Query 000063
Match_columns 2469
No_of_seqs 306 out of 1399
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 16:08:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00121 MAEBL; Provisional 98.9 1.7E-08 3.6E-13 131.3 15.7 10 82-91 603-612 (2084)
2 PTZ00121 MAEBL; Provisional 98.9 2.7E-08 5.9E-13 129.4 16.4 8 318-325 832-839 (2084)
3 KOG1029 Endocytic adaptor prot 98.7 4.2E-07 9E-12 114.1 17.9 33 624-656 385-417 (1118)
4 PF07001 BAT2_N: BAT2 N-termin 98.6 1.9E-07 4.1E-12 104.3 9.5 73 8-119 16-88 (189)
5 KOG1029 Endocytic adaptor prot 98.5 3.8E-06 8.3E-11 105.8 18.2 14 872-885 726-739 (1118)
6 PRK09510 tolA cell envelope in 98.4 8.2E-06 1.8E-10 99.4 18.9 51 551-601 67-117 (387)
7 PTZ00266 NIMA-related protein 98.4 2.6E-06 5.7E-11 113.0 15.8 15 52-66 25-39 (1021)
8 PTZ00266 NIMA-related protein 98.3 4.9E-06 1.1E-10 110.5 15.4 13 850-863 691-703 (1021)
9 COG3064 TolA Membrane protein 98.3 1.3E-05 2.9E-10 94.1 15.6 47 549-595 65-111 (387)
10 KOG4364 Chromatin assembly fac 98.2 3.6E-05 7.7E-10 96.7 17.4 20 1272-1291 750-769 (811)
11 KOG4364 Chromatin assembly fac 98.0 7.7E-05 1.7E-09 93.9 15.8 6 766-771 401-406 (811)
12 PRK09510 tolA cell envelope in 98.0 0.00042 9.2E-09 85.0 20.2 7 724-730 257-263 (387)
13 KOG0163 Myosin class VI heavy 98.0 0.00022 4.7E-09 90.5 17.8 33 846-878 1210-1242(1259)
14 KOG2891 Surface glycoprotein [ 97.8 0.00091 2E-08 78.1 17.4 22 551-572 275-296 (445)
15 KOG2891 Surface glycoprotein [ 97.7 0.0017 3.7E-08 75.9 18.4 7 435-441 203-209 (445)
16 KOG0163 Myosin class VI heavy 97.6 0.0006 1.3E-08 86.7 14.9 21 606-626 934-954 (1259)
17 KOG2072 Translation initiation 97.6 0.014 3E-07 76.1 26.3 13 762-774 897-909 (988)
18 KOG4661 Hsp27-ERE-TATA-binding 97.6 0.0055 1.2E-07 76.6 21.4 46 786-831 781-829 (940)
19 PF05262 Borrelia_P83: Borreli 97.4 0.0026 5.6E-08 80.2 16.3 11 454-464 93-103 (489)
20 KOG4661 Hsp27-ERE-TATA-binding 97.3 0.0015 3.3E-08 81.3 11.8 70 322-402 355-426 (940)
21 TIGR02794 tolA_full TolA prote 97.3 0.0091 2E-07 72.9 18.1 10 581-590 85-94 (346)
22 KOG1144 Translation initiation 97.2 0.00073 1.6E-08 86.6 8.4 11 1132-1142 730-740 (1064)
23 KOG2412 Nuclear-export-signal 97.2 0.013 2.8E-07 74.0 18.3 23 829-851 424-446 (591)
24 KOG2412 Nuclear-export-signal 97.1 0.013 2.8E-07 73.9 17.6 7 838-844 458-464 (591)
25 PF12037 DUF3523: Domain of un 96.9 0.054 1.2E-06 64.7 19.4 8 536-543 25-32 (276)
26 KOG0742 AAA+-type ATPase [Post 96.8 0.11 2.3E-06 64.8 21.2 8 536-543 69-76 (630)
27 KOG2072 Translation initiation 96.4 0.12 2.6E-06 68.0 19.0 6 724-729 888-893 (988)
28 KOG3054 Uncharacterized conser 96.1 0.033 7.2E-07 65.1 10.8 14 756-769 244-257 (299)
29 KOG0742 AAA+-type ATPase [Post 96.1 0.11 2.4E-06 64.6 15.6 11 722-732 253-263 (630)
30 KOG2002 TPR-containing nuclear 96.1 0.016 3.5E-07 76.8 9.0 7 548-554 756-762 (1018)
31 TIGR03319 YmdA_YtgF conserved 95.5 0.81 1.8E-05 59.0 20.3 6 780-785 249-254 (514)
32 PRK12704 phosphodiesterase; Pr 95.2 1.2 2.5E-05 57.8 20.3 6 780-785 255-260 (520)
33 PF09726 Macoilin: Transmembra 95.1 0.45 9.8E-06 63.2 16.7 9 188-196 196-204 (697)
34 PRK00106 hypothetical protein; 95.0 1.5 3.3E-05 56.9 20.5 6 780-785 270-275 (535)
35 KOG3654 Uncharacterized CH dom 94.6 0.17 3.7E-06 63.7 10.3 20 201-220 115-134 (708)
36 PF12037 DUF3523: Domain of un 94.4 3.4 7.4E-05 50.1 20.2 17 502-518 20-36 (276)
37 KOG3654 Uncharacterized CH dom 93.3 0.42 9.1E-06 60.4 10.3 17 75-91 17-33 (708)
38 PRK12705 hypothetical protein; 92.8 3.7 8.1E-05 53.3 18.0 13 547-559 21-33 (508)
39 COG4942 Membrane-bound metallo 92.3 5.2 0.00011 51.0 17.8 8 787-794 358-365 (420)
40 KOG1103 Predicted coiled-coil 92.3 1.2 2.6E-05 54.6 11.9 114 878-1011 372-491 (561)
41 KOG4817 Unnamed protein [Funct 91.4 3 6.5E-05 51.9 14.0 75 8-120 15-89 (468)
42 TIGR01069 mutS2 MutS2 family p 91.2 4.7 0.0001 54.6 17.0 14 277-290 217-230 (771)
43 PF02029 Caldesmon: Caldesmon; 91.1 0.63 1.4E-05 59.7 8.6 16 875-890 459-474 (492)
44 KOG2507 Ubiquitin regulatory p 90.6 0.57 1.2E-05 58.7 7.2 12 858-869 422-433 (506)
45 PRK00409 recombination and DNA 90.2 6.9 0.00015 53.2 17.3 7 281-287 226-232 (782)
46 KOG4722 Zn-finger protein [Gen 90.2 9.6 0.00021 48.1 16.8 17 189-205 82-98 (672)
47 KOG2253 U1 snRNP complex, subu 89.4 6.6 0.00014 51.9 15.3 7 155-161 26-32 (668)
48 KOG2689 Predicted ubiquitin re 89.3 2.8 6.2E-05 50.6 11.3 15 798-812 249-263 (290)
49 PLN02316 synthase/transferase 89.2 7.7 0.00017 54.1 16.6 9 267-275 120-128 (1036)
50 PF05914 RIB43A: RIB43A; Inte 88.6 36 0.00079 43.2 20.6 7 537-543 142-148 (379)
51 PLN02316 synthase/transferase 87.9 5.6 0.00012 55.4 14.2 12 768-779 509-520 (1036)
52 PTZ00491 major vault protein; 87.7 11 0.00024 51.5 16.1 17 497-513 583-599 (850)
53 KOG0579 Ste20-like serine/thre 87.3 18 0.00038 48.3 16.9 11 477-487 713-723 (1187)
54 KOG2507 Ubiquitin regulatory p 87.3 1 2.3E-05 56.5 6.3 8 805-812 360-367 (506)
55 PF06637 PV-1: PV-1 protein (P 86.9 13 0.00028 46.9 14.9 8 518-525 138-145 (442)
56 PF09731 Mitofilin: Mitochondr 86.6 40 0.00087 44.2 20.1 16 318-333 26-41 (582)
57 KOG1265 Phospholipase C [Lipid 86.1 22 0.00047 48.7 17.1 41 318-365 752-794 (1189)
58 COG4372 Uncharacterized protei 85.8 52 0.0011 42.0 19.1 14 548-561 80-93 (499)
59 KOG3634 Troponin [Cytoskeleton 85.2 7 0.00015 48.4 11.5 21 743-763 289-309 (361)
60 PF10147 CR6_interact: Growth 84.3 57 0.0012 39.0 17.9 13 531-543 65-78 (217)
61 KOG0994 Extracellular matrix g 84.2 30 0.00065 48.4 17.3 64 162-232 1193-1261(1758)
62 KOG0161 Myosin class II heavy 83.7 33 0.00071 50.9 18.6 9 185-193 302-310 (1930)
63 KOG0994 Extracellular matrix g 83.3 43 0.00092 47.1 18.1 6 54-59 647-652 (1758)
64 KOG2129 Uncharacterized conser 82.4 1.5E+02 0.0033 38.4 21.1 62 864-927 471-536 (552)
65 KOG0579 Ste20-like serine/thre 82.1 20 0.00043 47.8 14.1 11 183-193 473-483 (1187)
66 KOG0980 Actin-binding protein 81.9 1.6E+02 0.0034 41.2 22.2 14 838-851 608-621 (980)
67 PF09756 DDRGK: DDRGK domain; 81.7 0.45 9.7E-06 54.6 0.0 12 757-768 144-155 (188)
68 KOG3634 Troponin [Cytoskeleton 81.7 9.9 0.00022 47.1 10.9 6 780-785 304-309 (361)
69 PTZ00491 major vault protein; 81.4 15 0.00032 50.3 13.2 11 150-160 198-208 (850)
70 PRK13428 F0F1 ATP synthase sub 81.1 48 0.001 42.8 17.2 22 827-848 244-265 (445)
71 PF03154 Atrophin-1: Atrophin- 80.8 1.7 3.6E-05 59.1 4.5 14 915-928 896-909 (982)
72 KOG2668 Flotillins [Intracellu 80.3 57 0.0012 41.3 16.5 7 469-475 139-145 (428)
73 KOG0161 Myosin class II heavy 79.9 53 0.0011 49.0 18.5 12 252-263 453-464 (1930)
74 KOG1265 Phospholipase C [Lipid 79.7 61 0.0013 44.8 17.5 19 341-359 740-758 (1189)
75 PRK12472 hypothetical protein; 79.7 33 0.00071 44.8 14.8 10 469-478 122-131 (508)
76 PRK12472 hypothetical protein; 79.5 23 0.00051 46.0 13.5 8 746-753 368-375 (508)
77 PRK04863 mukB cell division pr 79.3 44 0.00094 48.9 17.5 12 1288-1299 830-841 (1486)
78 PF06098 Radial_spoke_3: Radia 77.4 21 0.00045 44.0 11.8 14 336-349 3-16 (291)
79 TIGR02680 conserved hypothetic 77.4 61 0.0013 47.1 18.0 7 349-355 33-39 (1353)
80 KOG1103 Predicted coiled-coil 77.2 53 0.0011 41.2 14.9 13 518-530 51-63 (561)
81 COG2433 Uncharacterized conser 74.8 69 0.0015 42.9 15.9 11 538-548 342-352 (652)
82 PF07227 DUF1423: Protein of u 74.8 45 0.00098 43.2 14.1 7 478-484 261-267 (446)
83 PF04094 DUF390: Protein of un 74.4 1E+02 0.0022 42.1 17.3 20 738-757 684-703 (828)
84 KOG0982 Centrosomal protein Nu 73.8 1.8E+02 0.0038 38.0 18.4 8 549-556 222-229 (502)
85 KOG0288 WD40 repeat protein Ti 73.7 1.4E+02 0.0031 38.7 17.6 15 997-1011 383-397 (459)
86 KOG0933 Structural maintenance 71.8 1.6E+02 0.0035 41.7 18.5 30 530-559 653-684 (1174)
87 KOG4572 Predicted DNA-binding 71.2 53 0.0011 44.7 13.7 15 69-84 229-243 (1424)
88 PRK04863 mukB cell division pr 71.0 1.3E+02 0.0029 44.3 18.8 29 1090-1118 728-756 (1486)
89 TIGR02169 SMC_prok_A chromosom 70.2 1.9E+02 0.0041 40.4 19.5 6 780-785 574-579 (1164)
90 TIGR02169 SMC_prok_A chromosom 69.9 2.6E+02 0.0056 39.1 20.7 7 349-355 32-38 (1164)
91 KOG3756 Pinin (desmosome-assoc 69.8 3.1E+02 0.0068 34.8 19.0 12 377-388 54-65 (340)
92 PF05667 DUF812: Protein of un 68.4 85 0.0018 42.2 15.1 9 187-195 47-55 (594)
93 COG2433 Uncharacterized conser 68.1 48 0.001 44.3 12.4 6 308-313 99-104 (652)
94 KOG0996 Structural maintenance 68.1 84 0.0018 44.7 15.1 10 886-895 689-698 (1293)
95 PF10168 Nup88: Nuclear pore c 66.3 59 0.0013 44.5 13.3 11 81-91 83-93 (717)
96 KOG2893 Zn finger protein [Gen 64.2 1.6E+02 0.0034 35.9 14.5 82 2220-2322 187-271 (341)
97 KOG3859 Septins (P-loop GTPase 64.0 1.1E+02 0.0024 38.2 13.5 7 400-406 145-151 (406)
98 KOG2894 Uncharacterized conser 63.2 1.2E+02 0.0027 37.5 13.6 13 843-855 311-323 (331)
99 PF07227 DUF1423: Protein of u 63.0 89 0.0019 40.7 13.2 6 344-349 160-165 (446)
100 COG1196 Smc Chromosome segrega 60.8 2.7E+02 0.0059 40.1 18.6 20 857-876 599-618 (1163)
101 KOG0612 Rho-associated, coiled 60.7 1.7E+02 0.0036 42.2 15.8 16 468-484 388-403 (1317)
102 KOG0976 Rho/Rac1-interacting s 59.4 3.3E+02 0.0072 38.0 17.4 24 1061-1084 812-837 (1265)
103 PLN03188 kinesin-12 family pro 59.3 3E+02 0.0066 40.1 17.9 20 407-426 671-690 (1320)
104 KOG2441 mRNA splicing factor/p 59.0 41 0.00089 42.9 9.2 33 752-785 411-444 (506)
105 KOG0249 LAR-interacting protei 58.6 2.7E+02 0.0059 38.4 16.5 12 912-923 440-451 (916)
106 KOG3915 Transcription regulato 58.5 46 0.001 43.0 9.6 20 36-55 71-90 (641)
107 KOG2441 mRNA splicing factor/p 57.9 58 0.0013 41.6 10.2 9 447-455 189-197 (506)
108 KOG3598 Thyroid hormone recept 56.9 26 0.00057 49.9 7.6 12 376-387 1924-1935(2220)
109 COG5269 ZUO1 Ribosome-associat 56.2 1.6E+02 0.0034 36.6 12.9 13 270-282 15-27 (379)
110 PLN03188 kinesin-12 family pro 55.5 3.2E+02 0.007 39.9 17.3 12 70-81 65-76 (1320)
111 KOG0288 WD40 repeat protein Ti 54.8 4.8E+02 0.01 34.3 17.2 8 1004-1011 354-361 (459)
112 KOG3598 Thyroid hormone recept 53.6 22 0.00048 50.6 6.2 11 465-475 2032-2042(2220)
113 COG4499 Predicted membrane pro 53.0 33 0.00072 43.7 7.1 23 545-567 344-366 (434)
114 KOG4403 Cell surface glycoprot 52.6 2.2E+02 0.0048 37.2 13.9 10 531-540 202-211 (575)
115 KOG4403 Cell surface glycoprot 52.6 4.4E+02 0.0095 34.7 16.3 6 549-554 233-238 (575)
116 PRK03918 chromosome segregatio 52.6 6E+02 0.013 35.1 19.2 7 349-355 32-38 (880)
117 KOG1425 Microfibrillar-associa 50.6 83 0.0018 40.0 9.8 13 304-316 51-63 (430)
118 PRK07735 NADH dehydrogenase su 50.2 54 0.0012 42.3 8.4 11 551-561 8-18 (430)
119 KOG0996 Structural maintenance 50.0 4.4E+02 0.0096 38.3 17.0 6 904-909 731-736 (1293)
120 COG5281 Phage-related minor ta 48.5 3.4E+02 0.0075 38.2 15.7 12 177-188 41-52 (833)
121 KOG0612 Rho-associated, coiled 47.5 6.8E+02 0.015 36.8 18.2 10 1291-1300 1192-1201(1317)
122 KOG0249 LAR-interacting protei 47.4 2.8E+02 0.006 38.3 14.1 13 1493-1505 823-835 (916)
123 KOG0577 Serine/threonine prote 47.1 6.1E+02 0.013 35.0 16.8 15 261-275 210-224 (948)
124 KOG4673 Transcription factor T 47.0 8E+02 0.017 34.2 17.9 14 1078-1091 893-906 (961)
125 KOG0250 DNA repair protein RAD 46.2 8E+02 0.017 35.7 18.5 33 431-463 553-585 (1074)
126 KOG0577 Serine/threonine prote 44.6 8.4E+02 0.018 33.9 17.5 18 1074-1091 815-832 (948)
127 COG1390 NtpE Archaeal/vacuolar 44.0 3.3E+02 0.0072 32.2 12.9 12 746-757 154-165 (194)
128 KOG0250 DNA repair protein RAD 43.7 7.8E+02 0.017 35.8 17.9 16 404-419 85-100 (1074)
129 PF07111 HCR: Alpha helical co 43.0 8.5E+02 0.018 34.1 17.5 8 768-775 309-316 (739)
130 KOG3878 Protein involved in ma 42.8 63 0.0014 40.5 7.2 11 911-921 405-415 (469)
131 KOG0976 Rho/Rac1-interacting s 42.7 6.9E+02 0.015 35.2 16.5 13 1534-1546 1197-1209(1265)
132 PF15359 CDV3: Carnitine defic 41.6 64 0.0014 36.0 6.4 62 117-193 60-123 (129)
133 KOG2751 Beclin-like protein [S 41.5 4.5E+02 0.0098 34.7 14.3 24 827-850 373-398 (447)
134 KOG2505 Ankyrin repeat protein 40.8 87 0.0019 41.3 8.2 11 533-543 325-335 (591)
135 KOG0345 ATP-dependent RNA heli 39.8 1.2E+02 0.0026 40.0 9.2 8 309-316 170-177 (567)
136 PRK05035 electron transport co 39.5 65 0.0014 43.9 7.3 32 151-182 73-106 (695)
137 COG0419 SbcC ATPase involved i 36.7 1.5E+03 0.032 32.3 19.6 7 349-355 34-40 (908)
138 KOG0247 Kinesin-like protein [ 36.5 5.4E+02 0.012 36.0 14.4 10 751-760 672-681 (809)
139 KOG0345 ATP-dependent RNA heli 35.6 1.5E+02 0.0032 39.3 9.0 14 374-387 350-363 (567)
140 PF00901 Orbi_VP5: Orbivirus o 34.6 1.3E+03 0.029 31.2 18.9 18 539-556 78-95 (508)
141 KOG2341 TATA box binding prote 33.7 1.6E+02 0.0035 39.5 9.2 7 85-91 10-16 (563)
142 KOG3878 Protein involved in ma 33.7 8.3E+02 0.018 31.5 14.4 8 809-816 352-359 (469)
143 KOG3973 Uncharacterized conser 31.3 78 0.0017 40.0 5.6 57 71-127 310-393 (465)
144 KOG0247 Kinesin-like protein [ 29.9 8.7E+02 0.019 34.1 14.7 8 352-359 326-333 (809)
145 PRK10246 exonuclease subunit S 29.6 1.7E+03 0.037 32.4 18.4 14 880-893 500-513 (1047)
146 KOG2823 Cellular protein (glio 28.9 2.2E+02 0.0048 37.1 9.0 11 331-341 47-57 (438)
147 KOG4715 SWI/SNF-related matrix 28.3 3.6E+02 0.0077 34.3 10.2 12 279-290 25-36 (410)
148 PRK10929 putative mechanosensi 28.1 1.5E+03 0.032 33.5 17.3 18 1656-1673 1061-1078(1109)
149 KOG0338 ATP-dependent RNA heli 28.0 2.6E+02 0.0057 37.5 9.4 6 510-515 515-520 (691)
150 PF12004 DUF3498: Domain of un 27.5 20 0.00044 46.8 0.0 8 379-386 236-243 (495)
151 KOG0804 Cytoplasmic Zn-finger 27.3 1.7E+03 0.036 30.1 17.5 10 376-385 235-244 (493)
152 KOG3973 Uncharacterized conser 27.1 43 0.00094 42.1 2.6 20 36-55 441-460 (465)
153 PF09744 Jnk-SapK_ap_N: JNK_SA 27.0 6.7E+02 0.014 29.1 11.5 21 529-549 16-36 (158)
154 PF10252 PP28: Casein kinase s 26.8 1.9E+02 0.0042 30.5 6.6 59 598-656 24-82 (82)
155 KOG1832 HIV-1 Vpr-binding prot 26.8 42 0.0009 46.2 2.5 25 1101-1125 1426-1450(1516)
156 PRK10361 DNA recombination pro 26.6 1.7E+03 0.037 30.0 19.7 9 722-730 206-214 (475)
157 KOG0971 Microtubule-associated 26.1 2.3E+03 0.049 31.2 19.0 33 308-352 46-79 (1243)
158 KOG0923 mRNA splicing factor A 25.8 1.4E+02 0.0031 40.7 6.8 8 1291-1298 614-621 (902)
159 PRK10361 DNA recombination pro 25.6 1.8E+03 0.039 29.9 19.2 6 832-837 260-265 (475)
160 KOG1924 RhoA GTPase effector D 25.6 1.9E+02 0.004 40.2 7.8 89 2039-2172 520-613 (1102)
161 PF13863 DUF4200: Domain of un 25.4 8.5E+02 0.018 26.0 12.7 101 550-650 2-106 (126)
162 COG4499 Predicted membrane pro 24.7 1.2E+02 0.0027 39.0 5.8 10 324-333 27-36 (434)
163 TIGR00606 rad50 rad50. This fa 24.4 2.6E+03 0.056 31.3 19.5 15 173-187 148-162 (1311)
164 PRK05035 electron transport co 24.1 2.3E+02 0.005 39.0 8.5 12 544-555 424-435 (695)
165 KOG0979 Structural maintenance 23.8 2.1E+03 0.046 31.7 16.9 13 500-512 146-158 (1072)
166 TIGR03185 DNA_S_dndD DNA sulfu 23.4 2E+03 0.044 29.7 17.6 20 349-368 37-56 (650)
167 KOG2963 RNA-binding protein re 23.2 2.2E+02 0.0048 36.4 7.4 10 407-416 199-208 (405)
168 KOG4715 SWI/SNF-related matrix 23.0 2.4E+02 0.0051 35.7 7.5 6 482-487 131-136 (410)
169 KOG4031 Vesicle coat protein c 22.7 4.9E+02 0.011 31.6 9.6 65 623-687 104-169 (216)
170 PRK10246 exonuclease subunit S 22.4 1.7E+03 0.036 32.4 16.4 7 349-355 39-45 (1047)
171 PF04615 Utp14: Utp14 protein; 22.3 3.8E+02 0.0081 37.0 10.0 48 1099-1146 584-633 (735)
172 PRK11448 hsdR type I restricti 21.9 5.3E+02 0.011 37.6 11.5 10 1842-1851 986-995 (1123)
173 PF04156 IncA: IncA protein; 21.7 1.2E+03 0.027 26.5 17.7 135 546-682 56-190 (191)
174 PF04615 Utp14: Utp14 protein; 21.3 8.5E+02 0.019 33.7 12.9 7 1132-1138 596-602 (735)
175 KOG0979 Structural maintenance 21.0 2.4E+03 0.052 31.2 16.6 7 408-414 69-75 (1072)
176 KOG2370 Cactin [Signal transdu 20.9 5.3E+02 0.012 34.4 10.1 11 984-994 445-455 (623)
177 PF06409 NPIP: Nuclear pore co 20.8 1.1E+03 0.024 29.3 12.0 6 745-750 221-226 (265)
178 PF07415 Herpes_LMP2: Gammaher 20.7 34 0.00074 43.0 0.1 41 93-133 14-54 (489)
179 COG3122 Uncharacterized protei 20.4 4.3E+02 0.0094 31.5 8.4 57 606-662 59-115 (215)
180 KOG4572 Predicted DNA-binding 20.4 2.7E+03 0.059 30.1 17.6 14 472-486 711-724 (1424)
181 KOG0386 Chromatin remodeling c 20.2 1.2E+03 0.027 33.9 13.8 21 1537-1557 965-985 (1157)
182 KOG0018 Structural maintenance 20.2 2.1E+03 0.046 31.9 15.9 16 1062-1077 639-654 (1141)
183 PRK13203 ureB urease subunit b 20.2 38 0.00083 36.5 0.3 14 2075-2088 37-50 (102)
No 1
>PTZ00121 MAEBL; Provisional
Probab=98.89 E-value=1.7e-08 Score=131.28 Aligned_cols=10 Identities=50% Similarity=0.610 Sum_probs=6.4
Q ss_pred cccccccccC
Q 000063 82 SLRKEHERFD 91 (2469)
Q Consensus 82 SlrkeHe~~d 91 (2469)
---+.-+|||
T Consensus 603 pq~~~m~rfd 612 (2084)
T PTZ00121 603 PQQKFMERFD 612 (2084)
T ss_pred cHHHHHHhcC
Confidence 3456677777
No 2
>PTZ00121 MAEBL; Provisional
Probab=98.86 E-value=2.7e-08 Score=129.45 Aligned_cols=8 Identities=38% Similarity=0.704 Sum_probs=4.2
Q ss_pred ccccCCCC
Q 000063 318 AYWEGDFD 325 (2469)
Q Consensus 318 ~~w~~~fd 325 (2469)
+.|+.+|+
T Consensus 832 pC~e~~~~ 839 (2084)
T PTZ00121 832 PCLEGSFG 839 (2084)
T ss_pred ccCCCCCC
Confidence 45555554
No 3
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=4.2e-07 Score=114.07 Aligned_cols=33 Identities=36% Similarity=0.362 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000063 624 ETREAVWRAEQEQLEATRKAEEQRIAREEERQR 656 (2469)
Q Consensus 624 EEREeEeeEEKEReEAeRKEEEERrRREEEErR 656 (2469)
.+||+++++|.++.|++|+|.|+.++-|-|+.|
T Consensus 385 ~qrEEerkkeie~rEaar~ElEkqRqlewErar 417 (1118)
T KOG1029|consen 385 RQREEERKKEIERREAAREELEKQRQLEWERAR 417 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555554444444444433
No 4
>PF07001 BAT2_N: BAT2 N-terminus; InterPro: IPR009738 This entry represents the N terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin [].
Probab=98.56 E-value=1.9e-07 Score=104.28 Aligned_cols=73 Identities=33% Similarity=0.535 Sum_probs=50.5
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeeccCccccccCCccccCCCCCCCcccccc
Q 000063 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (2469)
Q Consensus 8 ~k~~svnln~~yg~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~gggm~vlsr~r~~~~~~~~klsvp~PlnlPSlrkeH 87 (2469)
.||.++|||..|--.+.-- + -....-..||.+|++= +.. --||||.||||||.||
T Consensus 16 ~Ky~~l~in~~YkGks~e~---------q---------k~~~~~~hGmqsLGKv------~~a-RRmPpPaNLPSLKaEn 70 (189)
T PF07001_consen 16 PKYSSLNINSLYKGKSLEP---------Q---------KSTVPRRHGMQSLGKV------PSA-RRMPPPANLPSLKAEN 70 (189)
T ss_pred ccceeechhhhhcCCcccc---------c---------cCCccCCCcceecccc------ccc-ccCCCCCCCcchhhhc
Confidence 3899999999993333210 1 1122236799999982 111 1289999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000063 88 ERFDSSGSNGGPAGGGVSGAGQRPGSSGTGWT 119 (2469)
Q Consensus 88 e~~ds~g~~~g~~~~~~~g~g~rp~ssg~gwt 119 (2469)
.++| |+...|+.. |.||+
T Consensus 71 ~GnD-------pnv~lVP~~-------GsGWa 88 (189)
T PF07001_consen 71 KGND-------PNVSLVPKG-------GSGWA 88 (189)
T ss_pred cCCC-------CCceeecCC-------CcCcc
Confidence 9999 776655543 46998
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=3.8e-06 Score=105.81 Aligned_cols=14 Identities=36% Similarity=0.874 Sum_probs=8.0
Q ss_pred CCccccCCCCCCCC
Q 000063 872 GDVGWGQGRYRGNV 885 (2469)
Q Consensus 872 GD~gW~~s~s~g~p 885 (2469)
|..||..+.-+|.+
T Consensus 726 aEPGWlaGel~gkt 739 (1118)
T KOG1029|consen 726 AEPGWLAGELRGKT 739 (1118)
T ss_pred CCcccccceecccc
Confidence 55666665555543
No 6
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=98.42 E-value=8.2e-06 Score=99.36 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=21.0
Q ss_pred hhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000063 551 VKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALELAR 601 (2469)
Q Consensus 551 VRKKKEaaKqaE~EdK~REEeEAELERRqEeEEEERqReEEEQEREeEEeR 601 (2469)
++.++....+.+.++..+.+.+++..++++..|+++.+.+++++.+.++++
T Consensus 67 ~q~q~~~~~~~e~~r~~~~~~~aeel~~~~~~eq~rlk~le~er~~~~~~~ 117 (387)
T PRK09510 67 QQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQK 117 (387)
T ss_pred HHHhHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333334444455555555444444443333
No 7
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.41 E-value=2.6e-06 Score=112.97 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=8.9
Q ss_pred CCceEEeeccCcccc
Q 000063 52 GGGMLVLSRPRSSQK 66 (2469)
Q Consensus 52 gggm~vlsr~r~~~~ 66 (2469)
+=|.|.|.+.+....
T Consensus 25 gFGtVYLAkdk~tg~ 39 (1021)
T PTZ00266 25 RFGEVFLVKHKRTQE 39 (1021)
T ss_pred CCeEEEEEEECCCCe
Confidence 345677777665543
No 8
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.33 E-value=4.9e-06 Score=110.49 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=7.5
Q ss_pred CCCcCCcccccccc
Q 000063 850 GDHYGRNIEMESDF 863 (2469)
Q Consensus 850 gDt~gr~~e~dsdf 863 (2469)
+|+|+++ +|+.=+
T Consensus 691 ~~~~~~~-~~~~~~ 703 (1021)
T PTZ00266 691 QDTFDRN-DMHGYM 703 (1021)
T ss_pred ccccchh-hhhHHh
Confidence 5677776 455433
No 9
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=98.28 E-value=1.3e-05 Score=94.13 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=21.8
Q ss_pred hhhhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000063 549 GVVKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQER 595 (2469)
Q Consensus 549 alVRKKKEaaKqaE~EdK~REEeEAELERRqEeEEEERqReEEEQER 595 (2469)
..++.+++.+++.+.++..+.+.+.|+.+..+..|+||.+..|+++.
T Consensus 65 ~r~q~Q~~~akk~e~~r~kk~e~~aEel~~~q~aEqErlkQle~er~ 111 (387)
T COG3064 65 GRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERL 111 (387)
T ss_pred HHHHHHHHHHhhhHHHHHhhhHHHHHhhccccccHHHHHHHHHHHHH
Confidence 44555555556655555555444433322333344444444433333
No 10
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.19 E-value=3.6e-05 Score=96.74 Aligned_cols=20 Identities=30% Similarity=0.200 Sum_probs=10.6
Q ss_pred CCCcceEEEeecccCCCCCC
Q 000063 1272 QAETPVKLQFGLFSGPSLIP 1291 (2469)
Q Consensus 1272 ~~E~pv~LqFGlfsGpsLip 1291 (2469)
++.++|+-|+-.--|++--|
T Consensus 750 ~~~lqv~~qw~y~l~~~~sp 769 (811)
T KOG4364|consen 750 DSRLQVKKQWLYKLGLSPSP 769 (811)
T ss_pred cccccccceeeeeecCCCCC
Confidence 34566666665555544333
No 11
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.02 E-value=7.7e-05 Score=93.89 Aligned_cols=6 Identities=33% Similarity=0.551 Sum_probs=3.6
Q ss_pred CCCccc
Q 000063 766 PFNSWR 771 (2469)
Q Consensus 766 Pi~SWa 771 (2469)
||.+|.
T Consensus 401 pFeikd 406 (811)
T KOG4364|consen 401 PFEIKD 406 (811)
T ss_pred cchhhc
Confidence 666653
No 12
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=97.96 E-value=0.00042 Score=84.96 Aligned_cols=7 Identities=14% Similarity=0.183 Sum_probs=3.0
Q ss_pred ccccccc
Q 000063 724 RMVERIT 730 (2469)
Q Consensus 724 RmvERIt 730 (2469)
.+++++.
T Consensus 257 ~~~dd~~ 263 (387)
T PRK09510 257 AEVDDLF 263 (387)
T ss_pred HHHHHHh
Confidence 3444443
No 13
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=97.95 E-value=0.00022 Score=90.50 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=22.9
Q ss_pred cCCCCCCcCCccccccccccccccccCCccccC
Q 000063 846 MSGDGDHYGRNIEMESDFHENITERYGDVGWGQ 878 (2469)
Q Consensus 846 ipGDgDt~gr~~e~dsdf~en~~erfGD~gW~~ 878 (2469)
....+.+-.|-.||-++=||.+-+|+|.-.+.+
T Consensus 1210 LeeTgL~rKrGAEI~~~eFe~~W~r~Ggk~~~~ 1242 (1259)
T KOG0163|consen 1210 LEETGLTRKRGAEILEHEFEREWERNGGKAYKN 1242 (1259)
T ss_pred hHhhccccccccccChHHHHHHHHHhCcHHhHh
Confidence 344455667888888877787777888766655
No 14
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.75 E-value=0.00091 Score=78.09 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=10.3
Q ss_pred hhhhhhhhcccccCCchhhHHH
Q 000063 551 VKKKKDVLKQTDFHDPVRESFE 572 (2469)
Q Consensus 551 VRKKKEaaKqaE~EdK~REEeE 572 (2469)
|-|+.|..++.+.++...+++|
T Consensus 275 iakraeerrqieterlrqeeee 296 (445)
T KOG2891|consen 275 IAKRAEERRQIETERLRQEEEE 296 (445)
T ss_pred HHHHHHHHhhhhHHHHhhhHhh
Confidence 3444555555555444444444
No 15
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.69 E-value=0.0017 Score=75.89 Aligned_cols=7 Identities=0% Similarity=-0.225 Sum_probs=3.3
Q ss_pred CCCCCCC
Q 000063 435 SGRRDID 441 (2469)
Q Consensus 435 tGGRDS~ 441 (2469)
..|+-||
T Consensus 203 mn~kisg 209 (445)
T KOG2891|consen 203 MNGKISG 209 (445)
T ss_pred hcCcccc
Confidence 4444444
No 16
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=97.65 E-value=0.0006 Score=86.73 Aligned_cols=21 Identities=57% Similarity=0.703 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000063 606 ERLRVAREQEEQRRRLEEETR 626 (2469)
Q Consensus 606 EReReaREEEERRRReEEEER 626 (2469)
|.+|+++|+||+++++++|.+
T Consensus 934 E~ER~rrEaeek~rre~ee~k 954 (1259)
T KOG0163|consen 934 EAERKRREAEEKRRREEEEKK 954 (1259)
T ss_pred HHHHHhhhhhHHHHHHHHHHH
Confidence 334444455555554444443
No 17
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.014 Score=76.09 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=9.5
Q ss_pred CCCCCCCcccccc
Q 000063 762 DRGKPFNSWRRDA 774 (2469)
Q Consensus 762 dR~KPi~SWaR~~ 774 (2469)
.|+-+.+.|+|..
T Consensus 897 ~~a~~~~~WrR~a 909 (988)
T KOG2072|consen 897 PRAPEEAEWRRGA 909 (988)
T ss_pred CCCCcchHHhhcc
Confidence 4555778888886
No 18
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.58 E-value=0.0055 Score=76.62 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=24.9
Q ss_pred ccccCCCCCCCCCCCCCCCCCCC-cCCCCCCC--cccccCCCCCccccc
Q 000063 786 QDAENGHYSPRRDSAFGGRAVPR-KEFYGGPG--IMSSRNYYKAGILEP 831 (2469)
Q Consensus 786 qd~EN~~~sPrrDs~fg~rsfpr-K~f~gG~G--fvsK~sY~ggG~tD~ 831 (2469)
.|+--+.|-|..-.--|+-++.+ .++.+||| |+.|++..|.|+.-+
T Consensus 781 gd~regqHyp~~~~~hGGp~erHgrdsrdGwgGygsdKr~seGrGlppp 829 (940)
T KOG4661|consen 781 GDYREGQHYPLSGTVHGGPSERHGRDSRDGWGGYGSDKRNSEGRGLPPP 829 (940)
T ss_pred ccchhhcccCccCccCCCchhhccCccCCCcccccccccccCCCCCCCC
Confidence 45455544442211123333443 56677776 888998766665543
No 19
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=97.42 E-value=0.0026 Score=80.20 Aligned_cols=11 Identities=0% Similarity=0.123 Sum_probs=4.9
Q ss_pred ccccccccccC
Q 000063 454 VHSFNSQRAER 464 (2469)
Q Consensus 454 VSSwg~K~~Er 464 (2469)
+..|++.....
T Consensus 93 ~~aygY~~~~a 103 (489)
T PF05262_consen 93 EAAYGYSDEDA 103 (489)
T ss_pred HHhcCCChhhH
Confidence 34445544443
No 20
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.29 E-value=0.0015 Score=81.32 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=33.1
Q ss_pred CCCCCCCCCCCCCCCCCccccccCcCCccccccccccccccC-CCCCcccCCCcCCCCCCcccc-ccccccCCCcccccC
Q 000063 322 GDFDMPRPSVLPHKPAHNVFERWGQRDSETGKVSSSEVARVD-PFGRDIRAPSREGREGNMWRA-SSSLQKDGFGALDIG 399 (2469)
Q Consensus 322 ~~fd~p~~~~~p~k~~~~~~~~~g~r~~e~~k~~~~e~~~~~-~~~~d~~~~~reg~e~nsWR~-sspl~k~w~~aqd~g 399 (2469)
+.|||---.-||+-|.-+.-. ..-.+|.++++-.+-. +..++ .-+|.+---|+|.. +|.+. .|.|.+
T Consensus 355 rKfdfdAcnevpPapkeSSTs-----egAdqkmSs~~~~~d~k~~~k~--ekgrs~~gRNlWVSGLSstT----RAtDLK 423 (940)
T KOG4661|consen 355 RKFDFDACNEVPPAPKESSTS-----EGADQKMSSSGSSADNKTGAKS--EKGRSTLGRNLWVSGLSSTT----RATDLK 423 (940)
T ss_pred ccccccccccCCCCCcccccc-----ccccccccCccccccccccccc--cccccccccceeeeccccch----hhhHHH
Confidence 467887777777666554222 2234555554432111 00001 12233444578864 22222 566666
Q ss_pred CCC
Q 000063 400 DNR 402 (2469)
Q Consensus 400 neR 402 (2469)
|-+
T Consensus 424 nlF 426 (940)
T KOG4661|consen 424 NLF 426 (940)
T ss_pred HHH
Confidence 633
No 21
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=97.27 E-value=0.0091 Score=72.86 Aligned_cols=10 Identities=40% Similarity=0.521 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 000063 581 MQEQERQRII 590 (2469)
Q Consensus 581 eEEEERqReE 590 (2469)
..|+++.+..
T Consensus 85 ~~eq~r~~~l 94 (346)
T TIGR02794 85 AAEQARQKEL 94 (346)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 22
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.00073 Score=86.61 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=4.8
Q ss_pred cceecccccce
Q 000063 1132 SNLVLGFNEGV 1142 (2469)
Q Consensus 1132 ~~~vlgf~egv 1142 (2469)
|-+|||=-.|-
T Consensus 730 D~IvvcG~~Gp 740 (1064)
T KOG1144|consen 730 DQIVVCGLQGP 740 (1064)
T ss_pred CEEEEcCCCCc
Confidence 55444433343
No 23
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=97.18 E-value=0.013 Score=74.00 Aligned_cols=23 Identities=0% Similarity=-0.272 Sum_probs=15.7
Q ss_pred ccchhhhhcccccCccccCCCCC
Q 000063 829 LEPHMDEFTVSRGQRWNMSGDGD 851 (2469)
Q Consensus 829 tD~~LeDYr~~~p~rWnipGDgD 851 (2469)
-|..|+.++..||=.=.|+.+.+
T Consensus 424 ~dlllA~l~KkCP~~VPf~~~~~ 446 (591)
T KOG2412|consen 424 GDLLLARLHKKCPYVVPFHIVNS 446 (591)
T ss_pred HHHHHHHHHhcCCccccccccCc
Confidence 34477888888887666666555
No 24
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=97.13 E-value=0.013 Score=73.91 Aligned_cols=7 Identities=14% Similarity=0.691 Sum_probs=2.7
Q ss_pred ccccCcc
Q 000063 838 VSRGQRW 844 (2469)
Q Consensus 838 ~~~p~rW 844 (2469)
......|
T Consensus 458 ~~d~nk~ 464 (591)
T KOG2412|consen 458 AWDSNKW 464 (591)
T ss_pred ccccccc
Confidence 3333344
No 25
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=96.92 E-value=0.054 Score=64.71 Aligned_cols=8 Identities=38% Similarity=0.480 Sum_probs=5.1
Q ss_pred CCCCCCCc
Q 000063 536 SFDGRDPF 543 (2469)
Q Consensus 536 gfdGrDP~ 543 (2469)
..-|+||.
T Consensus 25 ~~~~FDP~ 32 (276)
T PF12037_consen 25 TASGFDPE 32 (276)
T ss_pred ccCCCCcH
Confidence 34477776
No 26
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.11 Score=64.75 Aligned_cols=8 Identities=50% Similarity=0.754 Sum_probs=5.3
Q ss_pred CCCCCCCc
Q 000063 536 SFDGRDPF 543 (2469)
Q Consensus 536 gfdGrDP~ 543 (2469)
...|+||.
T Consensus 69 ~~~gFDpe 76 (630)
T KOG0742|consen 69 SWSGFDPE 76 (630)
T ss_pred cccCCChH
Confidence 34478887
No 27
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.12 Score=68.02 Aligned_cols=6 Identities=17% Similarity=0.014 Sum_probs=2.3
Q ss_pred cccccc
Q 000063 724 RMVERI 729 (2469)
Q Consensus 724 RmvERI 729 (2469)
+-.+.+
T Consensus 888 a~~~~~ 893 (988)
T KOG2072|consen 888 AGPDAI 893 (988)
T ss_pred ccccCC
Confidence 334433
No 28
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.033 Score=65.07 Aligned_cols=14 Identities=29% Similarity=0.155 Sum_probs=9.3
Q ss_pred CCCCCcCCCCCCCc
Q 000063 756 NSSGFLDRGKPFNS 769 (2469)
Q Consensus 756 ~sSSfldR~KPi~S 769 (2469)
+....-||||+|-.
T Consensus 244 ltGVmDDRGKfIYI 257 (299)
T KOG3054|consen 244 LTGVMDDRGKFIYI 257 (299)
T ss_pred heeeecCCCceEEe
Confidence 45556688887755
No 29
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.11 Score=64.64 Aligned_cols=11 Identities=36% Similarity=0.534 Sum_probs=5.7
Q ss_pred ccccccccccc
Q 000063 722 GERMVERITTS 732 (2469)
Q Consensus 722 ~ERmvERItTS 732 (2469)
+++.++-|+|.
T Consensus 253 Rekwl~aInTt 263 (630)
T KOG0742|consen 253 REKWLEAINTT 263 (630)
T ss_pred HHHHHHHHhhh
Confidence 44555555544
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.07 E-value=0.016 Score=76.77 Aligned_cols=7 Identities=43% Similarity=0.563 Sum_probs=2.7
Q ss_pred hhhhhhh
Q 000063 548 VGVVKKK 554 (2469)
Q Consensus 548 ~alVRKK 554 (2469)
++++-+|
T Consensus 756 ~a~v~kk 762 (1018)
T KOG2002|consen 756 LALVLKK 762 (1018)
T ss_pred HHHHHHH
Confidence 3333333
No 31
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.47 E-value=0.81 Score=59.04 Aligned_cols=6 Identities=33% Similarity=0.130 Sum_probs=3.3
Q ss_pred cccccc
Q 000063 780 SSTFIT 785 (2469)
Q Consensus 780 sS~F~P 785 (2469)
.|+|-|
T Consensus 249 ls~fdp 254 (514)
T TIGR03319 249 LSGFDP 254 (514)
T ss_pred ecCCch
Confidence 555654
No 32
>PRK12704 phosphodiesterase; Provisional
Probab=95.17 E-value=1.2 Score=57.78 Aligned_cols=6 Identities=33% Similarity=0.130 Sum_probs=3.0
Q ss_pred cccccc
Q 000063 780 SSTFIT 785 (2469)
Q Consensus 780 sS~F~P 785 (2469)
.|+|.|
T Consensus 255 ls~~~~ 260 (520)
T PRK12704 255 LSGFDP 260 (520)
T ss_pred EecCCh
Confidence 455544
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.07 E-value=0.45 Score=63.21 Aligned_cols=9 Identities=56% Similarity=0.693 Sum_probs=5.0
Q ss_pred cccccccCC
Q 000063 188 SLQAALPAA 196 (2469)
Q Consensus 188 sl~a~lp~~ 196 (2469)
.|+-|||+.
T Consensus 196 ~l~~~lp~~ 204 (697)
T PF09726_consen 196 LLQQALPPE 204 (697)
T ss_pred HHHHhCCCc
Confidence 455566554
No 34
>PRK00106 hypothetical protein; Provisional
Probab=94.97 E-value=1.5 Score=56.93 Aligned_cols=6 Identities=33% Similarity=0.130 Sum_probs=3.4
Q ss_pred cccccc
Q 000063 780 SSTFIT 785 (2469)
Q Consensus 780 sS~F~P 785 (2469)
.|+|-|
T Consensus 270 lS~fdp 275 (535)
T PRK00106 270 LSGFDP 275 (535)
T ss_pred EeCCCh
Confidence 556654
No 35
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=94.57 E-value=0.17 Score=63.66 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=13.2
Q ss_pred hhhcccchhHhhhccccccc
Q 000063 201 KKQKDGFSQKQKQGMSQELG 220 (2469)
Q Consensus 201 ~k~k~~~~qkqkq~~~~~~~ 220 (2469)
||.-+-|.-||+|.|+.--+
T Consensus 115 kkkmea~fakqrqklgksaf 134 (708)
T KOG3654|consen 115 KKKMEAIFAKQRQKLGKSAF 134 (708)
T ss_pred HHHHHHHHHHHHHHhchhhe
Confidence 34455666788888776655
No 36
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=94.42 E-value=3.4 Score=50.12 Aligned_cols=17 Identities=18% Similarity=0.090 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCcccc
Q 000063 502 HNDPMHNFSRDKRPLLK 518 (2469)
Q Consensus 502 ~NDPllNFgReKR~~~k 518 (2469)
.++-...++||+-.+.+
T Consensus 20 ~~~~~~~~~FDP~aLER 36 (276)
T PF12037_consen 20 DNPRTTASGFDPEALER 36 (276)
T ss_pred CCCCcccCCCCcHHHHH
Confidence 44445566777555543
No 37
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=93.27 E-value=0.42 Score=60.39 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=10.0
Q ss_pred CCCCCCCcccccccccC
Q 000063 75 PPPLNLPSLRKEHERFD 91 (2469)
Q Consensus 75 p~PlnlPSlrkeHe~~d 91 (2469)
+.||.--+-.++||--|
T Consensus 17 s~~l~ed~~~~~~ed~d 33 (708)
T KOG3654|consen 17 SKPLSEDPTKAPVEDPD 33 (708)
T ss_pred CcccccccccCCcCCCc
Confidence 44555445556777666
No 38
>PRK12705 hypothetical protein; Provisional
Probab=92.78 E-value=3.7 Score=53.30 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=6.0
Q ss_pred hhhhhhhhhhhhc
Q 000063 547 LVGVVKKKKDVLK 559 (2469)
Q Consensus 547 m~alVRKKKEaaK 559 (2469)
++..++++....+
T Consensus 21 ~~~~~~~~~~~~~ 33 (508)
T PRK12705 21 LVVLLKKRQRLAK 33 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555554443
No 39
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.29 E-value=5.2 Score=50.95 Aligned_cols=8 Identities=38% Similarity=0.331 Sum_probs=3.7
Q ss_pred cccCCCCC
Q 000063 787 DAENGHYS 794 (2469)
Q Consensus 787 d~EN~~~s 794 (2469)
|++|+.++
T Consensus 358 dhG~gy~s 365 (420)
T COG4942 358 DHGGGYHS 365 (420)
T ss_pred EcCCccEE
Confidence 44444444
No 40
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=92.26 E-value=1.2 Score=54.57 Aligned_cols=114 Identities=19% Similarity=0.169 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCccccccCCCCCCCcCC---CCCCccccccccc---c
Q 000063 878 QGRYRGNVHPPYPDRIYPNPETDVISSFGRSRYSMRHPRVLPPPTLTSMQKPSYRRENEC---PSPSTFQENEVEY---N 951 (2469)
Q Consensus 878 ~s~s~g~p~PP~~~R~YqnsD~d~~~sfgR~RysmRqPRVlPPP~~~s~~r~s~~~~~~~---p~pstf~~~~~~~---~ 951 (2469)
..-.+.+|-||+--|.--.-+ .+.- --+-||-++||+.+.+-++ ..|++-. |+-|+....-+-- -
T Consensus 372 a~nN~en~~PP~e~~lala~e--~P~E------~ggcP~~ie~~VpmPsPl~-S~GsslspS~~ASSSlt~~pcSSPV~~ 442 (561)
T KOG1103|consen 372 AANNRENPAPPPEARLALAAE--FPTE------KGGCPRAIEPAVPMPSPLM-SIGSSLSPSLPASSSLTPRPCSSPVKK 442 (561)
T ss_pred ccccccCCCCCchhccccccc--Cccc------cCCCCCCCCCCCCCCCccc-ccccccCCCCcccccCCCCCCCCcccc
Confidence 344566777776666511111 0000 1156888888888887773 3443332 2222222111100 0
Q ss_pred cccccccccccccccccccccCCCcccccCCCCchhhhccccccccCccCCCcccccccC
Q 000063 952 RLLRSESISLAGLDRSEQHNLAQPEIIDVQPESTENEEQNLERSTTSRCDSQSSLSVSSA 1011 (2469)
Q Consensus 952 ~~~r~e~~~~~~y~~~~~~~~~~~~~i~~~~~~a~~E~q~~dr~~t~~~dsQsSLSvssp 1011 (2469)
.-.-.-+..-++|.++||+...|-- +| --|++- ++.-.|-|+|.-.|+|
T Consensus 443 k~llGssaSSp~~qssyqvginqrf-------ha--aRhkf~--aqad~dqqasgl~sp~ 491 (561)
T KOG1103|consen 443 KPLLGSSASSPAVQSSYQVGINQRF-------HA--ARHKFA--AQADMDQQASGLNSPA 491 (561)
T ss_pred ccccccccCChhhhhhhhhcchhhh-------hh--ccchhh--hcccCcccccccCCCc
Confidence 0000113345678888885444322 11 123333 4566677777666554
No 41
>KOG4817 consensus Unnamed protein [Function unknown]
Probab=91.38 E-value=3 Score=51.85 Aligned_cols=75 Identities=36% Similarity=0.509 Sum_probs=47.1
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeeccCccccccCCccccCCCCCCCcccccc
Q 000063 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (2469)
Q Consensus 8 ~k~~svnln~~yg~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~gggm~vlsr~r~~~~~~~~klsvp~PlnlPSlrkeH 87 (2469)
.||--|-||..|--.- .-.+- ..-..-+-||-.|.+ + ..---.|||-||||||-|-
T Consensus 15 ~K~talsin~~ykg~~-----------~~~aq------R~~vp~RhGmQslGK------a-~v~rrmpPPAnLPSLkaEn 70 (468)
T KOG4817|consen 15 PKFTALSINRMYKGSR-----------EPSAQ------RNQVPRRHGMQSLGK------A-KVPRRMPPPANLPSLKAEN 70 (468)
T ss_pred cCcceeehhhhhcCCc-----------CCccc------ccCCCccchhhhhcc------c-cccccCCCCCCCcchhhcc
Confidence 5888888888884331 00000 112233678877764 1 2223579999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000063 88 ERFDSSGSNGGPAGGGVSGAGQRPGSSGTGWTK 120 (2469)
Q Consensus 88 e~~ds~g~~~g~~~~~~~g~g~rp~ssg~gwtk 120 (2469)
-+.| |..-.|+--| +||.+
T Consensus 71 ~g~d-------pn~~lVp~~G-------Tgw~~ 89 (468)
T KOG4817|consen 71 HGSD-------PNNLLVPVEG-------TGWGG 89 (468)
T ss_pred cCCC-------CCceeeecCC-------ccccc
Confidence 9999 7655444333 47764
No 42
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=91.19 E-value=4.7 Score=54.64 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=6.9
Q ss_pred cCCCCCCeeeccCC
Q 000063 277 YFPGPLPLVRLKPR 290 (2469)
Q Consensus 277 ~~~gplplvrl~~~ 290 (2469)
+|.-|..+|-||-+
T Consensus 217 ~~~ep~~~~~ln~~ 230 (771)
T TIGR01069 217 FYIEPQAIVKLNNK 230 (771)
T ss_pred EEEEcHHHHHHHHH
Confidence 44445555555443
No 43
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=91.10 E-value=0.63 Score=59.73 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=8.9
Q ss_pred cccCCCCCCCCCCCCC
Q 000063 875 GWGQGRYRGNVHPPYP 890 (2469)
Q Consensus 875 gW~~s~s~g~p~PP~~ 890 (2469)
-|+...+.++..|.+-
T Consensus 459 ~w~~~~~e~~~~~~~~ 474 (492)
T PF02029_consen 459 QWLTKTPEGSKSPAPK 474 (492)
T ss_pred HhhcCCCCCCCCCCCC
Confidence 3666666666554443
No 44
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=90.55 E-value=0.57 Score=58.67 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=6.8
Q ss_pred cccccccccccc
Q 000063 858 EMESDFHENITE 869 (2469)
Q Consensus 858 e~dsdf~en~~e 869 (2469)
++=+.|-.+|.|
T Consensus 422 r~~s~f~~~f~w 433 (506)
T KOG2507|consen 422 RRVSSFANPFSW 433 (506)
T ss_pred HHHHHHhccCCC
Confidence 345566666644
No 45
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=90.25 E-value=6.9 Score=53.17 Aligned_cols=7 Identities=43% Similarity=0.762 Sum_probs=2.7
Q ss_pred CCCeeec
Q 000063 281 PLPLVRL 287 (2469)
Q Consensus 281 plplvrl 287 (2469)
|..+|-|
T Consensus 226 p~~~~~l 232 (782)
T PRK00409 226 PQSVVEL 232 (782)
T ss_pred cHHHHHH
Confidence 3333333
No 46
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=90.24 E-value=9.6 Score=48.12 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=10.5
Q ss_pred ccccccCCCCchhhhcc
Q 000063 189 LQAALPAASGSEKKQKD 205 (2469)
Q Consensus 189 l~a~lp~~~~~~~k~k~ 205 (2469)
|||..|+--+++.|-|+
T Consensus 82 lqagtpplqVnEEk~~a 98 (672)
T KOG4722|consen 82 LQAGTPPLQVNEEKEKA 98 (672)
T ss_pred HhcCCCCCCCchhhccc
Confidence 56666766666655544
No 47
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.36 E-value=6.6 Score=51.94 Aligned_cols=7 Identities=43% Similarity=0.610 Sum_probs=2.7
Q ss_pred ccCCCCc
Q 000063 155 YVPPSVR 161 (2469)
Q Consensus 155 ~~~~s~~ 161 (2469)
|.+|+.+
T Consensus 26 ~~~p~qp 32 (668)
T KOG2253|consen 26 YVVPIQP 32 (668)
T ss_pred cccCCcc
Confidence 3333333
No 48
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.34 E-value=2.8 Score=50.61 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCcCCC
Q 000063 798 DSAFGGRAVPRKEFY 812 (2469)
Q Consensus 798 Ds~fg~rsfprK~f~ 812 (2469)
|++-=|+.|||+.|.
T Consensus 249 ~P~~f~t~fPR~tf~ 263 (290)
T KOG2689|consen 249 DPYSFHTGFPRVTFT 263 (290)
T ss_pred CCeeeecCCCceecc
Confidence 555567888887775
No 49
>PLN02316 synthase/transferase
Probab=89.17 E-value=7.7 Score=54.14 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=4.6
Q ss_pred hhHhhhccc
Q 000063 267 RSEQVRKQE 275 (2469)
Q Consensus 267 ~~e~~rk~~ 275 (2469)
+.|+.||+.
T Consensus 120 ~~~~~~~~~ 128 (1036)
T PLN02316 120 ERENLRKRE 128 (1036)
T ss_pred hHHHHHHHH
Confidence 345555554
No 50
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=88.63 E-value=36 Score=43.24 Aligned_cols=7 Identities=57% Similarity=0.857 Sum_probs=5.1
Q ss_pred CCCCCCc
Q 000063 537 FDGRDPF 543 (2469)
Q Consensus 537 fdGrDP~ 543 (2469)
|+|.|..
T Consensus 142 F~GEDl~ 148 (379)
T PF05914_consen 142 FDGEDLN 148 (379)
T ss_pred cccccCC
Confidence 6777766
No 51
>PLN02316 synthase/transferase
Probab=87.93 E-value=5.6 Score=55.41 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=5.5
Q ss_pred CccccccccCCC
Q 000063 768 NSWRRDAFESGN 779 (2469)
Q Consensus 768 ~SWaR~~flrq~ 779 (2469)
+.|=+..|-++.
T Consensus 509 ev~~~g~~NrWt 520 (1036)
T PLN02316 509 EVWFRGSFNRWT 520 (1036)
T ss_pred eEEEEccccCcC
Confidence 344444444444
No 52
>PTZ00491 major vault protein; Provisional
Probab=87.70 E-value=11 Score=51.46 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCCCCCCC
Q 000063 497 GRGFPHNDPMHNFSRDK 513 (2469)
Q Consensus 497 ~rGll~NDPllNFgReK 513 (2469)
.+|+--..+.-.||+..
T Consensus 583 IR~aVA~~~Fd~FHkns 599 (850)
T PTZ00491 583 VRAAVASEPFDEFHKNS 599 (850)
T ss_pred HHHHHhcCCHHHHhccH
Confidence 44555555555555543
No 53
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.33 E-value=18 Score=48.26 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=5.9
Q ss_pred cccCCccccCC
Q 000063 477 RFRGDAFQRSS 487 (2469)
Q Consensus 477 ry~G~sfQnsS 487 (2469)
+|-|.+.-|..
T Consensus 713 ~dsg~~s~~~~ 723 (1187)
T KOG0579|consen 713 DDSGNASENAA 723 (1187)
T ss_pred CccCccccccC
Confidence 35565655544
No 54
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=87.27 E-value=1 Score=56.49 Aligned_cols=8 Identities=50% Similarity=0.953 Sum_probs=4.0
Q ss_pred CCCCcCCC
Q 000063 805 AVPRKEFY 812 (2469)
Q Consensus 805 sfprK~f~ 812 (2469)
.|||++|.
T Consensus 360 pyPRReft 367 (506)
T KOG2507|consen 360 PYPRREFT 367 (506)
T ss_pred cccccccc
Confidence 35555554
No 55
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=86.87 E-value=13 Score=46.86 Aligned_cols=8 Identities=25% Similarity=0.302 Sum_probs=3.1
Q ss_pred ccCCCCCC
Q 000063 518 KREEPYQD 525 (2469)
Q Consensus 518 k~mKp~~E 525 (2469)
..++.-.|
T Consensus 138 ~sekqc~e 145 (442)
T PF06637_consen 138 LSEKQCQE 145 (442)
T ss_pred HhHhhhhH
Confidence 33333333
No 56
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=86.61 E-value=40 Score=44.18 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=6.8
Q ss_pred ccccCCCCCCCCCCCC
Q 000063 318 AYWEGDFDMPRPSVLP 333 (2469)
Q Consensus 318 ~~w~~~fd~p~~~~~p 333 (2469)
+||+..|+-.-...+|
T Consensus 26 A~~n~~f~d~f~~~vP 41 (582)
T PF09731_consen 26 AKQNDNFRDFFEEYVP 41 (582)
T ss_pred hhcChHHHHHHHHhCC
Confidence 3454444433333344
No 57
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=86.11 E-value=22 Score=48.75 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=20.2
Q ss_pred ccccCCCCCCCCCCCCCCC--CCccccccCcCCccccccccccccccCCC
Q 000063 318 AYWEGDFDMPRPSVLPHKP--AHNVFERWGQRDSETGKVSSSEVARVDPF 365 (2469)
Q Consensus 318 ~~w~~~fd~p~~~~~p~k~--~~~~~~~~g~r~~e~~k~~~~e~~~~~~~ 365 (2469)
+-|+++-=.++--|||--. --.+| +|-||+.---+.-||-.
T Consensus 752 pvy~eepfvF~KVvLpeLA~lRiavy-------eEggK~ig~RIlpvd~l 794 (1189)
T KOG1265|consen 752 PVYEEEPFVFRKVVLPELASLRIAVY-------EEGGKFIGQRILPVDGL 794 (1189)
T ss_pred cccccCCcccceecccchhheeeeee-------ccCCceeeeeccchhcc
Confidence 4566553334445777321 11223 46666665555555543
No 58
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=85.79 E-value=52 Score=42.00 Aligned_cols=14 Identities=7% Similarity=0.031 Sum_probs=6.4
Q ss_pred hhhhhhhhhhhccc
Q 000063 548 VGVVKKKKDVLKQT 561 (2469)
Q Consensus 548 ~alVRKKKEaaKqa 561 (2469)
..-++.++++.+..
T Consensus 80 ~~qlr~~rtel~~a 93 (499)
T COG4372 80 RPQLRALRTELGTA 93 (499)
T ss_pred HHHHHHHHHHHHHH
Confidence 33445555544444
No 59
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=85.19 E-value=7 Score=48.38 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=10.3
Q ss_pred cCCCCcccccCCCCCCCCcCC
Q 000063 743 SFDMSSRNQFARDNSSGFLDR 763 (2469)
Q Consensus 743 ~frmg~RvhTSRd~sSSfldR 763 (2469)
..+++.+.|..--..++..||
T Consensus 289 ~~~v~g~~~p~k~~~~sk~dr 309 (361)
T KOG3634|consen 289 PEEVTGRWKPPKVQISSKYDR 309 (361)
T ss_pred hhhhcCCCCCceeehhhhhhh
Confidence 334455555544444454444
No 60
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=84.26 E-value=57 Score=39.02 Aligned_cols=13 Identities=38% Similarity=0.457 Sum_probs=6.5
Q ss_pred ccCCCC-CCCCCCc
Q 000063 531 DFGSSS-FDGRDPF 543 (2469)
Q Consensus 531 DfGaSg-fdGrDP~ 543 (2469)
-||.-| .-|-||-
T Consensus 65 ~fGRYG~aSgV~P~ 78 (217)
T PF10147_consen 65 LFGRYGLASGVDPG 78 (217)
T ss_pred HHHhhhhhcCCChh
Confidence 445444 3355664
No 61
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.20 E-value=30 Score=48.45 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=36.3
Q ss_pred cCCCCCCccCCCccccccccccCCCccccccccCCCCchh--hhcccch---hHhhhcccccccccccCCCCCCCc
Q 000063 162 SGTVGPALSSFAPAEKASVLRGEDFPSLQAALPAASGSEK--KQKDGFS---QKQKQGMSQELGNNEQKDGCRFNA 232 (2469)
Q Consensus 162 ~~~~~~~~~~~~~~ek~~vlrgedfpsl~a~lp~~~~~~~--k~k~~~~---qkqkq~~~~~~~~~e~~~~~~~~~ 232 (2469)
+|.++|-...|..+|+-+ --+|+.|-+++++.. ++-...- .||-|.+-+.|..-|.+-.+-.++
T Consensus 1193 tGv~gay~s~f~~me~kl-------~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~ 1261 (1758)
T KOG0994|consen 1193 TGVLGAYASRFLDMEEKL-------EEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNS 1261 (1758)
T ss_pred ccCchhhHhHHHHHHHHH-------HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Confidence 566666555555554332 224566656666555 3322222 377788888888777665554443
No 62
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=83.75 E-value=33 Score=50.93 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=4.7
Q ss_pred CCccccccc
Q 000063 185 DFPSLQAAL 193 (2469)
Q Consensus 185 dfpsl~a~l 193 (2469)
||.-|....
T Consensus 302 ~Y~f~~~~~ 310 (1930)
T KOG0161|consen 302 DYKFLSNGE 310 (1930)
T ss_pred hhhhhcccc
Confidence 555555544
No 63
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=83.29 E-value=43 Score=47.14 Aligned_cols=6 Identities=33% Similarity=0.589 Sum_probs=2.3
Q ss_pred ceEEee
Q 000063 54 GMLVLS 59 (2469)
Q Consensus 54 gm~vls 59 (2469)
||+++.
T Consensus 647 ~~~~~~ 652 (1758)
T KOG0994|consen 647 GMAIPK 652 (1758)
T ss_pred cccccc
Confidence 333333
No 64
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=82.43 E-value=1.5e+02 Score=38.39 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=33.1
Q ss_pred ccccccccCCccccCCCCCCCCCCCCCCCC----CCCCCCCccccccccccccCCCCCCCCCcccccc
Q 000063 864 HENITERYGDVGWGQGRYRGNVHPPYPDRI----YPNPETDVISSFGRSRYSMRHPRVLPPPTLTSMQ 927 (2469)
Q Consensus 864 ~en~~erfGD~gW~~s~s~g~p~PP~~~R~----YqnsD~d~~~sfgR~RysmRqPRVlPPP~~~s~~ 927 (2469)
++|+..-||-.=.++.++|++.+|.+.--| |.++-..-+-+-.-+--+.-.|-|. |.+..+|
T Consensus 471 ~~~~~g~~g~~llA~r~sH~s~~~t~~~~m~~s~~nsnst~~ins~~~~s~~t~~p~~~--Psla~v~ 536 (552)
T KOG2129|consen 471 HDNSIGEPGHRLLAERRSHGSSPPTVVVQMSTSRANSNSTANINSDTHPSSCTSHPQVA--PSLATVH 536 (552)
T ss_pred cccccCCCchhHHHHHHhcCCCCcchhhhhhhhhccCCcccccccccCccccccCcccC--chhheec
Confidence 334444456556667888888888777666 4333333333333333333455554 4555544
No 65
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.09 E-value=20 Score=47.82 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=5.8
Q ss_pred cCCCccccccc
Q 000063 183 GEDFPSLQAAL 193 (2469)
Q Consensus 183 gedfpsl~a~l 193 (2469)
|+-|-++|++.
T Consensus 473 G~~~~s~qs~~ 483 (1187)
T KOG0579|consen 473 GSTFFSPQSSA 483 (1187)
T ss_pred CccccCccccC
Confidence 44555555554
No 66
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=81.90 E-value=1.6e+02 Score=41.24 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=6.0
Q ss_pred ccccCccccCCCCC
Q 000063 838 VSRGQRWNMSGDGD 851 (2469)
Q Consensus 838 ~~~p~rWnipGDgD 851 (2469)
-+.|..|+-....+
T Consensus 608 ld~P~~~~~~~~p~ 621 (980)
T KOG0980|consen 608 LDSPLHWRCLTSPD 621 (980)
T ss_pred cCCCcccCcCCCHH
Confidence 34444554443333
No 67
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=81.73 E-value=0.45 Score=54.64 Aligned_cols=12 Identities=33% Similarity=0.296 Sum_probs=3.7
Q ss_pred CCCCcCCCCCCC
Q 000063 757 SSGFLDRGKPFN 768 (2469)
Q Consensus 757 sSSfldR~KPi~ 768 (2469)
...+-||||+|-
T Consensus 144 tGv~DdrGkfIy 155 (188)
T PF09756_consen 144 TGVIDDRGKFIY 155 (188)
T ss_dssp -EEE-TT--EEE
T ss_pred eeeEcCCCCeEE
Confidence 333445655443
No 68
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=81.71 E-value=9.9 Score=47.15 Aligned_cols=6 Identities=33% Similarity=0.313 Sum_probs=2.7
Q ss_pred cccccc
Q 000063 780 SSTFIT 785 (2469)
Q Consensus 780 sS~F~P 785 (2469)
+++|-+
T Consensus 304 ~sk~dr 309 (361)
T KOG3634|consen 304 SSKYDR 309 (361)
T ss_pred hhhhhh
Confidence 444433
No 69
>PTZ00491 major vault protein; Provisional
Probab=81.38 E-value=15 Score=50.34 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=6.6
Q ss_pred CCcccccCCCC
Q 000063 150 DGVGVYVPPSV 160 (2469)
Q Consensus 150 ~~~~~~~~~s~ 160 (2469)
++.|.|+|..-
T Consensus 198 t~~gaylP~v~ 208 (850)
T PTZ00491 198 RTPGAYLPGVF 208 (850)
T ss_pred eccccccCCCc
Confidence 44667776553
No 70
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=81.14 E-value=48 Score=42.80 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=11.2
Q ss_pred ccccchhhhhcccccCccccCC
Q 000063 827 GILEPHMDEFTVSRGQRWNMSG 848 (2469)
Q Consensus 827 G~tD~~LeDYr~~~p~rWnipG 848 (2469)
.+....++=-...-..+|.-++
T Consensus 244 ~~~~~~~~~~~~~~~~rws~~~ 265 (445)
T PRK13428 244 KVGAPTLEVLRTAVSQRWSANS 265 (445)
T ss_pred CCCHHHHHHHHHHHhCccCccc
Confidence 3344444444555566775554
No 71
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=80.78 E-value=1.7 Score=59.07 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=5.7
Q ss_pred CCCCCCCccccccC
Q 000063 915 PRVLPPPTLTSMQK 928 (2469)
Q Consensus 915 PRVlPPP~~~s~~r 928 (2469)
|....||-..-|.|
T Consensus 896 pll~~~~h~~e~lr 909 (982)
T PF03154_consen 896 PLLPHPPHEHEMLR 909 (982)
T ss_pred CcCCCCCccHHhhh
Confidence 33344444444444
No 72
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=80.32 E-value=57 Score=41.31 Aligned_cols=7 Identities=43% Similarity=0.539 Sum_probs=2.9
Q ss_pred ccCcccc
Q 000063 469 QYGSEQY 475 (2469)
Q Consensus 469 ~ygi~Qy 475 (2469)
+.||.-|
T Consensus 139 ~mGi~I~ 145 (428)
T KOG2668|consen 139 QMGIVIY 145 (428)
T ss_pred hcceEEE
Confidence 3444444
No 73
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=79.93 E-value=53 Score=48.96 Aligned_cols=12 Identities=17% Similarity=-0.070 Sum_probs=6.9
Q ss_pred cccCCCCCCCCC
Q 000063 252 LRENGGINHDTG 263 (2469)
Q Consensus 252 ~~~~~~~~~~~g 263 (2469)
++-++-..|...
T Consensus 453 LDiaGFEIfe~n 464 (1930)
T KOG0161|consen 453 LDIAGFEIFEFN 464 (1930)
T ss_pred eeeccccccCcC
Confidence 355666666554
No 74
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=79.74 E-value=61 Score=44.83 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=8.0
Q ss_pred ccccCcCCccccccccccc
Q 000063 341 FERWGQRDSETGKVSSSEV 359 (2469)
Q Consensus 341 ~~~~g~r~~e~~k~~~~e~ 359 (2469)
|-++--++|-.--|+..|+
T Consensus 740 ~rtrt~~~n~~npvy~eep 758 (1189)
T KOG1265|consen 740 FRTRTVQGNSFNPVYEEEP 758 (1189)
T ss_pred hhhccccCCCCCcccccCC
Confidence 4333334444444443333
No 75
>PRK12472 hypothetical protein; Provisional
Probab=79.67 E-value=33 Score=44.78 Aligned_cols=10 Identities=0% Similarity=-0.489 Sum_probs=6.8
Q ss_pred ccCccccccc
Q 000063 469 QYGSEQYNRF 478 (2469)
Q Consensus 469 ~ygi~Qygry 478 (2469)
.|++|..+|+
T Consensus 122 GiaIHGt~~p 131 (508)
T PRK12472 122 GIALHGGPLP 131 (508)
T ss_pred eEEEecCCCC
Confidence 5677777664
No 76
>PRK12472 hypothetical protein; Provisional
Probab=79.47 E-value=23 Score=46.00 Aligned_cols=8 Identities=13% Similarity=0.019 Sum_probs=3.8
Q ss_pred CCcccccC
Q 000063 746 MSSRNQFA 753 (2469)
Q Consensus 746 mg~RvhTS 753 (2469)
+|..+.|.
T Consensus 368 ~gthvfta 375 (508)
T PRK12472 368 IGTHVFTA 375 (508)
T ss_pred cceEEEEE
Confidence 45555443
No 77
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.31 E-value=44 Score=48.88 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=7.1
Q ss_pred CCCCCCCCceee
Q 000063 1288 SLIPSPFPAIQI 1299 (2469)
Q Consensus 1288 sLipspvPAIQI 1299 (2469)
.+.+.|=|+|+-
T Consensus 830 ~f~~~pe~~~~~ 841 (1486)
T PRK04863 830 AFEADPEAELRQ 841 (1486)
T ss_pred hcCCCcHHHHHH
Confidence 456666666653
No 78
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=77.38 E-value=21 Score=44.00 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=6.6
Q ss_pred CCCccccccCcCCc
Q 000063 336 PAHNVFERWGQRDS 349 (2469)
Q Consensus 336 ~~~~~~~~~g~r~~ 349 (2469)
|++-.||+|=-|+|
T Consensus 3 ~~NiM~D~RV~RGn 16 (291)
T PF06098_consen 3 YGNIMYDRRVVRGN 16 (291)
T ss_pred cccccCCCCcCCCC
Confidence 44455555543333
No 79
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=77.37 E-value=61 Score=47.08 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=3.5
Q ss_pred ccccccc
Q 000063 349 SETGKVS 355 (2469)
Q Consensus 349 ~e~~k~~ 355 (2469)
|-.||..
T Consensus 33 NGsGKS~ 39 (1353)
T TIGR02680 33 NGAGKSK 39 (1353)
T ss_pred CCCcHHH
Confidence 4456643
No 80
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=77.22 E-value=53 Score=41.23 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=6.6
Q ss_pred ccCCCCCCCcccc
Q 000063 518 KREEPYQDDPFMK 530 (2469)
Q Consensus 518 k~mKp~~ED~F~d 530 (2469)
+|-+-...|||+.
T Consensus 51 kYGK~NinDP~~A 63 (561)
T KOG1103|consen 51 KYGKLNINDPFAA 63 (561)
T ss_pred hhcccccCChHHH
Confidence 4444455555543
No 81
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=74.83 E-value=69 Score=42.93 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=5.2
Q ss_pred CCCCCcccchh
Q 000063 538 DGRDPFSAGLV 548 (2469)
Q Consensus 538 dGrDP~t~~m~ 548 (2469)
.-+|.+.+.+.
T Consensus 342 H~RDALAAA~k 352 (652)
T COG2433 342 HERDALAAAYK 352 (652)
T ss_pred hHHHHHHHHHH
Confidence 34555544433
No 82
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=74.76 E-value=45 Score=43.21 Aligned_cols=7 Identities=29% Similarity=-0.036 Sum_probs=3.1
Q ss_pred ccCCccc
Q 000063 478 FRGDAFQ 484 (2469)
Q Consensus 478 y~G~sfQ 484 (2469)
|+-..||
T Consensus 261 ~il~ff~ 267 (446)
T PF07227_consen 261 AILQFFQ 267 (446)
T ss_pred HHHHHHh
Confidence 4444444
No 83
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=74.38 E-value=1e+02 Score=42.11 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=11.0
Q ss_pred CCCCCcCCCCcccccCCCCC
Q 000063 738 SGLHRSFDMSSRNQFARDNS 757 (2469)
Q Consensus 738 sS~eR~frmg~RvhTSRd~s 757 (2469)
+-+.|.++.|.|+.-+..-+
T Consensus 684 dav~rl~ragrrvgi~~~~~ 703 (828)
T PF04094_consen 684 DAVSRLERAGRRVGISVRRD 703 (828)
T ss_pred hHHHHHHhhccccccccccc
Confidence 34455556677765544433
No 84
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.81 E-value=1.8e+02 Score=38.02 Aligned_cols=8 Identities=13% Similarity=-0.043 Sum_probs=2.9
Q ss_pred hhhhhhhh
Q 000063 549 GVVKKKKD 556 (2469)
Q Consensus 549 alVRKKKE 556 (2469)
.+++.-++
T Consensus 222 ~kv~fler 229 (502)
T KOG0982|consen 222 RKVRFLER 229 (502)
T ss_pred HHHHHHHH
Confidence 33333333
No 85
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=73.68 E-value=1.4e+02 Score=38.66 Aligned_cols=15 Identities=27% Similarity=0.250 Sum_probs=7.3
Q ss_pred cCccCCCcccccccC
Q 000063 997 TSRCDSQSSLSVSSA 1011 (2469)
Q Consensus 997 t~~~dsQsSLSvssp 1011 (2469)
+-+|.|=.+-.|=||
T Consensus 383 g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSP 397 (459)
T ss_pred ccccccccceeEECC
Confidence 444555444444444
No 86
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.80 E-value=1.6e+02 Score=41.66 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=14.6
Q ss_pred cccCCCC--CCCCCCcccchhhhhhhhhhhhc
Q 000063 530 KDFGSSS--FDGRDPFSAGLVGVVKKKKDVLK 559 (2469)
Q Consensus 530 dDfGaSg--fdGrDP~t~~m~alVRKKKEaaK 559 (2469)
|.|-..| .+|-.+...+++..+.+-+++..
T Consensus 653 DV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~ 684 (1174)
T KOG0933|consen 653 DVYDPSGTLTGGSRSKGADLLRQLQKLKQAQK 684 (1174)
T ss_pred ceeCCCCcccCCCCCCcccHHHHHHHHHHHHH
Confidence 4444444 33555555555555555444444
No 87
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=71.18 E-value=53 Score=44.75 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=9.2
Q ss_pred CCccccCCCCCCCccc
Q 000063 69 VPKLSVPPPLNLPSLR 84 (2469)
Q Consensus 69 ~~klsvp~PlnlPSlr 84 (2469)
--|-|--.|+| |-++
T Consensus 229 elkrSTel~in-PD~~ 243 (1424)
T KOG4572|consen 229 ELKRSTELPIN-PDEK 243 (1424)
T ss_pred hhccccccCCC-CCCc
Confidence 55666666777 5554
No 88
>PRK04863 mukB cell division protein MukB; Provisional
Probab=71.02 E-value=1.3e+02 Score=44.33 Aligned_cols=29 Identities=31% Similarity=0.303 Sum_probs=13.0
Q ss_pred ccccccCCCcccCCCCCcccccchhhhhc
Q 000063 1090 EYDEDEDGYQEEDVPEGDDENIELTQEFE 1118 (2469)
Q Consensus 1090 eyded~d~y~~edei~~~deni~l~~e~~ 1118 (2469)
-||.-+|=|-.|-.+..=|+..-=++||+
T Consensus 728 L~~~p~d~~li~~~~~~~~~~~~~~~~~~ 756 (1486)
T PRK04863 728 LEDCPEDLYLIEGDPDSFDDSVFSVEELE 756 (1486)
T ss_pred ccCCccceeeecCChhHHhccCccHHHhc
Confidence 34455566654333333244444444444
No 89
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=70.18 E-value=1.9e+02 Score=40.42 Aligned_cols=6 Identities=33% Similarity=0.739 Sum_probs=3.0
Q ss_pred cccccc
Q 000063 780 SSTFIT 785 (2469)
Q Consensus 780 sS~F~P 785 (2469)
.-+|+|
T Consensus 574 r~tflp 579 (1164)
T TIGR02169 574 RATFLP 579 (1164)
T ss_pred Ceeecc
Confidence 345555
No 90
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=69.89 E-value=2.6e+02 Score=39.13 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=3.3
Q ss_pred ccccccc
Q 000063 349 SETGKVS 355 (2469)
Q Consensus 349 ~e~~k~~ 355 (2469)
|-+||..
T Consensus 32 NGsGKS~ 38 (1164)
T TIGR02169 32 NGSGKSN 38 (1164)
T ss_pred CCCCHHH
Confidence 4445544
No 91
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=69.79 E-value=3.1e+02 Score=34.78 Aligned_cols=12 Identities=8% Similarity=-0.003 Sum_probs=5.2
Q ss_pred CCCCcccccccc
Q 000063 377 REGNMWRASSSL 388 (2469)
Q Consensus 377 ~e~nsWR~sspl 388 (2469)
+.-++|+..+.+
T Consensus 54 r~r~~~~lr~~~ 65 (340)
T KOG3756|consen 54 RGRGSLLLRRGF 65 (340)
T ss_pred chhhhhhhhhhh
Confidence 333455544433
No 92
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=68.38 E-value=85 Score=42.23 Aligned_cols=9 Identities=56% Similarity=0.962 Sum_probs=5.1
Q ss_pred ccccccccC
Q 000063 187 PSLQAALPA 195 (2469)
Q Consensus 187 psl~a~lp~ 195 (2469)
|++.+.||.
T Consensus 47 p~~~~~l~~ 55 (594)
T PF05667_consen 47 PSLGSSLPR 55 (594)
T ss_pred ccccCCCcc
Confidence 555555554
No 93
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=68.10 E-value=48 Score=44.30 Aligned_cols=6 Identities=50% Similarity=0.983 Sum_probs=2.4
Q ss_pred cccCCC
Q 000063 308 DRDHGF 313 (2469)
Q Consensus 308 ~rd~gf 313 (2469)
+|.|||
T Consensus 99 Arr~G~ 104 (652)
T COG2433 99 ARRHGI 104 (652)
T ss_pred HHHhCC
Confidence 334443
No 94
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.05 E-value=84 Score=44.71 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=4.3
Q ss_pred CCCCCCCCCC
Q 000063 886 HPPYPDRIYP 895 (2469)
Q Consensus 886 ~PP~~~R~Yq 895 (2469)
+|-+-||+|-
T Consensus 689 tpenvPRLfD 698 (1293)
T KOG0996|consen 689 TPENVPRLFD 698 (1293)
T ss_pred CCCCcchHhh
Confidence 3334445543
No 95
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.32 E-value=59 Score=44.45 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=4.6
Q ss_pred CcccccccccC
Q 000063 81 PSLRKEHERFD 91 (2469)
Q Consensus 81 PSlrkeHe~~d 91 (2469)
|-+.-.|-.+-
T Consensus 83 ~~f~v~~i~~n 93 (717)
T PF10168_consen 83 PLFEVHQISLN 93 (717)
T ss_pred CceeEEEEEEC
Confidence 33444444433
No 96
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=64.20 E-value=1.6e+02 Score=35.89 Aligned_cols=82 Identities=32% Similarity=0.662 Sum_probs=45.5
Q ss_pred CCCCCcccccCCCCCCccCCCCCccccCCCCCCCCcCcccccccCCCCCCCCCcCCcccccC---CCCCCCCCCCcCCCC
Q 000063 2220 TNLPAPIQHLAPGSPLLPLASPLAMFDVSPFQPPSDMSVQARWSHVPAPPLQSVPMSMPLQR---PTDGVLPSQFNHGTS 2296 (2469)
Q Consensus 2220 ~~~p~~~qhl~pg~~~~p~~sp~~mfd~~pfq~s~~m~~q~~w~hvp~~p~~~~p~s~~l~q---~~~~~~~sq~~~~~~ 2296 (2469)
+-|| |-|=-||.+-||=.-+++-||- . +--.||. +|...||-.-|+-. ++++-++.-+|.+.
T Consensus 187 p~mp--i~~g~p~~~p~pg~p~~s~~~~----~----~~~~r~~----~p~~~vp~~pp~~~~~~~~~~q~~~~~~qg~- 251 (341)
T KOG2893|consen 187 PRMP--IGHGPPGGPPMPGPPQRSRFDQ----P----DGGDRWG----PPMRGVPRTPPYENEHEHQDYQAPDDYNQGG- 251 (341)
T ss_pred CcCc--CCCCCCCCCCCCCCCccccccC----C----CCCCCCC----CCcCCCCCCCCcCCcccccccccchhhhcCC-
Confidence 3466 6777777777776677777753 1 1125775 45555555444433 12444444455444
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCcc
Q 000063 2297 ADQSSASNRFPESRNSTPSDSSQNFH 2322 (2469)
Q Consensus 2297 ~d~~~~~~rf~~~~~s~~~~~~~~f~ 2322 (2469)
-..||.+..-+++.. -..|+
T Consensus 252 -----~~~~fr~~~r~~p~~-~s~~~ 271 (341)
T KOG2893|consen 252 -----YDDRFREGDRGGPPG-GSRFD 271 (341)
T ss_pred -----ccccccccccCCCCC-CCCCC
Confidence 245788877666543 34464
No 97
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.00 E-value=1.1e+02 Score=38.23 Aligned_cols=7 Identities=43% Similarity=0.985 Sum_probs=2.8
Q ss_pred CCCCCcc
Q 000063 400 DNRNGIC 406 (2469)
Q Consensus 400 neR~Gig 406 (2469)
|.|-.+|
T Consensus 145 DsRiH~C 151 (406)
T KOG3859|consen 145 DSRIHVC 151 (406)
T ss_pred cCceEEE
Confidence 3343433
No 98
>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]
Probab=63.22 E-value=1.2e+02 Score=37.50 Aligned_cols=13 Identities=15% Similarity=0.567 Sum_probs=4.9
Q ss_pred ccccCCCCCCcCC
Q 000063 843 RWNMSGDGDHYGR 855 (2469)
Q Consensus 843 rWnipGDgDt~gr 855 (2469)
+|.-+-...-+|+
T Consensus 311 RWE~~~P~K~~~~ 323 (331)
T KOG2894|consen 311 RWEPYDPEKKWDK 323 (331)
T ss_pred hCcCCCCccccch
Confidence 3433333333333
No 99
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=63.00 E-value=89 Score=40.73 Aligned_cols=6 Identities=17% Similarity=0.180 Sum_probs=2.4
Q ss_pred cCcCCc
Q 000063 344 WGQRDS 349 (2469)
Q Consensus 344 ~g~r~~ 349 (2469)
-|-|.+
T Consensus 160 CALr~~ 165 (446)
T PF07227_consen 160 CALRHE 165 (446)
T ss_pred hhcccc
Confidence 333444
No 100
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=60.84 E-value=2.7e+02 Score=40.14 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=8.7
Q ss_pred cccccccccccccccCCccc
Q 000063 857 IEMESDFHENITERYGDVGW 876 (2469)
Q Consensus 857 ~e~dsdf~en~~erfGD~gW 876 (2469)
.++|..|..-|..-||++..
T Consensus 599 i~~d~~~~~~~~~~l~~t~I 618 (1163)
T COG1196 599 IDFDPKYEPAVRFVLGDTLV 618 (1163)
T ss_pred hcCCHHHHHHHHHHhCCeEE
Confidence 34454444433344454443
No 101
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=60.71 E-value=1.7e+02 Score=42.19 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=7.6
Q ss_pred cccCccccccccCCccc
Q 000063 468 EQYGSEQYNRFRGDAFQ 484 (2469)
Q Consensus 468 ~~ygi~Qygry~G~sfQ 484 (2469)
.++.+.|.- |.|-.|-
T Consensus 388 ~~f~Gn~LP-FIGfTy~ 403 (1317)
T KOG0612|consen 388 KAFSGNHLP-FIGFTYT 403 (1317)
T ss_pred CCCcCCcCC-eeeeeec
Confidence 355444454 4554444
No 102
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=59.39 E-value=3.3e+02 Score=37.98 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=14.0
Q ss_pred cccccCcCCccCC--ccccccccchh
Q 000063 1061 NMIAPASSISAGD--DEEWAVENDER 1084 (2469)
Q Consensus 1061 ~~~~~~s~vs~~~--d~ew~~~~~e~ 1084 (2469)
-+|+|-.-|+-+| .+-|.+.+---
T Consensus 812 grmnGwlRVyRdd~~~stwl~~wamm 837 (1265)
T KOG0976|consen 812 GRMNGWLRVYRDDAEASTWLLGWAMM 837 (1265)
T ss_pred hhcccceeeeccccchhHHHHHHHHh
Confidence 3566655555555 55677766544
No 103
>PLN03188 kinesin-12 family protein; Provisional
Probab=59.31 E-value=3e+02 Score=40.12 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=10.9
Q ss_pred ccCCCcccccccccccccCC
Q 000063 407 ERPSSLNREANKETKFMSSP 426 (2469)
Q Consensus 407 ~RPsSRnRGaSk~Sky~sSp 426 (2469)
++|++..=.+...+....+|
T Consensus 671 ~~~~~lsi~p~~~~~~l~~p 690 (1320)
T PLN03188 671 ASPSSLSIVPVEVSPVLKSP 690 (1320)
T ss_pred CCccccccccccccccccCC
Confidence 46666666666555553333
No 104
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=59.01 E-value=41 Score=42.88 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=16.0
Q ss_pred cCCCCCCCCcCCCCCCCccccccccCCC-cccccc
Q 000063 752 FARDNSSGFLDRGKPFNSWRRDAFESGN-SSTFIT 785 (2469)
Q Consensus 752 TSRd~sSSfldR~KPi~SWaR~~flrq~-sS~F~P 785 (2469)
-....+|.|.++ ..|+..-.+-+-.+. ++-|-|
T Consensus 411 q~~g~dSg~~~d-d~ynvYD~~wr~~q~~~siYrp 444 (506)
T KOG2441|consen 411 QGKGLDSGFADD-DEYNVYDKPWRGAQDISSIYRP 444 (506)
T ss_pred cccCcccccccc-ccccccccccccCCchhhhhCC
Confidence 345667777666 344444444443333 344433
No 105
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=58.63 E-value=2.7e+02 Score=38.39 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=9.5
Q ss_pred cCCCCCCCCCcc
Q 000063 912 MRHPRVLPPPTL 923 (2469)
Q Consensus 912 mRqPRVlPPP~~ 923 (2469)
||++-|+++|.-
T Consensus 440 ~~~~~~~~~p~~ 451 (916)
T KOG0249|consen 440 MDRMGVMTLPSD 451 (916)
T ss_pred ccCCccccCccc
Confidence 688899998843
No 106
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=58.48 E-value=46 Score=43.03 Aligned_cols=20 Identities=45% Similarity=0.689 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCCCCCCce
Q 000063 36 HSGYYGSNRARPTGGGGGGM 55 (2469)
Q Consensus 36 ~~g~~~~~~~~~~~~~gggm 55 (2469)
++|+.+...+.+|+++||||
T Consensus 71 ~s~~g~~s~~~gg~~~~~g~ 90 (641)
T KOG3915|consen 71 GSGGGGGSSGNGGGGGGGGG 90 (641)
T ss_pred CCCCCccccCCCCCCCCCCC
Confidence 33343344444444555555
No 107
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=57.91 E-value=58 Score=41.61 Aligned_cols=9 Identities=22% Similarity=0.099 Sum_probs=4.5
Q ss_pred CCCCCCccc
Q 000063 447 RQPWNNSVH 455 (2469)
Q Consensus 447 ~QPwn~~VS 455 (2469)
+|+.+.||+
T Consensus 189 kqriIrmVe 197 (506)
T KOG2441|consen 189 KQRIIRMVE 197 (506)
T ss_pred hhhhhhhhh
Confidence 355555544
No 108
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=56.88 E-value=26 Score=49.89 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=6.0
Q ss_pred CCCCCccccccc
Q 000063 376 GREGNMWRASSS 387 (2469)
Q Consensus 376 g~e~nsWR~ssp 387 (2469)
+-+-.+|-++..
T Consensus 1924 ~~~p~s~~a~~~ 1935 (2220)
T KOG3598|consen 1924 AAAPTSWNAPIA 1935 (2220)
T ss_pred hcCCccccccch
Confidence 344555655543
No 109
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=56.25 E-value=1.6e+02 Score=36.62 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=6.7
Q ss_pred hhhcccccCCCCC
Q 000063 270 QVRKQEEYFPGPL 282 (2469)
Q Consensus 270 ~~rk~~~~~~gpl 282 (2469)
.+|-..+||-|-+
T Consensus 15 ~~~~~~~~f~~~~ 27 (379)
T COG5269 15 LARIHSEYFKGRN 27 (379)
T ss_pred ccChHHHHhcchh
Confidence 3444555666544
No 110
>PLN03188 kinesin-12 family protein; Provisional
Probab=55.50 E-value=3.2e+02 Score=39.90 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=5.7
Q ss_pred CccccCCCCCCC
Q 000063 70 PKLSVPPPLNLP 81 (2469)
Q Consensus 70 ~klsvp~PlnlP 81 (2469)
+||-.|-|.+.|
T Consensus 65 ~~~~sp~p~~pp 76 (1320)
T PLN03188 65 AKLKSPLPPRPP 76 (1320)
T ss_pred ccccCCCCCCCC
Confidence 444444444444
No 111
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=54.79 E-value=4.8e+02 Score=34.30 Aligned_cols=8 Identities=38% Similarity=0.119 Sum_probs=3.5
Q ss_pred cccccccC
Q 000063 1004 SSLSVSSA 1011 (2469)
Q Consensus 1004 sSLSvssp 1011 (2469)
.+|.++++
T Consensus 354 ~~lLsssR 361 (459)
T KOG0288|consen 354 LELLSSSR 361 (459)
T ss_pred eEEeeecC
Confidence 34444444
No 112
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=53.64 E-value=22 Score=50.55 Aligned_cols=11 Identities=18% Similarity=-0.121 Sum_probs=5.4
Q ss_pred CCCcccCcccc
Q 000063 465 NPWEQYGSEQY 475 (2469)
Q Consensus 465 t~p~~ygi~Qy 475 (2469)
.+|..|++.|.
T Consensus 2032 ~~ps~~~~~q~ 2042 (2220)
T KOG3598|consen 2032 MGPSMSGMNQN 2042 (2220)
T ss_pred cCCcccccccc
Confidence 44445555544
No 113
>COG4499 Predicted membrane protein [Function unknown]
Probab=52.98 E-value=33 Score=43.69 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=14.2
Q ss_pred cchhhhhhhhhhhhcccccCCch
Q 000063 545 AGLVGVVKKKKDVLKQTDFHDPV 567 (2469)
Q Consensus 545 ~~m~alVRKKKEaaKqaE~EdK~ 567 (2469)
.-+++++++.++..--...-...
T Consensus 344 ~~~~Al~k~~eevksn~~lsg~~ 366 (434)
T COG4499 344 LTLLALTKLYEEVKSNTDLSGDK 366 (434)
T ss_pred hHHHHHHHHHHHHhcccCCCchH
Confidence 45778888777765545444333
No 114
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=52.61 E-value=2.2e+02 Score=37.15 Aligned_cols=10 Identities=20% Similarity=0.208 Sum_probs=3.9
Q ss_pred ccCCCCCCCC
Q 000063 531 DFGSSSFDGR 540 (2469)
Q Consensus 531 DfGaSgfdGr 540 (2469)
=||.+-.+++
T Consensus 202 LFGpp~~~~~ 211 (575)
T KOG4403|consen 202 LFGPPYKTNH 211 (575)
T ss_pred EecCCcCCCc
Confidence 3444333333
No 115
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=52.56 E-value=4.4e+02 Score=34.74 Aligned_cols=6 Identities=17% Similarity=0.163 Sum_probs=2.2
Q ss_pred hhhhhh
Q 000063 549 GVVKKK 554 (2469)
Q Consensus 549 alVRKK 554 (2469)
+..+.|
T Consensus 233 ay~Qnk 238 (575)
T KOG4403|consen 233 AYRQNK 238 (575)
T ss_pred hhhhhh
Confidence 333333
No 116
>PRK03918 chromosome segregation protein; Provisional
Probab=52.56 E-value=6e+02 Score=35.14 Aligned_cols=7 Identities=43% Similarity=0.601 Sum_probs=4.5
Q ss_pred ccccccc
Q 000063 349 SETGKVS 355 (2469)
Q Consensus 349 ~e~~k~~ 355 (2469)
|-+||.+
T Consensus 32 nG~GKSt 38 (880)
T PRK03918 32 NGSGKSS 38 (880)
T ss_pred CCCCHHH
Confidence 5677755
No 117
>KOG1425 consensus Microfibrillar-associated protein MFAP1 [Cytoskeleton]
Probab=50.65 E-value=83 Score=39.97 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=6.5
Q ss_pred CccccccCCCCCC
Q 000063 304 ITDRDRDHGFSKS 316 (2469)
Q Consensus 304 ~~~r~rd~gfsk~ 316 (2469)
+.+|-|++-|.+.
T Consensus 51 ~~~~~~~~a~~ee 63 (430)
T KOG1425|consen 51 IKDRKRDRAEPEE 63 (430)
T ss_pred HHHHHHHhcCcch
Confidence 4455555554444
No 118
>PRK07735 NADH dehydrogenase subunit C; Validated
Probab=50.16 E-value=54 Score=42.30 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=4.6
Q ss_pred hhhhhhhhccc
Q 000063 551 VKKKKDVLKQT 561 (2469)
Q Consensus 551 VRKKKEaaKqa 561 (2469)
.+.|+|.+.+.
T Consensus 8 ~~~~~~aa~~a 18 (430)
T PRK07735 8 EDLKKEAARRA 18 (430)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 119
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.01 E-value=4.4e+02 Score=38.30 Aligned_cols=6 Identities=33% Similarity=1.149 Sum_probs=2.7
Q ss_pred cccccc
Q 000063 904 SFGRSR 909 (2469)
Q Consensus 904 sfgR~R 909 (2469)
.||+.|
T Consensus 731 aygk~r 736 (1293)
T KOG0996|consen 731 AYGKDR 736 (1293)
T ss_pred hhcCCC
Confidence 444444
No 120
>COG5281 Phage-related minor tail protein [Function unknown]
Probab=48.54 E-value=3.4e+02 Score=38.17 Aligned_cols=12 Identities=50% Similarity=0.747 Sum_probs=4.9
Q ss_pred cccccccCCCcc
Q 000063 177 KASVLRGEDFPS 188 (2469)
Q Consensus 177 k~~vlrgedfps 188 (2469)
.+.++|+|-|=+
T Consensus 41 ~~~~r~~~~~~~ 52 (833)
T COG5281 41 AQGVRRGEEFNS 52 (833)
T ss_pred HHHHHHHHHHhc
Confidence 333444444433
No 121
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=47.45 E-value=6.8e+02 Score=36.76 Aligned_cols=10 Identities=40% Similarity=0.896 Sum_probs=3.9
Q ss_pred CCCCCceeec
Q 000063 1291 PSPFPAIQIG 1300 (2469)
Q Consensus 1291 pspvPAIQIG 1300 (2469)
|.-++..+++
T Consensus 1192 ~~~f~~l~l~ 1201 (1317)
T KOG0612|consen 1192 PSEFSYLSLG 1201 (1317)
T ss_pred ccccchhhcc
Confidence 3333444433
No 122
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=47.37 E-value=2.8e+02 Score=38.33 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=5.5
Q ss_pred CCCCcccCCCCce
Q 000063 1493 KAQGLTSGSRGKR 1505 (2469)
Q Consensus 1493 k~~g~~sg~rgr~ 1505 (2469)
++-+++.-|+-||
T Consensus 823 eF~nLi~~gtdrr 835 (916)
T KOG0249|consen 823 EFNNLLALGTDRR 835 (916)
T ss_pred HHHhhhccccccc
Confidence 3344444444433
No 123
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.14 E-value=6.1e+02 Score=35.05 Aligned_cols=15 Identities=20% Similarity=0.058 Sum_probs=7.2
Q ss_pred CCCccchhHhhhccc
Q 000063 261 DTGSARRSEQVRKQE 275 (2469)
Q Consensus 261 ~~g~~~~~e~~rk~~ 275 (2469)
.+|-.|.-=-.||+-
T Consensus 210 SLGITCIELAERkPP 224 (948)
T KOG0577|consen 210 SLGITCIELAERKPP 224 (948)
T ss_pred eccchhhhhhhcCCC
Confidence 345555444445543
No 124
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=47.00 E-value=8e+02 Score=34.20 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=6.3
Q ss_pred ccccchhhhccccc
Q 000063 1078 AVENDERLHEQEEY 1091 (2469)
Q Consensus 1078 ~~~~~e~~~eqeey 1091 (2469)
+.++++...++++|
T Consensus 893 T~e~e~l~ek~~~~ 906 (961)
T KOG4673|consen 893 TAECEKLREKADRV 906 (961)
T ss_pred HHHHHHHHHHHHhh
Confidence 33444444444444
No 125
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=46.22 E-value=8e+02 Score=35.70 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=15.7
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 000063 431 VQDDSGRRDIDYGPGGRQPWNNSVHSFNSQRAE 463 (2469)
Q Consensus 431 s~dstGGRDS~yg~~g~QPwn~~VSSwg~K~~E 463 (2469)
+-....+++-.++....+++..-+...-...++
T Consensus 553 vvs~~~~~~y~~~~~p~~~~pTil~~le~ddp~ 585 (1074)
T KOG0250|consen 553 VVSSFTPFDYSVGRNPGYEFPTILDALEFDDPE 585 (1074)
T ss_pred EEecCCccccccccCCCCCCCceeeeeecCChH
Confidence 333455566555655555444444443333333
No 126
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.57 E-value=8.4e+02 Score=33.86 Aligned_cols=18 Identities=28% Similarity=0.076 Sum_probs=9.3
Q ss_pred ccccccccchhhhccccc
Q 000063 1074 DEEWAVENDERLHEQEEY 1091 (2469)
Q Consensus 1074 d~ew~~~~~e~~~eqeey 1091 (2469)
.|||-...-..+.+|-||
T Consensus 815 lde~qe~E~q~l~~ql~q 832 (948)
T KOG0577|consen 815 LDEAQEAECQVLREQLEQ 832 (948)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 455554444445555555
No 127
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=44.00 E-value=3.3e+02 Score=32.22 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=5.7
Q ss_pred CCcccccCCCCC
Q 000063 746 MSSRNQFARDNS 757 (2469)
Q Consensus 746 mg~RvhTSRd~s 757 (2469)
+|--+-.++|+.
T Consensus 154 ~GGvvv~~~dG~ 165 (194)
T COG1390 154 IGGVVVESRDGK 165 (194)
T ss_pred cceEEEEeCCCc
Confidence 444444555554
No 128
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=43.71 E-value=7.8e+02 Score=35.78 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=12.4
Q ss_pred CccccCCCcccccccc
Q 000063 404 GICERPSSLNREANKE 419 (2469)
Q Consensus 404 Gig~RPsSRnRGaSk~ 419 (2469)
|||.|++.-+||.+-.
T Consensus 85 glG~rAs~tnRgsslK 100 (1074)
T KOG0250|consen 85 GLGGRASATNRGSSLK 100 (1074)
T ss_pred hhccccccccchhhHH
Confidence 6777998899987643
No 129
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=43.04 E-value=8.5e+02 Score=34.07 Aligned_cols=8 Identities=38% Similarity=1.149 Sum_probs=3.9
Q ss_pred Cccccccc
Q 000063 768 NSWRRDAF 775 (2469)
Q Consensus 768 ~SWaR~~f 775 (2469)
..|+.-.|
T Consensus 309 ~~WREKVF 316 (739)
T PF07111_consen 309 SRWREKVF 316 (739)
T ss_pred HHHHHHHH
Confidence 44655433
No 130
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.82 E-value=63 Score=40.52 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=4.4
Q ss_pred ccCCCCCCCCC
Q 000063 911 SMRHPRVLPPP 921 (2469)
Q Consensus 911 smRqPRVlPPP 921 (2469)
-|.-||-.+-|
T Consensus 405 A~~n~~~anKp 415 (469)
T KOG3878|consen 405 AVNNPTAANKP 415 (469)
T ss_pred hhcCCCCCCCC
Confidence 34444443333
No 131
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=42.68 E-value=6.9e+02 Score=35.25 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=9.3
Q ss_pred CCCCccccceeee
Q 000063 1534 PRRPRRQRTEFRV 1546 (2469)
Q Consensus 1534 ~R~~~~~rtefrv 1546 (2469)
.++.+--|||||-
T Consensus 1197 ~~tvlaeRt~l~c 1209 (1265)
T KOG0976|consen 1197 PHTVLAERTELRC 1209 (1265)
T ss_pred chhhhhhhhheee
Confidence 3457778899874
No 132
>PF15359 CDV3: Carnitine deficiency-associated protein 3
Probab=41.61 E-value=64 Score=36.01 Aligned_cols=62 Identities=29% Similarity=0.443 Sum_probs=33.6
Q ss_pred CCCCCCccccccccccCcccCCCCccCCCCCCCCCcccccCCCCccCCC-CCCccCCCccccccccc-cCCCccccccc
Q 000063 117 GWTKPGTAVGSDQKINDKVDQGPHSVDGLSKGNDGVGVYVPPSVRSGTV-GPALSSFAPAEKASVLR-GEDFPSLQAAL 193 (2469)
Q Consensus 117 gwtkp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~ek~~vlr-gedfpsl~a~l 193 (2469)
=|.|++++.......- +... --...++|||.||.+|-... -....+ |==|- =+-||||+||.
T Consensus 60 PWnk~~~~~~~~~~~~--v~~~-------~~p~~~~gvY~PP~~R~~~~~r~~~qg------aPdI~Se~~FPSL~sta 123 (129)
T PF15359_consen 60 PWNKSAPAQAPPAPAP--VEEP-------PEPATTSGVYRPPAARNTTTKRKRPQG------APDIFSEEQFPSLQSTA 123 (129)
T ss_pred CCcCCCCCCCCCCCCc--cCCC-------CCCCCCCceecCcccccccccCCCCCC------CCCccccccccchHHHh
Confidence 6999887544444432 1111 11356789999999993321 111111 11111 24799999874
No 133
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=41.52 E-value=4.5e+02 Score=34.66 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=14.9
Q ss_pred ccccc--hhhhhcccccCccccCCCC
Q 000063 827 GILEP--HMDEFTVSRGQRWNMSGDG 850 (2469)
Q Consensus 827 G~tD~--~LeDYr~~~p~rWnipGDg 850 (2469)
.|+|- .+.|+-..+...+++|=+.
T Consensus 373 afLd~L~qf~~e~~~k~~~~~lPy~i 398 (447)
T KOG2751|consen 373 AFLDCLKQFADELEKKDTSFNLPYDI 398 (447)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcchh
Confidence 34444 4566777777777776543
No 134
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=40.82 E-value=87 Score=41.28 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=4.9
Q ss_pred CCCCCCCCCCc
Q 000063 533 GSSSFDGRDPF 543 (2469)
Q Consensus 533 GaSgfdGrDP~ 543 (2469)
+.++|.-++|.
T Consensus 325 r~~PFttkRPt 335 (591)
T KOG2505|consen 325 RTFPFTTKRPT 335 (591)
T ss_pred cccCCCCCCCc
Confidence 33444444444
No 135
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=39.75 E-value=1.2e+02 Score=40.04 Aligned_cols=8 Identities=50% Similarity=0.700 Sum_probs=4.2
Q ss_pred ccCCCCCC
Q 000063 309 RDHGFSKS 316 (2469)
Q Consensus 309 rd~gfsk~ 316 (2469)
=|-||-+.
T Consensus 170 ldmgFe~~ 177 (567)
T KOG0345|consen 170 LDMGFEAS 177 (567)
T ss_pred hcccHHHH
Confidence 35566444
No 136
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=39.52 E-value=65 Score=43.94 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=18.4
Q ss_pred CcccccCCCCccCCCCCCccC--CCccccccccc
Q 000063 151 GVGVYVPPSVRSGTVGPALSS--FAPAEKASVLR 182 (2469)
Q Consensus 151 ~~~~~~~~s~~~~~~~~~~~~--~~~~ek~~vlr 182 (2469)
..-|..|.|+.|-+|...... -.....++||.
T Consensus 73 s~~vhApvSG~V~~I~~~~~~h~sg~~~~~ivIe 106 (695)
T PRK05035 73 SLPVHAPTSGTVVAIEPHPTAHPSGLAELCVVIE 106 (695)
T ss_pred eeEEeCCCCeEEeeeccccccCCCCcccceEEEc
Confidence 345667777777777643221 23445567776
No 137
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=36.65 E-value=1.5e+03 Score=32.27 Aligned_cols=7 Identities=43% Similarity=0.558 Sum_probs=3.9
Q ss_pred ccccccc
Q 000063 349 SETGKVS 355 (2469)
Q Consensus 349 ~e~~k~~ 355 (2469)
|=+||.+
T Consensus 34 nGsGKSS 40 (908)
T COG0419 34 NGAGKSS 40 (908)
T ss_pred CCCcHHH
Confidence 4556654
No 138
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=36.48 E-value=5.4e+02 Score=35.99 Aligned_cols=10 Identities=20% Similarity=-0.004 Sum_probs=4.7
Q ss_pred ccCCCCCCCC
Q 000063 751 QFARDNSSGF 760 (2469)
Q Consensus 751 hTSRd~sSSf 760 (2469)
+|+|+..++.
T Consensus 672 ~t~rt~~~~~ 681 (809)
T KOG0247|consen 672 TTSRTVMSSS 681 (809)
T ss_pred hhhhhhhcCC
Confidence 4555444444
No 139
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=35.59 E-value=1.5e+02 Score=39.29 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=6.0
Q ss_pred cCCCCCCccccccc
Q 000063 374 REGREGNMWRASSS 387 (2469)
Q Consensus 374 reg~e~nsWR~ssp 387 (2469)
|-||+||+-.+.-|
T Consensus 350 R~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 350 RAGREGNAIVFLNP 363 (567)
T ss_pred hccCccceEEEecc
Confidence 33444444444433
No 140
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=34.62 E-value=1.3e+03 Score=31.18 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=10.4
Q ss_pred CCCCcccchhhhhhhhhh
Q 000063 539 GRDPFSAGLVGVVKKKKD 556 (2469)
Q Consensus 539 GrDP~t~~m~alVRKKKE 556 (2469)
-.||++++-.....|=+|
T Consensus 78 ~pDPLsPgE~~l~~Kl~e 95 (508)
T PF00901_consen 78 PPDPLSPGEQGLQRKLKE 95 (508)
T ss_pred CCCCCCHhHHHHHHHHHH
Confidence 578887666554444333
No 141
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=33.72 E-value=1.6e+02 Score=39.46 Aligned_cols=7 Identities=14% Similarity=0.226 Sum_probs=3.3
Q ss_pred ccccccC
Q 000063 85 KEHERFD 91 (2469)
Q Consensus 85 keHe~~d 91 (2469)
++-|+|+
T Consensus 10 ~~~~~~~ 16 (563)
T KOG2341|consen 10 ETDEGVS 16 (563)
T ss_pred ccccccc
Confidence 3444444
No 142
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.71 E-value=8.3e+02 Score=31.47 Aligned_cols=8 Identities=25% Similarity=0.331 Sum_probs=3.5
Q ss_pred cCCCCCCC
Q 000063 809 KEFYGGPG 816 (2469)
Q Consensus 809 K~f~gG~G 816 (2469)
|++-=|+|
T Consensus 352 D~YDIGFG 359 (469)
T KOG3878|consen 352 DSYDIGFG 359 (469)
T ss_pred ccccccce
Confidence 33334555
No 143
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=31.27 E-value=78 Score=40.01 Aligned_cols=57 Identities=32% Similarity=0.646 Sum_probs=36.6
Q ss_pred ccccCCCCCCCcccccccccCCCCCCCCC-----------------C----------CCCCCCCCCCCCCCCCCCCCCCc
Q 000063 71 KLSVPPPLNLPSLRKEHERFDSSGSNGGP-----------------A----------GGGVSGAGQRPGSSGTGWTKPGT 123 (2469)
Q Consensus 71 klsvp~PlnlPSlrkeHe~~ds~g~~~g~-----------------~----------~~~~~g~g~rp~ssg~gwtkp~~ 123 (2469)
.-.||||-..||.++...-||--|+-||. . ||-|+|-|.+-...|.||-+|+.
T Consensus 310 nE~~ppppempswqqqq~~~~~~ggrgggkg~f~~~~~~~~~~~eqgg~Rgg~Gg~~gGrGgGRGggG~GGGggyqqp~~ 389 (465)
T KOG3973|consen 310 NEMVPPPPEMPSWQQQQHTFDRQGGRGGGKGTFDRPKTHEEQVLEQGGSRGGSGGNWGGRGGGRGGGGRGGGGGYQQPQQ 389 (465)
T ss_pred ccCCCCCCCCCcHHHhcCCCCCCCCcCCCCCCCcCccccccchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCchh
Confidence 34589999999999988888866654333 0 11122333344556689998876
Q ss_pred cccc
Q 000063 124 AVGS 127 (2469)
Q Consensus 124 ~~~~ 127 (2469)
--.+
T Consensus 390 ~~~~ 393 (465)
T KOG3973|consen 390 QQQQ 393 (465)
T ss_pred hhhc
Confidence 5544
No 144
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=29.91 E-value=8.7e+02 Score=34.15 Aligned_cols=8 Identities=13% Similarity=0.468 Sum_probs=3.2
Q ss_pred cccccccc
Q 000063 352 GKVSSSEV 359 (2469)
Q Consensus 352 ~k~~~~e~ 359 (2469)
++|..|++
T Consensus 326 ~~i~vSql 333 (809)
T KOG0247|consen 326 NQITVSQL 333 (809)
T ss_pred CceeEEee
Confidence 33444444
No 145
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=29.58 E-value=1.7e+03 Score=32.38 Aligned_cols=14 Identities=14% Similarity=0.036 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCCC
Q 000063 880 RYRGNVHPPYPDRI 893 (2469)
Q Consensus 880 ~s~g~p~PP~~~R~ 893 (2469)
-..|-|||-|+-..
T Consensus 500 L~~GePCPVCGS~~ 513 (1047)
T PRK10246 500 LQAGQPCPLCGSTS 513 (1047)
T ss_pred CCCCCCcCCCCccc
Confidence 34468898887654
No 146
>KOG2823 consensus Cellular protein (glioma tumor suppressor candidate region gene 2) [General function prediction only]
Probab=28.91 E-value=2.2e+02 Score=37.14 Aligned_cols=11 Identities=27% Similarity=0.634 Sum_probs=4.7
Q ss_pred CCCCCCCCccc
Q 000063 331 VLPHKPAHNVF 341 (2469)
Q Consensus 331 ~~p~k~~~~~~ 341 (2469)
.|-+++--.||
T Consensus 47 ~ls~~pnEdLF 57 (438)
T KOG2823|consen 47 NLSEAPNEDLF 57 (438)
T ss_pred chhcCCccceE
Confidence 34444444444
No 147
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=28.32 E-value=3.6e+02 Score=34.26 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=6.0
Q ss_pred CCCCCeeeccCC
Q 000063 279 PGPLPLVRLKPR 290 (2469)
Q Consensus 279 ~gplplvrl~~~ 290 (2469)
-|+-|+-||++-
T Consensus 25 ~g~~~~~h~~y~ 36 (410)
T KOG4715|consen 25 GGYNPYTHLAYS 36 (410)
T ss_pred CCCCcchhhhcc
Confidence 344455555543
No 148
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=28.13 E-value=1.5e+03 Score=33.45 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=10.7
Q ss_pred cccceeEeeecCCccCCC
Q 000063 1656 LQSGVVRVFEQPGIEAPS 1673 (2469)
Q Consensus 1656 lqsg~vrvf~q~Gie~ps 1673 (2469)
+--.|.+.|++.|||.|-
T Consensus 1061 l~~~I~~~F~~~GIeIPf 1078 (1109)
T PRK10929 1061 IHQLILAGFREHGIDMPF 1078 (1109)
T ss_pred HHHHHHHHHHHCCCcCCC
Confidence 333556666667776664
No 149
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=27.96 E-value=2.6e+02 Score=37.51 Aligned_cols=6 Identities=33% Similarity=0.540 Sum_probs=2.5
Q ss_pred CCCCCc
Q 000063 510 SRDKRP 515 (2469)
Q Consensus 510 gReKR~ 515 (2469)
||.+|+
T Consensus 515 GRTARA 520 (691)
T KOG0338|consen 515 GRTARA 520 (691)
T ss_pred hhhhhc
Confidence 444443
No 150
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=27.48 E-value=20 Score=46.79 Aligned_cols=8 Identities=25% Similarity=-0.055 Sum_probs=0.0
Q ss_pred CCcccccc
Q 000063 379 GNMWRASS 386 (2469)
Q Consensus 379 ~nsWR~ss 386 (2469)
.+.||.++
T Consensus 236 ~~s~rqlS 243 (495)
T PF12004_consen 236 DFSRRQLS 243 (495)
T ss_dssp --------
T ss_pred chhhhhcc
Confidence 44555555
No 151
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=27.34 E-value=1.7e+03 Score=30.07 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=5.4
Q ss_pred CCCCCccccc
Q 000063 376 GREGNMWRAS 385 (2469)
Q Consensus 376 g~e~nsWR~s 385 (2469)
|...|+|-..
T Consensus 235 ~~~~~Lwicl 244 (493)
T KOG0804|consen 235 GCTEDLWICL 244 (493)
T ss_pred cccccEEEEE
Confidence 4455666544
No 152
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=27.07 E-value=43 Score=42.08 Aligned_cols=20 Identities=45% Similarity=0.790 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCCCCCCce
Q 000063 36 HSGYYGSNRARPTGGGGGGM 55 (2469)
Q Consensus 36 ~~g~~~~~~~~~~~~~gggm 55 (2469)
+||+.|..+|.+||||+||+
T Consensus 441 gggr~gggrgrgggggrg~y 460 (465)
T KOG3973|consen 441 GGGRDGGGRGRGGGGGRGGY 460 (465)
T ss_pred CCCCCCCCCCCCCCCCCccc
Confidence 44444444444455555553
No 153
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=27.02 E-value=6.7e+02 Score=29.12 Aligned_cols=21 Identities=14% Similarity=0.368 Sum_probs=10.2
Q ss_pred ccccCCCCCCCCCCcccchhh
Q 000063 529 MKDFGSSSFDGRDPFSAGLVG 549 (2469)
Q Consensus 529 ~dDfGaSgfdGrDP~t~~m~a 549 (2469)
++.||.....|=.|....++.
T Consensus 16 Id~~G~e~v~~LmP~VV~vLE 36 (158)
T PF09744_consen 16 IDRYGEEAVKGLMPKVVRVLE 36 (158)
T ss_pred HHHhChhHHHHHHHHHHHHHH
Confidence 345555555455555444333
No 154
>PF10252 PP28: Casein kinase substrate phosphoprotein PP28; InterPro: IPR019380 This domain is a region of 70 residues conserved in proteins from plants to humans and contains a serine/arginine rich motif. In rats the full protein is a casein kinase substrate, and this region contains phosphorylation sites for both cAMP-dependent protein kinase and casein kinase II [].
Probab=26.83 E-value=1.9e+02 Score=30.51 Aligned_cols=59 Identities=24% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000063 598 ELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQR 656 (2469)
Q Consensus 598 EEeRKEEEEReReaREEEERRRReEEEEREeEeeEEKEReEAeRKEEEERrRREEEErR 656 (2469)
+.-++++|+.++++..+.=.+...+-.-.+.....++.++-++++++...++.++.+.+
T Consensus 24 ~lSRRERE~iekq~A~erY~klh~~GKT~eakaDLaRLAlIRkqREeaA~kR~aek~ak 82 (82)
T PF10252_consen 24 ELSRREREEIEKQRARERYMKLHAEGKTDEAKADLARLALIRKQREEAAAKREAEKEAK 82 (82)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
No 155
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.77 E-value=42 Score=46.23 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=12.4
Q ss_pred cCCCCCcccccchhhhhcccccccc
Q 000063 1101 EDVPEGDDENIELTQEFEGIHLEEK 1125 (2469)
Q Consensus 1101 edei~~~deni~l~~e~~~~hl~~k 1125 (2469)
+|-..+.++-+++.++.-+.-++|.
T Consensus 1426 dd~D~dd~~e~~~~D~~d~~~s~eD 1450 (1516)
T KOG1832|consen 1426 DDLDRDDGLEGDNSDSGDDDLSSED 1450 (1516)
T ss_pred cccccccchhccccccccccccccc
Confidence 3333333556666666555444443
No 156
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=26.59 E-value=1.7e+03 Score=30.01 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=4.0
Q ss_pred ccccccccc
Q 000063 722 GERMVERIT 730 (2469)
Q Consensus 722 ~ERmvERIt 730 (2469)
.|-..++|.
T Consensus 206 GE~qLerIL 214 (475)
T PRK10361 206 GEVVLTRVL 214 (475)
T ss_pred HHHHHHHHH
Confidence 344444444
No 157
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.14 E-value=2.3e+03 Score=31.21 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=20.7
Q ss_pred cccCCCCCCcccccCCCCCCCCCCCCCCCCCccccccCc-CCcccc
Q 000063 308 DRDHGFSKSEAYWEGDFDMPRPSVLPHKPAHNVFERWGQ-RDSETG 352 (2469)
Q Consensus 308 ~rd~gfsk~e~~w~~~fd~p~~~~~p~k~~~~~~~~~g~-r~~e~~ 352 (2469)
|+..|--+.--|++- .+++.+|-|.-| |.-|.+
T Consensus 46 GKNnGsVqg~qYF~C------------d~ncG~FVr~sq~r~lEda 79 (1243)
T KOG0971|consen 46 GKNNGSVQGVQYFEC------------DENCGVFVRSSQVRELEDA 79 (1243)
T ss_pred CCCCCcccceeeEec------------CCCcceEeehhhhHHhhcc
Confidence 466666666667543 246678887777 666654
No 158
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.78 E-value=1.4e+02 Score=40.71 Aligned_cols=8 Identities=38% Similarity=0.526 Sum_probs=3.3
Q ss_pred CCCCCcee
Q 000063 1291 PSPFPAIQ 1298 (2469)
Q Consensus 1291 pspvPAIQ 1298 (2469)
..+||-||
T Consensus 614 ~~t~PEIq 621 (902)
T KOG0923|consen 614 EMTVPEIQ 621 (902)
T ss_pred cCCCccee
Confidence 33444444
No 159
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=25.60 E-value=1.8e+03 Score=29.86 Aligned_cols=6 Identities=0% Similarity=0.257 Sum_probs=2.6
Q ss_pred hhhhhc
Q 000063 832 HMDEFT 837 (2469)
Q Consensus 832 ~LeDYr 837 (2469)
.|..|.
T Consensus 260 pL~aY~ 265 (475)
T PRK10361 260 TLVAYE 265 (475)
T ss_pred CHHHHH
Confidence 344444
No 160
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=25.58 E-value=1.9e+02 Score=40.17 Aligned_cols=89 Identities=36% Similarity=0.567 Sum_probs=0.0
Q ss_pred cccCcccccCCCcccCCCCC----CCCCCccccccCCCCCCCCCCccccCccCCCCccccCCCCCCcccccccccCCCCC
Q 000063 2039 ALPADLSVETPPISLWPPLP----SPPSSNQMISHFPGGLPSHFPLYEMNPLLGGPIFTFGPHEESVPAQSQTQKTASTP 2114 (2469)
Q Consensus 2039 aLPADLSVdtp~is~w~~lp----spq~s~~m~s~~p~~~~~~f~~~emn~mlgg~~fafgp~~e~~~~q~~~q~s~~~~ 2114 (2469)
.||+|--+=.| |||| .++..-+-..-+||+.+..=|-==|-+|.|||.-|=
T Consensus 520 ~~~~~~~iP~P-----P~~pp~gG~g~pppPppPPlpggag~PPPPpplPg~aG~PPpPp-------------------- 574 (1102)
T KOG1924|consen 520 LLPIDGGIPPP-----PPLPPTGGTGPPPPPPPPPLPGGAGPPPPPPPLPGIAGGPPPPP-------------------- 574 (1102)
T ss_pred CCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCCccC--------------------
Q ss_pred CCCCCCCccccccCcccccCCCCCCCCCccCCC-CCCCCCCCCCcEEEcccCccCcccc
Q 000063 2115 GSSSLGTWQQCHSGVDSFYGPPAGYTGPFISPT-GGIPGVQGPPHMVVYNHFAPVGQFG 2172 (2469)
Q Consensus 2115 ~s~p~g~w~q~hsgvdsfy~pp~gf~gpfi~p~-g~ipgvqgpphm~vynhfapvgqfg 2172 (2469)
||-||.||---|| ||.+|-+-||--.-.=+-|||=-||
T Consensus 575 --------------------pppg~~gppPPPpp~g~~Gg~ppPP~~gm~pmaPvlP~g 613 (1102)
T KOG1924|consen 575 --------------------PPPGGGGPPPPPPPGGFLGGPPPPPPPGMFPMAPVLPFG 613 (1102)
T ss_pred --------------------CCCCCCCCCCcCCCCCCCCCCCCCCCCCcccccccCCCC
No 161
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=25.39 E-value=8.5e+02 Score=26.02 Aligned_cols=101 Identities=22% Similarity=0.327 Sum_probs=0.0
Q ss_pred hhhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000063 550 VVKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALE----LARREEEERLRVAREQEEQRRRLEEET 625 (2469)
Q Consensus 550 lVRKKKEaaKqaE~EdK~REEeEAELERRqEeEEEERqReEEEQEREeE----EeRKEEEEReReaREEEERRRReEEEE 625 (2469)
++.++++.......-+..+++.+...+......++.+.+..+-++.... ...-.........+..++.+.+.+...
T Consensus 2 li~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 2 LIEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000063 626 REAVWRAEQEQLEATRKAEEQRIAR 650 (2469)
Q Consensus 626 REeEeeEEKEReEAeRKEEEERrRR 650 (2469)
..+.-..+-..+.......+++...
T Consensus 82 ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 162
>COG4499 Predicted membrane protein [Function unknown]
Probab=24.71 E-value=1.2e+02 Score=38.98 Aligned_cols=10 Identities=30% Similarity=0.644 Sum_probs=5.4
Q ss_pred CCCCCCCCCC
Q 000063 324 FDMPRPSVLP 333 (2469)
Q Consensus 324 fd~p~~~~~p 333 (2469)
|-||+.++=+
T Consensus 27 ~tf~ke~ik~ 36 (434)
T COG4499 27 FTFPKESIKL 36 (434)
T ss_pred EEeecccccH
Confidence 4456555544
No 163
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.36 E-value=2.6e+03 Score=31.29 Aligned_cols=15 Identities=20% Similarity=0.051 Sum_probs=9.8
Q ss_pred CccccccccccCCCc
Q 000063 173 APAEKASVLRGEDFP 187 (2469)
Q Consensus 173 ~~~ek~~vlrgedfp 187 (2469)
.....++.+.=+||.
T Consensus 148 ~~f~~vi~~~Qge~~ 162 (1311)
T TIGR00606 148 AVLNNVIFCHQEDSN 162 (1311)
T ss_pred HHHhhceeeCCcccc
Confidence 455666777777774
No 164
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=24.12 E-value=2.3e+02 Score=39.02 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=5.2
Q ss_pred ccchhhhhhhhh
Q 000063 544 SAGLVGVVKKKK 555 (2469)
Q Consensus 544 t~~m~alVRKKK 555 (2469)
.+.+...++.-+
T Consensus 424 ~Iplv~~~r~aK 435 (695)
T PRK05035 424 NIPLVQYYRQAK 435 (695)
T ss_pred CCcHHHHHHHHH
Confidence 344444444433
No 165
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=23.78 E-value=2.1e+03 Score=31.68 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCC
Q 000063 500 FPHNDPMHNFSRD 512 (2469)
Q Consensus 500 ll~NDPllNFgRe 512 (2469)
+|+.|-...|.+=
T Consensus 146 FLpQDkV~EFa~L 158 (1072)
T KOG0979|consen 146 FLPQDKVKEFARL 158 (1072)
T ss_pred hccHHHHHHHHcC
Confidence 4556666666554
No 166
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.37 E-value=2e+03 Score=29.73 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=11.2
Q ss_pred ccccccccccccccCCCCCc
Q 000063 349 SETGKVSSSEVARVDPFGRD 368 (2469)
Q Consensus 349 ~e~~k~~~~e~~~~~~~~~d 368 (2469)
|.+||.+--.-...==||+.
T Consensus 37 Ng~GKttll~ai~~~LyG~~ 56 (650)
T TIGR03185 37 NGAGKTTLLDAIQLALYGKR 56 (650)
T ss_pred CCCCHHHHHHHHHHHhcCcc
Confidence 77888764444333345554
No 167
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=23.20 E-value=2.2e+02 Score=36.44 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=4.2
Q ss_pred ccCCCccccc
Q 000063 407 ERPSSLNREA 416 (2469)
Q Consensus 407 ~RPsSRnRGa 416 (2469)
++|.+.+|..
T Consensus 199 vvpVGisR~v 208 (405)
T KOG2963|consen 199 VVPVGISRNV 208 (405)
T ss_pred EEecccchHH
Confidence 3444444433
No 168
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=23.00 E-value=2.4e+02 Score=35.68 Aligned_cols=6 Identities=33% Similarity=0.645 Sum_probs=2.4
Q ss_pred ccccCC
Q 000063 482 AFQRSS 487 (2469)
Q Consensus 482 sfQnsS 487 (2469)
+|||+.
T Consensus 131 ayh~sp 136 (410)
T KOG4715|consen 131 AYHNSP 136 (410)
T ss_pred HhhCCc
Confidence 344433
No 169
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.73 E-value=4.9e+02 Score=31.60 Aligned_cols=65 Identities=11% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000063 623 EETREAVWRAEQEQLEATRKAEEQRIAREE-ERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAA 687 (2469)
Q Consensus 623 EEEREeEeeEEKEReEAeRKEEEERrRREE-EErRREEEEERRREEEEERRrEEEERqKKeQaEeE 687 (2469)
+-+.-++|++++..+-.++-+.++++++|- ++++++.++==++..+..++.....+.+++....+
T Consensus 104 epE~IRkWkeeQ~~rl~ekD~~sek~k~ElrekAkKelddwy~~~~ek~~k~~~~nk~eee~~~~e 169 (216)
T KOG4031|consen 104 EPEKIRKWKEEQMKRLQEKDEASEKLKEELREKAKKELDDWYDQQNEKLEKTKANNKAEEEALVKE 169 (216)
T ss_pred ChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
No 170
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=22.43 E-value=1.7e+03 Score=32.40 Aligned_cols=7 Identities=29% Similarity=0.601 Sum_probs=4.1
Q ss_pred ccccccc
Q 000063 349 SETGKVS 355 (2469)
Q Consensus 349 ~e~~k~~ 355 (2469)
|-+||.+
T Consensus 39 tGaGKSt 45 (1047)
T PRK10246 39 TGAGKTT 45 (1047)
T ss_pred CCCCHHH
Confidence 5566654
No 171
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=22.27 E-value=3.8e+02 Score=36.97 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=27.4
Q ss_pred cccCCCCCcccccchhhhhcc--ccccccCCCccccceecccccceeecC
Q 000063 1099 QEEDVPEGDDENIELTQEFEG--IHLEEKGSPHMMSNLVLGFNEGVEVPM 1146 (2469)
Q Consensus 1099 ~~edei~~~deni~l~~e~~~--~hl~~k~~p~~~~~~vlgf~egvev~m 1146 (2469)
.+.+-|.++=..=|...||+. .-+.++.-|..+|..+-|.-.=+=.+|
T Consensus 584 ~q~~li~~AFA~DdV~~eF~~eK~~~~e~e~pk~~~~~LPGWG~W~G~g~ 633 (735)
T PF04615_consen 584 EQRELIREAFAGDDVVAEFEKEKEEEIEEEKPKEIDLTLPGWGSWAGPGI 633 (735)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhhhCCcccccCCCCcccccCCCc
Confidence 345556666233355677764 223355668788887788765333333
No 172
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=21.86 E-value=5.3e+02 Score=37.63 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=6.9
Q ss_pred ehhhHHhHhh
Q 000063 1842 MTFTQTQLDE 1851 (2469)
Q Consensus 1842 m~lTQtQL~E 1851 (2469)
-.||-.+|.|
T Consensus 986 ~~lt~~~l~~ 995 (1123)
T PRK11448 986 RDLTRKELKE 995 (1123)
T ss_pred ccCCHHHHHH
Confidence 4677777766
No 173
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.72 E-value=1.2e+03 Score=26.53 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred chhhhhhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000063 546 GLVGVVKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEET 625 (2469)
Q Consensus 546 ~m~alVRKKKEaaKqaE~EdK~REEeEAELERRqEeEEEERqReEEEQEREeEEeRKEEEEReReaREEEERRRReEEEE 625 (2469)
++.....+......+.+..+. .+.+.+....++.-.+-.++..+.+++..+....-...+.......+..+...++-.
T Consensus 56 g~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 133 (191)
T PF04156_consen 56 GLLCLLSKRPVQSVRPQQIEE--PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLD 133 (191)
T ss_pred HHHHHHHccccccchHHHHHh--hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000063 626 REAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKR 682 (2469)
Q Consensus 626 REeEeeEEKEReEAeRKEEEERrRREEEErRREEEEERRREEEEERRrEEEERqKKe 682 (2469)
.-+...++..++-++-+.+..+.+++.++.+...++.+.....-++.....++..++
T Consensus 134 ~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 190 (191)
T PF04156_consen 134 SLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELLEQ 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 174
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=21.28 E-value=8.5e+02 Score=33.74 Aligned_cols=7 Identities=29% Similarity=0.615 Sum_probs=2.9
Q ss_pred cceeccc
Q 000063 1132 SNLVLGF 1138 (2469)
Q Consensus 1132 ~~~vlgf 1138 (2469)
|.||-=|
T Consensus 596 DdV~~eF 602 (735)
T PF04615_consen 596 DDVVAEF 602 (735)
T ss_pred CchHHHH
Confidence 4444333
No 175
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.05 E-value=2.4e+03 Score=31.20 Aligned_cols=7 Identities=43% Similarity=0.828 Sum_probs=2.8
Q ss_pred cCCCccc
Q 000063 408 RPSSLNR 414 (2469)
Q Consensus 408 RPsSRnR 414 (2469)
-|-..+|
T Consensus 69 ~Pk~lGR 75 (1072)
T KOG0979|consen 69 KPKLLGR 75 (1072)
T ss_pred Chhhccc
Confidence 4433333
No 176
>KOG2370 consensus Cactin [Signal transduction mechanisms]
Probab=20.95 E-value=5.3e+02 Score=34.40 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=5.9
Q ss_pred Cchhhhccccc
Q 000063 984 STENEEQNLER 994 (2469)
Q Consensus 984 ~a~~E~q~~dr 994 (2469)
+.+.+.|+++|
T Consensus 445 ~~~~~tqr~~R 455 (623)
T KOG2370|consen 445 DSIANTQRLER 455 (623)
T ss_pred HHHHHHHHHHH
Confidence 33455566655
No 177
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=20.75 E-value=1.1e+03 Score=29.30 Aligned_cols=6 Identities=17% Similarity=0.435 Sum_probs=2.8
Q ss_pred CCCccc
Q 000063 745 DMSSRN 750 (2469)
Q Consensus 745 rmg~Rv 750 (2469)
+|+-++
T Consensus 221 ~M~~~p 226 (265)
T PF06409_consen 221 EMGHQP 226 (265)
T ss_pred hhCCCC
Confidence 444444
No 178
>PF07415 Herpes_LMP2: Gammaherpesvirus latent membrane protein (LMP2) protein; InterPro: IPR010881 This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) is a human gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear [].; GO: 0019042 latent virus infection, 0033644 host cell membrane; PDB: 2JO9_B 1UXW_C.
Probab=20.67 E-value=34 Score=43.00 Aligned_cols=41 Identities=34% Similarity=0.563 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC
Q 000063 93 SGSNGGPAGGGVSGAGQRPGSSGTGWTKPGTAVGSDQKIND 133 (2469)
Q Consensus 93 ~g~~~g~~~~~~~g~g~rp~ssg~gwtkp~~~~~~~~~~~~ 133 (2469)
-+++|||-|+-++++-.-|+++|.-|..|+.+..++.+.++
T Consensus 14 p~~~~~~dg~e~~~~~~~ps~~~~~~~~~~~p~~~d~~~~~ 54 (489)
T PF07415_consen 14 PSPHGGPDGYEGSNNSQYPSSFGSSWNSPGPPNYEDYPSNS 54 (489)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccCCCCC
Confidence 35678899999999999999999999999998888877764
No 179
>COG3122 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.44 E-value=4.3e+02 Score=31.46 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000063 606 ERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEE 662 (2469)
Q Consensus 606 EReReaREEEERRRReEEEEREeEeeEEKEReEAeRKEEEERrRREEEErRREEEEE 662 (2469)
++.+.++.+...+-.+.+..+++.++++++.+|+.++--+++++..+.++.+++=++
T Consensus 59 k~~K~qrl~~k~~vd~~eayr~aae~~Kaeqlerdk~l~~qQk~~a~~ke~kAqvkq 115 (215)
T COG3122 59 KRAKVQRLAKKSRVDAREAYRIAAEENKAEQLERDKQLSEQQKQAALAKEYKAQVKQ 115 (215)
T ss_pred hhHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 180
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=20.39 E-value=2.7e+03 Score=30.07 Aligned_cols=14 Identities=36% Similarity=0.389 Sum_probs=7.0
Q ss_pred ccccccccCCccccC
Q 000063 472 SEQYNRFRGDAFQRS 486 (2469)
Q Consensus 472 i~Qygry~G~sfQns 486 (2469)
|+|-| |..+.-+.+
T Consensus 711 ihqin-fdldglaeS 724 (1424)
T KOG4572|consen 711 IHQIN-FDLDGLAES 724 (1424)
T ss_pred hhhhc-ccccccccC
Confidence 34555 555555443
No 181
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=20.24 E-value=1.2e+03 Score=33.90 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=13.0
Q ss_pred Cccccceeeeehhhhhhcccc
Q 000063 1537 PRRQRTEFRVRENADKRQSTA 1557 (2469)
Q Consensus 1537 ~~~~rtefrvre~~~~~q~~~ 1557 (2469)
-+++|.|.-.++.....||..
T Consensus 965 g~r~Rkev~y~d~~te~q~~k 985 (1157)
T KOG0386|consen 965 GRRARKEVVYSDRLTEMQWLK 985 (1157)
T ss_pred cccccceeecccccchhhhhh
Confidence 344666666667666666653
No 182
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.21 E-value=2.1e+03 Score=31.91 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=10.0
Q ss_pred ccccCcCCccCCcccc
Q 000063 1062 MIAPASSISAGDDEEW 1077 (2469)
Q Consensus 1062 ~~~~~s~vs~~~d~ew 1077 (2469)
+|+|.++=+.||+.+.
T Consensus 639 lmsGG~s~~~wdek~~ 654 (1141)
T KOG0018|consen 639 LMSGGSSGAKWDEKEV 654 (1141)
T ss_pred eecCCccCCCcCHHHH
Confidence 6666665566776654
No 183
>PRK13203 ureB urease subunit beta; Reviewed
Probab=20.16 E-value=38 Score=36.49 Aligned_cols=14 Identities=43% Similarity=0.892 Sum_probs=12.5
Q ss_pred CCCCCccccCccCC
Q 000063 2075 PSHFPLYEMNPLLG 2088 (2469)
Q Consensus 2075 ~~~f~~~emn~mlg 2088 (2469)
=|||.|||.|+.|=
T Consensus 37 GSH~HF~E~N~aL~ 50 (102)
T PRK13203 37 GSHYHFFEVNPALS 50 (102)
T ss_pred ccccchhhcCcchh
Confidence 48999999999986
Done!