Query 000060
Match_columns 2472
No_of_seqs 299 out of 1425
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 11:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000060.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000060hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ejxb_ b.85.3.1 (B:) Urease, 17.8 17 0.0012 35.3 0.9 13 2079-2091 38-50 (101)
2 d1e9ya1 b.85.3.1 (A:106-238) U 15.3 21 0.0015 35.9 0.9 13 2079-2091 38-50 (133)
3 d4ubpb_ b.85.3.1 (B:) Urease, 14.8 22 0.0016 35.4 0.9 13 2079-2091 40-52 (122)
4 d1k47a2 d.58.26.4 (A:195-329) 7.6 73 0.0053 30.6 1.8 14 48-61 98-111 (135)
5 d1v9da_ a.207.1.1 (A:) Diaphan 3.7 4.4E+02 0.032 28.2 5.3 31 611-641 301-331 (332)
6 d1qvra2 c.37.1.20 (A:149-535) 3.5 1.3E+03 0.098 25.1 9.4 110 576-685 253-362 (387)
7 d2ap3a1 a.24.27.1 (A:12-196) H 3.2 1.3E+03 0.094 20.1 13.7 153 547-699 31-183 (185)
8 d1qvra2 c.37.1.20 (A:149-535) 3.1 2E+03 0.14 23.6 10.4 110 579-688 253-362 (387)
9 d1v9da_ a.207.1.1 (A:) Diaphan 3.0 6.5E+02 0.048 26.8 5.9 34 635-668 298-331 (332)
10 d2drwa1 e.3.1.1 (A:2-363) D-Am 2.7 1.2E+02 0.0091 32.3 -0.6 93 1981-2090 21-118 (362)
No 1
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]}
Probab=17.84 E-value=17 Score=35.25 Aligned_cols=13 Identities=46% Similarity=0.777 Sum_probs=11.8
Q ss_pred CCCCccccCccCC
Q 000060 2079 SHFPLYEMNPLLG 2091 (2472)
Q Consensus 2079 ~~f~~~emn~mlg 2091 (2472)
|||.|||.|+.|=
T Consensus 38 SH~HF~E~N~aL~ 50 (101)
T d1ejxb_ 38 SHYHFAEVNPALK 50 (101)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChHHcCcccc
Confidence 8999999999885
No 2
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]}
Probab=15.31 E-value=21 Score=35.94 Aligned_cols=13 Identities=46% Similarity=0.818 Sum_probs=11.9
Q ss_pred CCCCccccCccCC
Q 000060 2079 SHFPLYEMNPLLG 2091 (2472)
Q Consensus 2079 ~~f~~~emn~mlg 2091 (2472)
|||.|||.|+.|=
T Consensus 38 SH~HF~E~N~aL~ 50 (133)
T d1e9ya1 38 SHFHFFEVNRCLD 50 (133)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChhhcCcccc
Confidence 8999999999985
No 3
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}
Probab=14.80 E-value=22 Score=35.36 Aligned_cols=13 Identities=38% Similarity=0.365 Sum_probs=11.9
Q ss_pred CCCCccccCccCC
Q 000060 2079 SHFPLYEMNPLLG 2091 (2472)
Q Consensus 2079 ~~f~~~emn~mlg 2091 (2472)
|||.|||.|+.|-
T Consensus 40 SH~HF~E~N~aL~ 52 (122)
T d4ubpb_ 40 SHIHFVEVNKELL 52 (122)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChhhcCcccc
Confidence 8999999999985
No 4
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=7.61 E-value=73 Score=30.60 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=0.0
Q ss_pred CCCCCCceEEeecc
Q 000060 48 TGGGGGGMLVLSRP 61 (2472)
Q Consensus 48 ~~~~gggm~vlsr~ 61 (2472)
|+||||+|++|.++
T Consensus 98 GaGgGG~~i~l~~~ 111 (135)
T d1k47a2 98 GAGGGDCGIALSFD 111 (135)
T ss_dssp SSCSSSEEEEEECS
T ss_pred cCcCCCeEEEEecC
No 5
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.69 E-value=4.4e+02 Score=28.22 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000060 611 AREQEEQRRRLEEETREAVWRAEQEQLEATR 641 (2472)
Q Consensus 611 aREEEERRRReEEEeRErerREEKERlEAER 641 (2472)
.+..++.+++++++++.+++++++++.+++|
T Consensus 301 ~~a~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 331 (332)
T d1v9da_ 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 6
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=3.47 E-value=1.3e+03 Score=25.07 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000060 576 ERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQ 655 (2472)
Q Consensus 576 ERrrEeeEEEReReEEEQEReEEEaRKEEEEReReaREEEERRRReEEEeRErerREEKERlEAERKEEEERKRrEEEEr 655 (2472)
++....+.+-.+-..+...-.++......++......+.++.+.....-..+-+.+.+.-....+-+++-+..+.+.+..
T Consensus 253 ~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 253 EEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000060 656 RIIMEEERRKHAAKQKLLELEERIAKRQAE 685 (2472)
Q Consensus 656 RREEEEERRREEEEQRRrEEEEReKKrQaE 685 (2472)
.+...-++..+.......+.+++.++.+++
T Consensus 333 ~r~gd~e~AaeL~y~~ip~le~el~~l~~~ 362 (387)
T d1qvra2 333 ERQYDLNRAAELRYGELPKLEAEVEALSEK 362 (387)
T ss_dssp TTTTCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHhhchHHHHHHHHHHHHHH
No 7
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=3.23 E-value=1.3e+03 Score=20.05 Aligned_cols=153 Identities=5% Similarity=-0.047 Sum_probs=0.0
Q ss_pred hhhHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000060 547 LVGVVKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETR 626 (2472)
Q Consensus 547 mialVKKKKEeaKq~E~EDklREEaEaELERrrEeeEEEReReEEEQEReEEEaRKEEEEReReaREEEERRRReEEEeR 626 (2472)
+..+..................................................................+.........
T Consensus 31 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (185)
T d2ap3a1 31 IAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKEVKQLDDV 110 (185)
T ss_dssp HHHHHHHHHTTTTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhh
Q 000060 627 EAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADE 699 (2472)
Q Consensus 627 ErerREEKERlEAERKEEEERKRrEEEErRREEEEERRREEEEQRRrEEEEReKKrQaEeEKrrkeAEakakE 699 (2472)
........+......+..........+...........................+...+..+...........
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ek~~ 183 (185)
T d2ap3a1 111 LKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQD 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 8
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=3.11 E-value=2e+03 Score=23.56 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000060 579 QKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRII 658 (2472)
Q Consensus 579 rEeeEEEReReEEEQEReEEEaRKEEEEReReaREEEERRRReEEEeRErerREEKERlEAERKEEEERKRrEEEErRRE 658 (2472)
++..+.+++...-+.++..-.+.+..+..++....+.+....+++.....++-..++..-.+.++..++......+...+
T Consensus 253 ~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 253 EEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000060 659 MEEERRKHAAKQKLLELEERIAKRQAEAAK 688 (2472)
Q Consensus 659 EEEERRREEEEQRRrEEEEReKKrQaEeEK 688 (2472)
+.+..-.++.+..-.+...-+++.++..++
T Consensus 333 ~r~gd~e~AaeL~y~~ip~le~el~~l~~~ 362 (387)
T d1qvra2 333 ERQYDLNRAAELRYGELPKLEAEVEALSEK 362 (387)
T ss_dssp TTTTCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHhhchHHHHHHHHHHHHHH
No 9
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.03 E-value=6.5e+02 Score=26.77 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000060 635 EQLEATRKAEEQRIAREEERQRIIMEEERRKHAA 668 (2472)
Q Consensus 635 ERlEAERKEEEERKRrEEEErRREEEEERRREEE 668 (2472)
...++.+++.+++++++++.+|+++++++++++.
T Consensus 298 ~~~~~a~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 331 (332)
T d1v9da_ 298 NMFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 10
>d2drwa1 e.3.1.1 (A:2-363) D-Amino acid amidase DaaA {Ochrobactrum anthropi [TaxId: 529]}
Probab=2.74 E-value=1.2e+02 Score=32.33 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=0.0
Q ss_pred hhhhhhcccCcccccCCCCcccccCccccccCccCCCccccCCCccccCcccccccccceecccCc---ccccCCCcccC
Q 000060 1981 AIAVAAISSDEVVGNGLGTGSVSASETKNFGGADTDGIRAAGGDADQQSASQSRAEESLSVALPAD---LSVETPPISLW 2057 (2472)
Q Consensus 1981 AvAVAAIs~De~vg~~~~~~~~~~~~~k~fg~~~~~~~~~ag~~~~~~~~~qS~~ee~l~vaLPAD---LSVdtp~is~w 2057 (2472)
.++||++.++++|- .+.||-+|++...++-...--..+|-|+.=-.+.|.+=.| |+.|+|=...|
T Consensus 21 g~~v~v~~~g~~v~------------~~~~G~ad~~~~~p~t~dt~f~i~SvsK~~ta~~i~~lve~G~l~ldd~v~~yl 88 (362)
T d2drwa1 21 GVSLALCLPGEETS------------LYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWF 88 (362)
T ss_dssp EEEEEEECTTSCEE------------EEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGGTC
T ss_pred eEEEEEEECCEEEE------------EEeEEEeccccCCCCCCCCeEEeeehHHHHHHHHHHHHHHcCCCCCCceeeeee
Q ss_pred CCCCCCC--CCccccccCCCCCCCCCCccccCccC
Q 000060 2058 PPLPSPP--SSNQMISHFPGGLPSHFPLYEMNPLL 2090 (2472)
Q Consensus 2058 ~~lpspq--~s~~m~s~~p~~~~~~f~~~emn~ml 2090 (2472)
|.|+... |=-++|+|--| +|.|+....+
T Consensus 89 p~~~~~~~iTi~~LL~htSG-----l~~~~~~~~~ 118 (362)
T d2drwa1 89 PDLPKAAQMPVRILLNHRSG-----LPDFETSMPM 118 (362)
T ss_dssp TTSTTGGGCBGGGGTTTCSC-----CCCCTTTSBS
T ss_pred ccccccccccccccccccCC-----CCcccccccc
Done!