Query 000064
Match_columns 2464
No_of_seqs 298 out of 1418
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 16:11:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00121 MAEBL; Provisional 98.7 1.5E-07 3.2E-12 123.0 17.1 10 82-91 603-612 (2084)
2 PTZ00121 MAEBL; Provisional 98.7 1.6E-07 3.4E-12 122.8 16.9 9 318-326 832-840 (2084)
3 KOG1029 Endocytic adaptor prot 98.6 7.8E-07 1.7E-11 111.8 17.5 15 871-885 725-739 (1118)
4 PF07001 BAT2_N: BAT2 N-termin 98.6 1.9E-07 4.1E-12 104.3 9.5 73 8-119 16-88 (189)
5 PTZ00266 NIMA-related protein 98.5 2.4E-06 5.2E-11 113.4 19.7 15 52-66 25-39 (1021)
6 KOG4364 Chromatin assembly fac 98.5 1E-05 2.2E-10 101.3 22.7 25 827-851 510-534 (811)
7 KOG0163 Myosin class VI heavy 98.5 8.6E-07 1.9E-11 111.0 13.0 48 845-895 1209-1256(1259)
8 KOG1029 Endocytic adaptor prot 98.4 3.7E-06 8E-11 106.0 16.7 11 81-91 93-103 (1118)
9 PTZ00266 NIMA-related protein 98.2 1E-05 2.2E-10 107.7 15.1 11 850-861 691-701 (1021)
10 KOG4364 Chromatin assembly fac 98.1 4.9E-05 1.1E-09 95.6 15.1 20 1272-1291 750-769 (811)
11 COG3064 TolA Membrane protein 98.0 8.7E-05 1.9E-09 87.6 14.9 18 551-568 67-84 (387)
12 PRK09510 tolA cell envelope in 97.8 0.0011 2.4E-08 81.5 19.7 7 884-890 363-369 (387)
13 COG3064 TolA Membrane protein 97.7 0.00083 1.8E-08 79.7 15.6 9 913-921 362-370 (387)
14 KOG4661 Hsp27-ERE-TATA-binding 97.7 0.0023 4.9E-08 79.8 19.8 44 786-831 781-829 (940)
15 KOG2891 Surface glycoprotein [ 97.6 0.0026 5.7E-08 74.4 18.5 22 552-573 276-297 (445)
16 KOG2891 Surface glycoprotein [ 97.6 0.0016 3.5E-08 76.1 16.8 9 474-482 228-236 (445)
17 KOG0163 Myosin class VI heavy 97.5 0.001 2.3E-08 84.7 14.4 16 760-775 1095-1110(1259)
18 PF05262 Borrelia_P83: Borreli 97.5 0.002 4.3E-08 81.3 16.7 9 547-555 182-190 (489)
19 KOG4661 Hsp27-ERE-TATA-binding 97.5 0.0028 6.1E-08 79.1 16.9 20 236-256 256-275 (940)
20 KOG1144 Translation initiation 97.2 0.0013 2.7E-08 84.6 10.8 13 1132-1144 730-742 (1064)
21 PF12037 DUF3523: Domain of un 97.1 0.017 3.7E-07 68.7 17.2 11 507-517 25-35 (276)
22 KOG2072 Translation initiation 97.0 0.13 2.8E-06 67.8 24.9 13 762-774 897-909 (988)
23 KOG2412 Nuclear-export-signal 97.0 0.021 4.6E-07 72.2 17.7 23 829-851 424-446 (591)
24 KOG2412 Nuclear-export-signal 96.9 0.021 4.6E-07 72.1 16.9 9 836-844 456-464 (591)
25 KOG0742 AAA+-type ATPase [Post 96.7 0.037 8.1E-07 68.6 16.0 11 722-732 253-263 (630)
26 KOG2072 Translation initiation 96.5 0.27 5.8E-06 65.0 22.4 7 724-730 888-894 (988)
27 PF12037 DUF3523: Domain of un 96.2 0.45 9.7E-06 57.3 20.5 11 533-543 22-32 (276)
28 KOG0742 AAA+-type ATPase [Post 96.0 0.21 4.5E-06 62.4 17.4 6 538-543 71-76 (630)
29 TIGR03319 YmdA_YtgF conserved 95.7 0.14 3.1E-06 65.7 15.1 6 780-785 249-254 (514)
30 KOG3054 Uncharacterized conser 95.6 0.075 1.6E-06 62.3 10.7 9 761-769 249-257 (299)
31 PRK00106 hypothetical protein; 95.2 0.27 5.8E-06 63.6 15.0 6 780-785 270-275 (535)
32 PF09726 Macoilin: Transmembra 95.0 0.61 1.3E-05 62.1 17.5 9 188-196 196-204 (697)
33 KOG3654 Uncharacterized CH dom 94.3 0.2 4.4E-06 63.0 10.3 20 201-220 115-134 (708)
34 PRK12705 hypothetical protein; 92.7 4.9 0.00011 52.3 18.9 13 547-559 21-33 (508)
35 KOG4817 Unnamed protein [Funct 91.4 3 6.4E-05 51.9 14.0 75 8-120 15-89 (468)
36 KOG3654 Uncharacterized CH dom 91.4 0.97 2.1E-05 57.4 10.2 17 75-91 17-33 (708)
37 KOG0579 Ste20-like serine/thre 90.9 5 0.00011 52.9 15.8 11 346-356 574-584 (1187)
38 PRK00409 recombination and DNA 90.9 5.5 0.00012 54.1 17.2 7 281-287 226-232 (782)
39 TIGR01069 mutS2 MutS2 family p 90.8 5.1 0.00011 54.3 16.9 14 277-290 217-230 (771)
40 KOG1103 Predicted coiled-coil 90.6 0.98 2.1E-05 55.3 9.1 87 913-1011 399-491 (561)
41 COG4942 Membrane-bound metallo 90.6 9.5 0.00021 48.8 17.7 8 787-794 358-365 (420)
42 KOG2689 Predicted ubiquitin re 90.5 2 4.3E-05 51.9 11.2 15 798-812 249-263 (290)
43 PF02029 Caldesmon: Caldesmon; 89.4 1 2.3E-05 57.9 8.5 9 876-884 460-468 (492)
44 PF10147 CR6_interact: Growth 88.0 20 0.00043 42.7 16.7 24 529-552 63-88 (217)
45 PF05914 RIB43A: RIB43A; Inte 87.4 32 0.00069 43.7 19.1 7 537-543 142-148 (379)
46 PLN02316 synthase/transferase 87.2 12 0.00026 52.5 16.5 20 767-786 508-529 (1036)
47 KOG2507 Ubiquitin regulatory p 87.0 1.4 3E-05 55.5 7.1 11 859-869 423-433 (506)
48 PF06637 PV-1: PV-1 protein (P 87.0 12 0.00027 47.1 14.8 13 751-763 408-420 (442)
49 KOG1265 Phospholipase C [Lipid 86.5 29 0.00062 47.7 18.5 41 318-365 752-794 (1189)
50 PTZ00491 major vault protein; 86.3 3.9 8.4E-05 55.4 11.1 19 497-515 583-601 (850)
51 PTZ00491 major vault protein; 86.3 17 0.00036 49.8 16.7 11 150-160 198-208 (850)
52 COG2268 Uncharacterized protei 86.2 17 0.00036 48.0 16.2 7 340-346 95-101 (548)
53 KOG1103 Predicted coiled-coil 86.1 18 0.0004 44.9 15.5 22 515-536 48-72 (561)
54 PF09731 Mitofilin: Mitochondr 85.8 41 0.0009 44.1 19.7 16 318-333 26-41 (582)
55 KOG4722 Zn-finger protein [Gen 85.6 20 0.00044 45.4 15.7 17 189-205 82-98 (672)
56 COG4372 Uncharacterized protei 85.4 31 0.00068 43.8 17.1 14 547-560 79-92 (499)
57 KOG3634 Troponin [Cytoskeleton 85.1 15 0.00032 45.7 14.1 19 745-763 291-309 (361)
58 PF12128 DUF3584: Protein of u 84.7 27 0.00059 49.8 18.5 7 509-515 568-574 (1201)
59 PLN02316 synthase/transferase 84.7 9.4 0.0002 53.4 13.8 9 267-275 120-128 (1036)
60 KOG2507 Ubiquitin regulatory p 84.0 2 4.3E-05 54.2 6.6 8 805-812 360-367 (506)
61 KOG0994 Extracellular matrix g 83.8 13 0.00029 51.6 14.0 64 162-232 1193-1261(1758)
62 KOG0579 Ste20-like serine/thre 83.7 13 0.00028 49.4 13.4 13 182-194 472-484 (1187)
63 KOG0982 Centrosomal protein Nu 83.1 64 0.0014 41.7 18.5 9 549-557 225-233 (502)
64 KOG0994 Extracellular matrix g 82.2 38 0.00082 47.6 17.0 9 722-730 1740-1748(1758)
65 KOG3634 Troponin [Cytoskeleton 82.0 12 0.00026 46.5 11.7 8 779-786 303-310 (361)
66 KOG0161 Myosin class II heavy 81.6 36 0.00079 50.5 17.9 9 185-193 302-310 (1930)
67 KOG0980 Actin-binding protein 81.5 1.1E+02 0.0025 42.5 20.8 9 525-533 311-319 (980)
68 KOG1265 Phospholipase C [Lipid 81.2 57 0.0012 45.1 17.9 19 341-359 740-758 (1189)
69 PRK13428 F0F1 ATP synthase sub 81.1 64 0.0014 41.7 18.2 12 836-847 253-264 (445)
70 KOG0161 Myosin class II heavy 81.0 42 0.00091 49.9 18.1 11 253-263 454-464 (1930)
71 PRK12472 hypothetical protein; 80.2 20 0.00042 46.7 13.1 10 469-478 122-131 (508)
72 PF04094 DUF390: Protein of un 78.7 55 0.0012 44.4 16.6 14 740-753 686-699 (828)
73 KOG1363 Predicted regulator of 78.7 9 0.00019 49.5 9.8 11 501-511 205-215 (460)
74 KOG0288 WD40 repeat protein Ti 78.5 78 0.0017 40.9 17.1 15 997-1011 383-397 (459)
75 TIGR02680 conserved hypothetic 78.1 45 0.00097 48.3 17.1 6 349-354 33-38 (1353)
76 PF05914 RIB43A: RIB43A; Inte 77.8 98 0.0021 39.6 18.1 14 511-524 130-143 (379)
77 PF06098 Radial_spoke_3: Radia 77.5 20 0.00044 44.1 11.8 13 336-348 3-15 (291)
78 COG2433 Uncharacterized conser 77.0 55 0.0012 43.8 15.8 9 539-547 343-351 (652)
79 PF10168 Nup88: Nuclear pore c 75.1 43 0.00093 45.7 14.9 11 81-91 83-93 (717)
80 PF04094 DUF390: Protein of un 74.3 88 0.0019 42.7 16.7 8 477-484 343-350 (828)
81 KOG0612 Rho-associated, coiled 73.9 36 0.00078 48.2 13.7 14 469-483 389-402 (1317)
82 KOG4572 Predicted DNA-binding 73.8 60 0.0013 44.3 15.0 15 69-84 229-243 (1424)
83 KOG3756 Pinin (desmosome-assoc 73.8 1.3E+02 0.0028 37.9 16.9 13 376-388 53-65 (340)
84 PF07888 CALCOCO1: Calcium bin 73.5 1.9E+02 0.004 38.9 19.3 9 753-761 497-505 (546)
85 PRK04863 mukB cell division pr 72.5 1E+02 0.0023 45.3 18.3 12 1288-1299 830-841 (1486)
86 KOG0933 Structural maintenance 72.0 1.4E+02 0.003 42.2 18.0 14 504-517 632-645 (1174)
87 PF07227 DUF1423: Protein of u 71.8 53 0.0011 42.7 13.7 7 478-484 261-267 (446)
88 KOG0249 LAR-interacting protei 71.6 50 0.0011 44.7 13.6 12 912-923 440-451 (916)
89 TIGR02169 SMC_prok_A chromosom 70.5 1.4E+02 0.0031 41.5 18.6 7 779-785 573-579 (1164)
90 PRK04863 mukB cell division pr 68.4 1.7E+02 0.0036 43.4 18.9 7 1892-1898 1366-1372(1486)
91 PF05667 DUF812: Protein of un 67.9 1.9E+02 0.0041 39.2 18.0 9 187-195 47-55 (594)
92 KOG0971 Microtubule-associated 67.1 1E+02 0.0022 42.9 15.2 33 308-352 46-79 (1243)
93 KOG4722 Zn-finger protein [Gen 66.5 2.1E+02 0.0045 37.2 16.7 9 551-559 281-289 (672)
94 KOG0996 Structural maintenance 66.2 84 0.0018 44.8 14.5 6 904-909 731-736 (1293)
95 KOG2129 Uncharacterized conser 66.1 3.1E+02 0.0067 35.9 18.1 21 871-891 478-498 (552)
96 KOG2441 mRNA splicing factor/p 65.7 22 0.00048 45.0 8.6 10 754-763 413-422 (506)
97 KOG2893 Zn finger protein [Gen 64.5 1.6E+02 0.0034 36.0 14.5 82 2215-2317 187-271 (341)
98 PF12297 EVC2_like: Ellis van 64.2 1.3E+02 0.0028 39.1 14.8 18 408-425 97-114 (429)
99 KOG2894 Uncharacterized conser 63.2 1.1E+02 0.0024 37.8 13.3 14 843-856 311-324 (331)
100 KOG2441 mRNA splicing factor/p 63.0 31 0.00067 43.9 9.1 6 736-741 416-421 (506)
101 KOG0288 WD40 repeat protein Ti 62.3 3.2E+02 0.007 35.7 17.4 8 1004-1011 354-361 (459)
102 KOG3598 Thyroid hormone recept 61.5 20 0.00042 51.0 7.6 12 376-387 1924-1935(2220)
103 KOG4403 Cell surface glycoprot 61.3 2.2E+02 0.0047 37.2 15.7 6 454-459 132-137 (575)
104 COG1196 Smc Chromosome segrega 60.8 2.4E+02 0.0051 40.7 18.1 10 916-925 645-654 (1163)
105 KOG3859 Septins (P-loop GTPase 60.6 1.3E+02 0.0028 37.6 13.3 8 399-406 144-151 (406)
106 PF15558 DUF4659: Domain of un 60.0 4.9E+02 0.011 33.8 18.6 8 701-708 323-330 (376)
107 COG4499 Predicted membrane pro 57.5 25 0.00054 44.7 7.1 24 545-568 344-367 (434)
108 PRK03918 chromosome segregatio 56.8 3.8E+02 0.0082 37.0 18.4 7 349-355 32-38 (880)
109 KOG0976 Rho/Rac1-interacting s 56.3 3.1E+02 0.0067 38.3 16.4 24 1061-1084 812-837 (1265)
110 KOG4673 Transcription factor T 54.7 4.1E+02 0.009 36.6 17.1 10 550-559 447-456 (961)
111 KOG4572 Predicted DNA-binding 53.6 3E+02 0.0066 38.3 15.7 7 291-297 511-517 (1424)
112 KOG0976 Rho/Rac1-interacting s 53.6 4.1E+02 0.0089 37.2 16.9 13 1534-1546 1197-1209(1265)
113 KOG2505 Ankyrin repeat protein 52.9 54 0.0012 43.1 9.0 12 407-418 326-337 (591)
114 KOG3915 Transcription regulato 52.7 65 0.0014 41.9 9.5 20 36-55 71-90 (641)
115 KOG0996 Structural maintenance 51.3 4.4E+02 0.0096 38.3 17.3 10 549-558 309-318 (1293)
116 KOG0250 DNA repair protein RAD 51.1 3.9E+02 0.0084 38.5 16.8 23 279-302 496-520 (1074)
117 KOG0249 LAR-interacting protei 48.9 4.9E+02 0.011 36.2 16.5 13 1493-1505 823-835 (916)
118 PF07111 HCR: Alpha helical co 48.6 4.6E+02 0.0099 36.4 16.4 9 767-775 308-316 (739)
119 PF00901 Orbi_VP5: Orbivirus o 47.5 6.1E+02 0.013 34.1 16.8 11 539-549 78-88 (508)
120 KOG0612 Rho-associated, coiled 46.8 6.8E+02 0.015 36.8 18.0 15 56-70 91-105 (1317)
121 PF07227 DUF1423: Protein of u 46.6 2.2E+02 0.0047 37.5 12.8 13 338-350 154-166 (446)
122 KOG0250 DNA repair protein RAD 44.4 6E+02 0.013 36.8 17.0 16 435-450 557-572 (1074)
123 PLN03188 kinesin-12 family pro 44.3 5.1E+02 0.011 38.1 16.5 20 407-426 671-690 (1320)
124 KOG0804 Cytoplasmic Zn-finger 43.7 8.8E+02 0.019 32.4 17.2 10 376-385 235-244 (493)
125 KOG0247 Kinesin-like protein [ 42.9 3.5E+02 0.0077 37.6 14.2 6 354-359 328-333 (809)
126 KOG0345 ATP-dependent RNA heli 42.8 96 0.0021 40.9 9.0 15 373-387 349-363 (567)
127 PLN03188 kinesin-12 family pro 42.8 7.5E+02 0.016 36.6 17.7 12 70-81 65-76 (1320)
128 PF15359 CDV3: Carnitine defic 41.6 63 0.0014 36.0 6.4 62 117-193 60-123 (129)
129 KOG2751 Beclin-like protein [S 40.0 4.5E+02 0.0097 34.7 13.9 18 832-849 380-397 (447)
130 PF03154 Atrophin-1: Atrophin- 38.3 17 0.00037 50.1 1.9 28 1109-1137 853-880 (982)
131 COG0419 SbcC ATPase involved i 37.1 1.3E+03 0.028 32.8 18.9 7 349-355 34-40 (908)
132 PRK10361 DNA recombination pro 36.6 1.2E+03 0.026 31.3 18.3 15 714-728 200-216 (475)
133 KOG0933 Structural maintenance 36.5 9.8E+02 0.021 34.8 16.9 6 780-785 1043-1048(1174)
134 KOG2341 TATA box binding prote 36.0 1.5E+02 0.0033 39.8 9.5 7 85-91 10-16 (563)
135 KOG0979 Structural maintenance 35.2 8.7E+02 0.019 35.2 16.2 12 500-511 146-157 (1072)
136 PF15556 Zwint: ZW10 interacto 35.2 9.1E+02 0.02 29.4 18.5 7 537-543 45-51 (252)
137 COG5281 Phage-related minor ta 34.6 6.7E+02 0.014 35.6 15.2 11 178-188 42-52 (833)
138 PF03154 Atrophin-1: Atrophin- 34.0 22 0.00049 49.1 2.0 10 827-837 698-707 (982)
139 KOG1425 Microfibrillar-associa 33.0 2.7E+02 0.0058 35.8 10.3 7 327-333 74-80 (430)
140 PF12004 DUF3498: Domain of un 33.0 14 0.00031 48.1 0.0 8 379-386 236-243 (495)
141 PF00901 Orbi_VP5: Orbivirus o 32.7 1.4E+03 0.031 30.9 17.5 8 840-847 401-408 (508)
142 KOG0338 ATP-dependent RNA heli 32.0 2.9E+02 0.0062 37.2 10.7 6 412-417 357-362 (691)
143 KOG2505 Ankyrin repeat protein 31.5 1.9E+02 0.0041 38.5 9.0 8 213-220 103-110 (591)
144 KOG0971 Microtubule-associated 31.3 1.1E+03 0.024 33.9 16.0 14 1328-1341 1108-1121(1243)
145 KOG3973 Uncharacterized conser 31.3 78 0.0017 40.0 5.6 57 71-127 310-393 (465)
146 KOG0577 Serine/threonine prote 30.9 8.6E+02 0.019 33.8 14.6 15 261-275 210-224 (948)
147 KOG3878 Protein involved in ma 30.9 1.3E+02 0.0028 38.1 7.2 13 909-921 403-415 (469)
148 PRK10929 putative mechanosensi 28.5 1.6E+03 0.035 33.1 17.8 18 1656-1673 1061-1078(1109)
149 PRK05035 electron transport co 28.3 1.4E+02 0.0031 41.0 7.7 32 151-182 73-106 (695)
150 KOG0577 Serine/threonine prote 28.2 1.7E+03 0.037 31.2 16.6 6 484-489 406-411 (948)
151 KOG3878 Protein involved in ma 27.7 1.2E+03 0.026 30.1 14.4 15 537-551 86-101 (469)
152 KOG3973 Uncharacterized conser 27.3 43 0.00093 42.1 2.6 20 36-55 441-460 (465)
153 KOG4715 SWI/SNF-related matrix 26.7 5.1E+02 0.011 33.0 11.1 12 279-290 25-36 (410)
154 PF04615 Utp14: Utp14 protein; 26.6 5.9E+02 0.013 35.2 13.0 48 1099-1146 584-633 (735)
155 KOG1832 HIV-1 Vpr-binding prot 26.5 42 0.00091 46.2 2.5 26 1101-1126 1426-1451(1516)
156 PRK05035 electron transport co 25.9 1.9E+02 0.0042 39.7 8.3 12 545-556 425-436 (695)
157 KOG0979 Structural maintenance 25.6 2.3E+03 0.05 31.4 17.8 17 185-201 347-363 (1072)
158 KOG4715 SWI/SNF-related matrix 25.6 2.3E+02 0.005 35.8 8.1 12 381-392 92-103 (410)
159 KOG1924 RhoA GTPase effector D 25.3 1.9E+02 0.0041 40.1 7.8 89 2034-2167 520-613 (1102)
160 PF07767 Nop53: Nop53 (60S rib 25.0 2.7E+02 0.0058 35.4 8.9 8 539-546 186-193 (387)
161 KOG2962 Prohibitin-related mem 24.8 1.4E+03 0.029 28.5 13.7 7 478-484 35-41 (322)
162 PRK10929 putative mechanosensi 24.8 1.9E+03 0.041 32.5 17.4 6 1110-1115 770-775 (1109)
163 PF04615 Utp14: Utp14 protein; 24.6 3.4E+02 0.0073 37.4 10.2 7 1132-1138 596-602 (735)
164 PRK10246 exonuclease subunit S 23.4 2.5E+03 0.054 30.8 18.4 7 349-355 39-45 (1047)
165 PF09744 Jnk-SapK_ap_N: JNK_SA 23.3 7.9E+02 0.017 28.6 11.2 22 530-551 17-38 (158)
166 TIGR00606 rad50 rad50. This fa 22.7 2.5E+03 0.054 31.5 18.5 135 573-707 825-959 (1311)
167 PLN02372 violaxanthin de-epoxi 22.5 9.5E+02 0.021 31.9 12.6 7 381-387 243-249 (455)
168 KOG2823 Cellular protein (glio 22.5 3.3E+02 0.0073 35.7 8.9 6 316-321 18-23 (438)
169 KOG0923 mRNA splicing factor A 22.3 2E+02 0.0043 39.6 7.1 18 1281-1298 600-621 (902)
170 PF15066 CAGE1: Cancer-associa 22.2 2.1E+03 0.045 29.4 17.9 36 185-220 20-57 (527)
171 COG2811 NtpF Archaeal/vacuolar 21.8 1.1E+03 0.025 26.2 12.0 75 584-658 10-84 (108)
172 PTZ00332 paraflagellar rod pro 21.7 2E+03 0.043 29.7 15.3 19 539-557 182-200 (589)
173 PF07960 CBP4: CBP4; InterPro 21.6 3E+02 0.0065 31.1 7.3 84 574-657 43-128 (128)
174 PF15295 CCDC50_N: Coiled-coil 21.5 1.3E+03 0.028 26.6 14.9 97 593-689 34-130 (132)
175 KOG3088 Secretory carrier memb 21.3 1.2E+02 0.0025 37.9 4.6 30 641-670 63-92 (313)
176 KOG0243 Kinesin-like protein [ 21.1 2.9E+03 0.062 30.6 17.6 47 327-376 159-206 (1041)
177 PRK11281 hypothetical protein; 20.6 2.8E+03 0.06 30.9 17.8 20 1656-1675 1064-1083(1113)
178 PF07415 Herpes_LMP2: Gammaher 20.6 34 0.00074 43.0 0.1 41 93-133 14-54 (489)
179 KOG0245 Kinesin-like protein [ 20.2 9.8E+02 0.021 34.9 12.8 13 173-185 331-343 (1221)
180 PRK13203 ureB urease subunit b 20.2 38 0.00083 36.5 0.3 14 2070-2083 37-50 (102)
No 1
>PTZ00121 MAEBL; Provisional
Probab=98.74 E-value=1.5e-07 Score=123.04 Aligned_cols=10 Identities=50% Similarity=0.610 Sum_probs=6.4
Q ss_pred cccccccccC
Q 000064 82 SLRKEHERFD 91 (2464)
Q Consensus 82 slrkehe~~d 91 (2464)
---+.-+|||
T Consensus 603 pq~~~m~rfd 612 (2084)
T PTZ00121 603 PQQKFMERFD 612 (2084)
T ss_pred cHHHHHHhcC
Confidence 3456677777
No 2
>PTZ00121 MAEBL; Provisional
Probab=98.73 E-value=1.6e-07 Score=122.77 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=4.7
Q ss_pred ccccCCCCC
Q 000064 318 AYWEGDFDM 326 (2464)
Q Consensus 318 ~~w~~~fd~ 326 (2464)
+.|+.+|+-
T Consensus 832 pC~e~~~~N 840 (2084)
T PTZ00121 832 PCLEGSFGN 840 (2084)
T ss_pred ccCCCCCCc
Confidence 455555553
No 3
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=7.8e-07 Score=111.76 Aligned_cols=15 Identities=33% Similarity=0.767 Sum_probs=10.5
Q ss_pred cCCcccccCCCCCCC
Q 000064 871 YGDVGWGQGRYRGNV 885 (2464)
Q Consensus 871 fGD~gW~qs~s~grp 885 (2464)
-|..||+.+.-+|.+
T Consensus 725 ~aEPGWlaGel~gkt 739 (1118)
T KOG1029|consen 725 AAEPGWLAGELRGKT 739 (1118)
T ss_pred cCCcccccceecccc
Confidence 366778777777764
No 4
>PF07001 BAT2_N: BAT2 N-terminus; InterPro: IPR009738 This entry represents the N terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin [].
Probab=98.56 E-value=1.9e-07 Score=104.29 Aligned_cols=73 Identities=33% Similarity=0.535 Sum_probs=50.5
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeeccCccccccCCccccCCCCCCCcccccc
Q 000064 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (2464)
Q Consensus 8 ~k~~svnln~~yg~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~gggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh 87 (2464)
.||.++|||..|--.+.-- + -....-..||.+|++= +.. --||||.||||||.||
T Consensus 16 ~Ky~~l~in~~YkGks~e~---------q---------k~~~~~~hGmqsLGKv------~~a-RRmPpPaNLPSLKaEn 70 (189)
T PF07001_consen 16 PKYSSLNINSLYKGKSLEP---------Q---------KSTVPRRHGMQSLGKV------PSA-RRMPPPANLPSLKAEN 70 (189)
T ss_pred ccceeechhhhhcCCcccc---------c---------cCCccCCCcceecccc------ccc-ccCCCCCCCcchhhhc
Confidence 3899999999993333210 1 1122236799999982 111 1289999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000064 88 ERFDSSGSNGGPAGGGVSGAGQRPGSSGTGWT 119 (2464)
Q Consensus 88 e~~ds~g~~~g~~~~~~~g~g~rp~ssg~gwt 119 (2464)
.++| |+...|+.. |.||+
T Consensus 71 ~GnD-------pnv~lVP~~-------GsGWa 88 (189)
T PF07001_consen 71 KGND-------PNVSLVPKG-------GSGWA 88 (189)
T ss_pred cCCC-------CCceeecCC-------CcCcc
Confidence 9999 776655543 46998
No 5
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.53 E-value=2.4e-06 Score=113.40 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=8.9
Q ss_pred CCceEEeeccCcccc
Q 000064 52 GGGMLVLSRPRSSQK 66 (2464)
Q Consensus 52 gggm~vlsr~r~~~~ 66 (2464)
+=|.|.|.+.+.+..
T Consensus 25 gFGtVYLAkdk~tg~ 39 (1021)
T PTZ00266 25 RFGEVFLVKHKRTQE 39 (1021)
T ss_pred CCeEEEEEEECCCCe
Confidence 345677777665543
No 6
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.49 E-value=1e-05 Score=101.34 Aligned_cols=25 Identities=12% Similarity=0.447 Sum_probs=19.3
Q ss_pred cccccchhhccccccCccccCCCCC
Q 000064 827 GILEPHMDEFTVSRGQRWNMSGDGD 851 (2464)
Q Consensus 827 G~tD~~LeDYr~~~p~rWnipGD~D 851 (2464)
-+-...++||.++.+..|.-...|.
T Consensus 510 PlAq~~llDYEVdSDeEWEEEepGE 534 (811)
T KOG4364|consen 510 PLAQDPLLDYEVDSDEEWEEEEPGE 534 (811)
T ss_pred cccccccccccccCcccccccCCCc
Confidence 3444578999999999998766555
No 7
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=98.48 E-value=8.6e-07 Score=110.96 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=35.5
Q ss_pred ccCCCCCCcCCcccccchhccccccccCCcccccCCCCCCCCCCCCCCCCC
Q 000064 845 NMSGDGDHYGRNIEMESDFHENITERYGDVGWGQGRYRGNVHPPYPDRIYP 895 (2464)
Q Consensus 845 nipGD~Dt~gr~~e~dsdf~en~~ERfGD~gW~qs~s~grp~PP~~~RmYq 895 (2464)
+....+.+-+|.+||.++-||.+|||||+..+.+ -+-..|.++..|.|
T Consensus 1209 ~LeeTgL~rKrGAEI~~~eFe~~W~r~Ggk~~~~---~~~a~p~~~~a~~q 1256 (1259)
T KOG0163|consen 1209 SLEETGLTRKRGAEILEHEFEREWERNGGKAYKN---LGAAKPNGPAAAMQ 1256 (1259)
T ss_pred hhHhhccccccccccChHHHHHHHHHhCcHHhHh---hcccCCCchHHHHh
Confidence 3445556789999999999999999999988887 23344555555443
No 8
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=3.7e-06 Score=106.02 Aligned_cols=11 Identities=45% Similarity=0.492 Sum_probs=6.0
Q ss_pred CcccccccccC
Q 000064 81 PSLRKEHERFD 91 (2464)
Q Consensus 81 pslrkehe~~d 91 (2464)
|||-|---+|-
T Consensus 93 Psll~~~~~~~ 103 (1118)
T KOG1029|consen 93 PSLLKQPPRNA 103 (1118)
T ss_pred hHHhccCCcCC
Confidence 45666555544
No 9
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.23 E-value=1e-05 Score=107.66 Aligned_cols=11 Identities=36% Similarity=0.755 Sum_probs=6.9
Q ss_pred CCCcCCcccccc
Q 000064 850 GDHYGRNIEMES 861 (2464)
Q Consensus 850 ~Dt~gr~~e~ds 861 (2464)
+|+|+|+ +|+.
T Consensus 691 ~~~~~~~-~~~~ 701 (1021)
T PTZ00266 691 QDTFDRN-DMHG 701 (1021)
T ss_pred ccccchh-hhhH
Confidence 6777776 4544
No 10
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.06 E-value=4.9e-05 Score=95.62 Aligned_cols=20 Identities=30% Similarity=0.200 Sum_probs=10.6
Q ss_pred CCCcceEEEeecccCCCCCC
Q 000064 1272 QAETPVKLQFGLFSGPSLIP 1291 (2464)
Q Consensus 1272 ~~E~pv~lqFGlfsGpsLip 1291 (2464)
++.++|+-|+-.--|++--|
T Consensus 750 ~~~lqv~~qw~y~l~~~~sp 769 (811)
T KOG4364|consen 750 DSRLQVKKQWLYKLGLSPSP 769 (811)
T ss_pred cccccccceeeeeecCCCCC
Confidence 34566666665555544333
No 11
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=98.00 E-value=8.7e-05 Score=87.62 Aligned_cols=18 Identities=6% Similarity=0.206 Sum_probs=7.4
Q ss_pred HhhhhhhccccccCCcch
Q 000064 551 VKKKKDVLKQTDFHDPVR 568 (2464)
Q Consensus 551 VKKKKEeaKq~E~EEklR 568 (2464)
++.+++.+++.+.+++.+
T Consensus 67 ~q~Q~~~akk~e~~r~kk 84 (387)
T COG3064 67 IQSQQSSAKKGEQQRKKK 84 (387)
T ss_pred HHHHHHHHhhhHHHHHhh
Confidence 344444444444433333
No 12
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=97.78 E-value=0.0011 Score=81.50 Aligned_cols=7 Identities=29% Similarity=0.349 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 000064 884 NVHPPYP 890 (2464)
Q Consensus 884 rp~PP~~ 890 (2464)
.++|++|
T Consensus 363 a~lP~pP 369 (387)
T PRK09510 363 AKIPKPP 369 (387)
T ss_pred CCCCCCC
Confidence 4555444
No 13
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=97.67 E-value=0.00083 Score=79.72 Aligned_cols=9 Identities=22% Similarity=0.770 Sum_probs=3.4
Q ss_pred CCCCCCCCC
Q 000064 913 RHPRVLPPP 921 (2464)
Q Consensus 913 RqPRVlPPP 921 (2464)
|+-.||+||
T Consensus 362 k~~kiP~pp 370 (387)
T COG3064 362 KTAKIPKPP 370 (387)
T ss_pred HhccCCCCC
Confidence 333333333
No 14
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.67 E-value=0.0023 Score=79.83 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=27.2
Q ss_pred ccccCCCCCCCCCCCCCCCCCC---CcCCCCCCC--cccccCCCCCccccc
Q 000064 786 QDAENGHYSPRRDSAFGGRAVP---RKEFYGGPG--IMSSRNYYKAGILEP 831 (2464)
Q Consensus 786 qd~eN~~~sPrrDs~fG~rspp---rK~f~gG~G--fvsK~sY~ggG~tD~ 831 (2464)
.|+.-+.|-| ++-.+|-+++ +.++.+||| |+.|++..|.|+.-+
T Consensus 781 gd~regqHyp--~~~~~hGGp~erHgrdsrdGwgGygsdKr~seGrGlppp 829 (940)
T KOG4661|consen 781 GDYREGQHYP--LSGTVHGGPSERHGRDSRDGWGGYGSDKRNSEGRGLPPP 829 (940)
T ss_pred ccchhhcccC--ccCccCCCchhhccCccCCCcccccccccccCCCCCCCC
Confidence 6767775555 3334444443 366777776 889998866665543
No 15
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.62 E-value=0.0026 Score=74.43 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=10.1
Q ss_pred hhhhhhccccccCCcchhhHHH
Q 000064 552 KKKKDVLKQTDFHDPVRESFEA 573 (2464)
Q Consensus 552 KKKKEeaKq~E~EEklREEeEa 573 (2464)
.|+.|+.++++.++...+++|.
T Consensus 276 akraeerrqieterlrqeeeel 297 (445)
T KOG2891|consen 276 AKRAEERRQIETERLRQEEEEL 297 (445)
T ss_pred HHHHHHHhhhhHHHHhhhHhhh
Confidence 4444555555554444444443
No 16
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.62 E-value=0.0016 Score=76.11 Aligned_cols=9 Identities=33% Similarity=0.678 Sum_probs=4.4
Q ss_pred ccccccCCc
Q 000064 474 QYNRFRGDA 482 (2464)
Q Consensus 474 QygrYrG~A 482 (2464)
||--|+|-+
T Consensus 228 qfmeykgfa 236 (445)
T KOG2891|consen 228 QFMEYKGFA 236 (445)
T ss_pred HHHHHHhHH
Confidence 444455544
No 17
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=97.51 E-value=0.001 Score=84.70 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=9.1
Q ss_pred ccCCCCCCCccccccc
Q 000064 760 FLDRGKPFNSWRRDAF 775 (2464)
Q Consensus 760 ~LDR~KPinSWrR~~f 775 (2464)
|..|.|.|+.|+..+.
T Consensus 1095 FhRRLkvY~~WKskN~ 1110 (1259)
T KOG0163|consen 1095 FHRRLKVYHAWKSKNR 1110 (1259)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 4456666666665443
No 18
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=97.50 E-value=0.002 Score=81.27 Aligned_cols=9 Identities=22% Similarity=0.434 Sum_probs=3.7
Q ss_pred hhhHHhhhh
Q 000064 547 LVGVVKKKK 555 (2464)
Q Consensus 547 Mle~VKKKK 555 (2464)
++..+++++
T Consensus 182 vv~~l~~~~ 190 (489)
T PF05262_consen 182 VVQELREDK 190 (489)
T ss_pred HHHHHhhcc
Confidence 334444433
No 19
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.46 E-value=0.0028 Score=79.05 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=13.2
Q ss_pred CCcccccCCCcccCCccccCC
Q 000064 236 GMSPRLQSGQDVVGSRLRENG 256 (2464)
Q Consensus 236 ~mrpq~q~~~~~~g~~~~~~~ 256 (2464)
-..|-+.+-+.+.|.+ ++++
T Consensus 256 eeedlfdSahpeegDl-Dlas 275 (940)
T KOG4661|consen 256 EEEDLFDSAHPEEGDL-DLAS 275 (940)
T ss_pred hccccccccCCccccc-cccc
Confidence 3556677778888776 5544
No 20
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0013 Score=84.58 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=5.8
Q ss_pred cceeeccccceee
Q 000064 1132 SNLVLGFNEGVEV 1144 (2464)
Q Consensus 1132 ~~~vlgf~egvev 1144 (2464)
|-+|||=-.|--|
T Consensus 730 D~IvvcG~~GpIv 742 (1064)
T KOG1144|consen 730 DQIVVCGLQGPIV 742 (1064)
T ss_pred CEEEEcCCCCchh
Confidence 5545544444333
No 21
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=97.07 E-value=0.017 Score=68.74 Aligned_cols=11 Identities=18% Similarity=-0.004 Sum_probs=4.7
Q ss_pred CCCCCCCCccc
Q 000064 507 HNFSRDKRPLL 517 (2464)
Q Consensus 507 lNFGRDkRl~~ 517 (2464)
..++|||-.+.
T Consensus 25 ~~~~FDP~aLE 35 (276)
T PF12037_consen 25 TASGFDPEALE 35 (276)
T ss_pred ccCCCCcHHHH
Confidence 34444444443
No 22
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.13 Score=67.75 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=8.3
Q ss_pred CCCCCCCcccccc
Q 000064 762 DRGKPFNSWRRDA 774 (2464)
Q Consensus 762 DR~KPinSWrR~~ 774 (2464)
.|+-+.+.|+|..
T Consensus 897 ~~a~~~~~WrR~a 909 (988)
T KOG2072|consen 897 PRAPEEAEWRRGA 909 (988)
T ss_pred CCCCcchHHhhcc
Confidence 3444667787776
No 23
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=97.00 E-value=0.021 Score=72.18 Aligned_cols=23 Identities=0% Similarity=-0.272 Sum_probs=15.5
Q ss_pred cccchhhccccccCccccCCCCC
Q 000064 829 LEPHMDEFTVSRGQRWNMSGDGD 851 (2464)
Q Consensus 829 tD~~LeDYr~~~p~rWnipGD~D 851 (2464)
-|..|+.++..||=.=.++.+.+
T Consensus 424 ~dlllA~l~KkCP~~VPf~~~~~ 446 (591)
T KOG2412|consen 424 GDLLLARLHKKCPYVVPFHIVNS 446 (591)
T ss_pred HHHHHHHHHhcCCccccccccCc
Confidence 34477788888886666666555
No 24
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=96.92 E-value=0.021 Score=72.12 Aligned_cols=9 Identities=11% Similarity=0.730 Sum_probs=3.8
Q ss_pred ccccccCcc
Q 000064 836 FTVSRGQRW 844 (2464)
Q Consensus 836 Yr~~~p~rW 844 (2464)
|+......|
T Consensus 456 yk~~d~nk~ 464 (591)
T KOG2412|consen 456 YKAWDSNKW 464 (591)
T ss_pred ccccccccc
Confidence 334444444
No 25
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.037 Score=68.56 Aligned_cols=11 Identities=36% Similarity=0.534 Sum_probs=5.7
Q ss_pred cccchhccccc
Q 000064 722 GERMVERITTS 732 (2464)
Q Consensus 722 sERmvDrI~TS 732 (2464)
.+..++.|+|.
T Consensus 253 Rekwl~aInTt 263 (630)
T KOG0742|consen 253 REKWLEAINTT 263 (630)
T ss_pred HHHHHHHHhhh
Confidence 34455555554
No 26
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.27 Score=65.00 Aligned_cols=7 Identities=14% Similarity=0.083 Sum_probs=2.7
Q ss_pred cchhccc
Q 000064 724 RMVERIT 730 (2464)
Q Consensus 724 RmvDrI~ 730 (2464)
+-.+.+.
T Consensus 888 a~~~~~s 894 (988)
T KOG2072|consen 888 AGPDAIS 894 (988)
T ss_pred ccccCCC
Confidence 3334433
No 27
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=96.17 E-value=0.45 Score=57.28 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=7.3
Q ss_pred CCCCCCCCCCc
Q 000064 533 GSSSFDGRDPF 543 (2464)
Q Consensus 533 GAsgfdG~DP~ 543 (2464)
+.....|+||.
T Consensus 22 ~~~~~~~FDP~ 32 (276)
T PF12037_consen 22 PRTTASGFDPE 32 (276)
T ss_pred CCcccCCCCcH
Confidence 34445688887
No 28
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.21 Score=62.39 Aligned_cols=6 Identities=50% Similarity=0.683 Sum_probs=3.1
Q ss_pred CCCCCc
Q 000064 538 DGRDPF 543 (2464)
Q Consensus 538 dG~DP~ 543 (2464)
.|.||.
T Consensus 71 ~gFDpe 76 (630)
T KOG0742|consen 71 SGFDPE 76 (630)
T ss_pred cCCChH
Confidence 355555
No 29
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.74 E-value=0.14 Score=65.69 Aligned_cols=6 Identities=33% Similarity=0.130 Sum_probs=3.3
Q ss_pred cccccc
Q 000064 780 SSTFIT 785 (2464)
Q Consensus 780 sS~FiP 785 (2464)
.|+|.|
T Consensus 249 ls~fdp 254 (514)
T TIGR03319 249 LSGFDP 254 (514)
T ss_pred ecCCch
Confidence 555654
No 30
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.075 Score=62.29 Aligned_cols=9 Identities=44% Similarity=0.342 Sum_probs=5.5
Q ss_pred cCCCCCCCc
Q 000064 761 LDRGKPFNS 769 (2464)
Q Consensus 761 LDR~KPinS 769 (2464)
-||+|+|-.
T Consensus 249 DDRGKfIYI 257 (299)
T KOG3054|consen 249 DDRGKFIYI 257 (299)
T ss_pred cCCCceEEe
Confidence 378776643
No 31
>PRK00106 hypothetical protein; Provisional
Probab=95.24 E-value=0.27 Score=63.59 Aligned_cols=6 Identities=33% Similarity=0.130 Sum_probs=3.2
Q ss_pred cccccc
Q 000064 780 SSTFIT 785 (2464)
Q Consensus 780 sS~FiP 785 (2464)
.|+|.|
T Consensus 270 lS~fdp 275 (535)
T PRK00106 270 LSGFDP 275 (535)
T ss_pred EeCCCh
Confidence 555554
No 32
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.97 E-value=0.61 Score=62.08 Aligned_cols=9 Identities=56% Similarity=0.693 Sum_probs=5.0
Q ss_pred cccccccCC
Q 000064 188 SLQAALPAA 196 (2464)
Q Consensus 188 sl~a~lp~~ 196 (2464)
.|+-|||+.
T Consensus 196 ~l~~~lp~~ 204 (697)
T PF09726_consen 196 LLQQALPPE 204 (697)
T ss_pred HHHHhCCCc
Confidence 455566554
No 33
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=94.33 E-value=0.2 Score=63.05 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=13.3
Q ss_pred hhhcccchhHhhhccccccc
Q 000064 201 KKQKDGFSQKQKQGMSQELG 220 (2464)
Q Consensus 201 ~k~k~~~~qk~kq~~~~~~~ 220 (2464)
||.-+.|.-||+|.|+.--+
T Consensus 115 kkkmea~fakqrqklgksaf 134 (708)
T KOG3654|consen 115 KKKMEAIFAKQRQKLGKSAF 134 (708)
T ss_pred HHHHHHHHHHHHHHhchhhe
Confidence 34455666788888876655
No 34
>PRK12705 hypothetical protein; Provisional
Probab=92.73 E-value=4.9 Score=52.32 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=6.5
Q ss_pred hhhHHhhhhhhcc
Q 000064 547 LVGVVKKKKDVLK 559 (2464)
Q Consensus 547 Mle~VKKKKEeaK 559 (2464)
|+..++++....+
T Consensus 21 ~~~~~~~~~~~~~ 33 (508)
T PRK12705 21 LVVLLKKRQRLAK 33 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554444
No 35
>KOG4817 consensus Unnamed protein [Function unknown]
Probab=91.40 E-value=3 Score=51.90 Aligned_cols=75 Identities=36% Similarity=0.509 Sum_probs=47.1
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeeccCccccccCCccccCCCCCCCcccccc
Q 000064 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (2464)
Q Consensus 8 ~k~~svnln~~yg~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~gggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh 87 (2464)
.||--|-||..|--.- .-.+- ..-..-+-||-.|.+ + ..---.|||-||||||-|-
T Consensus 15 ~K~talsin~~ykg~~-----------~~~aq------R~~vp~RhGmQslGK------a-~v~rrmpPPAnLPSLkaEn 70 (468)
T KOG4817|consen 15 PKFTALSINRMYKGSR-----------EPSAQ------RNQVPRRHGMQSLGK------A-KVPRRMPPPANLPSLKAEN 70 (468)
T ss_pred cCcceeehhhhhcCCc-----------CCccc------ccCCCccchhhhhcc------c-cccccCCCCCCCcchhhcc
Confidence 5888888888884331 10000 112333678877764 1 2223579999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000064 88 ERFDSSGSNGGPAGGGVSGAGQRPGSSGTGWTK 120 (2464)
Q Consensus 88 e~~ds~g~~~g~~~~~~~g~g~rp~ssg~gwtk 120 (2464)
-+.| |..-.|+--| +||.+
T Consensus 71 ~g~d-------pn~~lVp~~G-------Tgw~~ 89 (468)
T KOG4817|consen 71 HGSD-------PNNLLVPVEG-------TGWGG 89 (468)
T ss_pred cCCC-------CCceeeecCC-------ccccc
Confidence 9999 7655444333 47764
No 36
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=91.37 E-value=0.97 Score=57.36 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=10.0
Q ss_pred CCCCCCCcccccccccC
Q 000064 75 PPPLNLPSLRKEHERFD 91 (2464)
Q Consensus 75 p~plnlpslrkehe~~d 91 (2464)
+.||.--+-.++||--|
T Consensus 17 s~~l~ed~~~~~~ed~d 33 (708)
T KOG3654|consen 17 SKPLSEDPTKAPVEDPD 33 (708)
T ss_pred CcccccccccCCcCCCc
Confidence 44555445556777666
No 37
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=90.91 E-value=5 Score=52.93 Aligned_cols=11 Identities=9% Similarity=0.392 Sum_probs=5.7
Q ss_pred cCCcccccccc
Q 000064 346 QRDSETGKVSS 356 (2464)
Q Consensus 346 ~r~~e~~k~~~ 356 (2464)
+|.|+.|+|-.
T Consensus 574 ~~~~~~~~~k~ 584 (1187)
T KOG0579|consen 574 ERANAVSNIKT 584 (1187)
T ss_pred hhhhhhhhhhh
Confidence 35555555543
No 38
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=90.89 E-value=5.5 Score=54.14 Aligned_cols=7 Identities=43% Similarity=0.762 Sum_probs=2.7
Q ss_pred CCCeeec
Q 000064 281 PLPLVRL 287 (2464)
Q Consensus 281 plplvrl 287 (2464)
|..+|-|
T Consensus 226 p~~~~~l 232 (782)
T PRK00409 226 PQSVVEL 232 (782)
T ss_pred cHHHHHH
Confidence 3333433
No 39
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=90.83 E-value=5.1 Score=54.32 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=6.9
Q ss_pred cCCCCCCeeeccCC
Q 000064 277 YFPGPLPLVRLKPR 290 (2464)
Q Consensus 277 ~~~gplplvrl~~~ 290 (2464)
+|.-|..+|-||-+
T Consensus 217 ~~~ep~~~~~ln~~ 230 (771)
T TIGR01069 217 FYIEPQAIVKLNNK 230 (771)
T ss_pred EEEEcHHHHHHHHH
Confidence 44445555555443
No 40
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=90.64 E-value=0.98 Score=55.26 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=42.0
Q ss_pred CCCCCCCCCccccccCCCCCCCcCC---CCCCccccccccc---ccccccccccccccccccccccCCCcccccCCCCch
Q 000064 913 RHPRVLPPPTLTSMQKPSYRRENEC---PSPSTFQENEVEY---NRLLRSESISLAGLDRSEQHNLAQPEIIDVQPESTE 986 (2464)
Q Consensus 913 RqPRVlPPP~~~s~~r~s~~~~~~~---p~pstf~~~~~~~---~~~~r~e~~~~~~y~~~~~~~~~~~~~i~~~~~~a~ 986 (2464)
+-||-++||+.+.+-++ ..|++-. |+-|+....-+-- -.-.-.-+..-++|.++||+...|-- +|
T Consensus 399 gcP~~ie~~VpmPsPl~-S~GsslspS~~ASSSlt~~pcSSPV~~k~llGssaSSp~~qssyqvginqrf-------ha- 469 (561)
T KOG1103|consen 399 GCPRAIEPAVPMPSPLM-SIGSSLSPSLPASSSLTPRPCSSPVKKKPLLGSSASSPAVQSSYQVGINQRF-------HA- 469 (561)
T ss_pred CCCCCCCCCCCCCCccc-ccccccCCCCcccccCCCCCCCCccccccccccccCChhhhhhhhhcchhhh-------hh-
Confidence 56888888888887773 3443332 2222222111100 00000113345678888885444322 11
Q ss_pred hhhccccccccCccCCCcccccccC
Q 000064 987 NEEQNLERSTTSRCDSQSSLSVSSA 1011 (2464)
Q Consensus 987 ~E~q~~d~~~t~~~dsQsSLSvssp 1011 (2464)
--|++- ++.-.|-|+|.-.|+|
T Consensus 470 -aRhkf~--aqad~dqqasgl~sp~ 491 (561)
T KOG1103|consen 470 -ARHKFA--AQADMDQQASGLNSPA 491 (561)
T ss_pred -ccchhh--hcccCcccccccCCCc
Confidence 123333 4566677777666554
No 41
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.63 E-value=9.5 Score=48.75 Aligned_cols=8 Identities=38% Similarity=0.331 Sum_probs=3.5
Q ss_pred cccCCCCC
Q 000064 787 DAENGHYS 794 (2464)
Q Consensus 787 d~eN~~~s 794 (2464)
|+.|+.++
T Consensus 358 dhG~gy~s 365 (420)
T COG4942 358 DHGGGYHS 365 (420)
T ss_pred EcCCccEE
Confidence 44444433
No 42
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=2 Score=51.89 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCcCCC
Q 000064 798 DSAFGGRAVPRKEFY 812 (2464)
Q Consensus 798 Ds~fG~rspprK~f~ 812 (2464)
|++-=|+.|||+.|.
T Consensus 249 ~P~~f~t~fPR~tf~ 263 (290)
T KOG2689|consen 249 DPYSFHTGFPRVTFT 263 (290)
T ss_pred CCeeeecCCCceecc
Confidence 555567778887765
No 43
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=89.42 E-value=1 Score=57.90 Aligned_cols=9 Identities=22% Similarity=0.493 Sum_probs=3.9
Q ss_pred cccCCCCCC
Q 000064 876 WGQGRYRGN 884 (2464)
Q Consensus 876 W~qs~s~gr 884 (2464)
|+...+.++
T Consensus 460 w~~~~~e~~ 468 (492)
T PF02029_consen 460 WLTKTPEGS 468 (492)
T ss_pred hhcCCCCCC
Confidence 444444444
No 44
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=88.04 E-value=20 Score=42.66 Aligned_cols=24 Identities=25% Similarity=0.130 Sum_probs=14.4
Q ss_pred ccccCCCC-CCCCCCc-cchhhhHHh
Q 000064 529 MKDFGSSS-FDGRDPF-SAGLVGVVK 552 (2464)
Q Consensus 529 ldDfGAsg-fdG~DP~-~~~Mle~VK 552 (2464)
.+-||..| ..|-||- .+...+.+.
T Consensus 63 Rk~fGRYG~aSgV~P~~lwPt~eele 88 (217)
T PF10147_consen 63 RKLFGRYGLASGVDPGILWPTPEELE 88 (217)
T ss_pred HHHHHhhhhhcCCChhhhCCCHHHHH
Confidence 34688888 6677776 344444443
No 45
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=87.39 E-value=32 Score=43.75 Aligned_cols=7 Identities=57% Similarity=0.857 Sum_probs=4.2
Q ss_pred CCCCCCc
Q 000064 537 FDGRDPF 543 (2464)
Q Consensus 537 fdG~DP~ 543 (2464)
|+|.|..
T Consensus 142 F~GEDl~ 148 (379)
T PF05914_consen 142 FDGEDLN 148 (379)
T ss_pred cccccCC
Confidence 4566665
No 46
>PLN02316 synthase/transferase
Probab=87.15 E-value=12 Score=52.48 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=10.1
Q ss_pred CCcccccccCCCC--ccccccc
Q 000064 767 FNSWRRDAFESGN--SSTFITQ 786 (2464)
Q Consensus 767 inSWrR~~flrd~--sS~FiPq 786 (2464)
.+.|=+.-|.||. .+.|.|+
T Consensus 508 ~ev~~~g~~NrWth~~~~~~~~ 529 (1036)
T PLN02316 508 PEVWFRGSFNRWTHRLGPLPPQ 529 (1036)
T ss_pred ceEEEEccccCcCCCCCCCCce
Confidence 3445555666665 2345544
No 47
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=87.04 E-value=1.4 Score=55.53 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=5.7
Q ss_pred ccchhcccccc
Q 000064 859 MESDFHENITE 869 (2464)
Q Consensus 859 ~dsdf~en~~E 869 (2464)
+-+.|-.+|.+
T Consensus 423 ~~s~f~~~f~w 433 (506)
T KOG2507|consen 423 RVSSFANPFSW 433 (506)
T ss_pred HHHHHhccCCC
Confidence 44556666533
No 48
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=86.96 E-value=12 Score=47.07 Aligned_cols=13 Identities=8% Similarity=-0.041 Sum_probs=7.9
Q ss_pred cccCCCCCCccCC
Q 000064 751 QFARDNSSGFLDR 763 (2464)
Q Consensus 751 ~tSr~~dSs~LDR 763 (2464)
+.|.+.|+++++.
T Consensus 408 pnp~pidp~~lee 420 (442)
T PF06637_consen 408 PNPPPIDPASLEE 420 (442)
T ss_pred CCCCCCChHHHHH
Confidence 4556677666654
No 49
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=86.50 E-value=29 Score=47.68 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=20.5
Q ss_pred ccccCCCCCCCCCCCCCCC--CCccccccCcCCccccccccccccccCCC
Q 000064 318 AYWEGDFDMPRPSVLPHKP--AHNVFERWGQRDSETGKVSSSEVARVDPF 365 (2464)
Q Consensus 318 ~~w~~~fd~p~~~~~p~k~--~~~~~~~~g~r~~e~~k~~~~e~~~~~~~ 365 (2464)
+-|+++-=.++--|||--. --.+| +|-||+.---+.-||-.
T Consensus 752 pvy~eepfvF~KVvLpeLA~lRiavy-------eEggK~ig~RIlpvd~l 794 (1189)
T KOG1265|consen 752 PVYEEEPFVFRKVVLPELASLRIAVY-------EEGGKFIGQRILPVDGL 794 (1189)
T ss_pred cccccCCcccceecccchhheeeeee-------ccCCceeeeeccchhcc
Confidence 4566553334455777321 11223 46667666556555543
No 50
>PTZ00491 major vault protein; Provisional
Probab=86.30 E-value=3.9 Score=55.44 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCCCCCCCc
Q 000064 497 GRGFPHNDPMHNFSRDKRP 515 (2464)
Q Consensus 497 ~kGlL~NdpllNFGRDkRl 515 (2464)
.+|+.-..++-.||.....
T Consensus 583 IR~aVA~~~Fd~FHknsa~ 601 (850)
T PTZ00491 583 VRAAVASEPFDEFHKNSAK 601 (850)
T ss_pred HHHHHhcCCHHHHhccHHH
Confidence 5666666666666665433
No 51
>PTZ00491 major vault protein; Provisional
Probab=86.29 E-value=17 Score=49.81 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=6.6
Q ss_pred CCcccccCCCC
Q 000064 150 DGVGVYVPPSV 160 (2464)
Q Consensus 150 ~~~~~~~~~s~ 160 (2464)
++.|.|+|..-
T Consensus 198 t~~gaylP~v~ 208 (850)
T PTZ00491 198 RTPGAYLPGVF 208 (850)
T ss_pred eccccccCCCc
Confidence 44667776553
No 52
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.23 E-value=17 Score=47.97 Aligned_cols=7 Identities=29% Similarity=0.549 Sum_probs=2.8
Q ss_pred cccccCc
Q 000064 340 VFERWGQ 346 (2464)
Q Consensus 340 ~~~~~g~ 346 (2464)
+|.+-|+
T Consensus 95 v~t~Dg~ 101 (548)
T COG2268 95 VYTKDGM 101 (548)
T ss_pred eEecCCC
Confidence 3443343
No 53
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=86.14 E-value=18 Score=44.94 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=13.2
Q ss_pred cccccCCCCCCCcccc---ccCCCC
Q 000064 515 PLLKREEPYQDDPFMK---DFGSSS 536 (2464)
Q Consensus 515 l~~K~mkPf~ED~fld---DfGAsg 536 (2464)
...+|-+-...|||+. ||.-++
T Consensus 48 iE~kYGK~NinDP~~ALqRDf~~l~ 72 (561)
T KOG1103|consen 48 IEAKYGKLNINDPFAALQRDFAILG 72 (561)
T ss_pred HHHhhcccccCChHHHHHHHHHHHh
Confidence 3445666666677664 666655
No 54
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=85.84 E-value=41 Score=44.10 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=7.0
Q ss_pred ccccCCCCCCCCCCCC
Q 000064 318 AYWEGDFDMPRPSVLP 333 (2464)
Q Consensus 318 ~~w~~~fd~p~~~~~p 333 (2464)
+||+..|+-.-...+|
T Consensus 26 A~~n~~f~d~f~~~vP 41 (582)
T PF09731_consen 26 AKQNDNFRDFFEEYVP 41 (582)
T ss_pred hhcChHHHHHHHHhCC
Confidence 3455555433333345
No 55
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=85.58 E-value=20 Score=45.42 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=9.1
Q ss_pred ccccccCCCCchhhhcc
Q 000064 189 LQAALPAASGSEKKQKD 205 (2464)
Q Consensus 189 l~a~lp~~~~~~~k~k~ 205 (2464)
|||..|+--+++.|-|+
T Consensus 82 lqagtpplqVnEEk~~a 98 (672)
T KOG4722|consen 82 LQAGTPPLQVNEEKEKA 98 (672)
T ss_pred HhcCCCCCCCchhhccc
Confidence 45555655555554443
No 56
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=85.43 E-value=31 Score=43.80 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=6.4
Q ss_pred hhhHHhhhhhhccc
Q 000064 547 LVGVVKKKKDVLKQ 560 (2464)
Q Consensus 547 Mle~VKKKKEeaKq 560 (2464)
+...++.++++.+.
T Consensus 79 i~~qlr~~rtel~~ 92 (499)
T COG4372 79 IRPQLRALRTELGT 92 (499)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555554443
No 57
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=85.09 E-value=15 Score=45.73 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=8.3
Q ss_pred cCCCcccccCCCCCCccCC
Q 000064 745 DMSSRNQFARDNSSGFLDR 763 (2464)
Q Consensus 745 ~mg~Rv~tSr~~dSs~LDR 763 (2464)
+.+-+.|.+--..++..||
T Consensus 291 ~v~g~~~p~k~~~~sk~dr 309 (361)
T KOG3634|consen 291 EVTGRWKPPKVQISSKYDR 309 (361)
T ss_pred hhcCCCCCceeehhhhhhh
Confidence 3444444444444444444
No 58
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.71 E-value=27 Score=49.76 Aligned_cols=7 Identities=0% Similarity=-0.121 Sum_probs=2.7
Q ss_pred CCCCCCc
Q 000064 509 FSRDKRP 515 (2464)
Q Consensus 509 FGRDkRl 515 (2464)
-+.+|..
T Consensus 568 ~dL~P~l 574 (1201)
T PF12128_consen 568 TDLEPQL 574 (1201)
T ss_pred CCCCCee
Confidence 3334333
No 59
>PLN02316 synthase/transferase
Probab=84.67 E-value=9.4 Score=53.40 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=4.4
Q ss_pred hhHhhhccc
Q 000064 267 RSEQVRKQE 275 (2464)
Q Consensus 267 ~~e~~rk~~ 275 (2464)
+.|+.||+.
T Consensus 120 ~~~~~~~~~ 128 (1036)
T PLN02316 120 ERENLRKRE 128 (1036)
T ss_pred hHHHHHHHH
Confidence 344555554
No 60
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=84.02 E-value=2 Score=54.18 Aligned_cols=8 Identities=50% Similarity=0.953 Sum_probs=3.7
Q ss_pred CCCCcCCC
Q 000064 805 AVPRKEFY 812 (2464)
Q Consensus 805 spprK~f~ 812 (2464)
.|||++|.
T Consensus 360 pyPRReft 367 (506)
T KOG2507|consen 360 PYPRREFT 367 (506)
T ss_pred cccccccc
Confidence 34454443
No 61
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=83.84 E-value=13 Score=51.57 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=36.0
Q ss_pred cCCCCCCccCCCccccccccccCCCccccccccCCCCchh--hhcccch---hHhhhcccccccccccCCCCCCCc
Q 000064 162 SGTVGPALSSFAPAEKASVLRGEDFPSLQAALPAASGSEK--KQKDGFS---QKQKQGMSQELGNNEQKDGCRFNA 232 (2464)
Q Consensus 162 ~~~~~~~~~~~~~~ek~~vlrgedfpsl~a~lp~~~~~~~--k~k~~~~---qk~kq~~~~~~~~~e~~~~~~~~~ 232 (2464)
+|.++|-...|..+|+-+ --+|+.|-+++++.. ++-...- .||-|.+-+.|..-|.+-.+-.++
T Consensus 1193 tGv~gay~s~f~~me~kl-------~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~ 1261 (1758)
T KOG0994|consen 1193 TGVLGAYASRFLDMEEKL-------EEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNS 1261 (1758)
T ss_pred ccCchhhHhHHHHHHHHH-------HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Confidence 566666555555554332 124566656666555 2322222 377788888888777665554443
No 62
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=83.69 E-value=13 Score=49.37 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=8.5
Q ss_pred ccCCCcccccccc
Q 000064 182 RGEDFPSLQAALP 194 (2464)
Q Consensus 182 rgedfpsl~a~lp 194 (2464)
-|+-|-++|++.+
T Consensus 472 ~G~~~~s~qs~~s 484 (1187)
T KOG0579|consen 472 QGSTFFSPQSSAS 484 (1187)
T ss_pred cCccccCccccCC
Confidence 4666667777663
No 63
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.10 E-value=64 Score=41.72 Aligned_cols=9 Identities=11% Similarity=0.198 Sum_probs=3.8
Q ss_pred hHHhhhhhh
Q 000064 549 GVVKKKKDV 557 (2464)
Q Consensus 549 e~VKKKKEe 557 (2464)
.++++|..+
T Consensus 225 ~flerkv~e 233 (502)
T KOG0982|consen 225 RFLERKVQE 233 (502)
T ss_pred HHHHHHHHH
Confidence 344444433
No 64
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=82.21 E-value=38 Score=47.61 Aligned_cols=9 Identities=22% Similarity=0.420 Sum_probs=4.0
Q ss_pred cccchhccc
Q 000064 722 GERMVERIT 730 (2464)
Q Consensus 722 sERmvDrI~ 730 (2464)
.+++++.|+
T Consensus 1740 ~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1740 VESVLDHIN 1748 (1758)
T ss_pred HHHHHHHHh
Confidence 344444443
No 65
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=81.99 E-value=12 Score=46.51 Aligned_cols=8 Identities=38% Similarity=0.231 Sum_probs=4.1
Q ss_pred Cccccccc
Q 000064 779 NSSTFITQ 786 (2464)
Q Consensus 779 ~sS~FiPq 786 (2464)
.+++|-+|
T Consensus 303 ~~sk~drq 310 (361)
T KOG3634|consen 303 ISSKYDRQ 310 (361)
T ss_pred hhhhhhhH
Confidence 35555544
No 66
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=81.61 E-value=36 Score=50.50 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=4.8
Q ss_pred CCccccccc
Q 000064 185 DFPSLQAAL 193 (2464)
Q Consensus 185 dfpsl~a~l 193 (2464)
||.-|....
T Consensus 302 ~Y~f~~~~~ 310 (1930)
T KOG0161|consen 302 DYKFLSNGE 310 (1930)
T ss_pred hhhhhcccc
Confidence 555555544
No 67
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=81.51 E-value=1.1e+02 Score=42.47 Aligned_cols=9 Identities=22% Similarity=0.091 Sum_probs=4.0
Q ss_pred CCccccccC
Q 000064 525 DDPFMKDFG 533 (2464)
Q Consensus 525 ED~fldDfG 533 (2464)
.+.|..+++
T Consensus 311 ~~~~~~~~~ 319 (980)
T KOG0980|consen 311 LDLFEAEPA 319 (980)
T ss_pred ccccccCcc
Confidence 344444444
No 68
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=81.18 E-value=57 Score=45.12 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=8.1
Q ss_pred ccccCcCCccccccccccc
Q 000064 341 FERWGQRDSETGKVSSSEV 359 (2464)
Q Consensus 341 ~~~~g~r~~e~~k~~~~e~ 359 (2464)
|-++--++|-.--|+..|+
T Consensus 740 ~rtrt~~~n~~npvy~eep 758 (1189)
T KOG1265|consen 740 FRTRTVQGNSFNPVYEEEP 758 (1189)
T ss_pred hhhccccCCCCCcccccCC
Confidence 4434344444444444433
No 69
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=81.08 E-value=64 Score=41.74 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=5.7
Q ss_pred ccccccCccccC
Q 000064 836 FTVSRGQRWNMS 847 (2464)
Q Consensus 836 Yr~~~p~rWnip 847 (2464)
-...-..+|.-+
T Consensus 253 ~~~~~~~rws~~ 264 (445)
T PRK13428 253 LRTAVSQRWSAN 264 (445)
T ss_pred HHHHHhCccCcc
Confidence 334445556444
No 70
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=81.01 E-value=42 Score=49.91 Aligned_cols=11 Identities=9% Similarity=-0.197 Sum_probs=6.4
Q ss_pred ccCCCCCCCCC
Q 000064 253 RENGGINHDTG 263 (2464)
Q Consensus 253 ~~~~~~~~~~g 263 (2464)
+-++-..|.+.
T Consensus 454 DiaGFEIfe~n 464 (1930)
T KOG0161|consen 454 DIAGFEIFEFN 464 (1930)
T ss_pred eeccccccCcC
Confidence 55566666554
No 71
>PRK12472 hypothetical protein; Provisional
Probab=80.24 E-value=20 Score=46.68 Aligned_cols=10 Identities=0% Similarity=-0.489 Sum_probs=7.5
Q ss_pred ccCccccccc
Q 000064 469 QYGSEQYNRF 478 (2464)
Q Consensus 469 ~ygi~QygrY 478 (2464)
.|+||..+|+
T Consensus 122 GiaIHGt~~p 131 (508)
T PRK12472 122 GIALHGGPLP 131 (508)
T ss_pred eEEEecCCCC
Confidence 5788888775
No 72
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=78.74 E-value=55 Score=44.41 Aligned_cols=14 Identities=14% Similarity=0.076 Sum_probs=7.1
Q ss_pred CCccccCCCccccc
Q 000064 740 LHRSFDMSSRNQFA 753 (2464)
Q Consensus 740 ~eds~~mg~Rv~tS 753 (2464)
+.+.++++.|+-.+
T Consensus 686 v~rl~ragrrvgi~ 699 (828)
T PF04094_consen 686 VSRLERAGRRVGIS 699 (828)
T ss_pred HHHHHhhccccccc
Confidence 34445555555443
No 73
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=78.69 E-value=9 Score=49.52 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=4.2
Q ss_pred CCCCCCCCCCC
Q 000064 501 PHNDPMHNFSR 511 (2464)
Q Consensus 501 L~NdpllNFGR 511 (2464)
|++.....|=+
T Consensus 205 L~~e~v~~~l~ 215 (460)
T KOG1363|consen 205 LCNEAVVDYLR 215 (460)
T ss_pred hhhHHHHHHHh
Confidence 34433333333
No 74
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=78.49 E-value=78 Score=40.86 Aligned_cols=15 Identities=27% Similarity=0.250 Sum_probs=7.4
Q ss_pred cCccCCCcccccccC
Q 000064 997 TSRCDSQSSLSVSSA 1011 (2464)
Q Consensus 997 t~~~dsQsSLSvssp 1011 (2464)
+-+|.|=.+-.|=||
T Consensus 383 g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSP 397 (459)
T ss_pred ccccccccceeEECC
Confidence 444555445455454
No 75
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=78.07 E-value=45 Score=48.34 Aligned_cols=6 Identities=33% Similarity=0.529 Sum_probs=2.7
Q ss_pred cccccc
Q 000064 349 SETGKV 354 (2464)
Q Consensus 349 ~e~~k~ 354 (2464)
|-.||.
T Consensus 33 NGsGKS 38 (1353)
T TIGR02680 33 NGAGKS 38 (1353)
T ss_pred CCCcHH
Confidence 335553
No 76
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=77.82 E-value=98 Score=39.63 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=7.4
Q ss_pred CCCCcccccCCCCC
Q 000064 511 RDKRPLLKREEPYQ 524 (2464)
Q Consensus 511 RDkRl~~K~mkPf~ 524 (2464)
-|++....+|+.|.
T Consensus 130 ~d~~~G~Ss~Q~F~ 143 (379)
T PF05914_consen 130 DDPRCGPSSLQKFD 143 (379)
T ss_pred cCCccCchhccccc
Confidence 34555555555554
No 77
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=77.51 E-value=20 Score=44.11 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=5.9
Q ss_pred CCCccccccCcCC
Q 000064 336 PAHNVFERWGQRD 348 (2464)
Q Consensus 336 ~~~~~~~~~g~r~ 348 (2464)
|++-.||+|=-|+
T Consensus 3 ~~NiM~D~RV~RG 15 (291)
T PF06098_consen 3 YGNIMYDRRVVRG 15 (291)
T ss_pred cccccCCCCcCCC
Confidence 4444555443333
No 78
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.02 E-value=55 Score=43.82 Aligned_cols=9 Identities=33% Similarity=0.553 Sum_probs=3.6
Q ss_pred CCCCccchh
Q 000064 539 GRDPFSAGL 547 (2464)
Q Consensus 539 G~DP~~~~M 547 (2464)
-+|.....+
T Consensus 343 ~RDALAAA~ 351 (652)
T COG2433 343 ERDALAAAY 351 (652)
T ss_pred HHHHHHHHH
Confidence 344443333
No 79
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.12 E-value=43 Score=45.74 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=4.6
Q ss_pred CcccccccccC
Q 000064 81 PSLRKEHERFD 91 (2464)
Q Consensus 81 pslrkehe~~d 91 (2464)
|-+.-.|-.+-
T Consensus 83 ~~f~v~~i~~n 93 (717)
T PF10168_consen 83 PLFEVHQISLN 93 (717)
T ss_pred CceeEEEEEEC
Confidence 33444444433
No 80
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=74.31 E-value=88 Score=42.67 Aligned_cols=8 Identities=13% Similarity=0.015 Sum_probs=3.8
Q ss_pred cccCCccc
Q 000064 477 RFRGDAFQ 484 (2464)
Q Consensus 477 rYrG~A~Q 484 (2464)
.|+|++++
T Consensus 343 ~s~gGps~ 350 (828)
T PF04094_consen 343 TSIGGPSR 350 (828)
T ss_pred CCCCCccc
Confidence 34455544
No 81
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=73.89 E-value=36 Score=48.18 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=5.7
Q ss_pred ccCccccccccCCcc
Q 000064 469 QYGSEQYNRFRGDAF 483 (2464)
Q Consensus 469 ~ygi~QygrYrG~A~ 483 (2464)
++.+.|.- |.|-.|
T Consensus 389 ~f~Gn~LP-FIGfTy 402 (1317)
T KOG0612|consen 389 AFSGNHLP-FIGFTY 402 (1317)
T ss_pred CCcCCcCC-eeeeee
Confidence 44444333 444443
No 82
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=73.84 E-value=60 Score=44.28 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=9.2
Q ss_pred CCccccCCCCCCCccc
Q 000064 69 VPKLSVPPPLNLPSLR 84 (2464)
Q Consensus 69 ~~klsvp~plnlpslr 84 (2464)
--|-|--.|+| |-++
T Consensus 229 elkrSTel~in-PD~~ 243 (1424)
T KOG4572|consen 229 ELKRSTELPIN-PDEK 243 (1424)
T ss_pred hhccccccCCC-CCCc
Confidence 55566666777 5544
No 83
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=73.79 E-value=1.3e+02 Score=37.86 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=7.3
Q ss_pred CCCCCcccccccc
Q 000064 376 GREGNMWRASSSL 388 (2464)
Q Consensus 376 g~e~nsWR~sspl 388 (2464)
|+.-++|+..+.+
T Consensus 53 gr~r~~~~lr~~~ 65 (340)
T KOG3756|consen 53 GRGRGSLLLRRGF 65 (340)
T ss_pred cchhhhhhhhhhh
Confidence 4445566666554
No 84
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=73.47 E-value=1.9e+02 Score=38.95 Aligned_cols=9 Identities=11% Similarity=-0.164 Sum_probs=3.4
Q ss_pred cCCCCCCcc
Q 000064 753 ARDNSSGFL 761 (2464)
Q Consensus 753 Sr~~dSs~L 761 (2464)
|+.+.+.+|
T Consensus 497 ~~~l~~~~l 505 (546)
T PF07888_consen 497 PQPLGHYSL 505 (546)
T ss_pred cCCCCCcCc
Confidence 333333333
No 85
>PRK04863 mukB cell division protein MukB; Provisional
Probab=72.53 E-value=1e+02 Score=45.35 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=7.0
Q ss_pred CCCCCCCCceee
Q 000064 1288 SLIPSPFPAIQI 1299 (2464)
Q Consensus 1288 sLipspvPAIQI 1299 (2464)
.+.+.|=|+|+-
T Consensus 830 ~f~~~pe~~~~~ 841 (1486)
T PRK04863 830 AFEADPEAELRQ 841 (1486)
T ss_pred hcCCCcHHHHHH
Confidence 456666666653
No 86
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.97 E-value=1.4e+02 Score=42.20 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCccc
Q 000064 504 DPMHNFSRDKRPLL 517 (2464)
Q Consensus 504 dpllNFGRDkRl~~ 517 (2464)
+.+....+|++..-
T Consensus 632 d~AKkVaf~~~i~~ 645 (1174)
T KOG0933|consen 632 DVAKKVAFDPKIRT 645 (1174)
T ss_pred HHHHHhhccccccc
Confidence 34455556655544
No 87
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=71.78 E-value=53 Score=42.68 Aligned_cols=7 Identities=29% Similarity=-0.036 Sum_probs=3.5
Q ss_pred ccCCccc
Q 000064 478 FRGDAFQ 484 (2464)
Q Consensus 478 YrG~A~Q 484 (2464)
|+-..||
T Consensus 261 ~il~ff~ 267 (446)
T PF07227_consen 261 AILQFFQ 267 (446)
T ss_pred HHHHHHh
Confidence 4444555
No 88
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=71.60 E-value=50 Score=44.74 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=9.5
Q ss_pred cCCCCCCCCCcc
Q 000064 912 MRHPRVLPPPTL 923 (2464)
Q Consensus 912 mRqPRVlPPP~~ 923 (2464)
||++-|+++|.-
T Consensus 440 ~~~~~~~~~p~~ 451 (916)
T KOG0249|consen 440 MDRMGVMTLPSD 451 (916)
T ss_pred ccCCccccCccc
Confidence 688899998843
No 89
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=70.54 E-value=1.4e+02 Score=41.51 Aligned_cols=7 Identities=29% Similarity=0.653 Sum_probs=4.1
Q ss_pred Ccccccc
Q 000064 779 NSSTFIT 785 (2464)
Q Consensus 779 ~sS~FiP 785 (2464)
+.-+|+|
T Consensus 573 gr~tflp 579 (1164)
T TIGR02169 573 GRATFLP 579 (1164)
T ss_pred CCeeecc
Confidence 3556666
No 90
>PRK04863 mukB cell division protein MukB; Provisional
Probab=68.37 E-value=1.7e+02 Score=43.39 Aligned_cols=7 Identities=57% Similarity=0.776 Sum_probs=4.0
Q ss_pred cccccce
Q 000064 1892 LLAGEKI 1898 (2464)
Q Consensus 1892 LLAgekI 1898 (2464)
|=-||||
T Consensus 1366 lSgGE~~ 1372 (1486)
T PRK04863 1366 LSTGEAI 1372 (1486)
T ss_pred CCcchhH
Confidence 4457773
No 91
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=67.94 E-value=1.9e+02 Score=39.15 Aligned_cols=9 Identities=56% Similarity=0.962 Sum_probs=5.1
Q ss_pred ccccccccC
Q 000064 187 PSLQAALPA 195 (2464)
Q Consensus 187 psl~a~lp~ 195 (2464)
|++.+.||.
T Consensus 47 p~~~~~l~~ 55 (594)
T PF05667_consen 47 PSLGSSLPR 55 (594)
T ss_pred ccccCCCcc
Confidence 555555554
No 92
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.11 E-value=1e+02 Score=42.88 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=20.7
Q ss_pred cccCCCCCCcccccCCCCCCCCCCCCCCCCCccccccCc-CCcccc
Q 000064 308 DRDHGFSKSEAYWEGDFDMPRPSVLPHKPAHNVFERWGQ-RDSETG 352 (2464)
Q Consensus 308 ~rd~gfsk~e~~w~~~fd~p~~~~~p~k~~~~~~~~~g~-r~~e~~ 352 (2464)
|+..|--+.--|++- .+++.+|-|.-| |.-|.+
T Consensus 46 GKNnGsVqg~qYF~C------------d~ncG~FVr~sq~r~lEda 79 (1243)
T KOG0971|consen 46 GKNNGSVQGVQYFEC------------DENCGVFVRSSQVRELEDA 79 (1243)
T ss_pred CCCCCcccceeeEec------------CCCcceEeehhhhHHhhcc
Confidence 466666666667543 246678887777 666554
No 93
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=66.50 E-value=2.1e+02 Score=37.19 Aligned_cols=9 Identities=67% Similarity=0.951 Sum_probs=4.0
Q ss_pred Hhhhhhhcc
Q 000064 551 VKKKKDVLK 559 (2464)
Q Consensus 551 VKKKKEeaK 559 (2464)
||+++|+.+
T Consensus 281 VRk~kE~L~ 289 (672)
T KOG4722|consen 281 VRKKKEALK 289 (672)
T ss_pred HHHHHHHHH
Confidence 344444433
No 94
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.24 E-value=84 Score=44.78 Aligned_cols=6 Identities=33% Similarity=1.149 Sum_probs=2.7
Q ss_pred cccccc
Q 000064 904 SFGRSR 909 (2464)
Q Consensus 904 sfgR~R 909 (2464)
.||+.|
T Consensus 731 aygk~r 736 (1293)
T KOG0996|consen 731 AYGKDR 736 (1293)
T ss_pred hhcCCC
Confidence 444444
No 95
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=66.10 E-value=3.1e+02 Score=35.87 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=10.7
Q ss_pred cCCcccccCCCCCCCCCCCCC
Q 000064 871 YGDVGWGQGRYRGNVHPPYPD 891 (2464)
Q Consensus 871 fGD~gW~qs~s~grp~PP~~~ 891 (2464)
||..=.++..+|+..+|.-..
T Consensus 478 ~g~~llA~r~sH~s~~~t~~~ 498 (552)
T KOG2129|consen 478 PGHRLLAERRSHGSSPPTVVV 498 (552)
T ss_pred CchhHHHHHHhcCCCCcchhh
Confidence 344444556666665554333
No 96
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=65.66 E-value=22 Score=45.05 Aligned_cols=10 Identities=40% Similarity=0.644 Sum_probs=5.0
Q ss_pred CCCCCCccCC
Q 000064 754 RDNSSGFLDR 763 (2464)
Q Consensus 754 r~~dSs~LDR 763 (2464)
..++|.|.++
T Consensus 413 ~g~dSg~~~d 422 (506)
T KOG2441|consen 413 KGLDSGFADD 422 (506)
T ss_pred cCcccccccc
Confidence 3445555554
No 97
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=64.51 E-value=1.6e+02 Score=35.96 Aligned_cols=82 Identities=32% Similarity=0.662 Sum_probs=45.5
Q ss_pred CCCCCcccccCCCCCCccCCCCCccccCCCCCCCCcCcccccccCCCCCCCCCcCCcccccC---CCCCCCCCCCcCCCC
Q 000064 2215 TNLPAPIQHLAPGSPLLPLASPLAMFDVSPFQPPSDMSVQARWSHVPAPPLQSVPMSMPLQR---PTDGVLPSQFNHGTS 2291 (2464)
Q Consensus 2215 ~~~p~~~qhl~pg~~~~p~~sp~~mfd~~pfq~~~~m~~q~~w~h~p~~p~~~~p~s~~~~q---~~~~~~~~q~~~~~~ 2291 (2464)
+-|| |-|=-||.+-||=.-+++-||- . +--.||. +|...||-.-|+-. ++++-++.-+|.+.
T Consensus 187 p~mp--i~~g~p~~~p~pg~p~~s~~~~----~----~~~~r~~----~p~~~vp~~pp~~~~~~~~~~q~~~~~~qg~- 251 (341)
T KOG2893|consen 187 PRMP--IGHGPPGGPPMPGPPQRSRFDQ----P----DGGDRWG----PPMRGVPRTPPYENEHEHQDYQAPDDYNQGG- 251 (341)
T ss_pred CcCc--CCCCCCCCCCCCCCCccccccC----C----CCCCCCC----CCcCCCCCCCCcCCcccccccccchhhhcCC-
Confidence 3466 6777777777776677777753 1 1125775 45555555444433 12444444455444
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCcc
Q 000064 2292 ADQSSASNRFPESRNSTPSDSSQNFH 2317 (2464)
Q Consensus 2292 ~d~~~~~~rf~~~~~s~~~~~~~~f~ 2317 (2464)
-..||.+..-+++.. -..|+
T Consensus 252 -----~~~~fr~~~r~~p~~-~s~~~ 271 (341)
T KOG2893|consen 252 -----YDDRFREGDRGGPPG-GSRFD 271 (341)
T ss_pred -----ccccccccccCCCCC-CCCCC
Confidence 245788877666543 34464
No 98
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=64.24 E-value=1.3e+02 Score=39.14 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=7.7
Q ss_pred cCCCccccccccccccCC
Q 000064 408 RPSSLNREANKETKFMSS 425 (2464)
Q Consensus 408 RP~SRnRgaSk~Sky~sS 425 (2464)
+++.+.|....+|+-.++
T Consensus 97 ~~l~r~r~~~~~s~Le~~ 114 (429)
T PF12297_consen 97 RPLTRQRVQRHESKLEPS 114 (429)
T ss_pred cchhhhccccccCCCCcc
Confidence 444444444444433333
No 99
>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]
Probab=63.19 E-value=1.1e+02 Score=37.80 Aligned_cols=14 Identities=14% Similarity=0.494 Sum_probs=5.5
Q ss_pred ccccCCCCCCcCCc
Q 000064 843 RWNMSGDGDHYGRN 856 (2464)
Q Consensus 843 rWnipGD~Dt~gr~ 856 (2464)
+|.-+-...-+|+.
T Consensus 311 RWE~~~P~K~~~~~ 324 (331)
T KOG2894|consen 311 RWEPYDPEKKWDKY 324 (331)
T ss_pred hCcCCCCccccchh
Confidence 34444333333333
No 100
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=62.97 E-value=31 Score=43.87 Aligned_cols=6 Identities=33% Similarity=0.075 Sum_probs=2.4
Q ss_pred CCCCCC
Q 000064 736 DSSGLH 741 (2464)
Q Consensus 736 DSss~e 741 (2464)
++.+..
T Consensus 416 dSg~~~ 421 (506)
T KOG2441|consen 416 DSGFAD 421 (506)
T ss_pred cccccc
Confidence 443333
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=62.32 E-value=3.2e+02 Score=35.74 Aligned_cols=8 Identities=38% Similarity=0.119 Sum_probs=3.6
Q ss_pred cccccccC
Q 000064 1004 SSLSVSSA 1011 (2464)
Q Consensus 1004 sSLSvssp 1011 (2464)
.+|.++++
T Consensus 354 ~~lLsssR 361 (459)
T KOG0288|consen 354 LELLSSSR 361 (459)
T ss_pred eEEeeecC
Confidence 34444444
No 102
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=61.52 E-value=20 Score=51.02 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=5.9
Q ss_pred CCCCCccccccc
Q 000064 376 GREGNMWRASSS 387 (2464)
Q Consensus 376 g~e~nsWR~ssp 387 (2464)
+-+-.+|-++..
T Consensus 1924 ~~~p~s~~a~~~ 1935 (2220)
T KOG3598|consen 1924 AAAPTSWNAPIA 1935 (2220)
T ss_pred hcCCccccccch
Confidence 344455655543
No 103
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=61.26 E-value=2.2e+02 Score=37.23 Aligned_cols=6 Identities=33% Similarity=0.850 Sum_probs=2.5
Q ss_pred cccccc
Q 000064 454 VHSFNS 459 (2464)
Q Consensus 454 msSws~ 459 (2464)
|..|..
T Consensus 132 v~nWT~ 137 (575)
T KOG4403|consen 132 VHNWTN 137 (575)
T ss_pred hhcchH
Confidence 444443
No 104
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=60.82 E-value=2.4e+02 Score=40.74 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=4.1
Q ss_pred CCCCCCcccc
Q 000064 916 RVLPPPTLTS 925 (2464)
Q Consensus 916 RVlPPP~~~s 925 (2464)
.|-|.-++|+
T Consensus 645 ~~~~~G~~tG 654 (1163)
T COG1196 645 LVEPSGSITG 654 (1163)
T ss_pred EEeCCeeeec
Confidence 3444443433
No 105
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.56 E-value=1.3e+02 Score=37.63 Aligned_cols=8 Identities=38% Similarity=0.804 Sum_probs=3.3
Q ss_pred CCCCCCcc
Q 000064 399 GDNRNGIC 406 (2464)
Q Consensus 399 gneR~Gig 406 (2464)
-|.|-.+|
T Consensus 144 hDsRiH~C 151 (406)
T KOG3859|consen 144 HDSRIHVC 151 (406)
T ss_pred ccCceEEE
Confidence 33444444
No 106
>PF15558 DUF4659: Domain of unknown function (DUF4659)
Probab=60.02 E-value=4.9e+02 Score=33.85 Aligned_cols=8 Identities=25% Similarity=0.596 Sum_probs=3.0
Q ss_pred ccchhhhc
Q 000064 701 SSGLAKER 708 (2464)
Q Consensus 701 aeq~kkEK 708 (2464)
.+.+..++
T Consensus 323 ~eqi~reK 330 (376)
T PF15558_consen 323 SEQISREK 330 (376)
T ss_pred HHHHHHHH
Confidence 33333333
No 107
>COG4499 Predicted membrane protein [Function unknown]
Probab=57.46 E-value=25 Score=44.72 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=14.4
Q ss_pred chhhhHHhhhhhhccccccCCcch
Q 000064 545 AGLVGVVKKKKDVLKQTDFHDPVR 568 (2464)
Q Consensus 545 ~~Mle~VKKKKEeaKq~E~EEklR 568 (2464)
+-|++++++.++..--...-...|
T Consensus 344 ~~~~Al~k~~eevksn~~lsg~~r 367 (434)
T COG4499 344 LTLLALTKLYEEVKSNTDLSGDKR 367 (434)
T ss_pred hHHHHHHHHHHHHhcccCCCchHH
Confidence 557788777776655444443333
No 108
>PRK03918 chromosome segregation protein; Provisional
Probab=56.79 E-value=3.8e+02 Score=36.98 Aligned_cols=7 Identities=43% Similarity=0.601 Sum_probs=4.6
Q ss_pred ccccccc
Q 000064 349 SETGKVS 355 (2464)
Q Consensus 349 ~e~~k~~ 355 (2464)
|-+||.+
T Consensus 32 nG~GKSt 38 (880)
T PRK03918 32 NGSGKSS 38 (880)
T ss_pred CCCCHHH
Confidence 6677755
No 109
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=56.32 E-value=3.1e+02 Score=38.25 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=13.9
Q ss_pred cccccCcCCccCC--ccccccccchh
Q 000064 1061 NMIAPASSISAGD--DEEWAVENDER 1084 (2464)
Q Consensus 1061 ~~~~~~s~vs~~~--d~ew~~~~~e~ 1084 (2464)
-+|+|-.-|+-+| .+-|.+.+---
T Consensus 812 grmnGwlRVyRdd~~~stwl~~wamm 837 (1265)
T KOG0976|consen 812 GRMNGWLRVYRDDAEASTWLLGWAMM 837 (1265)
T ss_pred hhcccceeeeccccchhHHHHHHHHh
Confidence 3566655555555 55677766544
No 110
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=54.70 E-value=4.1e+02 Score=36.64 Aligned_cols=10 Identities=10% Similarity=0.461 Sum_probs=4.0
Q ss_pred HHhhhhhhcc
Q 000064 550 VVKKKKDVLK 559 (2464)
Q Consensus 550 ~VKKKKEeaK 559 (2464)
+++.|.|...
T Consensus 447 eLaEkdE~I~ 456 (961)
T KOG4673|consen 447 ELAEKDEIIN 456 (961)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 111
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=53.64 E-value=3e+02 Score=38.29 Aligned_cols=7 Identities=29% Similarity=0.938 Sum_probs=3.8
Q ss_pred CCCcccc
Q 000064 291 SDWADDE 297 (2464)
Q Consensus 291 sdwadde 297 (2464)
-.||-+-
T Consensus 511 eEWaga~ 517 (1424)
T KOG4572|consen 511 EEWAGAH 517 (1424)
T ss_pred HHHHHhh
Confidence 4566553
No 112
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=53.61 E-value=4.1e+02 Score=37.20 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=9.4
Q ss_pred CCCCccccceeee
Q 000064 1534 PRRPRRQRTEFRV 1546 (2464)
Q Consensus 1534 ~R~~~~~rtefrv 1546 (2464)
.++.+--|||||-
T Consensus 1197 ~~tvlaeRt~l~c 1209 (1265)
T KOG0976|consen 1197 PHTVLAERTELRC 1209 (1265)
T ss_pred chhhhhhhhheee
Confidence 3457778899874
No 113
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=52.90 E-value=54 Score=43.06 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=5.8
Q ss_pred ccCCCccccccc
Q 000064 407 ERPSSLNREANK 418 (2464)
Q Consensus 407 vRP~SRnRgaSk 418 (2464)
+.|..-.|-+.+
T Consensus 326 ~~PFttkRPt~~ 337 (591)
T KOG2505|consen 326 TFPFTTKRPTIK 337 (591)
T ss_pred ccCCCCCCCchH
Confidence 455555554443
No 114
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=52.73 E-value=65 Score=41.85 Aligned_cols=20 Identities=45% Similarity=0.689 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCCCCCCce
Q 000064 36 HSGYYGSNRARPTGGGGGGM 55 (2464)
Q Consensus 36 ~~g~~~~~~~~~~~~~gggm 55 (2464)
++|+.+...+.+|+++||||
T Consensus 71 ~s~~g~~s~~~gg~~~~~g~ 90 (641)
T KOG3915|consen 71 GSGGGGGSSGNGGGGGGGGG 90 (641)
T ss_pred CCCCCccccCCCCCCCCCCC
Confidence 33343344444444555555
No 115
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=51.34 E-value=4.4e+02 Score=38.33 Aligned_cols=10 Identities=20% Similarity=0.534 Sum_probs=4.5
Q ss_pred hHHhhhhhhc
Q 000064 549 GVVKKKKDVL 558 (2464)
Q Consensus 549 e~VKKKKEea 558 (2464)
+.++++.+..
T Consensus 309 ~fL~kenel~ 318 (1293)
T KOG0996|consen 309 EFLKKENELF 318 (1293)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 116
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=51.08 E-value=3.9e+02 Score=38.52 Aligned_cols=23 Identities=48% Similarity=0.716 Sum_probs=12.9
Q ss_pred CCCCC-eeeccCCCCCccc-ccccCC
Q 000064 279 PGPLP-LVRLKPRSDWADD-ERDTGH 302 (2464)
Q Consensus 279 ~gplp-lvrl~~~sdwadd-erdtg~ 302 (2464)
-|||- +|.|.-- -||+- ||=-|+
T Consensus 496 ~GPlG~~Vtl~~~-KWa~aIE~~L~n 520 (1074)
T KOG0250|consen 496 KGPLGKYVTLKEP-KWALAIERCLGN 520 (1074)
T ss_pred CCCccceeEecCc-HHHHHHHHHHHH
Confidence 47764 5666544 78863 444343
No 117
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=48.91 E-value=4.9e+02 Score=36.25 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=5.5
Q ss_pred CCCCcccCCCCce
Q 000064 1493 KAQGLTSGSRGKR 1505 (2464)
Q Consensus 1493 k~~g~~sg~rgr~ 1505 (2464)
++-+++.-|+-||
T Consensus 823 eF~nLi~~gtdrr 835 (916)
T KOG0249|consen 823 EFNNLLALGTDRR 835 (916)
T ss_pred HHHhhhccccccc
Confidence 3344444444443
No 118
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=48.57 E-value=4.6e+02 Score=36.41 Aligned_cols=9 Identities=33% Similarity=1.095 Sum_probs=5.5
Q ss_pred CCccccccc
Q 000064 767 FNSWRRDAF 775 (2464)
Q Consensus 767 inSWrR~~f 775 (2464)
...||...|
T Consensus 308 L~~WREKVF 316 (739)
T PF07111_consen 308 LSRWREKVF 316 (739)
T ss_pred HHHHHHHHH
Confidence 455777655
No 119
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=47.47 E-value=6.1e+02 Score=34.07 Aligned_cols=11 Identities=45% Similarity=0.703 Sum_probs=5.5
Q ss_pred CCCCccchhhh
Q 000064 539 GRDPFSAGLVG 549 (2464)
Q Consensus 539 G~DP~~~~Mle 549 (2464)
-.||..+.=..
T Consensus 78 ~pDPLsPgE~~ 88 (508)
T PF00901_consen 78 PPDPLSPGEQG 88 (508)
T ss_pred CCCCCCHhHHH
Confidence 45666444333
No 120
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=46.76 E-value=6.8e+02 Score=36.77 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=5.7
Q ss_pred EEeeccCccccccCC
Q 000064 56 LVLSRPRSSQKAAVP 70 (2464)
Q Consensus 56 ~vlsr~r~~~~~~~~ 70 (2464)
|-|-|-+++.++-++
T Consensus 91 V~lVr~k~t~~VYAM 105 (1317)
T KOG0612|consen 91 VALVRHKSTEKVYAM 105 (1317)
T ss_pred eEEEEeeccccchhH
Confidence 333333333333333
No 121
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=46.58 E-value=2.2e+02 Score=37.46 Aligned_cols=13 Identities=15% Similarity=-0.008 Sum_probs=5.1
Q ss_pred CccccccCcCCcc
Q 000064 338 HNVFERWGQRDSE 350 (2464)
Q Consensus 338 ~~~~~~~g~r~~e 350 (2464)
|.-+.--|-|.+-
T Consensus 154 H~cH~dCALr~~~ 166 (446)
T PF07227_consen 154 HWCHLDCALRHEL 166 (446)
T ss_pred ceehhhhhccccc
Confidence 3333333444443
No 122
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=44.37 E-value=6e+02 Score=36.84 Aligned_cols=16 Identities=13% Similarity=0.009 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCCCC
Q 000064 435 SGRRDIDYGPGGRQPW 450 (2464)
Q Consensus 435 tGgRDSg~g~~grQP~ 450 (2464)
..+++-.++....++|
T Consensus 557 ~~~~~y~~~~~p~~~~ 572 (1074)
T KOG0250|consen 557 FTPFDYSVGRNPGYEF 572 (1074)
T ss_pred CCccccccccCCCCCC
Confidence 4444444444444433
No 123
>PLN03188 kinesin-12 family protein; Provisional
Probab=44.34 E-value=5.1e+02 Score=38.11 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=9.6
Q ss_pred ccCCCccccccccccccCCC
Q 000064 407 ERPSSLNREANKETKFMSSP 426 (2464)
Q Consensus 407 vRP~SRnRgaSk~Sky~sSp 426 (2464)
+.|++..=.+...+..-.+|
T Consensus 671 ~~~~~lsi~p~~~~~~l~~p 690 (1320)
T PLN03188 671 ASPSSLSIVPVEVSPVLKSP 690 (1320)
T ss_pred CCccccccccccccccccCC
Confidence 45555555555554443333
No 124
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=43.73 E-value=8.8e+02 Score=32.43 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=5.2
Q ss_pred CCCCCccccc
Q 000064 376 GREGNMWRAS 385 (2464)
Q Consensus 376 g~e~nsWR~s 385 (2464)
|...|+|-..
T Consensus 235 ~~~~~Lwicl 244 (493)
T KOG0804|consen 235 GCTEDLWICL 244 (493)
T ss_pred cccccEEEEE
Confidence 4455566543
No 125
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=42.85 E-value=3.5e+02 Score=37.58 Aligned_cols=6 Identities=17% Similarity=0.517 Sum_probs=2.1
Q ss_pred cccccc
Q 000064 354 VSSSEV 359 (2464)
Q Consensus 354 ~~~~e~ 359 (2464)
|..|++
T Consensus 328 i~vSql 333 (809)
T KOG0247|consen 328 ITVSQL 333 (809)
T ss_pred eeEEee
Confidence 333333
No 126
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=42.84 E-value=96 Score=40.85 Aligned_cols=15 Identities=40% Similarity=0.523 Sum_probs=8.4
Q ss_pred CcCCCCCCccccccc
Q 000064 373 SREGREGNMWRASSS 387 (2464)
Q Consensus 373 ~reg~e~nsWR~ssp 387 (2464)
.|-||+||+-.+.-|
T Consensus 349 aR~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 349 ARAGREGNAIVFLNP 363 (567)
T ss_pred hhccCccceEEEecc
Confidence 344666666555554
No 127
>PLN03188 kinesin-12 family protein; Provisional
Probab=42.76 E-value=7.5e+02 Score=36.59 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=5.6
Q ss_pred CccccCCCCCCC
Q 000064 70 PKLSVPPPLNLP 81 (2464)
Q Consensus 70 ~klsvp~plnlp 81 (2464)
+||-.|-|.+.|
T Consensus 65 ~~~~sp~p~~pp 76 (1320)
T PLN03188 65 AKLKSPLPPRPP 76 (1320)
T ss_pred ccccCCCCCCCC
Confidence 344444444444
No 128
>PF15359 CDV3: Carnitine deficiency-associated protein 3
Probab=41.64 E-value=63 Score=36.03 Aligned_cols=62 Identities=29% Similarity=0.443 Sum_probs=33.6
Q ss_pred CCCCCCccccccccccCcccCCCCccCCCCCCCCCcccccCCCCccCCC-CCCccCCCccccccccc-cCCCccccccc
Q 000064 117 GWTKPGTAVGSDQKINDKVDQGPHSVDGLSKGNDGVGVYVPPSVRSGTV-GPALSSFAPAEKASVLR-GEDFPSLQAAL 193 (2464)
Q Consensus 117 gwtkp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~ek~~vlr-gedfpsl~a~l 193 (2464)
=|.|++++.......- +... --...++|||.||.+|-... -....+ |==|- =+-||||+||.
T Consensus 60 PWnk~~~~~~~~~~~~--v~~~-------~~p~~~~gvY~PP~~R~~~~~r~~~qg------aPdI~Se~~FPSL~sta 123 (129)
T PF15359_consen 60 PWNKSAPAQAPPAPAP--VEEP-------PEPATTSGVYRPPAARNTTTKRKRPQG------APDIFSEEQFPSLQSTA 123 (129)
T ss_pred CCcCCCCCCCCCCCCc--cCCC-------CCCCCCCceecCcccccccccCCCCCC------CCCccccccccchHHHh
Confidence 6999887544444432 1111 11356789999999993331 111111 11111 24799999874
No 129
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=39.96 E-value=4.5e+02 Score=34.70 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=11.8
Q ss_pred chhhccccccCccccCCC
Q 000064 832 HMDEFTVSRGQRWNMSGD 849 (2464)
Q Consensus 832 ~LeDYr~~~p~rWnipGD 849 (2464)
.+.|+-..+..++++|=+
T Consensus 380 qf~~e~~~k~~~~~lPy~ 397 (447)
T KOG2751|consen 380 QFADELEKKDTSFNLPYD 397 (447)
T ss_pred HHHHHHHhcCcccCCcch
Confidence 456666777777776653
No 130
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=38.31 E-value=17 Score=50.13 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=13.2
Q ss_pred cccchhhhhccccccccCCCCcccceeec
Q 000064 1109 ENIELTQEFEGIHLEEKGSPHMMSNLVLG 1137 (2464)
Q Consensus 1109 eni~l~~e~~~~hl~~k~~p~~~~~~vlg 1137 (2464)
.+|-|+|-.- +|-..-+..-+||.|..|
T Consensus 853 shlhlhqq~~-~h~~~~~~hpl~dpla~g 880 (982)
T PF03154_consen 853 SHLHLHQQDA-LHQASAAVHPLVDPLAAG 880 (982)
T ss_pred HHHHhhcccc-ccccccCCccccchhccc
Confidence 3445554222 444444434456666554
No 131
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=37.08 E-value=1.3e+03 Score=32.80 Aligned_cols=7 Identities=43% Similarity=0.558 Sum_probs=3.6
Q ss_pred ccccccc
Q 000064 349 SETGKVS 355 (2464)
Q Consensus 349 ~e~~k~~ 355 (2464)
|=+||.+
T Consensus 34 nGsGKSS 40 (908)
T COG0419 34 NGAGKSS 40 (908)
T ss_pred CCCcHHH
Confidence 4455554
No 132
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=36.63 E-value=1.2e+03 Score=31.34 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=7.2
Q ss_pred ccCCCccc--cccchhc
Q 000064 714 ADVGDWED--GERMVER 728 (2464)
Q Consensus 714 kD~~D~ED--sERmvDr 728 (2464)
+-.+.|-+ .+|+++.
T Consensus 200 K~rG~WGE~qLerILE~ 216 (475)
T PRK10361 200 KTQGNWGEVVLTRVLEA 216 (475)
T ss_pred CcCcchHHHHHHHHHHH
Confidence 44556644 4444443
No 133
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.53 E-value=9.8e+02 Score=34.75 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=3.5
Q ss_pred cccccc
Q 000064 780 SSTFIT 785 (2464)
Q Consensus 780 sS~FiP 785 (2464)
-++|+|
T Consensus 1043 Fs~LLP 1048 (1174)
T KOG0933|consen 1043 FSTLLP 1048 (1174)
T ss_pred HHHhCC
Confidence 455666
No 134
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=36.01 E-value=1.5e+02 Score=39.77 Aligned_cols=7 Identities=14% Similarity=0.226 Sum_probs=3.3
Q ss_pred ccccccC
Q 000064 85 KEHERFD 91 (2464)
Q Consensus 85 kehe~~d 91 (2464)
++-|+|+
T Consensus 10 ~~~~~~~ 16 (563)
T KOG2341|consen 10 ETDEGVS 16 (563)
T ss_pred ccccccc
Confidence 3444444
No 135
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=35.16 E-value=8.7e+02 Score=35.19 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=5.1
Q ss_pred CCCCCCCCCCCC
Q 000064 500 FPHNDPMHNFSR 511 (2464)
Q Consensus 500 lL~NdpllNFGR 511 (2464)
||+.|-...|.+
T Consensus 146 FLpQDkV~EFa~ 157 (1072)
T KOG0979|consen 146 FLPQDKVKEFAR 157 (1072)
T ss_pred hccHHHHHHHHc
Confidence 344444444443
No 136
>PF15556 Zwint: ZW10 interactor
Probab=35.16 E-value=9.1e+02 Score=29.44 Aligned_cols=7 Identities=43% Similarity=0.823 Sum_probs=4.3
Q ss_pred CCCCCCc
Q 000064 537 FDGRDPF 543 (2464)
Q Consensus 537 fdG~DP~ 543 (2464)
.-|-||.
T Consensus 45 ~QgldpL 51 (252)
T PF15556_consen 45 AQGLDPL 51 (252)
T ss_pred cccCCcc
Confidence 5566666
No 137
>COG5281 Phage-related minor tail protein [Function unknown]
Probab=34.56 E-value=6.7e+02 Score=35.62 Aligned_cols=11 Identities=55% Similarity=0.827 Sum_probs=4.3
Q ss_pred ccccccCCCcc
Q 000064 178 ASVLRGEDFPS 188 (2464)
Q Consensus 178 ~~vlrgedfps 188 (2464)
+.++|+|-|=+
T Consensus 42 ~~~r~~~~~~~ 52 (833)
T COG5281 42 QGVRRGEEFNS 52 (833)
T ss_pred HHHHHHHHHhc
Confidence 33344443333
No 138
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=34.03 E-value=22 Score=49.08 Aligned_cols=10 Identities=20% Similarity=0.690 Sum_probs=4.9
Q ss_pred cccccchhhcc
Q 000064 827 GILEPHMDEFT 837 (2464)
Q Consensus 827 G~tD~~LeDYr 837 (2464)
+-+|. |+-|+
T Consensus 698 ~p~DP-lL~Y~ 707 (982)
T PF03154_consen 698 GPMDP-LLAYH 707 (982)
T ss_pred CCCCH-HHHhh
Confidence 33554 55554
No 139
>KOG1425 consensus Microfibrillar-associated protein MFAP1 [Cytoskeleton]
Probab=33.01 E-value=2.7e+02 Score=35.83 Aligned_cols=7 Identities=57% Similarity=0.923 Sum_probs=2.7
Q ss_pred CCCCCCC
Q 000064 327 PRPSVLP 333 (2464)
Q Consensus 327 p~~~~~p 333 (2464)
|+---||
T Consensus 74 prlrrl~ 80 (430)
T KOG1425|consen 74 PRLRRLP 80 (430)
T ss_pred ccccccc
Confidence 4433334
No 140
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=32.99 E-value=14 Score=48.11 Aligned_cols=8 Identities=25% Similarity=-0.055 Sum_probs=0.0
Q ss_pred CCcccccc
Q 000064 379 GNMWRASS 386 (2464)
Q Consensus 379 ~nsWR~ss 386 (2464)
.+.||.++
T Consensus 236 ~~s~rqlS 243 (495)
T PF12004_consen 236 DFSRRQLS 243 (495)
T ss_dssp --------
T ss_pred chhhhhcc
Confidence 44555555
No 141
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=32.68 E-value=1.4e+03 Score=30.94 Aligned_cols=8 Identities=13% Similarity=0.351 Sum_probs=3.5
Q ss_pred ccCccccC
Q 000064 840 RGQRWNMS 847 (2464)
Q Consensus 840 ~p~rWnip 847 (2464)
.-..|-.=
T Consensus 401 l~~~~H~l 408 (508)
T PF00901_consen 401 LTVHWHAL 408 (508)
T ss_pred cccccccc
Confidence 34445443
No 142
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.97 E-value=2.9e+02 Score=37.18 Aligned_cols=6 Identities=33% Similarity=0.363 Sum_probs=2.7
Q ss_pred cccccc
Q 000064 412 LNREAN 417 (2464)
Q Consensus 412 RnRgaS 417 (2464)
-+|++-
T Consensus 357 k~RQTm 362 (691)
T KOG0338|consen 357 KNRQTM 362 (691)
T ss_pred ccccce
Confidence 444444
No 143
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=31.49 E-value=1.9e+02 Score=38.50 Aligned_cols=8 Identities=25% Similarity=-0.147 Sum_probs=3.5
Q ss_pred hccccccc
Q 000064 213 QGMSQELG 220 (2464)
Q Consensus 213 q~~~~~~~ 220 (2464)
-.|+++-+
T Consensus 103 ~ils~edF 110 (591)
T KOG2505|consen 103 PILSEEDF 110 (591)
T ss_pred CcccHHHH
Confidence 34454433
No 144
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.33 E-value=1.1e+03 Score=33.95 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=9.4
Q ss_pred ecccccccccCCCC
Q 000064 1328 FGQLRYTSPVSQGV 1341 (2464)
Q Consensus 1328 FGQlry~~pi~q~v 1341 (2464)
|-|.|.-+-++||-
T Consensus 1108 ~~qer~er~~Lkg~ 1121 (1243)
T KOG0971|consen 1108 ISQERHERSILKGA 1121 (1243)
T ss_pred HHHHHHHHHHHhHH
Confidence 55677777777764
No 145
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=31.27 E-value=78 Score=40.03 Aligned_cols=57 Identities=32% Similarity=0.646 Sum_probs=36.6
Q ss_pred ccccCCCCCCCcccccccccCCCCCCCCC-----------------C----------CCCCCCCCCCCCCCCCCCCCCCc
Q 000064 71 KLSVPPPLNLPSLRKEHERFDSSGSNGGP-----------------A----------GGGVSGAGQRPGSSGTGWTKPGT 123 (2464)
Q Consensus 71 klsvp~plnlpslrkehe~~ds~g~~~g~-----------------~----------~~~~~g~g~rp~ssg~gwtkp~~ 123 (2464)
.-.||||-..||.++...-||--|+-||. . ||-|+|-|.+-...|.||-+|+.
T Consensus 310 nE~~ppppempswqqqq~~~~~~ggrgggkg~f~~~~~~~~~~~eqgg~Rgg~Gg~~gGrGgGRGggG~GGGggyqqp~~ 389 (465)
T KOG3973|consen 310 NEMVPPPPEMPSWQQQQHTFDRQGGRGGGKGTFDRPKTHEEQVLEQGGSRGGSGGNWGGRGGGRGGGGRGGGGGYQQPQQ 389 (465)
T ss_pred ccCCCCCCCCCcHHHhcCCCCCCCCcCCCCCCCcCccccccchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCchh
Confidence 34589999999999988888866654333 0 11122333344556689998876
Q ss_pred cccc
Q 000064 124 AVGS 127 (2464)
Q Consensus 124 ~~~~ 127 (2464)
--.+
T Consensus 390 ~~~~ 393 (465)
T KOG3973|consen 390 QQQQ 393 (465)
T ss_pred hhhc
Confidence 5544
No 146
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.95 E-value=8.6e+02 Score=33.76 Aligned_cols=15 Identities=20% Similarity=0.058 Sum_probs=7.2
Q ss_pred CCCccchhHhhhccc
Q 000064 261 DTGSARRSEQVRKQE 275 (2464)
Q Consensus 261 ~~g~~~~~e~~rk~~ 275 (2464)
.+|-.|.-=-.||+-
T Consensus 210 SLGITCIELAERkPP 224 (948)
T KOG0577|consen 210 SLGITCIELAERKPP 224 (948)
T ss_pred eccchhhhhhhcCCC
Confidence 345555444445543
No 147
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.89 E-value=1.3e+02 Score=38.07 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=5.4
Q ss_pred ccccCCCCCCCCC
Q 000064 909 RYSMRHPRVLPPP 921 (2464)
Q Consensus 909 RysmRqPRVlPPP 921 (2464)
|=-|.-||-.+-|
T Consensus 403 ~gA~~n~~~anKp 415 (469)
T KOG3878|consen 403 RGAVNNPTAANKP 415 (469)
T ss_pred hhhhcCCCCCCCC
Confidence 3334444444433
No 148
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=28.53 E-value=1.6e+03 Score=33.11 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=10.8
Q ss_pred cccceeEeeecCCccCCC
Q 000064 1656 LQSGVVRVFEQPGIEAPS 1673 (2464)
Q Consensus 1656 lqsg~vrvf~q~Gie~ps 1673 (2464)
+--.|.+.|++.|||.|-
T Consensus 1061 l~~~I~~~F~~~GIeIPf 1078 (1109)
T PRK10929 1061 IHQLILAGFREHGIDMPF 1078 (1109)
T ss_pred HHHHHHHHHHHCCCcCCC
Confidence 333556666667776664
No 149
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=28.26 E-value=1.4e+02 Score=40.97 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=18.5
Q ss_pred CcccccCCCCccCCCCCCccC--CCccccccccc
Q 000064 151 GVGVYVPPSVRSGTVGPALSS--FAPAEKASVLR 182 (2464)
Q Consensus 151 ~~~~~~~~s~~~~~~~~~~~~--~~~~ek~~vlr 182 (2464)
..-|..|.|+.|-+|...... -.....++||.
T Consensus 73 s~~vhApvSG~V~~I~~~~~~h~sg~~~~~ivIe 106 (695)
T PRK05035 73 SLPVHAPTSGTVVAIEPHPTAHPSGLAELCVVIE 106 (695)
T ss_pred eeEEeCCCCeEEeeeccccccCCCCcccceEEEc
Confidence 345667777777777643221 23445567776
No 150
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.21 E-value=1.7e+03 Score=31.18 Aligned_cols=6 Identities=17% Similarity=0.313 Sum_probs=2.4
Q ss_pred ccCCCC
Q 000064 484 QRSSAS 489 (2464)
Q Consensus 484 Q~ss~S 489 (2464)
.+|..+
T Consensus 406 ~~tV~s 411 (948)
T KOG0577|consen 406 EHTVTS 411 (948)
T ss_pred CCcccc
Confidence 334443
No 151
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.67 E-value=1.2e+03 Score=30.13 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=6.1
Q ss_pred CCCCCCc-cchhhhHH
Q 000064 537 FDGRDPF-SAGLVGVV 551 (2464)
Q Consensus 537 fdG~DP~-~~~Mle~V 551 (2464)
..|+|-. .|.+++.|
T Consensus 86 v~GnDr~~~W~~LG~~ 101 (469)
T KOG3878|consen 86 VIGNDRQQHWQLLGEI 101 (469)
T ss_pred cccChHHHHHHHHhcc
Confidence 3444443 33344433
No 152
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=27.28 E-value=43 Score=42.14 Aligned_cols=20 Identities=45% Similarity=0.790 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCCCCCCce
Q 000064 36 HSGYYGSNRARPTGGGGGGM 55 (2464)
Q Consensus 36 ~~g~~~~~~~~~~~~~gggm 55 (2464)
+||+.|..+|.+||||+||+
T Consensus 441 gggr~gggrgrgggggrg~y 460 (465)
T KOG3973|consen 441 GGGRDGGGRGRGGGGGRGGY 460 (465)
T ss_pred CCCCCCCCCCCCCCCCCccc
Confidence 44444444444455555553
No 153
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=26.69 E-value=5.1e+02 Score=32.99 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=6.2
Q ss_pred CCCCCeeeccCC
Q 000064 279 PGPLPLVRLKPR 290 (2464)
Q Consensus 279 ~gplplvrl~~~ 290 (2464)
-|+-|+.||++-
T Consensus 25 ~g~~~~~h~~y~ 36 (410)
T KOG4715|consen 25 GGYNPYTHLAYS 36 (410)
T ss_pred CCCCcchhhhcc
Confidence 444455556553
No 154
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=26.59 E-value=5.9e+02 Score=35.24 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=27.4
Q ss_pred cccCCCCCcccccchhhhhcc--ccccccCCCCcccceeeccccceeecC
Q 000064 1099 QEEDVPEGDDENIELTQEFEG--IHLEEKGSPHMMSNLVLGFNEGVEVPM 1146 (2464)
Q Consensus 1099 ~~edei~~~deni~l~~e~~~--~hl~~k~~p~~~~~~vlgf~egvev~m 1146 (2464)
.+.+-|.++=..=|...||+. .-+.++.-|..+|..+-|.-.=+=.+|
T Consensus 584 ~q~~li~~AFA~DdV~~eF~~eK~~~~e~e~pk~~~~~LPGWG~W~G~g~ 633 (735)
T PF04615_consen 584 EQRELIREAFAGDDVVAEFEKEKEEEIEEEKPKEIDLTLPGWGSWAGPGI 633 (735)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhhhCCcccccCCCCcccccCCCc
Confidence 345556666233355677764 223355668788887788765333333
No 155
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.53 E-value=42 Score=46.22 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=12.9
Q ss_pred cCCCCCcccccchhhhhccccccccC
Q 000064 1101 EDVPEGDDENIELTQEFEGIHLEEKG 1126 (2464)
Q Consensus 1101 edei~~~deni~l~~e~~~~hl~~k~ 1126 (2464)
+|-..+.++-+++.++.-+.-++|.+
T Consensus 1426 dd~D~dd~~e~~~~D~~d~~~s~eDn 1451 (1516)
T KOG1832|consen 1426 DDLDRDDGLEGDNSDSGDDDLSSEDN 1451 (1516)
T ss_pred cccccccchhcccccccccccccccc
Confidence 33333335566666665554444433
No 156
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=25.89 E-value=1.9e+02 Score=39.73 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=5.4
Q ss_pred chhhhHHhhhhh
Q 000064 545 AGLVGVVKKKKD 556 (2464)
Q Consensus 545 ~~Mle~VKKKKE 556 (2464)
+.|...++.-+.
T Consensus 425 Iplv~~~r~aK~ 436 (695)
T PRK05035 425 IPLVQYYRQAKA 436 (695)
T ss_pred CcHHHHHHHHHH
Confidence 444454444433
No 157
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=25.63 E-value=2.3e+03 Score=31.36 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=8.6
Q ss_pred CCccccccccCCCCchh
Q 000064 185 DFPSLQAALPAASGSEK 201 (2464)
Q Consensus 185 dfpsl~a~lp~~~~~~~ 201 (2464)
||=-+|+-|+.+.++++
T Consensus 347 ~i~~~q~el~~~~~~e~ 363 (1072)
T KOG0979|consen 347 MILDAQAELQETEDPEN 363 (1072)
T ss_pred HHHHHHhhhhhcCCccc
Confidence 34445555555555544
No 158
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=25.62 E-value=2.3e+02 Score=35.77 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=4.5
Q ss_pred ccccccccccCC
Q 000064 381 MWRASSSLQKDG 392 (2464)
Q Consensus 381 sWR~sspl~k~w 392 (2464)
+|-.---|-++|
T Consensus 92 LWeiGK~Ig~mW 103 (410)
T KOG4715|consen 92 LWEIGKIIGGMW 103 (410)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 159
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=25.35 E-value=1.9e+02 Score=40.12 Aligned_cols=89 Identities=36% Similarity=0.567 Sum_probs=0.0
Q ss_pred cccCcccccCCCcccCCCCC----CCCCCccccccCCCCCCCCCCccccCccCCCCccccCCCCCCcccccccccCCCCC
Q 000064 2034 ALPADLSVETPPISLWPPLP----SPPSSNQMISHFPGGLPSHFPLYEMNPLLGGPIFTFGPHEESVPAQSQTQKTASTP 2109 (2464)
Q Consensus 2034 aLPADLSVdtp~is~w~~lp----spq~s~~m~s~~p~~~~~~f~~~emn~mlgg~~fafgp~~e~~~~q~~~q~s~~~~ 2109 (2464)
.||+|--+=.| |||| .++..-+-..-+||+.+..=|-==|-+|.|||.-|=
T Consensus 520 ~~~~~~~iP~P-----P~~pp~gG~g~pppPppPPlpggag~PPPPpplPg~aG~PPpPp-------------------- 574 (1102)
T KOG1924|consen 520 LLPIDGGIPPP-----PPLPPTGGTGPPPPPPPPPLPGGAGPPPPPPPLPGIAGGPPPPP-------------------- 574 (1102)
T ss_pred CCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCCccC--------------------
Q ss_pred CCCCCCCccccccCcccccCCCCCCCCCccCCC-CCCCCCCCCCcEEEcccCccCcccc
Q 000064 2110 GSSSLGTWQQCHSGVDSFYGPPAGYTGPFISPT-GGIPGVQGPPHMVVYNHFAPVGQFG 2167 (2464)
Q Consensus 2110 ~s~p~g~w~q~hsgvdsfy~pp~gf~gpfi~p~-g~ipgvqgpphm~vynhfapvgqfg 2167 (2464)
||-||.||---|| ||.+|-+-||--.-.=+-|||=-||
T Consensus 575 --------------------pppg~~gppPPPpp~g~~Gg~ppPP~~gm~pmaPvlP~g 613 (1102)
T KOG1924|consen 575 --------------------PPPGGGGPPPPPPPGGFLGGPPPPPPPGMFPMAPVLPFG 613 (1102)
T ss_pred --------------------CCCCCCCCCCcCCCCCCCCCCCCCCCCCcccccccCCCC
No 160
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=25.04 E-value=2.7e+02 Score=35.42 Aligned_cols=8 Identities=13% Similarity=0.123 Sum_probs=3.9
Q ss_pred CCCCccch
Q 000064 539 GRDPFSAG 546 (2464)
Q Consensus 539 G~DP~~~~ 546 (2464)
.-+|....
T Consensus 186 SYNP~~ed 193 (387)
T PF07767_consen 186 SYNPSFED 193 (387)
T ss_pred CCCcCHHH
Confidence 55555333
No 161
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=24.80 E-value=1.4e+03 Score=28.51 Aligned_cols=7 Identities=43% Similarity=0.918 Sum_probs=3.7
Q ss_pred ccCCccc
Q 000064 478 FRGDAFQ 484 (2464)
Q Consensus 478 YrG~A~Q 484 (2464)
|||||-=
T Consensus 35 yRGGALL 41 (322)
T KOG2962|consen 35 YRGGALL 41 (322)
T ss_pred Eecceee
Confidence 5555543
No 162
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=24.79 E-value=1.9e+03 Score=32.54 Aligned_cols=6 Identities=33% Similarity=0.462 Sum_probs=4.0
Q ss_pred ccchhh
Q 000064 1110 NIELTQ 1115 (2464)
Q Consensus 1110 ni~l~~ 1115 (2464)
.|||++
T Consensus 770 ~ldl~~ 775 (1109)
T PRK10929 770 VIDLDA 775 (1109)
T ss_pred ccCHHH
Confidence 577765
No 163
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=24.57 E-value=3.4e+02 Score=37.44 Aligned_cols=7 Identities=29% Similarity=0.615 Sum_probs=2.9
Q ss_pred cceeecc
Q 000064 1132 SNLVLGF 1138 (2464)
Q Consensus 1132 ~~~vlgf 1138 (2464)
|.||-=|
T Consensus 596 DdV~~eF 602 (735)
T PF04615_consen 596 DDVVAEF 602 (735)
T ss_pred CchHHHH
Confidence 4444333
No 164
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=23.43 E-value=2.5e+03 Score=30.79 Aligned_cols=7 Identities=29% Similarity=0.601 Sum_probs=4.0
Q ss_pred ccccccc
Q 000064 349 SETGKVS 355 (2464)
Q Consensus 349 ~e~~k~~ 355 (2464)
|-+||.+
T Consensus 39 tGaGKSt 45 (1047)
T PRK10246 39 TGAGKTT 45 (1047)
T ss_pred CCCCHHH
Confidence 5556654
No 165
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=23.26 E-value=7.9e+02 Score=28.59 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=12.3
Q ss_pred cccCCCCCCCCCCccchhhhHH
Q 000064 530 KDFGSSSFDGRDPFSAGLVGVV 551 (2464)
Q Consensus 530 dDfGAsgfdG~DP~~~~Mle~V 551 (2464)
+-||.....|=.|+...+++.+
T Consensus 17 d~~G~e~v~~LmP~VV~vLE~L 38 (158)
T PF09744_consen 17 DRYGEEAVKGLMPKVVRVLELL 38 (158)
T ss_pred HHhChhHHHHHHHHHHHHHHHH
Confidence 3455555556666655565555
No 166
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.68 E-value=2.5e+03 Score=31.47 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000064 573 AELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREE 652 (2464)
Q Consensus 573 aELERRqEeEEEEReReEEEQEREEEEaRKEEEEreReaREEEERRRReEEEEREKEEREEKEReEAERREEEERKrrEE 652 (2464)
.+++......+.+......+-....++..+.+++..+++....+.+.....-....+.+...+..-.+-.++-+..+.+.
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~ 904 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREI 904 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcccchhhh
Q 000064 653 ERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADEKSSGLAKE 707 (2464)
Q Consensus 653 EErRrEEEEERRREEEEQRRqEEEERkKKrQaEeEKrrkqAEakakEKaeq~kkE 707 (2464)
++.+.+.+.........+.+.++.....+.+.++...+...-............+
T Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 959 (1311)
T TIGR00606 905 KDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKD 959 (1311)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 167
>PLN02372 violaxanthin de-epoxidase
Probab=22.55 E-value=9.5e+02 Score=31.86 Aligned_cols=7 Identities=29% Similarity=0.890 Sum_probs=4.4
Q ss_pred ccccccc
Q 000064 381 MWRASSS 387 (2464)
Q Consensus 381 sWR~ssp 387 (2464)
.||+..|
T Consensus 243 ~wRv~tp 249 (455)
T PLN02372 243 NWRINTP 249 (455)
T ss_pred EEEEecC
Confidence 4666665
No 168
>KOG2823 consensus Cellular protein (glioma tumor suppressor candidate region gene 2) [General function prediction only]
Probab=22.50 E-value=3.3e+02 Score=35.68 Aligned_cols=6 Identities=17% Similarity=0.783 Sum_probs=2.7
Q ss_pred Cccccc
Q 000064 316 SEAYWE 321 (2464)
Q Consensus 316 ~e~~w~ 321 (2464)
+--||-
T Consensus 18 nKkaWR 23 (438)
T KOG2823|consen 18 NKKAWR 23 (438)
T ss_pred cchhhh
Confidence 344554
No 169
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.31 E-value=2e+02 Score=39.56 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=8.8
Q ss_pred eecccCCC----CCCCCCCcee
Q 000064 1281 FGLFSGPS----LIPSPFPAIQ 1298 (2464)
Q Consensus 1281 FGlfsGps----LipspvPAIQ 1298 (2464)
|-|+++=+ |=..+||-||
T Consensus 600 fRLYt~~aY~~eLE~~t~PEIq 621 (902)
T KOG0923|consen 600 FRLYTAWAYEHELEEMTVPEIQ 621 (902)
T ss_pred EEeechhhhhhhhccCCCccee
Confidence 45555422 3455555555
No 170
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=22.18 E-value=2.1e+03 Score=29.38 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=17.2
Q ss_pred CCccccccccCCCCchh-hhcccchh-Hhhhccccccc
Q 000064 185 DFPSLQAALPAASGSEK-KQKDGFSQ-KQKQGMSQELG 220 (2464)
Q Consensus 185 dfpsl~a~lp~~~~~~~-k~k~~~~q-k~kq~~~~~~~ 220 (2464)
|.|.--.+-..+|-..| +.|..--. .-|..|++++-
T Consensus 20 dSP~cmEtssttSdl~QnEikNvkRenEsk~Tlsed~y 57 (527)
T PF15066_consen 20 DSPFCMETSSTTSDLPQNEIKNVKRENESKFTLSEDIY 57 (527)
T ss_pred CCcceeeccccccccchHHhhhhhccCcccchhhHHHH
Confidence 55666666655555443 33222111 23466666643
No 171
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=21.83 E-value=1.1e+03 Score=26.20 Aligned_cols=75 Identities=21% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000064 584 QERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRII 658 (2464)
Q Consensus 584 EEReReEEEQEREEEEaRKEEEEreReaREEEERRRReEEEEREKEEREEKEReEAERREEEERKrrEEEErRrE 658 (2464)
.+.++++.-..++.++++++++.....++++..+-....+.+.++..++--+..+++-.++..+...+.++....
T Consensus 10 ~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~ 84 (108)
T COG2811 10 REIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASA 84 (108)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 172
>PTZ00332 paraflagellar rod protein; Provisional
Probab=21.69 E-value=2e+03 Score=29.73 Aligned_cols=19 Identities=11% Similarity=0.185 Sum_probs=7.6
Q ss_pred CCCCccchhhhHHhhhhhh
Q 000064 539 GRDPFSAGLVGVVKKKKDV 557 (2464)
Q Consensus 539 G~DP~~~~Mle~VKKKKEe 557 (2464)
+-||.-..-++.+.|.++.
T Consensus 182 ~~~~~i~~~~~~~~k~~ei 200 (589)
T PTZ00332 182 STDDQIKTQLAQLEKTNEI 200 (589)
T ss_pred hcCHhHHHHHHHHHHHHHH
Confidence 4444423233444444443
No 173
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=21.55 E-value=3e+02 Score=31.14 Aligned_cols=84 Identities=20% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000064 574 ELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQE--EQRRRLEEETREAVWRAEQEQLEATRKAEEQRIARE 651 (2464)
Q Consensus 574 ELERRqEeEEEEReReEEEQEREEEEaRKEEEEreReaREEE--ERRRReEEEEREKEEREEKEReEAERREEEERKrrE 651 (2464)
+++++-.+..+.|++...+--....+.-+--+--=.....+. |+.+...+.++.++++..+++.++.+++.++.++..
T Consensus 43 ELrkr~~~~r~~Rq~e~~~~~~~lKe~skSdkPIW~~~~iesp~E~~~~~~~~~k~~~e~~qk~e~~r~~~e~~e~~~~~ 122 (128)
T PF07960_consen 43 ELRKRYLENRELRQQEFDEFMKILKETSKSDKPIWKTGKIESPWEKKRNVQEFQKEEAEEAQKEEAERIREELEEIRQLS 122 (128)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceeeCCccChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 000064 652 EERQRI 657 (2464)
Q Consensus 652 EEErRr 657 (2464)
+++++.
T Consensus 123 ~~~~~e 128 (128)
T PF07960_consen 123 EEKKKE 128 (128)
T ss_pred HHhhcC
No 174
>PF15295 CCDC50_N: Coiled-coil domain-containing protein 50 N-terminus
Probab=21.47 E-value=1.3e+03 Score=26.62 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000064 593 QERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKL 672 (2464)
Q Consensus 593 QEREEEEaRKEEEEreReaREEEERRRReEEEEREKEEREEKEReEAERREEEERKrrEEEErRrEEEEERRREEEEQRR 672 (2464)
++++.+..-.--..+-+..+.--...+++.+++.+++....+.+.......-++-.+.-.++..+++++.++++++-+..
T Consensus 34 QeqEIe~hy~~N~~rn~lV~~D~~vAk~~Q~eEd~~a~~~~~~~~~e~Ee~D~e~Ar~iqe~l~r~~e~~r~~Ee~de~i 113 (132)
T PF15295_consen 34 QEQEIEHHYASNRQRNRLVQEDLRVAKQEQEEEDERAQALRQQQQREIEEQDEEYAREIQEELQREAEEQRQQEEEDEEI 113 (132)
T ss_pred HHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000064 673 LELEERIAKRQAEAAKS 689 (2464)
Q Consensus 673 qEEEERkKKrQaEeEKr 689 (2464)
......++..+..++.+
T Consensus 114 A~~Lqe~e~~~~~r~~k 130 (132)
T PF15295_consen 114 ARRLQEEERQEERRRSK 130 (132)
T ss_pred HHHHHHHHHHHHHHHhc
No 175
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.27 E-value=1.2e+02 Score=37.94 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000064 641 RKAEEQRIAREEERQRIIMEEERRKHAAKQ 670 (2464)
Q Consensus 641 RREEEERKrrEEEErRrEEEEERRREEEEQ 670 (2464)
.++++|.++++||-+||++|-+||+++...
T Consensus 63 ~~kq~eL~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 63 AKKQAELLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
No 176
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=21.11 E-value=2.9e+03 Score=30.62 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCccccccCcCCcc-ccccccccccccCCCCCcccCCCcCC
Q 000064 327 PRPSVLPHKPAHNVFERWGQRDSE-TGKVSSSEVARVDPFGRDIRAPSREG 376 (2464)
Q Consensus 327 p~~~~~p~k~~~~~~~~~g~r~~e-~~k~~~~e~~~~~~~~~d~~~~~reg 376 (2464)
+-.||+| +.=+.+||.--+-..| .=||+-=|+|--+ ..|+-+++=.+
T Consensus 159 ~~aGIIP-Ral~~IFd~Le~~~~EYsvKVSfLELYNEE--l~DLLa~~~~~ 206 (1041)
T KOG0243|consen 159 SEAGIIP-RALRQIFDTLEAQGAEYSVKVSFLELYNEE--LTDLLASEDTS 206 (1041)
T ss_pred ccCCcch-HHHHHHHHHHHhcCCeEEEEEEehhhhhHH--HHHhcCCcccc
Confidence 4577888 4455677754442222 2345444444333 33666555443
No 177
>PRK11281 hypothetical protein; Provisional
Probab=20.62 E-value=2.8e+03 Score=30.91 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=13.0
Q ss_pred cccceeEeeecCCccCCCCC
Q 000064 1656 LQSGVVRVFEQPGIEAPSDE 1675 (2464)
Q Consensus 1656 lqsg~vrvf~q~Gie~psd~ 1675 (2464)
|--.|-+.|++.|||.|---
T Consensus 1064 L~~~I~~~f~e~GIeIpfPq 1083 (1113)
T PRK11281 1064 LNRRIDRLFRENDINIAFNQ 1083 (1113)
T ss_pred HHHHHHHHHHHCCCcCCCCC
Confidence 44556677788888876443
No 178
>PF07415 Herpes_LMP2: Gammaherpesvirus latent membrane protein (LMP2) protein; InterPro: IPR010881 This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) is a human gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear [].; GO: 0019042 latent virus infection, 0033644 host cell membrane; PDB: 2JO9_B 1UXW_C.
Probab=20.56 E-value=34 Score=42.97 Aligned_cols=41 Identities=34% Similarity=0.563 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC
Q 000064 93 SGSNGGPAGGGVSGAGQRPGSSGTGWTKPGTAVGSDQKIND 133 (2464)
Q Consensus 93 ~g~~~g~~~~~~~g~g~rp~ssg~gwtkp~~~~~~~~~~~~ 133 (2464)
-+++|||-|+-++++-.-|+++|.-|..|+.+..++.+.++
T Consensus 14 p~~~~~~dg~e~~~~~~~ps~~~~~~~~~~~p~~~d~~~~~ 54 (489)
T PF07415_consen 14 PSPHGGPDGYEGSNNSQYPSSFGSSWNSPGPPNYEDYPSNS 54 (489)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccCCCCC
Confidence 35678899999999999999999999999998888877764
No 179
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.19 E-value=9.8e+02 Score=34.90 Aligned_cols=13 Identities=38% Similarity=0.276 Sum_probs=7.8
Q ss_pred CccccccccccCC
Q 000064 173 APAEKASVLRGED 185 (2464)
Q Consensus 173 ~~~ek~~vlrged 185 (2464)
..-|+-++||=-|
T Consensus 331 NyeETLSTLRYAd 343 (1221)
T KOG0245|consen 331 NYEETLSTLRYAD 343 (1221)
T ss_pred ChHHHHHHHHHhh
Confidence 3457777777543
No 180
>PRK13203 ureB urease subunit beta; Reviewed
Probab=20.17 E-value=38 Score=36.50 Aligned_cols=14 Identities=43% Similarity=0.892 Sum_probs=12.5
Q ss_pred CCCCCccccCccCC
Q 000064 2070 PSHFPLYEMNPLLG 2083 (2464)
Q Consensus 2070 ~~~f~~~emn~mlg 2083 (2464)
=|||.|||.|+.|=
T Consensus 37 GSH~HF~E~N~aL~ 50 (102)
T PRK13203 37 GSHYHFFEVNPALS 50 (102)
T ss_pred ccccchhhcCcchh
Confidence 48999999999986
Done!