Query 000063
Match_columns 2469
No_of_seqs 306 out of 1399
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 11:56:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000063.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000063hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ejxb_ b.85.3.1 (B:) Urease, 17.9 17 0.0012 35.3 0.9 13 2076-2088 38-50 (101)
2 d1e9ya1 b.85.3.1 (A:106-238) U 15.4 21 0.0015 36.0 0.9 13 2076-2088 38-50 (133)
3 d4ubpb_ b.85.3.1 (B:) Urease, 14.9 22 0.0016 35.4 0.9 13 2076-2088 40-52 (122)
4 d1k47a2 d.58.26.4 (A:195-329) 7.6 73 0.0053 30.6 1.8 14 48-61 98-111 (135)
5 d1qvra2 c.37.1.20 (A:149-535) 4.2 1.1E+03 0.081 25.8 9.5 110 576-685 253-362 (387)
6 d1v9da_ a.207.1.1 (A:) Diaphan 3.6 5.3E+02 0.038 27.6 5.8 34 608-641 298-331 (332)
7 d1v9da_ a.207.1.1 (A:) Diaphan 3.1 5.6E+02 0.04 27.3 5.3 31 647-677 301-331 (332)
8 d2ap3a1 a.24.27.1 (A:12-196) H 2.8 1.4E+03 0.1 19.7 13.0 153 547-699 31-183 (185)
9 d1oopa_ b.121.4.1 (A:) Swine v 2.7 2.2E+02 0.016 31.1 1.4 22 2162-2183 186-208 (271)
10 d1qvra2 c.37.1.20 (A:149-535) 2.5 1.9E+03 0.14 23.7 9.2 110 583-692 253-362 (387)
No 1
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]}
Probab=17.93 E-value=17 Score=35.27 Aligned_cols=13 Identities=46% Similarity=0.777 Sum_probs=11.8
Q ss_pred CCCCccccCccCC
Q 000063 2076 SHFPLYEMNPLLG 2088 (2469)
Q Consensus 2076 ~~f~~~emn~mlg 2088 (2469)
|||.|||.|+.|=
T Consensus 38 SH~HF~E~N~aL~ 50 (101)
T d1ejxb_ 38 SHYHFAEVNPALK 50 (101)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChHHcCcccc
Confidence 8999999999885
No 2
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]}
Probab=15.39 E-value=21 Score=35.95 Aligned_cols=13 Identities=46% Similarity=0.818 Sum_probs=11.9
Q ss_pred CCCCccccCccCC
Q 000063 2076 SHFPLYEMNPLLG 2088 (2469)
Q Consensus 2076 ~~f~~~emn~mlg 2088 (2469)
|||.|||.|+.|=
T Consensus 38 SH~HF~E~N~aL~ 50 (133)
T d1e9ya1 38 SHFHFFEVNRCLD 50 (133)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChhhcCcccc
Confidence 8999999999985
No 3
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}
Probab=14.87 E-value=22 Score=35.37 Aligned_cols=13 Identities=38% Similarity=0.365 Sum_probs=11.9
Q ss_pred CCCCccccCccCC
Q 000063 2076 SHFPLYEMNPLLG 2088 (2469)
Q Consensus 2076 ~~f~~~emn~mlg 2088 (2469)
|||.|||.|+.|-
T Consensus 40 SH~HF~E~N~aL~ 52 (122)
T d4ubpb_ 40 SHIHFVEVNKELL 52 (122)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChhhcCcccc
Confidence 8999999999985
No 4
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=7.57 E-value=73 Score=30.57 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=0.0
Q ss_pred CCCCCCceEEeecc
Q 000063 48 TGGGGGGMLVLSRP 61 (2469)
Q Consensus 48 ~~~~gggm~vlsr~ 61 (2469)
|+||||+|++|.++
T Consensus 98 GaGgGG~~i~l~~~ 111 (135)
T d1k47a2 98 GAGGGDCGIALSFD 111 (135)
T ss_dssp SSCSSSEEEEEECS
T ss_pred cCcCCCeEEEEecC
No 5
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=4.22 E-value=1.1e+03 Score=25.79 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000063 576 ERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQ 655 (2469)
Q Consensus 576 ERRqEeEEEERqReEEEQEREeEEeRKEEEEReReaREEEERRRReEEEEREeEeeEEKEReEAeRKEEEERrRREEEEr 655 (2469)
++.+..+.+..+-..+.+.-.++......++......+.++.+.....-..+-+.+.+.-....+.+++-+..+.+.+..
T Consensus 253 ~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 253 EEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000063 656 RIIMEEERRKHAAKQKLLELEERIAKRQAE 685 (2469)
Q Consensus 656 RREEEEERRREEEEERRrEEEERqKKeQaE 685 (2469)
.+...-++..+.......+.+++.++..++
T Consensus 333 ~r~gd~e~AaeL~y~~ip~le~el~~l~~~ 362 (387)
T d1qvra2 333 ERQYDLNRAAELRYGELPKLEAEVEALSEK 362 (387)
T ss_dssp TTTTCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHhhchHHHHHHHHHHHHHH
No 6
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.62 E-value=5.3e+02 Score=27.56 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000063 608 LRVAREQEEQRRRLEEETREAVWRAEQEQLEATR 641 (2469)
Q Consensus 608 eReaREEEERRRReEEEEREeEeeEEKEReEAeR 641 (2469)
..-.+..++.+++++++++.+++++++++.+++|
T Consensus 298 ~~~~~a~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 331 (332)
T d1v9da_ 298 NMFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 7
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.08 E-value=5.6e+02 Score=27.35 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000063 647 RIAREEERQRIIMEEERRKHAAKQKLLELEE 677 (2469)
Q Consensus 647 RrRREEEErRREEEEERRREEEEERRrEEEE 677 (2469)
++..++.++|++++++.++.++.+++.+.++
T Consensus 301 ~~a~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 331 (332)
T d1v9da_ 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 8
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=2.78 E-value=1.4e+03 Score=19.70 Aligned_cols=153 Identities=5% Similarity=-0.047 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000063 547 LVGVVKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETR 626 (2469)
Q Consensus 547 m~alVRKKKEaaKqaE~EdK~REEeEAELERRqEeEEEERqReEEEQEREeEEeRKEEEEReReaREEEERRRReEEEER 626 (2469)
+..+..................................................................+.........
T Consensus 31 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (185)
T d2ap3a1 31 IAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKEVKQLDDV 110 (185)
T ss_dssp HHHHHHHHHTTTTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhh
Q 000063 627 EAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADE 699 (2469)
Q Consensus 627 EeEeeEEKEReEAeRKEEEERrRREEEErRREEEEERRREEEEERRrEEEERqKKeQaEeEKrRrqAEakAkE 699 (2469)
...............+..........+...............................+......+.......
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ek~~ 183 (185)
T d2ap3a1 111 LKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQD 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 9
>d1oopa_ b.121.4.1 (A:) Swine vesicular disease virus coat proteins {Swine vesicular disease virus [TaxId: 12075]}
Probab=2.69 E-value=2.2e+02 Score=31.10 Aligned_cols=22 Identities=36% Similarity=0.739 Sum_probs=0.0
Q ss_pred cccCccCccccccccccccc-cc
Q 000063 2162 YNHFAPVGQFGQVGLSFMGT-YI 2183 (2469)
Q Consensus 2162 ynhfapvgqfgq~gl~fmg~-yi 2183 (2469)
|.||..-|++|+.-+-+||+ +|
T Consensus 186 y~~f~~~~~YG~~p~N~mGtl~v 208 (271)
T d1oopa_ 186 WARFDKQGTYGISTLNNMGTLYM 208 (271)
T ss_dssp BSSTTSCSCBSGGGTCCCCEEEE
T ss_pred CCCCCCCCCCccccccCCeeEEE
No 10
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=2.47 E-value=1.9e+03 Score=23.71 Aligned_cols=110 Identities=11% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000063 583 EQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEE 662 (2469)
Q Consensus 583 EEERqReEEEQEREeEEeRKEEEEReReaREEEERRRReEEEEREeEeeEEKEReEAeRKEEEERrRREEEErRREEEEE 662 (2469)
++......+-...+.|.+.-.++..........+...+.++.+.+...-.++-..++..-++....+++-+..+.+.+..
T Consensus 253 ~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 253 EEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 000063 663 RRKHAAKQKLLELEERIAKRQAEAAKSDSN 692 (2469)
Q Consensus 663 RRREEEEERRrEEEERqKKeQaEeEKrRrq 692 (2469)
++...-++.-+..-......+.+.++...+
T Consensus 333 ~r~gd~e~AaeL~y~~ip~le~el~~l~~~ 362 (387)
T d1qvra2 333 ERQYDLNRAAELRYGELPKLEAEVEALSEK 362 (387)
T ss_dssp TTTTCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHhhchHHHHHHHHHHHHHH
Done!