Query 000064
Match_columns 2464
No_of_seqs 298 out of 1418
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 12:02:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000064.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000064hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ejxb_ b.85.3.1 (B:) Urease, 17.9 17 0.0012 35.3 0.9 13 2071-2083 38-50 (101)
2 d1e9ya1 b.85.3.1 (A:106-238) U 15.4 21 0.0015 36.0 0.9 13 2071-2083 38-50 (133)
3 d4ubpb_ b.85.3.1 (B:) Urease, 14.9 22 0.0016 35.4 0.9 13 2071-2083 40-52 (122)
4 d1k47a2 d.58.26.4 (A:195-329) 7.6 73 0.0053 30.6 1.8 14 48-61 98-111 (135)
5 d1v9da_ a.207.1.1 (A:) Diaphan 3.6 4.6E+02 0.033 28.1 5.3 31 611-641 301-331 (332)
6 d1qvra2 c.37.1.20 (A:149-535) 3.4 1.4E+03 0.1 24.9 9.4 110 576-685 253-362 (387)
7 d1l2pa_ f.23.21.1 (A:) F1F0 AT 3.3 1.2E+03 0.089 19.9 8.9 60 598-657 2-61 (61)
8 d1qvra2 c.37.1.20 (A:149-535) 3.3 1.7E+03 0.13 24.1 10.1 110 579-688 253-362 (387)
9 d2ap3a1 a.24.27.1 (A:12-196) H 3.0 1.3E+03 0.098 19.9 13.1 153 547-699 31-183 (185)
10 d1is1a_ d.67.3.1 (A:) Ribosome 2.9 1.9E+03 0.14 21.6 9.6 75 615-689 107-181 (185)
No 1
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]}
Probab=17.94 E-value=17 Score=35.27 Aligned_cols=13 Identities=46% Similarity=0.777 Sum_probs=11.8
Q ss_pred CCCCccccCccCC
Q 000064 2071 SHFPLYEMNPLLG 2083 (2464)
Q Consensus 2071 ~~f~~~emn~mlg 2083 (2464)
|||.|||.|+.|=
T Consensus 38 SH~HF~E~N~aL~ 50 (101)
T d1ejxb_ 38 SHYHFAEVNPALK 50 (101)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChHHcCcccc
Confidence 8999999999885
No 2
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]}
Probab=15.40 E-value=21 Score=35.96 Aligned_cols=13 Identities=46% Similarity=0.818 Sum_probs=11.9
Q ss_pred CCCCccccCccCC
Q 000064 2071 SHFPLYEMNPLLG 2083 (2464)
Q Consensus 2071 ~~f~~~emn~mlg 2083 (2464)
|||.|||.|+.|=
T Consensus 38 SH~HF~E~N~aL~ 50 (133)
T d1e9ya1 38 SHFHFFEVNRCLD 50 (133)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChhhcCcccc
Confidence 8999999999985
No 3
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}
Probab=14.88 E-value=22 Score=35.38 Aligned_cols=13 Identities=38% Similarity=0.365 Sum_probs=11.9
Q ss_pred CCCCccccCccCC
Q 000064 2071 SHFPLYEMNPLLG 2083 (2464)
Q Consensus 2071 ~~f~~~emn~mlg 2083 (2464)
|||.|||.|+.|-
T Consensus 40 SH~HF~E~N~aL~ 52 (122)
T d4ubpb_ 40 SHIHFVEVNKELL 52 (122)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChhhcCcccc
Confidence 8999999999985
No 4
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=7.60 E-value=73 Score=30.60 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=0.0
Q ss_pred CCCCCCceEEeecc
Q 000064 48 TGGGGGGMLVLSRP 61 (2464)
Q Consensus 48 ~~~~gggm~vlsr~ 61 (2464)
|+||||+|++|.++
T Consensus 98 GaGgGG~~i~l~~~ 111 (135)
T d1k47a2 98 GAGGGDCGIALSFD 111 (135)
T ss_dssp SSCSSSEEEEEECS
T ss_pred cCcCCCeEEEEecC
No 5
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.57 E-value=4.6e+02 Score=28.07 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000064 611 AREQEEQRRRLEEETREAVWRAEQEQLEATR 641 (2464)
Q Consensus 611 aREEEERRRReEEEEREKEEREEKEReEAER 641 (2464)
.+..++.+++++++++.+++++++++.+++|
T Consensus 301 ~~a~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 331 (332)
T d1v9da_ 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 6
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=3.40 E-value=1.4e+03 Score=24.95 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000064 576 ERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQ 655 (2464)
Q Consensus 576 ERRqEeEEEEReReEEEQEREEEEaRKEEEEreReaREEEERRRReEEEEREKEEREEKEReEAERREEEERKrrEEEEr 655 (2464)
++....+.+-.+...+.+...++......++......+.++.+.....-..+-+.+.+.-....+.+++-+..+.+.+..
T Consensus 253 ~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 253 EEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000064 656 RIIMEEERRKHAAKQKLLELEERIAKRQAE 685 (2464)
Q Consensus 656 RrEEEEERRREEEEQRRqEEEERkKKrQaE 685 (2464)
.+...-++..+.......+.+++..+..++
T Consensus 333 ~r~gd~e~AaeL~y~~ip~le~el~~l~~~ 362 (387)
T d1qvra2 333 ERQYDLNRAAELRYGELPKLEAEVEALSEK 362 (387)
T ss_dssp TTTTCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHhhchHHHHHHHHHHHHHH
No 7
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=3.31 E-value=1.2e+03 Score=19.95 Aligned_cols=60 Identities=12% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000064 598 ELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRI 657 (2464)
Q Consensus 598 EEaRKEEEEreReaREEEERRRReEEEEREKEEREEKEReEAERREEEERKrrEEEErRr 657 (2464)
++....+.+..........+....-++.+.+...+...-.+..+.+-+..+.+..+..|+
T Consensus 2 e~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eLRk 61 (61)
T d1l2pa_ 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELRK 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 8
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=3.28 E-value=1.7e+03 Score=24.08 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000064 579 QKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRII 658 (2464)
Q Consensus 579 qEeEEEEReReEEEQEREEEEaRKEEEEreReaREEEERRRReEEEEREKEEREEKEReEAERREEEERKrrEEEErRrE 658 (2464)
++.+..+++...-+.+++.-...+..+..++....+.+....+++...-.++-......-.+.++.+++......+...+
T Consensus 253 ~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 253 EEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000064 659 MEEERRKHAAKQKLLELEERIAKRQAEAAK 688 (2464)
Q Consensus 659 EEEERRREEEEQRRqEEEERkKKrQaEeEK 688 (2464)
.....-.++.+..-.+...-+++.++..++
T Consensus 333 ~r~gd~e~AaeL~y~~ip~le~el~~l~~~ 362 (387)
T d1qvra2 333 ERQYDLNRAAELRYGELPKLEAEVEALSEK 362 (387)
T ss_dssp TTTTCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHhhchHHHHHHHHHHHHHH
No 9
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=3.02 E-value=1.3e+03 Score=19.90 Aligned_cols=153 Identities=5% Similarity=-0.047 Sum_probs=0.0
Q ss_pred hhhHHhhhhhhccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000064 547 LVGVVKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETR 626 (2464)
Q Consensus 547 Mle~VKKKKEeaKq~E~EEklREEeEaELERRqEeEEEEReReEEEQEREEEEaRKEEEEreReaREEEERRRReEEEER 626 (2464)
+..+..................................................................+.........
T Consensus 31 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (185)
T d2ap3a1 31 IAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKEVKQLDDV 110 (185)
T ss_dssp HHHHHHHHHTTTTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Q 000064 627 EAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADE 699 (2464)
Q Consensus 627 EKEEREEKEReEAERREEEERKrrEEEErRrEEEEERRREEEEQRRqEEEERkKKrQaEeEKrrkqAEakakE 699 (2464)
........+.............................................+...+......+.......
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ek~~ 183 (185)
T d2ap3a1 111 LKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQD 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 10
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}
Probab=2.90 E-value=1.9e+03 Score=21.55 Aligned_cols=75 Identities=16% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000064 615 EEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKS 689 (2464)
Q Consensus 615 EERRRReEEEEREKEEREEKEReEAERREEEERKrrEEEErRrEEEEERRREEEEQRRqEEEERkKKrQaEeEKr 689 (2464)
+|+|+.+....++..++....-+..++...+.-++.+.+..--+.+..+.+.+-.+--.+--++..+.-+++++.
T Consensus 107 ~E~R~elvK~~k~~~E~akv~iRniRr~~~~~ikk~~k~~~iseD~~k~~~~~iq~ltd~~~~~id~~~~~KekE 181 (185)
T d1is1a_ 107 EERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKE 181 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!