526)
.. -+.++|..+...+..++.. .+ .. +..
T Consensus 213 ~~-------~~~~v~~~a~~~L~~L~~~-------~~-------~~-------------------------------~~~ 240 (528)
T 4b8j_A 213 EH-------TKLSMLRNATWTLSNFCRG-------KP-------QP-------------------------------SFE 240 (528)
T ss_dssp TT-------CCHHHHHHHHHHHHHHHCS-------SS-------CC-------------------------------CHH
T ss_pred cC-------CCHHHHHHHHHHHHHHHcC-------CC-------CC-------------------------------cHH
Confidence 11 1445666666666555321 01 10 011
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCC
Q 000056 2287 FLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGN 2366 (2526)
Q Consensus 2287 FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~ 2366 (2526)
...+++..++..+... |+++..-...|+..|....+.....+...|.+|.|+.+|.+.+
T Consensus 241 ~~~~~l~~L~~lL~~~-------~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-------------- 299 (528)
T 4b8j_A 241 QTRPALPALARLIHSN-------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS-------------- 299 (528)
T ss_dssp HHTTHHHHHHHHTTCC-------CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC--------------
T ss_pred HHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC--------------
Confidence 1245566666666432 3445555566777777666666677788899999999987532
Q ss_pred CccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhC-ChhHHHHHhhcCCCCCcchHHHHHHhhcc-Cch--HhHHHHH
Q 000056 2367 SEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGTPQVVPILMKAIGWQ-GGS--ILALETL 2442 (2526)
Q Consensus 2367 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~-s~~Cv~ala~~~~~~~~~v~~l~~a~~~~-~~~--~la~etL 2442 (2526)
+.++..|+.+|..|+. +..+.+.+... .++|.|+..+... ... ..||-+|
T Consensus 300 ---------------------~~v~~~a~~~L~nl~~~~~~~~~~~~~~-----~~l~~L~~lL~~~~~~~v~~~A~~~L 353 (528)
T 4b8j_A 300 ---------------------PSVLIPALRTVGNIVTGDDAQTQCIIDH-----QALPCLLSLLTQNLKKSIKKEACWTI 353 (528)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTSCHHHHHHHHTT-----THHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred ---------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHh-----hhHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 2578899999999987 66677777654 4599999999876 433 3899999
Q ss_pred HHHHhcCCccchHHHHHHHhhCcHHHHHHhcc
Q 000056 2443 KRVVVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2443 ~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
..+... .+..+...++.|++|.|+.+|.
T Consensus 354 ~nl~~~----~~~~~~~~~~~~~i~~L~~lL~ 381 (528)
T 4b8j_A 354 SNITAG----NKDQIQAVINAGIIGPLVNLLQ 381 (528)
T ss_dssp HHHHTS----CHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCC----CHHHHHHHHHCCCHHHHHHHHh
Confidence 998863 3456777788899999999995
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.19 E-value=0.00031 Score=90.54 Aligned_cols=328 Identities=14% Similarity=0.160 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHhh--CccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHh-cCChhHHHHHHhhcchHHHHHH
Q 000056 2027 QFGLTSLQNILTS--NPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLL-TTCASCLEAMVADGSSLLLLLQ 2103 (2526)
Q Consensus 2027 ~maL~AL~nLL~~--nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~l-s~n~~CVeaiA~~~~vl~~Ll~ 2103 (2526)
..++++++.+|.. ||-... +...|-+++|.++|... +++.+|..|..+|..+ +.+.+...+|...+ +++.|+.
T Consensus 75 ~~a~~~~rklls~e~~ppi~~-ii~~G~ip~LV~lL~~~--~~~~lq~~Aa~aL~nias~~~e~~~~vv~~G-aIp~Lv~ 150 (510)
T 3ul1_B 75 LQATQAARKLLSREKQPPIDN-IIRAGLIPKFVSFLGKT--DCSPIQFESAWALTNIASGTSEQTKAVVDGG-AIPAFIS 150 (510)
T ss_dssp HHHHHHHHHHHTCSSCCCHHH-HHHTTHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhcCCCCchHHH-HHHCCCHHHHHHHHCCC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC-CHHHHHH
Confidence 4578899999864 444433 44568899999999753 3457898899999776 56778888888765 7889999
Q ss_pred HHhh-CcchHHHHHHHHHHhhcc-hHHHHHHHHcCCHhhhHHhhcCCC-CCCcHHHHHHHHHHHHHHhcCCCCChHHHHH
Q 000056 2104 MLHY-APACREGVLHVLYALAST-PELAWAAAKHGGVVYILELLLPSQ-QETPLQQRAAAASLLGKLVGQPMHGPRVAIT 2180 (2526)
Q Consensus 2104 lL~~-~p~~~~~vL~~L~aL~s~-t~lVkqal~~GgvlyLL~LL~~s~-e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~ 2180 (2526)
+|.+ .++.+..++.+|..++.+ ++.....+++|++..|+.++.... +.........++..|..+...+-..+.+. .
T Consensus 151 lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~-~ 229 (510)
T 3ul1_B 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD-A 229 (510)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHH-H
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHH-H
Confidence 9875 345667788999999874 567777789999999999987532 11234455567778888887654433322 1
Q ss_pred HHhhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccC
Q 000056 2181 LARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMR 2260 (2526)
Q Consensus 2181 L~KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~ 2260 (2526)
....+| .++..+.+. + ++.+...+..+..++.. + ++.. ..
T Consensus 230 ~~~~lp-~L~~LL~~~--------------~------~~v~~~A~~aL~~L~~~--------~-------~~~~--~~-- 269 (510)
T 3ul1_B 230 VEQILP-TLVRLLHHN--------------D------PEVLADSCWAISYLTDG--------P-------NERI--EM-- 269 (510)
T ss_dssp HHHHHH-HHHHHTTCS--------------C------HHHHHHHHHHHHHHTSS--------C-------HHHH--HH--
T ss_pred HHhHHH-HHHHHHhcC--------------C------HHHHHHHHHHHHHHhhc--------h-------hhhH--HH--
Confidence 223333 233333222 1 22344555555444311 1 0000 00
Q ss_pred CCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCC
Q 000056 2261 DEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGY 2340 (2526)
Q Consensus 2261 ~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~ 2340 (2526)
++-+ +++..+++.+... +..+..-...|+..+....+.....+-..|-
T Consensus 270 --i~~~-----------------------g~i~~Lv~lL~~~-------~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~ 317 (510)
T 3ul1_B 270 --VVKK-----------------------GVVPQLVKLLGAT-------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 317 (510)
T ss_dssp --HHTT-----------------------TCHHHHHHHHTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTG
T ss_pred --HHhc-----------------------ccchhhhhhhcCC-------ChhhhhHHHHHHHHhhcCCHHHHHHHhhccc
Confidence 0000 1233344444432 2233344566677777777888888888999
Q ss_pred hHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhC-ChhHHHHHhhcCCCCC
Q 000056 2341 VPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGTP 2419 (2526)
Q Consensus 2341 lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~-s~~Cv~ala~~~~~~~ 2419 (2526)
+|.|+.+|.+.+ +.+++.|...|..|+. +..+...+...+.
T Consensus 318 l~~L~~LL~~~~-----------------------------------~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~--- 359 (510)
T 3ul1_B 318 LAVFPSLLTNPK-----------------------------------TNIQKEATWTMSNITAGRQDQIQQVVNHGL--- 359 (510)
T ss_dssp GGGCC-CTTCSS-----------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTH---
T ss_pred hHHHHHHhcCCC-----------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHhcCC---
Confidence 999988876432 3577888888887764 7888888887654
Q ss_pred cchHHHHHHhhccCch--HhHHHHHHHHHhcCCccchHHHHHHHhhCcHHHHHHhcc
Q 000056 2420 QVVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2420 ~~v~~l~~a~~~~~~~--~la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
+|+|+..+.+.... ..|+-+|..+...+ ..+-+..-++.|.|+.|+.+|+
T Consensus 360 --i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~---~~~~~~~L~~~g~i~~L~~LL~ 411 (510)
T 3ul1_B 360 --VPFLVGVLSKADFKTQKEAAWAITNYTSGG---TVEQIVYLVHCGIIEPLMNLLS 411 (510)
T ss_dssp --HHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---CHHHHHHHHHTTCHHHHHHGGG
T ss_pred --HHHHHHHHcCCCHHHHHHHHHHHHHHHccC---CHHHHHHHHHCCCHHHHHHHhc
Confidence 99999999876533 37889999888754 3455667778999999999995
No 43
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.16 E-value=0.00023 Score=90.44 Aligned_cols=359 Identities=15% Similarity=0.131 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQML 2105 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL 2105 (2526)
...+.++|.++-...+.-...+...+.++.|...|... ++..++..+...|..++.+.+....|...+ .+..|+.+|
T Consensus 34 ~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g-~i~~L~~lL 110 (529)
T 1jdh_A 34 VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHNLSHHREGLLAIFKSG-GIPALVKML 110 (529)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTSHHHHHHHHHTT-HHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCchhHHHHHHcC-CHHHHHHHH
Confidence 35667788888766554333333335677788888542 245789999999999999988888888764 788899888
Q ss_pred hh-CcchHHHHHHHHHHhhcch-HHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHh
Q 000056 2106 HY-APACREGVLHVLYALASTP-ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLAR 2183 (2526)
Q Consensus 2106 ~~-~p~~~~~vL~~L~aL~s~t-~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~K 2183 (2526)
.+ .++.+..++.+|..++..+ .......+.|++..|+++|... +.+.|..++..|..+... .+..+..+..
T Consensus 111 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~----~~~~~~~~~~~L~~la~~---~~~~~~~i~~ 183 (529)
T 1jdh_A 111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT----NVKFLAITTDCLQILAYG---NQESKLIILA 183 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC----CHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence 75 3455667889999998753 4555556789999999999753 578899999999888652 2443333222
Q ss_pred -hCcHHHHHHHhcCchhh----HHHhhcccCcCcccccCHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCcccccc
Q 000056 2184 -FLPDGLVSVIRDGPGEA----VVSALEQTTETPELVWTPAMAASLSA--QISTMASDLYREQMKGRVVDWDVPEQASAQ 2256 (2526)
Q Consensus 2184 -fLP~~fvdamrdsP~~a----~v~~fds~~EnPELIWn~~mR~~v~~--~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y 2256 (2526)
=..+.++..|+++..+. +..++..-..+|+ .|..+.+ .+..+. ....++. ++ .. .
T Consensus 184 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~g~~~~L~-----~ll~~~~-----~~-~~-~ 245 (529)
T 1jdh_A 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS------NKPAIVEAGGMQALG-----LHLTDPS-----QR-LV-Q 245 (529)
T ss_dssp TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT------HHHHHHHTTHHHHHH-----TTTTSSC-----HH-HH-H
T ss_pred CCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc------cHHHHHHCCCHHHHH-----HHHhCCC-----hH-HH-H
Confidence 12344555565542211 0111111111111 1221110 000000 0000000 00 00 0
Q ss_pred cccCCCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhc
Q 000056 2257 QEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVG 2336 (2526)
Q Consensus 2257 ~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp 2336 (2526)
. ..++.-.|--..|.+. ...+++..++..+... |+++..-...++..|....+...+.+.
T Consensus 246 ~-------a~~~L~~l~~~~~~~~------~~~~~i~~L~~ll~~~-------~~~v~~~a~~~L~~L~~~~~~~~~~~~ 305 (529)
T 1jdh_A 246 N-------CLWTLRNLSDAATKQE------GMEGLLGTLVQLLGSD-------DINVVTCAAGILSNLTCNNYKNKMMVC 305 (529)
T ss_dssp H-------HHHHHHHHHTTCTTCS------CCHHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred H-------HHHHHHHHhcCChhhH------HHHhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 0 0000000000001110 1235677777776432 344556667788888777788888999
Q ss_pred cCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhCC----hhHHHHHh
Q 000056 2337 YLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAAS----TTCAEAMA 2412 (2526)
Q Consensus 2337 ~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~s----~~Cv~ala 2412 (2526)
..|.+|+|+..|.+.+. .+.++..|++.|..|+.+ +.+...+.
T Consensus 306 ~~~~v~~L~~ll~~~~~---------------------------------~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~ 352 (529)
T 1jdh_A 306 QVGGIEALVRTVLRAGD---------------------------------REDITEPAICALRHLTSRHQEAEMAQNAVR 352 (529)
T ss_dssp HTTHHHHHHHHHHHHTT---------------------------------CHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred HcCChHHHHHHHHccCC---------------------------------HHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 99999999999986321 035788999999999875 23555666
Q ss_pred hcCCCCCcchHHHHHHhhccCc-h--HhHHHHHHHHHhcCCccchHHHHHHHhhCcHHHHHHhccc
Q 000056 2413 ATSTGTPQVVPILMKAIGWQGG-S--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDW 2475 (2526)
Q Consensus 2413 ~~~~~~~~~v~~l~~a~~~~~~-~--~la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd~ 2475 (2526)
..+. +|.|++.++.... . .-||.+|..+.... ..+ ..-++.|+||.|+.+|..
T Consensus 353 ~~~~-----i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~-~~~----~~~~~~~~i~~L~~ll~~ 408 (529)
T 1jdh_A 353 LHYG-----LPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANH----APLREQGAIPRLVQLLVR 408 (529)
T ss_dssp HTTC-----HHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGH----HHHHHTTHHHHHHHHHHH
T ss_pred HcCC-----hhHHHHHhccccchHHHHHHHHHHHHHhcCh-hhh----HHHHHcCCHHHHHHHHHH
Confidence 5544 9999999988653 3 37888888887632 222 344578999999999953
No 44
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.11 E-value=0.0032 Score=81.39 Aligned_cols=135 Identities=16% Similarity=0.150 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcC-ChhHHHHHHhhcchHHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQM 2104 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaiA~~~~vl~~Ll~l 2104 (2526)
...++.+|.|+...++.....+...+.++.|..+|... +..+++.|.-+|..++. +..+.+.+...+ +++.|+.+
T Consensus 310 ~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~---~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g-~i~~Lv~l 385 (529)
T 3tpo_A 310 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP---KTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGV 385 (529)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS---SHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC---CHHHHHHHHHHHHHHhcccHHHHHHHHhcC-cHHHHHHH
Confidence 35678899999988888777777778888888888753 56788899999977765 777888777654 78888888
Q ss_pred HhhC-cchHHHHHHHHHHhhc--chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHh
Q 000056 2105 LHYA-PACREGVLHVLYALAS--TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLV 2168 (2526)
Q Consensus 2105 L~~~-p~~~~~vL~~L~aL~s--~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~ 2168 (2526)
|... ++.+..+.-+|..++. +.+.++..++.|++..|+++|... ++.++..+...|..+.
T Consensus 386 L~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~----d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 386 LSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK----DTKIIQVILDAISNIF 448 (529)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS----CHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC----CHHHHHHHHHHHHHHH
Confidence 8753 3445556677777764 567788889999999999999642 5778888888888876
No 45
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.03 E-value=0.00059 Score=87.77 Aligned_cols=299 Identities=13% Similarity=0.135 Sum_probs=200.2
Q ss_pred CChhhhhcccCCCCCCCCChhhHHHHHHHHhcCC--hhHHHHHHhhcchHHHHHHHHhh--CcchHHHHHHHHHHhhcc-
Q 000056 2051 EKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTC--ASCLEAMVADGSSLLLLLQMLHY--APACREGVLHVLYALAST- 2125 (2526)
Q Consensus 2051 ~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n--~~CVeaiA~~~~vl~~Ll~lL~~--~p~~~~~vL~~L~aL~s~- 2125 (2526)
+.++.|+..|... ++.++..|+..|..+... ...++.+...+ +++.|+.+|.. .++.+..++.+|..+++.
T Consensus 87 ~~i~~lv~~L~s~---~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g-~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 87 QELPQMTQQLNSD---DMQEQLSATVKFRQILSREHRPPIDVVIQAG-VVPRLVEFMRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp CCHHHHHHHHSCS---SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTT-CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHHHhCCCCCccHHHHHHCC-CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 4567788888653 457888999999877432 44555666544 78889988875 356677788999999874
Q ss_pred hHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhh
Q 000056 2126 PELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSAL 2205 (2526)
Q Consensus 2126 t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~KfLP~~fvdamrdsP~~a~v~~f 2205 (2526)
++.....+..|++..|+.+|... ++.+|..++..|+.+..+ +|..+..+.. .+.-..++.++
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~----~~~vr~~A~~aL~~l~~~---~~~~~~~~~~-----------~~~l~~L~~ll 224 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTG----SVEVKEQAIWALGNVAGD---STDYRDYVLQ-----------CNAMEPILGLF 224 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHTT---CHHHHHHHHH-----------TTCHHHHHHGG
T ss_pred HHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhCC---CccchHHHHH-----------cCcHHHHHHHh
Confidence 56677778899999999999742 688999999999999874 3333322211 11122334444
Q ss_pred cccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChH
Q 000056 2206 EQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPK 2285 (2526)
Q Consensus 2206 ds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK 2285 (2526)
.. . +.++|......+..++.. .++.. +.
T Consensus 225 ~~--~------~~~v~~~a~~~L~~L~~~------~~~~~--------------------------------------~~ 252 (530)
T 1wa5_B 225 NS--N------KPSLIRTATWTLSNLCRG------KKPQP--------------------------------------DW 252 (530)
T ss_dssp GS--C------CHHHHHHHHHHHHHHHCC------SSSCC--------------------------------------CH
T ss_pred cc--C------CHHHHHHHHHHHHHHhCC------CCCCC--------------------------------------cH
Confidence 43 1 345566665555554321 00100 01
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcC
Q 000056 2286 RFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNG 2365 (2526)
Q Consensus 2286 ~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~ 2365 (2526)
....+++..++..+... |+++..-...++..|....+.....+...|.+|.|+..|.+.+
T Consensus 253 ~~~~~~l~~L~~lL~~~-------d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~------------- 312 (530)
T 1wa5_B 253 SVVSQALPTLAKLIYSM-------DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES------------- 312 (530)
T ss_dssp HHHGGGHHHHHHHTTCC-------CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC-------------
T ss_pred HHHHhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC-------------
Confidence 12233555666655432 3345555677777777777777788888899999999987422
Q ss_pred CCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhCC-hhHHHHHhhcCCCCCcchHHHHHHhhccCch--HhHHHHH
Q 000056 2366 NSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAAS-TTCAEAMAATSTGTPQVVPILMKAIGWQGGS--ILALETL 2442 (2526)
Q Consensus 2366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~s-~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~--~la~etL 2442 (2526)
+.++..|+.+|..|+.+ ....+.+... .++|.|+..+...... ..||.+|
T Consensus 313 ----------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~lL~~~~~~vr~~A~~aL 365 (530)
T 1wa5_B 313 ----------------------TLVQTPALRAVGNIVTGNDLQTQVVINA-----GVLPALRLLLSSPKENIKKEACWTI 365 (530)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHT-----THHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ----------------------hhhHHHHHHHHHHHHcCCHHHHHHHHHc-----chHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35788999999999854 5566666543 3599999999876433 3889999
Q ss_pred HHHHhcCCccchHHHHHHHhhCcHHHHHHhcc
Q 000056 2443 KRVVVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2443 ~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
..+... .+..+...++.|++|.|+.+|.
T Consensus 366 ~~l~~~----~~~~~~~~~~~~~l~~L~~lL~ 393 (530)
T 1wa5_B 366 SNITAG----NTEQIQAVIDANLIPPLVKLLE 393 (530)
T ss_dssp HHHTTS----CHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcC----CHHHHHHHHHCCCHHHHHHHHh
Confidence 887763 2445666678899999999995
No 46
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.01 E-value=0.0002 Score=81.72 Aligned_cols=234 Identities=20% Similarity=0.227 Sum_probs=168.2
Q ss_pred ChhhhhcccCCCCCCCCChhhHHHHHHHHhcCCh-hHHHHHHhhcchHHHHHHHHhhC-cchHHHHHHHHHHhhcc-hHH
Q 000056 2052 KLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCA-SCLEAMVADGSSLLLLLQMLHYA-PACREGVLHVLYALAST-PEL 2128 (2526)
Q Consensus 2052 ~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~-~CVeaiA~~~~vl~~Ll~lL~~~-p~~~~~vL~~L~aL~s~-t~l 2128 (2526)
.++.|+.+|... +..++..|+.+|..++... .+...+...+ ++..|+.+|.+. ++.+..++.+|..++.. ++.
T Consensus 3 ~i~~L~~~L~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 78 (252)
T 4hxt_A 3 DVEKLVKLLTST---DSETQKEAARDLAEIASGPASAIKAIVDAG-GVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78 (252)
T ss_dssp HHHHHHHHTTCS---CHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCcHHHHHHHHCC-CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 356677777653 4678899999998887655 4777777654 788899888753 45567789999999986 788
Q ss_pred HHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhccc
Q 000056 2129 AWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQT 2208 (2526)
Q Consensus 2129 Vkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~KfLP~~fvdamrdsP~~a~v~~fds~ 2208 (2526)
.....+.|++..|+.+|... ++.+|..++.+|+.|.. +.|..+..+.+ .+.-...+.++.+
T Consensus 79 ~~~~~~~~~i~~l~~ll~~~----~~~v~~~a~~~L~~l~~---~~~~~~~~~~~-----------~~~i~~L~~~l~~- 139 (252)
T 4hxt_A 79 IKAIVDAGGVEVLVKLLTST----DSEVQKEAARALANIAS---GPDEAIKAIVD-----------AGGVEVLVKLLTS- 139 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCS----SHHHHHHHHHHHHHHTT---SCHHHHHHHHH-----------TTHHHHHHHHTTC-
T ss_pred HHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHc---CCHHHHHHHHH-----------CCCHHHHHHHHcC-
Confidence 88889999999999998752 58899999999999975 23433322221 1111223333332
Q ss_pred CcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChHHHH
Q 000056 2209 TETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFL 2288 (2526)
Q Consensus 2209 ~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL 2288 (2526)
T Consensus 140 -------------------------------------------------------------------------------- 139 (252)
T 4hxt_A 140 -------------------------------------------------------------------------------- 139 (252)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCc
Q 000056 2289 EGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSE 2368 (2526)
Q Consensus 2289 ~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~ 2368 (2526)
.|+++..-...++..|....+.....+...|.+|.|+..|.+.+
T Consensus 140 --------------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---------------- 183 (252)
T 4hxt_A 140 --------------------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD---------------- 183 (252)
T ss_dssp --------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC----------------
T ss_pred --------------------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCC----------------
Confidence 12234445566777777777777778888999999999987422
Q ss_pred cccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhC-ChhHHHHHhhcCCCCCcchHHHHHHhhccCch--HhHHHHHHHH
Q 000056 2369 ADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGTPQVVPILMKAIGWQGGS--ILALETLKRV 2445 (2526)
Q Consensus 2369 ~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~-s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~--~la~etL~r~ 2445 (2526)
+.++..|+..|..|+. +..+.+.+.+.++ ++.|++.+...... ..|+.+|..+
T Consensus 184 -------------------~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~-----i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 184 -------------------SEVQKEAARALANIASGPTSAIKAIVDAGG-----VEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp -------------------HHHHHHHHHHHHHHTTSBHHHHHHHHHTTH-----HHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-----HHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 3588899999999997 7777888877654 89999998865433 3888888888
Q ss_pred Hhc
Q 000056 2446 VVA 2448 (2526)
Q Consensus 2446 ~~~ 2448 (2526)
...
T Consensus 240 ~~~ 242 (252)
T 4hxt_A 240 KSG 242 (252)
T ss_dssp HHT
T ss_pred HcC
Confidence 875
No 47
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.93 E-value=0.00077 Score=85.87 Aligned_cols=370 Identities=13% Similarity=0.129 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCC-hhHHHHHHhhcchHHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTC-ASCLEAMVADGSSLLLLLQM 2104 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n-~~CVeaiA~~~~vl~~Ll~l 2104 (2526)
...+..+|.++...++.....+...|.++.|..+|.. ++..++..|...|..++.. .++-..|.+.+ .++.|+.+
T Consensus 19 q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s---~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G-~i~~Lv~l 94 (457)
T 1xm9_A 19 QAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS---PNQNVQQAAAGALRNLVFRSTTNKLETRRQN-GIREAVSL 94 (457)
T ss_dssp HHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS---SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-CHHHHHHH
Confidence 4567889999988888877667778889999999985 3567999999999888865 88888888765 78999999
Q ss_pred Hh-h-CcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcC-------CC-----CCCcHHHHHHHHHHHHHHhcC
Q 000056 2105 LH-Y-APACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLP-------SQ-----QETPLQQRAAAASLLGKLVGQ 2170 (2526)
Q Consensus 2105 L~-~-~p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~-------s~-----e~~~~~~R~~aA~lL~kM~aD 2170 (2526)
|. . .++....+..+|..|+++++.-...++ |++..|+++|.. +. +.....+...++.+|..+..+
T Consensus 95 L~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~ 173 (457)
T 1xm9_A 95 LRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA 173 (457)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS
T ss_pred HhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC
Confidence 97 3 356667788999999987665555666 999999999831 10 012345566899999999864
Q ss_pred CCCChHHHHHHHhh--CcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHH-------HHHHhc
Q 000056 2171 PMHGPRVAITLARF--LPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDL-------YREQMK 2241 (2526)
Q Consensus 2171 klhGPrV~~~L~Kf--LP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~-------~~~Q~~ 2241 (2526)
|..+..+... .-+.++..|+++ ..+ --+++...+.....+..++... +..+..
T Consensus 174 ----~~~~~~i~~~~g~i~~Lv~lL~~~------------~~~--~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~ 235 (457)
T 1xm9_A 174 ----DAGRQTMRNYSGLIDSLMAYVQNC------------VAA--SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235 (457)
T ss_dssp ----HHHHHHHTTSTTHHHHHHHHHHHH------------HHH--TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred ----HHHHHHHHHcCCCHHHHHHHHHhh------------ccc--cCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence 5555444421 122344444421 000 0001111111111111111000 000000
Q ss_pred CCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChHH----HHHHHHHHHHHHHhccCCCCCCCCCchHHHH
Q 000056 2242 GRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKR----FLEGLLDQYLSSIAATHYDTQAIDPELPLLL 2317 (2526)
Q Consensus 2242 ~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~----FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~ll 2317 (2526)
.....-+..+....+........-+|.-+-+ |. .-++|+. +-.+.+..++..+...+ ++++.+-.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~l~~~~~l~~L~~lL~~~~------~~~~~e~a 304 (457)
T 1xm9_A 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPL----PE-EETNPKGSGWLYHSDAIRTYLNLMGKSK------KDATLEAC 304 (457)
T ss_dssp TC----------------------------C----CC-CCSSCCGGGGGGSHHHHHHHHHHHHHCC------CHHHHHHH
T ss_pred ccccccccccccchhhccchhhhhccccCCc----cc-cccCchHHHHHhCcchHHHHHHHHhhcC------CHHHHHHH
Confidence 0000000000000000000000000000000 00 0012221 12456677777777632 23444545
Q ss_pred HHHHHHHHhcCchhhhh-----hccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhh
Q 000056 2318 SAALVSLLRVHPALADH-----VGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRL 2392 (2526)
Q Consensus 2318 t~Alv~LL~~qp~LaD~-----vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2392 (2526)
+-|+..|-+.+.....+ |-..|.+|.|+++|.+.+ +.+++
T Consensus 305 ~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~-----------------------------------~~v~~ 349 (457)
T 1xm9_A 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN-----------------------------------SDVVR 349 (457)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC-----------------------------------HHHHH
T ss_pred HHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC-----------------------------------HhHHH
Confidence 55666666544433322 235799999999987532 36888
Q ss_pred hHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhhccCc-------h-HhHHHHHHHHHhcCCccchHHHHHHHhhC
Q 000056 2393 SCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGG-------S-ILALETLKRVVVAGNRARDALVAQGLKVG 2464 (2526)
Q Consensus 2393 s~l~vlh~ls~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~-------~-~la~etL~r~~~~~~r~~~~Lv~qaL~~~ 2464 (2526)
.|...|..||.++-..+.+.+ .+ ||+|+.-+..... . .-+|.+|..++..+ +.......++|
T Consensus 350 ~A~~aL~nls~~~~~~~~i~~-~~-----i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~----~~~~~~i~~~g 419 (457)
T 1xm9_A 350 SGASLLSNMSRHPLLHRVMGN-QV-----FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ----PQLAKQYFSSS 419 (457)
T ss_dssp HHHHHHHHHHTSGGGHHHHHH-HT-----HHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC----THHHHHHCCHH
T ss_pred HHHHHHHHHhcCHHHHHHHHH-hh-----hHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC----HHHHHHHHHcC
Confidence 999999999999988888875 34 8999998876421 2 27889999998743 45677778899
Q ss_pred cHHHHHHhcc
Q 000056 2465 LVDVLLGLLD 2474 (2526)
Q Consensus 2465 lv~~LL~lLd 2474 (2526)
-++.|..||.
T Consensus 420 ~l~~L~~L~~ 429 (457)
T 1xm9_A 420 MLNNIINLCR 429 (457)
T ss_dssp HHHHHHHHHH
T ss_pred CHHHHHHHHc
Confidence 9999999995
No 48
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.90 E-value=0.0026 Score=84.22 Aligned_cols=377 Identities=15% Similarity=0.113 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcC-ChhHHHHHHhhcchHHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQM 2104 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaiA~~~~vl~~Ll~l 2104 (2526)
...++.+|.|+...++.....+...+.++.|..+|... +..++..++.+|..++. +.++...+.+.+ .+..|+.+
T Consensus 115 ~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~La~~~~~~~~~i~~~g-~v~~Lv~l 190 (644)
T 2z6h_A 115 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQILAYGNQESKLIILASG-GPQALVNI 190 (644)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC---CHHHHHHHHHHHHHHHhcCcHHHHHHHHcC-ChHHHHHH
Confidence 46678999999988776666666677889999999753 44678888889988884 788888887765 77888888
Q ss_pred HhhCc--chHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 000056 2105 LHYAP--ACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLA 2182 (2526)
Q Consensus 2105 L~~~p--~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~ 2182 (2526)
|.... ..+..++.+|..|+.+++.....++.|++..|+.++... +...|..++.+|..+..+. ++. ....
T Consensus 191 L~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~----~~~~~~~a~~~L~nL~~~~---~~~-~~~~ 262 (644)
T 2z6h_A 191 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP----SQRLVQNCLWTLRNLSDAA---TKQ-EGME 262 (644)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS----CHHHHHHHHHHHHHHGGGC---TTC-CSCH
T ss_pred HHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC----CHHHHHHHHHHHHHHhhcc---hhh-hhhh
Confidence 87542 334557888888998888888888999999999988653 5778889999999998642 110 0111
Q ss_pred hhCcHHHHHHHhcCchhh---HHHhhcccCcCcccccCHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCccccccc
Q 000056 2183 RFLPDGLVSVIRDGPGEA---VVSALEQTTETPELVWTPAMAASLSA--QISTMASDLYREQMKGRVVDWDVPEQASAQQ 2257 (2526)
Q Consensus 2183 KfLP~~fvdamrdsP~~a---~v~~fds~~EnPELIWn~~mR~~v~~--~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~ 2257 (2526)
..+ +.++..+++...+. ++..|-.-..+ +++.|..+.+ .|..+..-+... .+ .+.+-+... .
T Consensus 263 ~~i-~~Lv~lL~~~d~~v~~~a~~aL~~L~~~-----~~~~~~~v~~~g~v~~Lv~lL~~~--~~---~~~v~~~a~--~ 329 (644)
T 2z6h_A 263 GLL-GTLVQLLGSDDINVVTCAAGILSNLTCN-----NYKNKMMVCQVGGIEALVRTVLRA--GD---REDITEPAI--C 329 (644)
T ss_dssp HHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHHH--TT---CHHHHHHHH--H
T ss_pred hHH-HHHHHHHcCCCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCCHHHHHHHHHcc--CC---cHHHHHHHH--H
Confidence 222 22334444322110 11112111111 1122222211 111111111100 00 000000000 0
Q ss_pred ccCCCcEEeeeeehhhccCCCCCCCCh------HHHH-HHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCch
Q 000056 2258 EMRDEPQVGGIYVRLFLKDPKFPLRNP------KRFL-EGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPA 2330 (2526)
Q Consensus 2258 ~l~~El~VGGVYlRLFl~nP~w~LR~P------K~FL-~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~ 2330 (2526)
. |+.+. -++| ..+. .+.+..++..+...+ +.++..-...++..|... +.
T Consensus 330 a-----------L~nL~------~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~------~~~v~~~a~~~L~nLa~~-~~ 385 (644)
T 2z6h_A 330 A-----------LRHLT------SRHQEAEMAQNAVRLHYGLPVVVKLLHPPS------HWPLIKATVGLIRNLALC-PA 385 (644)
T ss_dssp H-----------HHHHT------SSSTTHHHHHHHHHHTTHHHHHHHTTSTTC------CHHHHHHHHHHHHHHTTS-GG
T ss_pred H-----------HHHHh------cCCchHHHHHHHHHHccChHHHHHHhCccC------chHHHHHHHHHHHHHccC-HH
Confidence 0 00000 0001 0011 234566666665421 123434445555555443 43
Q ss_pred hhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhCChhHHHH
Q 000056 2331 LADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEA 2410 (2526)
Q Consensus 2331 LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~s~~Cv~a 2410 (2526)
-...+...|.+|.|+..|...+. +++.+ .+-...+ ..- .. ....+++...++..|+.|+.+..+...
T Consensus 386 ~~~~i~~~~~i~~Lv~lL~~~~~-------~vr~~--a~~al~n-~~~-~~--~~~~~~v~~~a~~aL~~La~~~~~~~~ 452 (644)
T 2z6h_A 386 NHAPLREQGAIPRLVQLLVRAHQ-------DTQRR--TSMGGTQ-QQF-VE--GVRMEEIVEGCTGALHILARDVHNRIV 452 (644)
T ss_dssp GHHHHHHTTHHHHHHHHHHHHHH-------HHTTC--------------CC--SSCHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhccch-------hhhhH--hhhcccc-chh-cc--cccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34777788999999999986431 11100 0000000 000 00 012357888999999999999999999
Q ss_pred HhhcCCCCCcchHHHHHHhhccCch--HhHHHHHHHHHhcCCccchHHHHHHHhhCcHHHHHHhcc
Q 000056 2411 MAATSTGTPQVVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2411 la~~~~~~~~~v~~l~~a~~~~~~~--~la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
+.+.++ +|+|++.+...... ..|+.+|..+... .+....-.+.|-++.|..++.
T Consensus 453 l~~~~~-----i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-----~~~~~~i~~~g~l~~L~~ll~ 508 (644)
T 2z6h_A 453 IRGLNT-----IPLFVQLLYSPIENIQRVAAGVLCELAQD-----KEAAEAIEAEGATAPLTELLH 508 (644)
T ss_dssp HHHTTC-----HHHHHHHTTCSCHHHHHHHHHHHHHHHTS-----HHHHHHHHHTTCHHHHHHHTT
T ss_pred HHhCCc-----HHHHHHHHcCCCHHHHHHHHHHHHHHHcC-----HHHHHHHHHcCChhHHHHHHc
Confidence 988766 99999999875443 3788899887752 234444457899999999984
No 49
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.89 E-value=0.0014 Score=84.51 Aligned_cols=301 Identities=17% Similarity=0.208 Sum_probs=189.8
Q ss_pred hhhhcccCCCCCCCCChhhHHHHHHHHhcC--ChhHHHHHHhhcchHHHHHHHHhhC--cchHHHHHHHHHHhhc-chHH
Q 000056 2054 LPLFECFSVPFAPDSNIPQLCLNVLSLLTT--CASCLEAMVADGSSLLLLLQMLHYA--PACREGVLHVLYALAS-TPEL 2128 (2526)
Q Consensus 2054 ~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~--n~~CVeaiA~~~~vl~~Ll~lL~~~--p~~~~~vL~~L~aL~s-~t~l 2128 (2526)
..+...+.. ++...|..|..-+..+.+ .++=++.|.+.+ +++.|+.+|... |+....+..+|..+++ +++.
T Consensus 60 ~~~v~~l~s---~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G-~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 60 EDIVKGINS---NNLESQLQATQAARKLLSREKQPPIDNIIRAG-LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp HHHHHHHTS---SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTT-HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCC-CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 344444443 244566667666654432 223367777766 889999999643 4555567888888876 6677
Q ss_pred HHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhccc
Q 000056 2129 AWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQT 2208 (2526)
Q Consensus 2129 Vkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~KfLP~~fvdamrdsP~~a~v~~fds~ 2208 (2526)
.+..++.|++..|+.+|... +..+|..|+.+|+.|..| +|..+..+.+ .+.-...+.++...
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~----~~~v~e~A~~aL~nLa~d---~~~~r~~v~~-----------~G~i~~Ll~lL~~~ 197 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASP----HAHISEQAVWALGNIAGD---GSAFRDLVIK-----------HGAIDPLLALLAVP 197 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTT---CHHHHHHHHH-----------TTCHHHHHHHTCSS
T ss_pred HHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHhC---CHHHHHHHHH-----------cCChHHHHHHHHhc
Confidence 78888999999999999653 688999999999999874 5665544432 11112233333321
Q ss_pred CcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChHHHH
Q 000056 2209 TETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFL 2288 (2526)
Q Consensus 2209 ~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL 2288 (2526)
.. ... ...+...+...+..++ .+. +| +.+-...
T Consensus 198 ~~-~~~--~~~~~~~a~~~L~nl~--------~~~--------------------------------~~----~~~~~~~ 230 (510)
T 3ul1_B 198 DL-STL--ACGYLRNLTWTLSNLC--------RNK--------------------------------NP----APPLDAV 230 (510)
T ss_dssp CG-GGS--CHHHHHHHHHHHHHHH--------CCC--------------------------------SS----CCCHHHH
T ss_pred cc-hhh--hHHHHHHHHHHHHHHh--------hcc--------------------------------cc----hhHHHHH
Confidence 10 000 1111112222221111 110 01 1112333
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCc
Q 000056 2289 EGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSE 2368 (2526)
Q Consensus 2289 ~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~ 2368 (2526)
.+++..++..+... |.++..-...|+..|....+.....+...|.+|+|+.+|.+.+
T Consensus 231 ~~~lp~L~~LL~~~-------~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---------------- 287 (510)
T 3ul1_B 231 EQILPTLVRLLHHN-------DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE---------------- 287 (510)
T ss_dssp HHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC----------------
T ss_pred HhHHHHHHHHHhcC-------CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC----------------
Confidence 45566666666542 3345555677788887777778888899999999999988643
Q ss_pred cccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhh-CChhHHHHHhhcCCCCCcchHHHHHHhhccCchH--hHHHHHHHH
Q 000056 2369 ADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLA-ASTTCAEAMAATSTGTPQVVPILMKAIGWQGGSI--LALETLKRV 2445 (2526)
Q Consensus 2369 ~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls-~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~~--la~etL~r~ 2445 (2526)
+.++..+++.|..++ .+......+...+. ++.|.+.+.+....+ .||-+|..+
T Consensus 288 -------------------~~v~~~al~aL~nl~~~~~~~~~~i~~~g~-----l~~L~~LL~~~~~~v~~~A~~aL~nl 343 (510)
T 3ul1_B 288 -------------------LPIVTPALRAIGNIVTGTDEQTQKVIDAGA-----LAVFPSLLTNPKTNIQKEATWTMSNI 343 (510)
T ss_dssp -------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTG-----GGGCC-CTTCSSHHHHHHHHHHHHHH
T ss_pred -------------------hhhhhHHHHHHHHhhcCCHHHHHHHhhccc-----hHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 246778999998774 56667777776544 777777777655443 899999998
Q ss_pred HhcCCccchHHHHHHHhhCcHHHHHHhcc
Q 000056 2446 VVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2446 ~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
... .........+.|++|.|+.+|.
T Consensus 344 ~a~----~~~~~~~v~~~g~i~~Lv~lL~ 368 (510)
T 3ul1_B 344 TAG----RQDQIQQVVNHGLVPFLVGVLS 368 (510)
T ss_dssp TTS----CHHHHHHHHHTTHHHHHHHHHH
T ss_pred HcC----cHHHHHHHHhcCCHHHHHHHHc
Confidence 773 2445666778899999999995
No 50
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.87 E-value=0.0027 Score=84.06 Aligned_cols=359 Identities=15% Similarity=0.133 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQML 2105 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL 2105 (2526)
...++.+|.++-...+.....+...+.+..|...|... .+..++..|...|..++.+.+....+...+ ++..|+.+|
T Consensus 31 r~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~--~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g-~i~~Lv~lL 107 (644)
T 2z6h_A 31 VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHNLSHHREGLLAIFKSG-GIPALVKML 107 (644)
T ss_dssp HHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHTTSHHHHHHHHTTT-HHHHHHHHT
T ss_pred HHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcC--CCHHHHHHHHHHHHHHhcChhhHHHHHHcC-CHHHHHHHH
Confidence 35678888888877764333233335677788888642 245789999999999999988888888764 788899888
Q ss_pred hhC-cchHHHHHHHHHHhhcch-HHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHH-HH
Q 000056 2106 HYA-PACREGVLHVLYALASTP-ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAIT-LA 2182 (2526)
Q Consensus 2106 ~~~-p~~~~~vL~~L~aL~s~t-~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~-L~ 2182 (2526)
.+. ++.+..++.+|..+++.. .......+.|++..|+++|... +++.+..++.+|..+... .+..+.. ..
T Consensus 108 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~----~~~~~~~a~~~L~~La~~---~~~~~~~i~~ 180 (644)
T 2z6h_A 108 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT----NVKFLAITTDCLQILAYG---NQESKLIILA 180 (644)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC----CHHHHHHHHHHHHHHHhc---CcHHHHHHHH
Confidence 753 455667889999998754 4555556799999999999753 467888888899988752 2333222 22
Q ss_pred hhCcHHHHHHHhcCchhh----HHHhhcccCcCcccccCHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCcccccc
Q 000056 2183 RFLPDGLVSVIRDGPGEA----VVSALEQTTETPELVWTPAMAASLSAQ--ISTMASDLYREQMKGRVVDWDVPEQASAQ 2256 (2526)
Q Consensus 2183 KfLP~~fvdamrdsP~~a----~v~~fds~~EnPELIWn~~mR~~v~~~--i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y 2256 (2526)
.=..+.++..+++...+. ++.++..-..+|+ .|..+.+. +..+.. ...++. ....
T Consensus 181 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~------~~~~l~~~g~l~~L~~-----ll~~~~--------~~~~ 241 (644)
T 2z6h_A 181 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS------NKPAIVEAGGMQALGL-----HLTDPS--------QRLV 241 (644)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT------HHHHHHHTTHHHHHHT-----TTTCSC--------HHHH
T ss_pred cCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc------cHHHHHHCCCHHHHHH-----HHhcCC--------HHHH
Confidence 222344555555442110 1111111111111 12221110 111000 000000 0000
Q ss_pred cccCCCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhc
Q 000056 2257 QEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVG 2336 (2526)
Q Consensus 2257 ~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp 2336 (2526)
. .+.++.-.|--..|.+ +...+++..++..+... |.++.+-...++..|-...+.....+.
T Consensus 242 ~------~a~~~L~nL~~~~~~~------~~~~~~i~~Lv~lL~~~-------d~~v~~~a~~aL~~L~~~~~~~~~~v~ 302 (644)
T 2z6h_A 242 Q------NCLWTLRNLSDAATKQ------EGMEGLLGTLVQLLGSD-------DINVVTCAAGILSNLTCNNYKNKMMVC 302 (644)
T ss_dssp H------HHHHHHHHHGGGCTTC------CSCHHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred H------HHHHHHHHHhhcchhh------hhhhhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0 0000000010011111 11236677777777642 345556667788888777778888899
Q ss_pred cCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhCCh----hHHHHHh
Q 000056 2337 YLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAAST----TCAEAMA 2412 (2526)
Q Consensus 2337 ~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~s~----~Cv~ala 2412 (2526)
..|.+|+|+..|.+.+. .+.++..|++.|..|+... ..-..+.
T Consensus 303 ~~g~v~~Lv~lL~~~~~---------------------------------~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~ 349 (644)
T 2z6h_A 303 QVGGIEALVRTVLRAGD---------------------------------REDITEPAICALRHLTSRHQEAEMAQNAVR 349 (644)
T ss_dssp HTTHHHHHHHHHHHHTT---------------------------------CHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHHccCC---------------------------------cHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 99999999999986421 0257789999999998632 1222244
Q ss_pred hcCCCCCcchHHHHHHhhccCc--h-HhHHHHHHHHHhcCCccchHHHHHHHhhCcHHHHHHhccc
Q 000056 2413 ATSTGTPQVVPILMKAIGWQGG--S-ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDW 2475 (2526)
Q Consensus 2413 ~~~~~~~~~v~~l~~a~~~~~~--~-~la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd~ 2475 (2526)
... ++|.|++.+++... . ..||.+|..+.... ..+ +.-++.|.||.|+++|..
T Consensus 350 ~~~-----~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~-~~~----~~i~~~~~i~~Lv~lL~~ 405 (644)
T 2z6h_A 350 LHY-----GLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANH----APLREQGAIPRLVQLLVR 405 (644)
T ss_dssp HTT-----HHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGH----HHHHHTTHHHHHHHHHHH
T ss_pred Hcc-----ChHHHHHHhCccCchHHHHHHHHHHHHHccCH-HHH----HHHHHcCCHHHHHHHHhc
Confidence 332 38999999987643 2 38889998887642 222 444588999999999954
No 51
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.84 E-value=0.003 Score=85.77 Aligned_cols=358 Identities=15% Similarity=0.129 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHh
Q 000056 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLH 2106 (2526)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~ 2106 (2526)
+.++++|.++-...+.........+-+..|+..|... .+..++..|...|..++.+......|...+ ++..|+.+|.
T Consensus 168 ~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~--~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g-~I~~Lv~lL~ 244 (780)
T 2z6g_A 168 NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTSGTLHNLSHHREGLLAIFKSG-GIPALVNMLG 244 (780)
T ss_dssp HHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHTSHHHHHHHHHTT-HHHHHHHHTT
T ss_pred HHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC--CCHHHHHHHHHHHHHHhCCchhHHHHHHcC-CHHHHHHHHc
Confidence 4567777777665443222222335677788888642 245789999999999999988888888764 7888998887
Q ss_pred hC-cchHHHHHHHHHHhhcch-HHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHH-h
Q 000056 2107 YA-PACREGVLHVLYALASTP-ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLA-R 2183 (2526)
Q Consensus 2107 ~~-p~~~~~vL~~L~aL~s~t-~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~-K 2183 (2526)
.. +..+..++.+|..+++.+ ...+.....|++..|+.+|... +..+|..++.+|..+... .+..+..+. .
T Consensus 245 ~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~----~~~v~~~a~~aL~~La~~---~~e~~~~i~~~ 317 (780)
T 2z6g_A 245 SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT----NVKFLAITTDCLQILAYG---NQESKLIILAS 317 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTT---CHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC----CHHHHHHHHHHHHHHhcC---ChHHHHHHHHc
Confidence 53 455677999999999764 4444445789999999999752 567888898899877642 233322221 1
Q ss_pred hCcHHHHHHHhcCchhh----HHHhhcccCcCcccccCHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCccccccc
Q 000056 2184 FLPDGLVSVIRDGPGEA----VVSALEQTTETPELVWTPAMAASLSA--QISTMASDLYREQMKGRVVDWDVPEQASAQQ 2257 (2526)
Q Consensus 2184 fLP~~fvdamrdsP~~a----~v~~fds~~EnPELIWn~~mR~~v~~--~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~ 2257 (2526)
=..+.++..++++..+. ++.++..-..++ +.|..+.. .|..+. ....++. ++ .. .
T Consensus 318 ~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~------~~~~~i~~~g~l~~Ll-----~lL~~~~-----~~-~~-~- 378 (780)
T 2z6g_A 318 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS------SNKPAIVEAGGMQALG-----LHLTDPS-----QR-LV-Q- 378 (780)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST------THHHHHHHTTHHHHHG-----GGTTCSC-----HH-HH-H-
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh------HHHHHHHHhchHHHHH-----HHHcCCc-----hH-HH-H-
Confidence 11234444555432110 001111100011 01111100 000000 0000000 00 00 0
Q ss_pred ccCCCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhcc
Q 000056 2258 EMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGY 2337 (2526)
Q Consensus 2258 ~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~ 2337 (2526)
.+.++-..|.-..+.+.. ..+++..++..+... |.++..-...++..|....+.....+..
T Consensus 379 ------~a~~~L~~L~~~~~~~~~------~~~~i~~Lv~lL~~~-------d~~vr~~A~~aL~~L~~~~~~~~~~i~~ 439 (780)
T 2z6g_A 379 ------NCLWTLRNLSDAATKQEG------MEGLLGTLVQLLGSD-------DINVVTCAAGILSNLTCNNYKNKMMVCQ 439 (780)
T ss_dssp ------HHHHHHHHHHTTCTTCSC------CHHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTSSCHHHHHHHHT
T ss_pred ------HHHHHHHHHhccchhhhh------hhhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 000011111111111111 134666666666532 3445555677777777777777888888
Q ss_pred CCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhCCh----hHHHHHhh
Q 000056 2338 LGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAAST----TCAEAMAA 2413 (2526)
Q Consensus 2338 lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~s~----~Cv~ala~ 2413 (2526)
.|.+|+|+..|.+.+. .+.++..|++.|..|+... .+..++..
T Consensus 440 ~g~i~~Lv~lL~~~~~---------------------------------~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~ 486 (780)
T 2z6g_A 440 VGGIEALVRTVLRAGD---------------------------------REDITEPAICALRHLTSRHQDAEMAQNAVRL 486 (780)
T ss_dssp TTHHHHHHHHHHHHTT---------------------------------CHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHccCC---------------------------------HHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 9999999999986421 1257789999999998632 22334544
Q ss_pred cCCCCCcchHHHHHHhhccCc-h--HhHHHHHHHHHhcCCccchHHHHHHHhhCcHHHHHHhccc
Q 000056 2414 TSTGTPQVVPILMKAIGWQGG-S--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDW 2475 (2526)
Q Consensus 2414 ~~~~~~~~v~~l~~a~~~~~~-~--~la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd~ 2475 (2526)
.. ++|.|++.+..... . .-||.+|..+-.. +.-.....+.|+||.|+++|..
T Consensus 487 ~~-----~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-----~~~~~~i~~~g~i~~Lv~lL~~ 541 (780)
T 2z6g_A 487 HY-----GLPVVVKLLHPPSHWPLIKATVGLIRNLALC-----PANHAPLREQGAIPRLVQLLVR 541 (780)
T ss_dssp TT-----CHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-----HHHHHHHHHTTHHHHHHHHHHH
T ss_pred cC-----CHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-----HHHHHHHHHCCCHHHHHHHHHh
Confidence 33 39999999987654 3 3889999998763 1222455578999999999953
No 52
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.84 E-value=0.00057 Score=78.63 Aligned_cols=214 Identities=19% Similarity=0.191 Sum_probs=158.0
Q ss_pred ChhhhhcccCCCCCCCCChhhHHHHHH-HHhcCChhHHHHHHhhcchHHHHHHHHhh-CcchHHHHHHHHHHhhc-chHH
Q 000056 2052 KLLPLFECFSVPFAPDSNIPQLCLNVL-SLLTTCASCLEAMVADGSSLLLLLQMLHY-APACREGVLHVLYALAS-TPEL 2128 (2526)
Q Consensus 2052 ~L~~Lf~~L~~~~~~~~~vq~~aL~VL-~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~-~p~~~~~vL~~L~aL~s-~t~l 2128 (2526)
....++..|.. +++.++..|+..| +.++.+.+-.+.+...+ ++..|+.+|.. .++.+..++.+|..++. +++.
T Consensus 13 ~~~~~~~~L~s---~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g-~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 13 ELPQMTQQLNS---DDMQEQLSATRKFSQILSDGNEQIQAVIDAG-ALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp SHHHHHHHHHS---SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred hHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCCchHHHHHHcC-cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 34456666654 3567899999999 56666666666677654 78889988875 35566778999999997 6788
Q ss_pred HHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhccc
Q 000056 2129 AWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQT 2208 (2526)
Q Consensus 2129 Vkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~KfLP~~fvdamrdsP~~a~v~~fds~ 2208 (2526)
....++.|++..|+.+|... ++.+|..++.+|+.+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l----------------------------------------- 123 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSP----NEQILQEALWALSNI----------------------------------------- 123 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCS----CHHHHHHHHHHHHHH-----------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHh-----------------------------------------
Confidence 88889999999999999763 578999999999988
Q ss_pred CcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChHHHH
Q 000056 2209 TETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFL 2288 (2526)
Q Consensus 2209 ~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL 2288 (2526)
T Consensus 124 -------------------------------------------------------------------------------- 123 (252)
T 4db8_A 124 -------------------------------------------------------------------------------- 123 (252)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCc
Q 000056 2289 EGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSE 2368 (2526)
Q Consensus 2289 ~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~ 2368 (2526)
+. .. +.-.+.+...|.+|.|++.|.+.+
T Consensus 124 -----------~~----~~---------------------~~~~~~~~~~~~i~~L~~lL~~~~---------------- 151 (252)
T 4db8_A 124 -----------AS----GG---------------------NEQIQAVIDAGALPALVQLLSSPN---------------- 151 (252)
T ss_dssp -----------TT----SC---------------------HHHHHHHHHTTHHHHHHHGGGCSC----------------
T ss_pred -----------hc----CC---------------------chHHHHHHHCCCHHHHHHHHhCCC----------------
Confidence 00 00 000133334477788888876421
Q ss_pred cccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhC-ChhHHHHHhhcCCCCCcchHHHHHHhhccCch--HhHHHHHHHH
Q 000056 2369 ADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGTPQVVPILMKAIGWQGGS--ILALETLKRV 2445 (2526)
Q Consensus 2369 ~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~-s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~--~la~etL~r~ 2445 (2526)
+.++..|+..|..|+. +..+.+.+.+.+. +|.|++.+...... ..|+.+|..+
T Consensus 152 -------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-----i~~L~~ll~~~~~~v~~~a~~~L~~l 207 (252)
T 4db8_A 152 -------------------EQILQEALWALSNIASGGNEQIQAVIDAGA-----LPALVQLLSSPNEQILQEALWALSNI 207 (252)
T ss_dssp -------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTC-----HHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHcCChHHHHHHHHCCC-----HHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 3578899999999997 5677777776554 99999999876433 3899999998
Q ss_pred HhcCCccchHHHHHHHhhCcHHHHHHhcc
Q 000056 2446 VVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2446 ~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
... .+......++.|.|+.|+.+|.
T Consensus 208 ~~~----~~~~~~~~~~~g~i~~L~~ll~ 232 (252)
T 4db8_A 208 ASG----GNEQKQAVKEAGALEKLEQLQS 232 (252)
T ss_dssp TTS----CHHHHHHHHHTTHHHHHHTTTT
T ss_pred hcC----CHHHHHHHHHCCcHHHHHHHhC
Confidence 863 2455666778999999999994
No 53
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.83 E-value=0.0024 Score=86.70 Aligned_cols=135 Identities=7% Similarity=0.051 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhh
Q 000056 2028 FGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY 2107 (2526)
Q Consensus 2028 maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~ 2107 (2526)
-++.||.||...+++....+...+.+++|..+|... +..|+..|.++|..++.+.++...+......+..|+.++..
T Consensus 600 eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~---~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s 676 (810)
T 3now_A 600 ESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED---HLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCED 676 (810)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC---CTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcC
Confidence 468899999999887777777778899999999763 57899999999999999999888877434578888888875
Q ss_pred C-cchHHHHHHHHHHhhc-chHHHHHHHH-cCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhc
Q 000056 2108 A-PACREGVLHVLYALAS-TPELAWAAAK-HGGVVYILELLLPSQQETPLQQRAAAASLLGKLVG 2169 (2526)
Q Consensus 2108 ~-p~~~~~vL~~L~aL~s-~t~lVkqal~-~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~a 2169 (2526)
. .+....+.-+|..+++ ++..++..+. .|++..|.+++.+. +..+|..++..|..|..
T Consensus 677 ~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~----d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 677 EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP----SPAVQHRGIVIILNMIN 737 (810)
T ss_dssp SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS----SHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC----CHHHHHHHHHHHHHHHh
Confidence 3 2344557778888887 6777888888 89999999998753 67889999999999876
No 54
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.81 E-value=0.00086 Score=83.30 Aligned_cols=326 Identities=13% Similarity=0.080 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCC-hhHHHHHHhhcchHHHHHHHH
Q 000056 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTC-ASCLEAMVADGSSLLLLLQML 2105 (2526)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n-~~CVeaiA~~~~vl~~Ll~lL 2105 (2526)
..++.+|.++...++.....+...+.++.|+.+|.. +++.++..|+.+|..++.. ..+.+.+...+ ++..|+.++
T Consensus 83 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~~l 158 (450)
T 2jdq_A 83 FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS---EFEDVQEQAVWALGNIAGDSTMCRDYVLDCN-ILPPLLQLF 158 (450)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-CHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHccCCHHHHHHHHHCC-CHHHHHHHh
Confidence 456888888888776655555556778889999875 3568999999999888865 45666666544 788899998
Q ss_pred hh--CcchHHHHHHHHHHhhcch-HHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 000056 2106 HY--APACREGVLHVLYALASTP-ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLA 2182 (2526)
Q Consensus 2106 ~~--~p~~~~~vL~~L~aL~s~t-~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~ 2182 (2526)
.. .++.+..++.+|..++... .-....+..|++..|+.++... ++.+|..++..|+.+..+. .+.......
T Consensus 159 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~----~~~v~~~a~~~L~~l~~~~--~~~~~~~~~ 232 (450)
T 2jdq_A 159 SKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS----DTDVLADACWALSYLSDGP--NDKIQAVID 232 (450)
T ss_dssp TSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCC----CHHHHHHHHHHHHHHTSSS--HHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHCCC--cHHHHHHHH
Confidence 74 3466777888998888542 1111222378888999988642 5789999999999998642 123322222
Q ss_pred hhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccCCC
Q 000056 2183 RFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDE 2262 (2526)
Q Consensus 2183 KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~E 2262 (2526)
.=+-+. .+.++.+ . +.+.|......+..++.. . +...
T Consensus 233 ~~~i~~------------L~~ll~~--~------~~~v~~~a~~~L~~l~~~--------~-------~~~~-------- 269 (450)
T 2jdq_A 233 AGVCRR------------LVELLMH--N------DYKVVSPALRAVGNIVTG--------D-------DIQT-------- 269 (450)
T ss_dssp TTTHHH------------HHHHTTC--S------CHHHHHHHHHHHHHHTTS--------C-------HHHH--------
T ss_pred cCcHHH------------HHHHHCC--C------chhHHHHHHHHHHHHhhC--------C-------hHHH--------
Confidence 212222 3344431 1 234555555555554321 0 0000
Q ss_pred cEEeeeeehhhccCCCCCCCChHHHH-HHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCCh
Q 000056 2263 PQVGGIYVRLFLKDPKFPLRNPKRFL-EGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYV 2341 (2526)
Q Consensus 2263 l~VGGVYlRLFl~nP~w~LR~PK~FL-~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~l 2341 (2526)
+.++ .+++..++..+... +..+..-...++..+....+.....+-..|-+
T Consensus 270 ----------------------~~~~~~~~l~~L~~ll~~~-------~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l 320 (450)
T 2jdq_A 270 ----------------------QVILNCSALQSLLHLLSSP-------KESIKKEACWTISNITAGNRAQIQTVIDANIF 320 (450)
T ss_dssp ----------------------HHHHTTTHHHHHHHHTTCS-------SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred ----------------------HHHHHCccHHHHHHHHcCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 0000 13556666666542 12233334445555555455555556667999
Q ss_pred HHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhC--ChhHHHHHhhcCCCCC
Q 000056 2342 PKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA--STTCAEAMAATSTGTP 2419 (2526)
Q Consensus 2342 pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~--s~~Cv~ala~~~~~~~ 2419 (2526)
|.|+..|...+ +.++..+...|..|+. +..+++.+...++
T Consensus 321 ~~L~~~l~~~~-----------------------------------~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~--- 362 (450)
T 2jdq_A 321 PALISILQTAE-----------------------------------FRTRKEAAWAITNATSGGSAEQIKYLVELGC--- 362 (450)
T ss_dssp HHHHHHHHHSC-----------------------------------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHTC---
T ss_pred HHHHHHHhcCC-----------------------------------HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC---
Confidence 99999988532 3688999999999975 5667777766544
Q ss_pred cchHHHHHHhhccCch--HhHHHHHHHHHhcCCc-------cchHHHHHHHhhCcHHHHHHhcc
Q 000056 2420 QVVPILMKAIGWQGGS--ILALETLKRVVVAGNR-------ARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2420 ~~v~~l~~a~~~~~~~--~la~etL~r~~~~~~r-------~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
+|.|+..+...... ..|+++|..++..+.. ....+...-.+.|.++.|..+++
T Consensus 363 --i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~ 424 (450)
T 2jdq_A 363 --IKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQS 424 (450)
T ss_dssp --HHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHC
T ss_pred --HHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHc
Confidence 99999999875433 2889999988874211 01234445556777888887763
No 55
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.81 E-value=0.0025 Score=83.72 Aligned_cols=353 Identities=13% Similarity=0.105 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcC--ChhHHHHHHhhcchHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT--CASCLEAMVADGSSLLLLLQ 2103 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~--n~~CVeaiA~~~~vl~~Ll~ 2103 (2526)
...+..+|.++-..++.....+...|.+++|..+|... +..++..|...|..|+. +.++-..|.+.+ .+..|+.
T Consensus 65 q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~---~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~G-aIp~LV~ 140 (584)
T 3l6x_A 65 KSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP---KKEVHLGACGALKNISFGRDQDNKIAIKNCD-GVPALVR 140 (584)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS---SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC---CHHHHHHHHHHHHHHHccCCHHHHHHHHHcC-CHHHHHH
Confidence 34567889999888888777777889999999999863 56899999999999997 588888898866 8899999
Q ss_pred HHhhCc--chHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhc-----CC---------CCCCcHHHHHHHHHHHHHH
Q 000056 2104 MLHYAP--ACREGVLHVLYALASTPELAWAAAKHGGVVYILELLL-----PS---------QQETPLQQRAAAASLLGKL 2167 (2526)
Q Consensus 2104 lL~~~p--~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~-----~s---------~e~~~~~~R~~aA~lL~kM 2167 (2526)
+|.+.+ +....+..+|..|+++++. +..+..||+..|++++. .. .......++..++.+|.-|
T Consensus 141 LL~s~~~~~~~e~aa~aL~nLS~~~~~-k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NL 219 (584)
T 3l6x_A 141 LLRKARDMDLTEVITGTLWNLSSHDSI-KMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNV 219 (584)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHTTSGGG-HHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHhCCchh-hHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 998643 4456677888999886654 34444678888888761 00 0112468899999999999
Q ss_pred hcCCCCChHHHHHHHhh--CcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 000056 2168 VGQPMHGPRVAITLARF--LPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVV 2245 (2526)
Q Consensus 2168 ~aDklhGPrV~~~L~Kf--LP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~ 2245 (2526)
.. +++..+..+.+. +.+.++..++..- . ...| ++...+...-.+.+++.....+.. +. .
T Consensus 220 s~---~~~~~R~~i~~~~Gli~~LV~~L~~~~-----~-----~~~~----~~~~~enav~aL~NLs~~~~~e~~-~~-~ 280 (584)
T 3l6x_A 220 SS---ERSEARRKLRECDGLVDALIFIVQAEI-----G-----QKDS----DSKLVENCVCLLRNLSYQVHREIP-QA-E 280 (584)
T ss_dssp TS---SCHHHHHHHHHSTTHHHHHHHHHHHHH-----H-----TTCC----SCHHHHHHHHHHHHHHTTHHHHST-TC-C
T ss_pred hc---CCHHHHHHHHHcCCcHHHHHHHHHHhh-----c-----ccCc----cHHHHHHHHHHHHHhhcccccccc-ch-h
Confidence 86 455544444332 2223333333210 0 0111 333444444444444433222210 00 0
Q ss_pred cccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChHHH--H--HHHHHHHHHHHhccCCCCCCCCCchHHHHHHHH
Q 000056 2246 DWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRF--L--EGLLDQYLSSIAATHYDTQAIDPELPLLLSAAL 2321 (2526)
Q Consensus 2246 ~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~F--L--~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Al 2321 (2526)
.|.- . ... +. + |. ..++|+-. | .+.+..++..+.... +.++++-.+.||
T Consensus 281 ~~~~--~--~~~---~~--~-~~-----------~~~~~~Gve~L~~~~~v~~Ll~LL~~s~------~~~v~E~Aa~AL 333 (584)
T 3l6x_A 281 RYQE--A--APN---VA--N-NT-----------GTSPARGYELLFQPEVVRIYISLLKESK------TPAILEASAGAI 333 (584)
T ss_dssp C-----------------------------------CCCCGGGGGGSHHHHHHHHHHHHHCC------CHHHHHHHHHHH
T ss_pred hhhh--h--ccc---cc--c-cc-----------cccCchhHHHHhcccHHHHHHHHHccCC------CHHHHHHHHHHH
Confidence 1100 0 000 00 0 11 23444421 1 245677777776421 234556667777
Q ss_pred HHHHhcCchhh----hhhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHH
Q 000056 2322 VSLLRVHPALA----DHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRV 2397 (2526)
Q Consensus 2322 v~LL~~qp~La----D~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~v 2397 (2526)
..|.......+ ..|-..|.+|.|+.+|.+.+ +.+...+...
T Consensus 334 ~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~-----------------------------------~~v~~~A~~a 378 (584)
T 3l6x_A 334 QNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH-----------------------------------ERVVKAASGA 378 (584)
T ss_dssp HHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC-----------------------------------HHHHHHHHHH
T ss_pred HHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC-----------------------------------HHHHHHHHHH
Confidence 77766543222 23445677999999987643 2577889999
Q ss_pred HHHhhCChhHHHHHhhcCCCCCcchHHHHHHhhccC---------c-hHhHHHHHHHHHhcCCccchHHHHHHHhhCcHH
Q 000056 2398 LHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQG---------G-SILALETLKRVVVAGNRARDALVAQGLKVGLVD 2467 (2526)
Q Consensus 2398 lh~ls~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~---------~-~~la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~ 2467 (2526)
|.-||.....-+.|.+ . +||.|+.-..+.. + ..-||-||..+...+ +.-.+.-.+.|.||
T Consensus 379 L~nLs~~~~~~~~I~~-g-----~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~----~~~~~~I~~~g~I~ 448 (584)
T 3l6x_A 379 LRNLAVDARNKELIGK-H-----AIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN----LEAAKKLRETQGIE 448 (584)
T ss_dssp HHHHHTTCSCHHHHHH-H-----HHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC----HHHHHHHHHTTHHH
T ss_pred HHHHhCChhHHHHHHh-C-----CHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC----HHHHHHHHHCCChH
Confidence 9999988776677743 3 4888888776541 1 126888888888742 34455566899999
Q ss_pred HHHHhcc
Q 000056 2468 VLLGLLD 2474 (2526)
Q Consensus 2468 ~LL~lLd 2474 (2526)
.|..||.
T Consensus 449 ~Lv~LL~ 455 (584)
T 3l6x_A 449 KLVLINK 455 (584)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999994
No 56
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.69 E-value=0.0097 Score=80.85 Aligned_cols=299 Identities=15% Similarity=0.154 Sum_probs=198.7
Q ss_pred hhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhh-CcchHHHHHHHHHHhhcch--------
Q 000056 2056 LFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY-APACREGVLHVLYALASTP-------- 2126 (2526)
Q Consensus 2056 Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~-~p~~~~~vL~~L~aL~s~t-------- 2126 (2526)
+..+|... ..+..+.+.|++.|.-||.....-+.+..+..+++.|+.+|.+ .+.....++.+|..++..+
T Consensus 382 l~~lL~~~-~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~ 460 (810)
T 3now_A 382 CRRFLIKP-GKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPE 460 (810)
T ss_dssp HHHHHHCS-SCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCS
T ss_pred HHHHhcCC-CCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHH
Confidence 44555543 1256899999999999998888878888766688999999875 4456677999999998633
Q ss_pred ---------------------HH----HHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHH
Q 000056 2127 ---------------------EL----AWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITL 2181 (2526)
Q Consensus 2127 ---------------------~l----Vkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L 2181 (2526)
+. ++..++.|++..|..++... .+.+|+++|.+|..+..| +.-+..+
T Consensus 461 l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~----s~~vqe~Aa~aL~NLA~d----~~~r~~V 532 (810)
T 3now_A 461 MIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE----SHNSQELIARVLNAVCGL----KELRGKV 532 (810)
T ss_dssp CGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC----CHHHHHHHHHHHHHHHTS----HHHHHHH
T ss_pred HHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC----CHHHHHHHHHHHHHHcCC----HHHHHHH
Confidence 12 36778889898999988752 689999999999999865 2222222
Q ss_pred HhhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccCC
Q 000056 2182 ARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRD 2261 (2526)
Q Consensus 2182 ~KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~ 2261 (2526)
.+ .+.-...|+++.+. ++..|......+.+++.. .+|...|.
T Consensus 533 v~-----------~Gaip~Lv~LL~s~--------~~~~k~~Aa~AL~nL~~~------~~p~~~~~------------- 574 (810)
T 3now_A 533 VQ-----------EGGVKALLRMALEG--------TEKGKRHATQALARIGIT------INPEVSFS------------- 574 (810)
T ss_dssp HH-----------TTHHHHHHHHHHSS--------CHHHHHHHHHHHHHHHHH------SCHHHHTT-------------
T ss_pred HH-----------CCCHHHHHHHHccC--------CHHHHHHHHHHHHHHhcC------CChhhhhc-------------
Confidence 22 11112234444332 124455555555555432 11111110
Q ss_pred CcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchH-HHHHHHHHHHHhcCchhhhhhccCCC
Q 000056 2262 EPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELP-LLLSAALVSLLRVHPALADHVGYLGY 2340 (2526)
Q Consensus 2262 El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll-~llt~Alv~LL~~qp~LaD~vp~lG~ 2340 (2526)
+ +-..+.+..+++++... .. .+. .-...|+..|....+.....|...|.
T Consensus 575 -----~------------------~~~~~aIppLv~LL~~~---~~----~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~ 624 (810)
T 3now_A 575 -----G------------------QRSLDVIRPLLNLLQQD---CT----ALENFESLMALTNLASMNESVRQRIIKEQG 624 (810)
T ss_dssp -----T------------------HHHHHTHHHHHHTTSTT---SC----HHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred -----c------------------hhhhcHHHHHHHHhCCC---Cc----HHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Confidence 0 00122344444544321 00 111 11356788888877888889999999
Q ss_pred hHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhCChhHHHHHhhcCCCCCc
Q 000056 2341 VPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQ 2420 (2526)
Q Consensus 2341 lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~s~~Cv~ala~~~~~~~~ 2420 (2526)
+|+|+.+|.+.+ +.|+..|.++|..|+.+..+...+.. + ..
T Consensus 625 l~~Lv~LL~s~~-----------------------------------~~Vq~~A~~~L~NLa~~~~~~~~~v~-~---~g 665 (810)
T 3now_A 625 VSKIEYYLMEDH-----------------------------------LYLTRAAAQCLCNLVMSEDVIKMFEG-N---ND 665 (810)
T ss_dssp HHHHHHHHHSCC-----------------------------------TTHHHHHHHHHHHHTTSHHHHHHHHS-S---SS
T ss_pred HHHHHHHHcCCC-----------------------------------HHHHHHHHHHHHHHhCChHHHHHHHh-c---cC
Confidence 999999999754 24788999999999999988877773 1 24
Q ss_pred chHHHHHHhhccCchH--hHHHHHHHHHhcCCccchHHHHHHHh-hCcHHHHHHhcc
Q 000056 2421 VVPILMKAIGWQGGSI--LALETLKRVVVAGNRARDALVAQGLK-VGLVDVLLGLLD 2474 (2526)
Q Consensus 2421 ~v~~l~~a~~~~~~~~--la~etL~r~~~~~~r~~~~Lv~qaL~-~~lv~~LL~lLd 2474 (2526)
++++|.+-++.....+ -||=+|.-+-+. .+..++.-++ .|.||.|.++|.
T Consensus 666 ~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~----s~~~~~~ii~~~g~I~~Lv~LL~ 718 (810)
T 3now_A 666 RVKFLALLCEDEDEETATACAGALAIITSV----SVKCCEKILAIASWLDILHTLIA 718 (810)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHTSTTHHHHHHHHHT
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCC----CHHHHHHHHHHcCCHHHHHHHHC
Confidence 5999999998755433 788888887763 2345555666 799999999995
No 57
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.61 E-value=0.0066 Score=69.11 Aligned_cols=214 Identities=19% Similarity=0.207 Sum_probs=153.8
Q ss_pred HHHHHHHHhh-CcchHHHHHHHHHHhhcch-HHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCCh
Q 000056 2098 LLLLLQMLHY-APACREGVLHVLYALASTP-ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGP 2175 (2526)
Q Consensus 2098 l~~Ll~lL~~-~p~~~~~vL~~L~aL~s~t-~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGP 2175 (2526)
+..|+.+|.+ .++.+..++..|..++... +.....++.|++..|+++|... ++.+|..++..|+.+..+ .+
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~---~~ 76 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST----DSEVQKEAARALANIASG---PD 76 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHTTS---CH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHcC---Ch
Confidence 4566667764 3455666888888888655 4777888899999999998753 588999999999998664 23
Q ss_pred HHHHHHHhhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCccccc
Q 000056 2176 RVAITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASA 2255 (2526)
Q Consensus 2176 rV~~~L~KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~ 2255 (2526)
..+..+.+ .. ++.
T Consensus 77 ~~~~~~~~------------~~---~i~---------------------------------------------------- 89 (252)
T 4hxt_A 77 EAIKAIVD------------AG---GVE---------------------------------------------------- 89 (252)
T ss_dssp HHHHHHHH------------TT---HHH----------------------------------------------------
T ss_pred HHHHHHHH------------CC---CHH----------------------------------------------------
Confidence 33222211 10 011
Q ss_pred ccccCCCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhh
Q 000056 2256 QQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHV 2335 (2526)
Q Consensus 2256 y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~v 2335 (2526)
.++..+... |+++..-...++..|....|...+.+
T Consensus 90 --------------------------------------~l~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~ 124 (252)
T 4hxt_A 90 --------------------------------------VLVKLLTST-------DSEVQKEAARALANIASGPDEAIKAI 124 (252)
T ss_dssp --------------------------------------HHHHHTTCS-------SHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred --------------------------------------HHHHHHcCC-------CHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 133333321 23455566777777777888888888
Q ss_pred ccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhC-ChhHHHHHhhc
Q 000056 2336 GYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAAT 2414 (2526)
Q Consensus 2336 p~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~-s~~Cv~ala~~ 2414 (2526)
...|.+|.|+..|.+.+ +.++..|+.+|..|+. ++.+.+.+.+.
T Consensus 125 ~~~~~i~~L~~~l~~~~-----------------------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 169 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTD-----------------------------------SEVQKEAARALANIASGPDEAIKAIVDA 169 (252)
T ss_dssp HHTTHHHHHHHHTTCSC-----------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHcCCC-----------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 88999999999987432 3578999999999997 67777888876
Q ss_pred CCCCCcchHHHHHHhhccCch--HhHHHHHHHHHhcCCccchHHHHHHHhhCcHHHHHHhcc
Q 000056 2415 STGTPQVVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2415 ~~~~~~~v~~l~~a~~~~~~~--~la~etL~r~~~~~~r~~~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
+. +|.|+..+...... ..|+.+|..+... .+.......+.|.++.|+++|+
T Consensus 170 ~~-----i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~l~~~~~i~~L~~ll~ 222 (252)
T 4hxt_A 170 GG-----VEVLVKLLTSTDSEVQKEAARALANIASG----PTSAIKAIVDAGGVEVLQKLLT 222 (252)
T ss_dssp TH-----HHHHHHHTTCSCHHHHHHHHHHHHHHTTS----BHHHHHHHHHTTHHHHHHHGGG
T ss_pred cC-----HHHHHHHHCCCCHHHHHHHHHHHHHHHcC----CHHHHHHHHHCCCHHHHHHHHC
Confidence 54 99999999875433 3889999988863 3556777778999999999994
No 58
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.49 E-value=0.0092 Score=76.01 Aligned_cols=138 Identities=17% Similarity=0.100 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhhCccch-----hhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLA-----SIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLL 2100 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la-----~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~ 2100 (2526)
.+-+.-||.|+-..+.... ..+...+.++.|..+|... +..+++.|...|+.++.+......|.+ + ++..
T Consensus 301 ~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~---~~~v~~~A~~aL~nls~~~~~~~~i~~-~-~i~~ 375 (457)
T 1xm9_A 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG---NSDVVRSGASLLSNMSRHPLLHRVMGN-Q-VFPE 375 (457)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS---CHHHHHHHHHHHHHHHTSGGGHHHHHH-H-THHH
T ss_pred HHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC---CHhHHHHHHHHHHHHhcCHHHHHHHHH-h-hhHH
Confidence 3556788888887654422 1233457788999999763 568999999999999999888777765 3 7888
Q ss_pred HHHHHhhC-c------chHHHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCC
Q 000056 2101 LLQMLHYA-P------ACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQP 2171 (2526)
Q Consensus 2101 Ll~lL~~~-p------~~~~~vL~~L~aL~s-~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDk 2171 (2526)
|..+|... + +....++.+|..+.. +++..+...++||+..|.+++... .+..++..|+.+|..|-.++
T Consensus 376 Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~---~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS---ASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTTSSST
T ss_pred HHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCC---CcHHHHHHHHHHHHHHHcch
Confidence 99888753 1 234457777777654 667888889999999999998764 25789999999999988754
No 59
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.26 E-value=0.00014 Score=89.39 Aligned_cols=51 Identities=27% Similarity=0.466 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCc------hHHHHHHHHHHHHHhhccccCCCCC
Q 000056 1538 ENIDEEKLKRQYRKLAMKYHPDKNPE------GREKFLAVQKAYERLQATMQGLQGP 1588 (2526)
Q Consensus 1538 ~~a~e~~IKkAYRkLa~k~HPDKnp~------a~ekF~~I~~AYEvLsd~~~r~~~p 1588 (2526)
+.++.++++++|+++++++|||+.++ ++++|+.|++|||+|+|++.+..||
T Consensus 392 ~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd 448 (450)
T 2y4t_A 392 RNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 448 (450)
T ss_dssp TTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC----
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhcc
Confidence 35677899999999999999999874 5779999999999999987444443
No 60
>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1
Probab=97.23 E-value=0.00026 Score=69.62 Aligned_cols=55 Identities=15% Similarity=0.345 Sum_probs=49.7
Q ss_pred CCcceeEeecCCCcccccccHHHHHHHHhcCCcCcCCceecccCcchhhchhhhhH
Q 000056 1169 EPFKEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKLRDIREL 1224 (2526)
Q Consensus 1169 ~~~KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~W~~l~~ipeL 1224 (2526)
..+..|||.+..|+.+|||+..+|++.++.|-.+++.+||+.|-.+|+++. +.+|
T Consensus 15 ~~~~~W~Y~Dp~g~iQGPFs~~~M~~W~~~GyF~~~L~Vrr~~~~~~~~i~-L~dl 69 (78)
T 1wh2_A 15 KEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESAVL-LTDV 69 (78)
T ss_dssp SSSCCEEEECTTSCEEEEECHHHHHHHHTTTSSCSCCEEEETTSCTTSCEE-HHHH
T ss_pred cccCeEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEeCCCCcceeh-HHHH
Confidence 346899999999999999999999999999999999999999999998876 5555
No 61
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.16 E-value=0.084 Score=67.71 Aligned_cols=310 Identities=14% Similarity=0.081 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHhhCccchhhccccC----------ChhhhhcccCCCCC--C--CCChhh-------HHHHHHHHhcCC
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKE----------KLLPLFECFSVPFA--P--DSNIPQ-------LCLNVLSLLTTC 2084 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~----------~L~~Lf~~L~~~~~--~--~~~vq~-------~aL~VL~~ls~n 2084 (2526)
...+..||.|+...+|+.-....-.+ +...++.++..... + ...++. .|+-.|..++.+
T Consensus 99 ~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~ 178 (458)
T 3nmz_A 99 RARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 178 (458)
T ss_dssp HHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC
Confidence 45678999999999999433311111 12334555654320 0 011332 788889999999
Q ss_pred hhHHHHHHhhcchHHHHHHHHhh------------CcchHHHHHHHHHHhhcchHHHHHHH-HcCC-HhhhHHhhcCCCC
Q 000056 2085 ASCLEAMVADGSSLLLLLQMLHY------------APACREGVLHVLYALASTPELAWAAA-KHGG-VVYILELLLPSQQ 2150 (2526)
Q Consensus 2085 ~~CVeaiA~~~~vl~~Ll~lL~~------------~p~~~~~vL~~L~aL~s~t~lVkqal-~~Gg-vlyLL~LL~~s~e 2150 (2526)
.+|-..|...+ .+..|+.+|.. .++....+..+|..|+..+.-.+..+ ..|| +..|+.+|...
T Consensus 179 ~e~R~~i~~~G-~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-- 255 (458)
T 3nmz_A 179 EEHRHAMNELG-GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-- 255 (458)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS--
T ss_pred HHHHHHHHHCC-CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCC--
Confidence 99999998766 78888888842 23445568888999998777666666 4566 88999998742
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHH
Q 000056 2151 ETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQIST 2230 (2526)
Q Consensus 2151 ~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~ 2230 (2526)
++.+++.++.+|.-+... ..+..+..+.. .+.-...|.++-.. .+ .+++......+.+
T Consensus 256 --~~~v~~~A~~aL~nLs~~--~~~~~k~~I~~-----------~GaI~~LV~lLl~s-~~------~~v~~~A~~aL~n 313 (458)
T 3nmz_A 256 --SEDLQQVIASVLRNLSWR--ADVNSKKTLRE-----------VGSVKALMECALEV-KK------ESTLKSVLSALWN 313 (458)
T ss_dssp --CHHHHHHHHHHHHHHTSS--CCHHHHHHHHH-----------TTHHHHHHHHHTTC-CS------HHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHhcC--CCHHHHHHHHH-----------cCCHHHHHHHHhcC-CC------HHHHHHHHHHHHH
Confidence 578999999999998642 12443333222 11111223332111 11 2334444444444
Q ss_pred HHHH--HHHHHhcCCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCC
Q 000056 2231 MASD--LYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQA 2308 (2526)
Q Consensus 2231 ~~~~--~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~ 2308 (2526)
++.. -.+.+. + . -.+.+..++..+...+.. +
T Consensus 314 Ls~~~~~nk~~I-----------------------~----------~------------~~Gal~~Lv~LL~~~~~~-~- 346 (458)
T 3nmz_A 314 LSAHCTENKADI-----------------------C----------A------------VDGALAFLVGTLTYRSQT-N- 346 (458)
T ss_dssp HHHHCHHHHHHH-----------------------H----------H------------STTHHHHHHHHTTCCCSS-S-
T ss_pred HccCCHHHHHHH-----------------------H----------H------------hcCcHHHHHHHhcCCCCc-c-
Confidence 4331 001110 0 0 012233344444332110 0
Q ss_pred CCCchHHHHHHHHHHHHh---cCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCC
Q 000056 2309 IDPELPLLLSAALVSLLR---VHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQT 2385 (2526)
Q Consensus 2309 ~d~~ll~llt~Alv~LL~---~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2385 (2526)
+.++.+-.+.++..|-. ..+.-...+...|.+|.|+.+|.+.+
T Consensus 347 -~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~--------------------------------- 392 (458)
T 3nmz_A 347 -TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS--------------------------------- 392 (458)
T ss_dssp -TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC---------------------------------
T ss_pred -hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC---------------------------------
Confidence 01233333444444443 46777778888999999999987422
Q ss_pred hhhhhhhhHHHHHHHhh-CChhHHHHHhhcCCCCCcchHHHHHHhhccCchH--hHHHHHHHHHhc
Q 000056 2386 PQERVRLSCLRVLHQLA-ASTTCAEAMAATSTGTPQVVPILMKAIGWQGGSI--LALETLKRVVVA 2448 (2526)
Q Consensus 2386 ~~~~~~~s~l~vlh~ls-~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~~--la~etL~r~~~~ 2448 (2526)
..+++.|...|..|+ .+..+.+.|.+.++ ||+|+..+......+ .|+.+|..+.+.
T Consensus 393 --~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~-----I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 393 --LTIVSNACGTLWNLSARNPKDQEALWDMGA-----VSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp --HHHHHHHHHHHHHHHSSCHHHHHHHHHHTH-----HHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred --hHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-----HHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 247789999999999 68999999998877 999999987654443 899999999985
No 62
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.13 E-value=0.0094 Score=66.64 Aligned_cols=177 Identities=20% Similarity=0.210 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhc-CChhHHHHHHhhcchHHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLT-TCASCLEAMVADGSSLLLLLQM 2104 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls-~n~~CVeaiA~~~~vl~~Ll~l 2104 (2526)
...++.+|.++-..++.....+...+.++.|..+|... +..++..|+.+|..++ .+..+.+.+...+ .+..|+.+
T Consensus 29 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g-~i~~L~~l 104 (210)
T 4db6_A 29 LQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQIQAVIDAG-ALPALVQL 104 (210)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCcHHHHHHHHCC-CHHHHHHH
Confidence 45678899999888888777777778899999999763 5679999999999998 5778888787655 78888888
Q ss_pred Hhh-CcchHHHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 000056 2105 LHY-APACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLA 2182 (2526)
Q Consensus 2105 L~~-~p~~~~~vL~~L~aL~s-~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~ 2182 (2526)
|.. .++.+..++.+|..++. +++..+..+..|++..|++++... ++.+|..++.+|..+..+ +|..+..+.
T Consensus 105 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~v~~~a~~aL~~l~~~---~~~~~~~~~ 177 (210)
T 4db6_A 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASG---GNEQKQAVK 177 (210)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTS---CHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC----CHHHHHHHHHHHHHHHcC---CcHHHHHHH
Confidence 875 34556678889999985 556677788999999999998753 678999999999999763 344332222
Q ss_pred hhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHH
Q 000056 2183 RFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMA 2232 (2526)
Q Consensus 2183 KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~ 2232 (2526)
. .+.-...++++.+ + +.+.|......+.+++
T Consensus 178 ~-----------~g~i~~L~~ll~~--~------~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 178 E-----------AGALEKLEQLQSH--E------NEKIQKEAQEALEKLQ 208 (210)
T ss_dssp H-----------TTHHHHHHHGGGC--S------CHHHHHHHHHHHHHHC
T ss_pred H-----------CCCHHHHHHHHhC--C------CHHHHHHHHHHHHHHh
Confidence 1 2222334455542 2 4456777777776654
No 63
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.09 E-value=0.11 Score=66.50 Aligned_cols=137 Identities=17% Similarity=0.116 Sum_probs=94.4
Q ss_pred HHHHHHHHHhhCccchhhcc-ccCChhhhhcccCCCCCCC-CChhhHHHHHHHHhc----CChhHHHHHHhhcchHHHHH
Q 000056 2029 GLTSLQNILTSNPNLASIFS-TKEKLLPLFECFSVPFAPD-SNIPQLCLNVLSLLT----TCASCLEAMVADGSSLLLLL 2102 (2526)
Q Consensus 2029 aL~AL~nLL~~nP~la~~~~-s~~~L~~Lf~~L~~~~~~~-~~vq~~aL~VL~~ls----~n~~CVeaiA~~~~vl~~Ll 2102 (2526)
++.||.||-..+++....+. ..|.++.|..+|....... ..++..|.-+|..++ .+.+..+.|...+ .+..|+
T Consensus 307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G-~i~~Lv 385 (458)
T 3nmz_A 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN-CLQTLL 385 (458)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc-cHHHHH
Confidence 34455554443333323332 4455666666665421110 137777878887777 5888888887755 788898
Q ss_pred HHHhhC-cchHHHHHHHHHHhh-cchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000056 2103 QMLHYA-PACREGVLHVLYALA-STPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2526)
Q Consensus 2103 ~lL~~~-p~~~~~vL~~L~aL~-s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aD 2170 (2526)
.+|... .+....+.-+|..|+ .+++-.+..++.|++..|.+++... +..+|..|+.+|..+..+
T Consensus 386 ~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~----~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 386 QHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK----HKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS----SHHHHHHHHHHHHHHHTC
T ss_pred HHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHcC
Confidence 888753 344566888899998 4678888889999999999998643 578899999999999875
No 64
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.98 E-value=0.15 Score=63.25 Aligned_cols=262 Identities=13% Similarity=0.065 Sum_probs=167.8
Q ss_pred hHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhh------------CcchHHHHHHHHHHhhcchHHHHHHH-HcCC-
Q 000056 2072 QLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY------------APACREGVLHVLYALASTPELAWAAA-KHGG- 2137 (2526)
Q Consensus 2072 ~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~------------~p~~~~~vL~~L~aL~s~t~lVkqal-~~Gg- 2137 (2526)
..|+..|..++.+.+|-..|.+.+ .+..|+.+|.. .++....+..+|..|+..+.-.+..+ ..||
T Consensus 50 ~~A~~aL~nls~d~e~R~~i~~~G-~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 128 (354)
T 3nmw_A 50 CPAVCVLMKLSFDEEHRHAMNELG-GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128 (354)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcC-CHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCc
Confidence 467899999999999999998866 78888888842 23455568888999997776566665 4666
Q ss_pred HhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHh--hCcHHHHHHHhcCchhhHHHhhcccCcCcccc
Q 000056 2138 VVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLAR--FLPDGLVSVIRDGPGEAVVSALEQTTETPELV 2215 (2526)
Q Consensus 2138 vlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~K--fLP~~fvdamrdsP~~a~v~~fds~~EnPELI 2215 (2526)
+..|+.+|... ++.++..++.+|.-+... ..++.+..+.+ -+| .+++.+..++ +
T Consensus 129 Ip~LV~LL~s~----~~~v~~~A~~aL~nLs~~--~~~~~k~~i~~~G~Ip-~Lv~lL~~~~-------------~---- 184 (354)
T 3nmw_A 129 MRALVAQLKSE----SEDLQQVIASVLRNLSWR--ADVNSKKTLREVGSVK-ALMECALEVK-------------K---- 184 (354)
T ss_dssp HHHHHHGGGCS----CHHHHHHHHHHHHHHHTT--CCHHHHHHHHHTTHHH-HHHHHHHHCC-------------C----
T ss_pred HHHHHHHHCCC----CHHHHHHHHHHHHHHhcc--CCHHHHHHHHHCCCHH-HHHHHHhcCC-------------C----
Confidence 88999988642 578999999999998653 23443333322 122 2333322211 1
Q ss_pred cCHHHHHHHHHHHHHHHHH--HHHHHhcCCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChHHHHHHHHH
Q 000056 2216 WTPAMAASLSAQISTMASD--LYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLD 2293 (2526)
Q Consensus 2216 Wn~~mR~~v~~~i~~~~~~--~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~ 2293 (2526)
.+++......+.+++.. -.+.+ ++ . -.+.+.
T Consensus 185 --~~~~~~A~~aL~nLs~~~~~nk~~-----------------------i~----------~------------~~Gai~ 217 (354)
T 3nmw_A 185 --ESTLKSVLSALWNLSAHCTENKAD-----------------------IC----------A------------VDGALA 217 (354)
T ss_dssp --HHHHHHHHHHHHHHHTTCHHHHHH-----------------------HH----------H------------STTHHH
T ss_pred --HHHHHHHHHHHHHHHccChhhhHH-----------------------HH----------H------------hcCcHH
Confidence 12333333444333320 00000 00 0 013445
Q ss_pred HHHHHHhccCCCCCCCCCchHHHHHHHHHHHHh---cCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCccc
Q 000056 2294 QYLSSIAATHYDTQAIDPELPLLLSAALVSLLR---VHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEAD 2370 (2526)
Q Consensus 2294 ~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~---~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~ 2370 (2526)
.+++.+...+.. . +.++.+-.+.++..|-. ..+.-...+...|-+|.|+.+|.+.+
T Consensus 218 ~Lv~lL~~~~~~-~--~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~------------------ 276 (354)
T 3nmw_A 218 FLVGTLTYRSQT-N--TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS------------------ 276 (354)
T ss_dssp HHHHHTTCCCSS-S--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC------------------
T ss_pred HHHHHhccCCCc-c--cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC------------------
Confidence 555555432211 0 11233434445555544 47777788888999999999987422
Q ss_pred cCcCCCCCCCCCCCChhhhhhhhHHHHHHHhh-CChhHHHHHhhcCCCCCcchHHHHHHhhccCchH--hHHHHHHHHHh
Q 000056 2371 RTYESDDGSAQPVQTPQERVRLSCLRVLHQLA-ASTTCAEAMAATSTGTPQVVPILMKAIGWQGGSI--LALETLKRVVV 2447 (2526)
Q Consensus 2371 ~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls-~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~~--la~etL~r~~~ 2447 (2526)
..+++.|...|..|+ .+..+.+.+.+.++ ||+|++-+......+ .|+.+|..+..
T Consensus 277 -----------------~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~-----i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 277 -----------------LTIVSNACGTLWNLSARNPKDQEALWDMGA-----VSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp -----------------HHHHHHHHHHHHHHTSSCHHHHHHHHHTTH-----HHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred -----------------hHHHHHHHHHHHHHhCCCHHHHHHHHHCCC-----HHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 247789999999999 58999999998776 999999987755443 89999999998
Q ss_pred c
Q 000056 2448 A 2448 (2526)
Q Consensus 2448 ~ 2448 (2526)
.
T Consensus 335 ~ 335 (354)
T 3nmw_A 335 N 335 (354)
T ss_dssp T
T ss_pred C
Confidence 5
No 65
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.92 E-value=0.0065 Score=69.80 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcC-ChhHHHHHHhhcchHHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQM 2104 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaiA~~~~vl~~Ll~l 2104 (2526)
...++.+|.+++..++.....+...+.++.|+.+|... +..++..|+.+|..++. +.++.+.+...+ .+..|+.+
T Consensus 29 ~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g-~i~~L~~l 104 (252)
T 4db8_A 29 QLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQIQAVIDAG-ALPALVQL 104 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-HHHHHHHG
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-CHHHHHHH
Confidence 35678888888876555455566678888999999763 46799999999999986 778888887755 78888888
Q ss_pred Hhh-CcchHHHHHHHHHHhhcchHHH-HHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000056 2105 LHY-APACREGVLHVLYALASTPELA-WAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2526)
Q Consensus 2105 L~~-~p~~~~~vL~~L~aL~s~t~lV-kqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aD 2170 (2526)
|.. .++.+..++.+|..++..++.. ....+.|++..|+++|... ++.+|..++.+|+.+...
T Consensus 105 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASG 168 (252)
T ss_dssp GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS----CHHHHHHHHHHHHHHTTS
T ss_pred HcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHcC
Confidence 875 3456677999999999877766 7888999999999999653 678999999999999864
No 66
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.82 E-value=0.0074 Score=67.49 Aligned_cols=136 Identities=24% Similarity=0.222 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhc-CChhHHHHHHhhcchHHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLT-TCASCLEAMVADGSSLLLLLQM 2104 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls-~n~~CVeaiA~~~~vl~~Ll~l 2104 (2526)
...++.+|.|+...++.....+...+.++.|+.+|... +..++..|..+|..++ .+..+.+.+...+ ++..|+.+
T Consensus 71 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~l 146 (210)
T 4db6_A 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQIQAVIDAG-ALPALVQL 146 (210)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC---cHHHHHHHHHHHHHHHcCCHHHHHHHHHcC-cHHHHHHH
Confidence 45678899999988888877777888999999999763 5679999999998888 5677777777644 78889888
Q ss_pred Hhh-CcchHHHHHHHHHHhhcc-hHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhc
Q 000056 2105 LHY-APACREGVLHVLYALAST-PELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVG 2169 (2526)
Q Consensus 2105 L~~-~p~~~~~vL~~L~aL~s~-t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~a 2169 (2526)
|.. .++.+..++.+|..++.. ++......+.|++..|++++... ++.+|..++.+|+.+..
T Consensus 147 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~----~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 147 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE----NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS----CHHHHHHHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHhc
Confidence 875 345567788999999876 66777778889999999998753 67899999999998864
No 67
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.71 E-value=0.13 Score=67.89 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhhCcc----chhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHH
Q 000056 2026 LQFGLTSLQNILTSNPN----LASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLL 2101 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~----la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~L 2101 (2526)
++-+.-||.||-..+.. ....+...+.++.|..+|... +..++..+...|..|+.....-+.|.+ .+++.|
T Consensus 326 ~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~---~~~v~~~A~~aL~nLs~~~~~~~~I~~--g~ip~L 400 (584)
T 3l6x_A 326 LEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE---HERVVKAASGALRNLAVDARNKELIGK--HAIPNL 400 (584)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHHTTCSCHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHhCChhHHHHHHh--CCHHHH
Confidence 45667788888765422 111223345688888888753 457889999999888866554455532 478888
Q ss_pred HHHHhhC---------cchHHHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000056 2102 LQMLHYA---------PACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2526)
Q Consensus 2102 l~lL~~~---------p~~~~~vL~~L~aL~s-~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aD 2170 (2526)
+.+|... .+....++.+|..++. +++-.+..++.||+..|.+++.+.. ..+.++..|+.+|.-|..+
T Consensus 401 V~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~--~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 401 VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN--RSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS--SCHHHHHHHHHHHHHHHTS
T ss_pred HHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC--CChHHHHHHHHHHHHHHcC
Confidence 8888643 1334558888887764 6778888899999999999997632 3567888899999999875
No 68
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.70 E-value=0.37 Score=59.81 Aligned_cols=147 Identities=16% Similarity=0.097 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhhCccchhhcc-ccCChhhhhcccCCCCCC-CCChhhHHHHHHHHhc----CChhHHHHHHhhcchHHH
Q 000056 2027 QFGLTSLQNILTSNPNLASIFS-TKEKLLPLFECFSVPFAP-DSNIPQLCLNVLSLLT----TCASCLEAMVADGSSLLL 2100 (2526)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~-s~~~L~~Lf~~L~~~~~~-~~~vq~~aL~VL~~ls----~n~~CVeaiA~~~~vl~~ 2100 (2526)
+.++.||.||-..+++....+. ..|.++.|..+|...... ...++..|.-+|..++ .+.+..+.|...+ .+..
T Consensus 189 ~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g-~i~~ 267 (354)
T 3nmw_A 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN-CLQT 267 (354)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT-HHHH
T ss_pred HHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC-CHHH
Confidence 4567788888765655544444 568888899998753211 1147888888888777 4888888887755 7888
Q ss_pred HHHHHhhC-cchHHHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHH
Q 000056 2101 LLQMLHYA-PACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVA 2178 (2526)
Q Consensus 2101 Ll~lL~~~-p~~~~~vL~~L~aL~s-~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~ 2178 (2526)
|+.+|... .+....+.-+|..|+. +++-.+..++.|++..|.+++... ...+|..++.+|..+..+ ...+++
T Consensus 268 Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~----~~~i~~~A~~aL~nL~~~--~~~~~~ 341 (354)
T 3nmw_A 268 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK----HKMIAMGSAAALRNLMAN--RPAKYK 341 (354)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS----SHHHHHHHHHHHHHHHTT--CCGGGC
T ss_pred HHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHcC--CHHHHh
Confidence 99888753 3445668889999984 677888889999999999998653 578899999999999876 444444
Q ss_pred HH
Q 000056 2179 IT 2180 (2526)
Q Consensus 2179 ~~ 2180 (2526)
.+
T Consensus 342 ~~ 343 (354)
T 3nmw_A 342 DA 343 (354)
T ss_dssp --
T ss_pred hh
Confidence 33
No 69
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.32 E-value=0.025 Score=68.53 Aligned_cols=136 Identities=15% Similarity=0.136 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhc-ccCCCCCCCCChhhHHHHHHHHhcCC-hhHHHHHHhhcchHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFE-CFSVPFAPDSNIPQLCLNVLSLLTTC-ASCLEAMVADGSSLLLLLQ 2103 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~-~L~~~~~~~~~vq~~aL~VL~~ls~n-~~CVeaiA~~~~vl~~Ll~ 2103 (2526)
-..++..|.+++.+ .+.+..+...|.+++|+. +|.. +++.++..|..+|..++.+ ..|-+.+...+ .+..|+.
T Consensus 57 k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s---~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g-~l~~Ll~ 131 (296)
T 1xqr_A 57 REGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEA---GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG-ALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTC---SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC-CHHHHHH
Confidence 45678888888774 345555666788999999 8875 3568999999999877654 56777777654 8899999
Q ss_pred HHhhC--cchHHHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000056 2104 MLHYA--PACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2526)
Q Consensus 2104 lL~~~--p~~~~~vL~~L~aL~s-~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aD 2170 (2526)
+|... +..+..++-+|..++. ++...+..+..||+..|+.+|... .+.+|..+|-+|+.++..
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~----d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ----VQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHhC
Confidence 99864 3456678888888875 556666778899999999998652 678999999999998764
No 70
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.30 E-value=0.056 Score=65.47 Aligned_cols=148 Identities=12% Similarity=0.036 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcC-ChhHHHHHHhhcchHHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQM 2104 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaiA~~~~vl~~Ll~l 2104 (2526)
.+.+..+|.|+.+++|.....+...+.+++|..+|... ++..++..|+-.|+.++. +....+.+...+ .+..|+.+
T Consensus 99 r~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~--~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~g-gi~~L~~l 175 (296)
T 1xqr_A 99 RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD--ACDTVRVKALFAISCLVREQEAGLLQFLRLD-GFSVLMRA 175 (296)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC--CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC-CHHHHHHH
Confidence 46789999999999999988888889999999999752 245788999999988875 567777777644 78888888
Q ss_pred HhhC-cchHHHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 000056 2105 LHYA-PACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLA 2182 (2526)
Q Consensus 2105 L~~~-p~~~~~vL~~L~aL~s-~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~ 2182 (2526)
|+.. +.....+.-+|..|+. +++..+..++.|++..|+++|... .+.+|..++..|+.+..+ ++.......
T Consensus 176 L~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~----d~~v~~~al~aL~~l~~~---~~~~~~~~~ 248 (296)
T 1xqr_A 176 MQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE----HSPFHEHVLGALCSLVTD---FPQGVRECR 248 (296)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC----CSTHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC----ChhHHHHHHHHHHHHHhC---ChhHHHHHh
Confidence 8753 3444557777777765 466778888999999999998753 467999999999999886 676655544
Q ss_pred h
Q 000056 2183 R 2183 (2526)
Q Consensus 2183 K 2183 (2526)
+
T Consensus 249 ~ 249 (296)
T 1xqr_A 249 E 249 (296)
T ss_dssp C
T ss_pred c
Confidence 4
No 71
>3k3v_A Protein SMY2; GYF domain, poly-proline binding, domain SWAP, ragnya, phosphoprotein, protein binding; 1.80A {Saccharomyces cerevisiae} PDB: 3fma_A
Probab=94.77 E-value=0.02 Score=58.82 Aligned_cols=51 Identities=18% Similarity=0.312 Sum_probs=45.8
Q ss_pred cceeEeecCCCcccccccHHHHHHHHhcCCcCcCCceecccC-------c-chhhchhh
Q 000056 1171 FKEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGM-------L-DWKKLRDI 1221 (2526)
Q Consensus 1171 ~KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM-------~-~W~~l~~i 1221 (2526)
++.|||.+..|+.+|||+..+|.+.+++|-.+.+-+||+.+- + .|.+++++
T Consensus 15 e~~W~Y~Dp~G~vQGPFs~~~M~~W~~~GYF~~~L~VrR~~~~~~p~g~d~~F~~Lgel 73 (100)
T 3k3v_A 15 ESSWRYIDTQGQIHGPFTTQMMSQWYIGGYFASTLQISRLGSTPETLGINDIFITLGEL 73 (100)
T ss_dssp CCEEEEECTTSCEEEEEEHHHHHHHHHTTCCCTTCEEEECCSSCCSSSCBTCCEEHHHH
T ss_pred cceEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEcCCCCCccCCCCceeeHHHH
Confidence 689999999999999999999999999999999999999753 2 58888776
No 72
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=93.11 E-value=0.41 Score=56.17 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcC-ChhHHHHHHhhcchHHHHHHHH
Q 000056 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQML 2105 (2526)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaiA~~~~vl~~Ll~lL 2105 (2526)
..+..+|.++-..++.....+...|.+++|..+|.. ++..+|..|...|..++. +.++-.+|+..+ .++.|+.+|
T Consensus 28 ~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s---~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~G-aI~~Lv~lL 103 (233)
T 3tt9_A 28 SAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV---QNEDVQRAVCGALRNLVFEDNDNKLEVAELN-GVPRLLQVL 103 (233)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcC-CHHHHHHHH
Confidence 456778888888888777777778899999999976 356899999999999986 788888888765 789999999
Q ss_pred hhC--cchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhc----CC--------CCCCcHHHHHHHHHHHHHHhcCC
Q 000056 2106 HYA--PACREGVLHVLYALASTPELAWAAAKHGGVVYILELLL----PS--------QQETPLQQRAAAASLLGKLVGQP 2171 (2526)
Q Consensus 2106 ~~~--p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~----~s--------~e~~~~~~R~~aA~lL~kM~aDk 2171 (2526)
++. ++....+.-+|+.|++.++. +..+..+|+.-|.+++. .. .......++.-++..|.-|..
T Consensus 104 ~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss-- 180 (233)
T 3tt9_A 104 KQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS-- 180 (233)
T ss_dssp HHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTT--
T ss_pred ccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhc--
Confidence 753 45566677888999876654 33444567888877642 10 112367889999999999976
Q ss_pred CCChHHHHHHHh
Q 000056 2172 MHGPRVAITLAR 2183 (2526)
Q Consensus 2172 lhGPrV~~~L~K 2183 (2526)
.++..|..+..
T Consensus 181 -~~~~~R~~~r~ 191 (233)
T 3tt9_A 181 -AGADGRKAMRR 191 (233)
T ss_dssp -SCHHHHHHHHT
T ss_pred -CCHHHHHHHHH
Confidence 35666665544
No 73
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=92.37 E-value=7.2 Score=52.94 Aligned_cols=318 Identities=14% Similarity=0.124 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHhhCccchhhccccCChhhhhc-ccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHH
Q 000056 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFE-CFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQML 2105 (2526)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~-~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL 2105 (2526)
..+..+|..|+.--|++...+=-.....+++. .+.. .....+...+|+.++..+-++.|=+.|.. .++..|...+
T Consensus 230 ~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~--~~~~~~~~a~L~lLsaACi~~~cR~~I~~--~~~~~L~~~l 305 (778)
T 3opb_A 230 SIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFE--EQDLQFTKELLRLLSSACIDETMRTYITE--NYLQLLERSL 305 (778)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHS--SCCHHHHHHHHHHHHHHCCSHHHHHHHHH--HHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhc--ccchHHHHHHHHHHHHHhCCcHHHHHHHH--hHHHHHHHHh
Confidence 34566666777777776554333333323332 2222 13345779999999999999999777753 4667777777
Q ss_pred hhCcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhC
Q 000056 2106 HYAPACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFL 2185 (2526)
Q Consensus 2106 ~~~p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~KfL 2185 (2526)
.. ...+..++=+|..|.+.++.-..-+.. +.-.+.+.|++. ....|..+++-|+-++-| |.|+..|..=
T Consensus 306 ~~-~~ir~lAavvL~KL~~~~~~~~~si~~-La~~~~~~L~~~----~~~~~~~AvEgLaYLSl~----~~VKe~L~~d- 374 (778)
T 3opb_A 306 NV-EDVQIYSALVLVKTWSFTKLTCINLKQ-LSEIFINAISRR----IVPKVEMSVEALAYLSLK----ASVKIMIRSN- 374 (778)
T ss_dssp TS-GGGHHHHHHHHHHHTGGGTCTTCCHHH-HHHHHHHHTTTC----CHHHHHHHHHHHHHHTTS----SHHHHHHHHC-
T ss_pred cc-HHHHHHHHHHHHHHhcCCCCCcCcHHH-HHHHHHHHHhcC----CccHHHHHHHHHHHHhCC----HHHHHHHHhC-
Confidence 54 455666777777777544321000000 112344455543 223488899999888765 6677766551
Q ss_pred cHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccCCCcEE
Q 000056 2186 PDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQV 2265 (2526)
Q Consensus 2186 P~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~V 2265 (2526)
..|+ ...+.++.+ ++ +...--.+-.++.++ ...+ |. +..|-.
T Consensus 375 -~~~L--------~~Lv~llk~----~~---d~s~~Ygal~IL~NL--------t~~~------~~-------~~~e~~- 416 (778)
T 3opb_A 375 -ESFT--------EILLTMIKS----QK---MTHCLYGLLVIMANL--------STLP------EE-------XXXXXX- 416 (778)
T ss_dssp -HHHH--------HHHHHHHTT----TC---CTTHHHHHHHHHHHT--------TCCC------CC-------CCCCCC-
T ss_pred -HHHH--------HHHHHHHhC----CC---CchHHHHHHHHHHHh--------cCCC------cc-------cchhhh-
Confidence 1111 112233322 00 111111222222222 1111 11 111100
Q ss_pred eeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHH
Q 000056 2266 GGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLV 2345 (2526)
Q Consensus 2266 GGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~lpkl~ 2345 (2526)
+=.||+=|.+... |+ .+.-|. .+...+=+.-++. ..|.-.|-+|.|+
T Consensus 417 ~l~~Lk~~A~~~~-----p~--------------------~~~~d~---~~~~~~~v~~~~~-----~~l~eaGvIp~Lv 463 (778)
T 3opb_A 417 XXXXXXXXXXXXX-----PA--------------------ADKVGA---EKAAKEDILLFNE-----KYILRTELISFLK 463 (778)
T ss_dssp -------------------------------------------CCT---HHHHHHHHHHHHH-----HHTTTTTHHHHHH
T ss_pred hhhhhhhhccccC-----cc--------------------cCcccc---cccchHHHHHHHH-----HHHHHCcCHHHHH
Confidence 2234444433311 11 111111 1122222222111 4566678999999
Q ss_pred HHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHH
Q 000056 2346 AAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPIL 2425 (2526)
Q Consensus 2346 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~s~~Cv~ala~~~~~~~~~v~~l 2425 (2526)
..+.+.+ +.++..++++|+.||.+..|-..+.+-+. +++|
T Consensus 464 ~Ll~S~s-----------------------------------~~~re~A~~aL~nLS~d~~~R~~lvqqGa-----l~~L 503 (778)
T 3opb_A 464 REMHNLS-----------------------------------PNCKQQVVRIIYNITRSKNFIPQLAQQGA-----VKII 503 (778)
T ss_dssp HHGGGSC-----------------------------------HHHHHHHHHHHHHHHTSGGGHHHHHHTTH-----HHHH
T ss_pred HHHcCCC-----------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHCCC-----HHHH
Confidence 8877532 24677999999999999999999999765 8889
Q ss_pred HHHhhccCc-----hHhHHHHHHHHHhcCCccchHHHH--HHHhhCcHHHHHHhcc
Q 000056 2426 MKAIGWQGG-----SILALETLKRVVVAGNRARDALVA--QGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2426 ~~a~~~~~~-----~~la~etL~r~~~~~~r~~~~Lv~--qaL~~~lv~~LL~lLd 2474 (2526)
+........ ...|+.+|.|+....| +.++- |.. .|-||.|++||.
T Consensus 504 L~lL~s~~~~~~~~k~~AA~ALArLlis~n---p~~~f~~~~~-~~aI~pLv~LL~ 555 (778)
T 3opb_A 504 LEYLANKQDIGEPIRILGCRALTRMLIFTN---PGLIFKKYSA-LNAIPFLFELLP 555 (778)
T ss_dssp HHHTTCC---CCHHHHHHHHHHHHHHHTSC---HHHHSSSSCS-TTHHHHHHHTSC
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHhcCC---HHHHcCCCcc-ccchHHHHHHcC
Confidence 988877542 2489999999997542 34431 111 388999999995
No 74
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=91.47 E-value=2 Score=58.56 Aligned_cols=160 Identities=15% Similarity=0.159 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhhCccchhhcc----ccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHh-hcchHHHH
Q 000056 2027 QFGLTSLQNILTSNPNLASIFS----TKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVA-DGSSLLLL 2101 (2526)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~----s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~-~~~vl~~L 2101 (2526)
..++.+|..+.+..|....... -..-++.++.+|.. ++..++..|+..+..+..... +.+.. ...++..+
T Consensus 146 ~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~---~~~~vR~~A~~aL~~~~~~~~--~~~~~~~~~~l~~l 220 (852)
T 4fdd_A 146 EGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH---SSPKIRSHAVACVNQFIISRT--QALMLHIDSFIENL 220 (852)
T ss_dssp HHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTC---SSHHHHHHHHHHHHTTTTTTC--HHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHH
Confidence 4567778888877665422100 01234455666653 356788999998876654322 11111 12355566
Q ss_pred HHHHhh-CcchHHHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHH
Q 000056 2102 LQMLHY-APACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAI 2179 (2526)
Q Consensus 2102 l~lL~~-~p~~~~~vL~~L~aL~s-~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~ 2179 (2526)
+.++.. .++.+..++++|..++. .++.+..-+. +.+.+++.++.+ ..+.+|..+++.+..+...+.....+.-
T Consensus 221 ~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~----~~~~vr~~a~e~l~~l~~~~~~~~~~~~ 295 (852)
T 4fdd_A 221 FALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQD----QDENVALEACEFWLTLAEQPICKDVLVR 295 (852)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTC----SSHHHHHHHHHHHHHHTTSTTHHHHHTT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccC----CcHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 665543 34566778888888775 3333332222 345566776654 3578999999999998776532111222
Q ss_pred HHHhhCcHHHHHHHhcCc
Q 000056 2180 TLARFLPDGLVSVIRDGP 2197 (2526)
Q Consensus 2180 ~L~KfLP~~fvdamrdsP 2197 (2526)
.+.+++| .++..|..+.
T Consensus 296 ~~~~l~p-~ll~~l~~~e 312 (852)
T 4fdd_A 296 HLPKLIP-VLVNGMKYSD 312 (852)
T ss_dssp THHHHHH-HHHHHTSCCH
T ss_pred HHHHHHH-HHHHHcCCcH
Confidence 3444443 3455665543
No 75
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=89.55 E-value=3.9 Score=50.56 Aligned_cols=281 Identities=12% Similarity=0.084 Sum_probs=139.2
Q ss_pred CChhhHHHHHHHHhcCC--hhHHHHHHhhcchHHHHHHHHhhC---cchHHHHHHHHHHhhcchHHHHHHHHc-CCHhhh
Q 000056 2068 SNIPQLCLNVLSLLTTC--ASCLEAMVADGSSLLLLLQMLHYA---PACREGVLHVLYALASTPELAWAAAKH-GGVVYI 2141 (2526)
Q Consensus 2068 ~~vq~~aL~VL~~ls~n--~~CVeaiA~~~~vl~~Ll~lL~~~---p~~~~~vL~~L~aL~s~t~lVkqal~~-GgvlyL 2141 (2526)
..++..++.+|..+... ........ ..++..++.++... ++.+..+++++..+...-+ ..... ....|+
T Consensus 144 ~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~---~~~~~~~~~~~l 218 (462)
T 1ibr_B 144 EHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK---ANFDKESERHFI 218 (462)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH---HHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHH
Confidence 35677888888766531 11111111 13566677777654 4556667787776553211 00000 011234
Q ss_pred HHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHH-hhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHH
Q 000056 2142 LELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLA-RFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAM 2220 (2526)
Q Consensus 2142 L~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~-KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~m 2220 (2526)
+..++.........+|..+++.|..+... ++..+...+. .++|. ++..++|. +++.
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~--~~~~~~~~~~~~l~~~-~~~~~~~~--------------------~~~v 275 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSL--YYQYMETYMGPALFAI-TIEAMKSD--------------------IDEV 275 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHH--CGGGCTTTTTTTHHHH-HHHHHHCS--------------------SHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHcCC--------------------chHH
Confidence 44443222334678999999999998763 2222211111 22221 22222221 3455
Q ss_pred HHHHHHHHHHHHHHHHHHH-hcCCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCCh----HHHHHHHHHHH
Q 000056 2221 AASLSAQISTMASDLYREQ-MKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNP----KRFLEGLLDQY 2295 (2526)
Q Consensus 2221 R~~v~~~i~~~~~~~~~~Q-~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~P----K~FL~~Ll~~~ 2295 (2526)
|....+++.+.+....... ..+. ..++ -.|..|.. +.++..++..+
T Consensus 276 ~~~a~~~l~~~~~~~~~~~~~~~~----~~~~-------------------------~~~~~~~~~~~~~~~~~~l~p~l 326 (462)
T 1ibr_B 276 ALQGIEFWSNVCDEEMDLAIEASE----AAEQ-------------------------GRPPEHTSKFYAKGALQYLVPIL 326 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC----TTCS-------------------------SSCSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc----cccc-------------------------CCCccchhHHHHHHHhhhccHHH
Confidence 6666666666655432111 1110 0000 01111222 23556677777
Q ss_pred HHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCC
Q 000056 2296 LSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYES 2375 (2526)
Q Consensus 2296 ~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2375 (2526)
+..+...+.|...-+...-.-...++-.|...-+ -..+|.++..+...-.
T Consensus 327 ~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--------~~~~~~~~~~l~~~l~---------------------- 376 (462)
T 1ibr_B 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--------DDIVPHVLPFIKEHIK---------------------- 376 (462)
T ss_dssp HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--------TTHHHHHHHHHHHHTT----------------------
T ss_pred HHHHHhcccccccccchHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHhc----------------------
Confidence 7777654322211122222222333333333322 1345666655542110
Q ss_pred CCCCCCCCCChhhhhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhhccCchH--hHHHHHHHHHhc
Q 000056 2376 DDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGSI--LALETLKRVVVA 2448 (2526)
Q Consensus 2376 ~~~~~~~~~~~~~~~~~s~l~vlh~ls~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~~--la~etL~r~~~~ 2448 (2526)
.+..++|.+|+..|..++.+.. .+.+. -.-+.++|.+.+.+..+...+ -||.+|.++...
T Consensus 377 ---------~~~~~~r~aal~~l~~l~~~~~-~~~~~---~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 377 ---------NPDWRYRDAAVMAFGCILEGPE-PSQLK---PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp ---------CSSHHHHHHHHHHHHHTSSSSC-TTTTC---TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCChHHHHHHHHHHHHHhcCCc-HHHHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 0124789999999999997421 01121 123678999999998755433 899999999884
No 76
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=86.05 E-value=2.4 Score=49.73 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=81.8
Q ss_pred ChhhhhcccCCCCCCCC--ChhhHHHHHHHHhc-CChhHHHHHHhhcchHHHHHHHHhhC-cchHHHHHHHHHHhhc-ch
Q 000056 2052 KLLPLFECFSVPFAPDS--NIPQLCLNVLSLLT-TCASCLEAMVADGSSLLLLLQMLHYA-PACREGVLHVLYALAS-TP 2126 (2526)
Q Consensus 2052 ~L~~Lf~~L~~~~~~~~--~vq~~aL~VL~~ls-~n~~CVeaiA~~~~vl~~Ll~lL~~~-p~~~~~vL~~L~aL~s-~t 2126 (2526)
.++.+.++|... ++ .++..+...|..++ .+..--..|...+ .++.|+.+|.+. ++....+..+|..|+. ++
T Consensus 9 ~i~~lV~lL~s~---~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G-~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 9 TLERAVSMLEAD---HMLPSRISAAATFIQHECFQKSEARKRVNQLR-GILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CHHHHHHTCCSS---CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTT-HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHhCCC---CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 356677777653 33 67777878888777 4555555666655 679999999753 4556678888899987 45
Q ss_pred HHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000056 2127 ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2526)
Q Consensus 2127 ~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aD 2170 (2526)
+--....+.||+..|+++|..+ ....++..++.+|-.|...
T Consensus 85 ~nk~~I~~~GaI~~Lv~lL~~~---~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 85 DNKLEVAELNGVPRLLQVLKQT---RDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCHHHHHHHHccC---CCHHHHHHHHHHHHHHHcC
Confidence 6666678899999999999742 2567899999999888754
No 77
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=85.87 E-value=61 Score=43.45 Aligned_cols=248 Identities=14% Similarity=0.129 Sum_probs=145.0
Q ss_pred cchHHHHHHHHh-hCcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHh-hcCCCCCCcHHHHHHHHHHHHHHhcCCC
Q 000056 2095 GSSLLLLLQMLH-YAPACREGVLHVLYALASTPELAWAAAKHGGVVYILEL-LLPSQQETPLQQRAAAASLLGKLVGQPM 2172 (2526)
Q Consensus 2095 ~~vl~~Ll~lL~-~~p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~L-L~~s~e~~~~~~R~~aA~lL~kM~aDkl 2172 (2526)
+.+++ ++..|. ..++.+..++..|..|+.++...+..+..|+|.-+|.- |.+ .+.++|++|+.+|+-+..+
T Consensus 34 ~~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D----~~~~Vr~~A~gaLrnL~~~-- 106 (684)
T 4gmo_A 34 DKILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD----NNIDSRAAGWEILKVLAQE-- 106 (684)
T ss_dssp HTTHH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC----SCHHHHHHHHHHHHHHHHH--
T ss_pred hhHHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC----CCHHHHHHHHHHHHHHHhh--
Confidence 33545 445565 35677888999999999999999999999999988874 554 3688999999999999876
Q ss_pred CChHHHHHHHh--hCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCC
Q 000056 2173 HGPRVAITLAR--FLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVP 2250 (2526)
Q Consensus 2173 hGPrV~~~L~K--fLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lP 2250 (2526)
-|+.+...+-+ .+|+ .+++| .+.... ... |..+
T Consensus 107 ~g~d~~~~l~~~~il~~-------------L~~~l-----------------------~~~~~~----~~~-----~~~~ 141 (684)
T 4gmo_A 107 EEADFCVHLYRLDVLTA-------------IEHAA-----------------------KAVLET----LTT-----SEPP 141 (684)
T ss_dssp SCHHHHHHHHHTTHHHH-------------HHHHH-----------------------HHHHHH----HHC-----BTTB
T ss_pred cCchHHHHHHHcChHHH-------------HHHHH-----------------------HhhHHH----Hhh-----hccc
Confidence 46666554432 1111 11111 111111 100 1100
Q ss_pred cccccccccCCCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCch
Q 000056 2251 EQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPA 2330 (2526)
Q Consensus 2251 e~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~ 2330 (2526)
.... .. .=++.+.++.+. +-+++.+|......
T Consensus 142 ~~~~-----~~---------------------~~~~~~~~~~~~----------------------~l~lL~~L~e~s~~ 173 (684)
T 4gmo_A 142 FSKL-----LK---------------------AQQRLVWDITGS----------------------LLVLIGLLALARDE 173 (684)
T ss_dssp GGGS-----CH---------------------HHHHHHHHHHHH----------------------HHHHHHHHHHHCHH
T ss_pred cccc-----cH---------------------HHHHHHHHHHHH----------------------HHHHHHHHHhCCHH
Confidence 0000 00 001111111111 22344455555556
Q ss_pred hhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCCCCCCCChhhhhhhhHHHHHHHhhC-ChhHHH
Q 000056 2331 LADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAE 2409 (2526)
Q Consensus 2331 LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~-s~~Cv~ 2409 (2526)
..+.|...|.+|.|+..|...+. .+ ..+..+++.+|..|+. |..-++
T Consensus 174 ~~~~v~~~~~l~~l~~~L~~~~~-------------------------------~~-~~v~~~a~~~L~~ls~dn~~~~~ 221 (684)
T 4gmo_A 174 IHEAVATKQTILRLLFRLISADI-------------------------------AP-QDIYEEAISCLTTLSEDNLKVGQ 221 (684)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHCC-------------------------------SC-HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHhcCC-------------------------------Cc-HHHHHHHHHHHHHHhccCHHHHH
Confidence 66777778999999999875431 11 3588899999999987 566777
Q ss_pred HHhhcCCCCCcchHHHHHHhhccC-chHhHHHHHHHHHhcCC-ccchHHHHHHHhhCcHHHHHHhcccc
Q 000056 2410 AMAATSTGTPQVVPILMKAIGWQG-GSILALETLKRVVVAGN-RARDALVAQGLKVGLVDVLLGLLDWR 2476 (2526)
Q Consensus 2410 ala~~~~~~~~~v~~l~~a~~~~~-~~~la~etL~r~~~~~~-r~~~~Lv~qaL~~~lv~~LL~lLd~~ 2476 (2526)
++... +...++..++....... ..+++|-.|..+|.... -........++..-+++.+-..++..
T Consensus 222 ~i~~~--~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~~~~~~d~s~~~~~~~~~~li~~l~~~l~~~ 288 (684)
T 4gmo_A 222 AITDD--QETHVYDVLLKLATGTDPRAVMACGVLHNVFTSLQWMDHSPGKDGACDAILIPTLTRALEHV 288 (684)
T ss_dssp HHHTC--CSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHHHHTCBTTBCCGGGCSGGGTHHHHHHHHTTC
T ss_pred HHHhc--chHHHHHHHHHHhcCCcHHHHHHHHHHHhHhhhhhhhhcchhhHHHHHHHHHHhhhhhHhhh
Confidence 88763 33444555555444333 33699999999886411 00111223344555777777777543
No 78
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=85.18 E-value=10 Score=50.45 Aligned_cols=198 Identities=15% Similarity=0.163 Sum_probs=147.4
Q ss_pred HHHHHHHHHHhcHHH--HHHhhccchhHHHHHHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhhhhcccch
Q 000056 501 GFVACLRRLLTSRTA--ASHVMSFPAAVGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHATMMHTKS 578 (2526)
Q Consensus 501 ~~~~aLrRL~as~~g--f~~~~~~p~~~~~v~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~~~~~nKs 578 (2526)
..+|+|+.|+..|.. =.++...|..+.++|.+|.-.+|-|-.+|+.+|+.|..+ + .+-.
T Consensus 141 ~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~---n----------------~~iQ 201 (651)
T 3grl_A 141 PGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS---N----------------GAIQ 201 (651)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT---C----------------HHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC---C----------------HHHH
Confidence 468999999999987 557777999999999999999999999999999999862 1 1222
Q ss_pred hcccchhhHHHHHHhhcCCCC--hhHHHHHHHHHHhhhccCCCCCCCChHHHHHHHHHHHhhhhHHHHhhCCC-------
Q 000056 579 VLFSQQGYLIVLVNRLRPMSV--SPLLSMAVVEVLETMICEPHSETTQYTVFVELLRQVAGLRRRLFALFGHP------- 649 (2526)
Q Consensus 579 ~ll~~~~~~~~L~~~l~~~~~--~aLv~~a~l~~l~~~lC~P~seTT~~~~f~~ll~~va~~gr~lf~Lf~hp------- 649 (2526)
-++.-++-++.|++.++.-|. |+.|+.=+|.++.-.+.. .+.....|-+. +.-..|-.||..+
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~---N~sNQ~~FrEt-----~~i~~L~~LL~~~~~~~~W~ 273 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN---NNSNQNFFKEG-----SYIQRMKPWFEVGDENSGWS 273 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT---CHHHHHHHHHT-----TCGGGGGGGGCCCSCSSCCC
T ss_pred HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc---CHHHHHHHHHc-----CCHHHHHHHhCCCccccccH
Confidence 456667778999999997444 899999999999999843 33345555542 2233444555533
Q ss_pred --hhhHHhHHHHHHHHHHhhcH-HHHHHHHHHHHhhcHHHHHHHHHhcCCC--CchhHHHHHHHHHHhcCChhHHhhhhh
Q 000056 650 --AESVRETVAVIMRTIAEEDA-IAAESMRDAALRDGALLRHLLHAFFLPA--GERREVSRQLVALWADSYQPALDLLSR 724 (2526)
Q Consensus 650 --~~~i~~~aglimrai~Ee~~-~~a~~mq~~AL~eGall~HL~~Alf~~~--~~~r~lsr~LV~lW~~~~~~a~~LL~R 724 (2526)
..+-+.++=.|+|.+...+. ....+.=+.|+.++.++.+|..=+|.+. .+-+--+-..+|-=+.+|+..++.+..
T Consensus 274 ~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~ 353 (651)
T 3grl_A 274 AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFAS 353 (651)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhh
Confidence 22445567788999888854 4456666778889999999999888764 334666677777788899988888876
Q ss_pred c
Q 000056 725 V 725 (2526)
Q Consensus 725 i 725 (2526)
+
T Consensus 354 ~ 354 (651)
T 3grl_A 354 V 354 (651)
T ss_dssp C
T ss_pred c
Confidence 5
No 79
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=82.64 E-value=2.3 Score=57.52 Aligned_cols=139 Identities=17% Similarity=0.158 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhc-CChhHHHHHHh--hcchHHHHHH
Q 000056 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLT-TCASCLEAMVA--DGSSLLLLLQ 2103 (2526)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls-~n~~CVeaiA~--~~~vl~~Ll~ 2103 (2526)
+.+.++|.|+ ..++....++...|.+..|..+|..........+..|...|..++ ..++-+ .+.. ...++..|+.
T Consensus 475 e~A~~aL~nL-S~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~-~f~~~~~~~aI~pLv~ 552 (778)
T 3opb_A 475 QQVVRIIYNI-TRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL-IFKKYSALNAIPFLFE 552 (778)
T ss_dssp HHHHHHHHHH-HTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH-HSSSSCSTTHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH-HcCCCccccchHHHHH
Confidence 5667888887 566888889999999999999997642111236788999997665 222222 2221 1257888999
Q ss_pred HHhhCcch---------------HHHHHHHHHHhhcch-----HHHHHHHHc-CCHhhhHHhhcCCCCCCcHHHHHHHHH
Q 000056 2104 MLHYAPAC---------------REGVLHVLYALASTP-----ELAWAAAKH-GGVVYILELLLPSQQETPLQQRAAAAS 2162 (2526)
Q Consensus 2104 lL~~~p~~---------------~~~vL~~L~aL~s~t-----~lVkqal~~-GgvlyLL~LL~~s~e~~~~~~R~~aA~ 2162 (2526)
+|+..|+. .-.+|-.|..|++.+ ++-+..+.. |++..|.+++... +..+|..|++
T Consensus 553 LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~----n~~VrrAA~e 628 (778)
T 3opb_A 553 LLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE----NVPLQRSTLE 628 (778)
T ss_dssp TSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS----SHHHHHHHHH
T ss_pred HcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC----CHHHHHHHHH
Confidence 98733332 224677777788765 344556774 8899999987642 6789999999
Q ss_pred HHHHHhcCC
Q 000056 2163 LLGKLVGQP 2171 (2526)
Q Consensus 2163 lL~kM~aDk 2171 (2526)
++..|+.++
T Consensus 629 lI~NL~~~~ 637 (778)
T 3opb_A 629 LISNMMSHP 637 (778)
T ss_dssp HHHHHHTSG
T ss_pred HHHHHhCCc
Confidence 999998854
No 80
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=79.70 E-value=88 Score=41.99 Aligned_cols=128 Identities=11% Similarity=0.095 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhCccchhhccccCChh-hhhcccCC-CCCCCCChhhHHHHHHHHhcCChhHHHH---------------
Q 000056 2028 FGLTSLQNILTSNPNLASIFSTKEKLL-PLFECFSV-PFAPDSNIPQLCLNVLSLLTTCASCLEA--------------- 2090 (2526)
Q Consensus 2028 maL~AL~nLL~~nP~la~~~~s~~~L~-~Lf~~L~~-~~~~~~~vq~~aL~VL~~ls~n~~CVea--------------- 2090 (2526)
.+++.|..+....|..-. .++. .++..+.. -...+..+...|++.+..+.........
T Consensus 243 ~a~~~l~~l~~~~~~~~~-----~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (861)
T 2bpt_A 243 AAFGCLCKIMSKYYTFMK-----PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNF 317 (861)
T ss_dssp HHHHHHHHHHHHHGGGCH-----HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHH
Confidence 456677777776664211 0122 23332211 1123457888999988877654322110
Q ss_pred HHh-hcchHHHHHHHHhhC--------cchHHHHHHHHHHhhcch--HHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHH
Q 000056 2091 MVA-DGSSLLLLLQMLHYA--------PACREGVLHVLYALASTP--ELAWAAAKHGGVVYILELLLPSQQETPLQQRAA 2159 (2526)
Q Consensus 2091 iA~-~~~vl~~Ll~lL~~~--------p~~~~~vL~~L~aL~s~t--~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~ 2159 (2526)
+.. ...+++.++..|... +..+..+.++|..++..- .++. ..+.++...|.+ .+...|..
T Consensus 318 ~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~-----~l~~~l~~~l~~----~~~~~r~~ 388 (861)
T 2bpt_A 318 ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE-----PVLEFVEQNITA----DNWRNREA 388 (861)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH-----HHHHHHHHHTTC----SSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHH-----HHHHHHHHHcCC----CChhHHHH
Confidence 000 123566666666532 234445666666555321 1111 122244444432 35789999
Q ss_pred HHHHHHHHhc
Q 000056 2160 AASLLGKLVG 2169 (2526)
Q Consensus 2160 aA~lL~kM~a 2169 (2526)
++..|+.+..
T Consensus 389 a~~~l~~i~~ 398 (861)
T 2bpt_A 389 AVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHTSS
T ss_pred HHHHHHHHHc
Confidence 9999999974
No 81
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=75.02 E-value=15 Score=42.14 Aligned_cols=169 Identities=16% Similarity=0.209 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCC--CCCCChhhHHHHHHHHhcCChhHHHHHHh-hcchHHHHHH
Q 000056 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPF--APDSNIPQLCLNVLSLLTTCASCLEAMVA-DGSSLLLLLQ 2103 (2526)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~--~~~~~vq~~aL~VL~~ls~n~~CVeaiA~-~~~vl~~Ll~ 2103 (2526)
.+++.+|..++..+|.+.. ..+..++..|.... ..+..+...++.++..++..- -..+.. ...+++.++.
T Consensus 33 ~~a~~~L~~l~~~~~~~~~-----~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l--~~~~~~~~~~ilp~ll~ 105 (242)
T 2qk2_A 33 KESLEVLEKLLTDHPKLEN-----GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL--AKRFSNYASACVPSLLE 105 (242)
T ss_dssp HHHHHHHHHHHHHCSSBCC-----CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCC-----CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHH
Confidence 5678899999998776432 11233444432111 245668889999888777211 011111 1235666777
Q ss_pred HHhhC-cchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChH--HHHH
Q 000056 2104 MLHYA-PACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPR--VAIT 2180 (2526)
Q Consensus 2104 lL~~~-p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPr--V~~~ 2180 (2526)
.+... +..+..+..+|.+++....+ .+ .+..++..|.+ .++++|..++..|+.+... +||. ....
T Consensus 106 ~l~d~~~~vr~~a~~aL~~~~~~~~~-~~-----ll~~l~~~l~~----~~~~vr~~~l~~l~~~l~~--~~~~~~~~~~ 173 (242)
T 2qk2_A 106 KFKEKKPNVVTALREAIDAIYASTSL-EA-----QQESIVESLSN----KNPSVKSETALFIARALTR--TQPTALNKKL 173 (242)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTTSCH-HH-----HHHHHHHHTTC----SCHHHHHHHHHHHHHHHTT--CCGGGCCHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHcCCH-HH-----HHHHHHHHHcC----CChHHHHHHHHHHHHHHHH--cCCCCccHHH
Confidence 66543 34456666777666653221 11 12223444432 3789999999999998765 5665 2344
Q ss_pred HHhhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHH
Q 000056 2181 LARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDL 2235 (2526)
Q Consensus 2181 L~KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~ 2235 (2526)
+..++|. ++..+.|. +.+.|.....++..++..+
T Consensus 174 l~~l~p~-l~~~l~D~--------------------~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 174 LKLLTTS-LVKTLNEP--------------------DPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHH-HHHHHTSS--------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhcCC--------------------ChHHHHHHHHHHHHHHHHc
Confidence 5555543 34444333 2245666666666665544
No 82
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=74.54 E-value=38 Score=43.13 Aligned_cols=129 Identities=13% Similarity=0.012 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHh
Q 000056 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLH 2106 (2526)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~ 2106 (2526)
..+.++|..+....+.-. .. ..-++.+..++.. +++.++..|++.|..+...-.- +.+ ...+++.+..++.
T Consensus 182 ~~a~~~l~~l~~~~~~~~-~~--~~l~~~l~~~~~d---~~~~vr~~a~~~l~~l~~~~~~-~~~--~~~~~~~l~~~~~ 252 (588)
T 1b3u_A 182 RAAASKLGEFAKVLELDN-VK--SEIIPMFSNLASD---EQDSVRLLAVEACVNIAQLLPQ-EDL--EALVMPTLRQAAE 252 (588)
T ss_dssp HHHHHHHHHHHHTSCHHH-HH--HTHHHHHHHHHTC---SCHHHHTTHHHHHHHHHHHSCH-HHH--HHHTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcHHh-HH--HHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHhCCH-HHH--HHHHHHHHHHHcc
Confidence 345677777666544311 00 1112233444432 3457888888888766532111 011 1235555655554
Q ss_pred h-CcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000056 2107 Y-APACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2526)
Q Consensus 2107 ~-~p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aD 2170 (2526)
. .+..+..+.+.|..++... -.+......+.+++.++.+ ..+.+|..++..|+++...
T Consensus 253 d~~~~vR~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 253 DKSWRVRYMVADKFTELQKAV--GPEITKTDLVPAFQNLMKD----CEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp CSSHHHHHHHHHTHHHHHHHH--CHHHHHHTHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CcccchhHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHHH
Confidence 3 2334566666666665321 0111223345566666643 3678999999999998764
No 83
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=74.44 E-value=2e+02 Score=38.63 Aligned_cols=304 Identities=13% Similarity=0.121 Sum_probs=146.1
Q ss_pred CChhhHHHHHHHHhcCC--hhHHHHHHhhcchHHHHHHHHhhC---cchHHHHHHHHHHhhcc-h-HHHHHHHHcCCHhh
Q 000056 2068 SNIPQLCLNVLSLLTTC--ASCLEAMVADGSSLLLLLQMLHYA---PACREGVLHVLYALAST-P-ELAWAAAKHGGVVY 2140 (2526)
Q Consensus 2068 ~~vq~~aL~VL~~ls~n--~~CVeaiA~~~~vl~~Ll~lL~~~---p~~~~~vL~~L~aL~s~-t-~lVkqal~~Ggvly 2140 (2526)
..++..+++++..+... .+-+... ...++..++..+... ++.+..++++|..++.. . .+..+... .+
T Consensus 144 ~~~r~~al~~l~~l~~~~~~~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~----~~ 217 (876)
T 1qgr_A 144 EHMKESTLEAIGYICQDIDPEQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER----HF 217 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHGGG--HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH----HH
T ss_pred HHHHHHHHHHHHHHHHhcCHhhHHhH--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HH
Confidence 45677888888766532 1111111 123556666677543 34566788888776642 1 11111111 13
Q ss_pred hHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHH-hhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHH
Q 000056 2141 ILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLA-RFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPA 2219 (2526)
Q Consensus 2141 LL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~-KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIWn~~ 2219 (2526)
++..++...+.....+|..+++.|..+... +++.+.-.+. .++|.. +..+.+ + +++
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~l~~~~-~~~~~~--------------~------~~~ 274 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSL--YYQYMETYMGPALFAIT-IEAMKS--------------D------IDE 274 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--SGGGCHHHHTTTHHHHH-HHHHTC--------------S------SHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHH-HHHhcC--------------C------chH
Confidence 444333211233578999999999998863 3333322222 222211 111211 1 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHH
Q 000056 2220 MAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSI 2299 (2526)
Q Consensus 2220 mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~ 2299 (2526)
.|....+++.+++......+..+ . +.. .+ ..+.. .|.+ ...|.++..++..++..+
T Consensus 275 v~~~al~~l~~l~~~~~~~~~~~-----~---~~~--~~-~~~~~-----------~~~~--~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 275 VALQGIEFWSNVCDEEMDLAIEA-----S---EAA--EQ-GRPPE-----------HTSK--FYAKGALQYLVPILTQTL 330 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----H---HHH--HH-SSCCS-----------SCCC--CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHhhhh-----c---ccc--cc-CCCcc-----------chhH--HHHHHHHHHHhHHHHHHh
Confidence 66666666666665432211100 0 000 00 00000 0111 123345566777777777
Q ss_pred hccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCCCCCC
Q 000056 2300 AATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGS 2379 (2526)
Q Consensus 2300 ~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2379 (2526)
.....+.+.-+...-.-...++..|...-+ + ..++.++..+...-.
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~-----~~~~~~l~~l~~~l~-------------------------- 376 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCE---D-----DIVPHVLPFIKEHIK-------------------------- 376 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHG---G-----GGHHHHHHHHHHHTT--------------------------
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCc---H-----hhHHHHHHHHHHHcc--------------------------
Confidence 654321111112222222333333333222 2 236667766543110
Q ss_pred CCCCCChhhhhhhhHHHHHHHhhCChh--HHHHHhhcCCCCCcchHHHHHHhhccCch--HhHHHHHHHHHhcCCcc--c
Q 000056 2380 AQPVQTPQERVRLSCLRVLHQLAASTT--CAEAMAATSTGTPQVVPILMKAIGWQGGS--ILALETLKRVVVAGNRA--R 2453 (2526)
Q Consensus 2380 ~~~~~~~~~~~~~s~l~vlh~ls~s~~--Cv~ala~~~~~~~~~v~~l~~a~~~~~~~--~la~etL~r~~~~~~r~--~ 2453 (2526)
.+..++|.+++..|.+++.+.. -....- +.++|.+.++++..... ..||.+|.++....... .
T Consensus 377 -----~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~------~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 445 (876)
T 1qgr_A 377 -----NPDWRYRDAAVMAFGCILEGPEPSQLKPLV------IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN 445 (876)
T ss_dssp -----CSSHHHHHHHHHHHHHTSSSSCHHHHHHHH------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred -----CCChHHHHHHHHHHHHHHcCCCHHHHHHHH------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhccc
Confidence 0114789999999999987532 121111 24588899998765433 38999999988752110 0
Q ss_pred hHHHHHHHhhCcHHHHHHhcc
Q 000056 2454 DALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2454 ~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
.+.+. .+++.|+..|+
T Consensus 446 ~~~l~-----~~l~~l~~~l~ 461 (876)
T 1qgr_A 446 DVYLA-----PLLQCLIEGLS 461 (876)
T ss_dssp TTTHH-----HHHHHHHHHTT
T ss_pred HHHHH-----HHHHHHHHHHc
Confidence 11222 45667777773
No 84
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=74.40 E-value=63 Score=43.97 Aligned_cols=220 Identities=15% Similarity=0.170 Sum_probs=117.2
Q ss_pred CCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhcccCcCcccc
Q 000056 2136 GGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPELV 2215 (2526)
Q Consensus 2136 GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~KfLP~~fvdamrdsP~~a~v~~fds~~EnPELI 2215 (2526)
|...||+.++... .+.++.+|..|+-+|++.....- . -+|+.--..+|+. ++..+. +.
T Consensus 45 ~~~~~l~~il~~~-~~~~~~vR~~a~~~Lkn~i~~~w--~--------~~~~~~~~~ik~~----ll~~l~---~~---- 102 (852)
T 4fdd_A 45 DFNNYLIFVLTKL-KSEDEPTRSLSGLILKNNVKAHF--Q--------NFPNGVTDFIKSE----CLNNIG---DS---- 102 (852)
T ss_dssp HHHHHHHHHHHTC-TTSCHHHHHHHHHHHHHHTTTSG--G--------GCCHHHHHHHHHH----HHTTTT---CS----
T ss_pred CHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHHHcc--C--------CCCHHHHHHHHHH----HHHHHc---CC----
Confidence 4456888888742 23478999999999998876421 1 1566555555543 334442 11
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHH
Q 000056 2216 WTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQY 2295 (2526)
Q Consensus 2216 Wn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~ 2295 (2526)
+...|..+...|..++..- +.-.| | +|+..+
T Consensus 103 -~~~vr~~~a~~i~~ia~~~-------~~~~w--p---------------------------------------~ll~~L 133 (852)
T 4fdd_A 103 -SPLIRATVGILITTIASKG-------ELQNW--P---------------------------------------DLLPKL 133 (852)
T ss_dssp -SHHHHHHHHHHHHHHHHHT-------TTTTC--T---------------------------------------THHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhc-------Ccccc--H---------------------------------------HHHHHH
Confidence 2457888888888776641 11123 1 144444
Q ss_pred HHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCcCC
Q 000056 2296 LSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYES 2375 (2526)
Q Consensus 2296 ~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2375 (2526)
++.+... |....+....++-.++...|...+.-....++..++..+-.-- .
T Consensus 134 ~~~l~~~-------~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-----~----------------- 184 (852)
T 4fdd_A 134 CSLLDSE-------DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-----K----------------- 184 (852)
T ss_dssp HHHHSCS-------SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-----T-----------------
T ss_pred HHHHcCC-------CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-----c-----------------
Confidence 4444432 1122233344445555554444332122334444444433210 0
Q ss_pred CCCCCCCCCChhhhhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhhccCch--HhHHHHHHHHHhcCCccc
Q 000056 2376 DDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGS--ILALETLKRVVVAGNRAR 2453 (2526)
Q Consensus 2376 ~~~~~~~~~~~~~~~~~s~l~vlh~ls~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~--~la~etL~r~~~~~~r~~ 2453 (2526)
.+.+.||..|+..|..+..... +.+... -+.+++.+.+........ ..||++|.++.+..
T Consensus 185 ---------~~~~~vR~~A~~aL~~~~~~~~--~~~~~~---~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~---- 246 (852)
T 4fdd_A 185 ---------HSSPKIRSHAVACVNQFIISRT--QALMLH---IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR---- 246 (852)
T ss_dssp ---------CSSHHHHHHHHHHHHTTTTTTC--HHHHTS---HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC----
T ss_pred ---------CCCHHHHHHHHHHHHHHHhccc--HHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC----
Confidence 0114688999999887664321 222110 123577777766554332 38999999988742
Q ss_pred hHHHHHHHhhCcHHHHHHhcc
Q 000056 2454 DALVAQGLKVGLVDVLLGLLD 2474 (2526)
Q Consensus 2454 ~~Lv~qaL~~~lv~~LL~lLd 2474 (2526)
+..+..-++ ++++++++++.
T Consensus 247 ~~~~~~~l~-~l~~~l~~~~~ 266 (852)
T 4fdd_A 247 MDRLLPHMH-NIVEYMLQRTQ 266 (852)
T ss_dssp HHHHGGGHH-HHHHHHHHHHT
T ss_pred HHHHHHHHH-HHHHHHHHHcc
Confidence 333333333 47777777763
No 85
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=72.67 E-value=1.3e+02 Score=40.36 Aligned_cols=134 Identities=10% Similarity=0.042 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhC-ccc-hhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhh---cchHHHH
Q 000056 2027 QFGLTSLQNILTSN-PNL-ASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVAD---GSSLLLL 2101 (2526)
Q Consensus 2027 ~maL~AL~nLL~~n-P~l-a~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~---~~vl~~L 2101 (2526)
..++++|..+.... |+. ..+.+ .-+..+..++.... ++..++..+++++..+...-. ..+... ..++..+
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~--~ll~~l~~~l~~~~-~~~~vr~~a~~~l~~~~~~~~--~~~~~~~~~~~il~~l 222 (876)
T 1qgr_A 148 ESTLEAIGYICQDIDPEQLQDKSN--EILTAIIQGMRKEE-PSNNVKLAATNALLNSLEFTK--ANFDKESERHFIMQVV 222 (876)
T ss_dssp HHHHHHHHHHHHHSCHHHHGGGHH--HHHHHHHHHHSTTC-SCHHHHHHHHHHHHHHGGGCH--HHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHhhHHhHHH--HHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHH
Confidence 44567777777653 221 11111 11222334444321 135688899999876653211 011110 1134444
Q ss_pred HHHHhh-CcchHHHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhc
Q 000056 2102 LQMLHY-APACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVG 2169 (2526)
Q Consensus 2102 l~lL~~-~p~~~~~vL~~L~aL~s-~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~a 2169 (2526)
..++.. .++.+..++++|..++. .++.+...+....+.+++..+.+ ....+|..+.+.+..+..
T Consensus 223 ~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~v~~~al~~l~~l~~ 288 (876)
T 1qgr_A 223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS----DIDEVALQGIEFWSNVCD 288 (876)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC----SSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHH
Confidence 444432 23445667888877774 33333333443455566665543 357889999888877754
No 86
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=70.98 E-value=45 Score=42.48 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=33.6
Q ss_pred hhhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhhccCch--HhHHHHHHHHHhc
Q 000056 2388 ERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGS--ILALETLKRVVVA 2448 (2526)
Q Consensus 2388 ~~~~~s~l~vlh~ls~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~--~la~etL~r~~~~ 2448 (2526)
..||..+...|..++..-- -+.+ .+.++|.+++.++..... ..|+++|.++...
T Consensus 256 ~~vR~~a~~~l~~l~~~~~-~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 256 WRVRYMVADKFTELQKAVG-PEIT------KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp HHHHHHHHHTHHHHHHHHC-HHHH------HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhC-cccc------hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 3688899998888764210 0111 123588888888764332 2677888877764
No 87
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=69.94 E-value=7.3 Score=44.08 Aligned_cols=81 Identities=14% Similarity=0.265 Sum_probs=58.2
Q ss_pred EEEEEeecccc---cceEEEEeecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceee
Q 000056 24 RYLVVKHSWRG---RYKRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKF 100 (2526)
Q Consensus 24 ~y~vtKhSWrg---kYkRif~Ig~~~i~T~nP~tlevTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~K~~~mkF 100 (2526)
.|+..|..-+| .-..++.|+..||..|||.|-+++..|+| ++|..+... .+.|+|.+... +..++.|
T Consensus 117 ~~f~v~~~~~g~~~~~~~~Lgi~~~Gi~~~~~~~~~~l~~~~~-~~I~~~~~~------~~~f~i~~~~~---~~~~~~~ 186 (206)
T 1mix_A 117 SFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSL-TNIKRWAAS------PKSFTLDFGDY---QDGYYSV 186 (206)
T ss_dssp EEEEEEECCSSCSSCEEEEEEECSSEEEEEETTTCCEEEEEEG-GGCCEEEEC------SSEEEEECGGG---SSSCEEE
T ss_pred eEEEEEEccCCCCCcCcEEEEEcccceEEeCCCCCceeeeeeh-hHeeecccC------CCEEEEEeCcc---cceEEEE
Confidence 45555543333 35789999999999999999999999999 799887762 35799887643 2235778
Q ss_pred echhhhHHHHHHHHh
Q 000056 101 SSRFRASILTELHRI 115 (2526)
Q Consensus 101 ss~~Ra~lLT~l~r~ 115 (2526)
.|.. +..+++|...
T Consensus 187 ~t~~-~~~i~~Li~~ 200 (206)
T 1mix_A 187 QTTE-GEQIAQLIAG 200 (206)
T ss_dssp ECSC-HHHHHHHHHT
T ss_pred ECCc-HHHHHHHHHH
Confidence 7754 5666666653
No 88
>1syx_B CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2, CD; GYF-domain, thioredoxin-like, spliceosomal proteins, transla immune system complex; 2.35A {Homo sapiens} SCOP: d.76.1.1 PDB: 1gyf_A 1l2z_A
Probab=66.54 E-value=5 Score=40.38 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=43.9
Q ss_pred cceeEee---cCCCcccccccHHHHHHHHhcCCcCcCCceecccC--cchhhchhh
Q 000056 1171 FKEWMFI---DKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGM--LDWKKLRDI 1221 (2526)
Q Consensus 1171 ~KeWyY~---~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM--~~W~~l~~i 1221 (2526)
.+.|.|- +.+|+-+||||-.+|+...++|-.+..-.|++.|. ..|.++..|
T Consensus 25 ~~~WeYKW~~~~~~~i~GPfs~~eM~~W~~~GYF~~~v~vRrvg~~~~~Fy~~~rI 80 (86)
T 1syx_B 25 DVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRI 80 (86)
T ss_dssp CCEEEEESSSSSSSCCEEEEEHHHHHHHHHTTSCTTCCEEEESSSTTCCCEEGGGC
T ss_pred cceEEEEecCCCCCcccCCcCHHHHHHHHHCCCcCCCeEEEEecCCCCceEEeeee
Confidence 4889998 66688999999999999999999999999999883 468887665
No 89
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=62.12 E-value=65 Score=43.01 Aligned_cols=158 Identities=19% Similarity=0.219 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCC-CCCC-----hhhHHHHHHHHhcCC-------hhHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFA-PDSN-----IPQLCLNVLSLLTTC-------ASCLEAMV 2092 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~-~~~~-----vq~~aL~VL~~ls~n-------~~CVeaiA 2092 (2526)
++=++..+.||++.||..-..+-..+.+++|..+|..... .... ....+|+++..+... ..|-.++.
T Consensus 229 v~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~ 308 (651)
T 3grl_A 229 VEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMF 308 (651)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 4556889999999999877777777777788877765321 0111 123488888777643 45777788
Q ss_pred hhcchHHHHHHHHhhC--cc-hHHHHHHHHHHhhcchHHHHHHHHc---------CCHhhhHHhhcCCCCCCcHHHHHHH
Q 000056 2093 ADGSSLLLLLQMLHYA--PA-CREGVLHVLYALASTPELAWAAAKH---------GGVVYILELLLPSQQETPLQQRAAA 2160 (2526)
Q Consensus 2093 ~~~~vl~~Ll~lL~~~--p~-~~~~vL~~L~aL~s~t~lVkqal~~---------GgvlyLL~LL~~s~e~~~~~~R~~a 2160 (2526)
+++ ++..|+.++... |. ....++.++-.+.......++.+.. -.++.+|-.+.++ ..+...|..+
T Consensus 309 ~~g-~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~--~~~~~lR~Aa 385 (651)
T 3grl_A 309 QCG-LLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNE--RQPFVLRCAV 385 (651)
T ss_dssp HTT-HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCT--TSCHHHHHHH
T ss_pred HCC-CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcc--cccHHHHHHH
Confidence 765 677777777653 33 3455777777777666666666543 2233322222332 2478899999
Q ss_pred HHHHHHHhcCCCCChHHHHHHHhhCcHH
Q 000056 2161 ASLLGKLVGQPMHGPRVAITLARFLPDG 2188 (2526)
Q Consensus 2161 A~lL~kM~aDklhGPrV~~~L~KfLP~~ 2188 (2526)
+..|+....+-..| =..+.+.|+|..
T Consensus 386 ~~cl~ay~~~N~~~--Q~~i~~~llp~~ 411 (651)
T 3grl_A 386 LYCFQCFLYKNQKG--QGEIVSTLLPST 411 (651)
T ss_dssp HHHHHHHHTTCHHH--HHHHHHTTSSCC
T ss_pred HHHHHHHHhCCHHH--HHHHHHhcCCcc
Confidence 99999998763222 236677888854
No 90
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=61.38 E-value=16 Score=42.12 Aligned_cols=80 Identities=14% Similarity=0.291 Sum_probs=55.5
Q ss_pred EEEEEeecccc---cceEEEEeecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceee
Q 000056 24 RYLVVKHSWRG---RYKRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKF 100 (2526)
Q Consensus 24 ~y~vtKhSWrg---kYkRif~Ig~~~i~T~nP~tlevTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~K~~~mkF 100 (2526)
.|+..|..-+| --..++.|+..||..|||.|-+++..|+| ++|..++.. .+.|+|.+.. . +...+.|
T Consensus 128 ~~f~v~~~~~g~~~~~~~~LgI~~~GI~v~~~~tk~~l~~~~~-~~I~~~~~~------~~~f~I~~~~--~-~~~~~~~ 197 (222)
T 4f7g_A 128 SFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSL-TNIKRWAAS------PKSFTLDFGD--Y-QDGYYSV 197 (222)
T ss_dssp EEEEEEEECTTSSCEEEEEEEECSSEEEEECTTTCCEEEEEEG-GGCCEEEEC------SSEEEEECCT--T-SSSCEEE
T ss_pred EEEEEEEecCCCCCCCCEEEEEcCCcEEEEcCCCCceeEeccH-HHeeeeccC------CCEEEEEECC--c-cceEEEE
Confidence 34444543223 23789999999999999999999999999 799887741 3679998752 2 2235777
Q ss_pred echhhhHHHHHHHH
Q 000056 101 SSRFRASILTELHR 114 (2526)
Q Consensus 101 ss~~Ra~lLT~l~r 114 (2526)
.|.. ++.+.+|..
T Consensus 198 ~T~q-~~~I~~Li~ 210 (222)
T 4f7g_A 198 QTTE-GEQIAQLIA 210 (222)
T ss_dssp ECSC-HHHHHHHHH
T ss_pred ECCc-HHHHHHHHH
Confidence 7754 444555544
No 91
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=60.99 E-value=11 Score=50.65 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcC---ChhHHHHHHhhcchHHHHHH
Q 000056 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT---CASCLEAMVADGSSLLLLLQ 2103 (2526)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~---n~~CVeaiA~~~~vl~~Ll~ 2103 (2526)
.+++.||.|++. +|.....+...+.+..++.-+-.. ++..|+..|...|..|+. ...|. .|...+ ++..|+.
T Consensus 52 ~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D--~~~~Vr~~A~gaLrnL~~~~g~d~~~-~l~~~~-il~~L~~ 126 (684)
T 4gmo_A 52 TTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTD--NNIDSRAAGWEILKVLAQEEEADFCV-HLYRLD-VLTAIEH 126 (684)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTC--SCHHHHHHHHHHHHHHHHHSCHHHHH-HHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCC--CCHHHHHHHHHHHHHHHhhcCchHHH-HHHHcC-hHHHHHH
Confidence 578999999996 666666666666666655443222 356788888888877763 34454 466655 7888887
Q ss_pred HHhhCc----------------------chHHHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHH
Q 000056 2104 MLHYAP----------------------ACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAA 2160 (2526)
Q Consensus 2104 lL~~~p----------------------~~~~~vL~~L~aL~s-~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~a 2160 (2526)
++.... +..+.++.+|..|+. +.+.+......|++..|+..|.+. +..+..++..+
T Consensus 127 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~-~~~~~~v~~~a 205 (684)
T 4gmo_A 127 AAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA-DIAPQDIYEEA 205 (684)
T ss_dssp HHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH-CCSCHHHHHHH
T ss_pred HHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc-CCCcHHHHHHH
Confidence 775310 122336677777775 456677777888888899887543 34567889999
Q ss_pred HHHHHHHhcC
Q 000056 2161 ASLLGKLVGQ 2170 (2526)
Q Consensus 2161 A~lL~kM~aD 2170 (2526)
+..|..+..|
T Consensus 206 ~~~L~~ls~d 215 (684)
T 4gmo_A 206 ISCLTTLSED 215 (684)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcc
Confidence 9988887765
No 92
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=56.34 E-value=16 Score=47.71 Aligned_cols=133 Identities=13% Similarity=0.168 Sum_probs=90.6
Q ss_pred cchhHHHHHHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhhhhcccchhcccchhhHHHHHHhhcCCCChh
Q 000056 522 FPAAVGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHATMMHTKSVLFSQQGYLIVLVNRLRPMSVSP 601 (2526)
Q Consensus 522 ~p~~~~~v~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~~~~~nKs~ll~~~~~~~~L~~~l~~~~~~a 601 (2526)
+|..+..|+..|...+|.|...|+++|.-.. . .++ ++ ..+..|-+.|.....=+
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-----~--------p~~-----l~--------~LL~iLWd~L~~LDDLS 350 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-----I--------TDS-----LD--------LVLEKCWKNIESEELIS 350 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-----C--------SST-----HH--------HHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-----c--------hhh-----HH--------HHHHHHHHHhhhhcccc
Confidence 5666678899999999999999998875433 1 111 11 12344444444333223
Q ss_pred HHHHHHHHHHhhhccCCCCCCCChHHHHHHHHHHHhhhhHHHHhhCCChhhHHhHHHHHHHHHHhhcHHHHHHHHHHHHh
Q 000056 602 LLSMAVVEVLETMICEPHSETTQYTVFVELLRQVAGLRRRLFALFGHPAESVRETVAVIMRTIAEEDAIAAESMRDAALR 681 (2526)
Q Consensus 602 Lv~~a~l~~l~~~lC~P~seTT~~~~f~~ll~~va~~gr~lf~Lf~hp~~~i~~~aglimrai~Ee~~~~a~~mq~~AL~ 681 (2526)
--..+++|+|....+-|-.-..++ .+=.+||-.|.|+-.+|++++--.+.++.
T Consensus 351 ASTgSVMdLLAkL~s~p~~a~~dp-----------~LVPRL~PFLRHtITSVR~AVL~TL~tfL---------------- 403 (800)
T 3oc3_A 351 VSKTSNLSLLTKIYRENPELSIPP-----------ERLKDIFPCFTSPVPEVRTSILNMVKNLS---------------- 403 (800)
T ss_dssp TTHHHHHHHHHHHHHHCTTCCCCS-----------GGGGGTGGGGTCSSHHHHHHHHHHTTTCC----------------
T ss_pred hhhHHHHHHHHHHHcCCcccccCh-----------HHHHHHHhhhcCCcHHHHHHHHHHHHHHH----------------
Confidence 345677888888887775433332 66788999999999999999877776655
Q ss_pred hcHHHHHHHHHhcCCCC-chhHHHHHH
Q 000056 682 DGALLRHLLHAFFLPAG-ERREVSRQL 707 (2526)
Q Consensus 682 eGall~HL~~Alf~~~~-~~r~lsr~L 707 (2526)
.|.+|||+.+-+-...+ +-+++|.++
T Consensus 404 ~~~~LRLIFQNILLE~neeIl~lS~~V 430 (800)
T 3oc3_A 404 EESIDFLVAEVVLIEEKDEIREMAIKL 430 (800)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 67899999887765543 457777654
No 93
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=50.72 E-value=5.1e+02 Score=34.54 Aligned_cols=278 Identities=14% Similarity=0.140 Sum_probs=133.1
Q ss_pred CCChhhHHHHHHHHhcCChh----HHHHHHhhcchHHHHHHHHhh---CcchHHHHHHHHHHhhcch--HHHHHHHHcCC
Q 000056 2067 DSNIPQLCLNVLSLLTTCAS----CLEAMVADGSSLLLLLQMLHY---APACREGVLHVLYALASTP--ELAWAAAKHGG 2137 (2526)
Q Consensus 2067 ~~~vq~~aL~VL~~ls~n~~----CVeaiA~~~~vl~~Ll~lL~~---~p~~~~~vL~~L~aL~s~t--~lVkqal~~Gg 2137 (2526)
++.+...++.++..+...-. +.... ...++..++..+.. .++.+..++++|..+...- .+... +.
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~----~~ 221 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSS--SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE----GE 221 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSH----HH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHH--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccCh----hH
Confidence 34567778888776653210 00111 11245555666654 3456677888887765311 11000 01
Q ss_pred HhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHH-hhCcHHHHHHHhcCchhhHHHhhcccCcCccccc
Q 000056 2138 VVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLA-RFLPDGLVSVIRDGPGEAVVSALEQTTETPELVW 2216 (2526)
Q Consensus 2138 vlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~-KfLP~~fvdamrdsP~~a~v~~fds~~EnPELIW 2216 (2526)
..|++..|+...+.....+|..+++.|.++... ++..+...+. .+++ .+ +..+. .+
T Consensus 222 ~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~--~~~~~~~~l~~~l~~-~~------------~~~~~----~~---- 278 (861)
T 2bpt_A 222 RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK--YYTFMKPYMEQALYA-LT------------IATMK----SP---- 278 (861)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH--HGGGCHHHHHHTHHH-HH------------HHHTT----CS----
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HH------------HHHHc----CC----
Confidence 234555443222234688999999999998753 2222222222 2222 11 11221 11
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcccccccccCCCcEEeeeeehhhccCCCCCCCCh---HHHHHHHHH
Q 000056 2217 TPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNP---KRFLEGLLD 2293 (2526)
Q Consensus 2217 n~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~P---K~FL~~Ll~ 2293 (2526)
+++.|....+.+..++......... +.+ + .+|+.+.| +.++..++.
T Consensus 279 ~~~vr~~a~~~l~~l~~~~~~~~~~--------------~~~---~--------------~~~~~~~~~~~~~~~~~il~ 327 (861)
T 2bpt_A 279 NDKVASMTVEFWSTICEEEIDIAYE--------------LAQ---F--------------PQSPLQSYNFALSSIKDVVP 327 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH---C--------------TTCSCCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhh--------------hhh---c--------------cCCchhhHHHHHHHHHHHHH
Confidence 3677888777777776553211100 000 0 12233332 456677888
Q ss_pred HHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCCccccCc
Q 000056 2294 QYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTY 2373 (2526)
Q Consensus 2294 ~~~~~~~~~~~e~~~~d~~ll~llt~Alv~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 2373 (2526)
.++..+...+.|.+.-+..+-.....++..|...-+ + ..+|.++..+...-.
T Consensus 328 ~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~---~-----~~~~~l~~~l~~~l~-------------------- 379 (861)
T 2bpt_A 328 NLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG---N-----HILEPVLEFVEQNIT-------------------- 379 (861)
T ss_dssp HHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG---G-----GGHHHHHHHHHHHTT--------------------
T ss_pred HHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc---H-----hHHHHHHHHHHHHcC--------------------
Confidence 887777764332211111222223334433333222 2 235666665543110
Q ss_pred CCCCCCCCCCCChhhhhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhhccCchH--hHHHHHHHHHh
Q 000056 2374 ESDDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGSI--LALETLKRVVV 2447 (2526)
Q Consensus 2374 ~~~~~~~~~~~~~~~~~~~s~l~vlh~ls~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~~--la~etL~r~~~ 2447 (2526)
.+..++|..++..|-.++.+.. .+.+... -+.++|.+++.+......+ -++.+|.++..
T Consensus 380 -----------~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~---l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~ 440 (861)
T 2bpt_A 380 -----------ADNWRNREAAVMAFGSIMDGPD-KVQRTYY---VHQALPSILNLMNDQSLQVKETTAWCIGRIAD 440 (861)
T ss_dssp -----------CSSHHHHHHHHHHHHHTSSSSC-HHHHHHH---HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred -----------CCChhHHHHHHHHHHHHHcCCC-HHHHHHH---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 0113578899999998886521 1222111 0235777777776543322 56666666554
No 94
>1j0w_A Downstream of tyrosine kinase 5; beta strands, ALFA helix, transferase; 2.50A {Homo sapiens} SCOP: b.55.1.2
Probab=46.56 E-value=43 Score=34.76 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=50.7
Q ss_pred cceEEEEeeceEEEecCCC-CceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCChHH
Q 000056 139 VPYKLKVTYVGVELTDLRS-GDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTNSA 213 (2526)
Q Consensus 139 ~p~~L~Vt~~~leq~d~~~-g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~r----~~l~~~~~~~~~ 213 (2526)
-++.|++|+.+|...|+.+ +.++...+|+.+...+- | .+.|.+. -|+.+- +|.|.+. +-++
T Consensus 21 G~~~L~l~~~~l~L~~~~~~~~~l~~Wp~~~LRRyG~----~-------~~~FsFE--aGRrC~tG~G~f~F~~~-~~~~ 86 (103)
T 1j0w_A 21 GECALQITYEYICLWDVQNPRVKLISWPLSALRRYGR----D-------TTWFTFE--AGRMCETGEGLFIFQTR-DGEA 86 (103)
T ss_dssp EEEEEEECSSEEEEEESSSTTBEEEEEEGGGEEEEEE----C-------SSEEEEE--ECSSSSSCSEEEEEECS-CHHH
T ss_pred ccEEEEECCCEEEEEecCCCCcceEEeeHHHHhhcCc----c-------CCEEEEE--eCCCCCCCCcEEEEEcC-CHHH
Confidence 4789999999999998865 46899999999985333 3 3677663 454333 7888874 6667
Q ss_pred HHHHHHHHH
Q 000056 214 IVSSLTKTA 222 (2526)
Q Consensus 214 ii~~i~~~A 222 (2526)
|.+.+..++
T Consensus 87 If~~v~~ai 95 (103)
T 1j0w_A 87 IYQKVHSAA 95 (103)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877775544
No 95
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=46.42 E-value=2.6e+02 Score=31.73 Aligned_cols=135 Identities=15% Similarity=0.149 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHhcHHHHHHhhccchhHHHHHHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhhhhcccc
Q 000056 498 TVMGFVACLRRLLTSRTAASHVMSFPAAVGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHATMMHTK 577 (2526)
Q Consensus 498 ~~~~~~~aLrRL~as~~gf~~~~~~p~~~~~v~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~~~~~nK 577 (2526)
-..+.+.||..|+.. .|-..-..++..+..|+..|+-++..|..+|...|.+++..+
T Consensus 73 V~~~a~~~l~~la~~-l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~---------------------- 129 (242)
T 2qk2_A 73 LVAMAGKCLALLAKG-LAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST---------------------- 129 (242)
T ss_dssp HHHHHHHHHHHHHHH-HGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS----------------------
T ss_pred HHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC----------------------
Confidence 344667788877732 221111233456678999999999999999999999988621
Q ss_pred hhcccchhhHHHHHHhhcCCCChhHHHHHHHHHHhhhccCCCC-CCCChHHHHHHHHHHHhhhhHHHHhhCCChhhHHhH
Q 000056 578 SVLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMICEPHS-ETTQYTVFVELLRQVAGLRRRLFALFGHPAESVRET 656 (2526)
Q Consensus 578 s~ll~~~~~~~~L~~~l~~~~~~aLv~~a~l~~l~~~lC~P~s-eTT~~~~f~~ll~~va~~gr~lf~Lf~hp~~~i~~~ 656 (2526)
+-+.+++.|+..+.+. .+.|=..++.++..+++. ++ +......+..++. .|+.+..++...|+++
T Consensus 130 ----~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~-~~~~~~~~~~l~~l~p-------~l~~~l~D~~~~VR~~ 195 (242)
T 2qk2_A 130 ----SLEAQQESIVESLSNK--NPSVKSETALFIARALTR-TQPTALNKKLLKLLTT-------SLVKTLNEPDPTVRDS 195 (242)
T ss_dssp ----CHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTT-CCGGGCCHHHHHHHHH-------HHHHHHTSSCHHHHHH
T ss_pred ----CHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH-cCCCCccHHHHHHHHH-------HHHHHhcCCChHHHHH
Confidence 1134667788888764 578999999999988754 21 1122344444444 4567778999999998
Q ss_pred HHHHHHHHHhh-cH
Q 000056 657 VAVIMRTIAEE-DA 669 (2526)
Q Consensus 657 aglimrai~Ee-~~ 669 (2526)
|.-.|-.|+.. |.
T Consensus 196 A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 196 SAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHcCH
Confidence 88877776665 54
No 96
>2cy5_A Epidermal growth factor receptor pathway substrate 8-like protein 1; structural genomics, signal transduction, phosphorylation, PTB domain, NPPSFA; 1.90A {Mus musculus} SCOP: b.55.1.2 PDB: 2cy4_A
Probab=42.90 E-value=54 Score=35.83 Aligned_cols=78 Identities=12% Similarity=0.038 Sum_probs=54.7
Q ss_pred ccCCccc-ceEEEEeeceEEEecCCCCceEEEeeccCCCcc-ceeeeccccCCCCCCCcEEEeeccC--CCccccccCCC
Q 000056 133 RRNSEWV-PYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSP-AIVLLSDAYGKRSETGGFVLCPLYG--RKSKAFQAAPG 208 (2526)
Q Consensus 133 ~~k~~w~-p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~-~i~~l~d~~~~~~~~ggfvl~~~~g--~~~r~~l~~~~ 208 (2526)
+.++-|. ...|+|++.+|..+|+.||+.+=+|+...|..+ ++..... |++=+++.---+ ++.-+|+|.|.
T Consensus 42 ~kg~iW~Q~m~L~v~~~~v~LlD~et~eelE~fpl~~I~~~~av~~~~~------y~siLllv~q~~~~~~~~iH~FQc~ 115 (140)
T 2cy5_A 42 SQGRVWAQEMLLRVSPSQVTLLDPVSKEELESYPLDAIVRCDAVMPRGR------SRSLLLLVCQEPERAQPDVHFFQGL 115 (140)
T ss_dssp HTTCCCCEEEEEEECSSEEEEECTTTCCEEEEEEGGGEEEEEEECCSSC------SSCEEEEEECCTTCSSCEEEEEEEC
T ss_pred HcCCcccceeEEEECCCeEEEEccCccchhhcCChhhceeccccCCccc------cCcEEEEEEecCCCCCccEEEEEec
Confidence 4588999 999999999999999999999999999999865 3322222 355554421112 34559999986
Q ss_pred CChHHHHH
Q 000056 209 TTNSAIVS 216 (2526)
Q Consensus 209 ~~~~~ii~ 216 (2526)
.-..+.|.
T Consensus 116 ev~A~~v~ 123 (140)
T 2cy5_A 116 LLGAELIR 123 (140)
T ss_dssp TTHHHHHH
T ss_pred cccHHHHH
Confidence 33334333
No 97
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=42.02 E-value=1.5e+02 Score=34.37 Aligned_cols=127 Identities=10% Similarity=0.192 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhcHHHHHHhhccchhHHHHHHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCch-hhhhhhhccc
Q 000056 498 TVMGFVACLRRLLTSRTAASHVMSFPAAVGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSK-GEQHATMMHT 576 (2526)
Q Consensus 498 ~~~~~~~aLrRL~as~~gf~~~~~~p~~~~~v~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~d~~-~e~~~~~~~n 576 (2526)
.....+.|||=|+-.+.|+..+..-|..+..|..+|...+..+...|+++|.++.. .++. .. ++.--+.+-+
T Consensus 70 ~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~-~~~~------~G~~~~VL~Al~~ 142 (233)
T 2f31_A 70 NQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCI-LPQP------EDMNERVLEAMTE 142 (233)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHT-CSSS------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHh-CCCC------CChHHHHHHHHHH
Confidence 44467999999999999999999999999999999998888899999999998543 2221 01 2221111112
Q ss_pred chhcccchhhHHHHHHhhcCCCChhHHHHHHHHHHhhhccCCCCCCCChHHHHHHHHHHHh
Q 000056 577 KSVLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMICEPHSETTQYTVFVELLRQVAG 637 (2526)
Q Consensus 577 Ks~ll~~~~~~~~L~~~l~~~~~~aLv~~a~l~~l~~~lC~P~seTT~~~~f~~ll~~va~ 637 (2526)
.+. ++.+..++.|++.++..+. .=...+.+.|+-..+..| .|-.....+-.+.-.
T Consensus 143 ~~~-~~e~~RF~~lv~~l~~~~~-~e~~~~~m~lIN~li~~~----~dl~~R~~lR~ef~~ 197 (233)
T 2f31_A 143 RAE-MDEVERFQPLLDGLKSGTS-IALKVGCLQLINALITPA----EELDFRVHIRSELMR 197 (233)
T ss_dssp HHH-HHTSCTTHHHHHTTSTTSC-HHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHH
T ss_pred HHH-hCCcchHHHHHHHHhcCCh-HHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHH
Confidence 222 3566678889998876433 233455666777777554 366666666555533
No 98
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain, phosphoprotein, signaling protei structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Probab=41.18 E-value=53 Score=36.49 Aligned_cols=75 Identities=13% Similarity=0.042 Sum_probs=48.6
Q ss_pred cccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCc--cccccCCCCC-hHH
Q 000056 137 EWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKS--KAFQAAPGTT-NSA 213 (2526)
Q Consensus 137 ~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~--r~~l~~~~~~-~~~ 213 (2526)
+|.+|.|.|++.||-.+|+.++.++..|+.++|. +... |. .++.-|+..--.++.. .-|+|.|... -.+
T Consensus 76 k~~~V~L~VS~~GI~l~d~~t~~~l~~~~i~~IS---f~~~-d~----~~~~~FafIar~~~~~~~~CHvF~c~~~~A~~ 147 (168)
T 3f0w_A 76 KSVKSVLWVSADGLRVVDDKTKDLLVDQTIEKVS---FCAP-DR----NLDKAFSYICRDGTTRRWICHCFLALKDSGER 147 (168)
T ss_dssp -CEEEEEEECSSEEEEEETTTCCEEEEEEGGGEE---EEEE-CS----SCTTEEEEEEEETTTTEEEEEEEEESSSCHHH
T ss_pred CCcEEEEEEECCEEEEEeCCCCeEEEeeecCcEE---EEec-CC----CCCcEEEEEEecCCCCcEEEEEEEeccchHHH
Confidence 4889999999999999999999999999999886 3321 21 1234554321122222 3688887522 444
Q ss_pred HHHHHH
Q 000056 214 IVSSLT 219 (2526)
Q Consensus 214 ii~~i~ 219 (2526)
|+..|-
T Consensus 148 I~~aIg 153 (168)
T 3f0w_A 148 LSHAVG 153 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
No 99
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=40.93 E-value=3.8e+02 Score=33.52 Aligned_cols=133 Identities=13% Similarity=0.234 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhcHHHHHHhhccchhHHHHHHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhh-hhhcccch
Q 000056 500 MGFVACLRRLLTSRTAASHVMSFPAAVGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQH-ATMMHTKS 578 (2526)
Q Consensus 500 ~~~~~aLrRL~as~~gf~~~~~~p~~~~~v~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~-~~~~~nKs 578 (2526)
-..+.|||=|+-.+.|+..+..-|..+..++.+|...+..+...|+++|.++.- .++..+ .++.- .++.+-|.
T Consensus 138 ~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~-~~~~~g-----G~~~VL~Al~~~~~ 211 (383)
T 3eg5_B 138 HEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCI-LPQPED-----MNERVLEAMTERAE 211 (383)
T ss_dssp HHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHT-CCSSTT-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHh-CcCcCC-----cHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999999999988653 221000 11111 11222232
Q ss_pred hcccchhhHHHHHHhhcCCCChhHHHHHHHHHHhhhccCCCCCCCChHHHHHHHHHH--HhhhhHHHHh
Q 000056 579 VLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMICEPHSETTQYTVFVELLRQV--AGLRRRLFAL 645 (2526)
Q Consensus 579 ~ll~~~~~~~~L~~~l~~~~~~aLv~~a~l~~l~~~lC~P~seTT~~~~f~~ll~~v--a~~gr~lf~L 645 (2526)
.+....+..|++-|+....-.+ ..+.+.|+-..+..| .|-.....+-.+. +++.+-|=+|
T Consensus 212 --~~e~~RF~~lv~~L~~~~~~e~-~~~~m~lIN~li~~~----~dl~~R~~lR~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 212 --MDEVERFQPLLDGLKSGTSIAL-KVGCLQLINALITPA----EELDFRVHIRSELMRLGLHQVLQEL 273 (383)
T ss_dssp --HHTSCTTHHHHHTTSTTSCHHH-HHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred --hCCCCcHHHHHHHHHccCcHHH-HHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHCChHHHHHHH
Confidence 4666778899999987543333 345566777777655 3677777777666 4444444443
No 100
>1p5t_A DOK1, docking protein 1; signaling protein; 2.35A {Mus musculus} SCOP: b.55.1.2 PDB: 1uef_A*
Probab=39.65 E-value=48 Score=35.68 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=51.9
Q ss_pred ceEEEEeeceEEEecC----CCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCCh
Q 000056 140 PYKLKVTYVGVELTDL----RSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTN 211 (2526)
Q Consensus 140 p~~L~Vt~~~leq~d~----~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~r----~~l~~~~~~~ 211 (2526)
++.|+|++..|...|+ .+.++++.++|+.|...+. |. +-|.+. -|+.+- +|.|.+. +.
T Consensus 26 ~y~L~vt~~~l~L~~~~~~~~~~~~l~~Wp~~~LRryG~----d~-------~~FsFE--aGRrC~tGeG~f~F~t~-~~ 91 (127)
T 1p5t_A 26 SYILRVEAEKLTLLTLGAQSQILEPLLFWPYTLLRRYGR----DK-------VMFSFE--AGRRCPSGPGTFTFQTS-QG 91 (127)
T ss_dssp EEEEEECSSEEEEEEECTTTCSEEEEEEEEGGGEEEEEE----CS-------SEEEEE--ECTTSTTCSEEEEEECS-CH
T ss_pred cEEEEEcCCEEEEEecCcccCCCcceEEEehHHhhhcCc----cC-------CEEEEE--ecCCCCCCCcEEEEEeC-CH
Confidence 8999999999999974 3567899999999996553 42 556553 554433 7888884 77
Q ss_pred HHHHHHHHHHHhh
Q 000056 212 SAIVSSLTKTAKS 224 (2526)
Q Consensus 212 ~~ii~~i~~~A~~ 224 (2526)
++|.+.|..+.+.
T Consensus 92 ~~If~~l~~~i~~ 104 (127)
T 1p5t_A 92 NDIFQAVEAAIQQ 104 (127)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877655544
No 101
>2v76_A Docking protein 1; alternative splicing, protein-binding, PTB domain, phosphorylation, adaptor protein; HET: PGE; 1.60A {Homo sapiens}
Probab=38.93 E-value=48 Score=34.66 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=50.9
Q ss_pred ceEEEEeeceEEEecC----CCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCCh
Q 000056 140 PYKLKVTYVGVELTDL----RSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTN 211 (2526)
Q Consensus 140 p~~L~Vt~~~leq~d~----~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~r----~~l~~~~~~~ 211 (2526)
+++|+|++.+|...++ .+++.++.++|+.|...+. |. +-|.+. -|+.+- +|.|.+. +.
T Consensus 24 ~y~L~v~~~~l~L~~~~~~~~~~~~~~~Wp~~~LRryG~----d~-------~~FsFE--aGRrc~tG~G~f~F~~~-~~ 89 (107)
T 2v76_A 24 SYVLRVEAERLTLLTVGAQSQILEPLLSWPYTLLRRYGR----DK-------VMFSFE--AGRRCPSGPGTFTFQTA-QG 89 (107)
T ss_dssp EEEEEECSSEEEEEEEC----CEEEEEEEEGGGEEEEEE----CS-------SEEEEE--ECTTSTTCSEEEEEECS-CH
T ss_pred cEEEEEcCCEEEEEecCccCCCCceeEEEEhHHhhhcCc----cC-------CEEEEE--ecCCCCCCCcEEEEEeC-CH
Confidence 7999999999999873 4568899999999986443 42 455553 454333 7888884 77
Q ss_pred HHHHHHHHHHHhh
Q 000056 212 SAIVSSLTKTAKS 224 (2526)
Q Consensus 212 ~~ii~~i~~~A~~ 224 (2526)
++|.+.|..+.+.
T Consensus 90 ~~If~~l~~~i~~ 102 (107)
T 2v76_A 90 NDIFQAVETAIHR 102 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7888888765543
No 102
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=38.38 E-value=1.1e+02 Score=33.58 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=54.6
Q ss_pred cCCccc---ceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCccc--cccCCC
Q 000056 134 RNSEWV---PYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSKA--FQAAPG 208 (2526)
Q Consensus 134 ~k~~w~---p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~r~--~l~~~~ 208 (2526)
.++-|- ...|.|+..+|-.+||.|..++.+|+-..|. +.-...+. +-...|++.--.+..+|. |+|.|+
T Consensus 47 ~~~~wg~gq~~~L~v~~~tlrLvD~~tk~~L~~~pI~~I~---f~~~gr~~---~~~~dFAfv~rd~~t~~~~CHvFrCe 120 (148)
T 3d8d_A 47 MSGGWGEGKDLLLQLEDETLKLVEPQSQALLHAQPIISIR---VWGVGRDS---GRERDFAYVARDKLTQMLKCHVFRCE 120 (148)
T ss_dssp TSTTCSTTCEEEEEEETTEEEEECTTTCCEEEEEEGGGCC---EEEECCCC-----CCEEEEEEECTTTCCEEEEEEEES
T ss_pred cccccccCceEEEEEcCCeEEEecCCCCceEEEeeEEEEE---EEeCCCCC---CccccEEEEEecCCCcceEeEEEEcC
Confidence 357777 6899999999999999999999999999886 44322221 011147764335555554 889987
Q ss_pred CChHHHHHHHHHH
Q 000056 209 TTNSAIVSSLTKT 221 (2526)
Q Consensus 209 ~~~~~ii~~i~~~ 221 (2526)
..-+.|-+++.+.
T Consensus 121 ~~a~~Ia~al~~~ 133 (148)
T 3d8d_A 121 APAKNIATSLHEI 133 (148)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHH
Confidence 4444444444443
No 103
>2dlw_A Docking protein 2, isoform A; IRS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.99 E-value=40 Score=35.58 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=53.4
Q ss_pred ceEEEEeeceEEE-ecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCChHHH
Q 000056 140 PYKLKVTYVGVEL-TDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTNSAI 214 (2526)
Q Consensus 140 p~~L~Vt~~~leq-~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~r----~~l~~~~~~~~~i 214 (2526)
++.|+|++.+|.. .|+.++.++...+|+.|...+. | .+-|.+. -|+.+- +|.|.+. +-++|
T Consensus 29 ~y~L~l~~~~l~L~~~~~~~~~l~~Wpl~~LRryG~----d-------~~~FsfE--aGRrC~tGeG~f~F~t~-~~~~i 94 (113)
T 2dlw_A 29 SYTLRAGESALELWGGPEPGTQLYDWPYRFLRRFGR----D-------KVTFSFE--AGRRCVSGEGNFEFETR-QGNEI 94 (113)
T ss_dssp EEEEEECSSBEECCCSSSSCCCSSCCBGGGCCCEEE----E-------TTEEEEE--ECSSCSSCSEEEEECCS-THHHH
T ss_pred cEEEEEcCCEEEEEecCCCCCceEEEEhHHhhhcCc----c-------CCEEEEE--ecCCCCCCCCEEEEEcC-CHHHH
Confidence 8999999999998 6888999999999999996444 3 2455553 554443 7888884 77888
Q ss_pred HHHHHHHHhh
Q 000056 215 VSSLTKTAKS 224 (2526)
Q Consensus 215 i~~i~~~A~~ 224 (2526)
.+.+..+.++
T Consensus 95 f~~l~~~i~~ 104 (113)
T 2dlw_A 95 FLALEEAISA 104 (113)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888665443
No 104
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member 2; phosphotyrosine-interaction domain, amyloid disease, structural genomics; NMR {Mus musculus} SCOP: b.55.1.2 PDB: 2roz_B
Probab=37.45 E-value=1.1e+02 Score=33.22 Aligned_cols=75 Identities=8% Similarity=0.130 Sum_probs=48.5
Q ss_pred CCcccceEEEEeeceEEEecCCC-CceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc--ccccCCCCCh
Q 000056 135 NSEWVPYKLKVTYVGVELTDLRS-GDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK--AFQAAPGTTN 211 (2526)
Q Consensus 135 k~~w~p~~L~Vt~~~leq~d~~~-g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~r--~~l~~~~~~~ 211 (2526)
+..|.+|.|.|++.||..+|..+ +++++-..-++|. +..+ |. .+--|.+.--.+ ..| -|+|-|+.+-
T Consensus 50 ~~~~~~v~l~Vs~~gi~v~~~~~~~~~l~~~~l~~IS---Fc~~-d~-----~~k~FaFI~~~~-~~~f~CHvF~c~~~A 119 (136)
T 1wgu_A 50 KEDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLS---FMGV-GK-----DVHTFAFIMDTG-NQRFECHVFWCEPNA 119 (136)
T ss_dssp TTTSCEEEEEEETTEEEEECSSCSSCEEEEEETTTEE---EEEE-CS-----STTCEEEEEECS-SSCEEEEEEECSSCT
T ss_pred cccCceEEEEEccCEEEEEecCCCCceeccceEEEee---eEec-CC-----CCcEEEEEEcCC-CccEEEEEEEcCcch
Confidence 45699999999999999999876 5888887766664 5543 32 133444321223 333 5777787555
Q ss_pred HHHHHHHH
Q 000056 212 SAIVSSLT 219 (2526)
Q Consensus 212 ~~ii~~i~ 219 (2526)
.+|-+.|.
T Consensus 120 ~~vs~aV~ 127 (136)
T 1wgu_A 120 ANVSEAVQ 127 (136)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 105
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus}
Probab=37.07 E-value=1e+02 Score=32.65 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=44.6
Q ss_pred CcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCC--ccccccCCC
Q 000056 136 SEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRK--SKAFQAAPG 208 (2526)
Q Consensus 136 ~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~--~r~~l~~~~ 208 (2526)
.+|.++.|.|++.||-.+|+.++.++..|+.+.|. +.. .|. .++.-|+...-.+.. -.-|+|.|.
T Consensus 41 ~~~~~v~L~Vs~~gi~l~d~~~~~~~~~~~i~~Is---f~~-~d~----~~~~~FafI~r~~~~~~~~CHvF~c~ 107 (137)
T 3so6_A 41 KKLQKVTLKVSPRGIILTDSLTSQLIENVSIYRIS---YCT-ADK----MHDKVFAYIAQSQQNESLECHAFLCT 107 (137)
T ss_dssp SCCEEEEEEEETTEEEEEETTTCCEEEEEEGGGEE---EEE-ECS----SSTTEEEEEEECSSSSCEEEEEEECS
T ss_pred CCCCEEEEEEeCCeEEEEECCCCcEEEeeccCEEE---EEE-ecC----CCCCEEEEEEEcCCCCeEEEEEEEeC
Confidence 36779999999999999999999999999988885 332 121 124566543122222 246888874
No 106
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=37.06 E-value=30 Score=42.91 Aligned_cols=81 Identities=14% Similarity=0.302 Sum_probs=57.9
Q ss_pred EEEEEEeecccccc---eEEEEeecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCccccee
Q 000056 23 ARYLVVKHSWRGRY---KRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFK 99 (2526)
Q Consensus 23 a~y~vtKhSWrgkY---kRif~Ig~~~i~T~nP~tlevTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~K~~~mk 99 (2526)
+.|+..|..-+|+- ..++.|+..||..||+.|-++...|+| ++|..++.. .+.|+|.+... +..++.
T Consensus 281 ~~~f~vk~~~~g~~~~~~~~LgI~~~GI~v~~~~~k~~l~~~~~-~~I~~~~~~------~~~f~I~~~~~---~~~~~~ 350 (371)
T 3ivf_A 281 VSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSL-TNIKRWAAS------PKSFTLDFGDY---QDGYYS 350 (371)
T ss_dssp CEEEEEEEECTTSSCEEEEEEEECSSEEEEEETTTCCEEEEEEG-GGCCEEEEE------TTEEEEECGGG---SSSCEE
T ss_pred cEEEEEEEeccCCCCCccEEEEEcCCcEEEEcCCCCceEEeeeh-hheeeeecC------CCEEEEEECCc---cCcEEE
Confidence 45666664444432 478999999999999999999999999 799888762 46899997532 224577
Q ss_pred eechhhhHHHHHHHH
Q 000056 100 FSSRFRASILTELHR 114 (2526)
Q Consensus 100 Fss~~Ra~lLT~l~r 114 (2526)
|.|.. ++-+.+|..
T Consensus 351 ~~T~~-~~~I~~Li~ 364 (371)
T 3ivf_A 351 VQTTE-GEQIAQLIA 364 (371)
T ss_dssp EECSC-HHHHHHHHH
T ss_pred EECCh-HHHHHHHHH
Confidence 87754 444555544
No 107
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=36.14 E-value=61 Score=36.47 Aligned_cols=76 Identities=13% Similarity=0.224 Sum_probs=53.0
Q ss_pred cccceEEEEeecCe-----eee----eCC-CCcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeec
Q 000056 33 RGRYKRILCISNAT-----IIT----LDP-NTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSS 102 (2526)
Q Consensus 33 rgkYkRif~Ig~~~-----i~T----~nP-~tlevTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~K~~~mkFss 102 (2526)
-+|.+|++|++... |.- .|. .++.+--+|+. .|+-.|.-. ...+.+|+|++.| ...=..-+.
T Consensus 62 ~~KK~R~L~lav~~~~sgrV~lhK~K~N~ngsfsiGkTW~L-~ELk~Ie~~---~~~~~gF~ltl~K----~Y~W~a~s~ 133 (171)
T 3hie_A 62 ENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQL-TELVRVEKD---LEISEGFILTMSK----KYYWETNSA 133 (171)
T ss_dssp GGEEEEEEEEEECTTCTTCEEEEEEEECTTSCEEEEEEEEG-GGCCEEEEC---SSCTTEEEEESSS----EEEEECSSH
T ss_pred CCccceEEEEEEecCCCceEEEEEEEECCCCcEEeeeeeec-ccceeeecc---CCCCCcEEEEeCC----eEEEecCCH
Confidence 46889999986553 322 344 45899999999 798887753 1236799999843 323233345
Q ss_pred hhhhHHHHHHHHhh
Q 000056 103 RFRASILTELHRIR 116 (2526)
Q Consensus 103 ~~Ra~lLT~l~r~r 116 (2526)
..|...++.|.++.
T Consensus 134 ~Er~~FI~sL~K~y 147 (171)
T 3hie_A 134 KERTVFIKSLITLY 147 (171)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88999999999976
No 108
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=35.20 E-value=73 Score=37.23 Aligned_cols=137 Identities=15% Similarity=0.116 Sum_probs=64.0
Q ss_pred HHHHHHHHH-HHhhCccchhhccccCC-hhhhhcccCCCCCCCCChhhHHHHHHHHhcCCh--hHHH-HHHhhcchHHHH
Q 000056 2027 QFGLTSLQN-ILTSNPNLASIFSTKEK-LLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCA--SCLE-AMVADGSSLLLL 2101 (2526)
Q Consensus 2027 ~maL~AL~n-LL~~nP~la~~~~s~~~-L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~--~CVe-aiA~~~~vl~~L 2101 (2526)
..++++|.. ++..+|.+..+...+.. +..|-..|.. ..+..+...|+++|..++..- .-++ .-+ ..+++.+
T Consensus 34 k~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~--D~n~~v~~~A~~al~~la~~l~~~~f~~~y~--~~llp~l 109 (249)
T 2qk1_A 34 VEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK--DANIQAVALAAQSVELICDKLKTPGFSKDYV--SLVFTPL 109 (249)
T ss_dssp HHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhcccccccHHHH--HHHHHHH
Confidence 356888888 88888876532222222 2223333321 234557788888888777211 0111 111 1245555
Q ss_pred HHHHhhC-cchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000056 2102 LQMLHYA-PACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2526)
Q Consensus 2102 l~lL~~~-p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aD 2170 (2526)
+..+... +..+..+-..|.+++.+..-+ ..++-+..+++-|...-+..++++|.++...|+++...
T Consensus 110 l~~l~dkk~~V~~aa~~al~~i~~~~~~~---~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 110 LDRTKEKKPSVIEAIRKALLTICKYYDPL---ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHHHSCTT---CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHcccc---ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 5555432 222222222222222110000 00010223333222111223789999999999999864
No 109
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus}
Probab=33.98 E-value=59 Score=36.02 Aligned_cols=71 Identities=11% Similarity=0.058 Sum_probs=50.0
Q ss_pred CcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccC------CCccccccCCCC
Q 000056 136 SEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYG------RKSKAFQAAPGT 209 (2526)
Q Consensus 136 ~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g------~~~r~~l~~~~~ 209 (2526)
..|..|.|.|.+.||..+|+.+++++..++.++|. +. +|. +.-|+.. ... ....-|+|.|+
T Consensus 50 ~~~~~V~L~IS~~gIkv~d~~t~~~i~~~~l~~IS---f~--a~~------~~~f~fI-ar~~~~~~~~~~~CHVF~~~- 116 (162)
T 4dbb_A 50 QPMTEVDLFISTQRIKVLNADTQEPMMDHPLRTIS---YI--ADI------GNIVVLM-ARRRMPRSQYKMICHVFESE- 116 (162)
T ss_dssp CCCEEEEEEEESSEEEEEETTTCCEEEEEEGGGEE---EE--EEE------TTEEEEE-EEECCSTTCEEEEEEEEECT-
T ss_pred CCCcEEEEEEECCEEEEEECCCCcEEeeeecceeE---EE--EEC------CCEEEEE-eccCCCCCCCcEEEEEEECC-
Confidence 45789999999999999999999999999999886 43 343 2445432 111 23347888886
Q ss_pred ChHHHHHHHH
Q 000056 210 TNSAIVSSLT 219 (2526)
Q Consensus 210 ~~~~ii~~i~ 219 (2526)
+-++|+..|-
T Consensus 117 ~A~~I~~tig 126 (162)
T 4dbb_A 117 DAQLIAQSIG 126 (162)
T ss_dssp THHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4555655554
No 110
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} SCOP: b.55.1.0 PDB: 3dxd_A 3dxc_A
Probab=32.99 E-value=74 Score=34.71 Aligned_cols=75 Identities=8% Similarity=0.146 Sum_probs=50.0
Q ss_pred CCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc--ccccCCCCChH
Q 000056 135 NSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK--AFQAAPGTTNS 212 (2526)
Q Consensus 135 k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~r--~~l~~~~~~~~ 212 (2526)
+..|.||.|.|.+.||..+|+.+.++++-..-++|. +..+ |. +.--|.+.--.| ..| =|.|-|+.+-.
T Consensus 42 ~~~~~~v~l~Vs~~gi~v~~~~t~e~l~~~~i~~IS---Fcg~-~k-----d~k~FafI~~~~-~~~f~CHvF~c~~~A~ 111 (140)
T 3dxe_A 42 REQWTPSHVSVAPATLTILHQQTEAVLGECRVRFLS---FLAV-GR-----DVHTFAFIMAAG-PASFCCHMFWCEPNAA 111 (140)
T ss_dssp GGGCEEEEEEECSSEEEEEETTTCCEEEEEEGGGEE---EEEE-CS-----STTEEEEEEEEE-TTEEEEEEEEEESCSH
T ss_pred cCCCceEEEEEcCCEEEEEecCCcceeeeccEEEEe---eecc-CC-----CCcEEEEEecCC-CccEEEEEEecCcchH
Confidence 347999999999999999999899999988777775 5543 31 245555432223 233 46666765544
Q ss_pred HHHHHHH
Q 000056 213 AIVSSLT 219 (2526)
Q Consensus 213 ~ii~~i~ 219 (2526)
+|...+.
T Consensus 112 ~vs~aV~ 118 (140)
T 3dxe_A 112 SLSEAVQ 118 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 111
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=32.78 E-value=1.3e+02 Score=35.35 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhhCccchhh---ccccCChhhhh-cccCCCCCCCCChhhHHHHHHHHhcCChhH-------HHHHHhhcc
Q 000056 2028 FGLTSLQNILTSNPNLASI---FSTKEKLLPLF-ECFSVPFAPDSNIPQLCLNVLSLLTTCASC-------LEAMVADGS 2096 (2526)
Q Consensus 2028 maL~AL~nLL~~nP~la~~---~~s~~~L~~Lf-~~L~~~~~~~~~vq~~aL~VL~~ls~n~~C-------VeaiA~~~~ 2096 (2526)
-+++.|..++..++..... ......+..++ .++. ..+..++..+++++..+...... ....+ ..
T Consensus 28 eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~---DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~--~~ 102 (278)
T 4ffb_C 28 EAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT---DSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLI--ST 102 (278)
T ss_dssp HHHHHHHHHHHTC----------CCTTSCTHHHHHHTT---CSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHH--HH
T ss_pred HHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHH--HH
Confidence 4678888888887764322 12223333333 2332 34566788999999877643211 11111 12
Q ss_pred hHHHHHH-HHhh-CcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCC
Q 000056 2097 SLLLLLQ-MLHY-APACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHG 2174 (2526)
Q Consensus 2097 vl~~Ll~-lL~~-~p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhG 2174 (2526)
+++.|+. ++.. .+..+..+++++..++.. .+....+++.+....+..+|.+|..+...|.++... +|
T Consensus 103 ~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~---------~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~--fg 171 (278)
T 4ffb_C 103 WTPLLVEKGLTSSRATTKTQSMSCILSLCGL---------DTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA--FG 171 (278)
T ss_dssp HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHT---------SSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH--HT
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHh---------cCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH--hC
Confidence 3333332 2322 233444566666555421 111222333333322345899999999999999875 55
Q ss_pred hH
Q 000056 2175 PR 2176 (2526)
Q Consensus 2175 Pr 2176 (2526)
++
T Consensus 172 ~~ 173 (278)
T 4ffb_C 172 LT 173 (278)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 112
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=32.63 E-value=3.8e+02 Score=33.24 Aligned_cols=176 Identities=18% Similarity=0.194 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhhCccchhhccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHH
Q 000056 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQML 2105 (2526)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL 2105 (2526)
+..+|..|+..++.-+.++..+++.+++..|+..... ...+++..+|..+..+=.+...-+.+.+....+..+..++
T Consensus 135 lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~---~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv 211 (339)
T 3dad_A 135 LRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA---ADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLC 211 (339)
T ss_dssp HHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT---SCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh---cChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHH
Confidence 4566888888888889999999999999888887643 3678999999999988888666666665444555555555
Q ss_pred hhC-cchHHHHHHHHHHhhc----chHHHHHHHH-----cC--CHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCC
Q 000056 2106 HYA-PACREGVLHVLYALAS----TPELAWAAAK-----HG--GVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMH 2173 (2526)
Q Consensus 2106 ~~~-p~~~~~vL~~L~aL~s----~t~lVkqal~-----~G--gvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklh 2173 (2526)
.+. +.....+|++|..++. +..+|.+++. .| -+..|+.+|-.. +..+.+...-+-.++.++..- .-
T Consensus 212 ~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~-~~~D~elq~~amtLIN~lL~~-ap 289 (339)
T 3dad_A 212 ASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEK-NGADPELLVYTVTLINKTLAA-LP 289 (339)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTT-TSCCHHHHHHHHHHHHHHHHH-CS
T ss_pred cCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHhc-CC
Confidence 432 2334558888877764 4457777766 22 256778888521 234677777777778777652 22
Q ss_pred ChHHHHHHHhhCcHHHHHHHhcCchhhHHHh-hcccCcCccc
Q 000056 2174 GPRVAITLARFLPDGLVSVIRDGPGEAVVSA-LEQTTETPEL 2214 (2526)
Q Consensus 2174 GPrV~~~L~KfLP~~fvdamrdsP~~a~v~~-fds~~EnPEL 2214 (2526)
+++-+ .-+++++....-+.+|+- +......|||
T Consensus 290 d~d~~--------~di~d~Le~~gi~~~i~r~l~~~~~~~~l 323 (339)
T 3dad_A 290 DQDSF--------YDVTDALEQQGMEALVQRHLGTAGTDVDL 323 (339)
T ss_dssp SHHHH--------HHHHHHHHHTTHHHHHHHHHSCTTSCHHH
T ss_pred ChhHH--------HHHHHHHHHccHHHHHHHHHhccCCCHHH
Confidence 22211 145555655544434443 3333345555
No 113
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor protein-binding family B member...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus} PDB: 2yt1_A
Probab=31.80 E-value=1e+02 Score=34.84 Aligned_cols=92 Identities=8% Similarity=0.073 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHh-hhhhcccccCCCcceecccCCcccceEEEEeeceEEEecCCC-CceEEEeeccCCCccceeeecccc
Q 000056 104 FRASILTELHRI-RWVRLNAVAEFPVLHLRRRNSEWVPYKLKVTYVGVELTDLRS-GDLRWCLDFRDMDSPAIVLLSDAY 181 (2526)
Q Consensus 104 ~Ra~lLT~l~r~-r~~~~~~~~~f~~~~~~~~k~~w~p~~L~Vt~~~leq~d~~~-g~~~~~y~y~d~~~~~i~~l~d~~ 181 (2526)
--.+++.++.+- +.+ ..+.+|.+|.|.|++.||..+|..+ .++++-..-++|. |..+ |.
T Consensus 78 ~G~dVl~~AI~kl~~~--------------~~~~~~~~V~L~VS~~gI~v~d~~t~~evl~~c~l~~IS---Fcgv-d~- 138 (176)
T 2yt0_A 78 VGMDTLNSAIENLMTS--------------SSKEDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLS---FMGV-GK- 138 (176)
T ss_dssp SCHHHHHHHHHHHHHH--------------SCTTTSCEEEEECGGGEEEEEESSCTTCEEEEEETTTCC---EEEE-CS-
T ss_pred ccHHHHHHHHHHHHhc--------------cCcccCcceEEEEcCCEEEEEecCCCcceecccceEEee---eEcc-CC-
Confidence 446778887653 311 1245699999999999999999877 5888888877775 5543 32
Q ss_pred CCCCCCCcEEEeeccCCCcc--ccccCCCCChHHHHHHHH
Q 000056 182 GKRSETGGFVLCPLYGRKSK--AFQAAPGTTNSAIVSSLT 219 (2526)
Q Consensus 182 ~~~~~~ggfvl~~~~g~~~r--~~l~~~~~~~~~ii~~i~ 219 (2526)
..--|.+.--.+ ..| -|+|.|+.+-.+|-+.|.
T Consensus 139 ----d~k~FaFI~~~~-~~~f~CHVF~cek~A~~ls~aI~ 173 (176)
T 2yt0_A 139 ----DVHTFAFIMDTG-NQRFECHVFWCEPNAANVSEAVQ 173 (176)
T ss_dssp ----STTEEEEEEEEE-TTEEEEEEEEESSCSHHHHHHHH
T ss_pred ----CCcEEEEEEeCC-CCCEEEEEEEccCChhHHHHHHH
Confidence 134444321222 223 577778755555555443
No 114
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=31.48 E-value=51 Score=39.77 Aligned_cols=69 Identities=20% Similarity=0.361 Sum_probs=50.8
Q ss_pred EEEEEeecccccceEEEEeecCeeeeeCCCCcc-cccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeec
Q 000056 24 RYLVVKHSWRGRYKRILCISNATIITLDPNTLA-VTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSS 102 (2526)
Q Consensus 24 ~y~vtKhSWrgkYkRif~Ig~~~i~T~nP~tle-vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~K~~~mkFss 102 (2526)
.|+..|.. .| =+-++.|+..||..|++++-. ..+.|+| ++|..++.. .+.|+|.++.. +..++.|.|
T Consensus 221 ~~f~v~~~-~g-~~~~LgI~~~Gi~v~~~~~k~~~~~~f~w-~~I~~~~~~------~~~f~i~~~~~---~~~~~~f~~ 288 (314)
T 1h4r_A 221 NYFAIRNK-KG-TELLLGVDALGLHIYDPENRLTPKISFPW-NEIRNISYS------DKEFTIKPLDK---KIDVFKFNS 288 (314)
T ss_dssp EEEEEEET-TC-CEEEEEECSSEEEEECTTCSSSCSEEEEG-GGEEEEEEE------TTEEEEEESST---TSCCEEEEC
T ss_pred eEEEeecC-CC-CEEEEEEeCCceEEEeCCCCcccceEEec-ccceEEEee------CCEEEEEEcCC---CCceEEEEc
Confidence 45555532 23 578999999999999999864 6789999 799887762 35899998642 345788876
Q ss_pred hh
Q 000056 103 RF 104 (2526)
Q Consensus 103 ~~ 104 (2526)
..
T Consensus 289 ~~ 290 (314)
T 1h4r_A 289 SK 290 (314)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=30.44 E-value=1.2e+02 Score=39.16 Aligned_cols=189 Identities=14% Similarity=0.135 Sum_probs=103.4
Q ss_pred HHHhhCcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 000056 2103 QMLHYAPACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLA 2182 (2526)
Q Consensus 2103 ~lL~~~p~~~~~vL~~L~aL~s~t~lVkqal~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~ 2182 (2526)
.....=|++...++++++.||. +...++|.++.+-|-.++.| -+-+||.-+|.
T Consensus 54 kffk~FP~l~~~Ai~a~lDLcE--------------------------Ded~~IR~qaik~Lp~~ck~-~~i~kiaDvL~ 106 (507)
T 3u0r_A 54 KFFKHFPELADSAINAQLDLCE--------------------------DEDVSIRRQAIKELPQFATG-ENLPRVADILT 106 (507)
T ss_dssp HHGGGCGGGHHHHHHHHHHHHT--------------------------CSSHHHHHHHHHHGGGGCCT-TCHHHHHHHHH
T ss_pred HHHhhChhhHHHHHHHHHHHHh--------------------------cccHHHHHHHHHhhHHHhhh-hhhhhHHHHHH
Confidence 3445567777777777777663 22455666666666666666 55666666666
Q ss_pred hhCcH-----------HHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHH------------HHHHHHH
Q 000056 2183 RFLPD-----------GLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMA------------SDLYREQ 2239 (2526)
Q Consensus 2183 KfLP~-----------~fvdamrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~------------~~~~~~Q 2239 (2526)
++|-. .|++-++-+|..+.-.+|.+... . ++.+|+++-.+|..-. ++|....
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~-~----~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ 181 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ-G----EDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE 181 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-S----CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc-c----chHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHH
Confidence 66653 78888888887665555555444 3 5788888877774332 2222222
Q ss_pred hcCCcccccCCcccccccccCCCcE--Eee-eeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHH
Q 000056 2240 MKGRVVDWDVPEQASAQQEMRDEPQ--VGG-IYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLL 2316 (2526)
Q Consensus 2240 ~~~~~~~W~lPe~f~~y~~l~~El~--VGG-VYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~l 2316 (2526)
...- + .+.. ..|.. +.= =++++|=. | ....+|++-+.+.+.-..+ -+..|+ +.
T Consensus 182 ikK~-----L-~DVT-----~~EF~L~m~lL~~lkl~~t--------~-~g~qeLv~ii~eQa~L~~~-f~~sD~---e~ 237 (507)
T 3u0r_A 182 SKKV-----L-EDVT-----GEEFVLFMKILSGLKSLQT--------V-SGRQQLVELVAEQADLEQT-FNPSDP---DC 237 (507)
T ss_dssp HHHH-----T-TSCC-----HHHHHHHHHHHHTSGGGSS--------H-HHHHHHHHHHHHHHTTTSC-CCSSCH---HH
T ss_pred HHHH-----h-cccc-----HHHHHHHHHHHHhcccccC--------c-hHHHHHHHHHHHHHhccCC-CCCcCH---HH
Confidence 1100 0 0000 01110 000 12233311 3 2235677777776544211 122343 56
Q ss_pred HHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhh
Q 000056 2317 LSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYE 2351 (2526)
Q Consensus 2317 lt~Alv~LL~~qp~LaD~vp~lG~lpkl~~~l~~~ 2351 (2526)
+-+-+-|+-++-|-.+-.+.+ .|++..|..+
T Consensus 238 vdRlI~C~~~ALP~FS~~v~S----tkFv~y~~~k 268 (507)
T 3u0r_A 238 VDRLLQCTRQAVPLFSKNVHS----TRFVTYFCEQ 268 (507)
T ss_dssp HHHHHHHHHHHGGGCBTTBCC----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCh----HHHHHHHHHh
Confidence 677778888888888776664 4566666544
No 116
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and amyloid beta A4 protein...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus}
Probab=30.28 E-value=1.2e+02 Score=34.61 Aligned_cols=75 Identities=8% Similarity=0.130 Sum_probs=48.4
Q ss_pred CCcccceEEEEeeceEEEecCCC-CceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc--ccccCCCCCh
Q 000056 135 NSEWVPYKLKVTYVGVELTDLRS-GDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK--AFQAAPGTTN 211 (2526)
Q Consensus 135 k~~w~p~~L~Vt~~~leq~d~~~-g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~r--~~l~~~~~~~ 211 (2526)
+..|.+|.|.|++.||..+|..+ +++++-..-++|. +..+ |. ..-.|.+.--.+ ..| -|+|.|+.+-
T Consensus 50 ~~k~~~V~L~VS~~gI~v~d~~t~~e~l~~~~I~~IS---Fc~v-d~-----d~k~FaFI~~~~-~~~f~CHVF~c~k~A 119 (185)
T 2ysz_A 50 KEDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLS---FMGV-GK-----DVHTFAFIMDTG-NQRFECHVFWCEPNA 119 (185)
T ss_dssp TTTSCEEEEEEETTEEEEEESSCSSCEEEEECTTTCC---EEEC-CS-----STTEEEEEEESS-SSCEEEEEEEESSCS
T ss_pred cccCceEEEEEecCEEEEEecCCCcceeeeccEEEee---eecc-CC-----CCcEEEEEecCC-CccEEEEEEEccCch
Confidence 45799999999999999999876 5788887766664 5543 32 244555431233 233 4677676444
Q ss_pred HHHHHHHH
Q 000056 212 SAIVSSLT 219 (2526)
Q Consensus 212 ~~ii~~i~ 219 (2526)
.+|-..|.
T Consensus 120 ~~vs~aV~ 127 (185)
T 2ysz_A 120 ANVSEAVQ 127 (185)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
Confidence 45555554
No 117
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=29.32 E-value=42 Score=40.43 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=49.1
Q ss_pred EEEEEeecccccceEEEEeecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCC-cccceeeec
Q 000056 24 RYLVVKHSWRGRYKRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRG-KFKAFKFSS 102 (2526)
Q Consensus 24 ~y~vtKhSWrgkYkRif~Ig~~~i~T~nP~tlevTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~-K~~~mkFss 102 (2526)
.|+..|-+ .| -+-++.|+..||.-|++++- .|.|+| ++|..++.. .+.|+|.++.++++ +..++.|.+
T Consensus 207 ~~f~vk~~-~~-~~~~LgV~~~Gi~v~~~~~k--l~~f~w-~~I~~~s~~------~k~F~i~~~~~~~~~~~~~~~f~~ 275 (296)
T 3qij_A 207 DLHKAKDL-EG-VDIILGVCSSGLLVYKDKLR--INRFPW-PKVLKISYK------RSSFFIKIRPGEQEQYESTIGFKL 275 (296)
T ss_dssp EEEEEECT-TS-CEEEEEECSSEEEEEETTEE--EEEEEG-GGEEEEEEE------TTEEEEEEC-------CEEEEEEC
T ss_pred eEEEEEcC-CC-CEEEEEECCCeEEEEeCCCe--EEEEEh-hhcCEEEec------CCEEEEEEecCccCCccceEEEEC
Confidence 45555644 23 46789999999999999873 689999 799888762 35899999875432 346788876
Q ss_pred hh
Q 000056 103 RF 104 (2526)
Q Consensus 103 ~~ 104 (2526)
+.
T Consensus 276 ~~ 277 (296)
T 3qij_A 276 PS 277 (296)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 118
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=29.29 E-value=2.1e+02 Score=35.80 Aligned_cols=130 Identities=11% Similarity=0.195 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHhcHHHHHHhhccchhHHHHHHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhhhhcccc
Q 000056 498 TVMGFVACLRRLLTSRTAASHVMSFPAAVGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHATMMHTK 577 (2526)
Q Consensus 498 ~~~~~~~aLrRL~as~~gf~~~~~~p~~~~~v~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~~~~~nK 577 (2526)
..-..+.|||=|+-++.|+..+..-|..+..+..+|...+..+...|+++|.++.. .++... +++.--..+-+.
T Consensus 74 ~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~-~~~~~G-----~~~~VL~Al~~~ 147 (386)
T 2bnx_A 74 NQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCI-LPQPED-----MNERVLEAMTER 147 (386)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHT-CCSSTT-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHc-CCCCCC-----hHHHHHHHHHHH
Confidence 34457899999999999999999999999999999998888899999999988653 222100 122221222233
Q ss_pred hhcccchhhHHHHHHhhcCCCChhHHHHHHHHHHhhhccCCCCCCCChHHHHHHHHHHHhhh
Q 000056 578 SVLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMICEPHSETTQYTVFVELLRQVAGLR 639 (2526)
Q Consensus 578 s~ll~~~~~~~~L~~~l~~~~~~aLv~~a~l~~l~~~lC~P~seTT~~~~f~~ll~~va~~g 639 (2526)
+. ++....+..|++.++..+. .=...+.+.|+-..+..| .|-.....+-.+.-.+|
T Consensus 148 ~~-~~e~~RF~~lv~~l~~~~~-~e~~~a~m~lIN~lv~~~----~dl~~R~~LR~Ef~~~G 203 (386)
T 2bnx_A 148 AE-MDEVERFQPLLDGLKSGTS-IALKVGCLQLINALITPA----EELDFRVHIRSELMRLG 203 (386)
T ss_dssp HH-HHTSCTTHHHHHHTSTTSC-HHHHHHHHHHHHHHHTTC----SCHHHHHHHHHHHHHTT
T ss_pred HH-hCchhhHHHHHHHHHcCCh-HHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHCC
Confidence 33 3666778889998886433 234455666777777554 36666667766663333
No 119
>1xr0_B FGFR signalling adaptor SNT-1; phosphotyrosine binding domain, PTB, TRK, NPXPY motif,, signaling protein/growth factor receptor complex; NMR {Homo sapiens} SCOP: b.55.1.2
Probab=28.17 E-value=1.2e+02 Score=32.71 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=54.6
Q ss_pred CCCcceecccCCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc---
Q 000056 125 EFPVLHLRRRNSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK--- 201 (2526)
Q Consensus 125 ~f~~~~~~~~k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~r--- 201 (2526)
.|.|+.+...+-.--++.|+||...|...++ +.....++|+.+...+. | .+.|.+. -|+.+-
T Consensus 13 ~F~V~~~~~~~~e~g~~~L~lt~~~L~L~~~--~~~~~~Wp~~~LRrYG~----d-------~~~FsFE--aGRRC~tGe 77 (129)
T 1xr0_B 13 KFKVINVDDDGNELGSGIMELTDTELILYTR--KRDSVKWHYLCLRRYGY----D-------SNLFSFE--SGRRCQTGQ 77 (129)
T ss_dssp EEEEEEECSSCCCCCCEEEEECSSCEEEEET--TTEEEEECSTTEEEEEE----C-------SSEEEEE--ECSCSTTCS
T ss_pred EEEEEEeCCCCCcceeEEEEEecCEEEEEeC--CCCeeEcchHHhhhcCc----c-------CCEEEEE--cCCCCCCCC
Confidence 3444443322222358999999999999875 56677889999985443 3 3677663 444333
Q ss_pred -ccccCCCCChHHHHHHHHHHHh
Q 000056 202 -AFQAAPGTTNSAIVSSLTKTAK 223 (2526)
Q Consensus 202 -~~l~~~~~~~~~ii~~i~~~A~ 223 (2526)
+|.|.+. +-++|.+.+....+
T Consensus 78 GiF~F~t~-~~~~If~~l~~~i~ 99 (129)
T 1xr0_B 78 GIFAFKCA-RAEELFNMLQEIMQ 99 (129)
T ss_dssp EEEEEECS-CHHHHHHHHHHHHH
T ss_pred cEEEEEcC-CHHHHHHHHHHHHh
Confidence 7888874 77778777765544
No 120
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=28.08 E-value=65 Score=40.39 Aligned_cols=90 Identities=11% Similarity=0.109 Sum_probs=66.0
Q ss_pred hhhHHHhcCHHHHHHHHHHhhhcccCCCCCCCccceeehhhhhhhhhhccChHHHHHHHhhcchHHHHHHhhccccchhH
Q 000056 1662 GEELVRDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCTELELVPGA 1741 (2526)
Q Consensus 1662 aeeL~re~G~~~L~~~lsrC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l~l~~~~~l 1741 (2526)
.+++. .+|+..|..++.+|..--.. ........+-..|+||+...-....++..+...+..+.-|+.|+. ...+.+
T Consensus 103 V~~F~-~~Gl~~Ll~iL~~~~~~~~~--~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~-s~~~~~ 178 (383)
T 3eg5_B 103 VQTFG-AEGLASLLDILKRLHDEKEE--TSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNM 178 (383)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCC-TTSHHH
T ss_pred HHHHH-HccHHHHHHHHHHHhhcccc--ccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhC-CCchHH
Confidence 36666 67999999999988532211 122333455668999999999999999999999999999998875 344677
Q ss_pred HHHHHHHHHHhhCC
Q 000056 1742 VDAALQTIAHVSVS 1755 (2526)
Q Consensus 1742 ~~aALe~v~~~a~~ 1755 (2526)
...|+|.+..+|.-
T Consensus 179 ~~~aleLL~~lc~~ 192 (383)
T 3eg5_B 179 MIDAAKLLSALCIL 192 (383)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC
Confidence 77889988887653
No 121
>2dyq_A Amyloid beta A4 precursor protein-binding family 3; phosphotyrosine-interaction domain (PTB/PID alzheimer'S disease, structural genomics, NPPSFA; 3.10A {Homo sapiens}
Probab=27.62 E-value=1e+02 Score=33.76 Aligned_cols=77 Identities=13% Similarity=0.201 Sum_probs=47.1
Q ss_pred CCcccceEEEEeeceEEEecC-----CCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc--ccccCC
Q 000056 135 NSEWVPYKLKVTYVGVELTDL-----RSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK--AFQAAP 207 (2526)
Q Consensus 135 k~~w~p~~L~Vt~~~leq~d~-----~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~r--~~l~~~ 207 (2526)
+.+|.||.|.|++.||..+|+ .+..+++-..-++|. |.-+ | + +.--|.+.--.| ..| -|+|.|
T Consensus 50 ~~~w~~v~l~Vs~~~i~v~~~~~~~~~~~~~l~~c~vr~IS---Fcgv-g---k--d~r~FaFI~~~~-~~~f~CHVF~c 119 (144)
T 2dyq_A 50 RNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRLVT---FIGV-G---R--DPHTFGLIADLG-RQSFQCAAFWC 119 (144)
T ss_dssp SCCCEEEEEEECSSEEEEEECC------CCCSSEEEGGGEE---EEEE-C---S--STTEEEEEEECS-SSCEEEEEEEC
T ss_pred cccCcceEEEEeccceEEeccccccccccceeeeceEEEEe---eeec-C---C--CCcEEEEEEeCC-CCcEEEEEEec
Confidence 457999999999999999987 367777776666554 4432 2 1 234444321122 222 678888
Q ss_pred CCChHHHHHHHHHH
Q 000056 208 GTTNSAIVSSLTKT 221 (2526)
Q Consensus 208 ~~~~~~ii~~i~~~ 221 (2526)
+.+-.+|-+.|.++
T Consensus 120 e~~A~~ls~aV~~A 133 (144)
T 2dyq_A 120 QPHAGGLSEAVQAA 133 (144)
T ss_dssp SSCTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHH
Confidence 76666666666543
No 122
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=26.64 E-value=4.1e+02 Score=30.93 Aligned_cols=138 Identities=13% Similarity=0.116 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHhcH---HHHH-Hh-hccchhHHHH-HHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhh
Q 000056 497 ATVMGFVACLRRLLTSR---TAAS-HV-MSFPAAVGRI-MGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQH 570 (2526)
Q Consensus 497 ~~~~~~~~aLrRL~as~---~gf~-~~-~~~p~~~~~v-~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~ 570 (2526)
.-+...++||.-++..- .+.. .+ ..+...+..+ -++|..+...+...|++.+..++.-....
T Consensus 70 ~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------------ 137 (278)
T 4ffb_C 70 VAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------------ 137 (278)
T ss_dssp HHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH------------
Confidence 34455677777766421 1111 11 1122233333 35677788889999999998888521111
Q ss_pred hhhcccchhcccchhhHHHHHHhhcCCCChhHHHHHHHHHHhhhccCCCCCCCChHHHHHHHHHHHhhhhHHHHhhCCCh
Q 000056 571 ATMMHTKSVLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMICEPHSETTQYTVFVELLRQVAGLRRRLFALFGHPA 650 (2526)
Q Consensus 571 ~~~~~nKs~ll~~~~~~~~L~~~l~~~~~~aLv~~a~l~~l~~~lC~P~seTT~~~~f~~ll~~va~~gr~lf~Lf~hp~ 650 (2526)
...++.++.-+... .|-|..+.+.++.-+|..=+..+-+...+ +...-..|.++|.|+.
T Consensus 138 -------------~~~~e~l~~~l~~K--npkv~~~~l~~l~~~l~~fg~~~~~~k~~------l~~i~~~l~k~l~d~~ 196 (278)
T 4ffb_C 138 -------------TQSVELVIPFFEKK--LPKLIAAAANCVYELMAAFGLTNVNVQTF------LPELLKHVPQLAGHGD 196 (278)
T ss_dssp -------------HHHHHHHGGGGGCS--CHHHHHHHHHHHHHHHHHHTTTTCCHHHH------HHHHGGGHHHHHTCSS
T ss_pred -------------HHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHhCCCcCCchhH------HHHHHHHHHHHHhCCc
Confidence 11223444444432 57889999999998886522222232221 2233456778999999
Q ss_pred hhHHhHHHHHHHHHHhh
Q 000056 651 ESVRETVAVIMRTIAEE 667 (2526)
Q Consensus 651 ~~i~~~aglimrai~Ee 667 (2526)
..|+++|.-++-++.--
T Consensus 197 ~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 197 RNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999887766543
No 123
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=26.01 E-value=1.3e+02 Score=35.92 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=74.2
Q ss_pred hhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhh-CcchHHHHHHHHHHhhcchHHHHHHH
Q 000056 2055 PLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY-APACREGVLHVLYALASTPELAWAAA 2133 (2526)
Q Consensus 2055 ~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~-~p~~~~~vL~~L~aL~s~t~lVkqal 2133 (2526)
-|.+-|+. +...+...+.++++.+. .++.-..++.+++..+.+ +.-.+..+|+.+..+.....+.
T Consensus 136 ~LveKlGd---~k~~vR~~~r~il~~l~-------~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---- 201 (266)
T 2of3_A 136 YLLLKTGE---AKDNMRTSVRDIVNVLS-------DVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---- 201 (266)
T ss_dssp HHHHGGGC---SSHHHHHHHHHHHHHHH-------HHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred HHHHHhCC---ChHHHHHHHHHHHHHHH-------HHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----
Confidence 34444443 34568888888887765 233333467777776653 4445667888877776432221
Q ss_pred HcCCH---hhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHH
Q 000056 2134 KHGGV---VYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVI 2193 (2526)
Q Consensus 2134 ~~Ggv---lyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~KfLP~~fvdam 2193 (2526)
...++ ..+..+|. +.+..+|..|...+..+-.. .|.+|...+.+ ||+.-.+.+
T Consensus 202 ~~~~l~~~~~ia~ll~----D~d~~VR~aAl~~lve~y~~--~Gd~v~k~lg~-L~~~~~~~l 257 (266)
T 2of3_A 202 PLKSLSVEKTVAPFVG----DKDVNVRNAAINVLVACFKF--EGDQMWKAAGR-MADKDKSLV 257 (266)
T ss_dssp GGGGGCHHHHHGGGGG----CSSHHHHHHHHHHHHHHHHH--HTTHHHHHHCC-CCHHHHHHH
T ss_pred ccccccchHHHHHHHc----CCCHHHHHHHHHHHHHHHHH--hhHHHHHHHhc-CCHHHHHHH
Confidence 12233 33444554 35789999999998888764 79999988877 677555444
No 124
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=24.75 E-value=48 Score=43.33 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=50.2
Q ss_pred eEEEEeecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeechhhhHHHHHHHHh
Q 000056 37 KRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSSRFRASILTELHRI 115 (2526)
Q Consensus 37 kRif~Ig~~~i~T~nP~tlevTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~K~~~mkFss~~Ra~lLT~l~r~ 115 (2526)
.=++.|+..||.-|++++-++.+.|+| ++|.++... ..+.|+|++. | | ++.|.|. .++-+++|...
T Consensus 467 ~l~LgV~~~GI~v~~~~~k~~l~~~~~-~~I~~~~~~-----~~~~f~i~~~--~--~--~l~f~T~-qa~~i~~LI~~ 532 (555)
T 3au4_A 467 ELWLGVSADAVSVYKRGEGRPLEVFQY-EHILSFGAP-----LANTYKIVVD--E--R--ELLFETS-EVVDVAKLMKA 532 (555)
T ss_dssp EEEEEECSSEEEEEETTCSSCSEEEEG-GGEEEEEEE-----ETTEEEEEET--T--E--EEEEECT-THHHHHHHHHH
T ss_pred eEEEEEcccceEEECCCCCeeEEEEEh-hheeeecCC-----CCCEEEEEEC--C--c--EEEEECC-CHHHHHHHHHH
Confidence 456999999999999999999999999 798877621 1357988765 3 3 4999995 46666666653
No 125
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=24.60 E-value=82 Score=36.65 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=64.5
Q ss_pred hhhHHHhcCHHHHHHHHHHhhhcccCCCCCCCccceeehhhhhhhhhhccChHHHHHHHhhcchHHHHHHhhccccchhH
Q 000056 1662 GEELVRDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCTELELVPGA 1741 (2526)
Q Consensus 1662 aeeL~re~G~~~L~~~lsrC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l~l~~~~~l 1741 (2526)
.+++ -.+|+..|...+.++...-...+ .+.....-..|++|+...-....+++.+...+..+.-|+.++. ...+.+
T Consensus 37 v~~F-~~~Gl~~L~~~L~~~~~~~~~~~--~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~-s~~~~~ 112 (233)
T 2f31_A 37 VQTF-GAEGLASLLDILKRLHDEKEETS--GNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNM 112 (233)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTCC-------CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCC-TTSHHH
T ss_pred HHHH-HHhHHHHHHHHHHHHHhcccccc--hhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhC-CCCchH
Confidence 3444 35799999999998854221110 1223445568899999999999999999999999988888875 444577
Q ss_pred HHHHHHHHHHhhCC
Q 000056 1742 VDAALQTIAHVSVS 1755 (2526)
Q Consensus 1742 ~~aALe~v~~~a~~ 1755 (2526)
...|+|.+..+|.-
T Consensus 113 r~~~leLL~~lc~~ 126 (233)
T 2f31_A 113 MIDAAKLLSALCIL 126 (233)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC
Confidence 77888888877654
No 126
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=24.22 E-value=41 Score=40.76 Aligned_cols=69 Identities=13% Similarity=0.289 Sum_probs=45.5
Q ss_pred eEEEEeecCeeeeeC-------CCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeechhhhHHH
Q 000056 37 KRILCISNATIITLD-------PNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSSRFRASIL 109 (2526)
Q Consensus 37 kRif~Ig~~~i~T~n-------P~tlevTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~K~~~mkFss~~Ra~lL 109 (2526)
|=.+-||+..+.-.- +.+..+++=+.. +||+.+... .++||+|.+..+ + .+|.|+|..|.+|+
T Consensus 205 ~V~lkIG~~~lQi~~~~k~~i~~~~~~~nDVy~l-sdI~ev~~~-----~~~eFti~~~n~---~-~~l~f~S~~~~eIv 274 (290)
T 3peg_A 205 KVSIKVGSTAVQVTSAERTKVLGQSVFLNDIYYA-SEIEEICLV-----DENQFTLTIANQ---G-TPLTFMHQECEAIV 274 (290)
T ss_dssp EEEEEECSSEEEEEESSCEEETTEEECCEEEEET-TTEEEEEEE-----ETTEEEEEETTC---S-SCEEEECTTHHHHH
T ss_pred CEEEEECCCEEEEEEeccEEccccCceeEEEEEe-eeeeEEEec-----CCCceEEEEeCC---c-EEEEEeCcCHHHHH
Confidence 456667776543222 123345555666 788776652 468999998532 2 56999999999999
Q ss_pred HHHHHh
Q 000056 110 TELHRI 115 (2526)
Q Consensus 110 T~l~r~ 115 (2526)
--+.--
T Consensus 275 ~~i~~a 280 (290)
T 3peg_A 275 QSIIHI 280 (290)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 127
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=23.75 E-value=6e+02 Score=27.45 Aligned_cols=141 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred hhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhh-CcchHHHHHHHHHHhhcchHHHHHH
Q 000056 2054 LPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY-APACREGVLHVLYALASTPELAWAA 2132 (2526)
Q Consensus 2054 ~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~-~p~~~~~vL~~L~aL~s~t~lVkqa 2132 (2526)
..+++.|... +..++..|+..|..+.. ...+..|+.+|.. .+..+..++..|..+...
T Consensus 17 ~~~i~~L~~~---~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------- 75 (201)
T 3ltj_A 17 EMYIKNLQDD---SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE------- 75 (201)
T ss_dssp HHHHHHTTCS---CHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------
T ss_pred HHHHHHhcCC---CHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------
Q ss_pred HHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcH-------HHHHHHhcCchhhHHHhh
Q 000056 2133 AKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPD-------GLVSVIRDGPGEAVVSAL 2205 (2526)
Q Consensus 2133 l~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~KfLP~-------~fvdamrdsP~~a~v~~f 2205 (2526)
..+..|+.+|.+. ++.+|..++..|+++ ..|.....|.++|-. .-+.++..-....++..+
T Consensus 76 ---~~~~~L~~~l~d~----~~~vr~~a~~aL~~~-----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L 143 (201)
T 3ltj_A 76 ---RAVEPLIKALKDE----DGWVRQSAAVALGQI-----GDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPL 143 (201)
T ss_dssp ---GGHHHHHHHTTCS----SHHHHHHHHHHHHHH-----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred ---HHHHHHHHHHcCC----CHHHHHHHHHHHHHh-----CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHH
Q ss_pred cccCcCcccccCHHHHHHHHHHHHHH
Q 000056 2206 EQTTETPELVWTPAMAASLSAQISTM 2231 (2526)
Q Consensus 2206 ds~~EnPELIWn~~mR~~v~~~i~~~ 2231 (2526)
...-.+| +...|......+..+
T Consensus 144 ~~~l~d~----~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 144 IKALKDE----DGWVRQSAADALGEI 165 (201)
T ss_dssp HHHTTCS----SHHHHHHHHHHHHHH
T ss_pred HHHHcCC----CHHHHHHHHHHHHHh
No 128
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens}
Probab=21.95 E-value=1.1e+02 Score=33.63 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=48.6
Q ss_pred cccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccC-------CCccccccCCCC
Q 000056 137 EWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYG-------RKSKAFQAAPGT 209 (2526)
Q Consensus 137 ~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g-------~~~r~~l~~~~~ 209 (2526)
++..|.|.|+..||..+|+.++.++..|+-++|. +. ++.+ .+..-|+..---. ....-|+|.|..
T Consensus 55 ~~~~v~L~VS~~gi~l~d~~tk~~~~~~~i~~IS---fc--a~d~---~~~r~FafIar~~~~~~~~~~~~~CHVF~~~~ 126 (160)
T 2ej8_A 55 RMTESHLLVTCDCLKLIDPQTQVTRLTFPLPCVV---LY--ATHQ---ENKRLFGFVLRTSSGRSESNLSSVCYIFESNN 126 (160)
T ss_dssp CCCEEEEEEESSEEEEECTTTCCEEEEEEGGGEE---EE--EEET---TEEEEEEEEEEECC------CEEEEEEEEESS
T ss_pred cCCEEEEEEECCeEEEEeCCCCeEEEEeeCCeEE---EE--EecC---CCCeEEEEEEecCCcccCCCccEEEEEEEcch
Confidence 5678999999999999999999999999999886 43 2321 0122444321111 112358888764
Q ss_pred ChHHHHHHHH
Q 000056 210 TNSAIVSSLT 219 (2526)
Q Consensus 210 ~~~~ii~~i~ 219 (2526)
.-.+|+..|-
T Consensus 127 ~A~~I~~tig 136 (160)
T 2ej8_A 127 EGEKICDSVG 136 (160)
T ss_dssp CHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4555665553
No 129
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=21.92 E-value=46 Score=39.51 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=36.3
Q ss_pred ccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeechhhhHHHHHHHHhh
Q 000056 56 AVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSSRFRASILTELHRIR 116 (2526)
Q Consensus 56 evTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~K~~~mkFss~~Ra~lLT~l~r~r 116 (2526)
..++=+.. +|++.|.- +.++||+|++..+ + .+|.|+|..|.+|+--+..-+
T Consensus 197 ~~ndVy~l-s~i~~v~t-----~~~~eFtl~~~n~---~-~~l~f~S~~~~eIv~~i~~a~ 247 (256)
T 3pg7_A 197 FLNDIYYA-SEIEEICL-----VDENQFTLTIANQ---G-TPLTFMHQECEAIVQSIIHIR 247 (256)
T ss_dssp CCEEEEEG-GGEEEEEE-----EETTEEEEEETTC---C-SCEEEECTTHHHHHHHHHHHH
T ss_pred eeEEEEEe-eeeEEEec-----CCCCCeEEEEeCC---c-EEEEEeCcCHHHHHHHHHHHH
Confidence 34555665 78877642 2468999998533 2 469999999999998776543
No 130
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.78 E-value=6.9e+02 Score=27.18 Aligned_cols=142 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred hhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhh-CcchHHHHHHHHHHhhcchHHHHH
Q 000056 2053 LLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY-APACREGVLHVLYALASTPELAWA 2131 (2526)
Q Consensus 2053 L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~-~p~~~~~vL~~L~aL~s~t~lVkq 2131 (2526)
+..|...|... +..++..++..|..+.. ...+..|+.++.. .+..+..++..|..+..
T Consensus 21 ~~~L~~~L~~~---~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 21 VEMYIKNLQDD---SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp HHHHHHHTTCS---SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Q ss_pred HHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcH-------HHHHHHhcCchhhHHHh
Q 000056 2132 AAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPD-------GLVSVIRDGPGEAVVSA 2204 (2526)
Q Consensus 2132 al~~GgvlyLL~LL~~s~e~~~~~~R~~aA~lL~kM~aDklhGPrV~~~L~KfLP~-------~fvdamrdsP~~a~v~~ 2204 (2526)
.+.+..|+.+|.+. ++.+|..++..|+++ ..|.....|.++|-. .-+.++..-....++..
T Consensus 80 ---~~~~~~L~~~l~~~----~~~vr~~a~~aL~~~-----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ 147 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDE----DGWVRQSAAVALGQI-----GDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEP 147 (211)
T ss_dssp ---GGGHHHHHHHTTCS----SHHHHHHHHHHHHHH-----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHH
T ss_pred ---HHHHHHHHHHHcCC----CHHHHHHHHHHHHHh-----CcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHH
Q ss_pred hcccCcCcccccCHHHHHHHHHHHHHH
Q 000056 2205 LEQTTETPELVWTPAMAASLSAQISTM 2231 (2526)
Q Consensus 2205 fds~~EnPELIWn~~mR~~v~~~i~~~ 2231 (2526)
|..--..| +...|......+..+
T Consensus 148 L~~~l~d~----~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 148 LIKALKDE----DGWVRQSAADALGEI 170 (211)
T ss_dssp HHHHTTCS----SHHHHHHHHHHHHHH
T ss_pred HHHHHcCC----CHHHHHHHHHHHHHh
No 131
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=21.50 E-value=2e+02 Score=32.88 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=49.5
Q ss_pred Cccc--ceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCC-ccccccCCCCChH
Q 000056 136 SEWV--PYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRK-SKAFQAAPGTTNS 212 (2526)
Q Consensus 136 ~~w~--p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~-~r~~l~~~~~~~~ 212 (2526)
|.|. ++.|=|++.||-.+|++++.++..|+|.+|.+ +. .. ..-|.|. +|.. ...|.|... +.+
T Consensus 138 g~~~~~~~~LgI~~~GI~v~~~~tk~~l~~~~~~~I~~--~~--~~-------~~~f~I~--~~~~~~~~~~~~T~-q~~ 203 (222)
T 4f7g_A 138 GKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKR--WA--AS-------PKSFTLD--FGDYQDGYYSVQTT-EGE 203 (222)
T ss_dssp TSSCEEEEEEEECSSEEEEECTTTCCEEEEEEGGGCCE--EE--EC-------SSEEEEE--CCTTSSSCEEEECS-CHH
T ss_pred CCCCCCCEEEEEcCCcEEEEcCCCCceeEeccHHHeee--ec--cC-------CCEEEEE--ECCccceEEEEECC-cHH
Confidence 5443 89999999999999999999999999999985 43 11 2567774 5543 224666653 565
Q ss_pred HHHHHHH
Q 000056 213 AIVSSLT 219 (2526)
Q Consensus 213 ~ii~~i~ 219 (2526)
+|..-|.
T Consensus 204 ~I~~Li~ 210 (222)
T 4f7g_A 204 QIAQLIA 210 (222)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 132
>2kup_A Fibroblast growth factor receptor substrate 3; complex, SNT-2, PTB domain, HALK, structural genomics, signa protein, NPPSFA; NMR {Homo sapiens} PDB: 2ys5_A
Probab=21.42 E-value=1.8e+02 Score=32.02 Aligned_cols=83 Identities=14% Similarity=0.101 Sum_probs=53.8
Q ss_pred CCCcceecccCCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc---
Q 000056 125 EFPVLHLRRRNSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK--- 201 (2526)
Q Consensus 125 ~f~~~~~~~~k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~ggfvl~~~~g~~~r--- 201 (2526)
.|.|.-+..-+-.--+++|+||+..|...++ +..+..++|+.+...+- | .+.|.+. -|+.+-
T Consensus 20 ~F~V~v~~~~~~e~G~~~L~Lt~~~L~L~~~--~~~~~~WPy~~LRRYG~----d-------~~~FsFE--aGRrC~tGe 84 (146)
T 2kup_A 20 KFKVTNVDDEGVELGSGVMELTQSELVLHLH--RREAVRWPYLCLRRYGY----D-------SNLFSFE--SGRRCQTGQ 84 (146)
T ss_dssp EEEEEEECTTCCEEEEEEEEECSSCEEEECS--SSCCEEECGGGCSCEEE----E-------TTEEEEE--ECTTSSSCS
T ss_pred EEEEEEeCCCCCcceeEEEEEccCEEEEEcC--CCCeeEcCHHHhhhcCc----c-------CCEEEEE--cCCCCCCCC
Confidence 4444433322222348999999999999976 45566779999986443 3 3677663 443332
Q ss_pred -ccccCCCCChHHHHHHHHHHHh
Q 000056 202 -AFQAAPGTTNSAIVSSLTKTAK 223 (2526)
Q Consensus 202 -~~l~~~~~~~~~ii~~i~~~A~ 223 (2526)
+|.|.+. +-++|...+....+
T Consensus 85 GiF~F~t~-~~e~If~~l~~~iq 106 (146)
T 2kup_A 85 GIFAFKCS-RAEEIFNLLQDLMQ 106 (146)
T ss_dssp EEEEEECT-THHHHHHHHHHHHT
T ss_pred CEEEEEcC-CHHHHHHHHHHHHh
Confidence 7888874 77778877765543
No 133
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}
Probab=21.17 E-value=1.4e+02 Score=36.32 Aligned_cols=91 Identities=13% Similarity=0.257 Sum_probs=63.3
Q ss_pred CCceEEEEEEEeec------------ccccceEEEEeecCe-----eee----e-CCCCccccccccccccccccccccc
Q 000056 18 ETEYLARYLVVKHS------------WRGRYKRILCISNAT-----IIT----L-DPNTLAVTNSYEVASDFEGATPIIG 75 (2526)
Q Consensus 18 ~~~~~a~y~vtKhS------------WrgkYkRif~Ig~~~-----i~T----~-nP~tlevTN~W~y~~d~~~i~p~~~ 75 (2526)
++.||+--=|+|-| =+.|.+||+||.... |.- . +-.++.+--+|+. .|+..|.-..+
T Consensus 105 ~ErYITHVrV~Eds~~ps~pPp~~s~~kkKK~R~LcLaV~~d~sGRV~LhKaKeN~ngsFsIGKTW~L-~ELk~Id~~~~ 183 (320)
T 3a58_A 105 PNNYITHVRIIEDSKFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQL-TELVRVEKDLE 183 (320)
T ss_dssp CCEEEEEEEEEEESSSTTSCCCTTCCGGGEEEEEEEEEECSSCTTCEEEEEEEECGGGCEEEEEEEEG-GGCCEEEECSS
T ss_pred cceEEEEEEEEecccCCCCCCCcccCccccCceEEEEEEecCCCceEEEEEEEecCCCceEecceech-hhhhhhhcccC
Confidence 56888888888832 367889999987654 322 2 3355899999999 79988873211
Q ss_pred CCCCCCcEEEEEeecCCCcccceeeechhhhHHHHHHHHhh
Q 000056 76 RDDNANEFNISVRTDGRGKFKAFKFSSRFRASILTELHRIR 116 (2526)
Q Consensus 76 ~~~~~~eF~i~~rk~~~~K~~~mkFss~~Ra~lLT~l~r~r 116 (2526)
.+.+|+|++.| ...=..-+...|.-.|..|.++.
T Consensus 184 ---~~~gF~LTl~K----~YyW~A~s~kER~~FI~sLvKiy 217 (320)
T 3a58_A 184 ---ISEGFILTMSK----KYYWETNSAKERTVFIKSLITLY 217 (320)
T ss_dssp ---CTTEEEEESSS----EEEEEESSHHHHHHHHHHHHHHH
T ss_pred ---CCCceEEEeCC----ceEEecCCHHHHHHHHHHHHHHH
Confidence 23799999843 22222334588888999999875
No 134
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=20.80 E-value=71 Score=42.54 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHH
Q 000056 1543 EKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYER 1577 (2526)
Q Consensus 1543 ~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEv 1577 (2526)
.+|+|+|||||+..++ .++++.-|..|+.|
T Consensus 646 ~~~~~ayr~la~~~~~-----~~~r~~lvd~a~~v 675 (681)
T 2pzi_A 646 LGVEASLRSLARVAPT-----QRHRYTLVDMANKV 675 (681)
T ss_dssp HHHHHHHHHHHHHCSS-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-----hHHHHHHHHHhccc
Confidence 4599999999997654 47889999888875
Done!