Query 000062
Match_columns 2470
No_of_seqs 295 out of 1413
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 11:49:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 94.7 0.28 9.4E-06 71.9 16.7 159 548-706 1905-2071(3245)
2 3vkg_A Dynein heavy chain, cyt 94.5 0.26 8.9E-06 72.2 15.7 163 547-709 1922-2087(3245)
3 2zuo_A MVP, major vault protei 92.2 4.7 0.00016 53.0 19.9 16 340-355 382-399 (861)
4 2zuo_A MVP, major vault protei 90.9 8.9 0.0003 50.6 20.5 9 150-158 146-154 (861)
5 2dfs_A Myosin-5A; myosin-V, in 90.2 2 7E-05 57.9 14.6 20 154-173 241-260 (1080)
6 1i84_S Smooth muscle myosin he 88.7 0.57 2E-05 63.3 7.9 20 154-173 268-287 (1184)
7 1i84_S Smooth muscle myosin he 87.3 0.7 2.4E-05 62.5 7.4 21 173-193 381-401 (1184)
8 2dfs_A Myosin-5A; myosin-V, in 86.9 16 0.00054 49.7 19.6 20 174-193 356-375 (1080)
9 1f5n_A Interferon-induced guan 86.4 7.9 0.00027 49.4 15.6 7 56-62 42-48 (592)
10 1f5n_A Interferon-induced guan 86.4 18 0.00061 46.3 18.7 6 324-329 236-241 (592)
11 4f61_I Stathmin-like domain R4 86.1 27 0.00091 40.6 17.9 9 549-557 45-53 (240)
12 2b5u_A Colicin E3; high resolu 74.2 1.1E+02 0.0036 39.0 18.6 20 528-549 270-289 (551)
13 2b5u_A Colicin E3; high resolu 57.7 3.9E+02 0.014 34.1 19.8 11 549-559 294-304 (551)
14 3iyk_A VP5; icosahedral virus; 52.8 3.9E+02 0.013 34.1 18.0 12 538-549 83-94 (526)
15 2pk2_A Cyclin-T1, protein TAT; 45.7 4.3 0.00015 48.5 0.0 14 42-55 291-304 (358)
16 3iox_A AGI/II, PA; alpha helix 25.7 1.2E+03 0.04 30.0 17.0 7 1063-1069 333-339 (497)
17 2vgp_C Inner centromere protei 22.9 5.1 0.00017 35.9 -3.4 33 767-808 1-35 (43)
18 2pk2_A Cyclin-T1, protein TAT; 21.5 20 0.00067 43.0 0.0 11 45-55 297-307 (358)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.70 E-value=0.28 Score=71.90 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhcccccC-----CchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000062 548 VGVVKKKKDVLKQTDFH-----DPVRESFE--AELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRR 620 (2470)
Q Consensus 548 ~alVKKKKEaeKqaE~E-----EKqREEeE--aELERrqEeEEEERqReEEEQEREeEEeRKEEEERERkaREEEERRRR 620 (2470)
..++.+|+++......+ +|+++..+ .+++...+.++.+.+++.++.++..++..++.++.++++++.++.+++
T Consensus 1905 ~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~ 1984 (3245)
T 3vkg_A 1905 VLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQ 1984 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Q 000062 621 LEEETREAVWRAEQEQLEATRKAEEQ-RIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADE 699 (2470)
Q Consensus 621 eEEEEREKEEREEKERlEAERREEEE-RKReEEEErRrEEEEERRREEEEQRRrEEEERerKrEEEeEKrRreAEeKakE 699 (2470)
.++++++.++++++...+-++.+-.+ ++++-++.++..++.+++.++.+++..+.+++.++.+++-++..+++++.+.+
T Consensus 1985 ~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e 2064 (3245)
T 3vkg_A 1985 LDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTE 2064 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccchhhh
Q 000062 700 KSSGLAK 706 (2470)
Q Consensus 700 Kaeqkrk 706 (2470)
......+
T Consensus 2065 ~~~~~~k 2071 (3245)
T 3vkg_A 2065 SSKVKNK 2071 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.50 E-value=0.26 Score=72.15 Aligned_cols=163 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred hHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000062 547 LVGVVKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETR 626 (2470)
Q Consensus 547 m~alVKKKKEaeKqaE~EEKqREEeEaELERrqEeEEEERqReEEEQEREeEEeRKEEEERERkaREEEERRRReEEEER 626 (2470)
+..-+.|=.++..+.+...+.-.+.+.+++++.++.++..++...+++..+++.+..++++++.++++++.++++++.++
T Consensus 1922 l~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~ 2001 (3245)
T 3vkg_A 1922 LNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYA 2001 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hhhhhccch
Q 000062 627 EAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSS---DIADEKSSG 703 (2470)
Q Consensus 627 EKEEREEKERlEAERREEEERKReEEEErRrEEEEERRREEEEQRRrEEEERerKrEEEeEKrRreAE---eKakEKaeq 703 (2470)
+-++.+-.+-++++-++.+++.++.+++.++.+++-+..+++-++.+++-++..+++++.+.+.+..+ .++......
T Consensus 2002 dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~g 2081 (3245)
T 3vkg_A 2002 DLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDN 2081 (3245)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhhcc
Q 000062 704 LAKERD 709 (2470)
Q Consensus 704 krkEKE 709 (2470)
...|+.
T Consensus 2082 L~~Ek~ 2087 (3245)
T 3vkg_A 2082 LNSERG 2087 (3245)
T ss_dssp HHHHHH
T ss_pred hhhccc
No 3
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=92.21 E-value=4.7 Score=53.02 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=9.6
Q ss_pred cccccCc--CCccccccc
Q 000062 340 VFERWGQ--RDSETGKVS 355 (2470)
Q Consensus 340 ~~~~~g~--r~~e~~k~~ 355 (2470)
|-+..|- ||..+|||.
T Consensus 382 LdenEgIYVrd~kTG~VR 399 (861)
T 2zuo_A 382 LDQNEGIYVQDVKTGKVR 399 (861)
T ss_dssp CCTTCEEEEEETTTCCEE
T ss_pred eCCCceEEEEEcCCccEE
Confidence 3344453 777788765
No 4
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=90.92 E-value=8.9 Score=50.57 Aligned_cols=9 Identities=44% Similarity=1.198 Sum_probs=4.4
Q ss_pred CCcccccCC
Q 000062 150 DGVGVYVPP 158 (2470)
Q Consensus 150 ~~~~~~~~~ 158 (2470)
.++|.|.|.
T Consensus 146 ~gPGtY~P~ 154 (861)
T 2zuo_A 146 EGPGTYIPQ 154 (861)
T ss_dssp CSSCCCCSS
T ss_pred ECCceecCC
Confidence 444555554
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.15 E-value=2 Score=57.94 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=10.8
Q ss_pred cccCCCCccCCCCCCccCCC
Q 000062 154 VYVPPSVRSGTVGPALSSFA 173 (2470)
Q Consensus 154 ~~~~~s~~~~~~~~~~~~~~ 173 (2470)
.|+=.-.||-...+.++.||
T Consensus 241 ~yLLEKsRVv~q~~~ERnfH 260 (1080)
T 2dfs_A 241 TYLLEKSRVVFQAEEERNYH 260 (1080)
T ss_dssp EECCCCGGGTCCCTTCCSBH
T ss_pred eEeecCceeeccCCCCCcch
Confidence 35555555555555566555
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=88.67 E-value=0.57 Score=63.35 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=11.4
Q ss_pred cccCCCCccCCCCCCccCCC
Q 000062 154 VYVPPSVRSGTVGPALSSFA 173 (2470)
Q Consensus 154 ~~~~~s~~~~~~~~~~~~~~ 173 (2470)
.|+=--.||-...+.++.||
T Consensus 268 ~ylLEksRv~~q~~~Ernfh 287 (1184)
T 1i84_S 268 TYLLEKSRAIRQAKDERTFH 287 (1184)
T ss_dssp ECCCCCGGGSCCCTTCCCCT
T ss_pred EeecCCceeeeecCCCCchh
Confidence 35555555555555666665
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=87.27 E-value=0.7 Score=62.54 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=14.8
Q ss_pred CccccccccccCCCccccccc
Q 000062 173 APAEKASVLRGEDFPSLQAAL 193 (2470)
Q Consensus 173 ~~~ek~~vlrgedfpsl~a~l 193 (2470)
..+++|+-|=|=|.-.|..+|
T Consensus 381 ~~~~~~a~lLg~~~~~l~~~l 401 (1184)
T 1i84_S 381 TAAQKVCHLMGINVTDFTRSI 401 (1184)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHh
Confidence 456777777777776676666
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.87 E-value=16 Score=49.65 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=12.9
Q ss_pred ccccccccccCCCccccccc
Q 000062 174 PAEKASVLRGEDFPSLQAAL 193 (2470)
Q Consensus 174 ~~ek~~vlrgedfpsl~a~l 193 (2470)
.+++|+-|=|=|--.|..+|
T Consensus 356 ~l~~~a~LLgv~~~~L~~~l 375 (1080)
T 2dfs_A 356 PLTIFCDLMGVDYEEMAHWL 375 (1080)
T ss_dssp HHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHh
Confidence 56666666666666666665
No 9
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=86.42 E-value=7.9 Score=49.44 Aligned_cols=7 Identities=14% Similarity=0.168 Sum_probs=3.5
Q ss_pred EEeeccC
Q 000062 56 LVLSRPR 62 (2470)
Q Consensus 56 ~vlsr~r 62 (2470)
+|+++|+
T Consensus 42 aivG~pn 48 (592)
T 1f5n_A 42 AIVGLYR 48 (592)
T ss_dssp EEEEBTT
T ss_pred EEECCCC
Confidence 3555554
No 10
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=86.41 E-value=18 Score=46.31 Aligned_cols=6 Identities=50% Similarity=0.960 Sum_probs=2.9
Q ss_pred CCCCCC
Q 000062 324 FDMPRP 329 (2470)
Q Consensus 324 fd~p~~ 329 (2470)
|-||+|
T Consensus 236 f~lp~P 241 (592)
T 1f5n_A 236 FVFDRP 241 (592)
T ss_dssp EECCCC
T ss_pred EEeCCC
Confidence 445554
No 11
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=86.07 E-value=27 Score=40.59 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=4.1
Q ss_pred HHHhhhhhh
Q 000062 549 GVVKKKKDV 557 (2470)
Q Consensus 549 alVKKKKEa 557 (2470)
..|++|-++
T Consensus 45 eEIqkKLeA 53 (240)
T 4f61_I 45 EEIQKKLEA 53 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 12
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=74.22 E-value=1.1e+02 Score=38.95 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=11.8
Q ss_pred cccccCCCCCCCCCCcchhhHH
Q 000062 528 FMKDFGSSSFDGRDPFSAGLVG 549 (2470)
Q Consensus 528 F~kDfgasgfdG~Dp~t~~m~a 549 (2470)
|+-+|+. ..|.+|++..|..
T Consensus 270 AII~FPe--~Sg~ePlYISvs~ 289 (551)
T 2b5u_A 270 AVIRFPK--DSGHNAVYVSVSD 289 (551)
T ss_dssp EEEECCG--GGCCCCEEEEEEE
T ss_pred eEEECCC--CCCCCceEEEEee
Confidence 3444554 2488899766644
No 13
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=57.73 E-value=3.9e+02 Score=34.11 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=5.4
Q ss_pred HHHhhhhhhhc
Q 000062 549 GVVKKKKDVLK 559 (2470)
Q Consensus 549 alVKKKKEaeK 559 (2470)
..++++.|+++
T Consensus 294 ~elkqrqeee~ 304 (551)
T 2b5u_A 294 DQVKQRQDEEN 304 (551)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555555444
No 14
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=52.77 E-value=3.9e+02 Score=34.15 Aligned_cols=12 Identities=42% Similarity=0.625 Sum_probs=7.2
Q ss_pred CCCCCcchhhHH
Q 000062 538 DGRDPFSAGLVG 549 (2470)
Q Consensus 538 dG~Dp~t~~m~a 549 (2470)
.-.||..+.-..
T Consensus 83 ~~pDPLsPgE~~ 94 (526)
T 3iyk_A 83 EIPDPLSPGERG 94 (526)
T ss_pred CCCCCCCHhHHH
Confidence 367787555544
No 15
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=45.73 E-value=4.3 Score=48.54 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCce
Q 000062 42 SNRARPTGGGGGGM 55 (2470)
Q Consensus 42 ~~~~~~~~~~gggm 55 (2470)
+++|++||||+|||
T Consensus 291 ~~~~~~~~~~~~~~ 304 (358)
T 2pk2_A 291 GSGGGSGGGTSGGV 304 (358)
T ss_dssp --------------
T ss_pred CCCCCCCCCCCCCC
Confidence 34444444444444
No 16
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=25.72 E-value=1.2e+03 Score=29.99 Aligned_cols=7 Identities=29% Similarity=0.026 Sum_probs=3.1
Q ss_pred cccCcCC
Q 000062 1063 IAPASSI 1069 (2470)
Q Consensus 1063 ~~~~s~v 1069 (2470)
|+||||.
T Consensus 333 InGSSV~ 339 (497)
T 3iox_A 333 ISGSSIG 339 (497)
T ss_dssp BTTCSEE
T ss_pred ecCCeEE
Confidence 4444433
No 17
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=22.87 E-value=5.1 Score=35.88 Aligned_cols=33 Identities=12% Similarity=0.320 Sum_probs=28.8
Q ss_pred CCcccccccCCCC--ccccccccccCCCCCCCCCCCCCCCCCCC
Q 000062 767 FNSWRRDAFESGN--SSTFITQDAENGHYSPRRDSAFGGRAVPR 808 (2470)
Q Consensus 767 i~SWrR~~flrd~--sS~F~Pqd~eN~~~sPrrDs~fg~rsppr 808 (2470)
|++||+...+++. .++|.| |+.|..||...+++
T Consensus 1 IP~WA~~~~L~~~l~~Q~~~p---------~D~d~iFG~I~pp~ 35 (43)
T 2vgp_C 1 IPAWASGNLLTQAIRQQYYKP---------IDVDRMYGTIDSPK 35 (43)
T ss_dssp CCGGGSHHHHHHHHHHHHHSC---------CCHHHHTTTSCCCC
T ss_pred CCcccchHHHHHHHHHHHccC---------CCHHHHcCCCCCcC
Confidence 5789999999986 888877 89999999998876
No 18
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=21.54 E-value=20 Score=43.05 Aligned_cols=11 Identities=36% Similarity=0.447 Sum_probs=0.0
Q ss_pred CCCCCCCCCce
Q 000062 45 ARPTGGGGGGM 55 (2470)
Q Consensus 45 ~~~~~~~gggm 55 (2470)
||+|+||+||-
T Consensus 297 ~~~~~~~~~~~ 307 (358)
T 2pk2_A 297 GGGTSGGVPGQ 307 (358)
T ss_dssp -----------
T ss_pred CCCCCCCCCCc
Confidence 33344444443
Done!