Query 000062
Match_columns 2470
No_of_seqs 295 out of 1413
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 16:04:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00121 MAEBL; Provisional 98.7 1.2E-07 2.5E-12 123.9 15.9 10 82-91 603-612 (2084)
2 PTZ00121 MAEBL; Provisional 98.7 2.9E-07 6.4E-12 120.3 17.8 10 258-267 778-787 (2084)
3 KOG1029 Endocytic adaptor prot 98.6 1.3E-06 2.8E-11 109.9 17.8 29 562-590 313-344 (1118)
4 PF07001 BAT2_N: BAT2 N-termin 98.6 1.9E-07 4.2E-12 104.3 9.5 73 8-119 16-88 (189)
5 PTZ00266 NIMA-related protein 98.4 3.6E-06 7.8E-11 111.8 15.6 15 52-66 25-39 (1021)
6 KOG1029 Endocytic adaptor prot 98.4 7.9E-06 1.7E-10 103.1 17.1 11 81-91 93-103 (1118)
7 PTZ00266 NIMA-related protein 98.2 9.7E-06 2.1E-10 107.9 14.7 11 850-861 691-701 (1021)
8 KOG4364 Chromatin assembly fac 98.1 4.7E-05 1E-09 95.7 17.0 20 1272-1291 750-769 (811)
9 PRK09510 tolA cell envelope in 98.1 9.2E-05 2E-09 90.6 18.9 9 582-590 98-106 (387)
10 KOG4364 Chromatin assembly fac 98.0 8.2E-05 1.8E-09 93.7 16.1 8 1299-1306 745-752 (811)
11 COG3064 TolA Membrane protein 98.0 0.00013 2.9E-09 86.2 15.6 19 550-568 66-84 (387)
12 KOG0163 Myosin class VI heavy 97.9 0.00037 8.1E-09 88.5 17.9 48 845-895 1209-1256(1259)
13 KOG4661 Hsp27-ERE-TATA-binding 97.7 0.0022 4.7E-08 80.0 20.1 65 786-850 781-856 (940)
14 TIGR02794 tolA_full TolA prote 97.7 0.002 4.3E-08 78.4 19.5 11 840-850 287-297 (346)
15 KOG2072 Translation initiation 97.6 0.011 2.4E-07 76.9 26.0 13 762-774 897-909 (988)
16 COG3064 TolA Membrane protein 97.6 0.0016 3.6E-08 77.3 17.3 9 913-921 362-370 (387)
17 KOG0163 Myosin class VI heavy 97.6 0.00072 1.6E-08 86.0 15.0 13 71-83 262-274 (1259)
18 KOG2891 Surface glycoprotein [ 97.6 0.0018 3.9E-08 75.8 17.2 9 474-482 228-236 (445)
19 KOG2891 Surface glycoprotein [ 97.6 0.0036 7.8E-08 73.4 18.6 22 552-573 276-297 (445)
20 PF05262 Borrelia_P83: Borreli 97.5 0.0015 3.2E-08 82.4 16.2 8 369-376 11-18 (489)
21 KOG1144 Translation initiation 97.4 0.0005 1.1E-08 88.0 10.4 6 1132-1137 730-735 (1064)
22 PF05262 Borrelia_P83: Borreli 97.2 0.0052 1.1E-07 77.6 15.4 9 547-555 182-190 (489)
23 KOG1144 Translation initiation 97.2 0.00091 2E-08 85.8 8.5 11 648-658 234-244 (1064)
24 KOG2412 Nuclear-export-signal 97.1 0.012 2.7E-07 74.1 17.0 23 829-851 424-446 (591)
25 KOG2072 Translation initiation 96.9 0.1 2.3E-06 68.5 23.3 7 724-730 888-894 (988)
26 KOG4661 Hsp27-ERE-TATA-binding 96.8 0.0068 1.5E-07 75.8 11.7 20 236-256 256-275 (940)
27 PF12037 DUF3523: Domain of un 96.7 0.1 2.2E-06 62.4 19.8 6 538-543 27-32 (276)
28 TIGR03319 YmdA_YtgF conserved 96.3 0.057 1.2E-06 69.1 15.5 6 780-785 249-254 (514)
29 KOG0742 AAA+-type ATPase [Post 96.3 0.16 3.4E-06 63.4 17.8 7 537-543 70-76 (630)
30 KOG0742 AAA+-type ATPase [Post 96.1 0.16 3.5E-06 63.3 17.2 16 540-555 90-105 (630)
31 PRK00106 hypothetical protein; 96.0 0.1 2.2E-06 67.2 15.5 6 780-785 270-275 (535)
32 KOG2002 TPR-containing nuclear 95.7 0.038 8.2E-07 73.6 9.8 6 549-554 757-762 (1018)
33 KOG3054 Uncharacterized conser 95.0 0.17 3.8E-06 59.4 11.3 8 762-769 250-257 (299)
34 PF12037 DUF3523: Domain of un 95.0 2 4.3E-05 52.0 20.0 18 501-518 19-36 (276)
35 PF09726 Macoilin: Transmembra 94.5 0.73 1.6E-05 61.4 16.4 9 188-196 196-204 (697)
36 KOG3654 Uncharacterized CH dom 93.8 0.29 6.4E-06 61.7 10.3 20 201-220 115-134 (708)
37 KOG1103 Predicted coiled-coil 92.2 0.64 1.4E-05 56.7 9.7 87 913-1011 399-491 (561)
38 PRK12705 hypothetical protein; 92.0 2 4.3E-05 55.7 14.3 11 548-558 22-32 (508)
39 KOG4817 Unnamed protein [Funct 91.4 2.9 6.4E-05 51.9 14.0 75 8-120 15-89 (468)
40 KOG0579 Ste20-like serine/thre 91.3 1.8 4E-05 56.6 12.6 10 346-355 574-583 (1187)
41 COG4942 Membrane-bound metallo 90.4 10 0.00022 48.5 17.6 8 787-794 358-365 (420)
42 KOG1103 Predicted coiled-coil 90.4 6.7 0.00015 48.5 15.5 16 998-1013 413-428 (561)
43 TIGR01069 mutS2 MutS2 family p 90.0 6.7 0.00015 53.2 16.9 14 277-290 217-230 (771)
44 PRK00409 recombination and DNA 90.0 7.3 0.00016 53.0 17.2 7 281-287 226-232 (782)
45 KOG2507 Ubiquitin regulatory p 89.1 0.91 2E-05 57.0 7.3 11 859-869 423-433 (506)
46 PLN02316 synthase/transferase 88.6 8.7 0.00019 53.7 16.6 9 267-275 120-128 (1036)
47 PF02029 Caldesmon: Caldesmon; 88.6 1.3 2.7E-05 57.2 8.4 9 876-884 460-468 (492)
48 KOG2689 Predicted ubiquitin re 88.5 3.4 7.5E-05 50.0 11.2 15 798-812 249-263 (290)
49 KOG3654 Uncharacterized CH dom 87.4 3.6 7.7E-05 52.7 10.9 17 75-91 17-33 (708)
50 PTZ00491 major vault protein; 87.1 11 0.00023 51.5 15.6 18 497-514 583-600 (850)
51 KOG0994 Extracellular matrix g 87.1 12 0.00027 51.9 15.9 64 162-232 1193-1261(1758)
52 PTZ00491 major vault protein; 86.0 21 0.00046 48.9 17.3 11 150-160 198-208 (850)
53 PF06637 PV-1: PV-1 protein (P 85.3 16 0.00035 46.1 14.7 13 751-763 408-420 (442)
54 KOG0579 Ste20-like serine/thre 85.1 13 0.00029 49.3 14.4 14 182-195 472-485 (1187)
55 KOG2507 Ubiquitin regulatory p 84.7 1.7 3.8E-05 54.7 6.5 8 805-812 360-367 (506)
56 PF09731 Mitofilin: Mitochondr 84.7 52 0.0011 43.2 19.8 16 318-333 26-41 (582)
57 KOG1265 Phospholipase C [Lipid 83.8 44 0.00094 46.1 18.3 41 318-365 752-794 (1189)
58 COG2268 Uncharacterized protei 83.6 31 0.00068 45.6 16.9 7 340-346 95-101 (548)
59 KOG0161 Myosin class II heavy 82.9 36 0.00077 50.6 18.5 9 185-193 302-310 (1930)
60 PF05914 RIB43A: RIB43A; Inte 82.9 1.1E+02 0.0023 39.3 20.6 7 537-543 142-148 (379)
61 KOG0980 Actin-binding protein 82.8 1.5E+02 0.0033 41.4 22.6 11 524-534 310-320 (980)
62 KOG1265 Phospholipase C [Lipid 82.4 42 0.0009 46.3 17.4 19 341-359 740-758 (1189)
63 COG4372 Uncharacterized protei 81.7 1.1E+02 0.0023 39.4 19.5 13 548-560 80-92 (499)
64 KOG0161 Myosin class II heavy 81.6 46 0.00099 49.6 18.8 11 253-263 454-464 (1930)
65 KOG3634 Troponin [Cytoskeleton 81.2 23 0.0005 44.2 13.6 20 744-763 290-309 (361)
66 PRK13428 F0F1 ATP synthase sub 81.0 68 0.0015 41.5 18.4 22 827-848 244-265 (445)
67 TIGR02680 conserved hypothetic 80.5 42 0.0009 48.6 17.9 6 361-366 57-62 (1353)
68 PRK04863 mukB cell division pr 80.0 56 0.0012 47.9 18.8 12 1288-1299 830-841 (1486)
69 PF06098 Radial_spoke_3: Radia 79.2 17 0.00037 44.8 11.8 12 336-347 3-14 (291)
70 COG2433 Uncharacterized conser 79.0 47 0.001 44.4 16.0 13 735-747 545-557 (652)
71 KOG0982 Centrosomal protein Nu 78.9 1.2E+02 0.0026 39.4 18.8 21 539-559 215-235 (502)
72 KOG2668 Flotillins [Intracellu 78.8 68 0.0015 40.7 16.5 7 470-476 140-146 (428)
73 KOG0933 Structural maintenance 78.8 88 0.0019 44.0 18.7 32 529-560 652-685 (1174)
74 KOG3634 Troponin [Cytoskeleton 77.3 16 0.00035 45.4 10.8 7 780-786 304-310 (361)
75 KOG0288 WD40 repeat protein Ti 77.2 99 0.0022 40.0 17.5 15 997-1011 383-397 (459)
76 PRK04863 mukB cell division pr 76.1 73 0.0016 46.8 18.2 12 842-853 734-745 (1486)
77 PF09756 DDRGK: DDRGK domain; 75.5 0.9 1.9E-05 52.3 0.0 6 762-767 149-154 (188)
78 KOG0976 Rho/Rac1-interacting s 74.4 1.3E+02 0.0027 41.6 18.0 24 1061-1084 812-837 (1265)
79 PRK12472 hypothetical protein; 74.1 38 0.00082 44.3 13.2 24 469-503 122-145 (508)
80 PF04094 DUF390: Protein of un 73.5 1E+02 0.0022 42.1 17.0 18 740-757 686-703 (828)
81 KOG3756 Pinin (desmosome-assoc 73.5 1.6E+02 0.0034 37.2 17.5 13 376-388 53-65 (340)
82 KOG0612 Rho-associated, coiled 73.4 55 0.0012 46.5 15.2 15 469-484 389-403 (1317)
83 KOG4572 Predicted DNA-binding 73.3 57 0.0012 44.5 14.6 15 69-84 229-243 (1424)
84 PF10168 Nup88: Nuclear pore c 72.9 33 0.00072 46.7 13.1 11 81-91 83-93 (717)
85 TIGR02169 SMC_prok_A chromosom 72.8 1.5E+02 0.0033 41.3 19.5 6 780-785 574-579 (1164)
86 KOG0971 Microtubule-associated 71.8 1.2E+02 0.0025 42.4 17.0 21 713-733 468-488 (1243)
87 KOG4722 Zn-finger protein [Gen 70.6 2.5E+02 0.0055 36.5 18.5 17 189-205 82-98 (672)
88 PF05914 RIB43A: RIB43A; Inte 70.5 2.4E+02 0.0052 36.3 18.9 13 512-524 131-143 (379)
89 KOG0996 Structural maintenance 70.3 79 0.0017 45.0 15.5 8 1467-1474 1187-1194(1293)
90 PF05667 DUF812: Protein of un 70.2 1.5E+02 0.0033 40.0 17.8 9 187-195 47-55 (594)
91 PF04094 DUF390: Protein of un 70.1 82 0.0018 42.9 15.1 13 548-560 430-442 (828)
92 KOG2441 mRNA splicing factor/p 69.9 37 0.0008 43.3 11.5 47 732-785 397-444 (506)
93 PLN03188 kinesin-12 family pro 69.5 1.6E+02 0.0034 42.7 18.1 16 407-422 671-686 (1320)
94 PF07227 DUF1423: Protein of u 68.4 74 0.0016 41.4 13.9 7 478-484 261-267 (446)
95 COG2433 Uncharacterized conser 65.6 1.4E+02 0.0029 40.4 15.6 6 458-463 271-276 (652)
96 KOG0971 Microtubule-associated 65.5 95 0.0021 43.2 14.4 14 1328-1341 1108-1121(1243)
97 KOG2893 Zn finger protein [Gen 64.2 1.6E+02 0.0035 35.9 14.5 82 2221-2323 187-271 (341)
98 KOG2129 Uncharacterized conser 64.0 3.2E+02 0.007 35.7 17.8 17 832-848 450-468 (552)
99 KOG0976 Rho/Rac1-interacting s 63.8 3.2E+02 0.0068 38.2 18.3 13 1534-1546 1197-1209(1265)
100 KOG0996 Structural maintenance 63.6 2.4E+02 0.0053 40.6 18.0 7 1228-1234 1168-1174(1293)
101 KOG0288 WD40 repeat protein Ti 62.8 2.7E+02 0.0058 36.4 16.9 8 1004-1011 354-361 (459)
102 KOG2441 mRNA splicing factor/p 62.5 34 0.00073 43.6 9.3 18 732-749 412-429 (506)
103 PF12297 EVC2_like: Ellis van 61.5 2.1E+02 0.0045 37.4 15.8 15 408-422 97-111 (429)
104 COG1196 Smc Chromosome segrega 61.3 2.7E+02 0.0059 40.1 18.8 10 916-925 645-654 (1163)
105 PRK03918 chromosome segregatio 61.2 3.7E+02 0.0079 37.1 19.4 7 349-355 32-38 (880)
106 PF15558 DUF4659: Domain of un 60.7 4.9E+02 0.011 33.9 18.8 6 703-708 325-330 (376)
107 KOG4403 Cell surface glycoprot 60.7 1.7E+02 0.0036 38.2 14.6 11 531-541 202-212 (575)
108 COG4499 Predicted membrane pro 59.7 23 0.00051 44.9 7.4 24 545-568 344-367 (434)
109 PF00901 Orbi_VP5: Orbivirus o 58.5 3.9E+02 0.0084 35.7 17.6 13 538-550 77-89 (508)
110 KOG4673 Transcription factor T 57.9 4.2E+02 0.0091 36.6 17.8 14 1078-1091 893-906 (961)
111 COG1196 Smc Chromosome segrega 57.7 3.9E+02 0.0084 38.7 19.3 6 780-785 568-573 (1163)
112 KOG0577 Serine/threonine prote 57.5 3E+02 0.0065 37.7 16.5 15 261-275 210-224 (948)
113 KOG4572 Predicted DNA-binding 55.0 3E+02 0.0065 38.3 16.0 7 291-297 511-517 (1424)
114 PF07227 DUF1423: Protein of u 53.7 1.5E+02 0.0033 38.8 13.0 6 344-349 160-165 (446)
115 KOG0345 ATP-dependent RNA heli 52.8 54 0.0012 42.9 9.0 11 376-386 352-362 (567)
116 KOG0249 LAR-interacting protei 51.7 2E+02 0.0044 39.5 13.9 12 912-923 440-451 (916)
117 COG5269 ZUO1 Ribosome-associat 51.4 90 0.0019 38.5 10.0 9 272-280 17-25 (379)
118 PF15066 CAGE1: Cancer-associa 51.2 7.5E+02 0.016 33.1 18.7 36 185-220 20-57 (527)
119 KOG3915 Transcription regulato 50.8 1.7E+02 0.0037 38.3 12.6 20 36-55 71-90 (641)
120 KOG0612 Rho-associated, coiled 50.6 4.2E+02 0.0091 38.6 17.0 15 56-70 91-105 (1317)
121 KOG0250 DNA repair protein RAD 48.6 5.9E+02 0.013 36.9 17.9 16 404-419 85-100 (1074)
122 KOG1425 Microfibrillar-associa 47.8 96 0.0021 39.5 9.8 13 304-316 51-63 (430)
123 KOG0249 LAR-interacting protei 47.2 5.8E+02 0.012 35.6 16.8 13 1493-1505 823-835 (916)
124 KOG0345 ATP-dependent RNA heli 46.6 80 0.0017 41.5 9.1 8 309-316 170-177 (567)
125 COG0419 SbcC ATPase involved i 44.8 9.9E+02 0.022 33.8 19.6 7 349-355 34-40 (908)
126 KOG2505 Ankyrin repeat protein 44.2 89 0.0019 41.2 9.0 7 347-353 254-260 (591)
127 PLN03188 kinesin-12 family pro 43.1 9.9E+02 0.021 35.5 18.9 12 70-81 65-76 (1320)
128 KOG0247 Kinesin-like protein [ 42.2 3.4E+02 0.0074 37.7 13.9 8 352-359 326-333 (809)
129 PF15359 CDV3: Carnitine defic 41.6 63 0.0014 36.0 6.4 62 117-193 60-123 (129)
130 KOG3598 Thyroid hormone recept 41.5 64 0.0014 46.5 7.6 12 376-387 1924-1935(2220)
131 PF12004 DUF3498: Domain of un 41.3 8.8 0.00019 49.9 0.0 8 379-386 236-243 (495)
132 PF07111 HCR: Alpha helical co 41.0 1.2E+03 0.027 32.7 18.9 9 767-775 308-316 (739)
133 KOG0979 Structural maintenance 40.1 7.1E+02 0.015 35.9 16.6 13 500-512 146-158 (1072)
134 KOG0804 Cytoplasmic Zn-finger 39.3 1.1E+03 0.024 31.6 17.2 10 376-385 235-244 (493)
135 COG5281 Phage-related minor ta 39.0 6E+02 0.013 36.0 15.7 12 177-188 41-52 (833)
136 KOG3878 Protein involved in ma 38.7 4.4E+02 0.0094 33.7 13.1 24 530-553 76-103 (469)
137 PF03154 Atrophin-1: Atrophin- 36.1 20 0.00043 49.5 2.0 28 1109-1137 853-880 (982)
138 KOG2751 Beclin-like protein [S 33.5 6.9E+02 0.015 33.1 14.1 18 832-849 380-397 (447)
139 KOG2341 TATA box binding prote 33.3 1.6E+02 0.0034 39.6 9.0 7 85-91 10-16 (563)
140 KOG3598 Thyroid hormone recept 33.2 60 0.0013 46.8 5.5 11 475-485 2007-2017(2220)
141 KOG0979 Structural maintenance 33.1 1.3E+03 0.027 33.7 17.2 11 899-909 580-590 (1072)
142 PF03154 Atrophin-1: Atrophin- 33.1 24 0.00052 48.9 2.0 6 152-157 152-157 (982)
143 KOG0933 Structural maintenance 33.0 1.5E+03 0.032 33.2 17.7 6 780-785 1043-1048(1174)
144 KOG0963 Transcription factor/C 33.0 1.5E+03 0.033 31.4 17.8 19 524-543 85-103 (629)
145 PF15556 Zwint: ZW10 interacto 32.6 1E+03 0.022 29.1 18.9 7 537-543 45-51 (252)
146 KOG0577 Serine/threonine prote 32.6 1.6E+03 0.034 31.5 17.4 12 479-490 401-412 (948)
147 KOG2505 Ankyrin repeat protein 32.2 1.3E+02 0.0029 39.7 8.0 13 531-543 323-335 (591)
148 KOG3878 Protein involved in ma 31.9 1.2E+02 0.0026 38.3 7.2 14 908-921 402-415 (469)
149 PF04615 Utp14: Utp14 protein; 31.9 8.2E+02 0.018 33.9 15.6 48 1099-1146 584-633 (735)
150 KOG3973 Uncharacterized conser 31.4 78 0.0017 40.1 5.6 57 71-127 310-393 (465)
151 KOG2751 Beclin-like protein [S 30.0 1.1E+03 0.024 31.5 15.0 9 734-742 280-288 (447)
152 PRK10361 DNA recombination pro 29.5 1.6E+03 0.034 30.4 18.4 14 714-727 200-215 (475)
153 PRK10929 putative mechanosensi 29.3 1.7E+03 0.037 33.0 18.1 18 1656-1673 1061-1078(1109)
154 PF06409 NPIP: Nuclear pore co 28.9 5.3E+02 0.012 31.8 11.4 7 745-751 221-227 (265)
155 KOG2823 Cellular protein (glio 28.4 2.4E+02 0.0051 37.0 9.1 11 331-341 47-57 (438)
156 PF04615 Utp14: Utp14 protein; 28.3 4.5E+02 0.0097 36.3 12.3 7 1132-1138 596-602 (735)
157 PF07111 HCR: Alpha helical co 28.2 1.9E+03 0.041 31.0 18.6 10 546-555 475-484 (739)
158 KOG2341 TATA box binding prote 27.8 2.5E+02 0.0054 37.9 9.4 25 486-510 321-345 (563)
159 KOG3973 Uncharacterized conser 27.4 43 0.00092 42.2 2.6 20 36-55 441-460 (465)
160 KOG1832 HIV-1 Vpr-binding prot 27.0 41 0.00089 46.3 2.5 26 1101-1126 1426-1451(1516)
161 PF09744 Jnk-SapK_ap_N: JNK_SA 26.9 6.8E+02 0.015 29.1 11.5 23 529-551 16-38 (158)
162 PF05279 Asp-B-Hydro_N: Aspart 26.1 82 0.0018 38.4 4.5 7 537-543 56-62 (243)
163 PRK11281 hypothetical protein; 26.0 2.2E+03 0.048 31.9 18.4 20 1656-1675 1064-1083(1113)
164 KOG0243 Kinesin-like protein [ 25.9 2.1E+03 0.045 31.9 17.7 47 327-376 159-206 (1041)
165 TIGR00606 rad50 rad50. This fa 25.8 2.4E+03 0.053 31.5 19.3 151 548-698 209-368 (1311)
166 KOG1924 RhoA GTPase effector D 25.4 1.9E+02 0.0041 40.1 7.8 38 2135-2173 574-613 (1102)
167 PRK10246 exonuclease subunit S 25.2 2.2E+03 0.048 31.3 18.3 7 349-355 39-45 (1047)
168 KOG2370 Cactin [Signal transdu 23.8 4.6E+02 0.0099 35.0 10.3 11 984-994 445-455 (623)
169 PF07767 Nop53: Nop53 (60S rib 23.7 3.9E+02 0.0085 34.0 9.9 9 518-526 185-193 (387)
170 TIGR03185 DNA_S_dndD DNA sulfu 23.7 2E+03 0.044 29.8 17.6 20 349-368 37-56 (650)
171 KOG0018 Structural maintenance 23.6 1.9E+03 0.042 32.2 16.6 16 1062-1077 639-654 (1141)
172 KOG2117 Uncharacterized conser 23.3 6.5E+02 0.014 32.8 11.3 95 577-671 49-168 (379)
173 PRK10929 putative mechanosensi 22.4 2.8E+03 0.06 31.0 18.3 6 1110-1115 770-775 (1109)
174 KOG4715 SWI/SNF-related matrix 22.1 3.1E+02 0.0067 34.8 8.2 13 279-291 25-37 (410)
175 KOG4715 SWI/SNF-related matrix 21.6 1.1E+03 0.024 30.3 12.6 6 482-487 131-136 (410)
176 PRK10361 DNA recombination pro 21.5 2.1E+03 0.046 29.2 19.7 6 832-837 260-265 (475)
177 PRK05035 electron transport co 21.5 2.7E+02 0.0058 38.5 8.4 32 151-182 73-106 (695)
178 KOG4031 Vesicle coat protein c 21.3 5.4E+02 0.012 31.2 9.6 65 623-687 104-169 (216)
179 KOG1899 LAR transmembrane tyro 20.9 2.4E+03 0.053 29.7 17.4 19 993-1011 467-485 (861)
180 PF07415 Herpes_LMP2: Gammaher 20.9 33 0.00072 43.1 0.1 41 93-133 14-54 (489)
181 KOG2963 RNA-binding protein re 20.8 2.7E+02 0.0058 35.8 7.4 12 407-418 199-210 (405)
182 PHA02562 46 endonuclease subun 20.6 2E+03 0.044 28.6 17.7 8 348-355 35-42 (562)
183 KOG4643 Uncharacterized coiled 20.4 2.9E+03 0.064 30.5 18.0 143 545-687 400-547 (1195)
184 KOG0923 mRNA splicing factor A 20.3 2.4E+02 0.0052 38.8 7.2 135 614-748 38-181 (902)
185 KOG2962 Prohibitin-related mem 20.1 1.7E+03 0.037 27.7 13.3 7 478-484 35-41 (322)
186 PRK13203 ureB urease subunit b 20.1 39 0.00084 36.5 0.3 14 2076-2089 37-50 (102)
187 KOG0245 Kinesin-like protein [ 20.1 1E+03 0.023 34.7 13.0 17 45-61 93-109 (1221)
No 1
>PTZ00121 MAEBL; Provisional
Probab=98.73 E-value=1.2e-07 Score=123.90 Aligned_cols=10 Identities=50% Similarity=0.610 Sum_probs=6.4
Q ss_pred cccccccccC
Q 000062 82 SLRKEHERFD 91 (2470)
Q Consensus 82 slrkehe~~d 91 (2470)
---+.-+|||
T Consensus 603 pq~~~m~rfd 612 (2084)
T PTZ00121 603 PQQKFMERFD 612 (2084)
T ss_pred cHHHHHHhcC
Confidence 3456677777
No 2
>PTZ00121 MAEBL; Provisional
Probab=98.70 E-value=2.9e-07 Score=120.33 Aligned_cols=10 Identities=10% Similarity=-0.283 Sum_probs=4.6
Q ss_pred CCCCCCCcch
Q 000062 258 INHDTGSARR 267 (2470)
Q Consensus 258 ~~~~~g~~~~ 267 (2470)
+-+|+||+..
T Consensus 778 G~~GlGGRLG 787 (2084)
T PTZ00121 778 GLYGFGGRLG 787 (2084)
T ss_pred eeeccCcccc
Confidence 3445554443
No 3
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=1.3e-06 Score=109.90 Aligned_cols=29 Identities=41% Similarity=0.612 Sum_probs=16.1
Q ss_pred ccCCchhhHHH---HHHHHHHHHHHHHHHHHH
Q 000062 562 DFHDPVRESFE---AELERVQKMQEQERQRII 590 (2470)
Q Consensus 562 E~EEKqREEeE---aELERrqEeEEEERqReE 590 (2470)
.||++.++..+ +|++++++..+++.+|+.
T Consensus 313 TFEDKrkeNy~kGqaELerRRq~leeqqqrer 344 (1118)
T KOG1029|consen 313 TFEDKRKENYEKGQAELERRRQALEEQQQRER 344 (1118)
T ss_pred chhhhhHHhHhhhhHHHHHHHHHHHHHHHHHH
Confidence 45566665544 677766655555544443
No 4
>PF07001 BAT2_N: BAT2 N-terminus; InterPro: IPR009738 This entry represents the N terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin [].
Probab=98.56 E-value=1.9e-07 Score=104.27 Aligned_cols=73 Identities=33% Similarity=0.535 Sum_probs=50.5
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeeccCccccccCCccccCCCCCCCcccccc
Q 000062 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (2470)
Q Consensus 8 ~k~~svnln~~yg~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~gggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh 87 (2470)
.||.++|||..|--.+.-- + -....-..||.+|++= +.. --||||.||||||.||
T Consensus 16 ~Ky~~l~in~~YkGks~e~---------q---------k~~~~~~hGmqsLGKv------~~a-RRmPpPaNLPSLKaEn 70 (189)
T PF07001_consen 16 PKYSSLNINSLYKGKSLEP---------Q---------KSTVPRRHGMQSLGKV------PSA-RRMPPPANLPSLKAEN 70 (189)
T ss_pred ccceeechhhhhcCCcccc---------c---------cCCccCCCcceecccc------ccc-ccCCCCCCCcchhhhc
Confidence 3899999999993333210 1 1122236799999982 111 1289999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000062 88 ERFDSSGSNGGPAGGGVSGAGQRPGSSGTGWT 119 (2470)
Q Consensus 88 e~~ds~g~~~g~~~~~~~g~g~rp~ssg~gwt 119 (2470)
.++| |+...|+.. |.||+
T Consensus 71 ~GnD-------pnv~lVP~~-------GsGWa 88 (189)
T PF07001_consen 71 KGND-------PNVSLVPKG-------GSGWA 88 (189)
T ss_pred cCCC-------CCceeecCC-------CcCcc
Confidence 9999 776655543 46998
No 5
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.37 E-value=3.6e-06 Score=111.77 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=8.9
Q ss_pred CCceEEeeccCcccc
Q 000062 52 GGGMLVLSRPRSSQK 66 (2470)
Q Consensus 52 gggm~vlsr~r~~~~ 66 (2470)
+=|.|.|.+.+....
T Consensus 25 gFGtVYLAkdk~tg~ 39 (1021)
T PTZ00266 25 RFGEVFLVKHKRTQE 39 (1021)
T ss_pred CCeEEEEEEECCCCe
Confidence 345677777665543
No 6
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=7.9e-06 Score=103.15 Aligned_cols=11 Identities=45% Similarity=0.492 Sum_probs=6.7
Q ss_pred CcccccccccC
Q 000062 81 PSLRKEHERFD 91 (2470)
Q Consensus 81 pslrkehe~~d 91 (2470)
|||-|---+|-
T Consensus 93 Psll~~~~~~~ 103 (1118)
T KOG1029|consen 93 PSLLKQPPRNA 103 (1118)
T ss_pred hHHhccCCcCC
Confidence 55766665554
No 7
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.22 E-value=9.7e-06 Score=107.86 Aligned_cols=11 Identities=36% Similarity=0.755 Sum_probs=6.8
Q ss_pred CCCcCCcccccc
Q 000062 850 GDHYGRNIEMES 861 (2470)
Q Consensus 850 gDt~gr~~e~ds 861 (2470)
+|||+|+ +|+.
T Consensus 691 ~~~~~~~-~~~~ 701 (1021)
T PTZ00266 691 QDTFDRN-DMHG 701 (1021)
T ss_pred ccccchh-hhhH
Confidence 5677776 4544
No 8
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.13 E-value=4.7e-05 Score=95.74 Aligned_cols=20 Identities=30% Similarity=0.200 Sum_probs=10.6
Q ss_pred CCCcceEEEeecccCCCCCC
Q 000062 1272 QAETPVKLQFGLFSGPSLIP 1291 (2470)
Q Consensus 1272 ~~E~pv~lqFGlfsGpsLip 1291 (2470)
++.++|+-|+-.--|++--|
T Consensus 750 ~~~lqv~~qw~y~l~~~~sp 769 (811)
T KOG4364|consen 750 DSRLQVKKQWLYKLGLSPSP 769 (811)
T ss_pred cccccccceeeeeecCCCCC
Confidence 34566666665555544333
No 9
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=98.12 E-value=9.2e-05 Score=90.57 Aligned_cols=9 Identities=44% Similarity=0.608 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 000062 582 QEQERQRII 590 (2470)
Q Consensus 582 EEEERqReE 590 (2470)
.|+++.+..
T Consensus 98 ~eq~rlk~l 106 (387)
T PRK09510 98 AEQERLKQL 106 (387)
T ss_pred HHHHHHHHH
Confidence 333333333
No 10
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.02 E-value=8.2e-05 Score=93.69 Aligned_cols=8 Identities=13% Similarity=0.111 Sum_probs=3.9
Q ss_pred eccccCcc
Q 000062 1299 IGSIQMPL 1306 (2470)
Q Consensus 1299 IGSIQmPl 1306 (2470)
|-+.|.|=
T Consensus 745 l~~Fq~~~ 752 (811)
T KOG4364|consen 745 LSDFQDSR 752 (811)
T ss_pred HHhccccc
Confidence 44555553
No 11
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=0.00013 Score=86.16 Aligned_cols=19 Identities=5% Similarity=0.160 Sum_probs=8.0
Q ss_pred HHhhhhhhhcccccCCchh
Q 000062 550 VVKKKKDVLKQTDFHDPVR 568 (2470)
Q Consensus 550 lVKKKKEaeKqaE~EEKqR 568 (2470)
.++...+..++.+.++..+
T Consensus 66 r~q~Q~~~akk~e~~r~kk 84 (387)
T COG3064 66 RIQSQQSSAKKGEQQRKKK 84 (387)
T ss_pred HHHHHHHHHhhhHHHHHhh
Confidence 3444444444444433333
No 12
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=97.87 E-value=0.00037 Score=88.49 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=36.9
Q ss_pred ccCCCCCCcCCccccccccccccccccCCcccccCCCCCCCCCCCCCCCCC
Q 000062 845 NMSGDGDHYGRNIEMESDFHENITERYGDVGWGQGRYRGNVHPPYPDRIYP 895 (2470)
Q Consensus 845 ni~GDgDt~gr~~e~dsdf~en~~Er~GD~gW~qS~srgrp~PP~~~RmYq 895 (2470)
.....|.+-+|.+||.++-||.+|||||...+.+ -+-..|.++..|.|
T Consensus 1209 ~LeeTgL~rKrGAEI~~~eFe~~W~r~Ggk~~~~---~~~a~p~~~~a~~q 1256 (1259)
T KOG0163|consen 1209 SLEETGLTRKRGAEILEHEFEREWERNGGKAYKN---LGAAKPNGPAAAMQ 1256 (1259)
T ss_pred hhHhhccccccccccChHHHHHHHHHhCcHHhHh---hcccCCCchHHHHh
Confidence 4556677889999999999999999999988887 23355556555544
No 13
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.69 E-value=0.0022 Score=80.00 Aligned_cols=65 Identities=25% Similarity=0.404 Sum_probs=35.4
Q ss_pred ccccCCCCCCCCCCCCCCCCCCC-cCCCCCCC--cccccCCCCCcccCcc----h-hhcccccc---cccccCCCC
Q 000062 786 QDAENGHYSPRRDSAFGGRAVPR-KEFYGGPG--IMSSRNYYKAGILEPH----M-DEFTVSRG---QRWNMSGDG 850 (2470)
Q Consensus 786 qd~eN~~~sPrrDs~fg~rsppr-k~~~gG~G--fvsK~sY~ggG~tD~~----L-edYr~~~p---~rWni~GDg 850 (2470)
.|+.-+.|-|..-.--|+-++++ .++.+||| |+.|+...+.|+.-+. | +-|+.... .+|.=.-|+
T Consensus 781 gd~regqHyp~~~~~hGGp~erHgrdsrdGwgGygsdKr~seGrGlppppr~Rdwg~h~rR~d~hs~r~wqgs~dg 856 (940)
T KOG4661|consen 781 GDYREGQHYPLSGTVHGGPSERHGRDSRDGWGGYGSDKRNSEGRGLPPPPRDRDWGSHYRRDDSHSLRRWQGSSDG 856 (940)
T ss_pred ccchhhcccCccCccCCCchhhccCccCCCcccccccccccCCCCCCCCCccccccccccccchhhhhhhccCCCC
Confidence 66677765553211123333444 56667776 8899988776665542 2 34444443 456444333
No 14
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=97.67 E-value=0.002 Score=78.44 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=4.7
Q ss_pred cccccccCCCC
Q 000062 840 RGQRWNMSGDG 850 (2470)
Q Consensus 840 ~p~rWni~GDg 850 (2470)
|..++.+..||
T Consensus 287 v~V~I~L~pdG 297 (346)
T TIGR02794 287 CRLRIRLAPDG 297 (346)
T ss_pred EEEEEEECCCC
Confidence 44444444444
No 15
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.011 Score=76.92 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=9.4
Q ss_pred CCCCCCCcccccc
Q 000062 762 DRGKPFNSWRRDA 774 (2470)
Q Consensus 762 dR~Kpi~SWrR~~ 774 (2470)
.|+-+.+.|+|..
T Consensus 897 ~~a~~~~~WrR~a 909 (988)
T KOG2072|consen 897 PRAPEEAEWRRGA 909 (988)
T ss_pred CCCCcchHHhhcc
Confidence 4445778899887
No 16
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=97.63 E-value=0.0016 Score=77.35 Aligned_cols=9 Identities=22% Similarity=0.770 Sum_probs=3.5
Q ss_pred CCCCCCCCC
Q 000062 913 RHPRVLPPP 921 (2470)
Q Consensus 913 RqPRVlPPP 921 (2470)
|+-.||+||
T Consensus 362 k~~kiP~pp 370 (387)
T COG3064 362 KTAKIPKPP 370 (387)
T ss_pred HhccCCCCC
Confidence 333344433
No 17
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=97.62 E-value=0.00072 Score=86.04 Aligned_cols=13 Identities=38% Similarity=0.462 Sum_probs=5.9
Q ss_pred ccccCCCCCCCcc
Q 000062 71 KLSVPPPLNLPSL 83 (2470)
Q Consensus 71 klsvp~plnlpsl 83 (2470)
||++-+|-|.--|
T Consensus 262 kL~L~~pd~f~YL 274 (1259)
T KOG0163|consen 262 KLSLGKPDDFRYL 274 (1259)
T ss_pred HhccCCchhhhHH
Confidence 4555555443333
No 18
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.62 E-value=0.0018 Score=75.75 Aligned_cols=9 Identities=33% Similarity=0.678 Sum_probs=4.8
Q ss_pred ccccccCCc
Q 000062 474 QYNRFRGDA 482 (2470)
Q Consensus 474 QygrYrG~A 482 (2470)
||--|+|-+
T Consensus 228 qfmeykgfa 236 (445)
T KOG2891|consen 228 QFMEYKGFA 236 (445)
T ss_pred HHHHHHhHH
Confidence 455566644
No 19
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.57 E-value=0.0036 Score=73.37 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=9.5
Q ss_pred hhhhhhhcccccCCchhhHHHH
Q 000062 552 KKKKDVLKQTDFHDPVRESFEA 573 (2470)
Q Consensus 552 KKKKEaeKqaE~EEKqREEeEa 573 (2470)
-++.|+..+.+-++-..+++|.
T Consensus 276 akraeerrqieterlrqeeeel 297 (445)
T KOG2891|consen 276 AKRAEERRQIETERLRQEEEEL 297 (445)
T ss_pred HHHHHHHhhhhHHHHhhhHhhh
Confidence 3444444444444433333333
No 20
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=97.53 E-value=0.0015 Score=82.35 Aligned_cols=8 Identities=25% Similarity=0.227 Sum_probs=3.4
Q ss_pred ccCCCcCC
Q 000062 369 IRAPSREG 376 (2470)
Q Consensus 369 ~~~~~reg 376 (2470)
|+.-|++|
T Consensus 11 i~F~Ny~g 18 (489)
T PF05262_consen 11 IEFINYSG 18 (489)
T ss_pred eEEEecCC
Confidence 44444444
No 21
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.0005 Score=88.03 Aligned_cols=6 Identities=17% Similarity=0.401 Sum_probs=2.3
Q ss_pred cceecc
Q 000062 1132 SNLVLG 1137 (2470)
Q Consensus 1132 ~~~vlg 1137 (2470)
|-+|||
T Consensus 730 D~Ivvc 735 (1064)
T KOG1144|consen 730 DQIVVC 735 (1064)
T ss_pred CEEEEc
Confidence 443333
No 22
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=97.19 E-value=0.0052 Score=77.65 Aligned_cols=9 Identities=22% Similarity=0.434 Sum_probs=3.4
Q ss_pred hHHHHhhhh
Q 000062 547 LVGVVKKKK 555 (2470)
Q Consensus 547 m~alVKKKK 555 (2470)
++..+++++
T Consensus 182 vv~~l~~~~ 190 (489)
T PF05262_consen 182 VVQELREDK 190 (489)
T ss_pred HHHHHhhcc
Confidence 333344333
No 23
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.00091 Score=85.80 Aligned_cols=11 Identities=45% Similarity=0.341 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 000062 648 IAREEERQRII 658 (2470)
Q Consensus 648 KReEEEErRrE 658 (2470)
+++++|+.|++
T Consensus 234 kreeEE~~r~e 244 (1064)
T KOG1144|consen 234 KREEEERLRRE 244 (1064)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 24
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=97.09 E-value=0.012 Score=74.14 Aligned_cols=23 Identities=0% Similarity=-0.272 Sum_probs=13.0
Q ss_pred cCcchhhcccccccccccCCCCC
Q 000062 829 LEPHMDEFTVSRGQRWNMSGDGD 851 (2470)
Q Consensus 829 tD~~LedYr~~~p~rWni~GDgD 851 (2470)
-|..|+.++.-||=.=.|+=+.+
T Consensus 424 ~dlllA~l~KkCP~~VPf~~~~~ 446 (591)
T KOG2412|consen 424 GDLLLARLHKKCPYVVPFHIVNS 446 (591)
T ss_pred HHHHHHHHHhcCCccccccccCc
Confidence 34467777777775544444333
No 25
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.1 Score=68.52 Aligned_cols=7 Identities=14% Similarity=0.083 Sum_probs=2.6
Q ss_pred cchhhcc
Q 000062 724 RMVERIT 730 (2470)
Q Consensus 724 RmvERIt 730 (2470)
+-.+++.
T Consensus 888 a~~~~~s 894 (988)
T KOG2072|consen 888 AGPDAIS 894 (988)
T ss_pred ccccCCC
Confidence 3333333
No 26
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.85 E-value=0.0068 Score=75.84 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=13.3
Q ss_pred CCcccccCCCcccCCccccCC
Q 000062 236 GMSPRLQSGQDVVGSRLRENG 256 (2470)
Q Consensus 236 ~mrpq~q~~~~~~g~~~~~~~ 256 (2470)
-..|-+.+-+.+.|.+ ++++
T Consensus 256 eeedlfdSahpeegDl-Dlas 275 (940)
T KOG4661|consen 256 EEEDLFDSAHPEEGDL-DLAS 275 (940)
T ss_pred hccccccccCCccccc-cccc
Confidence 3556677778888876 5544
No 27
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=96.73 E-value=0.1 Score=62.44 Aligned_cols=6 Identities=50% Similarity=0.683 Sum_probs=4.1
Q ss_pred CCCCCc
Q 000062 538 DGRDPF 543 (2470)
Q Consensus 538 dG~Dp~ 543 (2470)
-||||.
T Consensus 27 ~~FDP~ 32 (276)
T PF12037_consen 27 SGFDPE 32 (276)
T ss_pred CCCCcH
Confidence 477776
No 28
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.34 E-value=0.057 Score=69.14 Aligned_cols=6 Identities=33% Similarity=0.130 Sum_probs=3.4
Q ss_pred cccccc
Q 000062 780 SSTFIT 785 (2470)
Q Consensus 780 sS~F~P 785 (2470)
.|+|.|
T Consensus 249 ls~fdp 254 (514)
T TIGR03319 249 LSGFDP 254 (514)
T ss_pred ecCCch
Confidence 556654
No 29
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.16 Score=63.42 Aligned_cols=7 Identities=43% Similarity=0.757 Sum_probs=4.9
Q ss_pred CCCCCCc
Q 000062 537 FDGRDPF 543 (2470)
Q Consensus 537 fdG~Dp~ 543 (2470)
.-|+||.
T Consensus 70 ~~gFDpe 76 (630)
T KOG0742|consen 70 WSGFDPE 76 (630)
T ss_pred ccCCChH
Confidence 3478887
No 30
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.16 Score=63.30 Aligned_cols=16 Identities=6% Similarity=0.451 Sum_probs=7.4
Q ss_pred CCCcchhhHHHHhhhh
Q 000062 540 RDPFSAGLVGVVKKKK 555 (2470)
Q Consensus 540 ~Dp~t~~m~alVKKKK 555 (2470)
+.|-...++.++++++
T Consensus 90 ~s~~aK~vfel~r~qE 105 (630)
T KOG0742|consen 90 HSPYAKDVFELARMQE 105 (630)
T ss_pred cCccHHHHHHHHHHHH
Confidence 3344444555554444
No 31
>PRK00106 hypothetical protein; Provisional
Probab=96.02 E-value=0.1 Score=67.17 Aligned_cols=6 Identities=33% Similarity=0.130 Sum_probs=3.4
Q ss_pred cccccc
Q 000062 780 SSTFIT 785 (2470)
Q Consensus 780 sS~F~P 785 (2470)
.|+|.|
T Consensus 270 lS~fdp 275 (535)
T PRK00106 270 LSGFDP 275 (535)
T ss_pred EeCCCh
Confidence 556654
No 32
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.67 E-value=0.038 Score=73.55 Aligned_cols=6 Identities=50% Similarity=0.556 Sum_probs=2.2
Q ss_pred HHHhhh
Q 000062 549 GVVKKK 554 (2470)
Q Consensus 549 alVKKK 554 (2470)
+++-++
T Consensus 757 a~v~kk 762 (1018)
T KOG2002|consen 757 ALVLKK 762 (1018)
T ss_pred HHHHHH
Confidence 333333
No 33
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.17 Score=59.43 Aligned_cols=8 Identities=50% Similarity=0.551 Sum_probs=5.3
Q ss_pred CCCCCCCc
Q 000062 762 DRGKPFNS 769 (2470)
Q Consensus 762 dR~Kpi~S 769 (2470)
||||+|-.
T Consensus 250 DRGKfIYI 257 (299)
T KOG3054|consen 250 DRGKFIYI 257 (299)
T ss_pred CCCceEEe
Confidence 78776644
No 34
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=94.96 E-value=2 Score=52.01 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCCcccc
Q 000062 501 PHNDPMHNFSRDKRPLLK 518 (2470)
Q Consensus 501 L~NdpllNFGReKRl~~K 518 (2470)
..++-...++||+-.+..
T Consensus 19 ~~~~~~~~~~FDP~aLER 36 (276)
T PF12037_consen 19 NDNPRTTASGFDPEALER 36 (276)
T ss_pred CCCCCcccCCCCcHHHHH
Confidence 445555667788766654
No 35
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.48 E-value=0.73 Score=61.40 Aligned_cols=9 Identities=56% Similarity=0.693 Sum_probs=5.0
Q ss_pred cccccccCC
Q 000062 188 SLQAALPAA 196 (2470)
Q Consensus 188 sl~a~lp~~ 196 (2470)
.|+-|||+.
T Consensus 196 ~l~~~lp~~ 204 (697)
T PF09726_consen 196 LLQQALPPE 204 (697)
T ss_pred HHHHhCCCc
Confidence 455566554
No 36
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=93.82 E-value=0.29 Score=61.68 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=13.2
Q ss_pred hhhcccchhHhhhccccccc
Q 000062 201 KKQKDGFSQKQKQGMSQELG 220 (2470)
Q Consensus 201 ~k~k~~~~qk~kq~~~~~~~ 220 (2470)
||.-+.|.-||+|.|+.--+
T Consensus 115 kkkmea~fakqrqklgksaf 134 (708)
T KOG3654|consen 115 KKKMEAIFAKQRQKLGKSAF 134 (708)
T ss_pred HHHHHHHHHHHHHHhchhhe
Confidence 34455666788888776655
No 37
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=92.23 E-value=0.64 Score=56.74 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=42.1
Q ss_pred CCCCCCCCCccccccCCCCCCCcCC---CCCCccccccccc---ccccccccccccccccccccccCCCcccccCCCCch
Q 000062 913 RHPRVLPPPTLTSMQKPSYRRENEC---PSPSTFQENEVEY---NRLLRSESISLAGLDRSEQHNLAQPEIIDVQPESTE 986 (2470)
Q Consensus 913 RqPRVlPPP~~~s~~r~s~~~~~~~---p~pstf~~~~~~~---~~~~r~e~~~~~~y~~~~~~~~~~~~~i~~~~~~a~ 986 (2470)
+-||-++||+.+.+-++ ..|++-. |+-|+....-+-- -.-.-.-+..-++|.++||+...|-- +|
T Consensus 399 gcP~~ie~~VpmPsPl~-S~GsslspS~~ASSSlt~~pcSSPV~~k~llGssaSSp~~qssyqvginqrf-------ha- 469 (561)
T KOG1103|consen 399 GCPRAIEPAVPMPSPLM-SIGSSLSPSLPASSSLTPRPCSSPVKKKPLLGSSASSPAVQSSYQVGINQRF-------HA- 469 (561)
T ss_pred CCCCCCCCCCCCCCccc-ccccccCCCCcccccCCCCCCCCccccccccccccCChhhhhhhhhcchhhh-------hh-
Confidence 56888888888887773 3443332 2222222111100 00000113345678888885444322 11
Q ss_pred hhhccccccccCccCCCcccccccC
Q 000062 987 NEEQNLERSTTSRCDSQSSLSVSSA 1011 (2470)
Q Consensus 987 ~E~q~~d~~~t~~~dsQsSLSvssp 1011 (2470)
--|++- ++.-.|-|+|.-.|+|
T Consensus 470 -aRhkf~--aqad~dqqasgl~sp~ 491 (561)
T KOG1103|consen 470 -ARHKFA--AQADMDQQASGLNSPA 491 (561)
T ss_pred -ccchhh--hcccCcccccccCCCc
Confidence 123333 4566677777666554
No 38
>PRK12705 hypothetical protein; Provisional
Probab=92.04 E-value=2 Score=55.74 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=4.8
Q ss_pred HHHHhhhhhhh
Q 000062 548 VGVVKKKKDVL 558 (2470)
Q Consensus 548 ~alVKKKKEae 558 (2470)
+..++++.-..
T Consensus 22 ~~~~~~~~~~~ 32 (508)
T PRK12705 22 VVLLKKRQRLA 32 (508)
T ss_pred HHHHHHHHHHH
Confidence 34445544333
No 39
>KOG4817 consensus Unnamed protein [Function unknown]
Probab=91.41 E-value=2.9 Score=51.91 Aligned_cols=75 Identities=36% Similarity=0.509 Sum_probs=47.1
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeeccCccccccCCccccCCCCCCCcccccc
Q 000062 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (2470)
Q Consensus 8 ~k~~svnln~~yg~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~gggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh 87 (2470)
.||--|-||..|--.- .-.+- ..-..-+-||-.|.+ + ..---.|||-||||||-|-
T Consensus 15 ~K~talsin~~ykg~~-----------~~~aq------R~~vp~RhGmQslGK------a-~v~rrmpPPAnLPSLkaEn 70 (468)
T KOG4817|consen 15 PKFTALSINRMYKGSR-----------EPSAQ------RNQVPRRHGMQSLGK------A-KVPRRMPPPANLPSLKAEN 70 (468)
T ss_pred cCcceeehhhhhcCCc-----------CCccc------ccCCCccchhhhhcc------c-cccccCCCCCCCcchhhcc
Confidence 5888888888884331 10000 112233678877764 1 2223579999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000062 88 ERFDSSGSNGGPAGGGVSGAGQRPGSSGTGWTK 120 (2470)
Q Consensus 88 e~~ds~g~~~g~~~~~~~g~g~rp~ssg~gwtk 120 (2470)
-+.| |..-.|+--| +||.+
T Consensus 71 ~g~d-------pn~~lVp~~G-------Tgw~~ 89 (468)
T KOG4817|consen 71 HGSD-------PNNLLVPVEG-------TGWGG 89 (468)
T ss_pred cCCC-------CCceeeecCC-------ccccc
Confidence 9999 7655444333 47764
No 40
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=91.27 E-value=1.8 Score=56.57 Aligned_cols=10 Identities=10% Similarity=0.381 Sum_probs=5.2
Q ss_pred cCCccccccc
Q 000062 346 QRDSETGKVS 355 (2470)
Q Consensus 346 ~r~~e~~k~~ 355 (2470)
+|.|+.|+|-
T Consensus 574 ~~~~~~~~~k 583 (1187)
T KOG0579|consen 574 ERANAVSNIK 583 (1187)
T ss_pred hhhhhhhhhh
Confidence 3555555554
No 41
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.39 E-value=10 Score=48.55 Aligned_cols=8 Identities=38% Similarity=0.331 Sum_probs=3.7
Q ss_pred cccCCCCC
Q 000062 787 DAENGHYS 794 (2470)
Q Consensus 787 d~eN~~~s 794 (2470)
|+.|+.++
T Consensus 358 dhG~gy~s 365 (420)
T COG4942 358 DHGGGYHS 365 (420)
T ss_pred EcCCccEE
Confidence 44454444
No 42
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=90.35 E-value=6.7 Score=48.48 Aligned_cols=16 Identities=31% Similarity=0.106 Sum_probs=8.7
Q ss_pred CccCCCcccccccCCC
Q 000062 998 SRCDSQSSLSVSSAPD 1013 (2470)
Q Consensus 998 ~~~dsQsSLSvsspp~ 1013 (2470)
++..+=||||.|+|-+
T Consensus 413 Pl~S~GsslspS~~AS 428 (561)
T KOG1103|consen 413 PLMSIGSSLSPSLPAS 428 (561)
T ss_pred cccccccccCCCCccc
Confidence 3444556666666543
No 43
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=90.00 E-value=6.7 Score=53.24 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=7.0
Q ss_pred cCCCCCCeeeccCC
Q 000062 277 YFPGPLPLVRLKPR 290 (2470)
Q Consensus 277 ~~~gplplvrl~~~ 290 (2470)
+|.-|..+|-||-+
T Consensus 217 ~~~ep~~~~~ln~~ 230 (771)
T TIGR01069 217 FYIEPQAIVKLNNK 230 (771)
T ss_pred EEEEcHHHHHHHHH
Confidence 44445555555443
No 44
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=89.99 E-value=7.3 Score=52.98 Aligned_cols=7 Identities=43% Similarity=0.762 Sum_probs=2.8
Q ss_pred CCCeeec
Q 000062 281 PLPLVRL 287 (2470)
Q Consensus 281 plplvrl 287 (2470)
|..+|-|
T Consensus 226 p~~~~~l 232 (782)
T PRK00409 226 PQSVVEL 232 (782)
T ss_pred cHHHHHH
Confidence 3334433
No 45
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=89.07 E-value=0.91 Score=57.00 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=5.9
Q ss_pred ccccccccccc
Q 000062 859 MESDFHENITE 869 (2470)
Q Consensus 859 ~dsdf~en~~E 869 (2470)
+-+.|-.+|.+
T Consensus 423 ~~s~f~~~f~w 433 (506)
T KOG2507|consen 423 RVSSFANPFSW 433 (506)
T ss_pred HHHHHhccCCC
Confidence 44556666533
No 46
>PLN02316 synthase/transferase
Probab=88.62 E-value=8.7 Score=53.70 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=4.3
Q ss_pred hhHhhhccc
Q 000062 267 RSEQVRKQE 275 (2470)
Q Consensus 267 ~~e~~rk~~ 275 (2470)
+.|+.||+.
T Consensus 120 ~~~~~~~~~ 128 (1036)
T PLN02316 120 ERENLRKRE 128 (1036)
T ss_pred hHHHHHHHH
Confidence 344555544
No 47
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=88.59 E-value=1.3 Score=57.19 Aligned_cols=9 Identities=22% Similarity=0.493 Sum_probs=3.9
Q ss_pred cccCCCCCC
Q 000062 876 WGQGRYRGN 884 (2470)
Q Consensus 876 W~qS~srgr 884 (2470)
|+...+.++
T Consensus 460 w~~~~~e~~ 468 (492)
T PF02029_consen 460 WLTKTPEGS 468 (492)
T ss_pred hhcCCCCCC
Confidence 444444444
No 48
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.46 E-value=3.4 Score=49.96 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCcCCC
Q 000062 798 DSAFGGRAVPRKEFY 812 (2470)
Q Consensus 798 Ds~fg~rspprk~~~ 812 (2470)
|++-=|+.|||+.|.
T Consensus 249 ~P~~f~t~fPR~tf~ 263 (290)
T KOG2689|consen 249 DPYSFHTGFPRVTFT 263 (290)
T ss_pred CCeeeecCCCceecc
Confidence 455567777777665
No 49
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=87.35 E-value=3.6 Score=52.67 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=10.1
Q ss_pred CCCCCCCcccccccccC
Q 000062 75 PPPLNLPSLRKEHERFD 91 (2470)
Q Consensus 75 p~plnlpslrkehe~~d 91 (2470)
+.||.--+-.++||--|
T Consensus 17 s~~l~ed~~~~~~ed~d 33 (708)
T KOG3654|consen 17 SKPLSEDPTKAPVEDPD 33 (708)
T ss_pred CcccccccccCCcCCCc
Confidence 45555445556777666
No 50
>PTZ00491 major vault protein; Provisional
Probab=87.14 E-value=11 Score=51.52 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 000062 497 GRGFPHNDPMHNFSRDKR 514 (2470)
Q Consensus 497 ~kGlL~NdpllNFGReKR 514 (2470)
.+|+.-..++-.||+...
T Consensus 583 IR~aVA~~~Fd~FHknsa 600 (850)
T PTZ00491 583 VRAAVASEPFDEFHKNSA 600 (850)
T ss_pred HHHHHhcCCHHHHhccHH
Confidence 455555566666665543
No 51
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.09 E-value=12 Score=51.87 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=36.2
Q ss_pred cCCCCCCccCCCccccccccccCCCccccccccCCCCchh--hhcccch---hHhhhcccccccccccCCCCCCCc
Q 000062 162 SGTVGPALSSFAPAEKASVLRGEDFPSLQAALPAASGSEK--KQKDGFS---QKQKQGMSQELGNNEQKDGCRFNA 232 (2470)
Q Consensus 162 ~~~~~~~~~~~~~~ek~~vlrgedfpsl~a~lp~~~~~~~--k~k~~~~---qk~kq~~~~~~~~~e~~~~~~~~~ 232 (2470)
+|.++|-...|..+|+-+ --+|+.|-+++++.. ++-...- .||-|.+-+.|..-|.+-.+-.++
T Consensus 1193 tGv~gay~s~f~~me~kl-------~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~ 1261 (1758)
T KOG0994|consen 1193 TGVLGAYASRFLDMEEKL-------EEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNS 1261 (1758)
T ss_pred ccCchhhHhHHHHHHHHH-------HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Confidence 566666555555554332 224566656666555 3322222 377788888888777665554443
No 52
>PTZ00491 major vault protein; Provisional
Probab=86.00 E-value=21 Score=48.95 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=6.6
Q ss_pred CCcccccCCCC
Q 000062 150 DGVGVYVPPSV 160 (2470)
Q Consensus 150 ~~~~~~~~~s~ 160 (2470)
++.|.|+|..-
T Consensus 198 t~~gaylP~v~ 208 (850)
T PTZ00491 198 RTPGAYLPGVF 208 (850)
T ss_pred eccccccCCCc
Confidence 44667776553
No 53
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=85.30 E-value=16 Score=46.07 Aligned_cols=13 Identities=8% Similarity=-0.041 Sum_probs=8.7
Q ss_pred ccCCCCCCcccCC
Q 000062 751 QFARDNSSGFLDR 763 (2470)
Q Consensus 751 ~tSr~~dSs~ldR 763 (2470)
+.|.+.|+.+++.
T Consensus 408 pnp~pidp~~lee 420 (442)
T PF06637_consen 408 PNPPPIDPASLEE 420 (442)
T ss_pred CCCCCCChHHHHH
Confidence 4666777777755
No 54
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.05 E-value=13 Score=49.26 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=9.1
Q ss_pred ccCCCccccccccC
Q 000062 182 RGEDFPSLQAALPA 195 (2470)
Q Consensus 182 rgedfpsl~a~lp~ 195 (2470)
-|+-|-++|++.++
T Consensus 472 ~G~~~~s~qs~~sp 485 (1187)
T KOG0579|consen 472 QGSTFFSPQSSASP 485 (1187)
T ss_pred cCccccCccccCCC
Confidence 46677777777633
No 55
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=84.74 E-value=1.7 Score=54.69 Aligned_cols=8 Identities=50% Similarity=0.953 Sum_probs=4.0
Q ss_pred CCCCcCCC
Q 000062 805 AVPRKEFY 812 (2470)
Q Consensus 805 spprk~~~ 812 (2470)
.|||++|.
T Consensus 360 pyPRReft 367 (506)
T KOG2507|consen 360 PYPRREFT 367 (506)
T ss_pred cccccccc
Confidence 35555554
No 56
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=84.65 E-value=52 Score=43.20 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=7.0
Q ss_pred ccccCCCCCCCCCCCC
Q 000062 318 AYWEGDFDMPRPSVLP 333 (2470)
Q Consensus 318 ~~w~~~fd~p~~~~~p 333 (2470)
+||+..|+-.-...+|
T Consensus 26 A~~n~~f~d~f~~~vP 41 (582)
T PF09731_consen 26 AKQNDNFRDFFEEYVP 41 (582)
T ss_pred hhcChHHHHHHHHhCC
Confidence 3455555433333345
No 57
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=83.79 E-value=44 Score=46.12 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=20.1
Q ss_pred ccccCCCCCCCCCCCCCCC--CCccccccCcCCccccccccccccccCCC
Q 000062 318 AYWEGDFDMPRPSVLPHKP--AHNVFERWGQRDSETGKVSSSEVARVDPF 365 (2470)
Q Consensus 318 ~~w~~~fd~p~~~~~p~k~--~~~~~~~~g~r~~e~~k~~~~e~~~~~~~ 365 (2470)
+-|+++-=.++--|||--. --.+| +|-||+.---+.-||-.
T Consensus 752 pvy~eepfvF~KVvLpeLA~lRiavy-------eEggK~ig~RIlpvd~l 794 (1189)
T KOG1265|consen 752 PVYEEEPFVFRKVVLPELASLRIAVY-------EEGGKFIGQRILPVDGL 794 (1189)
T ss_pred cccccCCcccceecccchhheeeeee-------ccCCceeeeeccchhcc
Confidence 4466553334445777321 11222 36666665555555543
No 58
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.57 E-value=31 Score=45.58 Aligned_cols=7 Identities=29% Similarity=0.549 Sum_probs=2.8
Q ss_pred cccccCc
Q 000062 340 VFERWGQ 346 (2470)
Q Consensus 340 ~~~~~g~ 346 (2470)
+|.+-|+
T Consensus 95 v~t~Dg~ 101 (548)
T COG2268 95 VYTKDGM 101 (548)
T ss_pred eEecCCC
Confidence 3443344
No 59
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=82.90 E-value=36 Score=50.58 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=4.8
Q ss_pred CCccccccc
Q 000062 185 DFPSLQAAL 193 (2470)
Q Consensus 185 dfpsl~a~l 193 (2470)
||.-|....
T Consensus 302 ~Y~f~~~~~ 310 (1930)
T KOG0161|consen 302 DYKFLSNGE 310 (1930)
T ss_pred hhhhhcccc
Confidence 555555544
No 60
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=82.86 E-value=1.1e+02 Score=39.34 Aligned_cols=7 Identities=57% Similarity=0.857 Sum_probs=4.9
Q ss_pred CCCCCCc
Q 000062 537 FDGRDPF 543 (2470)
Q Consensus 537 fdG~Dp~ 543 (2470)
|+|-|..
T Consensus 142 F~GEDl~ 148 (379)
T PF05914_consen 142 FDGEDLN 148 (379)
T ss_pred cccccCC
Confidence 6677776
No 61
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=82.77 E-value=1.5e+02 Score=41.39 Aligned_cols=11 Identities=27% Similarity=0.135 Sum_probs=5.1
Q ss_pred CCCccccccCC
Q 000062 524 QDDPFMKDFGS 534 (2470)
Q Consensus 524 ~EDpF~kDfga 534 (2470)
..|+|..++..
T Consensus 310 ~~~~~~~~~~~ 320 (980)
T KOG0980|consen 310 PLDLFEAEPAS 320 (980)
T ss_pred CccccccCccc
Confidence 44444445543
No 62
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=82.38 E-value=42 Score=46.29 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=8.0
Q ss_pred ccccCcCCccccccccccc
Q 000062 341 FERWGQRDSETGKVSSSEV 359 (2470)
Q Consensus 341 ~~~~g~r~~e~~k~~~~e~ 359 (2470)
|-++--++|-.--|+..|+
T Consensus 740 ~rtrt~~~n~~npvy~eep 758 (1189)
T KOG1265|consen 740 FRTRTVQGNSFNPVYEEEP 758 (1189)
T ss_pred hhhccccCCCCCcccccCC
Confidence 4333334444444444433
No 63
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=81.73 E-value=1.1e+02 Score=39.41 Aligned_cols=13 Identities=8% Similarity=0.018 Sum_probs=6.0
Q ss_pred HHHHhhhhhhhcc
Q 000062 548 VGVVKKKKDVLKQ 560 (2470)
Q Consensus 548 ~alVKKKKEaeKq 560 (2470)
...++.++++.+.
T Consensus 80 ~~qlr~~rtel~~ 92 (499)
T COG4372 80 RPQLRALRTELGT 92 (499)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555544443
No 64
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=81.61 E-value=46 Score=49.57 Aligned_cols=11 Identities=9% Similarity=-0.197 Sum_probs=6.4
Q ss_pred ccCCCCCCCCC
Q 000062 253 RENGGINHDTG 263 (2470)
Q Consensus 253 ~~~~~~~~~~g 263 (2470)
+-++-..|...
T Consensus 454 DiaGFEIfe~n 464 (1930)
T KOG0161|consen 454 DIAGFEIFEFN 464 (1930)
T ss_pred eeccccccCcC
Confidence 55555666554
No 65
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=81.16 E-value=23 Score=44.18 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=9.9
Q ss_pred ccCCcccccCCCCCCcccCC
Q 000062 744 FDMSSRNQFARDNSSGFLDR 763 (2470)
Q Consensus 744 ~~mg~Rv~tSr~~dSs~ldR 763 (2470)
.+.+-+.+.+--..++-.||
T Consensus 290 ~~v~g~~~p~k~~~~sk~dr 309 (361)
T KOG3634|consen 290 EEVTGRWKPPKVQISSKYDR 309 (361)
T ss_pred hhhcCCCCCceeehhhhhhh
Confidence 34445555554444555555
No 66
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=81.01 E-value=68 Score=41.49 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=11.8
Q ss_pred cccCcchhhcccccccccccCC
Q 000062 827 GILEPHMDEFTVSRGQRWNMSG 848 (2470)
Q Consensus 827 G~tD~~LedYr~~~p~rWni~G 848 (2470)
.+....++=-......||.-++
T Consensus 244 ~~~~~~~~~~~~~~~~rws~~~ 265 (445)
T PRK13428 244 KVGAPTLEVLRTAVSQRWSANS 265 (445)
T ss_pred CCCHHHHHHHHHHHhCccCccc
Confidence 3344444545556667775554
No 67
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.49 E-value=42 Score=48.64 Aligned_cols=6 Identities=50% Similarity=1.049 Sum_probs=3.1
Q ss_pred ccCCCC
Q 000062 361 RVDPFG 366 (2470)
Q Consensus 361 ~~~~~~ 366 (2470)
.+|||+
T Consensus 57 rln~~~ 62 (1353)
T TIGR02680 57 RLEPDG 62 (1353)
T ss_pred ccCCCC
Confidence 445555
No 68
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.98 E-value=56 Score=47.85 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=7.0
Q ss_pred CCCCCCCCceee
Q 000062 1288 SLIPSPFPAIQI 1299 (2470)
Q Consensus 1288 sLipspvPAIQI 1299 (2470)
.+.+.|=|+|+-
T Consensus 830 ~f~~~pe~~~~~ 841 (1486)
T PRK04863 830 AFEADPEAELRQ 841 (1486)
T ss_pred hcCCCcHHHHHH
Confidence 456666666653
No 69
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=79.17 E-value=17 Score=44.75 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=5.2
Q ss_pred CCCccccccCcC
Q 000062 336 PAHNVFERWGQR 347 (2470)
Q Consensus 336 ~~~~~~~~~g~r 347 (2470)
|++-.||+|=-|
T Consensus 3 ~~NiM~D~RV~R 14 (291)
T PF06098_consen 3 YGNIMYDRRVVR 14 (291)
T ss_pred cccccCCCCcCC
Confidence 344445544333
No 70
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.01 E-value=47 Score=44.39 Aligned_cols=13 Identities=8% Similarity=-0.140 Sum_probs=5.1
Q ss_pred CCCCCCCccccCC
Q 000062 735 SDSSGLHRSFDMS 747 (2470)
Q Consensus 735 sDSSS~nRs~~mg 747 (2470)
.|.-...+...++
T Consensus 545 GDvi~v~~~sG~g 557 (652)
T COG2433 545 GDVILVEDPSGGG 557 (652)
T ss_pred CcEEEEEcCCCcc
Confidence 3333344443333
No 71
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.89 E-value=1.2e+02 Score=39.44 Aligned_cols=21 Identities=14% Similarity=0.022 Sum_probs=10.0
Q ss_pred CCCCcchhhHHHHhhhhhhhc
Q 000062 539 GRDPFSAGLVGVVKKKKDVLK 559 (2470)
Q Consensus 539 G~Dp~t~~m~alVKKKKEaeK 559 (2470)
+.+-+...-+.++++|.....
T Consensus 215 e~r~di~~kv~flerkv~ele 235 (502)
T KOG0982|consen 215 EERIDIERKVRFLERKVQELE 235 (502)
T ss_pred chhhhHHHHHHHHHHHHHHhh
Confidence 333333334455666665444
No 72
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=78.85 E-value=68 Score=40.65 Aligned_cols=7 Identities=29% Similarity=0.453 Sum_probs=2.7
Q ss_pred cCccccc
Q 000062 470 YGSEQYN 476 (2470)
Q Consensus 470 ygi~Qyg 476 (2470)
.||.-|+
T Consensus 140 mGi~I~s 146 (428)
T KOG2668|consen 140 MGIVIYS 146 (428)
T ss_pred cceEEEE
Confidence 3343333
No 73
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.81 E-value=88 Score=43.99 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=16.9
Q ss_pred ccccCCCC-CC-CCCCcchhhHHHHhhhhhhhcc
Q 000062 529 MKDFGSSS-FD-GRDPFSAGLVGVVKKKKDVLKQ 560 (2470)
Q Consensus 529 ~kDfgasg-fd-G~Dp~t~~m~alVKKKKEaeKq 560 (2470)
+|.|...| .. |-.+..++++..+.+-.++..+
T Consensus 652 GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~ 685 (1174)
T KOG0933|consen 652 GDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKE 685 (1174)
T ss_pred CceeCCCCcccCCCCCCcccHHHHHHHHHHHHHH
Confidence 35666666 22 4444455555555555555443
No 74
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=77.32 E-value=16 Score=45.45 Aligned_cols=7 Identities=43% Similarity=0.396 Sum_probs=3.2
Q ss_pred ccccccc
Q 000062 780 SSTFITQ 786 (2470)
Q Consensus 780 sS~F~Pq 786 (2470)
+++|-+|
T Consensus 304 ~sk~drq 310 (361)
T KOG3634|consen 304 SSKYDRQ 310 (361)
T ss_pred hhhhhhH
Confidence 4445443
No 75
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=77.21 E-value=99 Score=40.00 Aligned_cols=15 Identities=27% Similarity=0.250 Sum_probs=7.1
Q ss_pred cCccCCCcccccccC
Q 000062 997 TSRCDSQSSLSVSSA 1011 (2470)
Q Consensus 997 t~~~dsQsSLSvssp 1011 (2470)
+-+|.|=.+-.|=||
T Consensus 383 g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSP 397 (459)
T ss_pred ccccccccceeEECC
Confidence 444544444444444
No 76
>PRK04863 mukB cell division protein MukB; Provisional
Probab=76.08 E-value=73 Score=46.78 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=4.9
Q ss_pred cccccCCCCCCc
Q 000062 842 QRWNMSGDGDHY 853 (2470)
Q Consensus 842 ~rWni~GDgDt~ 853 (2470)
++.=|.||-|-|
T Consensus 734 d~~li~~~~~~~ 745 (1486)
T PRK04863 734 DLYLIEGDPDSF 745 (1486)
T ss_pred ceeeecCChhHH
Confidence 444444444433
No 77
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=75.51 E-value=0.9 Score=52.30 Aligned_cols=6 Identities=67% Similarity=0.911 Sum_probs=1.9
Q ss_pred CCCCCC
Q 000062 762 DRGKPF 767 (2470)
Q Consensus 762 dR~Kpi 767 (2470)
||||+|
T Consensus 149 drGkfI 154 (188)
T PF09756_consen 149 DRGKFI 154 (188)
T ss_dssp TT--EE
T ss_pred CCCCeE
Confidence 554433
No 78
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=74.40 E-value=1.3e+02 Score=41.58 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=14.0
Q ss_pred cccccCcCCccCC--ccccccccchh
Q 000062 1061 NMIAPASSISAGD--DEEWAVENDER 1084 (2470)
Q Consensus 1061 ~~~~~~s~vs~~~--d~ew~~~~~e~ 1084 (2470)
-+|+|-.-|+-+| .+-|.+.+---
T Consensus 812 grmnGwlRVyRdd~~~stwl~~wamm 837 (1265)
T KOG0976|consen 812 GRMNGWLRVYRDDAEASTWLLGWAMM 837 (1265)
T ss_pred hhcccceeeeccccchhHHHHHHHHh
Confidence 3566655555555 55677766544
No 79
>PRK12472 hypothetical protein; Provisional
Probab=74.08 E-value=38 Score=44.27 Aligned_cols=24 Identities=17% Similarity=-0.014 Sum_probs=14.5
Q ss_pred ccCccccccccCCcccccCCCCCCCCCCCCCCCCC
Q 000062 469 QYGSEQYNRFRGDAFQRSSASKSSFSSGGRGFPHN 503 (2470)
Q Consensus 469 ~ygi~QygrYrG~A~Q~ss~SKss~s~G~kGlL~N 503 (2470)
.|+||..+|+ |. .-|+|-..++..
T Consensus 122 GiaIHGt~~p-G~----------paSHGCVRLp~a 145 (508)
T PRK12472 122 GIALHGGPLP-GY----------AASHGCVRMPYG 145 (508)
T ss_pred eEEEecCCCC-CC----------CCCCcccCCCHH
Confidence 5788887765 21 346776666544
No 80
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=73.50 E-value=1e+02 Score=42.11 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=9.9
Q ss_pred CCccccCCcccccCCCCC
Q 000062 740 LHRSFDMSSRNQFARDNS 757 (2470)
Q Consensus 740 ~nRs~~mg~Rv~tSr~~d 757 (2470)
+.+.++++.|+-.+..-+
T Consensus 686 v~rl~ragrrvgi~~~~~ 703 (828)
T PF04094_consen 686 VSRLERAGRRVGISVRRD 703 (828)
T ss_pred HHHHHhhccccccccccc
Confidence 445556666665554333
No 81
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=73.49 E-value=1.6e+02 Score=37.18 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=7.2
Q ss_pred CCCCCcccccccc
Q 000062 376 GREGNMWRASSSL 388 (2470)
Q Consensus 376 g~e~nsWR~sspl 388 (2470)
|+.-++|+..+.+
T Consensus 53 gr~r~~~~lr~~~ 65 (340)
T KOG3756|consen 53 GRGRGSLLLRRGF 65 (340)
T ss_pred cchhhhhhhhhhh
Confidence 4444566666554
No 82
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=73.41 E-value=55 Score=46.53 Aligned_cols=15 Identities=13% Similarity=0.430 Sum_probs=6.4
Q ss_pred ccCccccccccCCccc
Q 000062 469 QYGSEQYNRFRGDAFQ 484 (2470)
Q Consensus 469 ~ygi~QygrYrG~A~Q 484 (2470)
++.+.|.- |.|-.|=
T Consensus 389 ~f~Gn~LP-FIGfTy~ 403 (1317)
T KOG0612|consen 389 AFSGNHLP-FIGFTYT 403 (1317)
T ss_pred CCcCCcCC-eeeeeec
Confidence 44444444 4444443
No 83
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=73.28 E-value=57 Score=44.49 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=9.1
Q ss_pred CCccccCCCCCCCccc
Q 000062 69 VPKLSVPPPLNLPSLR 84 (2470)
Q Consensus 69 ~~klsvp~plnlpslr 84 (2470)
--|-|--.|+| |-++
T Consensus 229 elkrSTel~in-PD~~ 243 (1424)
T KOG4572|consen 229 ELKRSTELPIN-PDEK 243 (1424)
T ss_pred hhccccccCCC-CCCc
Confidence 55566666777 5544
No 84
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.93 E-value=33 Score=46.72 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=4.6
Q ss_pred CcccccccccC
Q 000062 81 PSLRKEHERFD 91 (2470)
Q Consensus 81 pslrkehe~~d 91 (2470)
|-+.-.|-.+-
T Consensus 83 ~~f~v~~i~~n 93 (717)
T PF10168_consen 83 PLFEVHQISLN 93 (717)
T ss_pred CceeEEEEEEC
Confidence 33444444433
No 85
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=72.79 E-value=1.5e+02 Score=41.32 Aligned_cols=6 Identities=33% Similarity=0.739 Sum_probs=3.4
Q ss_pred cccccc
Q 000062 780 SSTFIT 785 (2470)
Q Consensus 780 sS~F~P 785 (2470)
.-+|+|
T Consensus 574 r~tflp 579 (1164)
T TIGR02169 574 RATFLP 579 (1164)
T ss_pred Ceeecc
Confidence 455665
No 86
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=71.83 E-value=1.2e+02 Score=42.42 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=16.4
Q ss_pred ccCCCCccccccchhhccccc
Q 000062 713 MADVGDWEDGERMVERITTSA 733 (2470)
Q Consensus 713 EkDl~DwEdsERmvERItTSs 733 (2470)
++.+.|.|..+.|.|.+..++
T Consensus 468 eetv~dlEalee~~EQL~Esn 488 (1243)
T KOG0971|consen 468 EETVGDLEALEEMNEQLQESN 488 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888988887664
No 87
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=70.60 E-value=2.5e+02 Score=36.47 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=11.6
Q ss_pred ccccccCCCCchhhhcc
Q 000062 189 LQAALPAASGSEKKQKD 205 (2470)
Q Consensus 189 l~a~lp~~~~~~~k~k~ 205 (2470)
|||..|+--+++.|-|+
T Consensus 82 lqagtpplqVnEEk~~a 98 (672)
T KOG4722|consen 82 LQAGTPPLQVNEEKEKA 98 (672)
T ss_pred HhcCCCCCCCchhhccc
Confidence 67777777777666554
No 88
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=70.53 E-value=2.4e+02 Score=36.31 Aligned_cols=13 Identities=15% Similarity=0.084 Sum_probs=5.3
Q ss_pred CCCcccccCCCCC
Q 000062 512 DKRPLLKREEPYQ 524 (2470)
Q Consensus 512 eKRl~~KsMKp~~ 524 (2470)
|++....+|+.|.
T Consensus 131 d~~~G~Ss~Q~F~ 143 (379)
T PF05914_consen 131 DPRCGPSSLQKFD 143 (379)
T ss_pred CCccCchhccccc
Confidence 3334444444443
No 89
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=70.32 E-value=79 Score=44.98 Aligned_cols=8 Identities=38% Similarity=0.297 Sum_probs=3.2
Q ss_pred CCCCCCcc
Q 000062 1467 KKSSGRLH 1474 (2470)
Q Consensus 1467 ~~~~~~~~ 1474 (2470)
||+.+.+.
T Consensus 1187 KKSWK~I~ 1194 (1293)
T KOG0996|consen 1187 KKSWKNIS 1194 (1293)
T ss_pred hhhhhhcc
Confidence 44444433
No 90
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=70.22 E-value=1.5e+02 Score=40.01 Aligned_cols=9 Identities=56% Similarity=0.962 Sum_probs=5.1
Q ss_pred ccccccccC
Q 000062 187 PSLQAALPA 195 (2470)
Q Consensus 187 psl~a~lp~ 195 (2470)
|++.+.||.
T Consensus 47 p~~~~~l~~ 55 (594)
T PF05667_consen 47 PSLGSSLPR 55 (594)
T ss_pred ccccCCCcc
Confidence 555555554
No 91
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=70.05 E-value=82 Score=42.92 Aligned_cols=13 Identities=8% Similarity=0.409 Sum_probs=6.6
Q ss_pred HHHHhhhhhhhcc
Q 000062 548 VGVVKKKKDVLKQ 560 (2470)
Q Consensus 548 ~alVKKKKEaeKq 560 (2470)
++.|+.+++.+..
T Consensus 430 ~~e~~ar~~~l~~ 442 (828)
T PF04094_consen 430 LAEIQAREETLDS 442 (828)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555443
No 92
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=69.86 E-value=37 Score=43.26 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=21.8
Q ss_pred ccCCCCCCCCccccCCcccccCCCCCCcccCCCCCCCcccccccCCCC-cccccc
Q 000062 732 SASSDSSGLHRSFDMSSRNQFARDNSSGFLDRGKPFNSWRRDAFESGN-SSTFIT 785 (2470)
Q Consensus 732 SsSsDSSS~nRs~~mg~Rv~tSr~~dSs~ldR~Kpi~SWrR~~flrd~-sS~F~P 785 (2470)
+-+.|...+.|.| +-...++|.|.++ ..++.+-..-|-.+. ++-|.|
T Consensus 397 ~~~~e~qyDqRlF------nq~~g~dSg~~~d-d~ynvYD~~wr~~q~~~siYrp 444 (506)
T KOG2441|consen 397 SESGEVQYDQRLF------NQGKGLDSGFADD-DEYNVYDKPWRGAQDISSIYRP 444 (506)
T ss_pred CCCCcchhhHHhh------hcccCcccccccc-ccccccccccccCCchhhhhCC
Confidence 3445555555553 2335566777766 333333333333333 444444
No 93
>PLN03188 kinesin-12 family protein; Provisional
Probab=69.47 E-value=1.6e+02 Score=42.73 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=8.6
Q ss_pred ccCCCccccccccccc
Q 000062 407 ERPSSLNREANKETKF 422 (2470)
Q Consensus 407 ~RPsSRnRGaSk~Sky 422 (2470)
++|++..=.+...+..
T Consensus 671 ~~~~~lsi~p~~~~~~ 686 (1320)
T PLN03188 671 ASPSSLSIVPVEVSPV 686 (1320)
T ss_pred CCcccccccccccccc
Confidence 4555555555555544
No 94
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=68.41 E-value=74 Score=41.44 Aligned_cols=7 Identities=29% Similarity=-0.036 Sum_probs=3.6
Q ss_pred ccCCccc
Q 000062 478 FRGDAFQ 484 (2470)
Q Consensus 478 YrG~A~Q 484 (2470)
|+-..||
T Consensus 261 ~il~ff~ 267 (446)
T PF07227_consen 261 AILQFFQ 267 (446)
T ss_pred HHHHHHh
Confidence 4455555
No 95
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.62 E-value=1.4e+02 Score=40.43 Aligned_cols=6 Identities=0% Similarity=0.174 Sum_probs=2.3
Q ss_pred cccccc
Q 000062 458 NSQRAE 463 (2470)
Q Consensus 458 s~r~~E 463 (2470)
+.|+..
T Consensus 271 S~r~~~ 276 (652)
T COG2433 271 SRRGID 276 (652)
T ss_pred ccccCC
Confidence 333333
No 96
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=65.45 E-value=95 Score=43.20 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=9.4
Q ss_pred ecccccccccCCCC
Q 000062 1328 FGQLRYTSPVSQGV 1341 (2470)
Q Consensus 1328 FGQlry~~pi~q~v 1341 (2470)
|-|.|.-+-++||-
T Consensus 1108 ~~qer~er~~Lkg~ 1121 (1243)
T KOG0971|consen 1108 ISQERHERSILKGA 1121 (1243)
T ss_pred HHHHHHHHHHHhHH
Confidence 55677777777764
No 97
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=64.21 E-value=1.6e+02 Score=35.89 Aligned_cols=82 Identities=32% Similarity=0.662 Sum_probs=45.5
Q ss_pred CCCCCcccccCCCCCCccCCCCCccccCCCCCCCCcCcccccccCCCCCCCCCcCCcccccC---CCCCCCCCCCcCCCC
Q 000062 2221 TNLPAPIQHLAPGSPLLPLASPLAMFDVSPFQPPSDMSVQARWSHVPAPPLQSVPMSMPLQR---PTDGVLPSQFNHGTS 2297 (2470)
Q Consensus 2221 ~~~p~~~qhl~pg~~~~p~~sp~~mfd~~pfq~~~~m~~q~~w~hvp~~p~~~~p~s~~l~q---~~~~~~~~q~~~~~~ 2297 (2470)
+-|| |-|=-||.+-||=.-+++-||- . +--.||. +|...||-.-|+-. ++++-++.-+|.+.
T Consensus 187 p~mp--i~~g~p~~~p~pg~p~~s~~~~----~----~~~~r~~----~p~~~vp~~pp~~~~~~~~~~q~~~~~~qg~- 251 (341)
T KOG2893|consen 187 PRMP--IGHGPPGGPPMPGPPQRSRFDQ----P----DGGDRWG----PPMRGVPRTPPYENEHEHQDYQAPDDYNQGG- 251 (341)
T ss_pred CcCc--CCCCCCCCCCCCCCCccccccC----C----CCCCCCC----CCcCCCCCCCCcCCcccccccccchhhhcCC-
Confidence 3466 6777777777776677777753 1 1125775 45555555444433 12444444455544
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCcc
Q 000062 2298 ADQSSASNRFPESRNSTPSDSSQNFH 2323 (2470)
Q Consensus 2298 ~d~~~~~~rf~~~~~s~~~~~~~~f~ 2323 (2470)
-..||.+..-+++.. -..|+
T Consensus 252 -----~~~~fr~~~r~~p~~-~s~~~ 271 (341)
T KOG2893|consen 252 -----YDDRFREGDRGGPPG-GSRFD 271 (341)
T ss_pred -----ccccccccccCCCCC-CCCCC
Confidence 245788877666543 34464
No 98
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=64.05 E-value=3.2e+02 Score=35.69 Aligned_cols=17 Identities=6% Similarity=0.450 Sum_probs=8.8
Q ss_pred chhhcccccccc--cccCC
Q 000062 832 HMDEFTVSRGQR--WNMSG 848 (2470)
Q Consensus 832 ~LedYr~~~p~r--Wni~G 848 (2470)
.|+-.++.+..+ |+.-+
T Consensus 450 ~l~al~~ekl~L~~w~~a~ 468 (552)
T KOG2129|consen 450 RLEALRTEKLPLIAWRLAA 468 (552)
T ss_pred hhhhhcccccchHHHHHhh
Confidence 444455555554 75554
No 99
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=63.84 E-value=3.2e+02 Score=38.16 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=9.3
Q ss_pred CCCCccccceeee
Q 000062 1534 PRRPRRQRTEFRV 1546 (2470)
Q Consensus 1534 ~R~~~~~rtefrv 1546 (2470)
.++.+--|||||-
T Consensus 1197 ~~tvlaeRt~l~c 1209 (1265)
T KOG0976|consen 1197 PHTVLAERTELRC 1209 (1265)
T ss_pred chhhhhhhhheee
Confidence 3457778899874
No 100
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.59 E-value=2.4e+02 Score=40.62 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=3.7
Q ss_pred hhhcccc
Q 000062 1228 LMDHLNA 1234 (2470)
Q Consensus 1228 ~~~~~~a 1234 (2470)
++|++|+
T Consensus 1168 lVDslDP 1174 (1293)
T KOG0996|consen 1168 LVDSLDP 1174 (1293)
T ss_pred eeccCCC
Confidence 4455555
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=62.82 E-value=2.7e+02 Score=36.42 Aligned_cols=8 Identities=38% Similarity=0.119 Sum_probs=3.4
Q ss_pred cccccccC
Q 000062 1004 SSLSVSSA 1011 (2470)
Q Consensus 1004 sSLSvssp 1011 (2470)
.+|.++++
T Consensus 354 ~~lLsssR 361 (459)
T KOG0288|consen 354 LELLSSSR 361 (459)
T ss_pred eEEeeecC
Confidence 34444443
No 102
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=62.46 E-value=34 Score=43.57 Aligned_cols=18 Identities=11% Similarity=-0.224 Sum_probs=9.0
Q ss_pred ccCCCCCCCCccccCCcc
Q 000062 732 SASSDSSGLHRSFDMSSR 749 (2470)
Q Consensus 732 SsSsDSSS~nRs~~mg~R 749 (2470)
.+-.++.+..|-...+..
T Consensus 412 ~~g~dSg~~~dd~ynvYD 429 (506)
T KOG2441|consen 412 GKGLDSGFADDDEYNVYD 429 (506)
T ss_pred ccCccccccccccccccc
Confidence 444566665555444433
No 103
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=61.49 E-value=2.1e+02 Score=37.45 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=7.0
Q ss_pred cCCCccccccccccc
Q 000062 408 RPSSLNREANKETKF 422 (2470)
Q Consensus 408 RPsSRnRGaSk~Sky 422 (2470)
++..|+|....+|+-
T Consensus 97 ~~l~r~r~~~~~s~L 111 (429)
T PF12297_consen 97 RPLTRQRVQRHESKL 111 (429)
T ss_pred cchhhhccccccCCC
Confidence 444444444444443
No 104
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=61.31 E-value=2.7e+02 Score=40.13 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=4.1
Q ss_pred CCCCCCcccc
Q 000062 916 RVLPPPTLTS 925 (2470)
Q Consensus 916 RVlPPP~~~s 925 (2470)
.|-|.-++|+
T Consensus 645 ~~~~~G~~tG 654 (1163)
T COG1196 645 LVEPSGSITG 654 (1163)
T ss_pred EEeCCeeeec
Confidence 3444443433
No 105
>PRK03918 chromosome segregation protein; Provisional
Probab=61.24 E-value=3.7e+02 Score=37.11 Aligned_cols=7 Identities=43% Similarity=0.601 Sum_probs=4.6
Q ss_pred ccccccc
Q 000062 349 SETGKVS 355 (2470)
Q Consensus 349 ~e~~k~~ 355 (2470)
|-+||.+
T Consensus 32 nG~GKSt 38 (880)
T PRK03918 32 NGSGKSS 38 (880)
T ss_pred CCCCHHH
Confidence 6677755
No 106
>PF15558 DUF4659: Domain of unknown function (DUF4659)
Probab=60.73 E-value=4.9e+02 Score=33.85 Aligned_cols=6 Identities=17% Similarity=0.661 Sum_probs=2.2
Q ss_pred hhhhhc
Q 000062 703 GLAKER 708 (2470)
Q Consensus 703 qkrkEK 708 (2470)
.+..++
T Consensus 325 qi~reK 330 (376)
T PF15558_consen 325 QISREK 330 (376)
T ss_pred HHHHHH
Confidence 333333
No 107
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=60.69 E-value=1.7e+02 Score=38.19 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=4.5
Q ss_pred ccCCCCCCCCC
Q 000062 531 DFGSSSFDGRD 541 (2470)
Q Consensus 531 DfgasgfdG~D 541 (2470)
=||.+-.+++.
T Consensus 202 LFGpp~~~~~n 212 (575)
T KOG4403|consen 202 LFGPPYKTNHN 212 (575)
T ss_pred EecCCcCCCcc
Confidence 34443333433
No 108
>COG4499 Predicted membrane protein [Function unknown]
Probab=59.71 E-value=23 Score=44.94 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=13.9
Q ss_pred hhhHHHHhhhhhhhcccccCCchh
Q 000062 545 AGLVGVVKKKKDVLKQTDFHDPVR 568 (2470)
Q Consensus 545 ~~m~alVKKKKEaeKqaE~EEKqR 568 (2470)
.-+.++++++++..--...-...|
T Consensus 344 ~~~~Al~k~~eevksn~~lsg~~r 367 (434)
T COG4499 344 LTLLALTKLYEEVKSNTDLSGDKR 367 (434)
T ss_pred hHHHHHHHHHHHHhcccCCCchHH
Confidence 557788777776655344433333
No 109
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=58.53 E-value=3.9e+02 Score=35.72 Aligned_cols=13 Identities=38% Similarity=0.710 Sum_probs=7.7
Q ss_pred CCCCCcchhhHHH
Q 000062 538 DGRDPFSAGLVGV 550 (2470)
Q Consensus 538 dG~Dp~t~~m~al 550 (2470)
.-.||..+.-...
T Consensus 77 ~~pDPLsPgE~~l 89 (508)
T PF00901_consen 77 EPPDPLSPGEQGL 89 (508)
T ss_pred CCCCCCCHhHHHH
Confidence 3677876555443
No 110
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=57.86 E-value=4.2e+02 Score=36.61 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=7.0
Q ss_pred ccccchhhhccccc
Q 000062 1078 AVENDERLHEQEEY 1091 (2470)
Q Consensus 1078 ~~~~~e~~~eqeey 1091 (2470)
+.++++...++++|
T Consensus 893 T~e~e~l~ek~~~~ 906 (961)
T KOG4673|consen 893 TAECEKLREKADRV 906 (961)
T ss_pred HHHHHHHHHHHHhh
Confidence 44444555555554
No 111
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=57.68 E-value=3.9e+02 Score=38.70 Aligned_cols=6 Identities=33% Similarity=0.739 Sum_probs=2.2
Q ss_pred cccccc
Q 000062 780 SSTFIT 785 (2470)
Q Consensus 780 sS~F~P 785 (2470)
.-+|+|
T Consensus 568 r~tflp 573 (1163)
T COG1196 568 RATFLP 573 (1163)
T ss_pred ccccCc
Confidence 333433
No 112
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.52 E-value=3e+02 Score=37.67 Aligned_cols=15 Identities=20% Similarity=0.058 Sum_probs=7.2
Q ss_pred CCCCcchhHhhhccc
Q 000062 261 DTGSARRSEQVRKQE 275 (2470)
Q Consensus 261 ~~g~~~~~e~~rk~~ 275 (2470)
.+|-.|.-=-.||+-
T Consensus 210 SLGITCIELAERkPP 224 (948)
T KOG0577|consen 210 SLGITCIELAERKPP 224 (948)
T ss_pred eccchhhhhhhcCCC
Confidence 345555444445543
No 113
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=55.05 E-value=3e+02 Score=38.34 Aligned_cols=7 Identities=29% Similarity=0.938 Sum_probs=3.6
Q ss_pred CCCcccc
Q 000062 291 SDWADDE 297 (2470)
Q Consensus 291 sdwadde 297 (2470)
-.||-+-
T Consensus 511 eEWaga~ 517 (1424)
T KOG4572|consen 511 EEWAGAH 517 (1424)
T ss_pred HHHHHhh
Confidence 3566543
No 114
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=53.71 E-value=1.5e+02 Score=38.77 Aligned_cols=6 Identities=17% Similarity=0.180 Sum_probs=2.4
Q ss_pred cCcCCc
Q 000062 344 WGQRDS 349 (2470)
Q Consensus 344 ~g~r~~ 349 (2470)
-|-|.+
T Consensus 160 CALr~~ 165 (446)
T PF07227_consen 160 CALRHE 165 (446)
T ss_pred hhcccc
Confidence 334444
No 115
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=52.79 E-value=54 Score=42.93 Aligned_cols=11 Identities=45% Similarity=0.525 Sum_probs=4.7
Q ss_pred CCCCCcccccc
Q 000062 376 GREGNMWRASS 386 (2470)
Q Consensus 376 g~e~nsWR~ss 386 (2470)
||+||+-.+.-
T Consensus 352 gr~G~Aivfl~ 362 (567)
T KOG0345|consen 352 GREGNAIVFLN 362 (567)
T ss_pred cCccceEEEec
Confidence 44444444333
No 116
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=51.74 E-value=2e+02 Score=39.50 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=9.5
Q ss_pred cCCCCCCCCCcc
Q 000062 912 MRHPRVLPPPTL 923 (2470)
Q Consensus 912 mRqPRVlPPP~~ 923 (2470)
||++-|+++|.-
T Consensus 440 ~~~~~~~~~p~~ 451 (916)
T KOG0249|consen 440 MDRMGVMTLPSD 451 (916)
T ss_pred ccCCccccCccc
Confidence 688899998843
No 117
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=51.41 E-value=90 Score=38.53 Aligned_cols=9 Identities=56% Similarity=1.051 Sum_probs=3.8
Q ss_pred hcccccCCC
Q 000062 272 RKQEEYFPG 280 (2470)
Q Consensus 272 rk~~~~~~g 280 (2470)
|-..+||-|
T Consensus 17 ~~~~~~f~~ 25 (379)
T COG5269 17 RIHSEYFKG 25 (379)
T ss_pred ChHHHHhcc
Confidence 333444444
No 118
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=51.23 E-value=7.5e+02 Score=33.11 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=16.4
Q ss_pred CCccccccccCCCCchh-hhcccchh-Hhhhccccccc
Q 000062 185 DFPSLQAALPAASGSEK-KQKDGFSQ-KQKQGMSQELG 220 (2470)
Q Consensus 185 dfpsl~a~lp~~~~~~~-k~k~~~~q-k~kq~~~~~~~ 220 (2470)
|.|.--.+-..+|-..| +.|..--. .-|..|++++-
T Consensus 20 dSP~cmEtssttSdl~QnEikNvkRenEsk~Tlsed~y 57 (527)
T PF15066_consen 20 DSPFCMETSSTTSDLPQNEIKNVKRENESKFTLSEDIY 57 (527)
T ss_pred CCcceeeccccccccchHHhhhhhccCcccchhhHHHH
Confidence 55655555555554333 22222111 23456666643
No 119
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=50.79 E-value=1.7e+02 Score=38.31 Aligned_cols=20 Identities=45% Similarity=0.689 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCCCCCCCCce
Q 000062 36 HSGYYGSNRARPTGGGGGGM 55 (2470)
Q Consensus 36 ~~g~~~~~~~~~~~~~gggm 55 (2470)
++|+.+...+.+|+++||||
T Consensus 71 ~s~~g~~s~~~gg~~~~~g~ 90 (641)
T KOG3915|consen 71 GSGGGGGSSGNGGGGGGGGG 90 (641)
T ss_pred CCCCCccccCCCCCCCCCCC
Confidence 33343344444444555555
No 120
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=50.59 E-value=4.2e+02 Score=38.64 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=5.7
Q ss_pred EEeeccCccccccCC
Q 000062 56 LVLSRPRSSQKAAVP 70 (2470)
Q Consensus 56 ~vlsr~r~~~~~~~~ 70 (2470)
|-|-|-+++.++-++
T Consensus 91 V~lVr~k~t~~VYAM 105 (1317)
T KOG0612|consen 91 VALVRHKSTEKVYAM 105 (1317)
T ss_pred eEEEEeeccccchhH
Confidence 333333333333333
No 121
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=48.64 E-value=5.9e+02 Score=36.90 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=12.5
Q ss_pred CccccCCCcccccccc
Q 000062 404 GICERPSSLNREANKE 419 (2470)
Q Consensus 404 Gig~RPsSRnRGaSk~ 419 (2470)
|||.|++.-+||.+-.
T Consensus 85 glG~rAs~tnRgsslK 100 (1074)
T KOG0250|consen 85 GLGGRASATNRGSSLK 100 (1074)
T ss_pred hhccccccccchhhHH
Confidence 6778998889987643
No 122
>KOG1425 consensus Microfibrillar-associated protein MFAP1 [Cytoskeleton]
Probab=47.77 E-value=96 Score=39.45 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=6.5
Q ss_pred CccccccCCCCCC
Q 000062 304 ITDRDRDHGFSKS 316 (2470)
Q Consensus 304 ~~~r~rd~gfsk~ 316 (2470)
+.+|-|++-|.+.
T Consensus 51 ~~~~~~~~a~~ee 63 (430)
T KOG1425|consen 51 IKDRKRDRAEPEE 63 (430)
T ss_pred HHHHHHHhcCcch
Confidence 4455555554444
No 123
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=47.21 E-value=5.8e+02 Score=35.61 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=5.5
Q ss_pred CCCCcccCCCCce
Q 000062 1493 KAQGLTSGSRGKR 1505 (2470)
Q Consensus 1493 k~~g~~sg~rgr~ 1505 (2470)
++-+++.-|+-||
T Consensus 823 eF~nLi~~gtdrr 835 (916)
T KOG0249|consen 823 EFNNLLALGTDRR 835 (916)
T ss_pred HHHhhhccccccc
Confidence 3344444444433
No 124
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=46.58 E-value=80 Score=41.53 Aligned_cols=8 Identities=50% Similarity=0.700 Sum_probs=4.2
Q ss_pred ccCCCCCC
Q 000062 309 RDHGFSKS 316 (2470)
Q Consensus 309 rd~gfsk~ 316 (2470)
=|-||-+.
T Consensus 170 ldmgFe~~ 177 (567)
T KOG0345|consen 170 LDMGFEAS 177 (567)
T ss_pred hcccHHHH
Confidence 35666444
No 125
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=44.76 E-value=9.9e+02 Score=33.84 Aligned_cols=7 Identities=43% Similarity=0.558 Sum_probs=3.7
Q ss_pred ccccccc
Q 000062 349 SETGKVS 355 (2470)
Q Consensus 349 ~e~~k~~ 355 (2470)
|=+||.+
T Consensus 34 nGsGKSS 40 (908)
T COG0419 34 NGAGKSS 40 (908)
T ss_pred CCCcHHH
Confidence 4456654
No 126
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=44.25 E-value=89 Score=41.22 Aligned_cols=7 Identities=29% Similarity=0.511 Sum_probs=2.5
Q ss_pred CCccccc
Q 000062 347 RDSETGK 353 (2470)
Q Consensus 347 r~~e~~k 353 (2470)
+||--|+
T Consensus 254 ~Da~gG~ 260 (591)
T KOG2505|consen 254 HDAGGGA 260 (591)
T ss_pred hhccCCc
Confidence 3333333
No 127
>PLN03188 kinesin-12 family protein; Provisional
Probab=43.12 E-value=9.9e+02 Score=35.50 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=5.6
Q ss_pred CccccCCCCCCC
Q 000062 70 PKLSVPPPLNLP 81 (2470)
Q Consensus 70 ~klsvp~plnlp 81 (2470)
+||-.|-|.+.|
T Consensus 65 ~~~~sp~p~~pp 76 (1320)
T PLN03188 65 AKLKSPLPPRPP 76 (1320)
T ss_pred ccccCCCCCCCC
Confidence 344444444444
No 128
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=42.22 E-value=3.4e+02 Score=37.71 Aligned_cols=8 Identities=13% Similarity=0.468 Sum_probs=3.1
Q ss_pred cccccccc
Q 000062 352 GKVSSSEV 359 (2470)
Q Consensus 352 ~k~~~~e~ 359 (2470)
++|..|++
T Consensus 326 ~~i~vSql 333 (809)
T KOG0247|consen 326 NQITVSQL 333 (809)
T ss_pred CceeEEee
Confidence 33333444
No 129
>PF15359 CDV3: Carnitine deficiency-associated protein 3
Probab=41.59 E-value=63 Score=36.03 Aligned_cols=62 Identities=29% Similarity=0.443 Sum_probs=33.6
Q ss_pred CCCCCCccccccccccCcccCCCCccCCCCCCCCCcccccCCCCccCCC-CCCccCCCccccccccc-cCCCccccccc
Q 000062 117 GWTKPGTAVGSDQKINDKVDQGPHSVDGLSKGNDGVGVYVPPSVRSGTV-GPALSSFAPAEKASVLR-GEDFPSLQAAL 193 (2470)
Q Consensus 117 gwtkp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~ek~~vlr-gedfpsl~a~l 193 (2470)
=|.|++++.......- +... --...++|||.||.+|-... -....+ |==|- =+-||||+||.
T Consensus 60 PWnk~~~~~~~~~~~~--v~~~-------~~p~~~~gvY~PP~~R~~~~~r~~~qg------aPdI~Se~~FPSL~sta 123 (129)
T PF15359_consen 60 PWNKSAPAQAPPAPAP--VEEP-------PEPATTSGVYRPPAARNTTTKRKRPQG------APDIFSEEQFPSLQSTA 123 (129)
T ss_pred CCcCCCCCCCCCCCCc--cCCC-------CCCCCCCceecCcccccccccCCCCCC------CCCccccccccchHHHh
Confidence 6999887544444432 1111 11356789999999993321 111111 11111 24799999874
No 130
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=41.48 E-value=64 Score=46.47 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=5.9
Q ss_pred CCCCCccccccc
Q 000062 376 GREGNMWRASSS 387 (2470)
Q Consensus 376 g~e~nsWR~ssp 387 (2470)
+-+-.+|-++..
T Consensus 1924 ~~~p~s~~a~~~ 1935 (2220)
T KOG3598|consen 1924 AAAPTSWNAPIA 1935 (2220)
T ss_pred hcCCccccccch
Confidence 344455655543
No 131
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=41.31 E-value=8.8 Score=49.92 Aligned_cols=8 Identities=25% Similarity=-0.055 Sum_probs=0.0
Q ss_pred CCcccccc
Q 000062 379 GNMWRASS 386 (2470)
Q Consensus 379 ~nsWR~ss 386 (2470)
.+.||.++
T Consensus 236 ~~s~rqlS 243 (495)
T PF12004_consen 236 DFSRRQLS 243 (495)
T ss_dssp --------
T ss_pred chhhhhcc
Confidence 44555555
No 132
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=40.98 E-value=1.2e+03 Score=32.65 Aligned_cols=9 Identities=33% Similarity=1.095 Sum_probs=5.0
Q ss_pred CCccccccc
Q 000062 767 FNSWRRDAF 775 (2470)
Q Consensus 767 i~SWrR~~f 775 (2470)
...|+.-.|
T Consensus 308 L~~WREKVF 316 (739)
T PF07111_consen 308 LSRWREKVF 316 (739)
T ss_pred HHHHHHHHH
Confidence 455666544
No 133
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=40.11 E-value=7.1e+02 Score=35.94 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCCC
Q 000062 500 FPHNDPMHNFSRD 512 (2470)
Q Consensus 500 lL~NdpllNFGRe 512 (2470)
||+.|-...|.+=
T Consensus 146 FLpQDkV~EFa~L 158 (1072)
T KOG0979|consen 146 FLPQDKVKEFARL 158 (1072)
T ss_pred hccHHHHHHHHcC
Confidence 4566666666554
No 134
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=39.27 E-value=1.1e+03 Score=31.60 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=5.5
Q ss_pred CCCCCccccc
Q 000062 376 GREGNMWRAS 385 (2470)
Q Consensus 376 g~e~nsWR~s 385 (2470)
|...|+|-..
T Consensus 235 ~~~~~Lwicl 244 (493)
T KOG0804|consen 235 GCTEDLWICL 244 (493)
T ss_pred cccccEEEEE
Confidence 4555666544
No 135
>COG5281 Phage-related minor tail protein [Function unknown]
Probab=39.00 E-value=6e+02 Score=36.04 Aligned_cols=12 Identities=50% Similarity=0.747 Sum_probs=5.0
Q ss_pred cccccccCCCcc
Q 000062 177 KASVLRGEDFPS 188 (2470)
Q Consensus 177 k~~vlrgedfps 188 (2470)
.+.++|+|-|=+
T Consensus 41 ~~~~r~~~~~~~ 52 (833)
T COG5281 41 AQGVRRGEEFNS 52 (833)
T ss_pred HHHHHHHHHHhc
Confidence 334444444443
No 136
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.68 E-value=4.4e+02 Score=33.74 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=11.9
Q ss_pred cccCCCC---CCCCCCc-chhhHHHHhh
Q 000062 530 KDFGSSS---FDGRDPF-SAGLVGVVKK 553 (2470)
Q Consensus 530 kDfgasg---fdG~Dp~-t~~m~alVKK 553 (2470)
+++.+.| ..|+|.. .|.++..|-+
T Consensus 76 d~~p~~G~lDv~GnDr~~~W~~LG~~sr 103 (469)
T KOG3878|consen 76 DRAPALGVLDVIGNDRQQHWQLLGEISR 103 (469)
T ss_pred ccCcccceeecccChHHHHHHHHhcccH
Confidence 4555555 3455554 4444444443
No 137
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=36.11 E-value=20 Score=49.55 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=12.8
Q ss_pred cccchhhhhccccccccCCCccccceecc
Q 000062 1109 ENIELTQEFEGIHLEEKGSPHMMSNLVLG 1137 (2470)
Q Consensus 1109 eni~l~~e~~~~hl~~k~~p~~~~~~vlg 1137 (2470)
.+|-|+|-.- +|-..-+..-+||.|..|
T Consensus 853 shlhlhqq~~-~h~~~~~~hpl~dpla~g 880 (982)
T PF03154_consen 853 SHLHLHQQDA-LHQASAAVHPLVDPLAAG 880 (982)
T ss_pred HHHHhhcccc-ccccccCCccccchhccc
Confidence 3444554222 444343434455666554
No 138
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=33.50 E-value=6.9e+02 Score=33.13 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=10.7
Q ss_pred chhhcccccccccccCCC
Q 000062 832 HMDEFTVSRGQRWNMSGD 849 (2470)
Q Consensus 832 ~LedYr~~~p~rWni~GD 849 (2470)
.+.|+-..+...+++|=+
T Consensus 380 qf~~e~~~k~~~~~lPy~ 397 (447)
T KOG2751|consen 380 QFADELEKKDTSFNLPYD 397 (447)
T ss_pred HHHHHHHhcCcccCCcch
Confidence 445666666666666543
No 139
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=33.32 E-value=1.6e+02 Score=39.59 Aligned_cols=7 Identities=14% Similarity=0.226 Sum_probs=3.3
Q ss_pred ccccccC
Q 000062 85 KEHERFD 91 (2470)
Q Consensus 85 kehe~~d 91 (2470)
++-|+|+
T Consensus 10 ~~~~~~~ 16 (563)
T KOG2341|consen 10 ETDEGVS 16 (563)
T ss_pred ccccccc
Confidence 3444554
No 140
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=33.16 E-value=60 Score=46.75 Aligned_cols=11 Identities=18% Similarity=0.048 Sum_probs=4.5
Q ss_pred cccccCCcccc
Q 000062 475 YNRFRGDAFQR 485 (2470)
Q Consensus 475 ygrYrG~A~Q~ 485 (2470)
|.|-|+.+.|.
T Consensus 2007 ~~mp~~qs~q~ 2017 (2220)
T KOG3598|consen 2007 PPMPMGQSMQS 2017 (2220)
T ss_pred CCCCccccccc
Confidence 33444444443
No 141
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.14 E-value=1.3e+03 Score=33.73 Aligned_cols=11 Identities=9% Similarity=-0.073 Sum_probs=4.1
Q ss_pred CCccccccccc
Q 000062 899 TDVISSFGRSR 909 (2470)
Q Consensus 899 ~d~~~sfgR~R 909 (2470)
|++-|-|.|.+
T Consensus 580 ~~~~~~~~~~i 590 (1072)
T KOG0979|consen 580 PNGSVFLKRNI 590 (1072)
T ss_pred CCCchhHHHHh
Confidence 33333333333
No 142
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=33.09 E-value=24 Score=48.85 Aligned_cols=6 Identities=17% Similarity=0.290 Sum_probs=2.4
Q ss_pred cccccC
Q 000062 152 VGVYVP 157 (2470)
Q Consensus 152 ~~~~~~ 157 (2470)
.++|-|
T Consensus 152 psipSP 157 (982)
T PF03154_consen 152 PSIPSP 157 (982)
T ss_pred CCCCCc
Confidence 334443
No 143
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.03 E-value=1.5e+03 Score=33.18 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=3.2
Q ss_pred cccccc
Q 000062 780 SSTFIT 785 (2470)
Q Consensus 780 sS~F~P 785 (2470)
-++|+|
T Consensus 1043 Fs~LLP 1048 (1174)
T KOG0933|consen 1043 FSTLLP 1048 (1174)
T ss_pred HHHhCC
Confidence 445566
No 144
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=33.01 E-value=1.5e+03 Score=31.39 Aligned_cols=19 Identities=16% Similarity=0.490 Sum_probs=11.2
Q ss_pred CCCccccccCCCCCCCCCCc
Q 000062 524 QDDPFMKDFGSSSFDGRDPF 543 (2470)
Q Consensus 524 ~EDpF~kDfgasgfdG~Dp~ 543 (2470)
.|..|++-|-.. .+.+||.
T Consensus 85 aE~afl~vye~L-~eaPDP~ 103 (629)
T KOG0963|consen 85 AEAAFLDVYEKL-IEAPDPV 103 (629)
T ss_pred hHHHHHHHHHHH-hhCCCCc
Confidence 344566555543 3478888
No 145
>PF15556 Zwint: ZW10 interactor
Probab=32.58 E-value=1e+03 Score=29.13 Aligned_cols=7 Identities=43% Similarity=0.823 Sum_probs=4.0
Q ss_pred CCCCCCc
Q 000062 537 FDGRDPF 543 (2470)
Q Consensus 537 fdG~Dp~ 543 (2470)
.-|-||.
T Consensus 45 ~QgldpL 51 (252)
T PF15556_consen 45 AQGLDPL 51 (252)
T ss_pred cccCCcc
Confidence 4456666
No 146
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.57 E-value=1.6e+03 Score=31.48 Aligned_cols=12 Identities=8% Similarity=-0.211 Sum_probs=5.2
Q ss_pred cCCcccccCCCC
Q 000062 479 RGDAFQRSSASK 490 (2470)
Q Consensus 479 rG~A~Q~ss~SK 490 (2470)
|-+...++..+-
T Consensus 401 mm~~~~~tV~s~ 412 (948)
T KOG0577|consen 401 MMMEGEHTVTSS 412 (948)
T ss_pred hhccCCCccccc
Confidence 333444455543
No 147
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=32.20 E-value=1.3e+02 Score=39.71 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=8.1
Q ss_pred ccCCCCCCCCCCc
Q 000062 531 DFGSSSFDGRDPF 543 (2470)
Q Consensus 531 DfgasgfdG~Dp~ 543 (2470)
+++..+|+-++|.
T Consensus 323 ~ir~~PFttkRPt 335 (591)
T KOG2505|consen 323 RIRTFPFTTKRPT 335 (591)
T ss_pred cccccCCCCCCCc
Confidence 4555566677776
No 148
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.94 E-value=1.2e+02 Score=38.30 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=6.8
Q ss_pred cccccCCCCCCCCC
Q 000062 908 SRYSMRHPRVLPPP 921 (2470)
Q Consensus 908 ~RysmRqPRVlPPP 921 (2470)
-|=-|.-||-.+-|
T Consensus 402 E~gA~~n~~~anKp 415 (469)
T KOG3878|consen 402 ERGAVNNPTAANKP 415 (469)
T ss_pred hhhhhcCCCCCCCC
Confidence 34445555554444
No 149
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=31.90 E-value=8.2e+02 Score=33.90 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=27.3
Q ss_pred cccCCCCCcccccchhhhhcc--ccccccCCCccccceecccccceeecC
Q 000062 1099 QEEDVPEGDDENIELTQEFEG--IHLEEKGSPHMMSNLVLGFNEGVEVPM 1146 (2470)
Q Consensus 1099 ~~edei~~~deni~l~~e~~~--~hl~~k~~p~~~~~~vlgf~egvev~m 1146 (2470)
.+.+-|.++=..=|...||+. .-+.++.-|..+|..+-|.-.=+=.+|
T Consensus 584 ~q~~li~~AFA~DdV~~eF~~eK~~~~e~e~pk~~~~~LPGWG~W~G~g~ 633 (735)
T PF04615_consen 584 EQRELIREAFAGDDVVAEFEKEKEEEIEEEKPKEIDLTLPGWGSWAGPGI 633 (735)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhhhCCcccccCCCCcccccCCCc
Confidence 345556666233355677764 223355668788887788765333333
No 150
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=31.41 E-value=78 Score=40.06 Aligned_cols=57 Identities=32% Similarity=0.646 Sum_probs=36.6
Q ss_pred ccccCCCCCCCcccccccccCCCCCCCCC-----------------C----------CCCCCCCCCCCCCCCCCCCCCCc
Q 000062 71 KLSVPPPLNLPSLRKEHERFDSSGSNGGP-----------------A----------GGGVSGAGQRPGSSGTGWTKPGT 123 (2470)
Q Consensus 71 klsvp~plnlpslrkehe~~ds~g~~~g~-----------------~----------~~~~~g~g~rp~ssg~gwtkp~~ 123 (2470)
.-.||||-..||.++...-||--|+-||. . ||-|+|-|.+-...|.||-+|+.
T Consensus 310 nE~~ppppempswqqqq~~~~~~ggrgggkg~f~~~~~~~~~~~eqgg~Rgg~Gg~~gGrGgGRGggG~GGGggyqqp~~ 389 (465)
T KOG3973|consen 310 NEMVPPPPEMPSWQQQQHTFDRQGGRGGGKGTFDRPKTHEEQVLEQGGSRGGSGGNWGGRGGGRGGGGRGGGGGYQQPQQ 389 (465)
T ss_pred ccCCCCCCCCCcHHHhcCCCCCCCCcCCCCCCCcCccccccchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCchh
Confidence 34589999999999988888866654333 0 11122333344556689998876
Q ss_pred cccc
Q 000062 124 AVGS 127 (2470)
Q Consensus 124 ~~~~ 127 (2470)
--.+
T Consensus 390 ~~~~ 393 (465)
T KOG3973|consen 390 QQQQ 393 (465)
T ss_pred hhhc
Confidence 5544
No 151
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=30.02 E-value=1.1e+03 Score=31.47 Aligned_cols=9 Identities=0% Similarity=0.165 Sum_probs=3.6
Q ss_pred CCCCCCCCc
Q 000062 734 SSDSSGLHR 742 (2470)
Q Consensus 734 SsDSSS~nR 742 (2470)
+..-..++.
T Consensus 280 ~G~fgtIN~ 288 (447)
T KOG2751|consen 280 DGEFGTINN 288 (447)
T ss_pred ccccccccc
Confidence 333444443
No 152
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.50 E-value=1.6e+03 Score=30.42 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=7.1
Q ss_pred cCCCCccc--cccchh
Q 000062 714 ADVGDWED--GERMVE 727 (2470)
Q Consensus 714 kDl~DwEd--sERmvE 727 (2470)
+..+.|.+ .+|++|
T Consensus 200 K~rG~WGE~qLerILE 215 (475)
T PRK10361 200 KTQGNWGEVVLTRVLE 215 (475)
T ss_pred CcCcchHHHHHHHHHH
Confidence 44566654 344444
No 153
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=29.31 E-value=1.7e+03 Score=32.97 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=10.7
Q ss_pred cccceeEeeecCCccCCC
Q 000062 1656 LQSGVVRVFEQPGIEAPS 1673 (2470)
Q Consensus 1656 lqsg~vrvf~q~Gie~ps 1673 (2470)
+--.|.+.|++.|||.|-
T Consensus 1061 l~~~I~~~F~~~GIeIPf 1078 (1109)
T PRK10929 1061 IHQLILAGFREHGIDMPF 1078 (1109)
T ss_pred HHHHHHHHHHHCCCcCCC
Confidence 333556666667776664
No 154
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=28.94 E-value=5.3e+02 Score=31.81 Aligned_cols=7 Identities=14% Similarity=0.363 Sum_probs=3.4
Q ss_pred cCCcccc
Q 000062 745 DMSSRNQ 751 (2470)
Q Consensus 745 ~mg~Rv~ 751 (2470)
+|+-+.+
T Consensus 221 ~M~~~pp 227 (265)
T PF06409_consen 221 EMGHQPP 227 (265)
T ss_pred hhCCCCc
Confidence 4555543
No 155
>KOG2823 consensus Cellular protein (glioma tumor suppressor candidate region gene 2) [General function prediction only]
Probab=28.40 E-value=2.4e+02 Score=36.96 Aligned_cols=11 Identities=27% Similarity=0.634 Sum_probs=4.4
Q ss_pred CCCCCCCCccc
Q 000062 331 VLPHKPAHNVF 341 (2470)
Q Consensus 331 ~~p~k~~~~~~ 341 (2470)
.|-+++--.||
T Consensus 47 ~ls~~pnEdLF 57 (438)
T KOG2823|consen 47 NLSEAPNEDLF 57 (438)
T ss_pred chhcCCccceE
Confidence 33444444443
No 156
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=28.34 E-value=4.5e+02 Score=36.32 Aligned_cols=7 Identities=29% Similarity=0.615 Sum_probs=2.9
Q ss_pred cceeccc
Q 000062 1132 SNLVLGF 1138 (2470)
Q Consensus 1132 ~~~vlgf 1138 (2470)
|.||-=|
T Consensus 596 DdV~~eF 602 (735)
T PF04615_consen 596 DDVVAEF 602 (735)
T ss_pred CchHHHH
Confidence 4444333
No 157
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=28.18 E-value=1.9e+03 Score=31.00 Aligned_cols=10 Identities=10% Similarity=0.076 Sum_probs=3.8
Q ss_pred hhHHHHhhhh
Q 000062 546 GLVGVVKKKK 555 (2470)
Q Consensus 546 ~m~alVKKKK 555 (2470)
++...++.=+
T Consensus 475 dL~~ELqqLR 484 (739)
T PF07111_consen 475 DLSLELQQLR 484 (739)
T ss_pred hHHHHHHHHH
Confidence 3434333333
No 158
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=27.82 E-value=2.5e+02 Score=37.91 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=9.4
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCC
Q 000062 486 SSASKSSFSSGGRGFPHNDPMHNFS 510 (2470)
Q Consensus 486 ss~SKss~s~G~kGlL~NdpllNFG 510 (2470)
++++++-.+.=..++....+.-|++
T Consensus 321 s~~~ps~~~~~~~s~~l~pt~~n~~ 345 (563)
T KOG2341|consen 321 SGVDPSVTTQEEESSVLQPTVANAG 345 (563)
T ss_pred cccCCCcchhhhccccccccccccc
Confidence 3344333333333333333344444
No 159
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=27.37 E-value=43 Score=42.16 Aligned_cols=20 Identities=45% Similarity=0.790 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCCCCCCce
Q 000062 36 HSGYYGSNRARPTGGGGGGM 55 (2470)
Q Consensus 36 ~~g~~~~~~~~~~~~~gggm 55 (2470)
+||+.|..+|.+||||+||+
T Consensus 441 gggr~gggrgrgggggrg~y 460 (465)
T KOG3973|consen 441 GGGRDGGGRGRGGGGGRGGY 460 (465)
T ss_pred CCCCCCCCCCCCCCCCCccc
Confidence 44444444444455555553
No 160
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=27.03 E-value=41 Score=46.32 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=12.9
Q ss_pred cCCCCCcccccchhhhhccccccccC
Q 000062 1101 EDVPEGDDENIELTQEFEGIHLEEKG 1126 (2470)
Q Consensus 1101 edei~~~deni~l~~e~~~~hl~~k~ 1126 (2470)
+|-..+.++-+++.++.-+.-++|.+
T Consensus 1426 dd~D~dd~~e~~~~D~~d~~~s~eDn 1451 (1516)
T KOG1832|consen 1426 DDLDRDDGLEGDNSDSGDDDLSSEDN 1451 (1516)
T ss_pred cccccccchhcccccccccccccccc
Confidence 33333335566666665554444433
No 161
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=26.92 E-value=6.8e+02 Score=29.09 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=11.4
Q ss_pred ccccCCCCCCCCCCcchhhHHHH
Q 000062 529 MKDFGSSSFDGRDPFSAGLVGVV 551 (2470)
Q Consensus 529 ~kDfgasgfdG~Dp~t~~m~alV 551 (2470)
++.||.....|=.|....++..+
T Consensus 16 Id~~G~e~v~~LmP~VV~vLE~L 38 (158)
T PF09744_consen 16 IDRYGEEAVKGLMPKVVRVLELL 38 (158)
T ss_pred HHHhChhHHHHHHHHHHHHHHHH
Confidence 34555545445555544444443
No 162
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=26.11 E-value=82 Score=38.35 Aligned_cols=7 Identities=43% Similarity=0.501 Sum_probs=4.5
Q ss_pred CCCCCCc
Q 000062 537 FDGRDPF 543 (2470)
Q Consensus 537 fdG~Dp~ 543 (2470)
|+.-|..
T Consensus 56 FDveDAK 62 (243)
T PF05279_consen 56 FDVEDAK 62 (243)
T ss_pred ccccccc
Confidence 6666665
No 163
>PRK11281 hypothetical protein; Provisional
Probab=26.04 E-value=2.2e+03 Score=31.86 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=13.0
Q ss_pred cccceeEeeecCCccCCCCC
Q 000062 1656 LQSGVVRVFEQPGIEAPSDE 1675 (2470)
Q Consensus 1656 lqsg~vrvf~q~Gie~psd~ 1675 (2470)
|--.|-+.|++.|||.|---
T Consensus 1064 L~~~I~~~f~e~GIeIpfPq 1083 (1113)
T PRK11281 1064 LNRRIDRLFRENDINIAFNQ 1083 (1113)
T ss_pred HHHHHHHHHHHCCCcCCCCC
Confidence 44556677788888876443
No 164
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=25.91 E-value=2.1e+03 Score=31.87 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCCccccccCcCCcc-ccccccccccccCCCCCcccCCCcCC
Q 000062 327 PRPSVLPHKPAHNVFERWGQRDSE-TGKVSSSEVARVDPFGRDIRAPSREG 376 (2470)
Q Consensus 327 p~~~~~p~k~~~~~~~~~g~r~~e-~~k~~~~e~~~~~~~~~d~~~~~reg 376 (2470)
+-.||+| +.=+.+||.--+-..| .=||+-=|+|--+ ..|+-+++=.+
T Consensus 159 ~~aGIIP-Ral~~IFd~Le~~~~EYsvKVSfLELYNEE--l~DLLa~~~~~ 206 (1041)
T KOG0243|consen 159 SEAGIIP-RALRQIFDTLEAQGAEYSVKVSFLELYNEE--LTDLLASEDTS 206 (1041)
T ss_pred ccCCcch-HHHHHHHHHHHhcCCeEEEEEEehhhhhHH--HHHhcCCcccc
Confidence 4567887 4455667754432222 2344444443333 23665554443
No 165
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.84 E-value=2.4e+03 Score=31.54 Aligned_cols=151 Identities=9% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000062 548 VGVVKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETRE 627 (2470)
Q Consensus 548 ~alVKKKKEaeKqaE~EEKqREEeEaELERrqEeEEEERqReEEEQEREeEEeRKEEEERERkaREEEERRRReEEEERE 627 (2470)
+..++..++.+...+..-...+.....+....+..+.+.+...++.++.........+-..+....+..++...+...+-
T Consensus 209 ~~~~~~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL 288 (1311)
T TIGR00606 209 LKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSEL 288 (1311)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Q 000062 628 AV---------WRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIAD 698 (2470)
Q Consensus 628 KE---------EREEKERlEAERREEEERKReEEEErRrEEEEERRREEEEQRRrEEEERerKrEEEeEKrRreAEeKak 698 (2470)
+. .++-+..+..-....++...+.++..+.....+.+.+..+++..+...++-+.+.+.+.-.+....+..
T Consensus 289 ~~~i~~~l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~ 368 (1311)
T TIGR00606 289 ELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDS 368 (1311)
T ss_pred HHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 166
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=25.43 E-value=1.9e+02 Score=40.14 Aligned_cols=38 Identities=42% Similarity=0.725 Sum_probs=20.0
Q ss_pred CCCCCCCCCccCCC-CCCCCCCCCC-cEEEcccCccCcccc
Q 000062 2135 GPPAGYTGPFISPT-GGIPGVQGPP-HMVVYNHFAPVGQFG 2173 (2470)
Q Consensus 2135 ~pp~gf~gpfi~p~-g~ipgvqgpp-hm~vynhfapvgqfg 2173 (2470)
.||-||.||---|| ||.+|-+-|| -|-.+ +-|||=-||
T Consensus 574 ppppg~~gppPPPpp~g~~Gg~ppPP~~gm~-pmaPvlP~g 613 (1102)
T KOG1924|consen 574 PPPPGGGGPPPPPPPGGFLGGPPPPPPPGMF-PMAPVLPFG 613 (1102)
T ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCCCCCcc-cccccCCCC
Confidence 46668888765543 6666554433 22221 246665555
No 167
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=25.18 E-value=2.2e+03 Score=31.30 Aligned_cols=7 Identities=29% Similarity=0.601 Sum_probs=4.0
Q ss_pred ccccccc
Q 000062 349 SETGKVS 355 (2470)
Q Consensus 349 ~e~~k~~ 355 (2470)
|-+||.+
T Consensus 39 tGaGKSt 45 (1047)
T PRK10246 39 TGAGKTT 45 (1047)
T ss_pred CCCCHHH
Confidence 5556654
No 168
>KOG2370 consensus Cactin [Signal transduction mechanisms]
Probab=23.81 E-value=4.6e+02 Score=34.97 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=6.0
Q ss_pred Cchhhhccccc
Q 000062 984 STENEEQNLER 994 (2470)
Q Consensus 984 ~a~~E~q~~d~ 994 (2470)
+.+.+.|+++|
T Consensus 445 ~~~~~tqr~~R 455 (623)
T KOG2370|consen 445 DSIANTQRLER 455 (623)
T ss_pred HHHHHHHHHHH
Confidence 34455666655
No 169
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=23.73 E-value=3.9e+02 Score=34.03 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=3.9
Q ss_pred ccCCCCCCC
Q 000062 518 KREEPYQDD 526 (2470)
Q Consensus 518 KsMKp~~ED 526 (2470)
.++.|..+|
T Consensus 185 ~SYNP~~ed 193 (387)
T PF07767_consen 185 QSYNPSFED 193 (387)
T ss_pred CCCCcCHHH
Confidence 344444444
No 170
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.69 E-value=2e+03 Score=29.78 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=11.1
Q ss_pred ccccccccccccccCCCCCc
Q 000062 349 SETGKVSSSEVARVDPFGRD 368 (2470)
Q Consensus 349 ~e~~k~~~~e~~~~~~~~~d 368 (2470)
|.+||.+--.-...==||+.
T Consensus 37 Ng~GKttll~ai~~~LyG~~ 56 (650)
T TIGR03185 37 NGAGKTTLLDAIQLALYGKR 56 (650)
T ss_pred CCCCHHHHHHHHHHHhcCcc
Confidence 77888764444333345544
No 171
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.65 E-value=1.9e+03 Score=32.24 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=10.6
Q ss_pred ccccCcCCccCCcccc
Q 000062 1062 MIAPASSISAGDDEEW 1077 (2470)
Q Consensus 1062 ~~~~~s~vs~~~d~ew 1077 (2470)
+|+|.++=+.||+.+.
T Consensus 639 lmsGG~s~~~wdek~~ 654 (1141)
T KOG0018|consen 639 LMSGGSSGAKWDEKEV 654 (1141)
T ss_pred eecCCccCCCcCHHHH
Confidence 6776665577886664
No 172
>KOG2117 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.25 E-value=6.5e+02 Score=32.76 Aligned_cols=95 Identities=19% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000062 577 RVQKMQEQERQRIIEE--------------QERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRK 642 (2470)
Q Consensus 577 RrqEeEEEERqReEEE--------------QEREeEEeRKEEEERERkaREEEERRRReEEEEREKEEREEKERlEAERR 642 (2470)
..++..+++.+++++| +..++|...+...+..+.+-.-.+...+..+.++.+++...+.++.++|.
T Consensus 49 ~~~k~ae~qhqKAlaEDptif~YDe~YDdmq~kk~e~~~~~~~~~~r~kPkYi~nLie~aerRkkE~e~r~ERkl~KeRE 128 (379)
T KOG2117|consen 49 KSQKTAERQHQKALAEDPTIFGYDEVYDDMQSKKREQLPRLRLREKRRKPKYIENLIEAAERRKKEQELRYERKLLKERE 128 (379)
T ss_pred HHHHHHHHHHHHhhhcCCchhccchhhHHHHHHHhhhhHhhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000062 643 AEEQ-----------RIAREEERQRIIMEEERRKHAAKQK 671 (2470)
Q Consensus 643 EEEE-----------RKReEEEErRrEEEEERRREEEEQR 671 (2470)
.|.. .-++..|+.++..|+|+++++-+..
T Consensus 129 kEg~~fdDkekfVTgAYKKklEE~~k~~e~Ek~~e~~e~~ 168 (379)
T KOG2117|consen 129 KEGDEFDDKEKFVTGAYKKKLEEVKKWLEQEKEEEALEAT 168 (379)
T ss_pred hhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
No 173
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.42 E-value=2.8e+03 Score=30.96 Aligned_cols=6 Identities=33% Similarity=0.462 Sum_probs=4.0
Q ss_pred ccchhh
Q 000062 1110 NIELTQ 1115 (2470)
Q Consensus 1110 ni~l~~ 1115 (2470)
.|||++
T Consensus 770 ~ldl~~ 775 (1109)
T PRK10929 770 VIDLDA 775 (1109)
T ss_pred ccCHHH
Confidence 577765
No 174
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=22.06 E-value=3.1e+02 Score=34.78 Aligned_cols=13 Identities=23% Similarity=0.214 Sum_probs=7.1
Q ss_pred CCCCCeeeccCCC
Q 000062 279 PGPLPLVRLKPRS 291 (2470)
Q Consensus 279 ~gplplvrl~~~s 291 (2470)
-|+-|+-||++-+
T Consensus 25 ~g~~~~~h~~y~n 37 (410)
T KOG4715|consen 25 GGYNPYTHLAYSN 37 (410)
T ss_pred CCCCcchhhhccC
Confidence 4555566666543
No 175
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=21.62 E-value=1.1e+03 Score=30.26 Aligned_cols=6 Identities=33% Similarity=0.645 Sum_probs=2.4
Q ss_pred cccccC
Q 000062 482 AFQRSS 487 (2470)
Q Consensus 482 A~Q~ss 487 (2470)
+|||+.
T Consensus 131 ayh~sp 136 (410)
T KOG4715|consen 131 AYHNSP 136 (410)
T ss_pred HhhCCc
Confidence 344433
No 176
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=21.53 E-value=2.1e+03 Score=29.24 Aligned_cols=6 Identities=0% Similarity=0.257 Sum_probs=2.7
Q ss_pred chhhcc
Q 000062 832 HMDEFT 837 (2470)
Q Consensus 832 ~LedYr 837 (2470)
.|..|.
T Consensus 260 pL~aY~ 265 (475)
T PRK10361 260 TLVAYE 265 (475)
T ss_pred CHHHHH
Confidence 344444
No 177
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=21.45 E-value=2.7e+02 Score=38.46 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=18.4
Q ss_pred CcccccCCCCccCCCCCCccC--CCccccccccc
Q 000062 151 GVGVYVPPSVRSGTVGPALSS--FAPAEKASVLR 182 (2470)
Q Consensus 151 ~~~~~~~~s~~~~~~~~~~~~--~~~~ek~~vlr 182 (2470)
..-|..|.|+.|-+|...... -.....++||.
T Consensus 73 s~~vhApvSG~V~~I~~~~~~h~sg~~~~~ivIe 106 (695)
T PRK05035 73 SLPVHAPTSGTVVAIEPHPTAHPSGLAELCVVIE 106 (695)
T ss_pred eeEEeCCCCeEEeeeccccccCCCCcccceEEEc
Confidence 345667777777777643221 23445567776
No 178
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.27 E-value=5.4e+02 Score=31.25 Aligned_cols=65 Identities=11% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000062 623 EETREAVWRAEQEQLEATRKAEEQRIARE-EERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAA 687 (2470)
Q Consensus 623 EEEREKEEREEKERlEAERREEEERKReE-EEErRrEEEEERRREEEEQRRrEEEERerKrEEEeE 687 (2470)
+.+.-++|++++.++-.++-+.++++++| +++.+++.++==++..+...+.....+.++.....+
T Consensus 104 epE~IRkWkeeQ~~rl~ekD~~sek~k~ElrekAkKelddwy~~~~ek~~k~~~~nk~eee~~~~e 169 (216)
T KOG4031|consen 104 EPEKIRKWKEEQMKRLQEKDEASEKLKEELREKAKKELDDWYDQQNEKLEKTKANNKAEEEALVKE 169 (216)
T ss_pred ChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
No 179
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=20.91 E-value=2.4e+03 Score=29.72 Aligned_cols=19 Identities=42% Similarity=0.260 Sum_probs=10.3
Q ss_pred cccccCccCCCcccccccC
Q 000062 993 ERSTTSRCDSQSSLSVSSA 1011 (2470)
Q Consensus 993 d~~~t~~~dsQsSLSvssp 1011 (2470)
+|+.|+..-||+-||.-||
T Consensus 467 ~r~~tss~tsq~~~sp~s~ 485 (861)
T KOG1899|consen 467 GRNLTSSATSQFNLSPFSR 485 (861)
T ss_pred cccccccccCCCCCCCCCc
Confidence 3445665666665554444
No 180
>PF07415 Herpes_LMP2: Gammaherpesvirus latent membrane protein (LMP2) protein; InterPro: IPR010881 This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) is a human gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear [].; GO: 0019042 latent virus infection, 0033644 host cell membrane; PDB: 2JO9_B 1UXW_C.
Probab=20.91 E-value=33 Score=43.07 Aligned_cols=41 Identities=34% Similarity=0.563 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC
Q 000062 93 SGSNGGPAGGGVSGAGQRPGSSGTGWTKPGTAVGSDQKIND 133 (2470)
Q Consensus 93 ~g~~~g~~~~~~~g~g~rp~ssg~gwtkp~~~~~~~~~~~~ 133 (2470)
-+++|||-|+-++++-.-|+++|.-|..|+.+..++.+.++
T Consensus 14 p~~~~~~dg~e~~~~~~~ps~~~~~~~~~~~p~~~d~~~~~ 54 (489)
T PF07415_consen 14 PSPHGGPDGYEGSNNSQYPSSFGSSWNSPGPPNYEDYPSNS 54 (489)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccCCCCC
Confidence 35678899999999999999999999999998888877764
No 181
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.75 E-value=2.7e+02 Score=35.80 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=5.6
Q ss_pred ccCCCccccccc
Q 000062 407 ERPSSLNREANK 418 (2470)
Q Consensus 407 ~RPsSRnRGaSk 418 (2470)
|+|.+.+|...+
T Consensus 199 vvpVGisR~vkk 210 (405)
T KOG2963|consen 199 VVPVGISRNVKK 210 (405)
T ss_pred EEecccchHHHH
Confidence 455554444433
No 182
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.58 E-value=2e+03 Score=28.61 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=4.8
Q ss_pred Cccccccc
Q 000062 348 DSETGKVS 355 (2470)
Q Consensus 348 ~~e~~k~~ 355 (2470)
.|-+||.+
T Consensus 35 ~NG~GKSt 42 (562)
T PHA02562 35 KNGAGKST 42 (562)
T ss_pred CCCCCHHH
Confidence 46667654
No 183
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=20.37 E-value=2.9e+03 Score=30.48 Aligned_cols=143 Identities=18% Similarity=0.120 Sum_probs=0.0
Q ss_pred hhhHHHHhh--hhhhhcccccCCchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000062 545 AGLVGVVKK--KKDVLKQTDFHDPVRESFE--AELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRR 620 (2470)
Q Consensus 545 ~~m~alVKK--KKEaeKqaE~EEKqREEeE--aELERrqEeEEEERqReEEEQEREeEEeRKEEEERERkaREEEERRRR 620 (2470)
+.-...+++ |+-..+-...+++.-+... ++++...+....|+++.+++.+-.+.-..+...+.....+.-.-..+.
T Consensus 400 ~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~ 479 (1195)
T KOG4643|consen 400 ISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQL 479 (1195)
T ss_pred HHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000062 621 LEEETREAVW-RAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAA 687 (2470)
Q Consensus 621 eEEEEREKEE-REEKERlEAERREEEERKReEEEErRrEEEEERRREEEEQRRrEEEERerKrEEEeE 687 (2470)
.++-++.... +...+.+.....+.........+.++.-.+....-+...++.++.++..--.++|.+
T Consensus 480 ~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa 547 (1195)
T KOG4643|consen 480 EAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENA 547 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
No 184
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.29 E-value=2.4e+02 Score=38.83 Aligned_cols=135 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000062 614 QEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNS 693 (2470)
Q Consensus 614 EEERRRReEEEEREKEEREEKERlEAERREEEERKReEEEErRrEEEEERRREEEEQRRrEEEERerKrEEEeEKrRreA 693 (2470)
+|+++...-+++.+-+++.+++.+++.+.--|.++..++..+|++.+.+....-++.-+++--.+.++.+.|.-+.+.+.
T Consensus 38 ~e~~~~~d~~eR~e~e~~l~~kdk~rtr~~~e~k~~~ee~~~r~~~~~ed~~~lR~~Sr~eyl~~r~~~k~e~L~~~i~D 117 (902)
T KOG0923|consen 38 EEEERQNDLKERDELEERLEKKDKDRTRNVVERKKSYEEAAKRKALEPEDRTKLRKKSRREYLKKREQKKLEELEAEIED 117 (902)
T ss_pred hHHHHhhhHHHHHHHHHHHHHhhHHhhhhcccchhhHHHHHHhhccCcchhhHHhhhhhhhhhhhHHHHHHHHHHhhhcc
Q ss_pred h-------hhhhhccchhhhhccCcc--ccCCCCccccccchhhcccccCCCCCCCCccccCCc
Q 000062 694 S-------DIADEKSSGLAKERDLPK--MADVGDWEDGERMVERITTSASSDSSGLHRSFDMSS 748 (2470)
Q Consensus 694 E-------eKakEKaeqkrkEKEa~k--EkDl~DwEdsERmvERItTSsSsDSSS~nRs~~mg~ 748 (2470)
+ +..+.+....+..+++.. +++..+..+.+++..+.......|....+++.++..
T Consensus 118 ~~~lf~~eklt~~e~~ele~kkell~~~~~~~~~~~~~~e~~~~y~~~~~~d~~~~~ry~d~~~ 181 (902)
T KOG0923|consen 118 EEYLFGDEKLTKREIRELEYKKELLDRGTKETESASEVEEYRSRYDQPGELDKVEPQRYVDLDE 181 (902)
T ss_pred hhhhcccchhhhhhHhhhhhHHhhhhhhhhhhhcccchHHHHhhhcccccchhhhhHHHhcccc
No 185
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=20.13 E-value=1.7e+03 Score=27.69 Aligned_cols=7 Identities=43% Similarity=0.918 Sum_probs=3.9
Q ss_pred ccCCccc
Q 000062 478 FRGDAFQ 484 (2470)
Q Consensus 478 YrG~A~Q 484 (2470)
|||||-=
T Consensus 35 yRGGALL 41 (322)
T KOG2962|consen 35 YRGGALL 41 (322)
T ss_pred Eecceee
Confidence 5666643
No 186
>PRK13203 ureB urease subunit beta; Reviewed
Probab=20.12 E-value=39 Score=36.49 Aligned_cols=14 Identities=43% Similarity=0.892 Sum_probs=12.5
Q ss_pred CCCCCccccCccCC
Q 000062 2076 PSHFPLYEMNPLLG 2089 (2470)
Q Consensus 2076 ~~~f~~~emn~mlg 2089 (2470)
=|||.|||.|+.|=
T Consensus 37 GSH~HF~E~N~aL~ 50 (102)
T PRK13203 37 GSHYHFFEVNPALS 50 (102)
T ss_pred ccccchhhcCcchh
Confidence 48999999999986
No 187
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.07 E-value=1e+03 Score=34.66 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=9.2
Q ss_pred CCCCCCCCCceEEeecc
Q 000062 45 ARPTGGGGGGMLVLSRP 61 (2470)
Q Consensus 45 ~~~~~~~gggm~vlsr~ 61 (2470)
+||-+|.|-.+.|.++.
T Consensus 93 AYGQTGSGKSYTMMG~~ 109 (1221)
T KOG0245|consen 93 AYGQTGSGKSYTMMGFQ 109 (1221)
T ss_pred EeccCCCCcceeeeccC
Confidence 34445555556666555
Done!