Query 000062
Match_columns 2470
No_of_seqs 295 out of 1413
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 11:50:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000062.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000062hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ejxb_ b.85.3.1 (B:) Urease, 17.9 17 0.0012 35.3 0.9 13 2077-2089 38-50 (101)
2 d1e9ya1 b.85.3.1 (A:106-238) U 15.4 21 0.0015 35.9 0.9 13 2077-2089 38-50 (133)
3 d4ubpb_ b.85.3.1 (B:) Urease, 14.8 22 0.0016 35.4 0.9 13 2077-2089 40-52 (122)
4 d1k47a2 d.58.26.4 (A:195-329) 7.6 73 0.0053 30.6 1.8 14 48-61 98-111 (135)
5 d1v9da_ a.207.1.1 (A:) Diaphan 3.6 5.2E+02 0.038 27.6 5.7 34 608-641 298-331 (332)
6 d1qvra2 c.37.1.20 (A:149-535) 3.5 1.3E+03 0.098 25.1 9.4 110 576-685 253-362 (387)
7 d1qvra2 c.37.1.20 (A:149-535) 3.2 1.8E+03 0.13 24.0 10.0 110 579-688 253-362 (387)
8 d1l2pa_ f.23.21.1 (A:) F1F0 AT 2.7 1.4E+03 0.1 19.5 8.9 60 598-657 2-61 (61)
9 d1oopa_ b.121.4.1 (A:) Swine v 2.7 2.2E+02 0.016 31.1 1.4 22 2163-2184 186-208 (271)
10 d2drwa1 e.3.1.1 (A:2-363) D-Am 2.7 1.3E+02 0.0092 32.3 -0.6 93 1979-2088 21-118 (362)
No 1
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]}
Probab=17.90 E-value=17 Score=35.27 Aligned_cols=13 Identities=46% Similarity=0.777 Sum_probs=11.8
Q ss_pred CCCCccccCccCC
Q 000062 2077 SHFPLYEMNPLLG 2089 (2470)
Q Consensus 2077 ~~f~~~emn~mlg 2089 (2470)
|||.|||.|+.|=
T Consensus 38 SH~HF~E~N~aL~ 50 (101)
T d1ejxb_ 38 SHYHFAEVNPALK 50 (101)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChHHcCcccc
Confidence 8999999999885
No 2
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]}
Probab=15.36 E-value=21 Score=35.95 Aligned_cols=13 Identities=46% Similarity=0.818 Sum_probs=11.9
Q ss_pred CCCCccccCccCC
Q 000062 2077 SHFPLYEMNPLLG 2089 (2470)
Q Consensus 2077 ~~f~~~emn~mlg 2089 (2470)
|||.|||.|+.|=
T Consensus 38 SH~HF~E~N~aL~ 50 (133)
T d1e9ya1 38 SHFHFFEVNRCLD 50 (133)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChhhcCcccc
Confidence 8999999999985
No 3
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}
Probab=14.84 E-value=22 Score=35.37 Aligned_cols=13 Identities=38% Similarity=0.365 Sum_probs=11.9
Q ss_pred CCCCccccCccCC
Q 000062 2077 SHFPLYEMNPLLG 2089 (2470)
Q Consensus 2077 ~~f~~~emn~mlg 2089 (2470)
|||.|||.|+.|-
T Consensus 40 SH~HF~E~N~aL~ 52 (122)
T d4ubpb_ 40 SHIHFVEVNKELL 52 (122)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChhhcCcccc
Confidence 8999999999985
No 4
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=7.60 E-value=73 Score=30.60 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=0.0
Q ss_pred CCCCCCceEEeecc
Q 000062 48 TGGGGGGMLVLSRP 61 (2470)
Q Consensus 48 ~~~~gggm~vlsr~ 61 (2470)
|+||||+|++|.++
T Consensus 98 GaGgGG~~i~l~~~ 111 (135)
T d1k47a2 98 GAGGGDCGIALSFD 111 (135)
T ss_dssp SSCSSSEEEEEECS
T ss_pred cCcCCCeEEEEecC
No 5
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.59 E-value=5.2e+02 Score=27.64 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000062 608 LRVAREQEEQRRRLEEETREAVWRAEQEQLEATR 641 (2470)
Q Consensus 608 ERkaREEEERRRReEEEEREKEEREEKERlEAER 641 (2470)
....+..++.+++++++++.+++++++++.+++|
T Consensus 298 ~~~~~a~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 331 (332)
T d1v9da_ 298 NMFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 6
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=3.50 E-value=1.3e+03 Score=25.06 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000062 576 ERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQ 655 (2470)
Q Consensus 576 ERrqEeEEEERqReEEEQEREeEEeRKEEEERERkaREEEERRRReEEEEREKEEREEKERlEAERREEEERKReEEEEr 655 (2470)
++....+.+..+...+.....++......+.......+..+.+.....-..+-+.+++.-....+-+++-+..+.+.+..
T Consensus 253 ~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 253 EEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000062 656 RIIMEEERRKHAAKQKLLELEERIAKRQAE 685 (2470)
Q Consensus 656 RrEEEEERRREEEEQRRrEEEERerKrEEE 685 (2470)
.+...-++.-+.......+.+.+..+..++
T Consensus 333 ~r~gd~e~AaeL~y~~ip~le~el~~l~~~ 362 (387)
T d1qvra2 333 ERQYDLNRAAELRYGELPKLEAEVEALSEK 362 (387)
T ss_dssp TTTTCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHhhchHHHHHHHHHHHHHH
No 7
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=3.17 E-value=1.8e+03 Score=24.02 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000062 579 QKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRII 658 (2470)
Q Consensus 579 qEeEEEERqReEEEQEREeEEeRKEEEERERkaREEEERRRReEEEEREKEEREEKERlEAERREEEERKReEEEErRrE 658 (2470)
++..+.+++...-+.+++.-......+..++....+.+....+++.....++-..++..-.+.++.+++......+...+
T Consensus 253 ~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 253 EEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000062 659 MEEERRKHAAKQKLLELEERIAKRQAEAAK 688 (2470)
Q Consensus 659 EEEERRREEEEQRRrEEEERerKrEEEeEK 688 (2470)
+....-.++.+.+-.+...-+++.++..++
T Consensus 333 ~r~gd~e~AaeL~y~~ip~le~el~~l~~~ 362 (387)
T d1qvra2 333 ERQYDLNRAAELRYGELPKLEAEVEALSEK 362 (387)
T ss_dssp TTTTCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHhhchHHHHHHHHHHHHHH
No 8
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=2.73 E-value=1.4e+03 Score=19.52 Aligned_cols=60 Identities=12% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000062 598 ELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRI 657 (2470)
Q Consensus 598 EEeRKEEEERERkaREEEERRRReEEEEREKEEREEKERlEAERREEEERKReEEEErRr 657 (2470)
+.....+.+..........+....-++.+.+...+-..-+...+.+-+..+.+..+..|+
T Consensus 2 e~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eLRk 61 (61)
T d1l2pa_ 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELRK 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 9
>d1oopa_ b.121.4.1 (A:) Swine vesicular disease virus coat proteins {Swine vesicular disease virus [TaxId: 12075]}
Probab=2.70 E-value=2.2e+02 Score=31.12 Aligned_cols=22 Identities=36% Similarity=0.739 Sum_probs=0.0
Q ss_pred cccCccCccccccccccccc-cc
Q 000062 2163 YNHFAPVGQFGQVGLSFMGT-YI 2184 (2470)
Q Consensus 2163 ynhfapvgqfgq~gl~~mg~-yi 2184 (2470)
|.||..-|++|+.-+-+||+ +|
T Consensus 186 y~~f~~~~~YG~~p~N~mGtl~v 208 (271)
T d1oopa_ 186 WARFDKQGTYGISTLNNMGTLYM 208 (271)
T ss_dssp BSSTTSCSCBSGGGTCCCCEEEE
T ss_pred CCCCCCCCCCccccccCCeeEEE
No 10
>d2drwa1 e.3.1.1 (A:2-363) D-Amino acid amidase DaaA {Ochrobactrum anthropi [TaxId: 529]}
Probab=2.70 E-value=1.3e+02 Score=32.30 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=0.0
Q ss_pred hhhhhhcccCcccccCCCCcccccCccccccCccCCCccccCCCccccCcccccccccceecccCc---ccccCCCcccC
Q 000062 1979 AIAVAAISSDEVVGNGLGTGSVSASETKNFGGADTDGIRAAGGDADQQSASQSRAEESLSVALPAD---LSVETPPISLW 2055 (2470)
Q Consensus 1979 AvAVAAIs~De~vg~~~~~~~~~~~~~k~fg~~~~~~~~~ag~~~~~~~~~qS~~ee~l~vaLPAD---LSVdtp~is~w 2055 (2470)
.++||++.++++|- .+.||-+|++...++-...--..+|-|+.=-.+.|.+=.| |+.|+|=...|
T Consensus 21 g~~v~v~~~g~~v~------------~~~~G~ad~~~~~p~t~dt~f~i~SvsK~~ta~~i~~lve~G~l~ldd~v~~yl 88 (362)
T d2drwa1 21 GVSLALCLPGEETS------------LYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWF 88 (362)
T ss_dssp EEEEEEECTTSCEE------------EEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGGTC
T ss_pred eEEEEEEECCEEEE------------EEeEEEeccccCCCCCCCCeEEeeehHHHHHHHHHHHHHHcCCCCCCceeeeee
Q ss_pred CCCCCCC--CCccccccCCCCCCCCCCccccCccC
Q 000062 2056 PPLPSPP--SSNQMISHFPGGLPSHFPLYEMNPLL 2088 (2470)
Q Consensus 2056 ~~lpspq--~s~~m~s~~p~~~~~~f~~~emn~ml 2088 (2470)
|.|+... |=-++|+|--| +|.|+....+
T Consensus 89 p~~~~~~~iTi~~LL~htSG-----l~~~~~~~~~ 118 (362)
T d2drwa1 89 PDLPKAAQMPVRILLNHRSG-----LPDFETSMPM 118 (362)
T ss_dssp TTSTTGGGCBGGGGTTTCSC-----CCCCTTTSBS
T ss_pred ccccccccccccccccccCC-----CCcccccccc
Done!