Query 000060
Match_columns 2472
No_of_seqs 299 out of 1425
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 15:57:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00121 MAEBL; Provisional 98.8 4.4E-08 9.6E-13 127.6 17.6 10 82-91 603-612 (2084)
2 PTZ00121 MAEBL; Provisional 98.8 7.8E-08 1.7E-12 125.4 17.8 9 318-326 832-840 (2084)
3 KOG1029 Endocytic adaptor prot 98.7 5.5E-07 1.2E-11 113.0 17.8 32 561-592 312-346 (1118)
4 PF07001 BAT2_N: BAT2 N-termin 98.6 1.9E-07 4.2E-12 104.3 9.5 73 8-119 16-88 (189)
5 KOG1029 Endocytic adaptor prot 98.5 1.5E-06 3.2E-11 109.4 15.8 57 600-656 361-417 (1118)
6 PTZ00266 NIMA-related protein 98.4 2.6E-06 5.6E-11 113.1 15.7 15 52-66 25-39 (1021)
7 PRK09510 tolA cell envelope in 98.3 2.7E-05 5.8E-10 95.1 18.9 7 552-558 68-74 (387)
8 PTZ00266 NIMA-related protein 98.3 7.4E-06 1.6E-10 108.9 15.0 13 850-863 691-703 (1021)
9 KOG4364 Chromatin assembly fac 98.2 2.5E-05 5.4E-10 98.1 16.9 20 1272-1291 750-769 (811)
10 COG3064 TolA Membrane protein 98.1 4.8E-05 1E-09 89.7 15.3 22 550-571 66-87 (387)
11 KOG4364 Chromatin assembly fac 98.1 5.6E-05 1.2E-09 95.1 16.1 8 1299-1306 745-752 (811)
12 KOG0163 Myosin class VI heavy 98.0 0.00016 3.6E-09 91.5 17.7 137 736-878 1066-1242(1259)
13 KOG2891 Surface glycoprotein [ 97.8 0.00065 1.4E-08 79.3 17.2 22 551-572 275-296 (445)
14 TIGR02794 tolA_full TolA prote 97.8 0.001 2.2E-08 80.9 19.6 7 884-890 323-329 (346)
15 COG3064 TolA Membrane protein 97.8 0.00057 1.2E-08 81.1 16.3 9 913-921 362-370 (387)
16 PF05262 Borrelia_P83: Borreli 97.7 0.00084 1.8E-08 84.4 17.0 9 368-376 10-18 (489)
17 KOG2072 Translation initiation 97.7 0.0094 2E-07 77.6 25.9 14 762-775 897-910 (988)
18 KOG0163 Myosin class VI heavy 97.6 0.00069 1.5E-08 86.2 14.8 19 607-625 935-953 (1259)
19 KOG4661 Hsp27-ERE-TATA-binding 97.6 0.002 4.4E-08 80.3 18.3 20 236-256 256-275 (940)
20 KOG4661 Hsp27-ERE-TATA-binding 97.5 0.011 2.5E-07 74.0 22.3 44 786-831 781-829 (940)
21 KOG2891 Surface glycoprotein [ 97.4 0.0075 1.6E-07 70.9 18.5 10 388-397 157-166 (445)
22 KOG1144 Translation initiation 97.3 0.00077 1.7E-08 86.4 10.6 11 1132-1142 730-740 (1064)
23 KOG2412 Nuclear-export-signal 97.2 0.011 2.4E-07 74.5 18.2 23 829-851 424-446 (591)
24 KOG2412 Nuclear-export-signal 97.1 0.01 2.3E-07 74.7 16.3 8 837-844 457-464 (591)
25 KOG2002 TPR-containing nuclear 97.0 0.012 2.5E-07 78.1 16.6 9 547-555 755-763 (1018)
26 PF12037 DUF3523: Domain of un 96.7 0.099 2.1E-06 62.6 19.5 8 536-543 25-32 (276)
27 KOG0742 AAA+-type ATPase [Post 96.5 0.25 5.3E-06 61.8 21.2 7 537-543 70-76 (630)
28 KOG3054 Uncharacterized conser 96.2 0.03 6.5E-07 65.4 10.7 14 756-769 244-257 (299)
29 KOG0742 AAA+-type ATPase [Post 95.5 0.36 7.7E-06 60.5 16.4 10 723-732 254-263 (630)
30 PF12037 DUF3523: Domain of un 95.3 0.87 1.9E-05 54.9 18.4 18 501-518 19-36 (276)
31 PF09726 Macoilin: Transmembra 95.3 0.48 1E-05 63.0 17.9 9 188-196 196-204 (697)
32 TIGR03319 YmdA_YtgF conserved 95.2 1.1 2.5E-05 57.8 20.2 6 780-785 249-254 (514)
33 PRK00106 hypothetical protein; 94.9 1.5 3.3E-05 57.0 20.2 6 780-785 270-275 (535)
34 PRK12704 phosphodiesterase; Pr 94.8 0.79 1.7E-05 59.3 17.5 6 780-785 255-260 (520)
35 KOG3654 Uncharacterized CH dom 94.6 0.17 3.6E-06 63.7 10.2 20 201-220 115-134 (708)
36 PRK12705 hypothetical protein; 92.8 3.6 7.9E-05 53.4 17.8 13 547-559 21-33 (508)
37 KOG1103 Predicted coiled-coil 92.4 1.1 2.3E-05 54.9 11.8 87 913-1011 399-491 (561)
38 COG4942 Membrane-bound metallo 91.8 6.1 0.00013 50.4 17.6 8 787-794 358-365 (420)
39 PRK00409 recombination and DNA 91.6 2.6 5.7E-05 57.0 15.3 11 278-288 223-233 (782)
40 PF02029 Caldesmon: Caldesmon; 91.5 0.52 1.1E-05 60.5 8.4 13 876-888 460-472 (492)
41 KOG4817 Unnamed protein [Funct 91.4 3 6.4E-05 51.9 14.0 75 8-120 15-89 (468)
42 KOG2507 Ubiquitin regulatory p 91.3 0.44 9.4E-06 59.7 7.2 12 858-869 422-433 (506)
43 TIGR01069 mutS2 MutS2 family p 91.0 4.8 0.0001 54.5 16.8 14 277-290 217-230 (771)
44 COG2268 Uncharacterized protei 91.0 7.1 0.00015 51.2 17.4 16 497-512 181-196 (548)
45 KOG1103 Predicted coiled-coil 90.1 5.6 0.00012 49.1 14.5 22 515-536 48-72 (561)
46 PRK12705 hypothetical protein; 90.0 6.7 0.00014 51.1 16.1 6 780-785 243-248 (508)
47 KOG4722 Zn-finger protein [Gen 89.8 9.7 0.00021 48.1 16.4 17 189-205 82-98 (672)
48 KOG2689 Predicted ubiquitin re 89.8 2.5 5.3E-05 51.1 11.2 15 798-812 249-263 (290)
49 KOG3634 Troponin [Cytoskeleton 88.4 7.8 0.00017 48.0 14.1 21 743-763 289-309 (361)
50 PF10147 CR6_interact: Growth 88.3 11 0.00024 44.7 14.9 15 529-543 63-78 (217)
51 KOG0579 Ste20-like serine/thre 88.2 16 0.00035 48.6 17.3 12 476-487 712-723 (1187)
52 KOG2507 Ubiquitin regulatory p 88.2 0.92 2E-05 57.0 6.6 6 907-912 464-469 (506)
53 PLN02316 synthase/transferase 88.0 5.2 0.00011 55.7 14.0 21 766-786 507-529 (1036)
54 KOG3654 Uncharacterized CH dom 87.9 3.1 6.7E-05 53.2 10.8 17 75-91 17-33 (708)
55 PLN02316 synthase/transferase 87.4 11 0.00025 52.6 16.6 9 267-275 120-128 (1036)
56 COG4372 Uncharacterized protei 87.2 39 0.00085 43.0 19.1 11 549-559 81-91 (499)
57 KOG1265 Phospholipase C [Lipid 87.0 30 0.00064 47.6 19.0 41 318-365 752-794 (1189)
58 PF05914 RIB43A: RIB43A; Inte 86.7 51 0.0011 42.0 20.3 7 537-543 142-148 (379)
59 PF09731 Mitofilin: Mitochondr 86.4 36 0.00079 44.6 19.6 16 318-333 26-41 (582)
60 PTZ00491 major vault protein; 86.0 18 0.00039 49.5 16.8 18 497-514 583-600 (850)
61 KOG3634 Troponin [Cytoskeleton 85.5 7.2 0.00016 48.3 11.8 23 761-785 287-309 (361)
62 KOG0579 Ste20-like serine/thre 85.3 22 0.00048 47.5 16.3 11 183-193 473-483 (1187)
63 KOG0994 Extracellular matrix g 85.1 17 0.00036 50.7 15.6 64 162-232 1193-1261(1758)
64 KOG0161 Myosin class II heavy 84.4 28 0.00061 51.5 18.5 9 185-193 302-310 (1930)
65 KOG1265 Phospholipase C [Lipid 84.0 30 0.00066 47.5 17.1 19 341-359 740-758 (1189)
66 PF09756 DDRGK: DDRGK domain; 83.8 0.33 7.2E-06 55.6 0.0 12 756-767 143-154 (188)
67 PTZ00491 major vault protein; 83.2 12 0.00026 51.1 13.4 11 150-160 198-208 (850)
68 PF10147 CR6_interact: Growth 83.2 64 0.0014 38.7 17.7 6 473-478 64-69 (217)
69 KOG0161 Myosin class II heavy 82.4 41 0.0009 50.0 18.8 11 253-263 454-464 (1930)
70 PF07227 DUF1423: Protein of u 82.3 22 0.00047 45.9 14.5 13 338-350 154-166 (446)
71 KOG4848 Extracellular matrix-a 82.3 44 0.00096 39.3 15.5 6 531-536 76-81 (225)
72 PRK13428 F0F1 ATP synthase sub 82.1 60 0.0013 42.0 18.5 11 837-847 254-264 (445)
73 KOG1363 Predicted regulator of 82.0 5.9 0.00013 51.0 9.7 9 501-509 205-213 (460)
74 PF05914 RIB43A: RIB43A; Inte 81.4 78 0.0017 40.5 18.8 13 512-524 131-143 (379)
75 KOG0982 Centrosomal protein Nu 81.4 51 0.0011 42.5 16.8 7 549-555 225-231 (502)
76 TIGR02680 conserved hypothetic 81.0 37 0.0008 49.1 17.7 7 349-355 33-39 (1353)
77 PRK12472 hypothetical protein; 80.5 20 0.00043 46.6 13.3 10 469-478 122-131 (508)
78 PRK13454 F0F1 ATP synthase sub 80.2 77 0.0017 36.4 16.7 12 531-542 16-27 (181)
79 PF06098 Radial_spoke_3: Radia 80.1 15 0.00033 45.1 11.8 14 336-349 3-16 (291)
80 PF06098 Radial_spoke_3: Radia 78.1 27 0.00059 43.1 13.1 11 582-592 142-152 (291)
81 PF04094 DUF390: Protein of un 77.8 68 0.0015 43.6 17.0 13 740-752 686-698 (828)
82 PF04094 DUF390: Protein of un 77.6 64 0.0014 43.8 16.7 12 546-557 439-450 (828)
83 PRK04863 mukB cell division pr 77.1 79 0.0017 46.5 18.9 12 1288-1299 830-841 (1486)
84 PRK04863 mukB cell division pr 76.9 73 0.0016 46.8 18.5 29 1090-1118 728-756 (1486)
85 KOG0933 Structural maintenance 76.8 1.1E+02 0.0023 43.2 18.8 51 504-559 632-684 (1174)
86 PRK12472 hypothetical protein; 75.4 47 0.001 43.5 14.4 7 746-752 368-374 (508)
87 KOG0971 Microtubule-associated 75.3 32 0.0007 47.2 13.4 33 308-352 46-79 (1243)
88 TIGR02169 SMC_prok_A chromosom 74.3 1.3E+02 0.0027 42.1 19.3 7 779-785 573-579 (1164)
89 KOG0996 Structural maintenance 74.3 48 0.001 46.9 14.9 11 885-895 688-698 (1293)
90 KOG4572 Predicted DNA-binding 74.0 63 0.0014 44.1 15.2 15 69-84 229-243 (1424)
91 KOG0288 WD40 repeat protein Ti 72.6 1.5E+02 0.0032 38.5 17.4 15 997-1011 383-397 (459)
92 KOG0612 Rho-associated, coiled 72.2 60 0.0013 46.2 15.1 15 469-484 389-403 (1317)
93 PF07888 CALCOCO1: Calcium bin 72.1 2.6E+02 0.0056 37.7 20.0 9 753-761 497-505 (546)
94 KOG3756 Pinin (desmosome-assoc 71.6 2.8E+02 0.0061 35.1 18.9 13 376-388 53-65 (340)
95 KOG2441 mRNA splicing factor/p 71.2 16 0.00036 46.1 9.0 11 753-763 412-422 (506)
96 PF10168 Nup88: Nuclear pore c 70.4 41 0.00088 45.9 13.1 11 81-91 83-93 (717)
97 KOG0249 LAR-interacting protei 70.4 1.1E+02 0.0024 41.7 16.2 12 912-923 440-451 (916)
98 KOG0288 WD40 repeat protein Ti 67.3 1.9E+02 0.0041 37.7 16.7 8 1004-1011 354-361 (459)
99 KOG0976 Rho/Rac1-interacting s 66.0 2.5E+02 0.0055 39.0 18.0 24 1061-1084 812-837 (1265)
100 KOG2894 Uncharacterized conser 65.9 97 0.0021 38.3 13.5 14 843-856 311-324 (331)
101 COG2433 Uncharacterized conser 65.8 91 0.002 41.9 14.2 12 539-550 339-350 (652)
102 KOG2129 Uncharacterized conser 65.5 1.8E+02 0.0038 37.9 16.0 18 871-888 478-495 (552)
103 PF05667 DUF812: Protein of un 65.1 2.8E+02 0.006 37.7 18.7 9 187-195 47-55 (594)
104 KOG3859 Septins (P-loop GTPase 65.1 97 0.0021 38.6 13.3 9 398-406 143-151 (406)
105 KOG2893 Zn finger protein [Gen 64.4 1.6E+02 0.0034 35.9 14.5 82 2223-2325 187-271 (341)
106 KOG2441 mRNA splicing factor/p 63.9 25 0.00054 44.6 8.5 9 447-455 189-197 (506)
107 KOG4403 Cell surface glycoprot 63.8 1.1E+02 0.0024 39.7 13.9 12 531-542 202-213 (575)
108 KOG0250 DNA repair protein RAD 63.7 2.7E+02 0.0059 39.9 18.5 29 431-459 553-581 (1074)
109 COG1196 Smc Chromosome segrega 63.0 2.4E+02 0.0053 40.6 18.8 10 916-925 645-654 (1163)
110 KOG0976 Rho/Rac1-interacting s 62.7 2.6E+02 0.0055 39.0 17.2 13 1534-1546 1197-1209(1265)
111 KOG0996 Structural maintenance 61.8 2.7E+02 0.0058 40.3 17.8 6 346-351 192-197 (1293)
112 PRK03918 chromosome segregatio 61.4 3.3E+02 0.0072 37.5 19.0 7 349-355 32-38 (880)
113 COG4499 Predicted membrane pro 60.4 20 0.00043 45.5 6.9 25 545-569 344-368 (434)
114 PF00901 Orbi_VP5: Orbivirus o 59.9 3.3E+02 0.0072 36.3 17.3 16 538-553 77-92 (508)
115 PF07227 DUF1423: Protein of u 59.6 1.1E+02 0.0023 40.1 13.0 6 479-484 262-267 (446)
116 KOG0249 LAR-interacting protei 59.3 2.7E+02 0.0059 38.4 16.7 12 1493-1504 823-834 (916)
117 KOG0345 ATP-dependent RNA heli 57.0 42 0.00091 43.9 9.0 7 310-316 171-177 (567)
118 KOG3915 Transcription regulato 56.8 74 0.0016 41.4 10.9 20 36-55 71-90 (641)
119 PF07111 HCR: Alpha helical co 55.9 5.7E+02 0.012 35.6 18.8 9 767-775 308-316 (739)
120 KOG4673 Transcription factor T 55.3 5.2E+02 0.011 35.8 18.1 10 551-560 448-457 (961)
121 KOG0612 Rho-associated, coiled 53.7 5E+02 0.011 38.0 18.4 11 268-279 332-342 (1317)
122 PLN03188 kinesin-12 family pro 51.9 5.6E+02 0.012 37.7 18.6 20 407-426 671-690 (1320)
123 COG1390 NtpE Archaeal/vacuolar 51.8 4.1E+02 0.0088 31.5 15.1 12 747-758 155-166 (194)
124 KOG0577 Serine/threonine prote 51.6 5.1E+02 0.011 35.7 17.1 15 261-275 210-224 (948)
125 KOG2505 Ankyrin repeat protein 51.3 58 0.0013 42.8 8.9 10 408-417 327-336 (591)
126 COG5269 ZUO1 Ribosome-associat 51.3 1.8E+02 0.004 36.0 12.5 12 271-282 16-27 (379)
127 KOG1425 Microfibrillar-associa 50.9 80 0.0017 40.1 9.8 13 304-316 51-63 (430)
128 KOG3598 Thyroid hormone recept 50.1 39 0.00084 48.4 7.6 12 376-387 1924-1935(2220)
129 KOG0250 DNA repair protein RAD 49.8 5.3E+02 0.012 37.3 17.8 16 404-419 85-100 (1074)
130 KOG3598 Thyroid hormone recept 49.7 34 0.00073 48.9 7.0 6 153-158 1772-1777(2220)
131 KOG0247 Kinesin-like protein [ 49.2 2.5E+02 0.0055 38.9 14.3 7 751-757 672-678 (809)
132 KOG1150 Predicted molecular ch 48.8 3E+02 0.0064 33.3 13.2 6 549-554 68-73 (250)
133 KOG4572 Predicted DNA-binding 48.8 4.6E+02 0.01 36.7 16.2 7 291-297 511-517 (1424)
134 COG0419 SbcC ATPase involved i 45.8 9.2E+02 0.02 34.2 19.6 7 349-355 34-40 (908)
135 KOG0345 ATP-dependent RNA heli 44.8 84 0.0018 41.3 8.9 14 374-387 350-363 (567)
136 PLN03188 kinesin-12 family pro 43.0 8.6E+02 0.019 36.0 18.3 12 70-81 65-76 (1320)
137 KOG0933 Structural maintenance 42.5 1.1E+03 0.024 34.2 18.8 17 769-785 1031-1048(1174)
138 PF15359 CDV3: Carnitine defic 41.8 63 0.0014 36.1 6.4 62 117-193 60-123 (129)
139 KOG2751 Beclin-like protein [S 41.0 4.4E+02 0.0096 34.7 14.1 24 827-850 373-398 (447)
140 PF03154 Atrophin-1: Atrophin- 40.9 15 0.00033 50.6 2.0 28 1109-1137 853-880 (982)
141 PF03154 Atrophin-1: Atrophin- 39.9 15 0.00034 50.5 1.8 8 829-837 700-707 (982)
142 KOG0971 Microtubule-associated 38.1 1.5E+03 0.032 32.8 18.8 14 1328-1341 1108-1121(1243)
143 KOG0804 Cytoplasmic Zn-finger 37.9 1.2E+03 0.025 31.4 17.3 10 376-385 235-244 (493)
144 PF12004 DUF3498: Domain of un 37.1 11 0.00024 49.0 0.0 8 379-386 236-243 (495)
145 COG5281 Phage-related minor ta 36.9 6.5E+02 0.014 35.7 15.6 11 178-188 42-52 (833)
146 KOG3878 Protein involved in ma 36.0 93 0.002 39.2 7.2 13 909-921 403-415 (469)
147 PF00901 Orbi_VP5: Orbivirus o 35.9 1.3E+03 0.028 31.3 17.8 9 839-847 400-408 (508)
148 PRK05035 electron transport co 34.3 88 0.0019 42.8 7.3 32 151-182 73-106 (695)
149 KOG2341 TATA box binding prote 34.3 1.5E+02 0.0032 39.9 9.0 7 85-91 10-16 (563)
150 KOG2505 Ankyrin repeat protein 33.4 1.7E+02 0.0038 38.8 9.2 9 489-497 305-313 (591)
151 KOG3878 Protein involved in ma 32.7 8.9E+02 0.019 31.2 14.5 7 537-543 86-92 (469)
152 KOG0979 Structural maintenance 32.5 1.1E+03 0.023 34.4 16.4 11 501-511 147-157 (1072)
153 KOG2341 TATA box binding prote 32.3 1.5E+02 0.0031 39.9 8.5 8 749-756 534-541 (563)
154 KOG2823 Cellular protein (glio 32.3 1.7E+02 0.0036 38.2 8.7 14 539-552 201-214 (438)
155 PRK10361 DNA recombination pro 32.0 1.4E+03 0.031 30.8 18.6 14 714-727 200-215 (475)
156 KOG3973 Uncharacterized conser 31.4 77 0.0017 40.1 5.6 57 71-127 310-393 (465)
157 PF07767 Nop53: Nop53 (60S rib 31.3 2.5E+02 0.0054 35.7 10.1 15 539-553 186-200 (387)
158 KOG4715 SWI/SNF-related matrix 31.2 1.6E+02 0.0036 37.0 8.1 12 279-290 25-36 (410)
159 KOG0338 ATP-dependent RNA heli 30.8 2.8E+02 0.0061 37.3 10.4 6 412-417 357-362 (691)
160 KOG4715 SWI/SNF-related matrix 29.9 2.1E+02 0.0046 36.1 8.7 17 482-500 131-147 (410)
161 KOG0923 mRNA splicing factor A 29.4 1.1E+02 0.0025 41.6 6.9 7 1317-1323 466-472 (902)
162 PRK05035 electron transport co 29.2 82 0.0018 43.1 5.8 14 545-558 425-438 (695)
163 KOG0247 Kinesin-like protein [ 29.1 9.3E+02 0.02 33.9 14.8 6 354-359 328-333 (809)
164 KOG4643 Uncharacterized coiled 28.1 2.2E+03 0.047 31.7 18.7 27 1355-1381 1108-1134(1195)
165 PRK10246 exonuclease subunit S 27.4 2E+03 0.044 31.6 18.6 7 349-355 39-45 (1047)
166 KOG3973 Uncharacterized conser 27.4 43 0.00092 42.2 2.6 20 36-55 441-460 (465)
167 KOG2962 Prohibitin-related mem 27.3 1.1E+03 0.025 29.1 13.7 7 478-484 35-41 (322)
168 KOG0243 Kinesin-like protein [ 27.0 2E+03 0.043 32.0 17.8 47 327-376 159-206 (1041)
169 KOG1832 HIV-1 Vpr-binding prot 26.5 43 0.00092 46.2 2.5 26 1101-1126 1426-1451(1516)
170 PF04615 Utp14: Utp14 protein; 25.7 3.6E+02 0.0077 37.2 10.7 48 1099-1146 584-633 (735)
171 PRK10361 DNA recombination pro 25.6 1.8E+03 0.039 29.9 19.5 7 832-838 260-266 (475)
172 COG4499 Predicted membrane pro 25.2 1.3E+02 0.0028 38.8 6.1 11 323-333 26-36 (434)
173 KOG0963 Transcription factor/C 25.0 2E+03 0.044 30.3 18.5 8 537-544 97-104 (629)
174 KOG2963 RNA-binding protein re 24.4 2E+02 0.0044 36.7 7.4 14 274-288 128-141 (405)
175 PRK08404 V-type ATP synthase s 22.6 9.9E+02 0.022 25.8 13.8 90 604-693 2-91 (103)
176 TIGR00606 rad50 rad50. This fa 22.6 2.7E+03 0.057 31.2 18.7 135 573-707 825-959 (1311)
177 KOG0388 SNF2 family DNA-depend 22.5 1.2E+02 0.0027 41.5 5.4 16 116-131 72-87 (1185)
178 KOG0999 Microtubule-associated 21.9 2.2E+03 0.048 29.7 15.9 29 1083-1113 425-453 (772)
179 TIGR03185 DNA_S_dndD DNA sulfu 21.8 1.2E+03 0.027 31.7 14.4 20 349-368 37-56 (650)
180 PRK10929 putative mechanosensi 21.3 2.3E+03 0.05 31.7 17.2 16 1658-1673 1063-1078(1109)
181 KOG0923 mRNA splicing factor A 21.2 3.5E+02 0.0077 37.4 9.0 27 1280-1306 599-632 (902)
182 KOG0977 Nuclear envelope prote 21.1 2.3E+03 0.049 29.5 17.3 14 1007-1020 503-516 (546)
183 KOG2077 JNK/SAPK-associated pr 21.1 8.2E+02 0.018 33.4 11.9 12 833-844 515-526 (832)
184 KOG3088 Secretory carrier memb 21.0 1.2E+02 0.0026 37.9 4.6 30 641-670 63-92 (313)
185 PF15556 Zwint: ZW10 interacto 21.0 1.6E+03 0.034 27.6 18.8 7 537-543 45-51 (252)
186 PF04615 Utp14: Utp14 protein; 20.9 8.9E+02 0.019 33.6 13.0 7 1132-1138 596-602 (735)
187 PF05278 PEARLI-4: Arabidopsis 20.9 9.6E+02 0.021 30.2 11.9 75 618-692 172-246 (269)
188 KOG2457 A/G-specific adenine D 20.8 49 0.0011 42.2 1.4 34 1202-1235 490-523 (555)
189 PF07415 Herpes_LMP2: Gammaher 20.8 34 0.00073 43.0 0.1 41 93-133 14-54 (489)
190 PLN02372 violaxanthin de-epoxi 20.7 1.1E+03 0.024 31.4 12.6 7 381-387 243-249 (455)
191 PRK10929 putative mechanosensi 20.3 2.8E+03 0.062 30.8 17.7 6 1110-1115 770-775 (1109)
192 PRK13203 ureB urease subunit b 20.1 39 0.00084 36.5 0.3 14 2078-2091 37-50 (102)
No 1
>PTZ00121 MAEBL; Provisional
Probab=98.85 E-value=4.4e-08 Score=127.60 Aligned_cols=10 Identities=50% Similarity=0.610 Sum_probs=6.4
Q ss_pred cccccccccC
Q 000060 82 SLRKEHERFD 91 (2472)
Q Consensus 82 slrkehe~~d 91 (2472)
---+.-+|||
T Consensus 603 pq~~~m~rfd 612 (2084)
T PTZ00121 603 PQQKFMERFD 612 (2084)
T ss_pred cHHHHHHhcC
Confidence 3456677777
No 2
>PTZ00121 MAEBL; Provisional
Probab=98.81 E-value=7.8e-08 Score=125.42 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=5.0
Q ss_pred ccccCCCCC
Q 000060 318 AYWEGDFDM 326 (2472)
Q Consensus 318 ~~w~~~fd~ 326 (2472)
+.|+.+|+-
T Consensus 832 pC~e~~~~N 840 (2084)
T PTZ00121 832 PCLEGSFGN 840 (2084)
T ss_pred ccCCCCCCc
Confidence 556665553
No 3
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=5.5e-07 Score=113.04 Aligned_cols=32 Identities=44% Similarity=0.630 Sum_probs=18.9
Q ss_pred cccCCchhhHHH---HHHHHHHHHHHHHHHHHHHH
Q 000060 561 TDFHDPVRESFE---AELERVQKMQEQERQRIIEE 592 (2472)
Q Consensus 561 ~E~EDklREEaE---aELERrrEeeEEEReReEEE 592 (2472)
..|||++++..+ +|++++++..+++++|++++
T Consensus 312 ~TFEDKrkeNy~kGqaELerRRq~leeqqqreree 346 (1118)
T KOG1029|consen 312 VTFEDKRKENYEKGQAELERRRQALEEQQQREREE 346 (1118)
T ss_pred cchhhhhHHhHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 356666666665 77776666655554444333
No 4
>PF07001 BAT2_N: BAT2 N-terminus; InterPro: IPR009738 This entry represents the N terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin [].
Probab=98.56 E-value=1.9e-07 Score=104.28 Aligned_cols=73 Identities=33% Similarity=0.535 Sum_probs=50.5
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeeccCccccccCCccccCCCCCCCcccccc
Q 000060 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (2472)
Q Consensus 8 ~k~~svnln~~yg~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~gggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh 87 (2472)
.||.++|||..|--.+.-- + -....-..||.+|++= +.. --||||.||||||.||
T Consensus 16 ~Ky~~l~in~~YkGks~e~---------q---------k~~~~~~hGmqsLGKv------~~a-RRmPpPaNLPSLKaEn 70 (189)
T PF07001_consen 16 PKYSSLNINSLYKGKSLEP---------Q---------KSTVPRRHGMQSLGKV------PSA-RRMPPPANLPSLKAEN 70 (189)
T ss_pred ccceeechhhhhcCCcccc---------c---------cCCccCCCcceecccc------ccc-ccCCCCCCCcchhhhc
Confidence 3899999999993333210 1 1122236799999982 111 1289999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000060 88 ERFDSSGSNGGPAGGGVSGAGQRPGSSGTGWT 119 (2472)
Q Consensus 88 e~~ds~g~~~g~~~~~~~g~g~rp~ssg~gwt 119 (2472)
.++| |+...|+.. |.||+
T Consensus 71 ~GnD-------pnv~lVP~~-------GsGWa 88 (189)
T PF07001_consen 71 KGND-------PNVSLVPKG-------GSGWA 88 (189)
T ss_pred cCCC-------CCceeecCC-------CcCcc
Confidence 9999 776655543 46998
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=1.5e-06 Score=109.44 Aligned_cols=57 Identities=33% Similarity=0.402 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000060 600 ARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQR 656 (2472)
Q Consensus 600 aRKEEEEReReaREEEERRRReEEEeRErerREEKERlEAERKEEEERKRrEEEErR 656 (2472)
++.++|++.+++.+++-+|+|+-|.++|+++++|.+++|++|++.|+.++.|=|+.|
T Consensus 361 erqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRqlewErar 417 (1118)
T KOG1029|consen 361 ERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQLEWERAR 417 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344333444444444444445555555566666666665555544433334333
No 6
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.41 E-value=2.6e-06 Score=113.09 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=8.9
Q ss_pred CCceEEeeccCcccc
Q 000060 52 GGGMLVLSRPRSSQK 66 (2472)
Q Consensus 52 gggm~vlsr~r~~~~ 66 (2472)
+=|.|.|.+.+....
T Consensus 25 gFGtVYLAkdk~tg~ 39 (1021)
T PTZ00266 25 RFGEVFLVKHKRTQE 39 (1021)
T ss_pred CCeEEEEEEECCCCe
Confidence 345677777665543
No 7
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=98.28 E-value=2.7e-05 Score=95.07 Aligned_cols=7 Identities=0% Similarity=0.207 Sum_probs=2.5
Q ss_pred hhhhhhh
Q 000060 552 KKKKDVL 558 (2472)
Q Consensus 552 KKKKEea 558 (2472)
+.++...
T Consensus 68 q~q~~~~ 74 (387)
T PRK09510 68 QQQQKSA 74 (387)
T ss_pred HHhHHhH
Confidence 3333333
No 8
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.27 E-value=7.4e-06 Score=108.92 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=8.3
Q ss_pred CCCcCCcccccccc
Q 000060 850 GDHYGRNIEMESDF 863 (2472)
Q Consensus 850 ~Dt~gr~~e~dsdf 863 (2472)
+|+|+|+ +|+.=+
T Consensus 691 ~~~~~~~-~~~~~~ 703 (1021)
T PTZ00266 691 QDTFDRN-DMHGYM 703 (1021)
T ss_pred ccccchh-hhhHHh
Confidence 6778877 555533
No 9
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.22 E-value=2.5e-05 Score=98.12 Aligned_cols=20 Identities=30% Similarity=0.200 Sum_probs=10.5
Q ss_pred CCCcceEEEeecccCCCCCC
Q 000060 1272 QAETPVKLQFGLFSGPSLIP 1291 (2472)
Q Consensus 1272 ~~E~pv~LqFGlfsGpsLip 1291 (2472)
++.++|+-|+-.--|++--|
T Consensus 750 ~~~lqv~~qw~y~l~~~~sp 769 (811)
T KOG4364|consen 750 DSRLQVKKQWLYKLGLSPSP 769 (811)
T ss_pred cccccccceeeeeecCCCCC
Confidence 34566666665555544333
No 10
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=98.10 E-value=4.8e-05 Score=89.72 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=9.9
Q ss_pred HHhhhhhhhcccccCCchhhHH
Q 000060 550 VVKKKKDVLKQTDFHDPVRESF 571 (2472)
Q Consensus 550 lVKKKKEeaKq~E~EDklREEa 571 (2472)
.++.+++.+++.+.+++.+.+.
T Consensus 66 r~q~Q~~~akk~e~~r~kk~e~ 87 (387)
T COG3064 66 RIQSQQSSAKKGEQQRKKKEEQ 87 (387)
T ss_pred HHHHHHHHHhhhHHHHHhhhHH
Confidence 4445544445444444444333
No 11
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.08 E-value=5.6e-05 Score=95.07 Aligned_cols=8 Identities=13% Similarity=0.111 Sum_probs=3.9
Q ss_pred eccccCcc
Q 000060 1299 IGSIQMPL 1306 (2472)
Q Consensus 1299 IGSIQmPl 1306 (2472)
|-+.|.|=
T Consensus 745 l~~Fq~~~ 752 (811)
T KOG4364|consen 745 LSDFQDSR 752 (811)
T ss_pred HHhccccc
Confidence 44555553
No 12
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=97.99 E-value=0.00016 Score=91.52 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=66.7
Q ss_pred CCCCCCcccCCCCcccccCCCCC------CcccCCCCcCcCcccccCCCC-------cc----c--cccc-cccCCCCCC
Q 000060 736 DSSGLHRSFDMSSRNQFARDNSS------GFLDRGKPFNSWRRDAFESGN-------SS----T--FITQ-DAENGHYSP 795 (2472)
Q Consensus 736 DSSS~eR~~emg~RvhtSRd~sS------s~LdR~KPinSWrR~~fl~q~-------sS----~--F~Pq-~~EN~~~sP 795 (2472)
|.+.|.=. ++-+.++||-|.+- -|..|.|.|+.|+....-+.. .+ . |+-+ -+-+.+.-|
T Consensus 1066 Dl~~wkya-eLRDtINTS~DieLL~ACreEFhRRLkvY~~WKskN~~~~~~~~~RAp~sv~~~~f~~~~~~~~~~P~~~~ 1144 (1259)
T KOG0163|consen 1066 DLSKWKYA-ELRDTINTSCDIELLEACREEFHRRLKVYHAWKSKNRKRTTMPENRAPLSVMEAAFKFLNQRPQAQPIAEI 1144 (1259)
T ss_pred ccccccHH-HHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCccccchhHHHHHHhhhcCCcccCccccc
Confidence 44444322 45556677777653 467888899999866544332 11 1 1100 011111111
Q ss_pred C-CCCCCCCCCCCCcCCC----CCCC--cccccCCCCCcccccchhhccccccCccccCCC-------------CCCcCC
Q 000060 796 R-RDSAFGGRAVPRKEFY----GGPG--IMSSRNYYKAGILEPHMDEFTVSRGQRWNMSGD-------------GDHYGR 855 (2472)
Q Consensus 796 r-rDs~fG~rspprK~f~----gG~G--fvsK~sY~ggG~tD~~LeDYr~~~p~rWnipGD-------------~Dt~gr 855 (2472)
- +--.|=..+|.+++.. ...| |++-+ |...- -..++|-++|+..=+-|- +.+--|
T Consensus 1145 ~~~qqRyFri~F~~dn~k~p~~~k~gmWyaHFd----Gq~I~-RQm~l~~~kpP~lLvAGkDDmqMCeL~LeeTgL~rKr 1219 (1259)
T KOG0163|consen 1145 VTAQQRYFRIPFMRDNAKAPDNTKRGMWYAHFD----GQWIA-RQMELHPDKPPILLVAGKDDMQMCELSLEETGLTRKR 1219 (1259)
T ss_pred hhhhhheeecceecccccCCCCCccceEEEecC----cHHHH-hhheecCCCCCeEEEecCchHHHhcchhHhhcccccc
Confidence 0 1122334455554333 3334 44322 11111 123445555554444443 344566
Q ss_pred ccccccccccccccccCCccccc
Q 000060 856 NIEMESDFHENITERYGDVGWGQ 878 (2472)
Q Consensus 856 ~~e~dsdf~en~~er~gD~gW~~ 878 (2472)
-.||-++=||.+-+|+|.-.+.+
T Consensus 1220 GAEI~~~eFe~~W~r~Ggk~~~~ 1242 (1259)
T KOG0163|consen 1220 GAEILEHEFEREWERNGGKAYKN 1242 (1259)
T ss_pred ccccChHHHHHHHHHhCcHHhHh
Confidence 67787777787778888766665
No 13
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.80 E-value=0.00065 Score=79.26 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=11.0
Q ss_pred HhhhhhhhcccccCCchhhHHH
Q 000060 551 VKKKKDVLKQTDFHDPVRESFE 572 (2472)
Q Consensus 551 VKKKKEeaKq~E~EDklREEaE 572 (2472)
|.|+.++.++++-++..++++|
T Consensus 275 iakraeerrqieterlrqeeee 296 (445)
T KOG2891|consen 275 IAKRAEERRQIETERLRQEEEE 296 (445)
T ss_pred HHHHHHHHhhhhHHHHhhhHhh
Confidence 3455555555555544444444
No 14
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=97.80 E-value=0.001 Score=80.88 Aligned_cols=7 Identities=29% Similarity=0.277 Sum_probs=3.0
Q ss_pred CCCCCCC
Q 000060 884 NVHPPYP 890 (2472)
Q Consensus 884 ~p~pP~~ 890 (2472)
.|+|+|+
T Consensus 323 ~p~P~Pp 329 (346)
T TIGR02794 323 AKLPMPP 329 (346)
T ss_pred CCCCCCC
Confidence 3444443
No 15
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=97.77 E-value=0.00057 Score=81.05 Aligned_cols=9 Identities=22% Similarity=0.770 Sum_probs=3.6
Q ss_pred CCCCCCCCC
Q 000060 913 RHPRVLPPP 921 (2472)
Q Consensus 913 RqPRVlPPP 921 (2472)
|+-.||+||
T Consensus 362 k~~kiP~pp 370 (387)
T COG3064 362 KTAKIPKPP 370 (387)
T ss_pred HhccCCCCC
Confidence 333344433
No 16
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=97.68 E-value=0.00084 Score=84.43 Aligned_cols=9 Identities=22% Similarity=0.202 Sum_probs=3.9
Q ss_pred cccCCCcCC
Q 000060 368 DIRAPSREG 376 (2472)
Q Consensus 368 d~~~~~reg 376 (2472)
+|+.-|++|
T Consensus 10 ~i~F~Ny~g 18 (489)
T PF05262_consen 10 TIEFINYSG 18 (489)
T ss_pred ceEEEecCC
Confidence 344444444
No 17
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.0094 Score=77.56 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=9.8
Q ss_pred cCCCCcCcCccccc
Q 000060 762 DRGKPFNSWRRDAF 775 (2472)
Q Consensus 762 dR~KPinSWrR~~f 775 (2472)
.|+-+.+.|+|...
T Consensus 897 ~~a~~~~~WrR~a~ 910 (988)
T KOG2072|consen 897 PRAPEEAEWRRGAG 910 (988)
T ss_pred CCCCcchHHhhccC
Confidence 45557788988873
No 18
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=97.62 E-value=0.00069 Score=86.20 Aligned_cols=19 Identities=58% Similarity=0.667 Sum_probs=8.8
Q ss_pred HHhhhHHHHHHHHHHHHHH
Q 000060 607 RLRVAREQEEQRRRLEEET 625 (2472)
Q Consensus 607 ReReaREEEERRRReEEEe 625 (2472)
.+|+++|+||++++++||.
T Consensus 935 ~ER~rrEaeek~rre~ee~ 953 (1259)
T KOG0163|consen 935 AERKRREAEEKRRREEEEK 953 (1259)
T ss_pred HHHHhhhhhHHHHHHHHHH
Confidence 3344445555544444443
No 19
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.61 E-value=0.002 Score=80.25 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=13.3
Q ss_pred CCcccccCCCcccCCccccCC
Q 000060 236 GMSPRLQSGQDVVGSRLRENG 256 (2472)
Q Consensus 236 ~mrpq~q~~~~~~g~~~~~~~ 256 (2472)
-..|-+.+-+.+.|.+ ++++
T Consensus 256 eeedlfdSahpeegDl-Dlas 275 (940)
T KOG4661|consen 256 EEEDLFDSAHPEEGDL-DLAS 275 (940)
T ss_pred hccccccccCCccccc-cccc
Confidence 3556677778888776 5544
No 20
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.48 E-value=0.011 Score=74.00 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=25.6
Q ss_pred ccccCCCCCCCCCCCCCCCCCC---CcCCCCCCC--cccccCCCCCccccc
Q 000060 786 QDAENGHYSPRRDSAFGGRAVP---RKEFYGGPG--IMSSRNYYKAGILEP 831 (2472)
Q Consensus 786 q~~EN~~~sPrrDs~fG~rspp---rK~f~gG~G--fvsK~sY~ggG~tD~ 831 (2472)
.|+--+.|-| ++-.+|-+++ +.++.+||| |+.|++..|.|+.-+
T Consensus 781 gd~regqHyp--~~~~~hGGp~erHgrdsrdGwgGygsdKr~seGrGlppp 829 (940)
T KOG4661|consen 781 GDYREGQHYP--LSGTVHGGPSERHGRDSRDGWGGYGSDKRNSEGRGLPPP 829 (940)
T ss_pred ccchhhcccC--ccCccCCCchhhccCccCCCcccccccccccCCCCCCCC
Confidence 4555554444 2334444443 366777776 889998766665543
No 21
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.41 E-value=0.0075 Score=70.85 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=4.4
Q ss_pred cccCCCcccc
Q 000060 388 LQKDGFGALD 397 (2472)
Q Consensus 388 l~k~w~~aqd 397 (2472)
|+--||.-.+
T Consensus 157 ip~kwf~lke 166 (445)
T KOG2891|consen 157 IPCKWFALKE 166 (445)
T ss_pred Ccceeeeecc
Confidence 3344555433
No 22
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.00077 Score=86.41 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=4.6
Q ss_pred cceecccccce
Q 000060 1132 SNLVLGFNEGV 1142 (2472)
Q Consensus 1132 ~~~vlgf~egv 1142 (2472)
|-+|||=-.|-
T Consensus 730 D~IvvcG~~Gp 740 (1064)
T KOG1144|consen 730 DQIVVCGLQGP 740 (1064)
T ss_pred CEEEEcCCCCc
Confidence 45444433343
No 23
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=97.21 E-value=0.011 Score=74.49 Aligned_cols=23 Identities=0% Similarity=-0.272 Sum_probs=15.1
Q ss_pred cccchhhccccccCccccCCCCC
Q 000060 829 LEPHMDEFTVSRGQRWNMSGDGD 851 (2472)
Q Consensus 829 tD~~LeDYr~~~p~rWnipGD~D 851 (2472)
-|..|+.++..||=.=.++.+.+
T Consensus 424 ~dlllA~l~KkCP~~VPf~~~~~ 446 (591)
T KOG2412|consen 424 GDLLLARLHKKCPYVVPFHIVNS 446 (591)
T ss_pred HHHHHHHHHhcCCccccccccCc
Confidence 34467777888876666666554
No 24
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=97.09 E-value=0.01 Score=74.73 Aligned_cols=8 Identities=13% Similarity=0.609 Sum_probs=3.3
Q ss_pred cccccCcc
Q 000060 837 TVSRGQRW 844 (2472)
Q Consensus 837 r~~~p~rW 844 (2472)
+......|
T Consensus 457 k~~d~nk~ 464 (591)
T KOG2412|consen 457 KAWDSNKW 464 (591)
T ss_pred cccccccc
Confidence 33334444
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.012 Score=78.08 Aligned_cols=9 Identities=33% Similarity=0.250 Sum_probs=3.7
Q ss_pred hhhHHhhhh
Q 000060 547 LVGVVKKKK 555 (2472)
Q Consensus 547 mialVKKKK 555 (2472)
+++++-++.
T Consensus 755 N~a~v~kkl 763 (1018)
T KOG2002|consen 755 NLALVLKKL 763 (1018)
T ss_pred HHHHHHHHH
Confidence 344444443
No 26
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=96.71 E-value=0.099 Score=62.58 Aligned_cols=8 Identities=38% Similarity=0.480 Sum_probs=5.2
Q ss_pred CCCCCCCc
Q 000060 536 SFDGRDPF 543 (2472)
Q Consensus 536 g~dGrDP~ 543 (2472)
...||||.
T Consensus 25 ~~~~FDP~ 32 (276)
T PF12037_consen 25 TASGFDPE 32 (276)
T ss_pred ccCCCCcH
Confidence 34577776
No 27
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.25 Score=61.79 Aligned_cols=7 Identities=43% Similarity=0.757 Sum_probs=4.9
Q ss_pred CCCCCCc
Q 000060 537 FDGRDPF 543 (2472)
Q Consensus 537 ~dGrDP~ 543 (2472)
..|+||.
T Consensus 70 ~~gFDpe 76 (630)
T KOG0742|consen 70 WSGFDPE 76 (630)
T ss_pred ccCCChH
Confidence 4578886
No 28
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.03 Score=65.43 Aligned_cols=14 Identities=29% Similarity=0.155 Sum_probs=8.9
Q ss_pred CCCCcccCCCCcCc
Q 000060 756 NSSGFLDRGKPFNS 769 (2472)
Q Consensus 756 ~sSs~LdR~KPinS 769 (2472)
+.-+.-||+|+|-.
T Consensus 244 ltGVmDDRGKfIYI 257 (299)
T KOG3054|consen 244 LTGVMDDRGKFIYI 257 (299)
T ss_pred heeeecCCCceEEe
Confidence 44556688887644
No 29
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.36 Score=60.46 Aligned_cols=10 Identities=40% Similarity=0.620 Sum_probs=4.8
Q ss_pred cccccccccc
Q 000060 723 ERMVERITTS 732 (2472)
Q Consensus 723 ERmvDrItTS 732 (2472)
++.++.|+|.
T Consensus 254 ekwl~aInTt 263 (630)
T KOG0742|consen 254 EKWLEAINTT 263 (630)
T ss_pred HHHHHHHhhh
Confidence 3445555544
No 30
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=95.30 E-value=0.87 Score=54.95 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCCcccc
Q 000060 501 PHNDPMHNFSRDKRPLLK 518 (2472)
Q Consensus 501 L~NdpllNFgRDKR~~~k 518 (2472)
..++....++|||-.+..
T Consensus 19 ~~~~~~~~~~FDP~aLER 36 (276)
T PF12037_consen 19 NDNPRTTASGFDPEALER 36 (276)
T ss_pred CCCCCcccCCCCcHHHHH
Confidence 344445567788766664
No 31
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.29 E-value=0.48 Score=63.00 Aligned_cols=9 Identities=56% Similarity=0.693 Sum_probs=5.1
Q ss_pred cccccccCC
Q 000060 188 SLQAALPAA 196 (2472)
Q Consensus 188 sl~a~lp~~ 196 (2472)
.|+-|||+.
T Consensus 196 ~l~~~lp~~ 204 (697)
T PF09726_consen 196 LLQQALPPE 204 (697)
T ss_pred HHHHhCCCc
Confidence 455666554
No 32
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.17 E-value=1.1 Score=57.77 Aligned_cols=6 Identities=33% Similarity=0.130 Sum_probs=3.9
Q ss_pred cccccc
Q 000060 780 SSTFIT 785 (2472)
Q Consensus 780 sS~F~P 785 (2472)
.|+|-|
T Consensus 249 ls~fdp 254 (514)
T TIGR03319 249 LSGFDP 254 (514)
T ss_pred ecCCch
Confidence 666765
No 33
>PRK00106 hypothetical protein; Provisional
Probab=94.90 E-value=1.5 Score=57.00 Aligned_cols=6 Identities=33% Similarity=0.130 Sum_probs=3.8
Q ss_pred cccccc
Q 000060 780 SSTFIT 785 (2472)
Q Consensus 780 sS~F~P 785 (2472)
.|+|-|
T Consensus 270 lS~fdp 275 (535)
T PRK00106 270 LSGFDP 275 (535)
T ss_pred EeCCCh
Confidence 666765
No 34
>PRK12704 phosphodiesterase; Provisional
Probab=94.82 E-value=0.79 Score=59.27 Aligned_cols=6 Identities=33% Similarity=0.130 Sum_probs=2.9
Q ss_pred cccccc
Q 000060 780 SSTFIT 785 (2472)
Q Consensus 780 sS~F~P 785 (2472)
.|+|.|
T Consensus 255 ls~~~~ 260 (520)
T PRK12704 255 LSGFDP 260 (520)
T ss_pred EecCCh
Confidence 455544
No 35
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=94.55 E-value=0.17 Score=63.74 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=13.2
Q ss_pred hhhcccchhHhhhccccccc
Q 000060 201 KKQKDGFSQKQKQGMSQELG 220 (2472)
Q Consensus 201 ~k~k~~~~qk~kq~~~~~~~ 220 (2472)
||.-+.|.-||+|.|+.--+
T Consensus 115 kkkmea~fakqrqklgksaf 134 (708)
T KOG3654|consen 115 KKKMEAIFAKQRQKLGKSAF 134 (708)
T ss_pred HHHHHHHHHHHHHHhchhhe
Confidence 34455666788888776655
No 36
>PRK12705 hypothetical protein; Provisional
Probab=92.75 E-value=3.6 Score=53.41 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=6.7
Q ss_pred hhhHHhhhhhhhc
Q 000060 547 LVGVVKKKKDVLK 559 (2472)
Q Consensus 547 mialVKKKKEeaK 559 (2472)
++..++++....+
T Consensus 21 ~~~~~~~~~~~~~ 33 (508)
T PRK12705 21 LVVLLKKRQRLAK 33 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554444
No 37
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=92.40 E-value=1.1 Score=54.93 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=42.2
Q ss_pred CCCCCCCCCccccccCCCCCCCcCC---CCCCccccccccc---ccccccccccccccccccccccCCCcccccCCCCch
Q 000060 913 RHPRVLPPPTLTSMQKPSYRRENEC---PSPSTFQENEVEY---NRLLRSESISLAGLDRSEQHNLAQPEIIDVQPESTE 986 (2472)
Q Consensus 913 RqPRVlPPP~~~s~~r~s~~~~~~~---p~pstf~~~~~~~---~~~~r~e~~~~~~y~~~~~~~~~~~~~i~~~~~~a~ 986 (2472)
+-||-++||+.+.+-++ ..|++-. |+-|+....-+-- -.-.-.-+..-++|.++||+...|-- +|
T Consensus 399 gcP~~ie~~VpmPsPl~-S~GsslspS~~ASSSlt~~pcSSPV~~k~llGssaSSp~~qssyqvginqrf-------ha- 469 (561)
T KOG1103|consen 399 GCPRAIEPAVPMPSPLM-SIGSSLSPSLPASSSLTPRPCSSPVKKKPLLGSSASSPAVQSSYQVGINQRF-------HA- 469 (561)
T ss_pred CCCCCCCCCCCCCCccc-ccccccCCCCcccccCCCCCCCCccccccccccccCChhhhhhhhhcchhhh-------hh-
Confidence 56888888888887773 3444332 2222222111100 00000113345678888885444322 11
Q ss_pred hhhccccccccCccCCCcccccccC
Q 000060 987 NEEQNLERSTTSRCDSQSSLSVSSA 1011 (2472)
Q Consensus 987 ~E~q~~dr~~t~~~dsQsSLSvssp 1011 (2472)
--|++- ++.-.|-|+|.-.|+|
T Consensus 470 -aRhkf~--aqad~dqqasgl~sp~ 491 (561)
T KOG1103|consen 470 -ARHKFA--AQADMDQQASGLNSPA 491 (561)
T ss_pred -ccchhh--hcccCcccccccCCCc
Confidence 123333 4566677777666554
No 38
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.78 E-value=6.1 Score=50.38 Aligned_cols=8 Identities=38% Similarity=0.331 Sum_probs=3.5
Q ss_pred cccCCCCC
Q 000060 787 DAENGHYS 794 (2472)
Q Consensus 787 ~~EN~~~s 794 (2472)
|++|+.++
T Consensus 358 dhG~gy~s 365 (420)
T COG4942 358 DHGGGYHS 365 (420)
T ss_pred EcCCccEE
Confidence 44444433
No 39
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=91.56 E-value=2.6 Score=56.98 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=4.5
Q ss_pred CCCCCCeeecc
Q 000060 278 FPGPLPLVRLK 288 (2472)
Q Consensus 278 ~~gplplvrl~ 288 (2472)
|.-|..+|-|+
T Consensus 223 y~ep~~~~~ln 233 (782)
T PRK00409 223 YIEPQSVVELN 233 (782)
T ss_pred EEEcHHHHHHH
Confidence 33344444443
No 40
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=91.47 E-value=0.52 Score=60.45 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=6.4
Q ss_pred cccCCCCCCCCCC
Q 000060 876 WGQGRYRGNVHPP 888 (2472)
Q Consensus 876 W~~s~s~g~p~pP 888 (2472)
|+...+.++..|.
T Consensus 460 w~~~~~e~~~~~~ 472 (492)
T PF02029_consen 460 WLTKTPEGSKSPA 472 (492)
T ss_pred hhcCCCCCCCCCC
Confidence 5555555544433
No 41
>KOG4817 consensus Unnamed protein [Function unknown]
Probab=91.39 E-value=3 Score=51.87 Aligned_cols=75 Identities=36% Similarity=0.509 Sum_probs=47.1
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeeccCccccccCCccccCCCCCCCcccccc
Q 000060 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (2472)
Q Consensus 8 ~k~~svnln~~yg~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~gggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh 87 (2472)
.||--|-||..|--.- .-.+- ..-..-+-||-.|.+ + ..---.|||-||||||-|-
T Consensus 15 ~K~talsin~~ykg~~-----------~~~aq------R~~vp~RhGmQslGK------a-~v~rrmpPPAnLPSLkaEn 70 (468)
T KOG4817|consen 15 PKFTALSINRMYKGSR-----------EPSAQ------RNQVPRRHGMQSLGK------A-KVPRRMPPPANLPSLKAEN 70 (468)
T ss_pred cCcceeehhhhhcCCc-----------CCccc------ccCCCccchhhhhcc------c-cccccCCCCCCCcchhhcc
Confidence 5888888888884331 10000 112233678877764 1 2223579999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000060 88 ERFDSSGSNGGPAGGGVSGAGQRPGSSGTGWTK 120 (2472)
Q Consensus 88 e~~ds~g~~~g~~~~~~~g~g~rp~ssg~gwtk 120 (2472)
-+.| |..-.|+--| +||.+
T Consensus 71 ~g~d-------pn~~lVp~~G-------Tgw~~ 89 (468)
T KOG4817|consen 71 HGSD-------PNNLLVPVEG-------TGWGG 89 (468)
T ss_pred cCCC-------CCceeeecCC-------ccccc
Confidence 9999 7655444333 47764
No 42
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=91.31 E-value=0.44 Score=59.65 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=7.2
Q ss_pred cccccccccccc
Q 000060 858 EMESDFHENITE 869 (2472)
Q Consensus 858 e~dsdf~en~~e 869 (2472)
++=+.|-.+|.|
T Consensus 422 r~~s~f~~~f~w 433 (506)
T KOG2507|consen 422 RRVSSFANPFSW 433 (506)
T ss_pred HHHHHHhccCCC
Confidence 345667777644
No 43
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=90.99 E-value=4.8 Score=54.54 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=6.8
Q ss_pred cCCCCCCeeeccCC
Q 000060 277 YFPGPLPLVRLKPR 290 (2472)
Q Consensus 277 ~~~gplplvrl~~~ 290 (2472)
+|.-|..+|-||-+
T Consensus 217 ~~~ep~~~~~ln~~ 230 (771)
T TIGR01069 217 FYIEPQAIVKLNNK 230 (771)
T ss_pred EEEEcHHHHHHHHH
Confidence 44445555555433
No 44
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.96 E-value=7.1 Score=51.16 Aligned_cols=16 Identities=19% Similarity=0.046 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCCCC
Q 000060 497 GRGFPHNDPMHNFSRD 512 (2472)
Q Consensus 497 ~kGlL~NdpllNFgRD 512 (2472)
-.|+...+...+.=+|
T Consensus 181 k~Gl~l~s~~I~~i~d 196 (548)
T COG2268 181 KMGLVLDSLAINDIND 196 (548)
T ss_pred hcCeeeeeeeeccccc
Confidence 3355544444443344
No 45
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=90.06 E-value=5.6 Score=49.15 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=12.6
Q ss_pred cccccCCCCCCCcccc---ccCCCC
Q 000060 515 PLLKREEPYQDDPFMK---DFGSSS 536 (2472)
Q Consensus 515 ~~~k~mkPf~EDpf~~---DfGa~g 536 (2472)
...+|-+-...|||+. ||..++
T Consensus 48 iE~kYGK~NinDP~~ALqRDf~~l~ 72 (561)
T KOG1103|consen 48 IEAKYGKLNINDPFAALQRDFAILG 72 (561)
T ss_pred HHHhhcccccCChHHHHHHHHHHHh
Confidence 3445666666777664 555544
No 46
>PRK12705 hypothetical protein; Provisional
Probab=90.01 E-value=6.7 Score=51.14 Aligned_cols=6 Identities=33% Similarity=0.346 Sum_probs=2.7
Q ss_pred cccccc
Q 000060 780 SSTFIT 785 (2472)
Q Consensus 780 sS~F~P 785 (2472)
.++|-|
T Consensus 243 ls~fdp 248 (508)
T PRK12705 243 ISSFNP 248 (508)
T ss_pred hcccCc
Confidence 344543
No 47
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=89.81 E-value=9.7 Score=48.08 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=10.2
Q ss_pred ccccccCCCCchhhhcc
Q 000060 189 LQAALPAASGSEKKQKD 205 (2472)
Q Consensus 189 l~a~lp~~~~~~~k~k~ 205 (2472)
|||..|+--+++.|-|+
T Consensus 82 lqagtpplqVnEEk~~a 98 (672)
T KOG4722|consen 82 LQAGTPPLQVNEEKEKA 98 (672)
T ss_pred HhcCCCCCCCchhhccc
Confidence 56666666666655443
No 48
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.76 E-value=2.5 Score=51.13 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCcCCC
Q 000060 798 DSAFGGRAVPRKEFY 812 (2472)
Q Consensus 798 Ds~fG~rspprK~f~ 812 (2472)
|++-=|+.|||+.|.
T Consensus 249 ~P~~f~t~fPR~tf~ 263 (290)
T KOG2689|consen 249 DPYSFHTGFPRVTFT 263 (290)
T ss_pred CCeeeecCCCceecc
Confidence 555567788887765
No 49
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=88.37 E-value=7.8 Score=48.02 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=10.4
Q ss_pred ccCCCCcccccCCCCCCcccC
Q 000060 743 SFDMSSRNQFARDNSSGFLDR 763 (2472)
Q Consensus 743 ~~emg~RvhtSRd~sSs~LdR 763 (2472)
..+.+.+.|.+--+.+++.||
T Consensus 289 ~~~v~g~~~p~k~~~~sk~dr 309 (361)
T KOG3634|consen 289 PEEVTGRWKPPKVQISSKYDR 309 (361)
T ss_pred hhhhcCCCCCceeehhhhhhh
Confidence 334445555544445555555
No 50
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=88.30 E-value=11 Score=44.74 Aligned_cols=15 Identities=40% Similarity=0.430 Sum_probs=11.1
Q ss_pred ccccCCCC-CCCCCCc
Q 000060 529 MKDFGSSS-FDGRDPF 543 (2472)
Q Consensus 529 ~~DfGa~g-~dGrDP~ 543 (2472)
..-||+-| ..|-||-
T Consensus 63 Rk~fGRYG~aSgV~P~ 78 (217)
T PF10147_consen 63 RKLFGRYGLASGVDPG 78 (217)
T ss_pred HHHHHhhhhhcCCChh
Confidence 34688888 7788886
No 51
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.19 E-value=16 Score=48.60 Aligned_cols=12 Identities=17% Similarity=0.152 Sum_probs=6.2
Q ss_pred ccccCCccccCC
Q 000060 476 NRFRGDAFQRSS 487 (2472)
Q Consensus 476 grYrG~SfQnsS 487 (2472)
-.|-|.+.-|..
T Consensus 712 ~~dsg~~s~~~~ 723 (1187)
T KOG0579|consen 712 VDDSGNASENAA 723 (1187)
T ss_pred CCccCccccccC
Confidence 345565555543
No 52
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=88.18 E-value=0.92 Score=56.98 Aligned_cols=6 Identities=67% Similarity=0.772 Sum_probs=2.9
Q ss_pred cccccc
Q 000060 907 RSRYSM 912 (2472)
Q Consensus 907 R~Rysm 912 (2472)
|+|.-|
T Consensus 464 rsr~~~ 469 (506)
T KOG2507|consen 464 RSRRRM 469 (506)
T ss_pred hhhhcC
Confidence 555444
No 53
>PLN02316 synthase/transferase
Probab=88.00 E-value=5.2 Score=55.71 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=11.5
Q ss_pred CcCcCcccccCCCC--ccccccc
Q 000060 766 PFNSWRRDAFESGN--SSTFITQ 786 (2472)
Q Consensus 766 PinSWrR~~fl~q~--sS~F~Pq 786 (2472)
..+.|=+.-|.+|. .+.|.|+
T Consensus 507 ~~ev~~~g~~NrWth~~~~~~~~ 529 (1036)
T PLN02316 507 KPEVWFRGSFNRWTHRLGPLPPQ 529 (1036)
T ss_pred CceEEEEccccCcCCCCCCCCce
Confidence 34455566666665 3346554
No 54
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=87.94 E-value=3.1 Score=53.18 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=10.0
Q ss_pred CCCCCCCcccccccccC
Q 000060 75 PPPLNLPSLRKEHERFD 91 (2472)
Q Consensus 75 p~plnlpslrkehe~~d 91 (2472)
+.||.--+-.++||--|
T Consensus 17 s~~l~ed~~~~~~ed~d 33 (708)
T KOG3654|consen 17 SKPLSEDPTKAPVEDPD 33 (708)
T ss_pred CcccccccccCCcCCCc
Confidence 44555445556777666
No 55
>PLN02316 synthase/transferase
Probab=87.37 E-value=11 Score=52.57 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=4.6
Q ss_pred hhHhhhccc
Q 000060 267 RSEQVRKQE 275 (2472)
Q Consensus 267 ~~e~~rk~~ 275 (2472)
+.|+.||+.
T Consensus 120 ~~~~~~~~~ 128 (1036)
T PLN02316 120 ERENLRKRE 128 (1036)
T ss_pred hHHHHHHHH
Confidence 345555554
No 56
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.16 E-value=39 Score=42.99 Aligned_cols=11 Identities=9% Similarity=0.081 Sum_probs=4.8
Q ss_pred hHHhhhhhhhc
Q 000060 549 GVVKKKKDVLK 559 (2472)
Q Consensus 549 alVKKKKEeaK 559 (2472)
.-++.++++.+
T Consensus 81 ~qlr~~rtel~ 91 (499)
T COG4372 81 PQLRALRTELG 91 (499)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 57
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=87.02 E-value=30 Score=47.58 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=20.5
Q ss_pred ccccCCCCCCCCCCCCCCC--CCccccccCcCCccccccccccccccCCC
Q 000060 318 AYWEGDFDMPRPSVLPHKP--AHNVFERWGQRDSETGKVSSSEVARVDPF 365 (2472)
Q Consensus 318 ~~w~~~fd~p~~~~~p~k~--~~~~~~~~g~r~~e~~k~~~~e~~~~~~~ 365 (2472)
+-|+++-=.++--|||--. --.+| +|-||+.---+.-||-.
T Consensus 752 pvy~eepfvF~KVvLpeLA~lRiavy-------eEggK~ig~RIlpvd~l 794 (1189)
T KOG1265|consen 752 PVYEEEPFVFRKVVLPELASLRIAVY-------EEGGKFIGQRILPVDGL 794 (1189)
T ss_pred cccccCCcccceecccchhheeeeee-------ccCCceeeeeccchhcc
Confidence 4566553334455777321 11223 46667666556555543
No 58
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=86.68 E-value=51 Score=42.02 Aligned_cols=7 Identities=57% Similarity=0.857 Sum_probs=4.3
Q ss_pred CCCCCCc
Q 000060 537 FDGRDPF 543 (2472)
Q Consensus 537 ~dGrDP~ 543 (2472)
|+|-|..
T Consensus 142 F~GEDl~ 148 (379)
T PF05914_consen 142 FDGEDLN 148 (379)
T ss_pred cccccCC
Confidence 5666665
No 59
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=86.41 E-value=36 Score=44.56 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=6.9
Q ss_pred ccccCCCCCCCCCCCC
Q 000060 318 AYWEGDFDMPRPSVLP 333 (2472)
Q Consensus 318 ~~w~~~fd~p~~~~~p 333 (2472)
+||+..|+-.-...+|
T Consensus 26 A~~n~~f~d~f~~~vP 41 (582)
T PF09731_consen 26 AKQNDNFRDFFEEYVP 41 (582)
T ss_pred hhcChHHHHHHHHhCC
Confidence 3455544433333345
No 60
>PTZ00491 major vault protein; Provisional
Probab=86.04 E-value=18 Score=49.50 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 000060 497 GRGFPHNDPMHNFSRDKR 514 (2472)
Q Consensus 497 ~kGlL~NdpllNFgRDKR 514 (2472)
.+|+.-..+.-.||+..-
T Consensus 583 IR~aVA~~~Fd~FHknsa 600 (850)
T PTZ00491 583 VRAAVASEPFDEFHKNSA 600 (850)
T ss_pred HHHHHhcCCHHHHhccHH
Confidence 566666666666666543
No 61
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=85.47 E-value=7.2 Score=48.27 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=9.4
Q ss_pred ccCCCCcCcCcccccCCCCcccccc
Q 000060 761 LDRGKPFNSWRRDAFESGNSSTFIT 785 (2472)
Q Consensus 761 LdR~KPinSWrR~~fl~q~sS~F~P 785 (2472)
+|-++.-..|..+.. +.+++|-+
T Consensus 287 ~d~~~v~g~~~p~k~--~~~sk~dr 309 (361)
T KOG3634|consen 287 LDPEEVTGRWKPPKV--QISSKYDR 309 (361)
T ss_pred CChhhhcCCCCCcee--ehhhhhhh
Confidence 344444444444432 13445543
No 62
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.31 E-value=22 Score=47.47 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=5.4
Q ss_pred cCCCccccccc
Q 000060 183 GEDFPSLQAAL 193 (2472)
Q Consensus 183 gedfpsl~a~l 193 (2472)
|+-|-++|++.
T Consensus 473 G~~~~s~qs~~ 483 (1187)
T KOG0579|consen 473 GSTFFSPQSSA 483 (1187)
T ss_pred CccccCccccC
Confidence 44444555544
No 63
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=85.12 E-value=17 Score=50.71 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=35.8
Q ss_pred cCCCCCCccCCCccccccccccCCCccccccccCCCCchh--hhcccch---hHhhhcccccccccccCCCCCCCc
Q 000060 162 SGTVGPALSSFAPAEKASVLRGEDFPSLQAALPAASGSEK--KQKDGFS---QKQKQGMSQELGNNEQKDGCRFNA 232 (2472)
Q Consensus 162 ~~~~~~~~~~~~~~ek~~vlrgedfpsl~a~lp~~~~~~~--k~k~~~~---qk~kq~~~~~~~~~e~~~~~~~~~ 232 (2472)
+|.++|-...|..+|+-+ --+|+.|-+++++.. ++-...- .||-|.+-+.|..-|.+-.+-.++
T Consensus 1193 tGv~gay~s~f~~me~kl-------~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~ 1261 (1758)
T KOG0994|consen 1193 TGVLGAYASRFLDMEEKL-------EEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNS 1261 (1758)
T ss_pred ccCchhhHhHHHHHHHHH-------HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Confidence 566666555555554332 124566656666555 2222222 377788888888767665554443
No 64
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=84.40 E-value=28 Score=51.53 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=4.7
Q ss_pred CCccccccc
Q 000060 185 DFPSLQAAL 193 (2472)
Q Consensus 185 dfpsl~a~l 193 (2472)
||.-|....
T Consensus 302 ~Y~f~~~~~ 310 (1930)
T KOG0161|consen 302 DYKFLSNGE 310 (1930)
T ss_pred hhhhhcccc
Confidence 555555544
No 65
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=83.96 E-value=30 Score=47.47 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=8.0
Q ss_pred ccccCcCCccccccccccc
Q 000060 341 FERWGQRDSETGKVSSSEV 359 (2472)
Q Consensus 341 ~~~~g~r~~e~~k~~~~e~ 359 (2472)
|-++--++|-.--|+..|+
T Consensus 740 ~rtrt~~~n~~npvy~eep 758 (1189)
T KOG1265|consen 740 FRTRTVQGNSFNPVYEEEP 758 (1189)
T ss_pred hhhccccCCCCCcccccCC
Confidence 4333334444444443333
No 66
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=83.79 E-value=0.33 Score=55.65 Aligned_cols=12 Identities=33% Similarity=0.252 Sum_probs=3.8
Q ss_pred CCCCcccCCCCc
Q 000060 756 NSSGFLDRGKPF 767 (2472)
Q Consensus 756 ~sSs~LdR~KPi 767 (2472)
+.-.+-||+|||
T Consensus 143 ltGv~DdrGkfI 154 (188)
T PF09756_consen 143 LTGVIDDRGKFI 154 (188)
T ss_dssp S-EEE-TT--EE
T ss_pred ceeeEcCCCCeE
Confidence 333444665544
No 67
>PTZ00491 major vault protein; Provisional
Probab=83.24 E-value=12 Score=51.12 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=6.6
Q ss_pred CCcccccCCCC
Q 000060 150 DGVGVYVPPSV 160 (2472)
Q Consensus 150 ~~~~~~~~~s~ 160 (2472)
++.|.|+|..-
T Consensus 198 t~~gaylP~v~ 208 (850)
T PTZ00491 198 RTPGAYLPGVF 208 (850)
T ss_pred eccccccCCCc
Confidence 44667776553
No 68
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=83.20 E-value=64 Score=38.67 Aligned_cols=6 Identities=17% Similarity=0.827 Sum_probs=2.4
Q ss_pred cccccc
Q 000060 473 EQYNRF 478 (2472)
Q Consensus 473 aQygrY 478 (2472)
-.||||
T Consensus 64 k~fGRY 69 (217)
T PF10147_consen 64 KLFGRY 69 (217)
T ss_pred HHHHhh
Confidence 334444
No 69
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=82.37 E-value=41 Score=49.98 Aligned_cols=11 Identities=9% Similarity=-0.197 Sum_probs=6.5
Q ss_pred ccCCCCCCCCC
Q 000060 253 RENGGINHDTG 263 (2472)
Q Consensus 253 ~~~~~~~~~~g 263 (2472)
+-++-..|...
T Consensus 454 DiaGFEIfe~n 464 (1930)
T KOG0161|consen 454 DIAGFEIFEFN 464 (1930)
T ss_pred eeccccccCcC
Confidence 55666666554
No 70
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=82.28 E-value=22 Score=45.91 Aligned_cols=13 Identities=15% Similarity=-0.008 Sum_probs=5.3
Q ss_pred CccccccCcCCcc
Q 000060 338 HNVFERWGQRDSE 350 (2472)
Q Consensus 338 ~~~~~~~g~r~~e 350 (2472)
|.-+.--|-|.+-
T Consensus 154 H~cH~dCALr~~~ 166 (446)
T PF07227_consen 154 HWCHLDCALRHEL 166 (446)
T ss_pred ceehhhhhccccc
Confidence 3333333444443
No 71
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=82.26 E-value=44 Score=39.31 Aligned_cols=6 Identities=33% Similarity=0.645 Sum_probs=2.9
Q ss_pred ccCCCC
Q 000060 531 DFGSSS 536 (2472)
Q Consensus 531 DfGa~g 536 (2472)
-||+-|
T Consensus 76 ~FgrYG 81 (225)
T KOG4848|consen 76 RFGRYG 81 (225)
T ss_pred HHHhhc
Confidence 455544
No 72
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=82.14 E-value=60 Score=41.95 Aligned_cols=11 Identities=27% Similarity=0.667 Sum_probs=4.9
Q ss_pred cccccCccccC
Q 000060 837 TVSRGQRWNMS 847 (2472)
Q Consensus 837 r~~~p~rWnip 847 (2472)
...-..+|.-+
T Consensus 254 ~~~~~~rws~~ 264 (445)
T PRK13428 254 RTAVSQRWSAN 264 (445)
T ss_pred HHHHhCccCcc
Confidence 34444555443
No 73
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=81.97 E-value=5.9 Score=51.04 Aligned_cols=9 Identities=11% Similarity=0.375 Sum_probs=3.4
Q ss_pred CCCCCCCCC
Q 000060 501 PHNDPMHNF 509 (2472)
Q Consensus 501 L~NdpllNF 509 (2472)
||+.....|
T Consensus 205 L~~e~v~~~ 213 (460)
T KOG1363|consen 205 LCNEAVVDY 213 (460)
T ss_pred hhhHHHHHH
Confidence 344333333
No 74
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=81.44 E-value=78 Score=40.45 Aligned_cols=13 Identities=15% Similarity=0.084 Sum_probs=5.7
Q ss_pred CCCcccccCCCCC
Q 000060 512 DKRPLLKREEPYQ 524 (2472)
Q Consensus 512 DKR~~~k~mkPf~ 524 (2472)
|++.....|+.|.
T Consensus 131 d~~~G~Ss~Q~F~ 143 (379)
T PF05914_consen 131 DPRCGPSSLQKFD 143 (379)
T ss_pred CCccCchhccccc
Confidence 3444444444444
No 75
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.42 E-value=51 Score=42.52 Aligned_cols=7 Identities=14% Similarity=0.302 Sum_probs=2.7
Q ss_pred hHHhhhh
Q 000060 549 GVVKKKK 555 (2472)
Q Consensus 549 alVKKKK 555 (2472)
.++++|.
T Consensus 225 ~flerkv 231 (502)
T KOG0982|consen 225 RFLERKV 231 (502)
T ss_pred HHHHHHH
Confidence 3334433
No 76
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=81.04 E-value=37 Score=49.11 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=3.3
Q ss_pred ccccccc
Q 000060 349 SETGKVS 355 (2472)
Q Consensus 349 ~e~~k~~ 355 (2472)
|-.||..
T Consensus 33 NGsGKS~ 39 (1353)
T TIGR02680 33 NGAGKSK 39 (1353)
T ss_pred CCCcHHH
Confidence 4455543
No 77
>PRK12472 hypothetical protein; Provisional
Probab=80.50 E-value=20 Score=46.61 Aligned_cols=10 Identities=0% Similarity=-0.489 Sum_probs=6.0
Q ss_pred ccCccccccc
Q 000060 469 QYGSEQYNRF 478 (2472)
Q Consensus 469 ~ygiaQygrY 478 (2472)
.|++|..+|+
T Consensus 122 GiaIHGt~~p 131 (508)
T PRK12472 122 GIALHGGPLP 131 (508)
T ss_pred eEEEecCCCC
Confidence 4666666654
No 78
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=80.15 E-value=77 Score=36.41 Aligned_cols=12 Identities=8% Similarity=-0.044 Sum_probs=6.0
Q ss_pred ccCCCCCCCCCC
Q 000060 531 DFGSSSFDGRDP 542 (2472)
Q Consensus 531 DfGa~g~dGrDP 542 (2472)
+-|..|.-..|.
T Consensus 16 ~~~~~gmp~ld~ 27 (181)
T PRK13454 16 AASAPGMPQLDF 27 (181)
T ss_pred ccCCCCCCCCcH
Confidence 445555545554
No 79
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=80.08 E-value=15 Score=45.09 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=7.1
Q ss_pred CCCccccccCcCCc
Q 000060 336 PAHNVFERWGQRDS 349 (2472)
Q Consensus 336 ~~~~~~~~~g~r~~ 349 (2472)
|++-.||+|=-|+|
T Consensus 3 ~~NiM~D~RV~RGn 16 (291)
T PF06098_consen 3 YGNIMYDRRVVRGN 16 (291)
T ss_pred cccccCCCCcCCCC
Confidence 45555665544443
No 80
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=78.10 E-value=27 Score=43.08 Aligned_cols=11 Identities=36% Similarity=0.446 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 000060 582 QEQERQRIIEE 592 (2472)
Q Consensus 582 eEEEReReEEE 592 (2472)
.|....+..+|
T Consensus 142 lEQAl~EV~EE 152 (291)
T PF06098_consen 142 LEQALMEVMEE 152 (291)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 81
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=77.83 E-value=68 Score=43.62 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=6.1
Q ss_pred CCcccCCCCcccc
Q 000060 740 LHRSFDMSSRNQF 752 (2472)
Q Consensus 740 ~eR~~emg~Rvht 752 (2472)
+.+.+..+.|+.-
T Consensus 686 v~rl~ragrrvgi 698 (828)
T PF04094_consen 686 VSRLERAGRRVGI 698 (828)
T ss_pred HHHHHhhcccccc
Confidence 3444455555543
No 82
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=77.58 E-value=64 Score=43.85 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=4.9
Q ss_pred chhhHHhhhhhh
Q 000060 546 GLVGVVKKKKDV 557 (2472)
Q Consensus 546 smialVKKKKEe 557 (2472)
.|.++++.-+|+
T Consensus 439 ~l~~v~re~eee 450 (828)
T PF04094_consen 439 TLDSVMRETEEE 450 (828)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 83
>PRK04863 mukB cell division protein MukB; Provisional
Probab=77.11 E-value=79 Score=46.46 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=7.0
Q ss_pred CCCCCCCCceee
Q 000060 1288 SLIPSPFPAIQI 1299 (2472)
Q Consensus 1288 sLipspvPAIQI 1299 (2472)
.+.+.|=|+|+-
T Consensus 830 ~f~~~pe~~~~~ 841 (1486)
T PRK04863 830 AFEADPEAELRQ 841 (1486)
T ss_pred hcCCCcHHHHHH
Confidence 456666666653
No 84
>PRK04863 mukB cell division protein MukB; Provisional
Probab=76.87 E-value=73 Score=46.78 Aligned_cols=29 Identities=31% Similarity=0.303 Sum_probs=13.0
Q ss_pred ccccccCCCcccCCCCCcccccchhhhhc
Q 000060 1090 EYDEDEDGYQEEDVPEGDDENIELTQEFE 1118 (2472)
Q Consensus 1090 eyded~d~y~~edei~~~deni~l~~e~~ 1118 (2472)
-||.-+|=|-.|-.+..=|+..-=++||+
T Consensus 728 L~~~p~d~~li~~~~~~~~~~~~~~~~~~ 756 (1486)
T PRK04863 728 LEDCPEDLYLIEGDPDSFDDSVFSVEELE 756 (1486)
T ss_pred ccCCccceeeecCChhHHhccCccHHHhc
Confidence 34455566654333333244444444444
No 85
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.85 E-value=1.1e+02 Score=43.19 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCcccccCCCCCCCccccccCCCC--CCCCCCcccchhhHHhhhhhhhc
Q 000060 504 DPMHNFSRDKRPLLKREEPYQDDPFMKDFGSSS--FDGRDPFSAGLVGVVKKKKDVLK 559 (2472)
Q Consensus 504 dpllNFgRDKR~~~k~mkPf~EDpf~~DfGa~g--~dGrDP~t~smialVKKKKEeaK 559 (2472)
+.++...+|++..-+ .-..++ |.|...| -.|-.+...+++..+.+-.+...
T Consensus 632 d~AKkVaf~~~i~~r--sVTl~G---DV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~ 684 (1174)
T KOG0933|consen 632 DVAKKVAFDPKIRTR--SVTLEG---DVYDPSGTLTGGSRSKGADLLRQLQKLKQAQK 684 (1174)
T ss_pred HHHHHhhcccccccc--eeeecC---ceeCCCCcccCCCCCCcccHHHHHHHHHHHHH
Confidence 344555566554331 112233 5565555 33444444555454554444444
No 86
>PRK12472 hypothetical protein; Provisional
Probab=75.35 E-value=47 Score=43.49 Aligned_cols=7 Identities=0% Similarity=-0.092 Sum_probs=3.1
Q ss_pred CCCcccc
Q 000060 746 MSSRNQF 752 (2472)
Q Consensus 746 mg~Rvht 752 (2472)
+|.++.|
T Consensus 368 ~gthvft 374 (508)
T PRK12472 368 IGTHVFT 374 (508)
T ss_pred cceEEEE
Confidence 4444443
No 87
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.30 E-value=32 Score=47.23 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=20.6
Q ss_pred cccCCCCCCcccccCCCCCCCCCCCCCCCCCccccccCc-CCcccc
Q 000060 308 DRDHGFSKSEAYWEGDFDMPRPSVLPHKPAHNVFERWGQ-RDSETG 352 (2472)
Q Consensus 308 ~rd~gfsk~e~~w~~~fd~p~~~~~p~k~~~~~~~~~g~-r~~e~~ 352 (2472)
|+..|--+.--|++- .+++.+|-|.-| |.-|.+
T Consensus 46 GKNnGsVqg~qYF~C------------d~ncG~FVr~sq~r~lEda 79 (1243)
T KOG0971|consen 46 GKNNGSVQGVQYFEC------------DENCGVFVRSSQVRELEDA 79 (1243)
T ss_pred CCCCCcccceeeEec------------CCCcceEeehhhhHHhhcc
Confidence 456666666667543 246677887777 666654
No 88
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=74.34 E-value=1.3e+02 Score=42.05 Aligned_cols=7 Identities=29% Similarity=0.653 Sum_probs=4.2
Q ss_pred Ccccccc
Q 000060 779 NSSTFIT 785 (2472)
Q Consensus 779 ~sS~F~P 785 (2472)
+.-+|+|
T Consensus 573 gr~tflp 579 (1164)
T TIGR02169 573 GRATFLP 579 (1164)
T ss_pred CCeeecc
Confidence 3566766
No 89
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.25 E-value=48 Score=46.90 Aligned_cols=11 Identities=18% Similarity=0.449 Sum_probs=5.2
Q ss_pred CCCCCCCCCCC
Q 000060 885 VHPPYPDRIYP 895 (2472)
Q Consensus 885 p~pP~~eR~Yq 895 (2472)
.+|-+-+|+|-
T Consensus 688 ~tpenvPRLfD 698 (1293)
T KOG0996|consen 688 TTPENVPRLFD 698 (1293)
T ss_pred CCCCCcchHhh
Confidence 34444455554
No 90
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=73.96 E-value=63 Score=44.13 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=9.2
Q ss_pred CCccccCCCCCCCccc
Q 000060 69 VPKLSVPPPLNLPSLR 84 (2472)
Q Consensus 69 ~~klsvp~plnlpslr 84 (2472)
--|-|--.|+| |-++
T Consensus 229 elkrSTel~in-PD~~ 243 (1424)
T KOG4572|consen 229 ELKRSTELPIN-PDEK 243 (1424)
T ss_pred hhccccccCCC-CCCc
Confidence 55566666777 5544
No 91
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=72.55 E-value=1.5e+02 Score=38.55 Aligned_cols=15 Identities=27% Similarity=0.250 Sum_probs=6.9
Q ss_pred cCccCCCcccccccC
Q 000060 997 TSRCDSQSSLSVSSA 1011 (2472)
Q Consensus 997 t~~~dsQsSLSvssp 1011 (2472)
+-+|.|=.+-.|=||
T Consensus 383 g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSP 397 (459)
T ss_pred ccccccccceeEECC
Confidence 344444444444444
No 92
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=72.21 E-value=60 Score=46.17 Aligned_cols=15 Identities=13% Similarity=0.430 Sum_probs=6.8
Q ss_pred ccCccccccccCCccc
Q 000060 469 QYGSEQYNRFRGDAFQ 484 (2472)
Q Consensus 469 ~ygiaQygrYrG~SfQ 484 (2472)
++.+.|.- |.|-+|-
T Consensus 389 ~f~Gn~LP-FIGfTy~ 403 (1317)
T KOG0612|consen 389 AFSGNHLP-FIGFTYT 403 (1317)
T ss_pred CCcCCcCC-eeeeeec
Confidence 44444443 4444444
No 93
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=72.12 E-value=2.6e+02 Score=37.71 Aligned_cols=9 Identities=11% Similarity=-0.164 Sum_probs=3.7
Q ss_pred cCCCCCCcc
Q 000060 753 ARDNSSGFL 761 (2472)
Q Consensus 753 SRd~sSs~L 761 (2472)
|+-+....|
T Consensus 497 ~~~l~~~~l 505 (546)
T PF07888_consen 497 PQPLGHYSL 505 (546)
T ss_pred cCCCCCcCc
Confidence 344444444
No 94
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=71.62 E-value=2.8e+02 Score=35.14 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=6.5
Q ss_pred CCCCCcccccccc
Q 000060 376 GREGNMWRASSSL 388 (2472)
Q Consensus 376 g~e~nsWR~sspl 388 (2472)
|+.-++|+..+.+
T Consensus 53 gr~r~~~~lr~~~ 65 (340)
T KOG3756|consen 53 GRGRGSLLLRRGF 65 (340)
T ss_pred cchhhhhhhhhhh
Confidence 4444466555544
No 95
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=71.21 E-value=16 Score=46.14 Aligned_cols=11 Identities=36% Similarity=0.601 Sum_probs=7.1
Q ss_pred cCCCCCCcccC
Q 000060 753 ARDNSSGFLDR 763 (2472)
Q Consensus 753 SRd~sSs~LdR 763 (2472)
....+|.|.++
T Consensus 412 ~~g~dSg~~~d 422 (506)
T KOG2441|consen 412 GKGLDSGFADD 422 (506)
T ss_pred ccCcccccccc
Confidence 45666677666
No 96
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=70.42 E-value=41 Score=45.90 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=4.6
Q ss_pred CcccccccccC
Q 000060 81 PSLRKEHERFD 91 (2472)
Q Consensus 81 pslrkehe~~d 91 (2472)
|-+.-.|-.+-
T Consensus 83 ~~f~v~~i~~n 93 (717)
T PF10168_consen 83 PLFEVHQISLN 93 (717)
T ss_pred CceeEEEEEEC
Confidence 33444444433
No 97
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=70.37 E-value=1.1e+02 Score=41.72 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=9.5
Q ss_pred cCCCCCCCCCcc
Q 000060 912 MRHPRVLPPPTL 923 (2472)
Q Consensus 912 mRqPRVlPPP~~ 923 (2472)
||++-|+++|.-
T Consensus 440 ~~~~~~~~~p~~ 451 (916)
T KOG0249|consen 440 MDRMGVMTLPSD 451 (916)
T ss_pred ccCCccccCccc
Confidence 688899998843
No 98
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=67.26 E-value=1.9e+02 Score=37.68 Aligned_cols=8 Identities=38% Similarity=0.119 Sum_probs=3.5
Q ss_pred cccccccC
Q 000060 1004 SSLSVSSA 1011 (2472)
Q Consensus 1004 sSLSvssp 1011 (2472)
.+|.++++
T Consensus 354 ~~lLsssR 361 (459)
T KOG0288|consen 354 LELLSSSR 361 (459)
T ss_pred eEEeeecC
Confidence 34444444
No 99
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=66.00 E-value=2.5e+02 Score=39.00 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=14.1
Q ss_pred cccccCcCCccCC--ccccccccchh
Q 000060 1061 NMIAPASSISAGD--DEEWAVENDER 1084 (2472)
Q Consensus 1061 ~~~~~~s~vs~~~--d~ew~~~~~e~ 1084 (2472)
-+|+|-.-|+-+| .+-|.+.+---
T Consensus 812 grmnGwlRVyRdd~~~stwl~~wamm 837 (1265)
T KOG0976|consen 812 GRMNGWLRVYRDDAEASTWLLGWAMM 837 (1265)
T ss_pred hhcccceeeeccccchhHHHHHHHHh
Confidence 3566655565555 56677766544
No 100
>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]
Probab=65.95 E-value=97 Score=38.32 Aligned_cols=14 Identities=14% Similarity=0.494 Sum_probs=6.2
Q ss_pred ccccCCCCCCcCCc
Q 000060 843 RWNMSGDGDHYGRN 856 (2472)
Q Consensus 843 rWnipGD~Dt~gr~ 856 (2472)
+|.-+-...-+|+.
T Consensus 311 RWE~~~P~K~~~~~ 324 (331)
T KOG2894|consen 311 RWEPYDPEKKWDKY 324 (331)
T ss_pred hCcCCCCccccchh
Confidence 44444444444444
No 101
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.77 E-value=91 Score=41.94 Aligned_cols=12 Identities=17% Similarity=0.127 Sum_probs=4.8
Q ss_pred CCCCcccchhhH
Q 000060 539 GRDPFSAGLVGV 550 (2472)
Q Consensus 539 GrDP~t~smial 550 (2472)
+.|..-..|.+.
T Consensus 339 ~ddH~RDALAAA 350 (652)
T COG2433 339 SDDHERDALAAA 350 (652)
T ss_pred CCchHHHHHHHH
Confidence 334444444333
No 102
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=65.49 E-value=1.8e+02 Score=37.85 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=8.6
Q ss_pred cCCcccccCCCCCCCCCC
Q 000060 871 YGDVGWGQGRYRGNVHPP 888 (2472)
Q Consensus 871 ~gD~gW~~s~s~g~p~pP 888 (2472)
||-.=.++..+|+..+|-
T Consensus 478 ~g~~llA~r~sH~s~~~t 495 (552)
T KOG2129|consen 478 PGHRLLAERRSHGSSPPT 495 (552)
T ss_pred CchhHHHHHHhcCCCCcc
Confidence 344344445555554443
No 103
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=65.11 E-value=2.8e+02 Score=37.70 Aligned_cols=9 Identities=56% Similarity=0.962 Sum_probs=5.1
Q ss_pred ccccccccC
Q 000060 187 PSLQAALPA 195 (2472)
Q Consensus 187 psl~a~lp~ 195 (2472)
|++.+.||.
T Consensus 47 p~~~~~l~~ 55 (594)
T PF05667_consen 47 PSLGSSLPR 55 (594)
T ss_pred ccccCCCcc
Confidence 555555554
No 104
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=65.06 E-value=97 Score=38.64 Aligned_cols=9 Identities=33% Similarity=0.689 Sum_probs=4.0
Q ss_pred cCCCCCCcc
Q 000060 398 IGDNRNGIC 406 (2472)
Q Consensus 398 ~gneR~Gig 406 (2472)
+-|.|-.+|
T Consensus 143 ~hDsRiH~C 151 (406)
T KOG3859|consen 143 YHDSRIHVC 151 (406)
T ss_pred hccCceEEE
Confidence 344444444
No 105
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=64.43 E-value=1.6e+02 Score=35.94 Aligned_cols=82 Identities=32% Similarity=0.662 Sum_probs=45.5
Q ss_pred CCCCCcccccCCCCCCccCCCCCccccCCCCCCCCcCcccccccCCCCCCCCCcCCcccccC---CCCCCCCCCCcCCCC
Q 000060 2223 TNLPAPIQHLAPGSPLLPLASPLAMFDVSPFQPPSDMSVQARWSHVPAPPLQSVPMSMPLQR---PTDGVLPSQFNHGTS 2299 (2472)
Q Consensus 2223 ~~~p~~~qhl~pg~~~~p~~sp~~mfd~~pfq~s~~m~~q~~w~hvp~~p~~~~p~s~~l~q---~~~~~~~sq~~~~~~ 2299 (2472)
+-|| |-|=-||.+-||=.-+++-||- . +--.||. +|...||-.-|+-. ++++-++.-+|.+.
T Consensus 187 p~mp--i~~g~p~~~p~pg~p~~s~~~~----~----~~~~r~~----~p~~~vp~~pp~~~~~~~~~~q~~~~~~qg~- 251 (341)
T KOG2893|consen 187 PRMP--IGHGPPGGPPMPGPPQRSRFDQ----P----DGGDRWG----PPMRGVPRTPPYENEHEHQDYQAPDDYNQGG- 251 (341)
T ss_pred CcCc--CCCCCCCCCCCCCCCccccccC----C----CCCCCCC----CCcCCCCCCCCcCCcccccccccchhhhcCC-
Confidence 3466 6777777777776677777753 1 1125775 45555555444433 12444444455444
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCcc
Q 000060 2300 ADQSSASNRFPESRNSTPSDSSQNFH 2325 (2472)
Q Consensus 2300 ~d~~~~~~rf~~~~~s~~~~~~~~f~ 2325 (2472)
-..||.+..-+++.. -..|+
T Consensus 252 -----~~~~fr~~~r~~p~~-~s~~~ 271 (341)
T KOG2893|consen 252 -----YDDRFREGDRGGPPG-GSRFD 271 (341)
T ss_pred -----ccccccccccCCCCC-CCCCC
Confidence 245788877666543 34464
No 106
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=63.87 E-value=25 Score=44.65 Aligned_cols=9 Identities=22% Similarity=0.099 Sum_probs=5.0
Q ss_pred CCCCCCccc
Q 000060 447 RQPWNNSVH 455 (2472)
Q Consensus 447 ~qP~n~~mS 455 (2472)
+|+.+.||+
T Consensus 189 kqriIrmVe 197 (506)
T KOG2441|consen 189 KQRIIRMVE 197 (506)
T ss_pred hhhhhhhhh
Confidence 356656654
No 107
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=63.84 E-value=1.1e+02 Score=39.73 Aligned_cols=12 Identities=17% Similarity=0.097 Sum_probs=6.1
Q ss_pred ccCCCCCCCCCC
Q 000060 531 DFGSSSFDGRDP 542 (2472)
Q Consensus 531 DfGa~g~dGrDP 542 (2472)
=||.+--++++-
T Consensus 202 LFGpp~~~~~n~ 213 (575)
T KOG4403|consen 202 LFGPPYKTNHNW 213 (575)
T ss_pred EecCCcCCCcch
Confidence 455555555544
No 108
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=63.69 E-value=2.7e+02 Score=39.87 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=13.4
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCccccccc
Q 000060 431 VQDDSGRRDIDYGPGGRQPWNNSVHSFNS 459 (2472)
Q Consensus 431 s~dstGgRDSgyg~~g~qP~n~~mSSwg~ 459 (2472)
.-.+..+++-.++....+++..-+...-.
T Consensus 553 vvs~~~~~~y~~~~~p~~~~pTil~~le~ 581 (1074)
T KOG0250|consen 553 VVSSFTPFDYSVGRNPGYEFPTILDALEF 581 (1074)
T ss_pred EEecCCccccccccCCCCCCCceeeeeec
Confidence 33344555555555555544333333333
No 109
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=62.98 E-value=2.4e+02 Score=40.60 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=4.2
Q ss_pred CCCCCCcccc
Q 000060 916 RVLPPPTLTS 925 (2472)
Q Consensus 916 RVlPPP~~~s 925 (2472)
.|-|.-++|+
T Consensus 645 ~~~~~G~~tG 654 (1163)
T COG1196 645 LVEPSGSITG 654 (1163)
T ss_pred EEeCCeeeec
Confidence 3444444443
No 110
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=62.65 E-value=2.6e+02 Score=38.95 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=9.4
Q ss_pred CCCCccccceeee
Q 000060 1534 PRRPRRQRTEFRV 1546 (2472)
Q Consensus 1534 ~R~~~~~rtefrv 1546 (2472)
.++.+--|||||-
T Consensus 1197 ~~tvlaeRt~l~c 1209 (1265)
T KOG0976|consen 1197 PHTVLAERTELRC 1209 (1265)
T ss_pred chhhhhhhhheee
Confidence 3457778899874
No 111
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.85 E-value=2.7e+02 Score=40.30 Aligned_cols=6 Identities=33% Similarity=0.523 Sum_probs=2.7
Q ss_pred cCCccc
Q 000060 346 QRDSET 351 (2472)
Q Consensus 346 ~r~~e~ 351 (2472)
+|+|-.
T Consensus 192 ~~~NsS 197 (1293)
T KOG0996|consen 192 FRDNSS 197 (1293)
T ss_pred hhCCCc
Confidence 355543
No 112
>PRK03918 chromosome segregation protein; Provisional
Probab=61.43 E-value=3.3e+02 Score=37.47 Aligned_cols=7 Identities=43% Similarity=0.601 Sum_probs=4.6
Q ss_pred ccccccc
Q 000060 349 SETGKVS 355 (2472)
Q Consensus 349 ~e~~k~~ 355 (2472)
|-+||.+
T Consensus 32 nG~GKSt 38 (880)
T PRK03918 32 NGSGKSS 38 (880)
T ss_pred CCCCHHH
Confidence 6677755
No 113
>COG4499 Predicted membrane protein [Function unknown]
Probab=60.36 E-value=20 Score=45.51 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=13.9
Q ss_pred cchhhHHhhhhhhhcccccCCchhh
Q 000060 545 AGLVGVVKKKKDVLKQTDFHDPVRE 569 (2472)
Q Consensus 545 ~smialVKKKKEeaKq~E~EDklRE 569 (2472)
.-+.+++++.++..--...-...|+
T Consensus 344 ~~~~Al~k~~eevksn~~lsg~~r~ 368 (434)
T COG4499 344 LTLLALTKLYEEVKSNTDLSGDKRQ 368 (434)
T ss_pred hHHHHHHHHHHHHhcccCCCchHHH
Confidence 5567777777665543444444333
No 114
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=59.87 E-value=3.3e+02 Score=36.31 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=9.5
Q ss_pred CCCCCcccchhhHHhh
Q 000060 538 DGRDPFSAGLVGVVKK 553 (2472)
Q Consensus 538 dGrDP~t~smialVKK 553 (2472)
.-.||+...-.....|
T Consensus 77 ~~pDPLsPgE~~l~~K 92 (508)
T PF00901_consen 77 EPPDPLSPGEQGLQRK 92 (508)
T ss_pred CCCCCCCHhHHHHHHH
Confidence 4678886665554333
No 115
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=59.60 E-value=1.1e+02 Score=40.12 Aligned_cols=6 Identities=33% Similarity=0.085 Sum_probs=2.3
Q ss_pred cCCccc
Q 000060 479 RGDAFQ 484 (2472)
Q Consensus 479 rG~SfQ 484 (2472)
+-..||
T Consensus 262 il~ff~ 267 (446)
T PF07227_consen 262 ILQFFQ 267 (446)
T ss_pred HHHHHh
Confidence 333444
No 116
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=59.30 E-value=2.7e+02 Score=38.39 Aligned_cols=12 Identities=8% Similarity=0.069 Sum_probs=5.0
Q ss_pred CCCCcccCCCCc
Q 000060 1493 KAQGLTSGSRGK 1504 (2472)
Q Consensus 1493 k~~g~~sg~rgr 1504 (2472)
++-+++.-|+-|
T Consensus 823 eF~nLi~~gtdr 834 (916)
T KOG0249|consen 823 EFNNLLALGTDR 834 (916)
T ss_pred HHHhhhcccccc
Confidence 333444444433
No 117
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=57.03 E-value=42 Score=43.86 Aligned_cols=7 Identities=57% Similarity=0.904 Sum_probs=3.3
Q ss_pred cCCCCCC
Q 000060 310 DHGFSKS 316 (2472)
Q Consensus 310 d~gfsk~ 316 (2472)
|-||-+.
T Consensus 171 dmgFe~~ 177 (567)
T KOG0345|consen 171 DMGFEAS 177 (567)
T ss_pred cccHHHH
Confidence 4555433
No 118
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=56.85 E-value=74 Score=41.36 Aligned_cols=20 Identities=45% Similarity=0.689 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCCCCCCce
Q 000060 36 HSGYYGSNRARPTGGGGGGM 55 (2472)
Q Consensus 36 ~~g~~~~~~~~~~~~~gggm 55 (2472)
++|+.+...+.+|+++||||
T Consensus 71 ~s~~g~~s~~~gg~~~~~g~ 90 (641)
T KOG3915|consen 71 GSGGGGGSSGNGGGGGGGGG 90 (641)
T ss_pred CCCCCccccCCCCCCCCCCC
Confidence 33343344444444555555
No 119
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=55.91 E-value=5.7e+02 Score=35.57 Aligned_cols=9 Identities=33% Similarity=1.095 Sum_probs=5.5
Q ss_pred cCcCccccc
Q 000060 767 FNSWRRDAF 775 (2472)
Q Consensus 767 inSWrR~~f 775 (2472)
...||...|
T Consensus 308 L~~WREKVF 316 (739)
T PF07111_consen 308 LSRWREKVF 316 (739)
T ss_pred HHHHHHHHH
Confidence 455777655
No 120
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=55.33 E-value=5.2e+02 Score=35.79 Aligned_cols=10 Identities=20% Similarity=0.614 Sum_probs=4.2
Q ss_pred Hhhhhhhhcc
Q 000060 551 VKKKKDVLKQ 560 (2472)
Q Consensus 551 VKKKKEeaKq 560 (2472)
++.|.|..+.
T Consensus 448 LaEkdE~I~~ 457 (961)
T KOG4673|consen 448 LAEKDEIINQ 457 (961)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 121
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=53.67 E-value=5e+02 Score=37.95 Aligned_cols=11 Identities=18% Similarity=0.655 Sum_probs=4.6
Q ss_pred hHhhhcccccCC
Q 000060 268 SEQVRKQEEYFP 279 (2472)
Q Consensus 268 ~e~~rk~~~~~~ 279 (2472)
.|.-|++- ||-
T Consensus 332 iedik~Hp-FF~ 342 (1317)
T KOG0612|consen 332 IEDIKNHP-FFE 342 (1317)
T ss_pred HHHHHhCc-ccc
Confidence 34333433 554
No 122
>PLN03188 kinesin-12 family protein; Provisional
Probab=51.85 E-value=5.6e+02 Score=37.74 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=9.7
Q ss_pred ccCCCccccccccccccCCC
Q 000060 407 ERPSSLNREANKETKFMSSP 426 (2472)
Q Consensus 407 vRP~SRnRgaSk~Sky~sSp 426 (2472)
+.|++..=.+...+..-.+|
T Consensus 671 ~~~~~lsi~p~~~~~~l~~p 690 (1320)
T PLN03188 671 ASPSSLSIVPVEVSPVLKSP 690 (1320)
T ss_pred CCccccccccccccccccCC
Confidence 45555555555555443333
No 123
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=51.77 E-value=4.1e+02 Score=31.53 Aligned_cols=12 Identities=17% Similarity=0.014 Sum_probs=5.3
Q ss_pred CCcccccCCCCC
Q 000060 747 SSRNQFARDNSS 758 (2472)
Q Consensus 747 g~RvhtSRd~sS 758 (2472)
|--+.+++++..
T Consensus 155 GGvvv~~~dG~i 166 (194)
T COG1390 155 GGVVVESRDGKI 166 (194)
T ss_pred ceEEEEeCCCce
Confidence 333344555543
No 124
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.55 E-value=5.1e+02 Score=35.67 Aligned_cols=15 Identities=20% Similarity=0.058 Sum_probs=7.2
Q ss_pred CCCccchhHhhhccc
Q 000060 261 DTGSARRSEQVRKQE 275 (2472)
Q Consensus 261 ~~g~~~~~e~~rk~~ 275 (2472)
.+|-.|.-=-.||+-
T Consensus 210 SLGITCIELAERkPP 224 (948)
T KOG0577|consen 210 SLGITCIELAERKPP 224 (948)
T ss_pred eccchhhhhhhcCCC
Confidence 345555444445543
No 125
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=51.31 E-value=58 Score=42.76 Aligned_cols=10 Identities=20% Similarity=0.155 Sum_probs=4.0
Q ss_pred cCCCcccccc
Q 000060 408 RPSSLNREAN 417 (2472)
Q Consensus 408 RP~SRnRgaS 417 (2472)
.|..-.|-+.
T Consensus 327 ~PFttkRPt~ 336 (591)
T KOG2505|consen 327 FPFTTKRPTI 336 (591)
T ss_pred cCCCCCCCch
Confidence 4443344333
No 126
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=51.29 E-value=1.8e+02 Score=36.03 Aligned_cols=12 Identities=42% Similarity=0.683 Sum_probs=5.8
Q ss_pred hhcccccCCCCC
Q 000060 271 VRKQEEYFPGPL 282 (2472)
Q Consensus 271 ~rk~~~~~~gpl 282 (2472)
+|-..+||-|-+
T Consensus 16 ~~~~~~~f~~~~ 27 (379)
T COG5269 16 ARIHSEYFKGRN 27 (379)
T ss_pred cChHHHHhcchh
Confidence 344445555543
No 127
>KOG1425 consensus Microfibrillar-associated protein MFAP1 [Cytoskeleton]
Probab=50.94 E-value=80 Score=40.09 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=6.5
Q ss_pred CccccccCCCCCC
Q 000060 304 ITDRDRDHGFSKS 316 (2472)
Q Consensus 304 ~~~r~rd~gfsk~ 316 (2472)
+.+|-|++-|.+.
T Consensus 51 ~~~~~~~~a~~ee 63 (430)
T KOG1425|consen 51 IKDRKRDRAEPEE 63 (430)
T ss_pred HHHHHHHhcCcch
Confidence 4455555554444
No 128
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=50.08 E-value=39 Score=48.41 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=5.9
Q ss_pred CCCCCccccccc
Q 000060 376 GREGNMWRASSS 387 (2472)
Q Consensus 376 g~e~nsWR~ssp 387 (2472)
+-+-.+|-++..
T Consensus 1924 ~~~p~s~~a~~~ 1935 (2220)
T KOG3598|consen 1924 AAAPTSWNAPIA 1935 (2220)
T ss_pred hcCCccccccch
Confidence 344455555443
No 129
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=49.81 E-value=5.3e+02 Score=37.28 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=12.7
Q ss_pred CccccCCCcccccccc
Q 000060 404 GICERPSSLNREANKE 419 (2472)
Q Consensus 404 GigvRP~SRnRgaSk~ 419 (2472)
|||.|.+.-+||.+..
T Consensus 85 glG~rAs~tnRgsslK 100 (1074)
T KOG0250|consen 85 GLGGRASATNRGSSLK 100 (1074)
T ss_pred hhccccccccchhhHH
Confidence 6778998899998833
No 130
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=49.68 E-value=34 Score=48.91 Aligned_cols=6 Identities=33% Similarity=0.916 Sum_probs=3.0
Q ss_pred ccccCC
Q 000060 153 GVYVPP 158 (2472)
Q Consensus 153 ~~~~~~ 158 (2472)
..|+-|
T Consensus 1772 ~yyL~P 1777 (2220)
T KOG3598|consen 1772 DYYLAP 1777 (2220)
T ss_pred hhhccC
Confidence 455554
No 131
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=49.18 E-value=2.5e+02 Score=38.86 Aligned_cols=7 Identities=14% Similarity=0.003 Sum_probs=3.1
Q ss_pred cccCCCC
Q 000060 751 QFARDNS 757 (2472)
Q Consensus 751 htSRd~s 757 (2472)
+|+|+..
T Consensus 672 ~t~rt~~ 678 (809)
T KOG0247|consen 672 TTSRTVM 678 (809)
T ss_pred hhhhhhh
Confidence 3444443
No 132
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=48.81 E-value=3e+02 Score=33.27 Aligned_cols=6 Identities=33% Similarity=0.473 Sum_probs=2.4
Q ss_pred hHHhhh
Q 000060 549 GVVKKK 554 (2472)
Q Consensus 549 alVKKK 554 (2472)
+.|+++
T Consensus 68 edikkr 73 (250)
T KOG1150|consen 68 EDIKKR 73 (250)
T ss_pred HHHHHH
Confidence 334443
No 133
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=48.75 E-value=4.6e+02 Score=36.73 Aligned_cols=7 Identities=29% Similarity=0.938 Sum_probs=3.9
Q ss_pred CCCcccc
Q 000060 291 SDWADDE 297 (2472)
Q Consensus 291 sdwadde 297 (2472)
-.||-+-
T Consensus 511 eEWaga~ 517 (1424)
T KOG4572|consen 511 EEWAGAH 517 (1424)
T ss_pred HHHHHhh
Confidence 4576554
No 134
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=45.78 E-value=9.2e+02 Score=34.15 Aligned_cols=7 Identities=43% Similarity=0.558 Sum_probs=3.8
Q ss_pred ccccccc
Q 000060 349 SETGKVS 355 (2472)
Q Consensus 349 ~e~~k~~ 355 (2472)
|=+||.+
T Consensus 34 nGsGKSS 40 (908)
T COG0419 34 NGAGKSS 40 (908)
T ss_pred CCCcHHH
Confidence 4556654
No 135
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=44.78 E-value=84 Score=41.34 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=7.8
Q ss_pred cCCCCCCccccccc
Q 000060 374 REGREGNMWRASSS 387 (2472)
Q Consensus 374 reg~e~nsWR~ssp 387 (2472)
|-||+||+-.+.-|
T Consensus 350 R~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 350 RAGREGNAIVFLNP 363 (567)
T ss_pred hccCccceEEEecc
Confidence 44666665555544
No 136
>PLN03188 kinesin-12 family protein; Provisional
Probab=43.00 E-value=8.6e+02 Score=36.03 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=5.6
Q ss_pred CccccCCCCCCC
Q 000060 70 PKLSVPPPLNLP 81 (2472)
Q Consensus 70 ~klsvp~plnlp 81 (2472)
+||-.|-|.+.|
T Consensus 65 ~~~~sp~p~~pp 76 (1320)
T PLN03188 65 AKLKSPLPPRPP 76 (1320)
T ss_pred ccccCCCCCCCC
Confidence 344444444444
No 137
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=42.51 E-value=1.1e+03 Score=34.22 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=8.0
Q ss_pred cCcccccCCCC-cccccc
Q 000060 769 SWRRDAFESGN-SSTFIT 785 (2472)
Q Consensus 769 SWrR~~fl~q~-sS~F~P 785 (2472)
.|......-.+ -++|+|
T Consensus 1031 aw~~VN~dFG~IFs~LLP 1048 (1174)
T KOG0933|consen 1031 AWEKVNKDFGSIFSTLLP 1048 (1174)
T ss_pred HHHHHhhhHHHHHHHhCC
Confidence 44444332222 566666
No 138
>PF15359 CDV3: Carnitine deficiency-associated protein 3
Probab=41.83 E-value=63 Score=36.07 Aligned_cols=62 Identities=29% Similarity=0.443 Sum_probs=33.6
Q ss_pred CCCCCCccccccccccCcccCCCCccCCCCCCCCCcccccCCCCccCCC-CCCccCCCccccccccc-cCCCccccccc
Q 000060 117 GWTKPGTAVGSDQKINDKVDQGPHSVDGLSKGNDGVGVYVPPSVRSGTV-GPALSSFAPAEKASVLR-GEDFPSLQAAL 193 (2472)
Q Consensus 117 gwtkp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~ek~~vlr-gedfpsl~a~l 193 (2472)
=|.|++++.......- +... --...++|||.||.+|-... -....+ |==|- =+-||||+||.
T Consensus 60 PWnk~~~~~~~~~~~~--v~~~-------~~p~~~~gvY~PP~~R~~~~~r~~~qg------aPdI~Se~~FPSL~sta 123 (129)
T PF15359_consen 60 PWNKSAPAQAPPAPAP--VEEP-------PEPATTSGVYRPPAARNTTTKRKRPQG------APDIFSEEQFPSLQSTA 123 (129)
T ss_pred CCcCCCCCCCCCCCCc--cCCC-------CCCCCCCceecCcccccccccCCCCCC------CCCccccccccchHHHh
Confidence 6999887544444432 1111 11356789999999993331 111111 11111 24799999874
No 139
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=41.01 E-value=4.4e+02 Score=34.74 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=15.3
Q ss_pred ccccc--chhhccccccCccccCCCC
Q 000060 827 GILEP--HMDEFTVSRGQRWNMSGDG 850 (2472)
Q Consensus 827 G~tD~--~LeDYr~~~p~rWnipGD~ 850 (2472)
.|+|- .+.|+-..+..++++|=+.
T Consensus 373 afLd~L~qf~~e~~~k~~~~~lPy~i 398 (447)
T KOG2751|consen 373 AFLDCLKQFADELEKKDTSFNLPYDI 398 (447)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcchh
Confidence 34444 4567777778888777543
No 140
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=40.94 E-value=15 Score=50.62 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=12.9
Q ss_pred cccchhhhhccccccccCCCccccceecc
Q 000060 1109 ENIELTQEFEGIHLEEKGSPHMMSNLVLG 1137 (2472)
Q Consensus 1109 eni~l~~e~~~~hl~~k~~p~~~~~~vlg 1137 (2472)
.+|-|+|-.- +|-..-+..-+||.|..|
T Consensus 853 shlhlhqq~~-~h~~~~~~hpl~dpla~g 880 (982)
T PF03154_consen 853 SHLHLHQQDA-LHQASAAVHPLVDPLAAG 880 (982)
T ss_pred HHHHhhcccc-ccccccCCccccchhccc
Confidence 3444554222 444444434456666554
No 141
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=39.87 E-value=15 Score=50.50 Aligned_cols=8 Identities=13% Similarity=0.696 Sum_probs=3.3
Q ss_pred cccchhhcc
Q 000060 829 LEPHMDEFT 837 (2472)
Q Consensus 829 tD~~LeDYr 837 (2472)
+|. |+-|+
T Consensus 700 ~DP-lL~Y~ 707 (982)
T PF03154_consen 700 MDP-LLAYH 707 (982)
T ss_pred CCH-HHHhh
Confidence 443 44443
No 142
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=38.06 E-value=1.5e+03 Score=32.80 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=9.4
Q ss_pred ecccccccccCCCC
Q 000060 1328 FGQLRYTSPVSQGV 1341 (2472)
Q Consensus 1328 FGQlry~~pi~q~v 1341 (2472)
|-|.|.-+-++||-
T Consensus 1108 ~~qer~er~~Lkg~ 1121 (1243)
T KOG0971|consen 1108 ISQERHERSILKGA 1121 (1243)
T ss_pred HHHHHHHHHHHhHH
Confidence 55677777777764
No 143
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=37.88 E-value=1.2e+03 Score=31.43 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=5.6
Q ss_pred CCCCCccccc
Q 000060 376 GREGNMWRAS 385 (2472)
Q Consensus 376 g~e~nsWR~s 385 (2472)
|...|+|-..
T Consensus 235 ~~~~~Lwicl 244 (493)
T KOG0804|consen 235 GCTEDLWICL 244 (493)
T ss_pred cccccEEEEE
Confidence 5555666554
No 144
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=37.13 E-value=11 Score=49.02 Aligned_cols=8 Identities=25% Similarity=-0.055 Sum_probs=0.0
Q ss_pred CCcccccc
Q 000060 379 GNMWRASS 386 (2472)
Q Consensus 379 ~nsWR~ss 386 (2472)
.+.||.++
T Consensus 236 ~~s~rqlS 243 (495)
T PF12004_consen 236 DFSRRQLS 243 (495)
T ss_dssp --------
T ss_pred chhhhhcc
Confidence 44555554
No 145
>COG5281 Phage-related minor tail protein [Function unknown]
Probab=36.92 E-value=6.5e+02 Score=35.70 Aligned_cols=11 Identities=55% Similarity=0.827 Sum_probs=4.3
Q ss_pred ccccccCCCcc
Q 000060 178 ASVLRGEDFPS 188 (2472)
Q Consensus 178 ~~vlrgedfps 188 (2472)
+.++|+|-|=+
T Consensus 42 ~~~r~~~~~~~ 52 (833)
T COG5281 42 QGVRRGEEFNS 52 (833)
T ss_pred HHHHHHHHHhc
Confidence 33344443333
No 146
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.04 E-value=93 Score=39.16 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=5.6
Q ss_pred ccccCCCCCCCCC
Q 000060 909 RYSMRHPRVLPPP 921 (2472)
Q Consensus 909 RysmRqPRVlPPP 921 (2472)
|=-|.-||-.+-|
T Consensus 403 ~gA~~n~~~anKp 415 (469)
T KOG3878|consen 403 RGAVNNPTAANKP 415 (469)
T ss_pred hhhhcCCCCCCCC
Confidence 3344444444434
No 147
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=35.87 E-value=1.3e+03 Score=31.34 Aligned_cols=9 Identities=11% Similarity=0.331 Sum_probs=3.9
Q ss_pred cccCccccC
Q 000060 839 SRGQRWNMS 847 (2472)
Q Consensus 839 ~~p~rWnip 847 (2472)
+.-..|-.=
T Consensus 400 Dl~~~~H~l 408 (508)
T PF00901_consen 400 DLTVHWHAL 408 (508)
T ss_pred ecccccccc
Confidence 334445443
No 148
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=34.31 E-value=88 Score=42.78 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=18.4
Q ss_pred CcccccCCCCccCCCCCCccC--CCccccccccc
Q 000060 151 GVGVYVPPSVRSGTVGPALSS--FAPAEKASVLR 182 (2472)
Q Consensus 151 ~~~~~~~~s~~~~~~~~~~~~--~~~~ek~~vlr 182 (2472)
..-|..|.|+.|-+|...... -.....++||.
T Consensus 73 s~~vhApvSG~V~~I~~~~~~h~sg~~~~~ivIe 106 (695)
T PRK05035 73 SLPVHAPTSGTVVAIEPHPTAHPSGLAELCVVIE 106 (695)
T ss_pred eeEEeCCCCeEEeeeccccccCCCCcccceEEEc
Confidence 345667777777777643221 23445567776
No 149
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=34.29 E-value=1.5e+02 Score=39.86 Aligned_cols=7 Identities=14% Similarity=0.226 Sum_probs=3.3
Q ss_pred ccccccC
Q 000060 85 KEHERFD 91 (2472)
Q Consensus 85 kehe~~d 91 (2472)
++-|+|+
T Consensus 10 ~~~~~~~ 16 (563)
T KOG2341|consen 10 ETDEGVS 16 (563)
T ss_pred ccccccc
Confidence 3444444
No 150
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=33.43 E-value=1.7e+02 Score=38.75 Aligned_cols=9 Identities=33% Similarity=0.549 Sum_probs=4.9
Q ss_pred CcCCCCCCC
Q 000060 489 SKSSFSSGG 497 (2472)
Q Consensus 489 SKssfs~G~ 497 (2472)
++..||.|.
T Consensus 305 sr~l~F~~~ 313 (591)
T KOG2505|consen 305 SRNLFFEGD 313 (591)
T ss_pred ccceeecCC
Confidence 344666654
No 151
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.75 E-value=8.9e+02 Score=31.20 Aligned_cols=7 Identities=29% Similarity=0.212 Sum_probs=3.4
Q ss_pred CCCCCCc
Q 000060 537 FDGRDPF 543 (2472)
Q Consensus 537 ~dGrDP~ 543 (2472)
..|+|.-
T Consensus 86 v~GnDr~ 92 (469)
T KOG3878|consen 86 VIGNDRQ 92 (469)
T ss_pred cccChHH
Confidence 4455544
No 152
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=32.49 E-value=1.1e+03 Score=34.38 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=4.4
Q ss_pred CCCCCCCCCCC
Q 000060 501 PHNDPMHNFSR 511 (2472)
Q Consensus 501 L~NdpllNFgR 511 (2472)
|+.|-...|.+
T Consensus 147 LpQDkV~EFa~ 157 (1072)
T KOG0979|consen 147 LPQDKVKEFAR 157 (1072)
T ss_pred ccHHHHHHHHc
Confidence 34444444433
No 153
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=32.29 E-value=1.5e+02 Score=39.92 Aligned_cols=8 Identities=38% Similarity=0.264 Sum_probs=3.2
Q ss_pred cccccCCC
Q 000060 749 RNQFARDN 756 (2472)
Q Consensus 749 RvhtSRd~ 756 (2472)
|..+-||.
T Consensus 534 R~ItlRDl 541 (563)
T KOG2341|consen 534 RTITLRDL 541 (563)
T ss_pred cceeHHHH
Confidence 33344443
No 154
>KOG2823 consensus Cellular protein (glioma tumor suppressor candidate region gene 2) [General function prediction only]
Probab=32.28 E-value=1.7e+02 Score=38.23 Aligned_cols=14 Identities=7% Similarity=0.062 Sum_probs=5.7
Q ss_pred CCCCcccchhhHHh
Q 000060 539 GRDPFSAGLVGVVK 552 (2472)
Q Consensus 539 GrDP~t~smialVK 552 (2472)
.-+|.+.+-..+|.
T Consensus 201 SYNP~~e~hq~ll~ 214 (438)
T KOG2823|consen 201 SYNPTFEDHQELLA 214 (438)
T ss_pred CCCCChHHHHHHHH
Confidence 34444333334443
No 155
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=32.05 E-value=1.4e+03 Score=30.76 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=6.3
Q ss_pred cCCCCCcc--cccccc
Q 000060 714 ADVGDWED--GERMVE 727 (2472)
Q Consensus 714 kDl~D~ED--~ERmvD 727 (2472)
+-.+.|-+ .+|+++
T Consensus 200 K~rG~WGE~qLerILE 215 (475)
T PRK10361 200 KTQGNWGEVVLTRVLE 215 (475)
T ss_pred CcCcchHHHHHHHHHH
Confidence 34455644 344444
No 156
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=31.43 E-value=77 Score=40.06 Aligned_cols=57 Identities=32% Similarity=0.646 Sum_probs=36.6
Q ss_pred ccccCCCCCCCcccccccccCCCCCCCCC-----------------C----------CCCCCCCCCCCCCCCCCCCCCCc
Q 000060 71 KLSVPPPLNLPSLRKEHERFDSSGSNGGP-----------------A----------GGGVSGAGQRPGSSGTGWTKPGT 123 (2472)
Q Consensus 71 klsvp~plnlpslrkehe~~ds~g~~~g~-----------------~----------~~~~~g~g~rp~ssg~gwtkp~~ 123 (2472)
.-.||||-..||.++...-||--|+-||. . ||-|+|-|.+-...|.||-+|+.
T Consensus 310 nE~~ppppempswqqqq~~~~~~ggrgggkg~f~~~~~~~~~~~eqgg~Rgg~Gg~~gGrGgGRGggG~GGGggyqqp~~ 389 (465)
T KOG3973|consen 310 NEMVPPPPEMPSWQQQQHTFDRQGGRGGGKGTFDRPKTHEEQVLEQGGSRGGSGGNWGGRGGGRGGGGRGGGGGYQQPQQ 389 (465)
T ss_pred ccCCCCCCCCCcHHHhcCCCCCCCCcCCCCCCCcCccccccchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCchh
Confidence 34589999999999988888866654333 0 11122333344556689998876
Q ss_pred cccc
Q 000060 124 AVGS 127 (2472)
Q Consensus 124 ~~~~ 127 (2472)
--.+
T Consensus 390 ~~~~ 393 (465)
T KOG3973|consen 390 QQQQ 393 (465)
T ss_pred hhhc
Confidence 5544
No 157
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=31.25 E-value=2.5e+02 Score=35.70 Aligned_cols=15 Identities=13% Similarity=0.116 Sum_probs=7.2
Q ss_pred CCCCcccchhhHHhh
Q 000060 539 GRDPFSAGLVGVVKK 553 (2472)
Q Consensus 539 GrDP~t~smialVKK 553 (2472)
.-+|...+=.++|.+
T Consensus 186 SYNP~~edhqelL~~ 200 (387)
T PF07767_consen 186 SYNPSFEDHQELLAK 200 (387)
T ss_pred CCCcCHHHHHHHHHH
Confidence 555554444444443
No 158
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=31.25 E-value=1.6e+02 Score=36.97 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=6.3
Q ss_pred CCCCCeeeccCC
Q 000060 279 PGPLPLVRLKPR 290 (2472)
Q Consensus 279 ~gplplvrl~~~ 290 (2472)
-|+-|+-||++-
T Consensus 25 ~g~~~~~h~~y~ 36 (410)
T KOG4715|consen 25 GGYNPYTHLAYS 36 (410)
T ss_pred CCCCcchhhhcc
Confidence 444455566553
No 159
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=30.76 E-value=2.8e+02 Score=37.26 Aligned_cols=6 Identities=33% Similarity=0.363 Sum_probs=2.8
Q ss_pred cccccc
Q 000060 412 LNREAN 417 (2472)
Q Consensus 412 RnRgaS 417 (2472)
-+|++-
T Consensus 357 k~RQTm 362 (691)
T KOG0338|consen 357 KNRQTM 362 (691)
T ss_pred ccccce
Confidence 445444
No 160
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=29.89 E-value=2.1e+02 Score=36.11 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=7.3
Q ss_pred ccccCCCCcCCCCCCCCCC
Q 000060 482 AFQRSSASKSSFSSGGRGF 500 (2472)
Q Consensus 482 SfQnsS~SKssfs~G~kGl 500 (2472)
+|||+.+. .+.+++++.
T Consensus 131 ayh~sp~y--~ayinaKsr 147 (410)
T KOG4715|consen 131 AYHNSPAY--LAYINAKSR 147 (410)
T ss_pred HhhCCchH--HHHhhhhhh
Confidence 45544433 334444443
No 161
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=29.44 E-value=1.1e+02 Score=41.59 Aligned_cols=7 Identities=43% Similarity=0.914 Sum_probs=2.9
Q ss_pred ccCCCCC
Q 000060 1317 HMHPSQP 1323 (2472)
Q Consensus 1317 hmhps~p 1323 (2472)
+||-.||
T Consensus 466 qIH~tqp 472 (902)
T KOG0923|consen 466 QIHLTQP 472 (902)
T ss_pred eeEeccC
Confidence 3444443
No 162
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=29.15 E-value=82 Score=43.06 Aligned_cols=14 Identities=21% Similarity=0.225 Sum_probs=6.5
Q ss_pred cchhhHHhhhhhhh
Q 000060 545 AGLVGVVKKKKDVL 558 (2472)
Q Consensus 545 ~smialVKKKKEea 558 (2472)
..+...++.-+.+.
T Consensus 425 Iplv~~~r~aK~~i 438 (695)
T PRK05035 425 IPLVQYYRQAKAEI 438 (695)
T ss_pred CcHHHHHHHHHHHH
Confidence 34455555544433
No 163
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=29.08 E-value=9.3e+02 Score=33.91 Aligned_cols=6 Identities=17% Similarity=0.517 Sum_probs=2.2
Q ss_pred cccccc
Q 000060 354 VSSSEV 359 (2472)
Q Consensus 354 ~~~~e~ 359 (2472)
|..|++
T Consensus 328 i~vSql 333 (809)
T KOG0247|consen 328 ITVSQL 333 (809)
T ss_pred eeEEee
Confidence 333333
No 164
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=28.15 E-value=2.2e+03 Score=31.68 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=19.2
Q ss_pred CCCCccccccCCCCCcccccccccccc
Q 000060 1355 NVPANFSLNQNAGVSQPIQHVQQTSTH 1381 (2472)
Q Consensus 1355 ~~~~~~~~nqn~~~~~~~~~~~~~~~~ 1381 (2472)
+-++-++.-||++.+=||-+..-++.+
T Consensus 1108 ~~~pa~t~~q~~~~sg~va~~tP~~s~ 1134 (1195)
T KOG4643|consen 1108 NRSPAHTIEQNSSFSGPVAHSTPNSSI 1134 (1195)
T ss_pred CCCcccccccCCCCCCccccCCCcchh
Confidence 445667888999998888776555443
No 165
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=27.41 E-value=2e+03 Score=31.64 Aligned_cols=7 Identities=29% Similarity=0.601 Sum_probs=4.0
Q ss_pred ccccccc
Q 000060 349 SETGKVS 355 (2472)
Q Consensus 349 ~e~~k~~ 355 (2472)
|-+||.+
T Consensus 39 tGaGKSt 45 (1047)
T PRK10246 39 TGAGKTT 45 (1047)
T ss_pred CCCCHHH
Confidence 5556654
No 166
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=27.38 E-value=43 Score=42.17 Aligned_cols=20 Identities=45% Similarity=0.790 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCCCCCCce
Q 000060 36 HSGYYGSNRARPTGGGGGGM 55 (2472)
Q Consensus 36 ~~g~~~~~~~~~~~~~gggm 55 (2472)
+||+.|..+|.+||||+||+
T Consensus 441 gggr~gggrgrgggggrg~y 460 (465)
T KOG3973|consen 441 GGGRDGGGRGRGGGGGRGGY 460 (465)
T ss_pred CCCCCCCCCCCCCCCCCccc
Confidence 44444444444455555553
No 167
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=27.33 E-value=1.1e+03 Score=29.14 Aligned_cols=7 Identities=43% Similarity=0.918 Sum_probs=4.5
Q ss_pred ccCCccc
Q 000060 478 FRGDAFQ 484 (2472)
Q Consensus 478 YrG~SfQ 484 (2472)
|||++--
T Consensus 35 yRGGALL 41 (322)
T KOG2962|consen 35 YRGGALL 41 (322)
T ss_pred Eecceee
Confidence 6777654
No 168
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=27.01 E-value=2e+03 Score=32.02 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCCccccccCcCCcc-ccccccccccccCCCCCcccCCCcCC
Q 000060 327 PRPSVLPHKPAHNVFERWGQRDSE-TGKVSSSEVARVDPFGRDIRAPSREG 376 (2472)
Q Consensus 327 p~~~~~p~k~~~~~~~~~g~r~~e-~~k~~~~e~~~~~~~~~d~~~~~reg 376 (2472)
+-.||+| +.=+.+||.--+-..| .=||+-=|+|--+ ..|+-+++=.+
T Consensus 159 ~~aGIIP-Ral~~IFd~Le~~~~EYsvKVSfLELYNEE--l~DLLa~~~~~ 206 (1041)
T KOG0243|consen 159 SEAGIIP-RALRQIFDTLEAQGAEYSVKVSFLELYNEE--LTDLLASEDTS 206 (1041)
T ss_pred ccCCcch-HHHHHHHHHHHhcCCeEEEEEEehhhhhHH--HHHhcCCcccc
Confidence 4577888 4455677754432222 2345444444333 23666555443
No 169
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.47 E-value=43 Score=46.17 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=12.9
Q ss_pred cCCCCCcccccchhhhhccccccccC
Q 000060 1101 EDVPEGDDENIELTQEFEGIHLEEKG 1126 (2472)
Q Consensus 1101 edei~~~deni~l~~e~~~~hl~~k~ 1126 (2472)
+|-..+.++-+++.++.-+.-++|.+
T Consensus 1426 dd~D~dd~~e~~~~D~~d~~~s~eDn 1451 (1516)
T KOG1832|consen 1426 DDLDRDDGLEGDNSDSGDDDLSSEDN 1451 (1516)
T ss_pred cccccccchhcccccccccccccccc
Confidence 33333335566666665554444433
No 170
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=25.68 E-value=3.6e+02 Score=37.20 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=27.4
Q ss_pred cccCCCCCcccccchhhhhcc--ccccccCCCccccceecccccceeecC
Q 000060 1099 QEEDVPEGDDENIELTQEFEG--IHLEEKGSPHMMSNLVLGFNEGVEVPM 1146 (2472)
Q Consensus 1099 ~~edei~~~deni~l~~e~~~--~hl~~k~~p~~~~~~vlgf~egvev~m 1146 (2472)
.+.+-|.++=..=|...||+. .-+.++.-|..+|..+-|.-.=+=.+|
T Consensus 584 ~q~~li~~AFA~DdV~~eF~~eK~~~~e~e~pk~~~~~LPGWG~W~G~g~ 633 (735)
T PF04615_consen 584 EQRELIREAFAGDDVVAEFEKEKEEEIEEEKPKEIDLTLPGWGSWAGPGI 633 (735)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhhhCCcccccCCCCcccccCCCc
Confidence 345556666233355677764 223355668788887788765333333
No 171
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=25.64 E-value=1.8e+03 Score=29.88 Aligned_cols=7 Identities=0% Similarity=0.126 Sum_probs=3.2
Q ss_pred chhhccc
Q 000060 832 HMDEFTV 838 (2472)
Q Consensus 832 ~LeDYr~ 838 (2472)
.|..|..
T Consensus 260 pL~aY~r 266 (475)
T PRK10361 260 TLVAYER 266 (475)
T ss_pred CHHHHHH
Confidence 3455543
No 172
>COG4499 Predicted membrane protein [Function unknown]
Probab=25.24 E-value=1.3e+02 Score=38.84 Aligned_cols=11 Identities=27% Similarity=0.585 Sum_probs=5.9
Q ss_pred CCCCCCCCCCC
Q 000060 323 DFDMPRPSVLP 333 (2472)
Q Consensus 323 ~fd~p~~~~~p 333 (2472)
-|-||+.++=+
T Consensus 26 t~tf~ke~ik~ 36 (434)
T COG4499 26 TFTFPKESIKL 36 (434)
T ss_pred eEEeecccccH
Confidence 34456655554
No 173
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=25.03 E-value=2e+03 Score=30.29 Aligned_cols=8 Identities=25% Similarity=0.671 Sum_probs=5.2
Q ss_pred CCCCCCcc
Q 000060 537 FDGRDPFS 544 (2472)
Q Consensus 537 ~dGrDP~t 544 (2472)
++.+||.+
T Consensus 97 ~eaPDP~p 104 (629)
T KOG0963|consen 97 IEAPDPVP 104 (629)
T ss_pred hhCCCCch
Confidence 35778873
No 174
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=24.39 E-value=2e+02 Score=36.75 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=6.7
Q ss_pred ccccCCCCCCeeecc
Q 000060 274 QEEYFPGPLPLVRLK 288 (2472)
Q Consensus 274 ~~~~~~gplplvrl~ 288 (2472)
.++.|+-| |||-||
T Consensus 128 ~~~~Fk~p-PLlVmN 141 (405)
T KOG2963|consen 128 PNDLFKSP-PLLVLN 141 (405)
T ss_pred chhhccCC-CEEEEc
Confidence 34444444 555554
No 175
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=22.62 E-value=9.9e+02 Score=25.80 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000060 604 EEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQ 683 (2472)
Q Consensus 604 EEEReReaREEEERRRReEEEeRErerREEKERlEAERKEEEERKRrEEEErRREEEEERRREEEEQRRrEEEEReKKrQ 683 (2472)
++-..+....+++.+..+++.+.+...-.+..+.++.+..++......++..+..+..++.-+.++++-..+.+.+-...
T Consensus 2 ~e~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L 81 (103)
T PRK08404 2 EDVIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEEL 81 (103)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhcc
Q 000060 684 AEAAKSDSNS 693 (2472)
Q Consensus 684 aEeEKrrkeA 693 (2472)
....+.+...
T Consensus 82 ~~~a~~k~~~ 91 (103)
T PRK08404 82 KVKAEENFET 91 (103)
T ss_pred HHHHHHHHHH
No 176
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.59 E-value=2.7e+03 Score=31.19 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000060 573 AELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREE 652 (2472)
Q Consensus 573 aELERrrEeeEEEReReEEEQEReEEEaRKEEEEReReaREEEERRRReEEEeRErerREEKERlEAERKEEEERKRrEE 652 (2472)
.+++......+.+......+-....++..+.+.+..+.+....+.+.....-....+.+...+..-.+-.++-+..+.+-
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~ 904 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREI 904 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhccchhhhh
Q 000060 653 ERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADEKSSGLAKE 707 (2472)
Q Consensus 653 EErRREEEEERRREEEEQRRrEEEEReKKrQaEeEKrrkeAEakakEKaeq~kkE 707 (2472)
++.+.+.+..+......+.+.++.....+.+.++.+.+...-...-........+
T Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 959 (1311)
T TIGR00606 905 KDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKD 959 (1311)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 177
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=22.51 E-value=1.2e+02 Score=41.48 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=9.7
Q ss_pred CCCCCCCccccccccc
Q 000060 116 TGWTKPGTAVGSDQKI 131 (2472)
Q Consensus 116 ~gwtkp~~~~~~~~~~ 131 (2472)
.-||.++.+-++++.-
T Consensus 72 k~wte~edaedD~d~~ 87 (1185)
T KOG0388|consen 72 KRWTEAEDAEDDDDLY 87 (1185)
T ss_pred cccCChhhcccCchhc
Confidence 4577776665555544
No 178
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.89 E-value=2.2e+03 Score=29.65 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=15.0
Q ss_pred hhhhcccccccccCCCcccCCCCCcccccch
Q 000060 1083 ERLHEQEEYDEDEDGYQEEDVPEGDDENIEL 1113 (2472)
Q Consensus 1083 e~~~eqeeyded~d~y~~edei~~~deni~l 1113 (2472)
.++++|.-|.+..--| |.+|.+-++.+-|
T Consensus 425 ~~l~~~~n~tde~~~~--e~evq~l~~kl~l 453 (772)
T KOG0999|consen 425 KALYHQLNYTDEKVQY--EKEVQELVEKLRL 453 (772)
T ss_pred HHHHHhhcccchhhhH--HHHHHHHHHHHHH
Confidence 3456666665544444 5555555544433
No 179
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.81 E-value=1.2e+03 Score=31.69 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=10.6
Q ss_pred ccccccccccccccCCCCCc
Q 000060 349 SETGKVSSSEVARVDPFGRD 368 (2472)
Q Consensus 349 ~e~~k~~~~e~~~~~~~~~d 368 (2472)
|.+||.+--.-...==||+.
T Consensus 37 Ng~GKttll~ai~~~LyG~~ 56 (650)
T TIGR03185 37 NGAGKTTLLDAIQLALYGKR 56 (650)
T ss_pred CCCCHHHHHHHHHHHhcCcc
Confidence 77888764443333344443
No 180
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=21.32 E-value=2.3e+03 Score=31.66 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=9.0
Q ss_pred cceeEeeecCCccCCC
Q 000060 1658 SGVVRVFEQPGIEAPS 1673 (2472)
Q Consensus 1658 sg~vrvf~q~Gie~ps 1673 (2472)
-.|.+.|++.|||.|-
T Consensus 1063 ~~I~~~F~~~GIeIPf 1078 (1109)
T PRK10929 1063 QLILAGFREHGIDMPF 1078 (1109)
T ss_pred HHHHHHHHHCCCcCCC
Confidence 3455556666666554
No 181
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.17 E-value=3.5e+02 Score=37.38 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=17.6
Q ss_pred EeecccCCC----CCCCCCCcee---eccccCcc
Q 000060 1280 QFGLFSGPS----LIPSPFPAIQ---IGSIQMPL 1306 (2472)
Q Consensus 1280 qFGlfsGps----LipspvPAIQ---IGSIQmPl 1306 (2472)
=|-|+++=+ |=..+||-|| .|++=+=|
T Consensus 599 CfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~L 632 (902)
T KOG0923|consen 599 CFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLL 632 (902)
T ss_pred eEEeechhhhhhhhccCCCcceeeccchhHHHHH
Confidence 377888643 6678899998 34444433
No 182
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=21.12 E-value=2.3e+03 Score=29.46 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=9.4
Q ss_pred ccccCCCCCCCCCc
Q 000060 1007 SVSSAPDSPVHLSH 1020 (2472)
Q Consensus 1007 Svsspp~sp~Hlsh 1020 (2472)
.|.+||++-|+-.+
T Consensus 503 ~~~~Pp~~lV~~~~ 516 (546)
T KOG0977|consen 503 AVHNPPESLVMKGE 516 (546)
T ss_pred CccCCCcceeecCC
Confidence 46778888777433
No 183
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=21.09 E-value=8.2e+02 Score=33.43 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=6.5
Q ss_pred hhhccccccCcc
Q 000060 833 MDEFTVSRGQRW 844 (2472)
Q Consensus 833 LeDYr~~~p~rW 844 (2472)
-+.|++++.+--
T Consensus 515 REQYrqVreHV~ 526 (832)
T KOG2077|consen 515 REQYRQVREHVQ 526 (832)
T ss_pred HHHHHHHHHHhh
Confidence 355666665543
No 184
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.98 E-value=1.2e+02 Score=37.86 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000060 641 RKAEEQRIAREEERQRIIMEEERRKHAAKQ 670 (2472)
Q Consensus 641 RKEEEERKRrEEEErRREEEEERRREEEEQ 670 (2472)
+++++|.+++|||-+||++|-+||+++...
T Consensus 63 ~~kq~eL~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 63 AKKQAELLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
No 185
>PF15556 Zwint: ZW10 interactor
Probab=20.96 E-value=1.6e+03 Score=27.55 Aligned_cols=7 Identities=43% Similarity=0.823 Sum_probs=4.8
Q ss_pred CCCCCCc
Q 000060 537 FDGRDPF 543 (2472)
Q Consensus 537 ~dGrDP~ 543 (2472)
.-|.||+
T Consensus 45 ~QgldpL 51 (252)
T PF15556_consen 45 AQGLDPL 51 (252)
T ss_pred cccCCcc
Confidence 5577777
No 186
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=20.91 E-value=8.9e+02 Score=33.59 Aligned_cols=7 Identities=29% Similarity=0.615 Sum_probs=2.9
Q ss_pred cceeccc
Q 000060 1132 SNLVLGF 1138 (2472)
Q Consensus 1132 ~~~vlgf 1138 (2472)
|.||-=|
T Consensus 596 DdV~~eF 602 (735)
T PF04615_consen 596 DDVVAEF 602 (735)
T ss_pred CchHHHH
Confidence 4444333
No 187
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=20.87 E-value=9.6e+02 Score=30.18 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 000060 618 RRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSN 692 (2472)
Q Consensus 618 RRReEEEeRErerREEKERlEAERKEEEERKRrEEEErRREEEEERRREEEEQRRrEEEEReKKrQaEeEKrrke 692 (2472)
|.+++|-.+.++.....+..+.+++..+++.+..+++....+|+.++++++-++-++...+.+.+..+.+.+..+
T Consensus 172 R~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~ 246 (269)
T PF05278_consen 172 RSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTR 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 188
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair]
Probab=20.77 E-value=49 Score=42.20 Aligned_cols=34 Identities=15% Similarity=0.043 Sum_probs=21.3
Q ss_pred hhhHHHHHHHhhhhhccccchhhhhhhhhccccC
Q 000060 1202 ILQETDKAIQDLVVQQDNTQLSAASELMDHLNAN 1235 (2472)
Q Consensus 1202 ~~qe~eka~q~l~i~~~~~~~~~~~~~~~~~~a~ 1235 (2472)
..-+.|.+|...-||--+-|+-+.-.++.|-+.+
T Consensus 490 h~~~~e~~lk~~~~~y~~~~~~a~l~~k~~qV~s 523 (555)
T KOG2457|consen 490 HMVEKEQILKCRCIQYLKHTSKAYLFLKSHQVES 523 (555)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccC
Confidence 5566777888877774445555555666555544
No 189
>PF07415 Herpes_LMP2: Gammaherpesvirus latent membrane protein (LMP2) protein; InterPro: IPR010881 This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) is a human gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear [].; GO: 0019042 latent virus infection, 0033644 host cell membrane; PDB: 2JO9_B 1UXW_C.
Probab=20.76 E-value=34 Score=43.03 Aligned_cols=41 Identities=34% Similarity=0.563 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC
Q 000060 93 SGSNGGPAGGGVSGAGQRPGSSGTGWTKPGTAVGSDQKIND 133 (2472)
Q Consensus 93 ~g~~~g~~~~~~~g~g~rp~ssg~gwtkp~~~~~~~~~~~~ 133 (2472)
-+++|||-|+-++++-.-|+++|.-|..|+.+..++.+.++
T Consensus 14 p~~~~~~dg~e~~~~~~~ps~~~~~~~~~~~p~~~d~~~~~ 54 (489)
T PF07415_consen 14 PSPHGGPDGYEGSNNSQYPSSFGSSWNSPGPPNYEDYPSNS 54 (489)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccCCCCC
Confidence 35678899999999999999999999999998888877764
No 190
>PLN02372 violaxanthin de-epoxidase
Probab=20.71 E-value=1.1e+03 Score=31.36 Aligned_cols=7 Identities=29% Similarity=0.890 Sum_probs=4.2
Q ss_pred ccccccc
Q 000060 381 MWRASSS 387 (2472)
Q Consensus 381 sWR~ssp 387 (2472)
.||+..|
T Consensus 243 ~wRv~tp 249 (455)
T PLN02372 243 NWRINTP 249 (455)
T ss_pred EEEEecC
Confidence 4666655
No 191
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=20.28 E-value=2.8e+03 Score=30.82 Aligned_cols=6 Identities=33% Similarity=0.462 Sum_probs=4.0
Q ss_pred ccchhh
Q 000060 1110 NIELTQ 1115 (2472)
Q Consensus 1110 ni~l~~ 1115 (2472)
.|||++
T Consensus 770 ~ldl~~ 775 (1109)
T PRK10929 770 VIDLDA 775 (1109)
T ss_pred ccCHHH
Confidence 577765
No 192
>PRK13203 ureB urease subunit beta; Reviewed
Probab=20.06 E-value=39 Score=36.47 Aligned_cols=14 Identities=43% Similarity=0.892 Sum_probs=12.5
Q ss_pred CCCCCccccCccCC
Q 000060 2078 PSHFPLYEMNPLLG 2091 (2472)
Q Consensus 2078 ~~~f~~~emn~mlg 2091 (2472)
=|||.|||.|+.|=
T Consensus 37 GSH~HF~E~N~aL~ 50 (102)
T PRK13203 37 GSHYHFFEVNPALS 50 (102)
T ss_pred ccccchhhcCcchh
Confidence 48999999999986
Done!