Query 000065
Match_columns 2462
No_of_seqs 498 out of 2173
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 16:15:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1789 Endocytosis protein RM 100.0 0E+00 0E+00 4523.3 135.8 2113 13-2462 2-2128(2235)
2 KOG1789 Endocytosis protein RM 100.0 3E-103 7E-108 962.8 47.2 922 907-2198 1167-2192(2235)
3 COG0484 DnaJ DnaJ-class molecu 99.6 1E-15 2.2E-20 186.7 6.2 69 1502-1612 3-74 (371)
4 KOG0717 Molecular chaperone (D 99.5 3.1E-15 6.7E-20 181.6 5.0 109 1502-1649 7-126 (508)
5 KOG0713 Molecular chaperone (D 99.5 3.1E-14 6.7E-19 169.7 5.3 71 1501-1613 14-87 (336)
6 KOG0712 Molecular chaperone (D 99.4 1.5E-13 3.3E-18 165.9 4.6 66 1504-1611 5-70 (337)
7 PRK14288 chaperone protein Dna 99.3 2.1E-12 4.5E-17 161.7 6.0 66 1503-1610 3-71 (369)
8 PRK14296 chaperone protein Dna 99.3 2.1E-12 4.6E-17 161.7 6.0 68 1501-1610 2-71 (372)
9 PTZ00037 DnaJ_C chaperone prot 99.3 4.8E-12 1E-16 160.1 6.8 68 1500-1610 25-92 (421)
10 PRK14286 chaperone protein Dna 99.2 8.3E-12 1.8E-16 156.5 5.8 68 1501-1610 2-72 (372)
11 PRK14279 chaperone protein Dna 99.2 1.3E-11 2.8E-16 155.7 6.0 66 1502-1609 8-76 (392)
12 PRK14287 chaperone protein Dna 99.2 1.2E-11 2.7E-16 154.9 5.8 67 1502-1610 3-71 (371)
13 PRK14276 chaperone protein Dna 99.2 2.3E-11 4.9E-16 153.1 6.2 67 1502-1610 3-71 (380)
14 PRK14282 chaperone protein Dna 99.2 2.4E-11 5.2E-16 152.4 6.2 67 1502-1610 3-73 (369)
15 PRK14280 chaperone protein Dna 99.1 3.4E-11 7.4E-16 151.3 6.1 66 1503-1610 4-71 (376)
16 PRK14283 chaperone protein Dna 99.1 3.2E-11 7E-16 151.7 5.8 67 1502-1610 4-72 (378)
17 PRK14299 chaperone protein Dna 99.1 3.5E-11 7.6E-16 146.5 5.7 67 1502-1610 3-71 (291)
18 PRK14298 chaperone protein Dna 99.1 3.6E-11 7.9E-16 151.0 6.0 66 1503-1610 5-72 (377)
19 PRK14297 chaperone protein Dna 99.1 4.5E-11 9.6E-16 150.5 6.5 66 1503-1610 4-72 (380)
20 PRK14285 chaperone protein Dna 99.1 4.7E-11 1E-15 149.5 6.6 66 1503-1610 3-71 (365)
21 PRK14294 chaperone protein Dna 99.1 4.1E-11 8.8E-16 150.2 6.0 68 1501-1610 2-72 (366)
22 PRK14301 chaperone protein Dna 99.1 4.7E-11 1E-15 149.9 6.3 67 1502-1610 3-72 (373)
23 PRK14277 chaperone protein Dna 99.1 5.1E-11 1.1E-15 150.2 6.0 66 1503-1610 5-73 (386)
24 KOG0716 Molecular chaperone (D 99.1 6.8E-11 1.5E-15 137.6 6.3 67 1502-1610 30-99 (279)
25 PRK14278 chaperone protein Dna 99.1 5.1E-11 1.1E-15 149.8 5.5 66 1503-1610 3-70 (378)
26 PRK14284 chaperone protein Dna 99.1 8.7E-11 1.9E-15 148.4 6.2 65 1504-1610 2-69 (391)
27 PRK14291 chaperone protein Dna 99.1 9.9E-11 2.1E-15 147.5 6.2 66 1503-1610 3-70 (382)
28 PRK10767 chaperone protein Dna 99.1 1E-10 2.2E-15 147.1 6.1 67 1502-1610 3-72 (371)
29 KOG0718 Molecular chaperone (D 99.1 1.5E-10 3.1E-15 141.5 6.5 70 1500-1611 6-81 (546)
30 PRK14281 chaperone protein Dna 99.1 1.4E-10 2.9E-15 146.8 6.3 66 1503-1610 3-71 (397)
31 PRK14295 chaperone protein Dna 99.0 1.6E-10 3.4E-15 145.9 6.3 66 1503-1610 9-81 (389)
32 PRK14289 chaperone protein Dna 99.0 3.2E-10 6.8E-15 143.2 5.9 67 1502-1610 4-73 (386)
33 PF14237 DUF4339: Domain of un 99.0 2.6E-10 5.6E-15 101.8 3.5 45 1173-1218 1-45 (45)
34 PRK14290 chaperone protein Dna 99.0 4.1E-10 8.9E-15 141.2 6.4 66 1503-1610 3-72 (365)
35 PRK10266 curved DNA-binding pr 99.0 3.9E-10 8.4E-15 138.4 5.7 66 1502-1609 3-70 (306)
36 TIGR02349 DnaJ_bact chaperone 99.0 4.7E-10 1E-14 140.3 6.2 65 1504-1610 1-67 (354)
37 KOG0691 Molecular chaperone (D 99.0 4.6E-10 1E-14 135.2 5.6 68 1502-1611 4-74 (296)
38 PRK14292 chaperone protein Dna 99.0 5.7E-10 1.2E-14 140.3 6.6 65 1504-1610 3-69 (371)
39 PRK14300 chaperone protein Dna 99.0 5.4E-10 1.2E-14 140.4 6.3 66 1503-1610 3-70 (372)
40 PHA03102 Small T antigen; Revi 99.0 9E-10 2E-14 121.6 7.2 67 1501-1610 3-71 (153)
41 PTZ00341 Ring-infected erythro 98.9 6.6E-10 1.4E-14 145.9 6.6 68 1502-1611 572-641 (1136)
42 KOG0715 Molecular chaperone (D 98.9 7.1E-10 1.5E-14 134.5 5.3 67 1502-1610 42-110 (288)
43 KOG0719 Molecular chaperone (D 98.9 9.4E-10 2E-14 125.3 5.5 66 1503-1610 14-84 (264)
44 PRK14293 chaperone protein Dna 98.9 1E-09 2.2E-14 138.1 6.1 66 1503-1610 3-70 (374)
45 cd06257 DnaJ DnaJ domain or J- 98.9 3.4E-09 7.5E-14 97.4 6.4 52 1504-1580 1-55 (55)
46 PF00226 DnaJ: DnaJ domain; I 98.9 2.9E-09 6.3E-14 101.3 6.0 54 1504-1582 1-58 (64)
47 smart00271 DnaJ DnaJ molecular 98.9 3.8E-09 8.3E-14 98.9 6.7 54 1504-1582 2-59 (60)
48 PTZ00100 DnaJ chaperone protei 98.8 1.3E-08 2.9E-13 107.3 9.9 96 1458-1579 18-115 (116)
49 PRK09430 djlA Dna-J like membr 98.8 1.9E-08 4.1E-13 121.3 10.5 91 1459-1581 152-263 (267)
50 KOG0721 Molecular chaperone (D 98.8 6.7E-09 1.5E-13 117.9 5.8 55 1503-1582 99-156 (230)
51 TIGR03835 termin_org_DnaJ term 98.6 2.2E-08 4.7E-13 129.8 5.8 66 1503-1610 2-69 (871)
52 COG2214 CbpA DnaJ-class molecu 98.6 7.2E-08 1.6E-12 110.6 7.1 56 1502-1582 5-64 (237)
53 KOG0624 dsRNA-activated protei 98.5 1.1E-07 2.4E-12 113.4 5.8 58 1503-1585 394-457 (504)
54 KOG0722 Molecular chaperone (D 98.5 6E-08 1.3E-12 111.4 2.9 56 1502-1582 32-89 (329)
55 PLN03200 cellulose synthase-in 98.5 0.00048 1E-08 100.0 40.9 296 2026-2449 421-725 (2102)
56 KOG0720 Molecular chaperone (D 98.3 2.8E-07 6.1E-12 114.0 3.3 64 1502-1590 234-299 (490)
57 PRK05014 hscB co-chaperone Hsc 98.3 6.7E-07 1.5E-11 101.5 5.8 56 1504-1582 2-65 (171)
58 PHA02624 large T antigen; Prov 98.3 7E-07 1.5E-11 115.6 6.6 58 1501-1584 9-68 (647)
59 PRK01356 hscB co-chaperone Hsc 98.2 8.7E-07 1.9E-11 100.1 4.7 56 1504-1582 3-64 (166)
60 KOG0714 Molecular chaperone (D 98.2 8.4E-07 1.8E-11 106.8 4.2 66 1503-1610 3-72 (306)
61 KOG0550 Molecular chaperone (D 98.2 2.6E-06 5.6E-11 104.6 7.4 62 1502-1588 372-437 (486)
62 PRK03578 hscB co-chaperone Hsc 98.2 2E-06 4.3E-11 98.1 5.5 57 1503-1582 6-70 (176)
63 PRK00294 hscB co-chaperone Hsc 98.1 2.1E-06 4.5E-11 97.6 4.8 57 1503-1582 4-68 (173)
64 COG5407 SEC63 Preprotein trans 98.1 1.4E-06 3E-11 106.7 3.5 55 1503-1582 98-160 (610)
65 PLN03200 cellulose synthase-in 97.7 0.0084 1.8E-07 87.9 30.0 141 2027-2171 165-314 (2102)
66 TIGR00714 hscB Fe-S protein as 97.7 3.6E-05 7.8E-10 86.6 4.9 44 1539-1582 2-53 (157)
67 PF05804 KAP: Kinesin-associat 97.6 0.016 3.4E-07 78.8 29.4 382 1658-2193 279-674 (708)
68 COG5269 ZUO1 Ribosome-associat 97.5 0.00017 3.7E-09 84.2 7.3 59 1502-1582 42-105 (379)
69 KOG1150 Predicted molecular ch 97.4 0.00015 3.3E-09 81.8 4.8 54 1504-1582 54-111 (250)
70 PRK01773 hscB co-chaperone Hsc 96.9 0.0008 1.7E-08 77.0 4.5 56 1504-1582 3-66 (173)
71 PF05804 KAP: Kinesin-associat 96.5 0.15 3.1E-06 69.8 21.9 122 2039-2170 278-400 (708)
72 KOG0723 Molecular chaperone (D 96.5 0.0063 1.4E-07 63.4 6.8 58 1498-1581 51-108 (112)
73 KOG0568 Molecular chaperone (D 96.2 0.0078 1.7E-07 69.3 6.5 56 1501-1581 45-103 (342)
74 KOG4224 Armadillo repeat prote 95.6 0.8 1.7E-05 57.0 19.9 190 2037-2243 319-524 (550)
75 PF02213 GYF: GYF domain; Int 94.9 0.021 4.5E-07 54.2 3.0 44 1172-1215 1-44 (57)
76 KOG0166 Karyopherin (importin) 94.0 15 0.00032 49.1 26.6 159 2026-2193 254-416 (514)
77 cd00072 GYF GYF domain: contai 94.0 0.074 1.6E-06 50.6 4.5 51 1172-1222 2-53 (57)
78 cd00020 ARM Armadillo/beta-cat 91.7 1.3 2.7E-05 46.2 10.5 111 2050-2168 6-119 (120)
79 COG1076 DjlA DnaJ-domain-conta 90.9 0.18 4E-06 58.1 3.5 51 1503-1578 113-173 (174)
80 cd00256 VATPase_H VATPase_H, r 89.2 26 0.00056 46.3 20.9 291 2026-2352 71-409 (429)
81 smart00444 GYF Contains conser 86.8 0.95 2.1E-05 43.2 4.5 50 1172-1221 1-50 (56)
82 PF10508 Proteasom_PSMB: Prote 86.1 9.1 0.0002 51.4 14.7 119 2026-2150 136-257 (503)
83 PF10508 Proteasom_PSMB: Prote 85.9 7.2 0.00016 52.4 13.7 139 2027-2174 95-235 (503)
84 cd00020 ARM Armadillo/beta-cat 85.6 13 0.00028 38.6 12.9 93 2097-2196 8-103 (120)
85 PF03656 Pam16: Pam16; InterP 85.5 1.9 4.1E-05 47.7 6.6 57 1499-1581 54-110 (127)
86 PF04826 Arm_2: Armadillo-like 85.3 13 0.00027 45.9 14.2 170 1095-1331 15-186 (254)
87 KOG0431 Auxilin-like protein a 84.0 0.97 2.1E-05 59.4 4.2 40 1539-1578 399-448 (453)
88 PF06017 Myosin_TH1: Myosin ta 83.5 5.3 0.00011 47.2 9.7 90 292-382 61-156 (199)
89 PF06371 Drf_GBD: Diaphanous G 82.2 2.6 5.7E-05 48.4 6.5 88 1661-1753 99-186 (187)
90 PF04826 Arm_2: Armadillo-like 80.2 9.9 0.00021 46.8 10.6 159 2027-2197 72-232 (254)
91 KOG2160 Armadillo/beta-catenin 79.1 16 0.00035 46.5 12.1 123 2042-2169 115-240 (342)
92 PF06025 DUF913: Domain of Unk 74.5 29 0.00063 45.2 13.0 164 1112-1343 3-174 (379)
93 cd01216 Fe65 Fe65 Phosphotyros 74.0 11 0.00024 41.5 7.9 79 134-221 35-114 (123)
94 PF06017 Myosin_TH1: Myosin ta 73.6 6.5 0.00014 46.5 6.4 86 21-116 51-143 (199)
95 KOG4199 Uncharacterized conser 71.5 82 0.0018 40.1 14.9 73 2098-2170 243-317 (461)
96 PF12348 CLASP_N: CLASP N term 69.5 44 0.00095 39.8 12.2 201 498-734 23-227 (228)
97 cd00934 PTB Phosphotyrosine-bi 69.3 15 0.00032 39.3 7.5 78 135-220 38-117 (123)
98 KOG2734 Uncharacterized conser 69.0 22 0.00048 46.2 9.7 127 2035-2168 109-254 (536)
99 KOG4199 Uncharacterized conser 69.0 40 0.00087 42.7 11.6 131 1097-1327 246-378 (461)
100 smart00462 PTB Phosphotyrosine 69.0 16 0.00034 39.9 7.7 78 135-220 40-119 (134)
101 PF00514 Arm: Armadillo/beta-c 67.5 5.4 0.00012 35.1 3.1 39 1269-1307 2-40 (41)
102 PF05536 Neurochondrin: Neuroc 67.3 52 0.0011 44.9 13.5 94 2068-2170 71-169 (543)
103 PF11841 DUF3361: Domain of un 65.4 87 0.0019 36.4 12.7 151 1127-1350 4-154 (160)
104 cd01203 DOK_PTB Downstream of 64.7 22 0.00047 38.3 7.3 68 140-221 22-93 (104)
105 KOG0166 Karyopherin (importin) 64.6 17 0.00037 48.6 7.9 137 2026-2168 169-307 (514)
106 PF00640 PID: Phosphotyrosine 64.6 26 0.00057 38.4 8.4 108 103-221 20-129 (140)
107 PF05918 API5: Apoptosis inhib 64.1 1.3E+02 0.0028 41.2 15.8 255 2104-2432 49-322 (556)
108 PF02174 IRS: PTB domain (IRS- 63.0 21 0.00047 37.9 7.0 75 134-222 17-95 (100)
109 PF13446 RPT: A repeated domai 61.7 13 0.00029 35.9 4.8 48 1500-1580 2-49 (62)
110 KOG2171 Karyopherin (importin) 57.5 7.4E+02 0.016 36.6 21.6 88 2097-2188 119-207 (1075)
111 KOG4224 Armadillo repeat prote 57.2 24 0.00051 44.8 6.9 107 1655-1776 194-302 (550)
112 PF03224 V-ATPase_H_N: V-ATPas 56.1 40 0.00087 42.5 9.0 133 2026-2162 167-307 (312)
113 PF08416 PTB: Phosphotyrosine- 55.9 22 0.00047 39.7 5.8 87 134-225 34-124 (131)
114 COG5064 SRP1 Karyopherin (impo 53.9 2.6E+02 0.0056 35.9 14.6 76 2072-2148 346-426 (526)
115 smart00185 ARM Armadillo/beta- 52.0 16 0.00035 31.3 3.2 37 1271-1307 4-40 (41)
116 KOG2759 Vacuolar H+-ATPase V1 46.5 5.1E+02 0.011 34.5 16.1 294 2026-2352 83-422 (442)
117 KOG3192 Mitochondrial J-type c 43.4 27 0.00058 39.9 4.0 43 1540-1582 22-72 (168)
118 PF08045 CDC14: Cell division 41.2 37 0.0008 42.0 5.1 76 1073-1148 114-190 (257)
119 PF03224 V-ATPase_H_N: V-ATPas 40.7 3.9E+02 0.0085 33.8 14.3 97 1699-1817 167-269 (312)
120 cd00824 PTBI IRS-like phosphot 39.6 88 0.0019 33.9 7.0 73 138-224 20-96 (104)
121 PF00514 Arm: Armadillo/beta-c 39.4 60 0.0013 28.6 4.9 40 2126-2169 2-41 (41)
122 PF05536 Neurochondrin: Neuroc 39.3 1.1E+02 0.0025 41.7 9.8 131 2033-2170 80-214 (543)
123 KOG1222 Kinesin associated pro 39.2 99 0.0021 40.8 8.4 76 2325-2442 372-449 (791)
124 PF15277 Sec3-PIP2_bind: Exocy 38.9 36 0.00077 35.8 3.9 77 33-115 1-87 (91)
125 KOG2023 Nuclear transport rece 37.1 1.2E+02 0.0027 41.6 9.0 104 2291-2436 212-315 (885)
126 PF06371 Drf_GBD: Diaphanous G 35.5 71 0.0015 36.8 6.1 55 498-552 132-186 (187)
127 COG1076 DjlA DnaJ-domain-conta 33.7 36 0.00079 39.6 3.4 42 1541-1582 16-65 (174)
128 PF13764 E3_UbLigase_R4: E3 ub 32.6 8.1E+02 0.018 35.5 16.3 106 2070-2187 138-255 (802)
129 KOG2160 Armadillo/beta-catenin 32.5 2.7E+02 0.0059 36.0 10.8 68 2109-2183 97-164 (342)
130 PF04858 TH1: TH1 protein; In 32.1 5.2E+02 0.011 36.0 14.0 168 2022-2197 377-565 (584)
131 cd01273 CED-6 CED-6 Phosphotyr 30.7 1.5E+02 0.0032 33.6 7.5 35 136-170 52-86 (142)
132 KOG0724 Zuotin and related mol 29.8 50 0.0011 42.2 4.0 52 1540-1592 4-62 (335)
133 cd01210 EPS8 Epidermal growth 28.7 1.3E+02 0.0029 33.6 6.4 82 133-219 35-120 (127)
134 cd01267 CED6_AIDA1b Phosphotyr 27.7 1.9E+02 0.0041 32.2 7.6 79 135-221 41-123 (132)
135 PF08167 RIX1: rRNA processing 25.8 94 0.002 35.9 4.9 60 1242-1312 86-147 (165)
136 PF09380 FERM_C: FERM C-termin 25.7 89 0.0019 32.2 4.3 56 39-103 8-63 (90)
137 KOG2171 Karyopherin (importin) 25.5 6.2E+02 0.013 37.3 13.2 154 2027-2196 267-443 (1075)
138 cd01202 FRS2 Fibroblast growth 25.5 1.6E+02 0.0034 31.9 5.9 82 126-223 8-93 (102)
139 KOG1824 TATA-binding protein-i 25.4 2.3E+02 0.0051 40.5 8.9 128 526-677 695-824 (1233)
140 cd00836 FERM_C FERM_C domain. 25.3 1.3E+02 0.0027 31.4 5.3 59 35-103 14-72 (92)
141 COG4687 Uncharacterized protei 25.3 78 0.0017 34.4 3.7 84 25-115 10-96 (122)
142 KOG1862 GYF domain containing 24.8 66 0.0014 45.1 4.1 41 1169-1209 201-241 (673)
143 PF08045 CDC14: Cell division 23.7 1.3E+03 0.028 29.2 14.1 95 498-615 107-206 (257)
144 cd01271 Fe65_C Fe65 C-terminal 20.6 2.9E+02 0.0064 31.0 7.0 92 106-220 20-114 (124)
145 smart00310 PTBI Phosphotyrosin 20.4 2.9E+02 0.0063 29.8 6.7 68 140-221 21-92 (98)
146 PF06025 DUF913: Domain of Unk 20.3 79 0.0017 41.3 3.2 35 1112-1146 339-373 (379)
147 PF11833 DUF3353: Protein of u 20.1 1.6E+02 0.0035 35.2 5.5 38 1538-1580 2-39 (194)
No 1
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=4523.29 Aligned_cols=2113 Identities=33% Similarity=0.532 Sum_probs=1946.0
Q ss_pred CCCCCCCccEEEEEEEeecccccccEEEEEecCeeeeeCCCCcccccccccccccccccccccCCCC---CCcEEEEEee
Q 000065 13 HPPPEETEYLARYLVVKHSWRGRYKRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDN---ANEFNISVRT 89 (2462)
Q Consensus 13 ~~~~~~~~~~a~y~vtKhSWrgkYkRIf~Ig~~~i~T~nP~tl~vTN~W~y~~d~~~i~p~~~~~~~---~~eF~i~~rk 89 (2462)
++.++||+|+|||+|||||||||||||||||+.||+||||+|++|||||.| +||++++|.++.+++ ++||+|++|+
T Consensus 2 ~~~~~e~~~~a~ylv~khsw~g~ykri~~i~s~~i~t~~pntl~itn~~~~-~~f~~~~pl~~~~~~~s~~~e~~i~vr~ 80 (2235)
T KOG1789|consen 2 AQFCSENRDIACYLVTKHSWKGKYKRVFSIGTLAITTYNPNTLEITNQWLY-EDFLSVKPLRNGGSNDSKQDEYKIHVRN 80 (2235)
T ss_pred CcccccchhhhheeeeecccccceeEEEEecccceEeecCcceeeechhhh-hcccccCcccCCCCccccCceeEEEEec
Confidence 567999999999999999999999999999999999999999999999999 899999998766543 3699999999
Q ss_pred cCCCcccceeeehhhhhHHHHHHHHhhhhhcccccCCccccccccCCcccceEEEEeeceEEEecCCCCceEEEeeccCC
Q 000065 90 DGRGKFKAFKFSSRFRASILTELHRIRWVRLNAVAEFPVLHLRRRNSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDM 169 (2462)
Q Consensus 90 ~~~~K~~~mkFss~~Ra~lLT~l~r~r~~~~~~~~~~~~~~~~~~k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~ 169 (2462)
+| |++.|||||++|++|||+++|+ +..++.++|.+++.+++|..|+|.+|.||-. ++|.-+|.+|||+|
T Consensus 81 ~g--k~~~m~fss~~~~~ilt~~l~~--~~~~~~~~f~~l~~~~~~~~w~~~~~~it~~-------~~~~~~~~~d~r~~ 149 (2235)
T KOG1789|consen 81 RG--KNNDMRFSSDYTTDILTHCLQF--STKFADKNFEPLTVTAFKQSWSDRRIPVTLR-------ANASCLEQIDNRGV 149 (2235)
T ss_pred CC--ccccccccccchHHHHHHHHHh--hhhccccccceEEEeecccccccccceeEEE-------ecCcchheecccCc
Confidence 74 7999999999999999999654 4778899999999999999999888888754 56778888888888
Q ss_pred CccceeeeccccCCCC-CCCcEEEeeccCCCccccccCCCCChHHHHHHHHHHHhhhcCeEEEecCCCCCCHHHHHHHHH
Q 000065 170 DSPAIVLLSDAYGKRS-ETGGFVLCPLYGRKSKAFQAAPGTTNSAIVSSLTKTAKSMVGLSLSVDSSQPLSVAEYIKRRA 248 (2462)
Q Consensus 170 ~~~~i~~l~d~~~~~~-~~~gfvl~~~~g~~~r~~l~~~~~~~~~ii~~i~~~A~~~~G~~i~~~~~~~it~~~~~~~R~ 248 (2462)
.+++|..++|.|-+|. +.-||++||+||+++|.|.++ .++++|+++|.+.|++++|+-+.+++ +.++.++|+..|+
T Consensus 150 ~~~~~~~~~~~~~~k~~d~~g~~~~~~~~~~~~~~~a~--s~n~~~v~~~~~~a~~~igi~~~i~~-~ql~~~~~~~tr~ 226 (2235)
T KOG1789|consen 150 VVQSYPYKNIRSIGKVSDCPGGFVVDVGEHRRRHMFAS--SNNEELVKEIRRLASDNIGIIVPIAK-EQLTLEDFMRTRL 226 (2235)
T ss_pred cccceeeechhhhccccCCCCeeEecccchhhhhHhhc--cCcHHHHHHHHHHhhhceeEEEEcch-hhhhhHHHHHHHH
Confidence 8888888888774444 777888999999988876654 48999999999999999999999998 4888999999999
Q ss_pred hhhcC-CCCCcccceeEEEEeecccCcccccCcccccCCCCCCCCCCCcceEEEEeccceeeeecCCccceEEeeeccce
Q 000065 249 KEAVG-ADETPCGGWSVTRLRSAAHGTLNVSGLSLGIGPKGGLGEHGGAVSRQLILTRVSLVERRPDNYEAVIVRPLSAV 327 (2462)
Q Consensus 249 ~~~~~-~~~ts~~ef~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~L~Lt~~~lvERdp~tY~vv~~rpL~~i 327 (2462)
|+.+. +++||.+||+|+||+ |+..-||+|+||||++||||||-+||+||++|||+.|
T Consensus 227 ~~~~~~~e~t~~~~~~is~~~----------------------~~~~mpv~~~l~ls~~~~ier~~~~y~vi~~~pl~~i 284 (2235)
T KOG1789|consen 227 GLCSRDEELTSYAEFKISKIT----------------------RRNEMPVRRLLCLSETCIIERDLATYAVICATPLKHI 284 (2235)
T ss_pred hhhhcccccCCcceEEeeeec----------------------ccccccHHHHHHHhHhHHhhhhccceeEEEecchhhH
Confidence 88766 556999999999985 1355799999999999999999999999999999999
Q ss_pred eEEeecCCCCceEEEEecCCccceeeccCchhHHHHHHHHHHHhhCCCCeeeecccCCCCCccCCCCcccccccccCCCC
Q 000065 328 SSLVRFAEEPQMFAIEFNDGCPIHVYASTSRDSLLAAVRDVLQTEGHYPVPVLPRLTMPGHRIDPPCGVVHMQVRKQRPV 407 (2462)
Q Consensus 328 ~aLVR~~~dpQ~f~IEf~dG~~~r~Y~s~~RD~LLAsllD~~ra~Gn~~V~V~~~~t~rg~r~~p~~~~~~~~~~p~~~~ 407 (2462)
.||||+++|||+|+|||.||| .+.|..+.||-.+++++|++|++||+.|.|.. ||+
T Consensus 285 ~~lvr~~~~pq~f~ie~~~g~-~~~~~~~~~~l~~~s~~~~i~~~~~~~~~i~g------h~~----------------- 340 (2235)
T KOG1789|consen 285 VCLVRSEKDPQQFIVEYENGD-GRAYVAAERDLILASLLDGIRASGNNEVFVCG------HRF----------------- 340 (2235)
T ss_pred HHHHhcccCchheEEEecCCC-cceeecccchhhhhhccCccCCCCCceEEEec------chh-----------------
Confidence 999999999999999999998 99999999999999999999999999999865 333
Q ss_pred CCchhHHHHHHHHHHHhhhhhhhcCCCCCchHHHHHHHHHhccCCCCCCCCCcccchhHHHHHHHHhCCCCCCCCCCCCC
Q 000065 408 ADMESTSMHLKHLAAVAKDAVAESGQVSGSRAKLWRRIREFNACIPYSGVPPSVEVPEVTLMALITMLPSTPNLPPESPP 487 (2462)
Q Consensus 408 ~d~E~es~~Lk~l~~~~k~~~~~~~~~p~~~~~~~~~v~~FNAnIpysGl~~~~~~~~~~~~al~~~l~~~~~~~~~~~~ 487 (2462)
.|-|.-+.|+++|++.+|+++..||..|+.++++|++||||||||||||++++ +.+|+.+|++..+++.+++++.+.+|
T Consensus 341 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~r~~~~ir~fna~ipysg~~~~-~~~e~~~~~~~~~~~~~~~~~v~~~~ 419 (2235)
T KOG1789|consen 341 ERNLRVIPFSTNLDEDSESQCMKHIIAPPPGLRRCDLIRRFNANVPYSGLRFS-KSHEGFFSENKGKVIVNAIEAVLMEN 419 (2235)
T ss_pred hhcceeccchhhhhhhhHHHHHcCCCCCCccchHHHHHHHhccCCCccCCccc-cCccchHHhhccccccCccccccCCC
Confidence 55666677888888888888888999999889999999999999999999999 88899999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhcHHhhHhhhcchhhhhhHHhhhccCCcchHHHH----HHHHHHHhcCCCCCCcccc
Q 000065 488 LPPPSPKAAATVMGFVACLRRLLTSRTAASHVMSFPAAVGRIMGLLRNGSEGVAAEA----AGLIAILIGGGSGDTNMLT 563 (2462)
Q Consensus 488 l~~~~~~~a~~~~~~~~aLrRL~as~~gf~~~~~~p~~~~~v~~~L~~~~~~v~~~a----~~~l~~l~~~~~~~~~~~~ 563 (2462)
+||++++.+++++++++|||||++||.||++||++|+.+.+|+.+++|+.++++.++ +.+||.+|.||++. +
T Consensus 420 ~~~~~~~~~~~~~~~~~clrrl~~s~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 495 (2235)
T KOG1789|consen 420 YTKDDKEYKHKTEAQLQCLRRLFASKSGFQAFTEVNGVREKLGSLVVRVLSWKSESIDHSTVEALCALMYPMHDQ----Y 495 (2235)
T ss_pred CCCCChHHhhHHHHHHHHHHHHHhcchhhHHHhhchHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHhcCccccc----h
Confidence 999999999999999999999999999999999999999999999999999877665 56777888888877 8
Q ss_pred CchhhhhhhhcccchhcccchhhHHHHHHhhcCCCChhHHHHHHHHHHHhhccCCCCCCCChHHHHHHHHHHHhhhhHHH
Q 000065 564 DSKGEQHATMMHTKSVLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMICEPHSETTQYTVFVELLRQVAGLRRRLF 643 (2462)
Q Consensus 564 d~~~e~~~~~~~nKs~ll~~~~~~~~L~~~l~~~~~~alv~~a~l~~l~~~lC~P~seTT~~~~f~~ll~~va~~gr~lf 643 (2462)
|+|.|||++++|.||.+|..+++.-+++++++ ++|+|++|+|++||||++|.||||||.|++|+.+|++|+.+||+||
T Consensus 496 ~~r~e~~~~~~~~~s~~f~~~~~~~i~~~~~~--s~~~l~~~~~~~~~~~~vc~p~~ett~~~~f~~~l~~i~~~~r~~f 573 (2235)
T KOG1789|consen 496 ELRIEQLNKQSLMSSPKFVENLLDLIVLHVDR--STGWLVIASMLNFLTFSVCSPYSETTAGDTFDHILKLVSLRGRSFF 573 (2235)
T ss_pred hhHHHHHHHHHhhccHHHHHhchheEEEeecc--cccHHHHHHHHHHHHhcccCCCcccccccHHHHHHHHHHHhhhHHH
Confidence 99999999888888888888888888888888 6999999999999999999999999999999999999999999999
Q ss_pred HhhCCCchhHHhHHHHHHHHHHhhcHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChhHHhhhh
Q 000065 644 ALFGHPAESVRETVAVIMRTIAEEDAIAAESMRDAALRDGALLRHLLHAFFLPAGERREVSRQLVALWADSYQPALDLLS 723 (2462)
Q Consensus 644 ~Lf~hp~~~i~~~aglimrai~Ee~~~~a~~mq~~AL~eGall~HL~~A~f~~~~~~r~lsr~LV~lW~~~~~~a~~LL~ 723 (2462)
+|||||+++|+|++|+|||+|||||+..+++||++||+|||+|+||..||..+..++||||||||+||+++|++|.|||.
T Consensus 574 ~lf~~p~~si~~~~~~imr~i~ee~~i~~~sm~~~al~~ga~l~hl~~~~~l~~~~~~~~s~~li~lw~~~~q~a~dll~ 653 (2235)
T KOG1789|consen 574 RLFQCPSMTIVKGAGMVMRAIIEEADVETKSMQMLALSEGAFLTHLFMSLLLRVMTNKQLSGHLISLWIADNQQANDLLI 653 (2235)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccchHHHHHHHHHhhhhhhhhHHhhhHHHHHhhccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhHhhhcccCCCCCCccchhcccchhHHHHHHHHHhhcCCCCCCcccccccCCcccccccCCcccccccccCCCCC
Q 000065 724 RVLPPGLVAYLHTRSDGVLSEDANLEGSLTSRRQRRLLQQRKGRPGRGIASQEHSVPYVNNVEANDPTRQKTSAFRGPGS 803 (2462)
Q Consensus 724 RilP~gLl~yL~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 803 (2462)
|++|+||++|++|++++++.|.+. ++. +.|-+ .++.++.+.+ +| +
T Consensus 654 r~lp~gl~~y~~s~~~~~v~~~d~-~~~---~~n~d--------aa~~~s~~~~-~~---------------------~- 698 (2235)
T KOG1789|consen 654 RCLPRGLLNYMESDEKVPVNEKDL-LIV---RNNFD--------AASNETKQNA-MK---------------------E- 698 (2235)
T ss_pred HhCCHHHHHhhhcCCCCCcCchhh-ccc---ccCch--------hhhhhhhhcc-ch---------------------h-
Confidence 999999999999998888877654 221 22221 1121111000 00 0
Q ss_pred CcccCCCCCCCCcccCCCccccccCccccCCCCCCCCCCCCcccccccCCCccCccccCCCCcCcCCCccccccCCCCCC
Q 000065 804 HQTSNLDPSSGQASAFQSPAARSGENLVSDIPYMGFSQNDHPAVVATADSPLRGVHESLDPKATSSVDSDANAVGFQNTD 883 (2462)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 (2462)
+++++.+.+ .+++|.+. ++|+ -++..
T Consensus 699 -------------------------------------~f~~~~~sa---------~~g~~~~i---~~~~-----~~~~~ 724 (2235)
T KOG1789|consen 699 -------------------------------------KFDQLRVTA---------EAGLERFV---QHWD-----LEQKL 724 (2235)
T ss_pred -------------------------------------hhcCccccc---------cccHHHHH---HHhh-----hhhhc
Confidence 000110000 12222222 2333 24556
Q ss_pred CCCCcceeecccccCCCcccCCHHHHHHHHhcccCCCccccCHHHHHHHHHHHHHHHhhhhHHhhhcccCCCCCCccccc
Q 000065 884 IPAPAQVVVESTPVGSGRLLLNWPEFWRAFSLDHNRADLVWNERTRQELREALQAEVHKLDVEKERTEDIVPGGATLETM 963 (2462)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~nW~~f~~~~~~Dh~~p~lIWn~~tR~ELr~aL~~Ei~~f~~~~~~~~~~~~g~~~~~~~ 963 (2462)
.+.|.|++++++.+++++...||+.||.+| ++|||||++||+|||+|+.+|.+.++.+||++.+
T Consensus 725 ~~~p~~vi~e~~~~~~~~~~l~~r~~~~~~-----~adliwne~tr~e~~~a~~~e~~~l~~eke~~~~----------- 788 (2235)
T KOG1789|consen 725 NFLPKRVIDEKQQQRQQPVVLRKRRNRVRP-----NADLIWNEKTREEFRHAMDTETRALISEKEQAPT----------- 788 (2235)
T ss_pred ccccHHHhhHHhhhccCCeeeehhhhhcCc-----CcccccchhhHHHHHHHHHHHHHHhhhhhhhCCC-----------
Confidence 789999999999999999999999999999 8999999999999999999999999999998655
Q ss_pred cCCCCCCccccccCcceeeccCcccceeeccchhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHhccccCccccCCCC
Q 000065 964 TGQDSVPQISWNYPEFSVSYPSLSKEVCVGQYYLRLLLESGSSGRAQDFPLRDPVAFFRALYHRFLCDADIGLTVDGAIP 1043 (2462)
Q Consensus 964 ~~~~~~~~i~WN~~eF~V~Y~sL~~Ev~vg~yYLRlLle~~~~~~~~~~~I~~p~~Ff~~ly~rfL~~~~~~~~~~~~~~ 1043 (2462)
...|+|||.||+|+|+||.+|+|||+||||+||++++. -++||+||++||+.|||||+|..|.
T Consensus 789 -----~~pi~wn~sef~i~y~sl~~ei~ig~yylrlll~~~~~---~~~p~~~p~~ff~~~yhrf~~~~~~--------- 851 (2235)
T KOG1789|consen 789 -----GLPIAWNHTEFQIRYPSLLEEIKIGDYYLRLLLIEADE---NATPIHNPLEFFNNVYHRFLLSTKV--------- 851 (2235)
T ss_pred -----CCccccccceeeeechhhHhhhhHhHHHHHHHHHhccC---CCCcccCHHHHHHHHHHHHhccccc---------
Confidence 23599999999999999999999999999999999887 4899999999999999999998864
Q ss_pred CcCCCCCccccCCCCcCCCCCCCchhHHHHHHHHHHHHHhhhcccCCCCChhHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 000065 1044 DELGASDDWCDMGRLDGFGGGGGSSVRELCARAMAIVYEQHYTTIGPFEGTAHITVLLDRTDDRALRHRLLLLLKVLMKV 1123 (2462)
Q Consensus 1044 ~~l~~s~d~~~~~~~~~~~~~~~~~~r~lcL~am~ivY~r~~~~ig~f~~~~y~~~Ll~~t~d~~~R~~lll~~~~L~~~ 1123 (2462)
+|||||++||+|+|+||+.+||||.|++|++.|+++|.||.+||||++++.+|.++
T Consensus 852 ------------------------~~~~lc~ramai~y~~h~~tig~f~~s~~~~~~~~~~~~~~~r~~l~lll~~l~~~ 907 (2235)
T KOG1789|consen 852 ------------------------DMKCLCLRAMAITYSRHHMTIGAFQDSKYFVEMLQKCINPLERDHLVLLLSKLALN 907 (2235)
T ss_pred ------------------------cHHHHHHHHHHHHHHHhcccccccCccHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Confidence 29999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHhCCchHHHHHHHhhhhcccCCccccccchhhcccccCCcceeEeecCCCcccccccHHHHHHHHhcCCcCc
Q 000065 1124 LANIEACVLVGGCVLAVDLLTVVHETSERTAIPLQSNLLAATAFMEPFKEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDW 1203 (2462)
Q Consensus 1124 ~~N~~~~v~~~G~~llvdLltlah~~~~~~~~~~q~n~i~a~~~~~~~KEWyy~~~~g~~~GPvs~~eLk~l~~~g~I~~ 1203 (2462)
+.||++||-.||+.++|||++++|+|++|+.||+|+|+|+|+++|+++|||||++++|+++||++|+.||.||.++.|++
T Consensus 908 ~~nv~~~ii~~~~~l~vdl~~~~h~~~~r~~i~~qsn~i~asa~~~~~~ew~y~dk~~~~vgp~~~~~~~sl~s~k~i~~ 987 (2235)
T KOG1789|consen 908 KDNVRELIISNILPLLVDLCVLAHLHVQRAKVQNQTNVIEASAEQMAEEEWYYHDKDAKQVGPLSFEKMKSLYTEKTIFE 987 (2235)
T ss_pred hccchhheeecchHHHHHHHHHHHHhhhccCCccchhHHHhhhhhcCchhheeecCCccccCchhHHHHHHHhcccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecccCcchhhhhhhHHHHHHHhhcCCcCChhhHHHHHHHHHHHHhccccCCCCCCCccccCcchhhhccCCCchHH
Q 000065 1204 TTRCWASGMLDWKKLRDIRELRWALAVRVPVLTPTQVGEAALAILHNMVSAHSDLDDAGEIVTPTPRVKWILSSSRCLPH 1283 (2462)
Q Consensus 1204 ~T~~Wa~Gm~~W~~l~~ipqLrW~la~g~~vl~~~~l~~~~L~iL~~~~~~~p~~d~~g~~i~P~Prvkr~Ls~~~~Lph 1283 (2462)
+|+|||.||++|+++++||||||+++...||||+++++.+||+||+.||++||++|++|+|++|+|+|||+||++.||||
T Consensus 988 ~s~~~a~gm~~w~~l~~i~~~rw~v~~~ipv~~~s~~~~~~l~~L~~Mc~~fpsrD~~~~IvrP~P~VKR~LS~~~CLPH 1067 (2235)
T KOG1789|consen 988 KSQIWAAGMDKWMSLAAVPQFRWTVCQQIPVMNFTDLSVLCLDTLLQMCEFFPSRDSHDCIVRPMPSVKRQLSEPVCLPH 1067 (2235)
T ss_pred HHHHHHhhhhHHHhhhhhhhhhhhhhhcccccCHHHHHHHHHHHHHHHHhhCCCcccCCCeeccChHHHHHhcCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCchHHHHHHHHHHHHHhhChHHHHHHHhhhHHhhhhhcCCCChhhHHHHhhhhhhhhcccCCccccccCCch
Q 000065 1284 IAQAMLSGEPSIVEAAAALLKAVVTRNPKAMIRLYSTGAFYFALAYPGSNLYSIAQLFSVTHVHQAFHGGEEAAVSSSLP 1363 (2462)
Q Consensus 1284 lvQlLLt~~p~lve~~~~LL~~l~~~n~~~~~~Ly~tG~f~f~L~y~gsn~~~ia~lL~~~H~~Qa~~~~~~~~~~s~~~ 1363 (2462)
|+|+||||+|.|||+++.||+.+|+|||. |+|||++|||||+|||+|||++|||+||++||++|||++++ +++.+
T Consensus 1068 I~QlLLt~eP~iVE~vA~LLy~vmqdNp~-lpRLYlsGvFyFilmY~GSNvlpiArfl~yTH~kQAF~st~----~~~~~ 1142 (2235)
T KOG1789|consen 1068 IVQLLLTYEPQIVERVALLLYLVMQDNPF-LPRLYLSGVFYFILMYNGSNVLPIARFLHYTHMKQAFRSTL----PQFEG 1142 (2235)
T ss_pred HHHHHhcCChhHHHHHHHHHHHHHhcCch-hHHHHhhchhheeeeeCCCchhhHHHHHHHHHHHHHHHhcc----ccccc
Confidence 99999999999999999999999999995 99999999999999999999999999999999999999765 46789
Q ss_pred hhhhhhhcCCCcHHHHHHHHhcCHHHHHHHhccCCCCcccccchhhhhHHHHHHHHHHhcCCccccccccccccccCCCC
Q 000065 1364 LAKRSVLGGLLPESLLYVLERSGPAAFSAAMVSDSDTPEIIWTHKMRAENLIRQVLQHLGDFPQKLSQHCHSLYEYAPMP 1443 (2462)
Q Consensus 1364 ~~~rSvL~~lLPe~lv~~Le~~~p~~fa~~l~~~~dtPevIWn~~MR~~~Li~~i~~hl~df~~rL~~~~~alY~~~p~p 1443 (2462)
+.+|||||.+|||+|++|||++||++|+++|+|++||||+|||++||+ +||++|.+||+||++||++|+|++|+|||||
T Consensus 1143 ~~qRSvLG~lLPEa~~~yLE~ygPekFae~flgefDTPEiIW~~~MRr-~lIe~ia~HLaDf~~rL~sn~raLYqYcPiP 1221 (2235)
T KOG1789|consen 1143 QRQRSVLGTLLPEAATFYLEQYGPEKFAEVFLGEFDTPEIIWNTAMRR-HLIERIAVHLADFSHRLTSNVRALYQYCPIP 1221 (2235)
T ss_pred HHHHHHHhhhcHHHHHHHHHhhChHHHHHHHhccCCChHHHHHHHHHH-HHHHHHHHHHhccCHhHHHhHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred CCcccchhhhhhhhHHHHHHhhhhccCCCCChhhhHHHHHHHHHHHHHHhhcCCCCCchHHHHHHhcCCccCCCCCCccc
Q 000065 1444 PVTYPELKDEMWCHRYYLRNLCDEIQFPNWPIVEHVEFLQSLLVMWREELTRRPMDLSEEEACKILEISLDDVSSDDSHK 1523 (2462)
Q Consensus 1444 ~i~Y~eL~~El~C~~yYLr~lcd~~rfP~wpi~dP~~fL~sll~~wr~e~~~~~~~~s~~~ay~iLgi~~~~~~~~~~~~ 1523 (2462)
+|.||||++|||||.|||||+||+++||||||.||+.||++++.+|++|++|+|+.||+++||+||+++.+..
T Consensus 1222 ~i~YPeL~~ElfCh~YYLr~LCD~~rFPdWPI~dpV~fL~~~L~~W~~ElekKP~~mS~d~A~eiL~i~l~n~------- 1294 (2235)
T KOG1789|consen 1222 LIDYPELAQELFCHVYYLRHLCDKQRFPDWPIRDPVPFLRCCLATWYNELEKKPATMSVDLAREILSVDLTNE------- 1294 (2235)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhccccCCCCcccCchHHHHHHHHHHHHHHhcCCCccchHHHHHHhccccCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996432
Q ss_pred cccchhhcccccccCCCCH-HHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhhc-cccCCCCCChhhHHhhhhhcc
Q 000065 1524 SYSSEEMSNISKKIENIDE-EKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQA-TMQGLQGPQPWRLLLLLKGQC 1601 (2462)
Q Consensus 1524 ~~~~~~~~~~sk~~~~a~e-~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLsd-~~~r~~~p~~~~~~liLr~qr 1601 (2462)
..|+ ++|||+|||||+||||||||+|+|+|.+||+|||.|+. ..+..+|||||++.++||+|+
T Consensus 1295 ---------------~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~~ta~~~~GPdP~riiL~LKaQs 1359 (2235)
T KOG1789|consen 1295 ---------------EHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSSETANNSGGPDPHRIVLCLKAQS 1359 (2235)
T ss_pred ---------------CcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHhhcCCCCChhHhhHHHHhHH
Confidence 2233 89999999999999999999999999999999999995 456789999999999999999
Q ss_pred ccccccCCcCCCCccCccccccccccccCCCCCCCccCchhHHHHHHHHHhhhcccCCCchhhHHHhcCHHHHHHHHHHh
Q 000065 1602 ILYRRYGDVLEPFKYAGYPMLLNAVTVDEDDNNFLSSDRAPLLVAASELLWLTCASSSLNGEELVRDGGIQLLSTLLSRC 1681 (2462)
Q Consensus 1602 ~~Ydr~g~~l~py~y~Gy~~Ll~~i~~e~~d~~ffs~~~~~ll~~A~El~~~Tv~~S~lNaeeL~re~G~~~L~~~l~rC 1681 (2462)
++|.|||++++||||+|||||+++|+++++|+.|||..++|++.+|.||+.+||+||+||||||+||||+++|.++|+||
T Consensus 1360 ILy~Ry~~~L~PyKYAGYPMLi~tiT~e~~D~~lfSk~~~PLL~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRC 1439 (2235)
T KOG1789|consen 1360 ILYSRYSQELSPYKYAGYPMLIKTITLEAKDEALFSKGGGPLLSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRC 1439 (2235)
T ss_pred HHHHHhhhhcCccccCcchhhhhhhhhcccchhhhcCCCCcchHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCCccceeehhhhhhhhhhccChHHHHHHHhhcchHHHHHHhhccccchhHHHHHHHHHHHhhCCHHHHHH
Q 000065 1682 MCVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCTELELVPGAVDAALQTIAHVSVSSELQDA 1761 (2462)
Q Consensus 1682 ~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l~l~~~~~l~~aALe~v~~~a~~~elq~~ 1761 (2462)
|.|++++|.|++|+++||+|+||||+|++||++||+++.|+|+|++|||||+++...|+++.+|+|||+.|+++.+||.+
T Consensus 1440 v~Vvt~~s~p~dmav~vc~~v~~c~SVaaQFE~cR~~~~EmPSiI~Dl~r~l~f~~vPr~~~aa~qci~~~aVd~~LQ~~ 1519 (2235)
T KOG1789|consen 1440 VPVVTMSSLPDDMAVRVCIHVCDCFSVAAQFEACRQRLMEMPSIIGDLTRLLQFSNLPRLSTAAAQCIRAMAVDTLLQFQ 1519 (2235)
T ss_pred heeeccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccHHHHHHHhhcCCCcccccCccccccccccHHHHHHHHHHHHHHHHHHhhCcCCCCCCCCccHHHHHHHHHhchH
Q 000065 1762 LLKAGALWFLLPLLLQYDSTAEKSDTNESHGVGASVQIAKNMHAVRAAQALSRLSGLCSNGISIPYNEAAASALRALLTP 1841 (2462)
Q Consensus 1762 i~~~GVLw~LL~lLf~yD~Tlees~le~~~~~~~~~qivkn~lAk~a~~aL~~L~g~~~d~~~~P~~~~v~~~L~klLpP 1841 (2462)
++++|+|||||++||+||||+||++++++|+ +|+|+++|-||+.|+.||+||+|++.|+..+|.|+.++..|..+|||
T Consensus 1520 LfqAG~LWYlLp~Lf~YDyTlEESg~q~Se~--~n~Q~~aNslA~~s~~ALSRL~G~~AdE~~TP~N~T~~~sL~alLTP 1597 (2235)
T KOG1789|consen 1520 LFQAGVLWYLLPHLFHYDYTLEESGVQHSED--SNKQSLANSLARSSCEALSRLAGFRADEENTPDNDTVQASLRALLTP 1597 (2235)
T ss_pred HHHhhhHHHHHHHHhcccccccccCcccccc--chHHHHHHHHHHHHHHHHHHHhccccccccCCCChhHHHHHHHhccH
Confidence 9999999999999999999999999998873 47999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccChHHHHHHhhccCCCcccccchhhHHHHHHHHHHHHhccCCCCCcccccccccccccccCCcEEeeEEEee
Q 000065 1842 KLASLLKDQIPKNLLSKLNTNLESPEIIWNSSTRAELLKFVDQQRASQSPDGSYDLKDSNGFLYEALSKELYVGNVYLRV 1921 (2462)
Q Consensus 1842 ~l~~~L~d~~p~~~L~~L~Sn~EnPeLIWnn~tRaeL~~~L~~q~~~~~~~~~w~l~~~~~f~Y~~l~~EL~VGGVYLRl 1921 (2462)
++++.|++.....+|++||||.||||+||||+||+||++|++.|++.+.++|.+|...+.+|.|+.|++||+||+||||+
T Consensus 1598 yiAr~Lk~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirV 1677 (2235)
T KOG1789|consen 1598 YIARCLKLETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRV 1677 (2235)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhccceeeehhhccceeeeeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCChHHHHHHHHHHHHHHhhcccCCCCccccccccccccchhhhccccCCCCCCccccCCCCcccCcccccc
Q 000065 1922 YNDQPDFEITEPEAFCVALIDFISYLVHNQSATKSDVQGEESLDGLSSKIVQDKLSLDPSSSKTFELPSDATDSSMNERK 2001 (2462)
Q Consensus 1922 fneqP~w~Lr~Pk~Fl~~LLdfl~~~~~~~~~~~~d~~~~~~~~~~~~~~~qd~~~~~~~~~~~~ev~~~~~~~~~~~~~ 2001 (2462)
||+||+|.|..||.|+.+|+|||..+.+...+...|.+ +-.|+. |++.. +.++.
T Consensus 1678 YNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~-----------~s~d~i----------e~~~~-V~sE~---- 1731 (2235)
T KOG1789|consen 1678 YNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKA-----------ISDDLI----------EIDWG-VGSEA---- 1731 (2235)
T ss_pred ecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccc-----------cccchh----------hhhcc-cchhh----
Confidence 99999999999999999999999999988765321111 001111 11100 11111
Q ss_pred ccccccccccccccCcchHHHHHHHHHHHHHHHHHHhhCccchhcccccCChhhhhcccCC--CCCCCCChhhHHHHHHH
Q 000065 2002 VNDESLAVSDRKVTGKEDSVMIKNLQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSV--PFAPDSNIPQLCLNVLS 2079 (2462)
Q Consensus 2002 l~~~s~~~s~~~~~~~~d~e~l~~l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~--~~~~~~~vq~~aL~VL~ 2079 (2462)
.|... + --.+++|+|+||+||++.||+++..+.+...+.++|.|+.. ..+..+.+|++||+|++
T Consensus 1732 ---------HgD~l----P-s~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~ 1797 (2235)
T KOG1789|consen 1732 ---------HGDSL----P-TETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVIL 1797 (2235)
T ss_pred ---------hcCCC----C-hHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHH
Confidence 01110 0 11268999999999999999999999999999999998843 33456789999999999
Q ss_pred HhcCChhHHHHHHhhcchHHHHHHHHhhCcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHH
Q 000065 2080 LLTTCASCLEAMVADGSSLLLLLQMLHYAPACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAA 2159 (2462)
Q Consensus 2080 ~ls~n~~CVeaiA~~~~vl~~Ll~lL~~~p~~~~~~L~~L~aL~s~t~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~ 2159 (2462)
.+|+|++||+.|+.+. ++..|+.+||+.|++++.+|++||+|+|+++++|+|++|||++|+|++||++ +.+|+|++
T Consensus 1798 ~~Tan~~Cv~~~a~~~-vL~~LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~---~~~QqRAq 1873 (2235)
T KOG1789|consen 1798 LATANKECVTDLATCN-VLTTLLTLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLT---NSDQQRAQ 1873 (2235)
T ss_pred HHhcccHHHHHHHhhh-HHHHHHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhcc---CcHHHHHH
Confidence 9999999999999866 8999999999999999999999999999999999999999999999999986 47999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHH
Q 000065 2160 AASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQ 2239 (2462)
Q Consensus 2160 aA~lL~km~aD~lhGPrV~~~L~KfLP~~fvdamrdsp~~a~v~~fes~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q 2239 (2462)
+|++|+||.+||||||||+++|.||||.+|+|+|||+| ||+||+||+||||||||||+.||++++.+|.+|+.++|++|
T Consensus 1874 aAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~P-EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~Q 1952 (2235)
T KOG1789|consen 1874 AAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSP-EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQ 1952 (2235)
T ss_pred HHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCH-HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 78899999999999999999999999999999999999999
Q ss_pred hcCCcccccCCccccccccCCCCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHH
Q 000065 2240 MKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSA 2319 (2462)
Q Consensus 2240 ~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~ 2319 (2462)
++||.+.|++||++.+++|+.+|+.|||||+|.|+++|+|+|||||+||++|||+++++|++++++++ .++++|.
T Consensus 1953 Qk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh-----~l~lLt~ 2027 (2235)
T KOG1789|consen 1953 QKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQH-----ELDLLTK 2027 (2235)
T ss_pred ccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccc-----hhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988765 5689999
Q ss_pred HHHHHHhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCccccccccCCCCCCCCCCChhhHhhhhHHHHHH
Q 000065 2320 ALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLH 2399 (2462)
Q Consensus 2320 A~v~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vLh 2399 (2462)
|+|+|+++||+|+||||+|||+||++.+|+++|. .+++|||||||
T Consensus 2028 A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~-----------------------------------s~P~SaiRVlH 2072 (2235)
T KOG1789|consen 2028 AFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNT-----------------------------------SAPRSAIRVLH 2072 (2235)
T ss_pred HHHHHHHhCcchhhhCCCccchHHHHHHHHhcCC-----------------------------------cCcHHHHHHHH
Confidence 9999999999999999999999999999999863 24599999999
Q ss_pred HhhCChhHHHHhhhccCCCCcchHHHHHHhccCCcc-hhHHHHHHHHHhcCCccccHHHHhhcC
Q 000065 2400 QLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGS-ILALETLKRVVVAGNRARDALVAQGLK 2462 (2462)
Q Consensus 2400 ~Ls~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~-~~a~etl~r~~~~~~~~~~~lv~q~l~ 2462 (2462)
+||.|++|++|||+++||.| +|+.|+.+++. ++|||||||||++ ++|+||+||||
T Consensus 2073 ~Lsen~~C~~AMA~l~~i~~-----~m~~mkK~~~~~GLA~EalkR~~~r---~~~eLVAQ~LK 2128 (2235)
T KOG1789|consen 2073 ELSENQFCCDAMAQLPCIDG-----IMKSMKKQPSLMGLAAEALKRLMKR---NTGELVAQMLK 2128 (2235)
T ss_pred HHhhccHHHHHHhccccchh-----hHHHHHhcchHHHHHHHHHHHHHHH---hHHHHHHHHhc
Confidence 99999999999999999555 45555555444 4999999999995 69999999997
No 2
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-103 Score=962.84 Aligned_cols=922 Identities=19% Similarity=0.264 Sum_probs=741.2
Q ss_pred HHHHHHHhcccCCCccccCHHHHHHHHHHHHHHHhhhhHHhhhcccCCCCCCccccccCCCCCCccccccCcc-eeeccC
Q 000065 907 PEFWRAFSLDHNRADLVWNERTRQELREALQAEVHKLDVEKERTEDIVPGGATLETMTGQDSVPQISWNYPEF-SVSYPS 985 (2462)
Q Consensus 907 ~~f~~~~~~Dh~~p~lIWn~~tR~ELr~aL~~Ei~~f~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~WN~~eF-~V~Y~s 985 (2462)
+.|...|.+|+++|++|||++||+.|++.+.+|+.+|.+++.. +++..|+|.++ .|+||.
T Consensus 1167 ekFae~flgefDTPEiIW~~~MRr~lIe~ia~HLaDf~~rL~s-------------------n~raLYqYcPiP~i~YPe 1227 (2235)
T KOG1789|consen 1167 EKFAEVFLGEFDTPEIIWNTAMRRHLIERIAVHLADFSHRLTS-------------------NVRALYQYCPIPLIDYPE 1227 (2235)
T ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhccCHhHHH-------------------hHHHHHHcCCCCCCCcHH
Confidence 4688889999999999999999999999999999999998862 47899999999 899999
Q ss_pred cccceeeccchhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHhccccC---cccc----------CCC-CCcC-----
Q 000065 986 LSKEVCVGQYYLRLLLESGSSGRAQDFPLRDPVAFFRALYHRFLCDADIG---LTVD----------GAI-PDEL----- 1046 (2462)
Q Consensus 986 L~~Ev~vg~yYLRlLle~~~~~~~~~~~I~~p~~Ff~~ly~rfL~~~~~~---~~~~----------~~~-~~~l----- 1046 (2462)
|.+|++|+.||||+|||+.++ |+|||+||++|++.++..|..|.+++ ++++ |+. -|++
T Consensus 1228 L~~ElfCh~YYLr~LCD~~rF---PdWPI~dpV~fL~~~L~~W~~ElekKP~~mS~d~A~eiL~i~l~n~~hD~~~Kirr 1304 (2235)
T KOG1789|consen 1228 LAQELFCHVYYLRHLCDKQRF---PDWPIRDPVPFLRCCLATWYNELEKKPATMSVDLAREILSVDLTNEEHDKPAKIRR 1304 (2235)
T ss_pred HHHHHHHHHHHHHHHhccccC---CCCcccCchHHHHHHHHHHHHHHhcCCCccchHHHHHHhccccCCCCcccHHHHHH
Confidence 999999999999999999999 99999999999999999999999887 2221 111 2221
Q ss_pred -------CCCCccccCCC--------CcCC------CCCCCch-hH-HHHHHHHHHHHHhhhcccCCCCChhHHHHHHhh
Q 000065 1047 -------GASDDWCDMGR--------LDGF------GGGGGSS-VR-ELCARAMAIVYEQHYTTIGPFEGTAHITVLLDR 1103 (2462)
Q Consensus 1047 -------~~s~d~~~~~~--------~~~~------~~~~~~~-~r-~lcL~am~ivY~r~~~~ig~f~~~~y~~~Ll~~ 1103 (2462)
-++||+|+.|| +|+| ++.+|++ +| .|||||++|+|.||.+++.||||+||.+.+=..
T Consensus 1305 qY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~~ta~~~~GPdP~riiL~LKaQsILy~Ry~~~L~PyKYAGYPMLi~ti 1384 (2235)
T KOG1789|consen 1305 QYYKLAAKYHPDKNPEGREMFERVNKAYELLSSETANNSGGPDPHRIVLCLKAQSILYSRYSQELSPYKYAGYPMLIKTI 1384 (2235)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHhhcCCCCChhHhhHHHHhHHHHHHHhhhhcCccccCcchhhhhhh
Confidence 16779999998 2333 5777776 66 999999999999999999999999998755444
Q ss_pred cCCH-------HHHHHHHHHHHHH-----HhhhhcHHHHHHhCCchHHHHHHHhhhhcccCCccccccchhhcccccCCc
Q 000065 1104 TDDR-------ALRHRLLLLLKVL-----MKVLANIEACVLVGGCVLAVDLLTVVHETSERTAIPLQSNLLAATAFMEPF 1171 (2462)
Q Consensus 1104 t~d~-------~~R~~lll~~~~L-----~~~~~N~~~~v~~~G~~llvdLltlah~~~~~~~~~~q~n~i~a~~~~~~~ 1171 (2462)
|.|. -.+..|+-....| ..+.+|++++.+.||+++|++++.+|...+++++.|....++.++..+.
T Consensus 1385 T~e~~D~~lfSk~~~PLL~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~vc~~v~~-- 1462 (2235)
T KOG1789|consen 1385 TLEAKDEALFSKGGGPLLSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVRVCIHVCD-- 1462 (2235)
T ss_pred hhcccchhhhcCCCCcchHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCcchhhHHHHHHH--
Confidence 5433 2344555555544 5889999999999999999999999999999998888877776666651
Q ss_pred ceeEeecCCCcccccccHHHHHHHHhcCCcCcCCceecccCcchhhhhhhHHHHHHHhhcCCcCChhhHHHHHHHHHHHH
Q 000065 1172 KEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKLRDIRELRWALAVRVPVLTPTQVGEAALAILHNM 1251 (2462)
Q Consensus 1172 KEWyy~~~~g~~~GPvs~~eLk~l~~~g~I~~~T~~Wa~Gm~~W~~l~~ipqLrW~la~g~~vl~~~~l~~~~L~iL~~~ 1251 (2462)
| ++-+.|+.-+-+. ..|+...|-|+++.
T Consensus 1463 -----------------------------------c----------~SVaaQFE~cR~~------~~EmPSiI~Dl~r~- 1490 (2235)
T KOG1789|consen 1463 -----------------------------------C----------FSVAAQFEACRQR------LMEMPSIIGDLTRL- 1490 (2235)
T ss_pred -----------------------------------H----------HHHHHHHHHHHHH------HhhhhHHHHHHHHH-
Confidence 1 1122333222211 23555556666655
Q ss_pred hccccCCCCCCCccccCcchhhhccCCCchHHHHHhhhcCCchHHHHHHHHHHHHHhhChHHHHHHHhhhHHhhhhh---
Q 000065 1252 VSAHSDLDDAGEIVTPTPRVKWILSSSRCLPHIAQAMLSGEPSIVEAAAALLKAVVTRNPKAMIRLYSTGAFYFALA--- 1328 (2462)
Q Consensus 1252 ~~~~p~~d~~g~~i~P~Prvkr~Ls~~~~LphlvQlLLt~~p~lve~~~~LL~~l~~~n~~~~~~Ly~tG~f~f~L~--- 1328 (2462)
.+ |..-|.++..+++-+..+.. .+..+..||..|+.||+|.
T Consensus 1491 l~-----------------------------------f~~vPr~~~aa~qci~~~aV-d~~LQ~~LfqAG~LWYlLp~Lf 1534 (2235)
T KOG1789|consen 1491 LQ-----------------------------------FSNLPRLSTAAAQCIRAMAV-DTLLQFQLFQAGVLWYLLPHLF 1534 (2235)
T ss_pred HH-----------------------------------hccccHHHHHHHHHHHHHhh-hHHHHHHHHHhhhHHHHHHHHh
Confidence 22 55678889999999999877 6777999999999999996
Q ss_pred ---cC--CCChhhH----HHHhhhhhhhhc---------ccCCccccccCCchhhhhhhhcCCCcHHHHHHHHhcCHHHH
Q 000065 1329 ---YP--GSNLYSI----AQLFSVTHVHQA---------FHGGEEAAVSSSLPLAKRSVLGGLLPESLLYVLERSGPAAF 1390 (2462)
Q Consensus 1329 ---y~--gsn~~~i----a~lL~~~H~~Qa---------~~~~~~~~~~s~~~~~~rSvL~~lLPe~lv~~Le~~~p~~f 1390 (2462)
|+ .||+... .+-++..|.+|+ |..+|+. .+++.+.|.+|+.||+|.+...|........
T Consensus 1535 ~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE~~---TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~i 1611 (2235)
T KOG1789|consen 1535 HYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADEEN---TPDNDTVQASLRALLTPYIARCLKLETNDMV 1611 (2235)
T ss_pred cccccccccCccccccchHHHHHHHHHHHHHHHHHHHhcccccccc---CCCChhHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 44 2332211 233444555554 2345533 6889999999999999999999999999999
Q ss_pred HHHhccCCCCcccccchhhhhHHHHHHHHHHhcCCccccccccccccccCCCCCCcccchhhhhhhhHHHHHHhhhhccC
Q 000065 1391 SAAMVSDSDTPEIIWTHKMRAENLIRQVLQHLGDFPQKLSQHCHSLYEYAPMPPVTYPELKDEMWCHRYYLRNLCDEIQF 1470 (2462)
Q Consensus 1391 a~~l~~~~dtPevIWn~~MR~~~Li~~i~~hl~df~~rL~~~~~alY~~~p~p~i~Y~eL~~El~C~~yYLr~lcd~~rf 1470 (2462)
.+.|++|.++||+|||+.+|. +|++++.. +|-.+.+.+-|+-.-...|.|..++.|++.|..|+|.++|+
T Consensus 1612 Lk~LNsN~E~Py~IWNn~TRa-ELLeFve~------Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirVYNeq--- 1681 (2235)
T KOG1789|consen 1612 LKTLNSNMENPYMIWNNGTRA-ELLEFVER------QRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRVYNEQ--- 1681 (2235)
T ss_pred HHHhhcCCCCceeeecCccHH-HHHHHHHH------HHhccCCCCCchhhccceeeehhhccceeeeeEEEEeecCC---
Confidence 999999999999999999999 99999998 66666666777777788999999999999999999999999
Q ss_pred CCCChhhhHHHHHHHHHHHHHHhhcCCCCCchHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHH
Q 000065 1471 PNWPIVEHVEFLQSLLVMWREELTRRPMDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYR 1550 (2462)
Q Consensus 1471 P~wpi~dP~~fL~sll~~wr~e~~~~~~~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYR 1550 (2462)
|++.+.+|..|..++++......+. .+|-..+ ++.+.+.|.-+..
T Consensus 1682 Ptf~l~ePk~Fa~~LlDyI~S~~~~------------l~~~~~~-----------------------~~~s~d~ie~~~~ 1726 (2235)
T KOG1789|consen 1682 PTFALHEPKKFAIDLLDYIKSHSAE------------LTGAPKP-----------------------KAISDDLIEIDWG 1726 (2235)
T ss_pred CchhhcCcHHHHHHHHHHHHHhHHH------------hcCCCCc-----------------------cccccchhhhhcc
Confidence 9999999999999999998774322 1221111 1112222222111
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHHHHHhhccccCCCCCChhhHHhhhhhccccccccCCcCCCCccCccccccccccccC
Q 000065 1551 KLAMKYHPDKNPEGREKFLAVQKAYERLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDVLEPFKYAGYPMLLNAVTVDE 1630 (2462)
Q Consensus 1551 kLa~k~HPDKnp~a~ekF~~I~~AYEvLsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l~py~y~Gy~~Ll~~i~~e~ 1630 (2462)
.+-.-|-|+.|..+ .++-+.+.|.+ .++.++
T Consensus 1727 -V~sE~HgD~lPs~~----~v~m~LtAL~N--------------------------------------------li~~nP 1757 (2235)
T KOG1789|consen 1727 -VGSEAHGDSLPTET----KVLMTLTALAN--------------------------------------------LVSANP 1757 (2235)
T ss_pred -cchhhhcCCCChHH----HHHHHHHHHHH--------------------------------------------HHhhCc
Confidence 22256888877533 45555555554 222234
Q ss_pred CCCCCCccCchhHHHHHHHHHhhhcccCCCchhhHHHhcCHHHHHHHHHHhhhcccCCCCCCCccceeehhhhhhhhhhc
Q 000065 1631 DDNNFLSSDRAPLLVAASELLWLTCASSSLNGEELVRDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLS 1710 (2462)
Q Consensus 1631 ~d~~ffs~~~~~ll~~A~El~~~Tv~~S~lNaeeL~re~G~~~L~~~l~rC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a 1710 (2462)
|-.+.|+++. +|+... .||.
T Consensus 1758 dlasvfgSe~---------------------------------------~lig~F------------------~l~~--- 1777 (2235)
T KOG1789|consen 1758 DLASVFGSEI---------------------------------------LLIGNF------------------PLLI--- 1777 (2235)
T ss_pred chhhhccchh---------------------------------------hhhccc------------------HHHH---
Confidence 4456666532 343321 0111
Q ss_pred cChHHHHHHHhhcchHHHHHHhhccccchhHHHHHHHHHHHhhCCHHHHHHHHHhccHHHHHHHhhcCCCcccccCcccc
Q 000065 1711 QFESARTEVLQFSGLVQDIVHCTELELVPGAVDAALQTIAHVSVSSELQDALLKAGALWFLLPLLLQYDSTAEKSDTNES 1790 (2462)
Q Consensus 1711 ~F~~cr~~i~~~~~l~~di~~~l~l~~~~~l~~aALe~v~~~a~~~elq~~i~~~GVLw~LL~lLf~yD~Tlees~le~~ 1790 (2462)
-.+.-+..|+++..||++|+.+++|.+|++.|+.+|+|..||.+|.+-. +.-+.+++++
T Consensus 1778 --------------------~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~P-S~R~~vL~vL 1836 (2235)
T KOG1789|consen 1778 --------------------TYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQP-SMRARVLDVL 1836 (2235)
T ss_pred --------------------HHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcCh-HHHHHHHHHH
Confidence 1122256788999999999999999999999999999999999987622 2335788999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHh-----------------hCcCCCCCCCCccHHHHHHHHHhchHHHHHHhhccChH
Q 000065 1791 HGVGASVQIAKNMHAVRAAQALSRL-----------------SGLCSNGISIPYNEAAASALRALLTPKLASLLKDQIPK 1853 (2462)
Q Consensus 1791 ~~~~~~~qivkn~lAk~a~~aL~~L-----------------~g~~~d~~~~P~~~~v~~~L~klLpP~l~~~L~d~~p~ 1853 (2462)
++++++.|+.|++++++++.++.++ +|+..|++.||+ |+++|-||||..|++.|+|+ |+
T Consensus 1837 YAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPr---V~ITL~kFLP~~f~d~~RD~-PE 1912 (2235)
T KOG1789|consen 1837 YALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPR---VTITLIKFLPEIFADSLRDS-PE 1912 (2235)
T ss_pred HHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCc---eeeehHHhchHHHHHHHhcC-HH
Confidence 9999999999999999999888843 478899999997 59999999999999999997 89
Q ss_pred HHHHHhhccCCCcccccchhhHHHHHHHHHHH------HhccCCCCCcccccccccccccccCCcEEeeEEEeeeccCCC
Q 000065 1854 NLLSKLNTNLESPEIIWNSSTRAELLKFVDQQ------RASQSPDGSYDLKDSNGFLYEALSKELYVGNVYLRVYNDQPD 1927 (2462)
Q Consensus 1854 ~~L~~L~Sn~EnPeLIWnn~tRaeL~~~L~~q------~~~~~~~~~w~l~~~~~f~Y~~l~~EL~VGGVYLRlfneqP~ 1927 (2462)
+++++|+++|||||||||+.||+.++..+.++ .|+++|+.+|+.|+.+.. ++...||+.|||||+|.|+.+|+
T Consensus 1913 AaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg-~~Ea~~E~aVGG~~~R~Fi~~P~ 1991 (2235)
T KOG1789|consen 1913 AAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAG-TSEADKECAVGGSINREFVVGPG 1991 (2235)
T ss_pred HHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcc-hhhhccCcccchhhhHHHhhCCC
Confidence 99999999999999999999999999888775 367899999999998766 78999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcccCCCCccccccccccccchhhhccccCCCCCCccccCCCCcccCcccccccccccc
Q 000065 1928 FEITEPEAFCVALIDFISYLVHNQSATKSDVQGEESLDGLSSKIVQDKLSLDPSSSKTFELPSDATDSSMNERKVNDESL 2007 (2462)
Q Consensus 1928 w~Lr~Pk~Fl~~LLdfl~~~~~~~~~~~~d~~~~~~~~~~~~~~~qd~~~~~~~~~~~~ev~~~~~~~~~~~~~l~~~s~ 2007 (2462)
|+||+||+|+.+|||.+.+++++.++.
T Consensus 1992 f~LR~Pk~FL~~LLek~lelm~~~~pe----------------------------------------------------- 2018 (2235)
T KOG1789|consen 1992 FNLRHPKLFLTELLEKVLELMSRPTPE----------------------------------------------------- 2018 (2235)
T ss_pred CcccCHHHHHHHHHHHHHHHhcCCCcc-----------------------------------------------------
Confidence 999999999999999999998765431
Q ss_pred ccccccccCcchHHHHHHHHHHHHHHHHHHhhCccchhcccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhH
Q 000065 2008 AVSDRKVTGKEDSVMIKNLQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASC 2087 (2462)
Q Consensus 2008 ~~s~~~~~~~~d~e~l~~l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~C 2087 (2462)
.+. +.....|+++|++.+|++++|++++|+++|++..+..+ ++.++.+|++|||.|+.|+-|
T Consensus 2019 ------------qh~---l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~---n~s~P~SaiRVlH~Lsen~~C 2080 (2235)
T KOG1789|consen 2019 ------------QHE---LDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQ---NTSAPRSAIRVLHELSENQFC 2080 (2235)
T ss_pred ------------cch---hHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhc---CCcCcHHHHHHHHHHhhccHH
Confidence 112 23346689999999999999999999999999999887 467999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHhhCcchHHHHHHHHHHhh--cchHHHHHHHHcCCHhhhHHhhcCCC---CCCcHHHHHHHHH
Q 000065 2088 LEAMVADGSSLLLLLQMLHYAPACREGVLHVLYALA--STPELAWAAAKHGGVVYILELLLPSQ---QETPLQQRAAAAS 2162 (2462)
Q Consensus 2088 VeaiA~~~~vl~~Ll~lL~~~p~~~~~~L~~L~aL~--s~t~lvkqal~~GgvlyLL~LL~~~~---e~~~~~~R~~aA~ 2162 (2462)
+++||+.+ ++..++..|...++..++++++|.+++ ..+++|+|++++|.|.|||.+|+++. -....+.|+++++
T Consensus 2081 ~~AMA~l~-~i~~~m~~mkK~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~tL~~~~~~aas~A~Iv~ 2159 (2235)
T KOG1789|consen 2081 CDAMAQLP-CIDGIMKSMKKQPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSSTLNGVSNGAAARAEIVD 2159 (2235)
T ss_pred HHHHhccc-cchhhHHHHHhcchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccccccccCchhHHHHHHHH
Confidence 99999977 556789999999999999999999888 47799999999999999999998863 1346789999999
Q ss_pred HHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCch
Q 000065 2163 LLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPG 2198 (2462)
Q Consensus 2163 lL~km~aD~lhGPrV~~~L~KfLP~~fvdamrdsp~ 2198 (2462)
+|+.|..+..+|.||+++|++ ...++|.+|+.-
T Consensus 2160 aLk~~~~~l~vg~kV~EILd~---S~VWSAfKDQKH 2192 (2235)
T KOG1789|consen 2160 ALKSAILDLKVGQKVAEILDK---SPVWSAFKDQKH 2192 (2235)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---hhHHHHhhhccc
Confidence 999999999999999999999 999999999864
No 3
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1e-15 Score=186.73 Aligned_cols=69 Identities=41% Similarity=0.699 Sum_probs=63.1
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC---chHHHHHHHHHHHHHh
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERL 1578 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEvL 1578 (2462)
..++|+||||+ ++|+++||||||||||+|||||+|| +|+|||++|++|||||
T Consensus 3 ~~dyYeiLGV~-------------------------k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVL 57 (371)
T COG0484 3 KRDYYEILGVS-------------------------KDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVL 57 (371)
T ss_pred ccchhhhcCCC-------------------------CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 45789999999 5899999999999999999999998 4899999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhccccccccCCcCC
Q 000065 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDVLE 1612 (2462)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l~ 1612 (2462)
||++ +|..||+||+...
T Consensus 58 sD~e-----------------KRa~YD~fG~~~~ 74 (371)
T COG0484 58 SDPE-----------------KRAAYDQFGHAGF 74 (371)
T ss_pred CCHH-----------------HHHHhhccCcccc
Confidence 9976 7899999998654
No 4
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.1e-15 Score=181.64 Aligned_cols=109 Identities=28% Similarity=0.466 Sum_probs=91.3
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc----hHHHHHHHHHHHHH
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYER 1577 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEv 1577 (2462)
...+|++|||. +++++.+||++|||||++|||||||+ +.++|+.|+.||||
T Consensus 7 ~~c~YE~L~v~-------------------------~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeV 61 (508)
T KOG0717|consen 7 KRCYYEVLGVE-------------------------RDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEV 61 (508)
T ss_pred hhHHHHHhccc-------------------------ccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 35689999999 58899999999999999999999984 78899999999999
Q ss_pred hhccccCCCCCChhhHHhhhhhccccccccCC---cCC----CCccCccccccccccccCCCCCCCccCchhHHHHHHH
Q 000065 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGD---VLE----PFKYAGYPMLLNAVTVDEDDNNFLSSDRAPLLVAASE 1649 (2462)
Q Consensus 1578 Lsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~---~l~----py~y~Gy~~Ll~~i~~e~~d~~ffs~~~~~ll~~A~E 1649 (2462)
||||++|.||+.+ .+.||+.+-. .+|. ++. +.+|.|| +.+..|||.+|..+|...|.+
T Consensus 62 LSdp~eR~wyd~h--reqil~~~~s---~~~~~~~dlf~ff~~~~y~gy---------~~~~~gfy~vy~dvf~~~~~~ 126 (508)
T KOG0717|consen 62 LSDPQERAWYDSH--REQILRGKNS---DTGVQIEDLFQFFTSSCYIGY---------ENTSAGFYRVYQDVFNALASD 126 (508)
T ss_pred hcChHhhhhHHHH--HHHHhcCCCC---ccccchHHHHHHhhhhhhccc---------ccccchhHHHHHHHHHHHhhh
Confidence 9999999999984 5567776543 4443 333 4489999 577899999999999877765
No 5
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.1e-14 Score=169.70 Aligned_cols=71 Identities=37% Similarity=0.664 Sum_probs=63.5
Q ss_pred chHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHHHHH
Q 000065 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYER 1577 (2462)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEv 1577 (2462)
+..+.|++|||+ ++|+++|||+||||||+||||||||+ |.++|+.|+.||||
T Consensus 14 ~~rDfYelLgV~-------------------------k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEV 68 (336)
T KOG0713|consen 14 AGRDFYELLGVP-------------------------KNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEV 68 (336)
T ss_pred cCCCHHHHhCCC-------------------------CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 457899999999 48999999999999999999999975 89999999999999
Q ss_pred hhccccCCCCCChhhHHhhhhhccccccccCCcCCC
Q 000065 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDVLEP 1613 (2462)
Q Consensus 1578 Lsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l~p 1613 (2462)
||||. +|..||+||+....
T Consensus 69 LsDpe-----------------kRk~YD~~GEegL~ 87 (336)
T KOG0713|consen 69 LSDPE-----------------KRKHYDTYGEEGLK 87 (336)
T ss_pred hcCHH-----------------HHHHHHhhhHhhhc
Confidence 99975 67889999976543
No 6
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.5e-13 Score=165.92 Aligned_cols=66 Identities=44% Similarity=0.755 Sum_probs=61.2
Q ss_pred HHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhhcccc
Q 000065 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQATMQ 1583 (2462)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLsd~~~ 1583 (2462)
..|++|||++ +|+++||||||||||++|||||||++.|||++|++|||+||||+
T Consensus 5 ~~y~il~v~~-------------------------~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~e- 58 (337)
T KOG0712|consen 5 KLYDILGVSP-------------------------DASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPE- 58 (337)
T ss_pred ccceeeccCC-------------------------CcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 4689999995 78999999999999999999999999999999999999999976
Q ss_pred CCCCCChhhHHhhhhhccccccccCCcC
Q 000065 1584 GLQGPQPWRLLLLLKGQCILYRRYGDVL 1611 (2462)
Q Consensus 1584 r~~~p~~~~~~liLr~qr~~Ydr~g~~l 1611 (2462)
+|.+||+||+..
T Consensus 59 ----------------kr~~yD~~g~~~ 70 (337)
T KOG0712|consen 59 ----------------KREIYDQYGEEG 70 (337)
T ss_pred ----------------HHHHHHhhhhhh
Confidence 789999999753
No 7
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=2.1e-12 Score=161.66 Aligned_cols=66 Identities=42% Similarity=0.724 Sum_probs=60.2
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC---chHHHHHHHHHHHHHhh
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEvLs 1579 (2462)
.++|+||||++ +||+++|||||||||++||||||+ +++++|++|++|||+|+
T Consensus 3 ~dyY~vLgv~~-------------------------~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLs 57 (369)
T PRK14288 3 LSYYEILEVEK-------------------------HSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLS 57 (369)
T ss_pred CChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhc
Confidence 47899999994 899999999999999999999997 37899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
|+. +|..||+||+.
T Consensus 58 d~~-----------------kR~~YD~~G~~ 71 (369)
T PRK14288 58 DEK-----------------KRALYDRYGKK 71 (369)
T ss_pred cHH-----------------HHHHHHHhccc
Confidence 965 78899999975
No 8
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=2.1e-12 Score=161.71 Aligned_cols=68 Identities=26% Similarity=0.545 Sum_probs=61.1
Q ss_pred chHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHHh
Q 000065 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERL 1578 (2462)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvL 1578 (2462)
+..++|++|||++ +|++++|||||||||++||||+|+ +++++|++|++|||+|
T Consensus 2 ~~~dyY~~Lgv~~-------------------------~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevL 56 (372)
T PRK14296 2 KKKDYYEVLGVSK-------------------------TASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVL 56 (372)
T ss_pred CCCCHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHh
Confidence 3458999999994 789999999999999999999996 4889999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
+|++ +|..||+||+.
T Consensus 57 sD~~-----------------KR~~YD~~G~~ 71 (372)
T PRK14296 57 LDKD-----------------KRKQYDQFGHA 71 (372)
T ss_pred cCHH-----------------Hhhhhhhccch
Confidence 9965 78899999975
No 9
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.25 E-value=4.8e-12 Score=160.14 Aligned_cols=68 Identities=35% Similarity=0.645 Sum_probs=61.5
Q ss_pred CchHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhh
Q 000065 1500 LSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1500 ~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLs 1579 (2462)
+...++|++|||++ +|+.++|||||||||++||||||++ .++|++|++|||+|+
T Consensus 25 ~~~~d~Y~vLGV~~-------------------------~As~~eIKkAYrkla~k~HPDk~~~-~e~F~~i~~AYevLs 78 (421)
T PTZ00037 25 VDNEKLYEVLNLSK-------------------------DCTTSEIKKAYRKLAIKHHPDKGGD-PEKFKEISRAYEVLS 78 (421)
T ss_pred ccchhHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCch-HHHHHHHHHHHHHhc
Confidence 45679999999994 8899999999999999999999985 689999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
|+. +|..||+||+.
T Consensus 79 D~~-----------------kR~~YD~~G~~ 92 (421)
T PTZ00037 79 DPE-----------------KRKIYDEYGEE 92 (421)
T ss_pred cHH-----------------HHHHHhhhcch
Confidence 975 78899999875
No 10
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=8.3e-12 Score=156.50 Aligned_cols=68 Identities=43% Similarity=0.689 Sum_probs=61.0
Q ss_pred chHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC---chHHHHHHHHHHHHH
Q 000065 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYER 1577 (2462)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEv 1577 (2462)
+..++|++|||++ +|+.++||+|||+||++||||||+ +++++|++|++|||+
T Consensus 2 ~~~d~y~~Lgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~v 56 (372)
T PRK14286 2 SERSYYDILGVSK-------------------------SANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEI 56 (372)
T ss_pred CCCCHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHH
Confidence 3468999999994 889999999999999999999986 378999999999999
Q ss_pred hhccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1578 Lsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
|+|+. +|..||+||+.
T Consensus 57 L~d~~-----------------kR~~YD~~G~~ 72 (372)
T PRK14286 57 LRDPK-----------------KRQAYDQFGKA 72 (372)
T ss_pred hccHH-----------------HHHHHHHhCch
Confidence 99965 78899999975
No 11
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=1.3e-11 Score=155.65 Aligned_cols=66 Identities=35% Similarity=0.507 Sum_probs=59.9
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC---chHHHHHHHHHHHHHh
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERL 1578 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEvL 1578 (2462)
..++|++|||++ +|++++|||||||||++||||||+ ++.++|++|++|||+|
T Consensus 8 ~~Dyy~~Lgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL 62 (392)
T PRK14279 8 EKDFYKELGVSS-------------------------DASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVL 62 (392)
T ss_pred ccCHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHh
Confidence 358999999994 789999999999999999999997 3789999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhccccccccCC
Q 000065 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGD 1609 (2462)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~ 1609 (2462)
+|++ +|..||+||+
T Consensus 63 sD~~-----------------KR~~YD~~G~ 76 (392)
T PRK14279 63 SDPA-----------------KRKEYDETRR 76 (392)
T ss_pred cchh-----------------hhhHHHHhhh
Confidence 9975 7888999986
No 12
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=1.2e-11 Score=154.92 Aligned_cols=67 Identities=33% Similarity=0.637 Sum_probs=60.6
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHHhh
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2462)
..++|++|||++ +|+.++|||||||||++||||+|+ +++++|++|++|||+|+
T Consensus 3 ~~d~y~~Lgv~~-------------------------~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~ 57 (371)
T PRK14287 3 KRDYYEVLGVDR-------------------------NASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLS 57 (371)
T ss_pred CCCHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhC
Confidence 357999999994 889999999999999999999995 47899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
|+. +|..||+||+.
T Consensus 58 d~~-----------------kR~~YD~~G~~ 71 (371)
T PRK14287 58 DPQ-----------------KKAHYDQFGHT 71 (371)
T ss_pred cHh-----------------HHHHHHhhCCc
Confidence 975 78899999975
No 13
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=2.3e-11 Score=153.08 Aligned_cols=67 Identities=37% Similarity=0.629 Sum_probs=60.7
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHHhh
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2462)
..++|++|||++ +|+.++||+||||||++||||+|+ +++++|+.|++|||+|+
T Consensus 3 ~~d~y~~Lgv~~-------------------------~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~ 57 (380)
T PRK14276 3 NTEYYDRLGVSK-------------------------DASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLS 57 (380)
T ss_pred CCCHHHhhCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhc
Confidence 358999999994 889999999999999999999996 47899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
|+. +|..||+||+.
T Consensus 58 d~~-----------------kR~~YD~~G~~ 71 (380)
T PRK14276 58 DPQ-----------------KRAAYDQYGAA 71 (380)
T ss_pred CHh-----------------hhhhHhhcCCc
Confidence 965 78899999975
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=2.4e-11 Score=152.36 Aligned_cols=67 Identities=37% Similarity=0.730 Sum_probs=60.1
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc----hHHHHHHHHHHHHH
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYER 1577 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEv 1577 (2462)
..++|++|||++ +|+.++||+|||+||++||||+|++ ++++|++|++|||+
T Consensus 3 ~~d~y~~lgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~v 57 (369)
T PRK14282 3 KKDYYEILGVSR-------------------------NATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEV 57 (369)
T ss_pred CCChHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHH
Confidence 457999999994 8899999999999999999999873 67899999999999
Q ss_pred hhccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1578 Lsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
|+|+. +|..||+||..
T Consensus 58 L~d~~-----------------kR~~YD~~g~~ 73 (369)
T PRK14282 58 LSDPQ-----------------KRAMYDRFGYV 73 (369)
T ss_pred hcChh-----------------hHHHHhhcCcc
Confidence 99965 78899999864
No 15
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=3.4e-11 Score=151.27 Aligned_cols=66 Identities=33% Similarity=0.624 Sum_probs=60.3
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHHhhc
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQA 1580 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLsd 1580 (2462)
.++|++|||++ +|+.++||+||||||++||||+|+ +++++|++|++|||+|+|
T Consensus 4 ~~~y~iLgv~~-------------------------~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d 58 (376)
T PRK14280 4 RDYYEVLGVSK-------------------------SASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSD 58 (376)
T ss_pred CChHHhhCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhcc
Confidence 57999999994 789999999999999999999986 478999999999999999
Q ss_pred cccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
+. +|..||+||+.
T Consensus 59 ~~-----------------kr~~yD~~G~~ 71 (376)
T PRK14280 59 DQ-----------------KRAQYDQFGHA 71 (376)
T ss_pred Hh-----------------HHHHHHhcCcc
Confidence 65 78899999975
No 16
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=3.2e-11 Score=151.68 Aligned_cols=67 Identities=33% Similarity=0.605 Sum_probs=60.5
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHHhh
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2462)
..++|++|||++ +|+.+|||||||+||++||||||+ +++++|++|++|||+|+
T Consensus 4 ~~d~y~~Lgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Ls 58 (378)
T PRK14283 4 KRDYYEVLGVDR-------------------------NADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLS 58 (378)
T ss_pred cCChHHhhCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhc
Confidence 458999999994 889999999999999999999996 58899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
|+. +|..||+||+.
T Consensus 59 d~~-----------------kR~~YD~~G~~ 72 (378)
T PRK14283 59 DDE-----------------KRQRYDQFGHA 72 (378)
T ss_pred hhH-----------------HHHHHhhhccc
Confidence 965 68889999864
No 17
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=3.5e-11 Score=146.53 Aligned_cols=67 Identities=33% Similarity=0.593 Sum_probs=60.6
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHHhh
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2462)
..++|++|||++ +||.++|||||||||++||||+|+ +++++|+.|++||++|+
T Consensus 3 ~~d~y~vLgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~ 57 (291)
T PRK14299 3 YKDYYAILGVPK-------------------------NASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLS 57 (291)
T ss_pred CCCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhc
Confidence 458999999994 889999999999999999999996 47899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
|+. +|..||+||+.
T Consensus 58 d~~-----------------kr~~yD~~g~~ 71 (291)
T PRK14299 58 DPE-----------------KRRIYDTYGTT 71 (291)
T ss_pred CHH-----------------HHHHHHhcCCc
Confidence 965 78899999975
No 18
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=3.6e-11 Score=150.97 Aligned_cols=66 Identities=41% Similarity=0.698 Sum_probs=60.0
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHHhhc
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQA 1580 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLsd 1580 (2462)
.++|++|||++ +|+.++||+||||||++||||+|+ +++++|++|++|||+|+|
T Consensus 5 ~d~y~iLgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d 59 (377)
T PRK14298 5 RDYYEILGLSK-------------------------DASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSD 59 (377)
T ss_pred CCHHHhhCCCC-------------------------CCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcc
Confidence 57999999994 889999999999999999999996 478999999999999999
Q ss_pred cccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
+. +|..||+||+.
T Consensus 60 ~~-----------------kR~~YD~~G~~ 72 (377)
T PRK14298 60 AE-----------------KRAQYDRFGHA 72 (377)
T ss_pred hH-----------------hhhhhhhcCcc
Confidence 75 78899999975
No 19
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=4.5e-11 Score=150.52 Aligned_cols=66 Identities=33% Similarity=0.675 Sum_probs=59.8
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC---chHHHHHHHHHHHHHhh
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEvLs 1579 (2462)
.++|++|||++ +|++++||+|||+||++||||+|+ +++++|++|++|||+|+
T Consensus 4 ~d~y~~Lgv~~-------------------------~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~ 58 (380)
T PRK14297 4 KDYYEVLGLEK-------------------------GASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLS 58 (380)
T ss_pred CChHHhhCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 57999999994 889999999999999999999997 37899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
|+. +|..||+||+.
T Consensus 59 d~~-----------------~r~~yD~~G~~ 72 (380)
T PRK14297 59 DPQ-----------------KKAQYDQFGTA 72 (380)
T ss_pred CHh-----------------hhCchhhcCcc
Confidence 975 68899999875
No 20
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=4.7e-11 Score=149.50 Aligned_cols=66 Identities=35% Similarity=0.614 Sum_probs=59.7
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHHHHHhh
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvLs 1579 (2462)
.++|++|||++ +|+.++||+|||+||++||||||++ ++++|++|++|||+|+
T Consensus 3 ~d~y~iLgv~~-------------------------~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~ 57 (365)
T PRK14285 3 RDYYEILGLSK-------------------------GASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLI 57 (365)
T ss_pred CCHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 47899999994 8899999999999999999999973 6789999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
|+. +|..||+||+.
T Consensus 58 d~~-----------------kr~~yd~~g~~ 71 (365)
T PRK14285 58 DDN-----------------KRAQYDRFGHT 71 (365)
T ss_pred Ccc-----------------hhHHHHhcCcc
Confidence 965 68889999975
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=4.1e-11 Score=150.20 Aligned_cols=68 Identities=40% Similarity=0.696 Sum_probs=61.0
Q ss_pred chHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHHHHH
Q 000065 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYER 1577 (2462)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEv 1577 (2462)
...++|++|||++ +|+.++||+||||||++||||+|++ ++++|++|++|||+
T Consensus 2 ~~~d~y~~lgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~v 56 (366)
T PRK14294 2 VKRDYYEILGVTR-------------------------DASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEV 56 (366)
T ss_pred CCCChHHHhCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHH
Confidence 3468999999994 7899999999999999999999973 78999999999999
Q ss_pred hhccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1578 Lsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
|+|+. +|..||+||+.
T Consensus 57 L~d~~-----------------~r~~yD~~G~~ 72 (366)
T PRK14294 57 LSDPK-----------------KRGIYDQYGHE 72 (366)
T ss_pred hccHH-----------------HHHHHHhhccc
Confidence 99965 78899999975
No 22
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=4.7e-11 Score=149.87 Aligned_cols=67 Identities=36% Similarity=0.736 Sum_probs=60.2
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHHHHHh
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERL 1578 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvL 1578 (2462)
..++|++|||++ +||.++||+|||+||++||||||++ ++++|++|++|||+|
T Consensus 3 ~~~~y~~Lgv~~-------------------------~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL 57 (373)
T PRK14301 3 QRDYYEVLGVSR-------------------------DASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVL 57 (373)
T ss_pred CCChHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHh
Confidence 468999999994 7899999999999999999999973 678999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
+|+. +|..||+||+.
T Consensus 58 ~d~~-----------------kr~~yD~~g~~ 72 (373)
T PRK14301 58 RDAE-----------------KRARYDRFGHA 72 (373)
T ss_pred cchh-----------------hhhhhhhcccc
Confidence 9975 78899999975
No 23
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=5.1e-11 Score=150.18 Aligned_cols=66 Identities=38% Similarity=0.693 Sum_probs=59.8
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHHHHHhh
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvLs 1579 (2462)
.++|++|||++ +|++++||+||||||++||||||++ ++++|++|++|||+|+
T Consensus 5 ~d~y~~Lgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~ 59 (386)
T PRK14277 5 KDYYEILGVDR-------------------------NATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILS 59 (386)
T ss_pred CCHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhC
Confidence 57999999994 8899999999999999999999973 6889999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
|+. +|..||+||+.
T Consensus 60 d~~-----------------kr~~yD~~G~~ 73 (386)
T PRK14277 60 DPQ-----------------KRAQYDQFGHA 73 (386)
T ss_pred CHH-----------------HHHHHHhhccc
Confidence 965 68899999964
No 24
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=6.8e-11 Score=137.60 Aligned_cols=67 Identities=33% Similarity=0.664 Sum_probs=60.3
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHHHHHh
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERL 1578 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvL 1578 (2462)
..+.|++||+.+ +++.++|||+||+|+++|||||+++ +.+||+.||+||++|
T Consensus 30 ~~~LYdVLgl~k-------------------------~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~IL 84 (279)
T KOG0716|consen 30 RLDLYDVLGLPK-------------------------TATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAIL 84 (279)
T ss_pred hhHHHHHhCCCc-------------------------ccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHh
Confidence 456899999994 7899999999999999999999865 899999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
+|+. +|..||+||+.
T Consensus 85 sD~~-----------------kR~~YD~~g~~ 99 (279)
T KOG0716|consen 85 SDPT-----------------KRNVYDEYGEL 99 (279)
T ss_pred cChh-----------------hhhhHHHhhhH
Confidence 9964 78999999864
No 25
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=5.1e-11 Score=149.81 Aligned_cols=66 Identities=36% Similarity=0.553 Sum_probs=59.8
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc--hHHHHHHHHHHHHHhhc
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQA 1580 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~--a~ekF~~I~~AYEvLsd 1580 (2462)
.++|++|||++ +|+.++||+|||+||++||||+|++ ++++|++|++|||+|+|
T Consensus 3 ~d~y~iLgv~~-------------------------~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d 57 (378)
T PRK14278 3 RDYYGLLGVSR-------------------------NASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSD 57 (378)
T ss_pred CCcceecCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhch
Confidence 46899999994 8899999999999999999999976 77899999999999999
Q ss_pred cccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
+. +|..||+||+.
T Consensus 58 ~~-----------------~r~~YD~~G~~ 70 (378)
T PRK14278 58 PE-----------------KRRIVDLGGDP 70 (378)
T ss_pred hh-----------------hhhhhhccCCc
Confidence 65 68889999975
No 26
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=8.7e-11 Score=148.38 Aligned_cols=65 Identities=43% Similarity=0.712 Sum_probs=59.2
Q ss_pred HHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHHHHHhhc
Q 000065 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQA 1580 (2462)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvLsd 1580 (2462)
++|+||||++ +|+.++||||||+||++||||+|++ ++++|++|++||++|+|
T Consensus 2 d~y~iLgv~~-------------------------~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d 56 (391)
T PRK14284 2 DYYTILGVSK-------------------------TASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSD 56 (391)
T ss_pred CHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcC
Confidence 5899999994 8899999999999999999999974 78899999999999999
Q ss_pred cccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
+. +|..||+||+.
T Consensus 57 ~~-----------------kR~~YD~~G~~ 69 (391)
T PRK14284 57 AQ-----------------KRESYDRYGKD 69 (391)
T ss_pred HH-----------------HHHHHHhcccc
Confidence 65 78899999975
No 27
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.07 E-value=9.9e-11 Score=147.47 Aligned_cols=66 Identities=39% Similarity=0.684 Sum_probs=59.7
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHHhhc
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQA 1580 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLsd 1580 (2462)
.++|++|||++ +|+.++||+|||+||++||||+|+ +++++|++|++|||+|+|
T Consensus 3 ~d~Y~~Lgv~~-------------------------~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd 57 (382)
T PRK14291 3 KDYYEILGVSR-------------------------NATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSD 57 (382)
T ss_pred CCHHHhhCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcC
Confidence 47899999994 889999999999999999999996 478999999999999999
Q ss_pred cccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
+. +|..||+||+.
T Consensus 58 ~~-----------------kR~~YD~~g~~ 70 (382)
T PRK14291 58 PE-----------------KRKLYDQFGHA 70 (382)
T ss_pred HH-----------------HHHHHhhhccc
Confidence 65 68899999875
No 28
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.07 E-value=1e-10 Score=147.05 Aligned_cols=67 Identities=42% Similarity=0.772 Sum_probs=60.0
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHHHHHh
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERL 1578 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvL 1578 (2462)
..++|++|||++ +|+.++||+||||||++||||||++ ++++|++|++|||+|
T Consensus 3 ~~d~y~iLgv~~-------------------------~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L 57 (371)
T PRK10767 3 KRDYYEVLGVSR-------------------------NASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVL 57 (371)
T ss_pred CCChHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHh
Confidence 458999999994 7899999999999999999999963 678999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
+|+. +|..||+||+.
T Consensus 58 ~d~~-----------------~r~~yd~~g~~ 72 (371)
T PRK10767 58 SDPQ-----------------KRAAYDQYGHA 72 (371)
T ss_pred cchh-----------------hhhHhhhcccc
Confidence 9965 67889999864
No 29
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.5e-10 Score=141.53 Aligned_cols=70 Identities=34% Similarity=0.649 Sum_probs=62.4
Q ss_pred CchHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc------hHHHHHHHHH
Q 000065 1500 LSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE------GREKFLAVQK 1573 (2462)
Q Consensus 1500 ~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~------a~ekF~~I~~ 1573 (2462)
..+.|.|.+|++++ +|++++||+||||+++.|||||.-+ |+++|+.|++
T Consensus 6 ~~e~e~Ya~LNlpk-------------------------dAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~ 60 (546)
T KOG0718|consen 6 LDEIELYALLNLPK-------------------------DATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQR 60 (546)
T ss_pred cchhhHHHHhCCCc-------------------------ccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHH
Confidence 34568999999994 8899999999999999999999742 8899999999
Q ss_pred HHHHhhccccCCCCCChhhHHhhhhhccccccccCCcC
Q 000065 1574 AYERLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDVL 1611 (2462)
Q Consensus 1574 AYEvLsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l 1611 (2462)
|||||+||+ ||..||.||+.+
T Consensus 61 AyEVLsDp~-----------------kRaIYD~~G~qG 81 (546)
T KOG0718|consen 61 AYEVLSDPQ-----------------KRAIYDNYGEQG 81 (546)
T ss_pred HHHHhcChH-----------------HHHHHHHhhhcc
Confidence 999999976 799999999853
No 30
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=1.4e-10 Score=146.83 Aligned_cols=66 Identities=39% Similarity=0.731 Sum_probs=59.3
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHHHHHhh
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvLs 1579 (2462)
.++|++|||++ +|+.++|||||||||++||||||++ ++++|++|++|||+|+
T Consensus 3 ~d~y~iLgv~~-------------------------~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~ 57 (397)
T PRK14281 3 RDYYEVLGVSR-------------------------SADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLS 57 (397)
T ss_pred CChhhhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhh
Confidence 47899999994 7899999999999999999999973 6799999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
|+. +|..||+||+.
T Consensus 58 d~~-----------------~r~~yD~~g~~ 71 (397)
T PRK14281 58 NDD-----------------KRRRYDQFGHA 71 (397)
T ss_pred hhh-----------------hhhhhhhccch
Confidence 965 67889999874
No 31
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=1.6e-10 Score=145.89 Aligned_cols=66 Identities=32% Similarity=0.613 Sum_probs=59.0
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC---chHHHHHHHHHHHHHhh
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEvLs 1579 (2462)
.++|++|||++ +|++++||+||||||++||||||+ +++++|++|++|||+|+
T Consensus 9 ~d~y~~Lgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~ 63 (389)
T PRK14295 9 KDYYKVLGVPK-------------------------DATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLS 63 (389)
T ss_pred cCHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHC
Confidence 58999999994 789999999999999999999996 37899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhccccccc----cCCc
Q 000065 1580 ATMQGLQGPQPWRLLLLLKGQCILYRR----YGDV 1610 (2462)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr----~g~~ 1610 (2462)
|+. +|..||+ ||+.
T Consensus 64 d~~-----------------~r~~yD~~~~~~G~~ 81 (389)
T PRK14295 64 DEK-----------------KRKEYDEARSLFGNG 81 (389)
T ss_pred chh-----------------hHHHHHHHHhhhccc
Confidence 975 6778898 8864
No 32
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.99 E-value=3.2e-10 Score=143.25 Aligned_cols=67 Identities=34% Similarity=0.642 Sum_probs=60.2
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC---chHHHHHHHHHHHHHh
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERL 1578 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEvL 1578 (2462)
..++|++|||++ +|+.+|||+|||+||++||||+|+ +++++|++|++|||+|
T Consensus 4 ~~~~y~~Lgv~~-------------------------~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L 58 (386)
T PRK14289 4 KRDYYEVLGVSK-------------------------TATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVL 58 (386)
T ss_pred cCCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHh
Confidence 458999999994 889999999999999999999996 4789999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
+|+. +|..||+||+.
T Consensus 59 ~d~~-----------------~R~~yD~~G~~ 73 (386)
T PRK14289 59 SDPD-----------------KRSRYDQFGHA 73 (386)
T ss_pred cCHH-----------------HHHHHHHhccc
Confidence 9964 67889999875
No 33
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=98.99 E-value=2.6e-10 Score=101.80 Aligned_cols=45 Identities=40% Similarity=0.809 Sum_probs=42.9
Q ss_pred eeEeecCCCcccccccHHHHHHHHhcCCcCcCCceecccCcchhhh
Q 000065 1173 EWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKL 1218 (2462)
Q Consensus 1173 EWyy~~~~g~~~GPvs~~eLk~l~~~g~I~~~T~~Wa~Gm~~W~~l 1218 (2462)
||||.. +|++.||||.++|++++++|.|+++|.||++||++|+|+
T Consensus 1 ~Wy~~~-~g~~~GP~s~~el~~l~~~g~i~~~tlvw~~g~~~W~pl 45 (45)
T PF14237_consen 1 EWYYAR-NGQQQGPFSLEELRQLISSGEIDPDTLVWKEGMSDWKPL 45 (45)
T ss_pred CEEEeC-CCeEECCcCHHHHHHHHHcCCCCCCCeEeCCChhhceEC
Confidence 699985 999999999999999999999999999999999999985
No 34
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=4.1e-10 Score=141.24 Aligned_cols=66 Identities=36% Similarity=0.620 Sum_probs=59.3
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc----hHHHHHHHHHHHHHh
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERL 1578 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEvL 1578 (2462)
.++|++|||++ +|+.++||+|||+||++||||+|++ ++++|++|++||++|
T Consensus 3 ~d~y~vLgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L 57 (365)
T PRK14290 3 KDYYKILGVDR-------------------------NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVL 57 (365)
T ss_pred CChhhhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHh
Confidence 47899999994 7899999999999999999999963 679999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
+|+. +|..||+||+.
T Consensus 58 ~d~~-----------------~r~~yd~~G~~ 72 (365)
T PRK14290 58 SDPQ-----------------KRRQYDQTGTV 72 (365)
T ss_pred cChh-----------------hhhhhcccCCc
Confidence 9965 68889999874
No 35
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.97 E-value=3.9e-10 Score=138.43 Aligned_cols=66 Identities=27% Similarity=0.437 Sum_probs=59.2
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHHhh
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2462)
..++|++|||++ +++.++||+|||+||++||||+|+ +++++|+.|++|||+|+
T Consensus 3 ~~d~y~~Lgv~~-------------------------~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~ 57 (306)
T PRK10266 3 LKDYYAIMGVKP-------------------------TDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLS 57 (306)
T ss_pred cCChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhh
Confidence 358999999994 789999999999999999999985 48899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhccccccccCC
Q 000065 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGD 1609 (2462)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~ 1609 (2462)
|+. +|..||+||.
T Consensus 58 ~~~-----------------kr~~yD~~g~ 70 (306)
T PRK10266 58 DEQ-----------------RRAEYDQLWQ 70 (306)
T ss_pred hHH-----------------HHHHHHHhhc
Confidence 965 6788999875
No 36
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.97 E-value=4.7e-10 Score=140.32 Aligned_cols=65 Identities=42% Similarity=0.715 Sum_probs=58.3
Q ss_pred HHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHHhhcc
Q 000065 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQAT 1581 (2462)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLsd~ 1581 (2462)
++|++|||++ +|+.++||+|||+||++||||+|+ +++++|++|++||++|+|+
T Consensus 1 d~y~~Lgv~~-------------------------~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~ 55 (354)
T TIGR02349 1 DYYEILGVSK-------------------------DASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDP 55 (354)
T ss_pred ChHHhCCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhCh
Confidence 4799999994 789999999999999999999995 5789999999999999996
Q ss_pred ccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1582 MQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1582 ~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
. +|..||+||..
T Consensus 56 ~-----------------~R~~yd~~g~~ 67 (354)
T TIGR02349 56 E-----------------KRAQYDQFGHA 67 (354)
T ss_pred H-----------------HHHhhhhcccc
Confidence 4 68889999865
No 37
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.6e-10 Score=135.18 Aligned_cols=68 Identities=34% Similarity=0.568 Sum_probs=60.4
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHHHHHh
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERL 1578 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvL 1578 (2462)
..|.|.+|||+. ++++.+||||||+.|++|||||||+ +.++|+.+.+||+||
T Consensus 4 ~~dyY~lLgi~~-------------------------~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL 58 (296)
T KOG0691|consen 4 DTDYYDLLGISE-------------------------DATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVL 58 (296)
T ss_pred cchHHHHhCCCC-------------------------CCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHh
Confidence 568999999994 7899999999999999999999975 899999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhccccccccCCcC
Q 000065 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDVL 1611 (2462)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l 1611 (2462)
+|+. .|..||.+|...
T Consensus 59 ~D~~-----------------~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 59 SDEE-----------------SRAAYDKLRKSG 74 (296)
T ss_pred cCHH-----------------HHHHHHHHhhhc
Confidence 9975 566788888653
No 38
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.96 E-value=5.7e-10 Score=140.29 Aligned_cols=65 Identities=37% Similarity=0.679 Sum_probs=59.4
Q ss_pred HHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc--hHHHHHHHHHHHHHhhcc
Q 000065 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQAT 1581 (2462)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~--a~ekF~~I~~AYEvLsd~ 1581 (2462)
++|++|||++ +|+.++||+|||+||++||||+|++ +.++|+.|++||++|+|+
T Consensus 3 d~y~~Lgv~~-------------------------~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~ 57 (371)
T PRK14292 3 DYYELLGVSR-------------------------TASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDA 57 (371)
T ss_pred ChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcch
Confidence 6899999994 7899999999999999999999975 789999999999999996
Q ss_pred ccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1582 MQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1582 ~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
. +|..||+||+.
T Consensus 58 ~-----------------~r~~yd~~G~~ 69 (371)
T PRK14292 58 E-----------------KRAHYDRFGTA 69 (371)
T ss_pred h-----------------hhhhHhhcCCc
Confidence 5 68899999975
No 39
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.96 E-value=5.4e-10 Score=140.45 Aligned_cols=66 Identities=32% Similarity=0.591 Sum_probs=59.4
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHHhhc
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQA 1580 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLsd 1580 (2462)
.++|++|||++ +||.++||+|||+||++||||+|+ .++++|++|++|||+|+|
T Consensus 3 ~~~y~iLgv~~-------------------------~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d 57 (372)
T PRK14300 3 QDYYQILGVSK-------------------------TASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKD 57 (372)
T ss_pred CChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhh
Confidence 47899999994 789999999999999999999996 478899999999999999
Q ss_pred cccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
+. +|..||+||+.
T Consensus 58 ~~-----------------~r~~yD~~G~~ 70 (372)
T PRK14300 58 EQ-----------------KRAAYDRFGHD 70 (372)
T ss_pred Hh-----------------HhhHHHhcccc
Confidence 65 68899999864
No 40
>PHA03102 Small T antigen; Reviewed
Probab=98.96 E-value=9e-10 Score=121.59 Aligned_cols=67 Identities=15% Similarity=0.362 Sum_probs=57.9
Q ss_pred chHHHHHHhcCCccCCCCCCccccccchhhcccccccCCC--CHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHh
Q 000065 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENI--DEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERL 1578 (2462)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a--~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvL 1578 (2462)
+.+++|++|||++ ++ |..+||+|||++|+++||||+++ .++|++|++||++|
T Consensus 3 e~~~l~~vLGl~~-------------------------~A~~s~~eIKkAYr~la~~~HPDkgg~-~e~~k~in~Ay~~L 56 (153)
T PHA03102 3 ESKELMDLLGLPR-------------------------SAWGNLPLMRKAYLRKCLEFHPDKGGD-EEKMKELNTLYKKF 56 (153)
T ss_pred hHHHHHHHcCCCC-------------------------CCCCCHHHHHHHHHHHHHHHCcCCCch-hHHHHHHHHHHHHH
Confidence 3578999999995 77 99999999999999999999864 78999999999999
Q ss_pred hccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
+|+. ++..|+.+|..
T Consensus 57 ~d~~-----------------~r~~yd~~g~~ 71 (153)
T PHA03102 57 RESV-----------------KSLRDLDGEED 71 (153)
T ss_pred hhHH-----------------HhccccccCCc
Confidence 9965 46667777754
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.95 E-value=6.6e-10 Score=145.92 Aligned_cols=68 Identities=28% Similarity=0.434 Sum_probs=61.0
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc--hHHHHHHHHHHHHHhh
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~--a~ekF~~I~~AYEvLs 1579 (2462)
..+.|++|||++ +|+..+|||||||||++|||||||+ +.++|+.|++||++|+
T Consensus 572 d~dYYdILGVs~-------------------------dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLS 626 (1136)
T PTZ00341 572 DTLFYDILGVGV-------------------------NADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILG 626 (1136)
T ss_pred CCChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhC
Confidence 467999999995 8899999999999999999999974 6789999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhccccccccCCcC
Q 000065 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDVL 1611 (2462)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~l 1611 (2462)
|+. +|..||+||...
T Consensus 627 Dp~-----------------kRk~YD~~G~~G 641 (1136)
T PTZ00341 627 DID-----------------KKKMYNKFGYDG 641 (1136)
T ss_pred CHH-----------------HHHHHhhccccc
Confidence 975 688899999754
No 42
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7.1e-10 Score=134.48 Aligned_cols=67 Identities=39% Similarity=0.575 Sum_probs=59.8
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHHhh
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2462)
.+++|+|||++ ++++..|||+||++||++||||.|. ++.++|++|.+|||+|+
T Consensus 42 ~~d~Y~vLgv~-------------------------~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLs 96 (288)
T KOG0715|consen 42 KEDYYKVLGVS-------------------------RNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILS 96 (288)
T ss_pred CcchhhhhCcC-------------------------CCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhc
Confidence 33899999999 4889999999999999999999996 48899999999999999
Q ss_pred ccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1580 d~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
|+. ++..||++|..
T Consensus 97 d~e-----------------KR~~YD~~~~~ 110 (288)
T KOG0715|consen 97 DEE-----------------KRQEYDVYGLE 110 (288)
T ss_pred CHH-----------------HHHHHHHhhhh
Confidence 965 67788888865
No 43
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=9.4e-10 Score=125.27 Aligned_cols=66 Identities=32% Similarity=0.642 Sum_probs=59.2
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC-----chHHHHHHHHHHHHH
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP-----EGREKFLAVQKAYER 1577 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp-----~a~ekF~~I~~AYEv 1577 (2462)
.+.|++|||. +++++.+||||||||+++||||+++ +++++|+.+++||++
T Consensus 14 ~d~YevLGVe-------------------------r~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~i 68 (264)
T KOG0719|consen 14 KDLYEVLGVE-------------------------RDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQI 68 (264)
T ss_pred cCHHHHhhhc-------------------------ccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 3789999999 5899999999999999999999996 388999999999999
Q ss_pred hhccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1578 Lsd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
|+|.+ +|..||.-|..
T Consensus 69 LsDee-----------------kR~~YDetG~i 84 (264)
T KOG0719|consen 69 LSDEE-----------------KRAVYDETGSI 84 (264)
T ss_pred hhHHH-----------------HHHHHhccCCC
Confidence 99965 67888888853
No 44
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.91 E-value=1e-09 Score=138.13 Aligned_cols=66 Identities=38% Similarity=0.700 Sum_probs=59.5
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc--hHHHHHHHHHHHHHhhc
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQA 1580 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~--a~ekF~~I~~AYEvLsd 1580 (2462)
.++|++|||++ +++.++||+|||+|+++||||+|++ ++++|+.|++||++|+|
T Consensus 3 ~d~y~vLgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~ 57 (374)
T PRK14293 3 ADYYEILGVSR-------------------------DADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSD 57 (374)
T ss_pred CChhhhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 36899999994 7899999999999999999999964 78999999999999999
Q ss_pred cccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
+. +|..||+||+.
T Consensus 58 ~~-----------------~R~~yd~~g~~ 70 (374)
T PRK14293 58 PE-----------------TRARYDQFGEA 70 (374)
T ss_pred hH-----------------HHHHHhhcccc
Confidence 65 68899999964
No 45
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=98.87 E-value=3.4e-09 Score=97.45 Aligned_cols=52 Identities=46% Similarity=0.843 Sum_probs=47.7
Q ss_pred HHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHHHHHhhc
Q 000065 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQA 1580 (2462)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a~ekF~~I~~AYEvLsd 1580 (2462)
++|++||++. +++.++||++||+|+++||||++++ +.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~-------------------------~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPP-------------------------DASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 3799999994 7799999999999999999999985 78999999999999986
No 46
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=98.86 E-value=2.9e-09 Score=101.30 Aligned_cols=54 Identities=37% Similarity=0.693 Sum_probs=49.0
Q ss_pred HHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc----hHHHHHHHHHHHHHhh
Q 000065 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEvLs 1579 (2462)
++|++|||++ +++.++||++|+++++++|||+++. +.+.|..|++||++|+
T Consensus 1 ~~y~iLgl~~-------------------------~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~ 55 (64)
T PF00226_consen 1 NPYEILGLPP-------------------------DASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILS 55 (64)
T ss_dssp HHHHHCTSTT-------------------------TSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHCCCCC-------------------------CCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhC
Confidence 5799999994 7899999999999999999999865 4589999999999999
Q ss_pred ccc
Q 000065 1580 ATM 1582 (2462)
Q Consensus 1580 d~~ 1582 (2462)
++.
T Consensus 56 ~~~ 58 (64)
T PF00226_consen 56 DPE 58 (64)
T ss_dssp SHH
T ss_pred CHH
Confidence 975
No 47
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=98.86 E-value=3.8e-09 Score=98.95 Aligned_cols=54 Identities=43% Similarity=0.744 Sum_probs=49.2
Q ss_pred HHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc----hHHHHHHHHHHHHHhh
Q 000065 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEvLs 1579 (2462)
++|++||+++ +++.++||++||++++++|||++++ +.+.|..|++||++|+
T Consensus 2 ~~y~vLgl~~-------------------------~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~ 56 (60)
T smart00271 2 DYYEILGVPR-------------------------DASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLS 56 (60)
T ss_pred CHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHc
Confidence 5799999994 6799999999999999999999984 7889999999999999
Q ss_pred ccc
Q 000065 1580 ATM 1582 (2462)
Q Consensus 1580 d~~ 1582 (2462)
|+.
T Consensus 57 ~~~ 59 (60)
T smart00271 57 DPE 59 (60)
T ss_pred CCC
Confidence 863
No 48
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.82 E-value=1.3e-08 Score=107.32 Aligned_cols=96 Identities=26% Similarity=0.303 Sum_probs=65.4
Q ss_pred HHHHHHhhhhccCCCCChhhh-HHHHHHHHHHHH-HHhhcCCCCCchHHHHHHhcCCccCCCCCCccccccchhhccccc
Q 000065 1458 RYYLRNLCDEIQFPNWPIVEH-VEFLQSLLVMWR-EELTRRPMDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISK 1535 (2462)
Q Consensus 1458 ~yYLr~lcd~~rfP~wpi~dP-~~fL~sll~~wr-~e~~~~~~~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk 1535 (2462)
.|.++-+-....+++-.+..| .+|..++-...- .-+..-...|+.++||++||+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~---------------------- 75 (116)
T PTZ00100 18 RYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISP---------------------- 75 (116)
T ss_pred HHHHHHHHHHhhccCccccCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCC----------------------
Confidence 455555554444454333333 233333211110 11222234678899999999995
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhh
Q 000065 1536 KIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1536 ~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLs 1579 (2462)
+++.++||++||+|+++||||++ +..+.|++|++|||+|.
T Consensus 76 ---~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 76 ---TASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL 115 (116)
T ss_pred ---CCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence 67899999999999999999996 45789999999999985
No 49
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.78 E-value=1.9e-08 Score=121.27 Aligned_cols=91 Identities=32% Similarity=0.478 Sum_probs=69.4
Q ss_pred HHHHHhhhhccCCCCChhhhHHHHHHHHHHHHHHhh-----------cCCCCCchHHHHHHhcCCccCCCCCCccccccc
Q 000065 1459 YYLRNLCDEIQFPNWPIVEHVEFLQSLLVMWREELT-----------RRPMDLSEEEACKILEISLDDVSSDDSHKSYSS 1527 (2462)
Q Consensus 1459 yYLr~lcd~~rfP~wpi~dP~~fL~sll~~wr~e~~-----------~~~~~~s~~~ay~iLgi~~~~~~~~~~~~~~~~ 1527 (2462)
.+|+..|+.+.++ +.+| ..+..++..+.. +.+..++.++||++||+++
T Consensus 152 ~~L~~Ia~~Lgis------~~df-~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~-------------- 210 (267)
T PRK09430 152 QVLYVIAEELGFS------RFQF-DQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSE-------------- 210 (267)
T ss_pred HHHHHHHHHcCCC------HHHH-HHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCC--------------
Confidence 4788899998865 3444 455555443211 1122467899999999994
Q ss_pred hhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC----------chHHHHHHHHHHHHHhhcc
Q 000065 1528 EEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP----------EGREKFLAVQKAYERLQAT 1581 (2462)
Q Consensus 1528 ~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp----------~a~ekF~~I~~AYEvLsd~ 1581 (2462)
++|.++||++||+|+++|||||+. .+.++|++|++|||+|+..
T Consensus 211 -----------~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 211 -----------SDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred -----------CCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999962 2678999999999999973
No 50
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=6.7e-09 Score=117.89 Aligned_cols=55 Identities=38% Similarity=0.683 Sum_probs=49.6
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC---chHHHHHHHHHHHHHhh
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp---~a~ekF~~I~~AYEvLs 1579 (2462)
=|.|+|||+++ .++++|||||||+|++||||||+| +.++.|.+|++||+.|+
T Consensus 99 fDPyEILGl~p-------------------------gas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLT 153 (230)
T KOG0721|consen 99 FDPYEILGLDP-------------------------GASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALT 153 (230)
T ss_pred CCcHHhhCCCC-------------------------CCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhc
Confidence 36799999996 789999999999999999999985 36789999999999999
Q ss_pred ccc
Q 000065 1580 ATM 1582 (2462)
Q Consensus 1580 d~~ 1582 (2462)
|+.
T Consensus 154 D~~ 156 (230)
T KOG0721|consen 154 DKK 156 (230)
T ss_pred chh
Confidence 964
No 51
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.64 E-value=2.2e-08 Score=129.76 Aligned_cols=66 Identities=32% Similarity=0.596 Sum_probs=58.4
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHHhhc
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQA 1580 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLsd 1580 (2462)
.++|++|||++ +++.++||+|||+|+++|||||++ ++.++|+.|++||++|+|
T Consensus 2 ~DYYeVLGVs~-------------------------dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSD 56 (871)
T TIGR03835 2 RDYYEVLGIDR-------------------------DADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSN 56 (871)
T ss_pred CChhHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCC
Confidence 36899999994 789999999999999999999986 467899999999999999
Q ss_pred cccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1581 ~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
+. +|..||+||..
T Consensus 57 P~-----------------KRa~YD~fG~a 69 (871)
T TIGR03835 57 PK-----------------KRANYDKYGHD 69 (871)
T ss_pred HH-----------------HHHHHhhhccc
Confidence 65 67889988864
No 52
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=7.2e-08 Score=110.62 Aligned_cols=56 Identities=43% Similarity=0.694 Sum_probs=51.0
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc----hHHHHHHHHHHHHH
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYER 1577 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEv 1577 (2462)
..+.|++||+.+ +++..+||++||++|++||||++++ ++++|+.|++||++
T Consensus 5 ~~~~y~iLgv~~-------------------------~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~v 59 (237)
T COG2214 5 LLDYYEILGVPP-------------------------NASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEI 59 (237)
T ss_pred hhhHHHHhCCCC-------------------------CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 457899999994 7899999999999999999999984 56999999999999
Q ss_pred hhccc
Q 000065 1578 LQATM 1582 (2462)
Q Consensus 1578 Lsd~~ 1582 (2462)
|+|+.
T Consensus 60 Lsd~~ 64 (237)
T COG2214 60 LSDPE 64 (237)
T ss_pred hhCHH
Confidence 99965
No 53
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.50 E-value=1.1e-07 Score=113.36 Aligned_cols=58 Identities=31% Similarity=0.540 Sum_probs=52.5
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc------hHHHHHHHHHHHH
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE------GREKFLAVQKAYE 1576 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~------a~ekF~~I~~AYE 1576 (2462)
.|+|+||||. |+|+..||-|||||+|.|||||--.+ +++||..|..|-|
T Consensus 394 RDYYKILGVk-------------------------RnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKE 448 (504)
T KOG0624|consen 394 RDYYKILGVK-------------------------RNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKE 448 (504)
T ss_pred chHHHHhhhc-------------------------ccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHH
Confidence 5799999999 68999999999999999999998643 7789999999999
Q ss_pred HhhccccCC
Q 000065 1577 RLQATMQGL 1585 (2462)
Q Consensus 1577 vLsd~~~r~ 1585 (2462)
||+||+.|.
T Consensus 449 VLsd~EkRr 457 (504)
T KOG0624|consen 449 VLSDPEKRR 457 (504)
T ss_pred hhcCHHHHh
Confidence 999998664
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=6e-08 Score=111.36 Aligned_cols=56 Identities=29% Similarity=0.602 Sum_probs=50.4
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHHhh
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2462)
.+++|++|||+ +.++..+|+||||+||++||||+++ ++.+.|..|..|||+|.
T Consensus 32 ~enCYdVLgV~-------------------------Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilk 86 (329)
T KOG0722|consen 32 AENCYDVLGVA-------------------------REANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILK 86 (329)
T ss_pred chhHHHHhhhh-------------------------hhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhccccccc
Confidence 58899999999 4678899999999999999999986 46778999999999999
Q ss_pred ccc
Q 000065 1580 ATM 1582 (2462)
Q Consensus 1580 d~~ 1582 (2462)
|..
T Consensus 87 d~e 89 (329)
T KOG0722|consen 87 DNE 89 (329)
T ss_pred chh
Confidence 965
No 55
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.46 E-value=0.00048 Score=99.97 Aligned_cols=296 Identities=17% Similarity=0.176 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHhhCccchhcccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcC-ChhHHHHHHhhcchHHHHHHH
Q 000065 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQM 2104 (2462)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaiA~~~~vl~~Ll~l 2104 (2462)
.+.+..+|.++...+++....+...+.++.|.++|... +..+|..++..|..++. +..=...|+..+ .++.|..+
T Consensus 421 Q~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~---s~~iQ~~A~~~L~nLa~~ndenr~aIieaG-aIP~LV~L 496 (2102)
T PLN03200 421 QEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS---SEQQQEYAVALLAILTDEVDESKWAITAAG-GIPPLVQL 496 (2102)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHHH
Confidence 45567788898888888888888899999999999864 56899999999988875 443334566655 88999999
Q ss_pred HhhC-cchHHHHHHHHHHhhcchHHHHHHH-HcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 000065 2105 LHYA-PACREGVLHVLYALASTPELAWAAA-KHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLA 2182 (2462)
Q Consensus 2105 L~~~-p~~~~~~L~~L~aL~s~t~lvkqal-~~GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~aD~lhGPrV~~~L~ 2182 (2462)
|... +.....+.-+|..++.+++=.+..+ ..|++..|+++|.+. .+..|..++..|..+..+ |..-. +
T Consensus 497 L~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg----d~~~q~~Aa~AL~nLi~~---~d~~~--I- 566 (2102)
T PLN03200 497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG----GPKGQEIAAKTLTKLVRT---ADAAT--I- 566 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHhc---cchhH--H-
Confidence 9643 3455668888888887665445545 779999999999764 468889999999998653 21111 1
Q ss_pred hhCcHHHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHH--HHHHHhcCCcccccCCccccccccCC
Q 000065 2183 RFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASD--LYREQMKGRVVDWDVPEQASAQQEMR 2260 (2462)
Q Consensus 2183 KfLP~~fvdamrdsp~~a~v~~fes~~EnPELIWn~~mR~~v~~~i~~~~~~--~~~~Q~~~~~~~W~lPe~f~~y~~l~ 2260 (2462)
+ ..+.+|.+.. ..+...+-..+..+..- ....+..+ ..
T Consensus 567 --------------~--~Lv~LLlsdd--------~~~~~~aL~vLgnIlsl~~~~d~~~~g----------------~~ 606 (2102)
T PLN03200 567 --------------S--QLTALLLGDL--------PESKVHVLDVLGHVLSVASLEDLVREG----------------SA 606 (2102)
T ss_pred --------------H--HHHHHhcCCC--------hhHHHHHHHHHHHHHhhcchhHHHHHh----------------hh
Confidence 1 1335554432 23334444444333220 00000000 00
Q ss_pred CCcEEeeeeehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCC
Q 000065 2261 DEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGY 2340 (2462)
Q Consensus 2261 ~El~VGGVYlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~A~v~LL~~qp~LaD~vp~lG~ 2340 (2462)
+ .+-++.+++++...+ .+.-+....++-.++..++...+.+...|.
T Consensus 607 ---------------~------------~ggL~~Lv~LL~sgs-------~~ikk~Aa~iLsnL~a~~~d~~~avv~aga 652 (2102)
T PLN03200 607 ---------------A------------NDALRTLIQLLSSSK-------EETQEKAASVLADIFSSRQDLCESLATDEI 652 (2102)
T ss_pred ---------------c------------cccHHHHHHHHcCCC-------HHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence 0 045667777766542 223345667888899999999999999999
Q ss_pred hHHHHHHHHhhccccccchhhhhcCCccccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhC--ChhHHHHhhhccCCC
Q 000065 2341 VPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA--STTCAEAMAATSTGT 2418 (2462)
Q Consensus 2341 lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vLh~Ls~--s~~Cv~ala~~~~~~ 2418 (2462)
+|-|+.+|.+.+ ..+++.+-..|-.|+. ++.-...+.+.++
T Consensus 653 IpPLV~LLss~~-----------------------------------~~v~keAA~AL~nL~~~~~~~q~~~~v~~Ga-- 695 (2102)
T PLN03200 653 INPCIKLLTNNT-----------------------------------EAVATQSARALAALSRSIKENRKVSYAAEDA-- 695 (2102)
T ss_pred HHHHHHHHhcCC-----------------------------------hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCC--
Confidence 999999998643 1345566666666663 3333345566777
Q ss_pred CcchHHHHHHhccCCcc-h-hHHHHHHHHHhcC
Q 000065 2419 PQVVPILMKAIGWQGGS-I-LALETLKRVVVAG 2449 (2462)
Q Consensus 2419 ~~~v~~l~~a~~~~~~~-~-~a~etl~r~~~~~ 2449 (2462)
||||++-++..... + .|+++|..++..+
T Consensus 696 ---V~pL~~LL~~~d~~v~e~Al~ALanLl~~~ 725 (2102)
T PLN03200 696 ---IKPLIKLAKSSSIEVAEQAVCALANLLSDP 725 (2102)
T ss_pred ---HHHHHHHHhCCChHHHHHHHHHHHHHHcCc
Confidence 99999999875433 3 9999999999876
No 56
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.8e-07 Score=113.97 Aligned_cols=64 Identities=30% Similarity=0.402 Sum_probs=56.9
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHHhh
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp--~a~ekF~~I~~AYEvLs 1579 (2462)
.-|||.+||+.. ++|+++|||.|||+|+.-|||||. .|+|.|+.++.|||+|+
T Consensus 234 ~~daYsvlGl~~-------------------------d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig 288 (490)
T KOG0720|consen 234 ILDAYSALGLPS-------------------------DCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIG 288 (490)
T ss_pred CCCchhhcCCCC-------------------------CCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhc
Confidence 567999999994 789999999999999999999994 68999999999999999
Q ss_pred ccccCCCCCCh
Q 000065 1580 ATMQGLQGPQP 1590 (2462)
Q Consensus 1580 d~~~r~~~p~~ 1590 (2462)
|+..|..|+..
T Consensus 289 ~~~kR~eYd~e 299 (490)
T KOG0720|consen 289 DSVKRKEYDLE 299 (490)
T ss_pred chhhhhHHHHH
Confidence 98877766653
No 57
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.30 E-value=6.7e-07 Score=101.53 Aligned_cols=56 Identities=21% Similarity=0.473 Sum_probs=47.7
Q ss_pred HHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc--------hHHHHHHHHHHH
Q 000065 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKAY 1575 (2462)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~--------a~ekF~~I~~AY 1575 (2462)
++|++||+++. -++|..+||++||++++++||||... +.++|..||+||
T Consensus 2 ~yf~llgl~~~-----------------------~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY 58 (171)
T PRK05014 2 DYFTLFGLPAR-----------------------YDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAY 58 (171)
T ss_pred CHHHHCCCCCC-----------------------CCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 57999999852 15788999999999999999999642 346899999999
Q ss_pred HHhhccc
Q 000065 1576 ERLQATM 1582 (2462)
Q Consensus 1576 EvLsd~~ 1582 (2462)
++|+||.
T Consensus 59 ~~L~dp~ 65 (171)
T PRK05014 59 QTLKHPL 65 (171)
T ss_pred HHHCChh
Confidence 9999986
No 58
>PHA02624 large T antigen; Provisional
Probab=98.30 E-value=7e-07 Score=115.61 Aligned_cols=58 Identities=22% Similarity=0.474 Sum_probs=51.4
Q ss_pred chHHHHHHhcCCccCCCCCCccccccchhhcccccccCCC--CHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHh
Q 000065 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENI--DEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERL 1578 (2462)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a--~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvL 1578 (2462)
..+++|++||+++ ++ +..+||+|||++|++|||||++ ..++|++|++||++|
T Consensus 9 e~~elyelLGL~~-------------------------~A~gs~~eIKkAYRkLAkkyHPDKgG-deekfk~Ln~AYevL 62 (647)
T PHA02624 9 ESKELMDLLGLPM-------------------------AAWGNLPLMRKAYLRKCKEYHPDKGG-DEEKMKRLNSLYKKL 62 (647)
T ss_pred HHHHHHHHcCCCC-------------------------CCCCCHHHHHHHHHHHHHHHCcCCCC-cHHHHHHHHHHHHHH
Confidence 3578999999994 77 8999999999999999999975 478999999999999
Q ss_pred hccccC
Q 000065 1579 QATMQG 1584 (2462)
Q Consensus 1579 sd~~~r 1584 (2462)
+|+..+
T Consensus 63 ~d~~k~ 68 (647)
T PHA02624 63 QEGVKS 68 (647)
T ss_pred hcHHHh
Confidence 997644
No 59
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.23 E-value=8.7e-07 Score=100.12 Aligned_cols=56 Identities=30% Similarity=0.492 Sum_probs=47.2
Q ss_pred HHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCchHH------HHHHHHHHHHH
Q 000065 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGRE------KFLAVQKAYER 1577 (2462)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~e------kF~~I~~AYEv 1577 (2462)
++|++||+++. -++|..+|+++||+|++++||||+....+ .+..||+||++
T Consensus 3 ~yf~llgl~~~-----------------------f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~ 59 (166)
T PRK01356 3 NYFQLLGLPQE-----------------------YNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYST 59 (166)
T ss_pred CHHHHcCCCCC-----------------------CCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57999999952 15789999999999999999999865333 46799999999
Q ss_pred hhccc
Q 000065 1578 LQATM 1582 (2462)
Q Consensus 1578 Lsd~~ 1582 (2462)
|+||.
T Consensus 60 L~dp~ 64 (166)
T PRK01356 60 LKDAL 64 (166)
T ss_pred hCCHH
Confidence 99975
No 60
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=8.4e-07 Score=106.77 Aligned_cols=66 Identities=44% Similarity=0.768 Sum_probs=56.5
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc----hHHHHHHHHHHHHHh
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERL 1578 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEvL 1578 (2462)
.++|++|+|.. ++++.+||+|||++|++||||||+. ++++|+++.+|||+|
T Consensus 3 ~d~~~~l~i~~-------------------------~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~l 57 (306)
T KOG0714|consen 3 KDYYKILGIAR-------------------------SASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVL 57 (306)
T ss_pred ccHHHHhCccc-------------------------cccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhcccccc
Confidence 46899999983 6677799999999999999999875 345799999999999
Q ss_pred hccccCCCCCChhhHHhhhhhccccccccCCc
Q 000065 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2462)
Q Consensus 1579 sd~~~r~~~p~~~~~~liLr~qr~~Ydr~g~~ 1610 (2462)
+|+. ++..||+||+.
T Consensus 58 s~~~-----------------kr~~~d~~~~~ 72 (306)
T KOG0714|consen 58 SDPK-----------------KRKIYDQYGEE 72 (306)
T ss_pred CCHH-----------------HhhhccccCcc
Confidence 9964 67889999973
No 61
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=2.6e-06 Score=104.60 Aligned_cols=62 Identities=39% Similarity=0.582 Sum_probs=52.9
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc----hHHHHHHHHHHHHH
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYER 1577 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEv 1577 (2462)
..+.|+|||++ +++++.+|||||||+|+.||||||-+ ++.+|+.|-+||.+
T Consensus 372 Rkd~ykilGi~-------------------------~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~i 426 (486)
T KOG0550|consen 372 RKDWYKILGIS-------------------------RNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTI 426 (486)
T ss_pred hhhHHHHhhhh-------------------------hhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHH
Confidence 45689999988 47899999999999999999999854 67799999999999
Q ss_pred hhccccCCCCC
Q 000065 1578 LQATMQGLQGP 1588 (2462)
Q Consensus 1578 Lsd~~~r~~~p 1588 (2462)
|+|+..+..++
T Consensus 427 l~d~~kr~r~d 437 (486)
T KOG0550|consen 427 LSDPMKRVRFD 437 (486)
T ss_pred hcCHHHHhhcc
Confidence 99987554433
No 62
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.16 E-value=2e-06 Score=98.12 Aligned_cols=57 Identities=19% Similarity=0.390 Sum_probs=47.6
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc---h-----HHHHHHHHHH
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---G-----REKFLAVQKA 1574 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~---a-----~ekF~~I~~A 1574 (2462)
.++|++||+++. -++|..+||++||+|++++|||+++. . .+.+..||+|
T Consensus 6 ~dyf~llglp~~-----------------------f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~A 62 (176)
T PRK03578 6 DDHFSLFGLPAR-----------------------FALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEA 62 (176)
T ss_pred CCHHHHcCCCCC-----------------------CCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 478999999952 15789999999999999999999853 2 2346899999
Q ss_pred HHHhhccc
Q 000065 1575 YERLQATM 1582 (2462)
Q Consensus 1575 YEvLsd~~ 1582 (2462)
|++|+||.
T Consensus 63 Y~tL~~p~ 70 (176)
T PRK03578 63 YQTLRDPL 70 (176)
T ss_pred HHHhCChh
Confidence 99999975
No 63
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.12 E-value=2.1e-06 Score=97.62 Aligned_cols=57 Identities=23% Similarity=0.435 Sum_probs=48.6
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc--------hHHHHHHHHHH
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKA 1574 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~--------a~ekF~~I~~A 1574 (2462)
.+.|++||+++. -+.|..+|+++||+|+++||||++.. +.++|..||+|
T Consensus 4 ~~~F~l~~l~~~-----------------------f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~A 60 (173)
T PRK00294 4 PCHFALFDLQPS-----------------------FRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEA 60 (173)
T ss_pred CChhhhcCcCCC-----------------------CCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 457899999862 26789999999999999999999853 34679999999
Q ss_pred HHHhhccc
Q 000065 1575 YERLQATM 1582 (2462)
Q Consensus 1575 YEvLsd~~ 1582 (2462)
|++|+||.
T Consensus 61 Y~~L~~p~ 68 (173)
T PRK00294 61 YQTLKSPP 68 (173)
T ss_pred HHHhCChh
Confidence 99999985
No 64
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.12 E-value=1.4e-06 Score=106.69 Aligned_cols=55 Identities=38% Similarity=0.646 Sum_probs=49.0
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc--------hHHHHHHHHHH
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKA 1574 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~--------a~ekF~~I~~A 1574 (2462)
=|.|+||||+. ++++++|||+||+|++|+||||.+. -+|+..+|++|
T Consensus 98 fDPyEILGI~~-------------------------~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkA 152 (610)
T COG5407 98 FDPYEILGIDQ-------------------------DTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKA 152 (610)
T ss_pred CChHHhhcccC-------------------------CCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHH
Confidence 35799999993 7799999999999999999999753 57899999999
Q ss_pred HHHhhccc
Q 000065 1575 YERLQATM 1582 (2462)
Q Consensus 1575 YEvLsd~~ 1582 (2462)
|+.|+|..
T Consensus 153 Y~~lTd~k 160 (610)
T COG5407 153 YGLLTDKK 160 (610)
T ss_pred HHhhhhHH
Confidence 99999964
No 65
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.72 E-value=0.0084 Score=87.85 Aligned_cols=141 Identities=21% Similarity=0.231 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhhCccchhcccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhc-CChhHHHHHHhhcchHHHHHHHH
Q 000065 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLT-TCASCLEAMVADGSSLLLLLQML 2105 (2462)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls-~n~~CVeaiA~~~~vl~~Ll~lL 2105 (2462)
..+..||.||-..+.+....+...|.++.|..+|... ++.++..|..+|..+. ......+.+.+.+ +++.|+.+|
T Consensus 165 ~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~---d~~lQ~eAa~aLa~Lass~ee~~~aVIeaG-aVP~LV~LL 240 (2102)
T PLN03200 165 GLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG---NSDAQANAASLLARLMMAFESSISKVLDAG-AVKQLLKLL 240 (2102)
T ss_pred HHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHH
Confidence 4467899999999988877667778999999999753 5688999999885555 4466777787755 789999999
Q ss_pred hhC--cchHHHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhc-CCCC----CCcHHHHHHHHHHHHHHhcCC
Q 000065 2106 HYA--PACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLL-PSQQ----ETPLQQRAAAASLLGKLVGQP 2171 (2462)
Q Consensus 2106 ~~~--p~~~~~~L~~L~aL~s-~t~lvkqal~~GgvlyLL~LL~-~~~e----~~~~~~R~~aA~lL~km~aD~ 2171 (2462)
... +..+..+.-+|..+++ +++..+..++.||+..|++++. ++++ +.+...++.++-.|+-+..++
T Consensus 241 ~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 241 GQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM 314 (2102)
T ss_pred ccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence 652 3556778888888888 4688888899999999999886 3321 134556888999999998874
No 66
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=97.69 E-value=3.6e-05 Score=86.56 Aligned_cols=44 Identities=27% Similarity=0.568 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCc--------hHHHHHHHHHHHHHhhccc
Q 000065 1539 NIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKAYERLQATM 1582 (2462)
Q Consensus 1539 ~a~e~~IKkAYRkLa~k~HPDKnp~--------a~ekF~~I~~AYEvLsd~~ 1582 (2462)
+.|..+|+++||+|++++|||+.+. +.++|..||+||++|+||.
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~ 53 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPL 53 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChh
Confidence 3578899999999999999998532 4578999999999999986
No 67
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.65 E-value=0.016 Score=78.75 Aligned_cols=382 Identities=19% Similarity=0.241 Sum_probs=216.8
Q ss_pred CCCchhhHHHhcCHHHHHHHHHHhhhcccCCCCCCCccceeehhhhhhhhhhccChHHHHHHHhhcchHHHHHHhhcccc
Q 000065 1658 SSLNGEELVRDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCTELEL 1737 (2462)
Q Consensus 1658 S~lNaeeL~re~G~~~L~~~l~rC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l~l~~ 1737 (2462)
-..+...++..|++..|-++++|= ...+...++.++..+|-|.+++..|.+.. ++.-+++++.-++
T Consensus 279 d~~ve~kM~~~~iV~~Lv~~Ldr~-------------n~ellil~v~fLkkLSi~~ENK~~m~~~g-iV~kL~kLl~s~~ 344 (708)
T PF05804_consen 279 DPRVELKMVNKGIVSLLVKCLDRE-------------NEELLILAVTFLKKLSIFKENKDEMAESG-IVEKLLKLLPSEN 344 (708)
T ss_pred ChHHHHHHHhcCCHHHHHHHHcCC-------------CHHHHHHHHHHHHHHcCCHHHHHHHHHcC-CHHHHHHHhcCCC
Confidence 345666777788988887777632 12355678889999999999999998764 6677888887544
Q ss_pred chhHHHHHHHHHHHhhCCHHHHHHHHHhccHHHHHHHhhcCCCcccccCccccccccccHHHHHHHHHHHHHHHHHHhhC
Q 000065 1738 VPGAVDAALQTIAHVSVSSELQDALLKAGALWFLLPLLLQYDSTAEKSDTNESHGVGASVQIAKNMHAVRAAQALSRLSG 1817 (2462)
Q Consensus 1738 ~~~l~~aALe~v~~~a~~~elq~~i~~~GVLw~LL~lLf~yD~Tlees~le~~~~~~~~~qivkn~lAk~a~~aL~~L~g 1817 (2462)
..++..+|..+.+++-|++++.+|.+.|++..|..+|.+.+ . ... ++..|..|
T Consensus 345 -~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~--------------~~v--------al~iLy~L-- 397 (708)
T PF05804_consen 345 -EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--F--------------REV--------ALKILYNL-- 397 (708)
T ss_pred -HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--h--------------HHH--------HHHHHHHh--
Confidence 57899999999999999999999999999999999985311 1 111 11222222
Q ss_pred cCCCCCCCCccHHHHHHH--HHhchHHHHHHhhccCh-------HHHHHHhhccCCCcccccchhhHHHHHHHHHHHHhc
Q 000065 1818 LCSNGISIPYNEAAASAL--RALLTPKLASLLKDQIP-------KNLLSKLNTNLESPEIIWNSSTRAELLKFVDQQRAS 1888 (2462)
Q Consensus 1818 ~~~d~~~~P~~~~v~~~L--~klLpP~l~~~L~d~~p-------~~~L~~L~Sn~EnPeLIWnn~tRaeL~~~L~~q~~~ 1888 (2462)
+.|. ..+..+ +..+ |.+++.|-..+. -.++.-+..+.+|-++|=.++--..|++..-+ .
T Consensus 398 -S~dd-------~~r~~f~~TdcI-p~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~---~ 465 (708)
T PF05804_consen 398 -SMDD-------EARSMFAYTDCI-PQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALK---T 465 (708)
T ss_pred -ccCH-------hhHHHHhhcchH-HHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh---c
Confidence 1111 011111 1111 334444333211 12333345555665555433322222222110 0
Q ss_pred cCCCCCcccccccccccccccCCcEEeeEEEeeeccCCCCCCCChHHHHHHHHHHHHHHhhcccCCCCcccccccccccc
Q 000065 1889 QSPDGSYDLKDSNGFLYEALSKELYVGNVYLRVYNDQPDFEITEPEAFCVALIDFISYLVHNQSATKSDVQGEESLDGLS 1968 (2462)
Q Consensus 1889 ~~~~~~w~l~~~~~f~Y~~l~~EL~VGGVYLRlfneqP~w~Lr~Pk~Fl~~LLdfl~~~~~~~~~~~~d~~~~~~~~~~~ 1968 (2462)
+++ --.. .||-.-..++ +.+ ..| .+|+..++.-...
T Consensus 466 ~D~-------lLlK---------------lIRNiS~h~~-~~k--~~f----~~~i~~L~~~v~~--------------- 501 (708)
T PF05804_consen 466 RDP-------LLLK---------------LIRNISQHDG-PLK--ELF----VDFIGDLAKIVSS--------------- 501 (708)
T ss_pred ccH-------HHHH---------------HHHHHHhcCc-hHH--HHH----HHHHHHHHHHhhc---------------
Confidence 000 0000 0111111111 000 111 1233322211000
Q ss_pred chhhhccccCCCCCCccccCCCCcccCccccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHhhCccchhccc
Q 000065 1969 SKIVQDKLSLDPSSSKTFELPSDATDSSMNERKVNDESLAVSDRKVTGKEDSVMIKNLQFGLTSLQNILTSNPNLASIFS 2048 (2462)
Q Consensus 1969 ~~~~qd~~~~~~~~~~~~ev~~~~~~~~~~~~~l~~~s~~~s~~~~~~~~d~e~l~~l~maL~AL~nLL~~nP~la~~~~ 2048 (2462)
+++.+. +.-++-.|.|+=-.+.+-+..+.
T Consensus 502 ------------------------------------------------~~~ee~---~vE~LGiLaNL~~~~ld~~~ll~ 530 (708)
T PF05804_consen 502 ------------------------------------------------GDSEEF---VVECLGILANLTIPDLDWAQLLQ 530 (708)
T ss_pred ------------------------------------------------CCcHHH---HHHHHHHHHhcccCCcCHHHHHH
Confidence 001111 23334445555444444444454
Q ss_pred ccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhhCcchHHHHHHHH---HHhhcc
Q 000065 2049 TKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHYAPACREGVLHVL---YALAST 2125 (2462)
Q Consensus 2049 s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~~p~~~~~~L~~L---~aL~s~ 2125 (2462)
.++-++-|...|... ...+.+..-+..++..++....|..-++.++ ++..|..+|....+--+.+++++ |.+..+
T Consensus 531 ~~~llp~L~~~L~~g-~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sg-li~~Li~LL~~kqeDdE~VlQil~~f~~ll~h 608 (708)
T PF05804_consen 531 EYNLLPWLKDLLKPG-ASEDDLLLEVVILLGTLASDPECAPLLAKSG-LIPTLIELLNAKQEDDEIVLQILYVFYQLLFH 608 (708)
T ss_pred hCCHHHHHHHHhCCC-CCChHHHHHHHHHHHHHHCCHHHHHHHHhCC-hHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC
Confidence 455555555666533 3345677777778888999999999888756 77888888887655455555555 666667
Q ss_pred hHHHHHHHH-cCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhc-CCCCChHHHHHHHhhCcHHHHHHH
Q 000065 2126 PELAWAAAK-HGGVVYILELLLPSQQETPLQQRAAAASLLGKLVG-QPMHGPRVAITLARFLPDGLVSVI 2193 (2462)
Q Consensus 2126 t~lvkqal~-~GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~a-D~lhGPrV~~~L~KfLP~~fvdam 2193 (2462)
.+-....++ .+.+-||++++-+ .|+.+|..|-.+|.-++. |+-+|.||+.-=-+.-=.-.++.+
T Consensus 609 ~~tr~~ll~~~~~~~ylidL~~d----~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v 674 (708)
T PF05804_consen 609 EETREVLLKETEIPAYLIDLMHD----KNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMV 674 (708)
T ss_pred hHHHHHHHhccchHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHH
Confidence 766666655 6677899999975 378999999888887775 666666665544443333444443
No 68
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00017 Score=84.17 Aligned_cols=59 Identities=27% Similarity=0.291 Sum_probs=50.1
Q ss_pred hHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCC-----CchHHHHHHHHHHHH
Q 000065 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKN-----PEGREKFLAVQKAYE 1576 (2462)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKn-----p~a~ekF~~I~~AYE 1576 (2462)
..+.|.+||++. ..-.+++.+|.++.++...+|||||. .+.++-|+-||+|||
T Consensus 42 ~~DlYa~lgLsk----------------------yR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~e 99 (379)
T COG5269 42 KVDLYALLGLSK----------------------YRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKARE 99 (379)
T ss_pred hhhHHHHhchHh----------------------hhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHH
Confidence 357888899874 23467888999999999999999996 467899999999999
Q ss_pred Hhhccc
Q 000065 1577 RLQATM 1582 (2462)
Q Consensus 1577 vLsd~~ 1582 (2462)
+|+|+.
T Consensus 100 vL~D~~ 105 (379)
T COG5269 100 VLGDRK 105 (379)
T ss_pred HhccHH
Confidence 999965
No 69
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00015 Score=81.81 Aligned_cols=54 Identities=37% Similarity=0.714 Sum_probs=48.4
Q ss_pred HHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc----hHHHHHHHHHHHHHhh
Q 000065 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~----a~ekF~~I~~AYEvLs 1579 (2462)
++|++|.|.+ ..+.++||+.||+|+...||||||+ |...|..|.+||..|-
T Consensus 54 NpfeVLqIdp-------------------------ev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~ 108 (250)
T KOG1150|consen 54 NPFEVLQIDP-------------------------EVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLE 108 (250)
T ss_pred ChHHHHhcCC-------------------------CCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 5899999986 5688999999999999999999997 5678999999999999
Q ss_pred ccc
Q 000065 1580 ATM 1582 (2462)
Q Consensus 1580 d~~ 1582 (2462)
|+.
T Consensus 109 n~~ 111 (250)
T KOG1150|consen 109 NDK 111 (250)
T ss_pred CHH
Confidence 864
No 70
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=96.92 E-value=0.0008 Score=76.97 Aligned_cols=56 Identities=21% Similarity=0.388 Sum_probs=46.1
Q ss_pred HHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc--------hHHHHHHHHHHH
Q 000065 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKAY 1575 (2462)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~--------a~ekF~~I~~AY 1575 (2462)
+++++||+++. =+.|...|++.||+|.+++|||+... +.+.-..||+||
T Consensus 3 nyF~lf~lp~~-----------------------F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY 59 (173)
T PRK01773 3 NPFALFDLPVD-----------------------FQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDAL 59 (173)
T ss_pred ChHHhcCCCCC-----------------------CCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 47889999852 26799999999999999999999632 234567899999
Q ss_pred HHhhccc
Q 000065 1576 ERLQATM 1582 (2462)
Q Consensus 1576 EvLsd~~ 1582 (2462)
.+|+||.
T Consensus 60 ~tLkdPl 66 (173)
T PRK01773 60 QILKDPI 66 (173)
T ss_pred HHHCChH
Confidence 9999985
No 71
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.52 E-value=0.15 Score=69.79 Aligned_cols=122 Identities=21% Similarity=0.274 Sum_probs=103.3
Q ss_pred hCccchhcccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhh-CcchHHHHHH
Q 000065 2039 SNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY-APACREGVLH 2117 (2462)
Q Consensus 2039 ~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~-~p~~~~~~L~ 2117 (2462)
.++.++..+...+.+..|..+|... +..+...++..|..||-..+|-..|++.+ ++..|.+++.+ +.+.+..+|.
T Consensus 278 ed~~ve~kM~~~~iV~~Lv~~Ldr~---n~ellil~v~fLkkLSi~~ENK~~m~~~g-iV~kL~kLl~s~~~~l~~~aLr 353 (708)
T PF05804_consen 278 EDPRVELKMVNKGIVSLLVKCLDRE---NEELLILAVTFLKKLSIFKENKDEMAESG-IVEKLLKLLPSENEDLVNVALR 353 (708)
T ss_pred cChHHHHHHHhcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHcC-CHHHHHHHhcCCCHHHHHHHHH
Confidence 3677888888889999999999643 55688889999999999999999999866 88999999875 3567888999
Q ss_pred HHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000065 2118 VLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2462)
Q Consensus 2118 ~L~aL~s~t~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~aD 2170 (2462)
+|+.|..++++..+.++.|++..|..+|.+. ..|.-+..+|..+..|
T Consensus 354 lL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~------~~~~val~iLy~LS~d 400 (708)
T PF05804_consen 354 LLFNLSFDPELRSQMVSLGLIPKLVELLKDP------NFREVALKILYNLSMD 400 (708)
T ss_pred HHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC------chHHHHHHHHHHhccC
Confidence 9999999999999999999999999999753 3455677888888776
No 72
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.0063 Score=63.43 Aligned_cols=58 Identities=26% Similarity=0.414 Sum_probs=49.1
Q ss_pred CCCchHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHH
Q 000065 1498 MDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYER 1577 (2462)
Q Consensus 1498 ~~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEv 1577 (2462)
+.|+..||..||||++ .++.++||.|.||.....|||+... .-.=.+||||+++
T Consensus 51 ~kMsr~EA~lIL~v~~-------------------------s~~k~KikeaHrriM~~NHPD~GGS-PYlAsKINEAKdl 104 (112)
T KOG0723|consen 51 PKMSRREAALILGVTP-------------------------SLDKDKIKEAHRRIMLANHPDRGGS-PYLASKINEAKDL 104 (112)
T ss_pred cccchHHHHHHhCCCc-------------------------cccHHHHHHHHHHHHHcCCCcCCCC-HHHHHHHHHHHHH
Confidence 3589999999999995 6799999999999999999999854 2333579999999
Q ss_pred hhcc
Q 000065 1578 LQAT 1581 (2462)
Q Consensus 1578 Lsd~ 1581 (2462)
|...
T Consensus 105 Le~~ 108 (112)
T KOG0723|consen 105 LEGT 108 (112)
T ss_pred Hhcc
Confidence 9863
No 73
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0078 Score=69.32 Aligned_cols=56 Identities=27% Similarity=0.551 Sum_probs=48.9
Q ss_pred chHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCc--hHHHHHHHHHHHH-H
Q 000065 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYE-R 1577 (2462)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~--a~ekF~~I~~AYE-v 1577 (2462)
..-++|++||+. +.+|..++|.+|.+|++++|||...+ ..++|.+|.+||. |
T Consensus 45 ~~~e~fril~v~-------------------------e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkv 99 (342)
T KOG0568|consen 45 KIMECFRILGVE-------------------------EGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKV 99 (342)
T ss_pred HHHHHHHHhccc-------------------------ccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHH
Confidence 366899999998 37888999999999999999999864 5679999999999 8
Q ss_pred hhcc
Q 000065 1578 LQAT 1581 (2462)
Q Consensus 1578 Lsd~ 1581 (2462)
|+..
T Consensus 100 lq~~ 103 (342)
T KOG0568|consen 100 LQEK 103 (342)
T ss_pred HHHH
Confidence 8864
No 74
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.8 Score=56.96 Aligned_cols=190 Identities=18% Similarity=0.206 Sum_probs=113.6
Q ss_pred HhhCccchhcccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcC-ChhHHHHHHhhcchHHHHHHHHhhCcch-HHH
Q 000065 2037 LTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQMLHYAPAC-REG 2114 (2462)
Q Consensus 2037 L~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaiA~~~~vl~~Ll~lL~~~p~~-~~~ 2114 (2462)
|.-+|..+..+.-.|-|.+|...|... ++..+|-.|..+|.-|+. +.--+..|-. ...+..+..++...|-. +..
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~--dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvqse 395 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAG--DNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQSE 395 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcC--CchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHHHH
Confidence 667999999999999999999999764 356699999999988886 5555666665 44788888888776632 222
Q ss_pred HHHHHHHhhcchHHHHHH-HHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHH-----------HHHHH
Q 000065 2115 VLHVLYALASTPELAWAA-AKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRV-----------AITLA 2182 (2462)
Q Consensus 2115 ~L~~L~aL~s~t~lvkqa-l~~GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~aD~lhGPrV-----------~~~L~ 2182 (2462)
+--++..|+ -.+--+++ +..|.+..|..+.. +.+.++|--+|+.|.-+.+|--|=.|| +-.|.
T Consensus 396 isac~a~La-l~d~~k~~lld~gi~~iLIp~t~----s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~ 470 (550)
T KOG4224|consen 396 ISACIAQLA-LNDNDKEALLDSGIIPILIPWTG----SESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLA 470 (550)
T ss_pred HHHHHHHHH-hccccHHHHhhcCCcceeecccC----ccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHH
Confidence 111222222 22223333 45554444444443 346678888999999999876665554 44555
Q ss_pred hhCcHHHHHHHhcCchhhHHHhhcccCcCc--ccccCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000065 2183 RFLPDGLVSVIRDGPGEAVVSALEQTTETP--ELVWTPAMAASLSAQISTMASDLYREQMKGR 2243 (2462)
Q Consensus 2183 KfLP~~fvdamrdsp~~a~v~~fes~~EnP--ELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~ 2243 (2462)
||+-..- .+++.-..-+++|+++. |.-| .+|=+ ++-|-+|.++.++..+.++
T Consensus 471 Rfl~S~~-~tf~hia~wTI~qLle~-h~~~~~~~i~~-------~ddii~~~~~~~~r~~~~g 524 (550)
T KOG4224|consen 471 RFLASHE-LTFRHIARWTIQQLLED-HDLPLTAFIQS-------SDDIIELLNDIVARDANNG 524 (550)
T ss_pred HHHhhhH-HHHHHHHHHHHHHHHHh-CCccHHHHHhC-------chhHHHHHHHHHHHhccCC
Confidence 6655421 12222222334555543 3222 12222 2233477788777776655
No 75
>PF02213 GYF: GYF domain; InterPro: IPR003169 The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif. It was identified in the human intracellular protein termed CD2 binding protein 2 (CD2BP2), which binds to a site containing two tandem PPPGHR segments within the cytoplasmic region of CD2. Binding experiments and mutational analyses have demonstrated the critical importance of the GYF tripeptide in ligand binding. A GYF domain is also found in several other eukaryotic proteins of unknown function []. It has been proposed that the GYF domain found in these proteins could also be involved in proline-rich sequence recognition []. Resolution of the structure of the CD2BP2 GYF domain by NMR spectroscopy revealed a compact domain with a beta-beta-alpha-beta-beta topology, where the single alpha-helix is tilted away from the twisted, anti-parallel beta-sheet. The conserved residues of the GYF domain create a contiguous patch of predominantly hydrophobic nature which forms an integral part of the ligand-binding site []. There is limited homology within the C-terminal 20-30 amino acids of various GYF domains, supporting the idea that this part of the domain is structurally but not functionally important [].; GO: 0005515 protein binding; PDB: 1SYX_F 1L2Z_A 1GYF_A 1WH2_A 3FMA_C 3K3V_A.
Probab=94.90 E-value=0.021 Score=54.17 Aligned_cols=44 Identities=16% Similarity=0.371 Sum_probs=37.4
Q ss_pred ceeEeecCCCcccccccHHHHHHHHhcCCcCcCCceecccCcch
Q 000065 1172 KEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDW 1215 (2462)
Q Consensus 1172 KEWyy~~~~g~~~GPvs~~eLk~l~~~g~I~~~T~~Wa~Gm~~W 1215 (2462)
|+|+|.+.+|+.+|||+..+|+.-+++|-.+.+..|+..+-.++
T Consensus 1 ~~W~Y~d~~g~~qGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~ 44 (57)
T PF02213_consen 1 KMWYYKDPDGNIQGPFSSEQMQAWYKQGYFPDDLQVRRVDDTQF 44 (57)
T ss_dssp -EEEEESTTS-EEEEEEHHHHHHHHHTTSSTTT-EEEETTSTTT
T ss_pred CEeEEECCCCCcCCCcCHHHHHHHHHCCCCCCCcEEEEecCCCC
Confidence 68999999999999999999999999999999999998755444
No 76
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.04 E-value=15 Score=49.07 Aligned_cols=159 Identities=12% Similarity=0.162 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhhCccchhcccccCChhhhhcccCCCCCCCCChhhHHHHHH-HHhcCChhHHHHHHhhcchHHHHHHH
Q 000065 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVL-SLLTTCASCLEAMVADGSSLLLLLQM 2104 (2462)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL-~~ls~n~~CVeaiA~~~~vl~~Ll~l 2104 (2462)
+..+.-|+..|-...+.--..+.-.|-++.|..+|.+. ...++.-||+.+ +.+|.+..=-+.+...+ .++.|..+
T Consensus 254 l~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~---~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~-~L~~l~~l 329 (514)
T KOG0166|consen 254 LTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS---SPKVVTPALRAIGNIVTGSDEQTQVVINSG-ALPVLSNL 329 (514)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC---CcccccHHHhhccceeeccHHHHHHHHhcC-hHHHHHHH
Confidence 46667777766555444433455668888999999875 557788888888 77788887777777655 78888888
Q ss_pred HhhCc-chH-HHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHH
Q 000065 2105 LHYAP-ACR-EGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITL 2181 (2462)
Q Consensus 2105 L~~~p-~~~-~~~L~~L~aL~s-~t~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~aD~lhGPrV~~~L 2181 (2462)
+...| +.+ ..+.=++....+ +.+-++..+..|.+..|++++..+ ...+|-+||-+++-+++..- -..+....
T Consensus 330 l~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~----ef~~rKEAawaIsN~ts~g~-~~qi~yLv 404 (514)
T KOG0166|consen 330 LSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA----EFDIRKEAAWAISNLTSSGT-PEQIKYLV 404 (514)
T ss_pred hccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc----chHHHHHHHHHHHhhcccCC-HHHHHHHH
Confidence 87544 323 335556655554 667898999999999999999876 37889999999998887544 22344444
Q ss_pred HhhCcHHHHHHH
Q 000065 2182 ARFLPDGLVSVI 2193 (2462)
Q Consensus 2182 ~KfLP~~fvdam 2193 (2462)
..-.=+.|.+.+
T Consensus 405 ~~giI~plcdlL 416 (514)
T KOG0166|consen 405 EQGIIKPLCDLL 416 (514)
T ss_pred HcCCchhhhhcc
Confidence 443333344444
No 77
>cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.
Probab=93.99 E-value=0.074 Score=50.64 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=45.2
Q ss_pred ceeEeecCCCcccccccHHHHHHHHhcCCcCcCCceeccc-CcchhhhhhhH
Q 000065 1172 KEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASG-MLDWKKLRDIR 1222 (2462)
Q Consensus 1172 KEWyy~~~~g~~~GPvs~~eLk~l~~~g~I~~~T~~Wa~G-m~~W~~l~~ip 1222 (2462)
..|+|.+.+|+.+|||+..+|+.-+++|-.+++-.|+..| ...|.++.++-
T Consensus 2 ~~W~Y~d~~g~vqGPF~~~~M~~W~~~gyF~~~l~vr~~~~~~~f~~l~~~~ 53 (57)
T cd00072 2 VQWFYKDPQGEIQGPFSASQMLQWYQAGYFPDGLQVRRLDNGGEFYTLGDIL 53 (57)
T ss_pred cEEEEECCCCCCcCCcCHHHHHHHHHCCCCCCCeEEEECCCCCCcEEHHHHH
Confidence 4799999999999999999999999999999999999985 44598887763
No 78
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.75 E-value=1.3 Score=46.20 Aligned_cols=111 Identities=25% Similarity=0.279 Sum_probs=83.9
Q ss_pred cCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCC-hhHHHHHHhhcchHHHHHHHHhh-CcchHHHHHHHHHHhhcch-
Q 000065 2050 KEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTC-ASCLEAMVADGSSLLLLLQMLHY-APACREGVLHVLYALASTP- 2126 (2462)
Q Consensus 2050 ~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n-~~CVeaiA~~~~vl~~Ll~lL~~-~p~~~~~~L~~L~aL~s~t- 2126 (2462)
.+.+..+.++|... +..+...++..|..++.+ .+|...+... .++..++.+|.. .+..+..++.+|..++.+.
T Consensus 6 ~~~i~~l~~~l~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 6 AGGLPALVSLLSSS---DENVQREAAWALSNLSAGNNDNIQAVVEA-GGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred cCChHHHHHHHHcC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 34556667777543 457889999999888877 7777777764 478888888875 3556677899999999766
Q ss_pred HHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHh
Q 000065 2127 ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLV 2168 (2462)
Q Consensus 2127 ~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~ 2168 (2462)
.......+.|++.+|++++... ...+|..++.+|..+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~----~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS----NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC----CHHHHHHHHHHHHHhh
Confidence 4566677889999999988753 4678889998887764
No 79
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=0.18 Score=58.08 Aligned_cols=51 Identities=39% Similarity=0.707 Sum_probs=43.8
Q ss_pred HHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCC----------chHHHHHHHH
Q 000065 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP----------EGREKFLAVQ 1572 (2462)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp----------~a~ekF~~I~ 1572 (2462)
.++|++||+.. ..+..+||++||++...+|||+.- .+.+++++|+
T Consensus 113 ~~~l~~l~~~~-------------------------~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~ 167 (174)
T COG1076 113 EDALKVLGVEI-------------------------KADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQ 167 (174)
T ss_pred hhHHHHhcCch-------------------------hhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 78999999995 557889999999999999999952 2678999999
Q ss_pred HHHHHh
Q 000065 1573 KAYERL 1578 (2462)
Q Consensus 1573 ~AYEvL 1578 (2462)
+||+-+
T Consensus 168 ~a~~~~ 173 (174)
T COG1076 168 EAYEDI 173 (174)
T ss_pred HHHHhc
Confidence 999853
No 80
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=89.25 E-value=26 Score=46.28 Aligned_cols=291 Identities=17% Similarity=0.213 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHhhCccchhcccc-----cCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHH
Q 000065 2026 LQFGLTSLQNILTSNPNLASIFST-----KEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLL 2100 (2462)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s-----~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~ 2100 (2462)
++-++.-+.-+|+.+|.....+.. .....+++.+|.. ++.-|+..+..+|..+.....=-..-......+..
T Consensus 71 vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~---~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~ 147 (429)
T cd00256 71 VRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR---QDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNW 147 (429)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC---CchhHHHHHHHHHHHHHhcCccccchhHHHHHHHH
Confidence 344566677777888775544432 2334556666643 35678999999998776332100000000112223
Q ss_pred HHHHHhh--CcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHH--------------------
Q 000065 2101 LLQMLHY--APACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRA-------------------- 2158 (2462)
Q Consensus 2101 Ll~lL~~--~p~~~~~~L~~L~aL~s~t~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~-------------------- 2158 (2462)
|...+.. ..+....++++|..|...++......+.+|+..|.++|.+.. .+.|.--
T Consensus 148 l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~--~~~Ql~Y~~ll~lWlLSF~~~~~~~~~ 225 (429)
T cd00256 148 LKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNAT--LGFQLQYQSIFCIWLLTFNPHAAEVLK 225 (429)
T ss_pred HHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhcc--ccHHHHHHHHHHHHHHhccHHHHHhhc
Confidence 4444432 245566788999999988888877888889999999987632 1112111
Q ss_pred --HHHHHHHHHhcCCCCChH-HHH---HHHhhCcH--------HHHHHHhcCchhhHHHhhcccCcC-cccccC-HHHHH
Q 000065 2159 --AAASLLGKLVGQPMHGPR-VAI---TLARFLPD--------GLVSVIRDGPGEAVVSALEQTTET-PELVWT-PAMAA 2222 (2462)
Q Consensus 2159 --~aA~lL~km~aD~lhGPr-V~~---~L~KfLP~--------~fvdamrdsp~~a~v~~fes~~En-PELIWn-~~mR~ 2222 (2462)
.....|..+..+- .=.| ||. +|--++.. .+...|-+..--.+++.+...+=+ |||.=+ +...+
T Consensus 226 ~~~~i~~l~~i~k~s-~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e 304 (429)
T cd00256 226 RLSLIQDLSDILKES-TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTE 304 (429)
T ss_pred cccHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 1122222222110 0122 222 23333332 244455553333445556555543 444211 11233
Q ss_pred HHHHHHHHHH--HHHHHHHhcCCcccccCCccccccccCCCCcEEeeeeehhhccCCCCCCCChHHHHH---HHHHHHHH
Q 000065 2223 SLSAQISTMA--SDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLE---GLLDQYLS 2297 (2462)
Q Consensus 2223 ~v~~~i~~~~--~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL~---~Ll~~~~~ 2297 (2462)
.+.+.+.++. ++|.++-.. +..+|. |.+-. ++|=--|-.+|-+ +++.+.++
T Consensus 305 ~L~~~~k~ltsfD~Y~~El~s-g~L~WS-p~H~s----------------------e~FW~EN~~kf~~~~~~llk~L~~ 360 (429)
T cd00256 305 ELKNSVQDLSSFDEYKSELRS-GRLHWS-PVHKS----------------------EKFWRENADRLNEKNYELLKILIH 360 (429)
T ss_pred HHHHHHHHcCCHHHHHHHHhc-CCccCC-CCCCC----------------------chHHHHHHHHHHhcchHHHHHHHH
Confidence 3333333332 444444444 447887 44311 1111112333333 36777777
Q ss_pred HHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhc
Q 000065 2298 SIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEG 2352 (2462)
Q Consensus 2298 ~~~~~~~e~~~~d~~ll~llt~A~v~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~ 2352 (2462)
.+.+.+ |+..+....-=+-++.|++|.=-+.+-.+|.=.++.++|+|++
T Consensus 361 iL~~s~------d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d 409 (429)
T cd00256 361 LLETSV------DPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHED 409 (429)
T ss_pred HHhcCC------CcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCC
Confidence 775432 2222234455567899999999999999999999999999875
No 81
>smart00444 GYF Contains conserved Gly-Tyr-Phe residues. Proline-binding domain in CD2-binding protein. Contains conserved Gly-Tyr-Phe residues.
Probab=86.80 E-value=0.95 Score=43.15 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=42.6
Q ss_pred ceeEeecCCCcccccccHHHHHHHHhcCCcCcCCceecccCcchhhhhhh
Q 000065 1172 KEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKLRDI 1221 (2462)
Q Consensus 1172 KEWyy~~~~g~~~GPvs~~eLk~l~~~g~I~~~T~~Wa~Gm~~W~~l~~i 1221 (2462)
+.|+|.+.+|+.+||||..+|+.-+++|-.+++=.|+..+-+...++..+
T Consensus 1 ~~W~Y~d~~~~iqGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~~~l~~~ 50 (56)
T smart00444 1 VLWLYKDPDGEIQGPFTASQMSQWYQAGYFPDSLQIKRLNEPPYDTLGDL 50 (56)
T ss_pred CEEEEECCCCCEeCCcCHHHHHHHHHCCCCCCCeEEEEcCCCCCCcchhh
Confidence 36999999999999999999999999999999989988777766555443
No 82
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=86.08 E-value=9.1 Score=51.44 Aligned_cols=119 Identities=21% Similarity=0.217 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhhCccchhcccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhc-CChhHHHHHHhhcchHHHHHHH
Q 000065 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLT-TCASCLEAMVADGSSLLLLLQM 2104 (2462)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls-~n~~CVeaiA~~~~vl~~Ll~l 2104 (2462)
-..|.++|.++.++.++++..+.+.. +..|-.++... ++.++..+++++..++ .+.+..+.+.. ..++..++..
T Consensus 136 a~~A~~~L~~l~~~~~~~~~l~~~~~-~~~L~~l~~~~---~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~e 210 (503)
T PF10508_consen 136 AKAAIKALKKLASHPEGLEQLFDSNL-LSKLKSLMSQS---SDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKE 210 (503)
T ss_pred HHHHHHHHHHHhCCchhHHHHhCcch-HHHHHHHHhcc---CHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHH
Confidence 56789999999999999887666554 66677777542 4567888999887665 55555555554 4488888888
Q ss_pred HhhCcch--HHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCC
Q 000065 2105 LHYAPAC--REGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQ 2150 (2462)
Q Consensus 2105 L~~~p~~--~~~~L~~L~aL~s~t~lvkqal~~GgvlyLL~LL~~~~e 2150 (2462)
+.. .|. ...++++|..|+.++.-.+...+.|.+.-|.+++.+..+
T Consensus 211 L~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 211 LDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred hcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcccc
Confidence 876 554 345999999999988888888888888888888887643
No 83
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=85.85 E-value=7.2 Score=52.36 Aligned_cols=139 Identities=24% Similarity=0.323 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHhhCccchhcccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHh
Q 000065 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLH 2106 (2462)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~ 2106 (2462)
.+++.++.++++++.+....+...+-++.+..|+..+ +..+.+.|..+|..++.+..-.+.+.... .+..|..++.
T Consensus 95 ~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~---d~~Va~~A~~~L~~l~~~~~~~~~l~~~~-~~~~L~~l~~ 170 (503)
T PF10508_consen 95 RLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP---DLSVAKAAIKALKKLASHPEGLEQLFDSN-LLSKLKSLMS 170 (503)
T ss_pred HHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC---cHHHHHHHHHHHHHHhCCchhHHHHhCcc-hHHHHHHHHh
Confidence 4578889999999888777788888888888999764 56899999999999998887776665433 4667777776
Q ss_pred h-CcchHHHHHHHHHHhhcc-hHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCC
Q 000065 2107 Y-APACREGVLHVLYALAST-PELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHG 2174 (2462)
Q Consensus 2107 ~-~p~~~~~~L~~L~aL~s~-t~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~aD~lhG 2174 (2462)
. ....+--+++++-.+++. ++........|.+..+++.|.+. ..=.|.-+.++|..|.. .-||
T Consensus 171 ~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d----DiLvqlnalell~~La~-~~~g 235 (503)
T PF10508_consen 171 QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD----DILVQLNALELLSELAE-TPHG 235 (503)
T ss_pred ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc----cHHHHHHHHHHHHHHHc-ChhH
Confidence 5 334455688998888875 45555556678777888877652 45678899999999988 5566
No 84
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=85.64 E-value=13 Score=38.62 Aligned_cols=93 Identities=17% Similarity=0.135 Sum_probs=67.6
Q ss_pred hHHHHHHHHhh-CcchHHHHHHHHHHhhcc-hHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCC
Q 000065 2097 SLLLLLQMLHY-APACREGVLHVLYALAST-PELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHG 2174 (2462)
Q Consensus 2097 vl~~Ll~lL~~-~p~~~~~~L~~L~aL~s~-t~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~aD~lhG 2174 (2462)
++..|+.+|.. .++.+..++.+|..++.. ++.....++.|++..++++|.+. ++.+|..++.+|..+..+ +
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~----~~~v~~~a~~~L~~l~~~---~ 80 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE----DEEVVKAALWALRNLAAG---P 80 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC----CHHHHHHHHHHHHHHccC---c
Confidence 56667766653 346677788899999876 77888888889999999999753 678999999999999764 3
Q ss_pred hHHHHHHH-hhCcHHHHHHHhcC
Q 000065 2175 PRVAITLA-RFLPDGLVSVIRDG 2196 (2462)
Q Consensus 2175 PrV~~~L~-KfLP~~fvdamrds 2196 (2462)
|.....+. .=+.+.++..|.+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSS 103 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcC
Confidence 33333333 33556666666554
No 85
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=85.52 E-value=1.9 Score=47.66 Aligned_cols=57 Identities=25% Similarity=0.361 Sum_probs=39.5
Q ss_pred CCchHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHh
Q 000065 1499 DLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERL 1578 (2462)
Q Consensus 1499 ~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvL 1578 (2462)
.|+.+||++||||+. ..+.++|.+.|.+|-...+|+|++. ---=.+|..|.|+|
T Consensus 54 ~Mtl~EA~~ILnv~~-------------------------~~~~eeI~k~y~~Lf~~Nd~~kGGS-fYLQSKV~rAKErl 107 (127)
T PF03656_consen 54 GMTLDEARQILNVKE-------------------------ELSREEIQKRYKHLFKANDPSKGGS-FYLQSKVFRAKERL 107 (127)
T ss_dssp ---HHHHHHHHT--G---------------------------SHHHHHHHHHHHHHHT-CCCTS--HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCC-------------------------ccCHHHHHHHHHHHHhccCCCcCCC-HHHHHHHHHHHHHH
Confidence 589999999999994 5688999999999999999998753 22223678888888
Q ss_pred hcc
Q 000065 1579 QAT 1581 (2462)
Q Consensus 1579 sd~ 1581 (2462)
-.+
T Consensus 108 ~~E 110 (127)
T PF03656_consen 108 EQE 110 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 86
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=85.27 E-value=13 Score=45.92 Aligned_cols=170 Identities=19% Similarity=0.255 Sum_probs=113.9
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhcHHHHHHhCCchHHHHHHHhhhhcccCCccccccchhhcccccCCccee
Q 000065 1095 AHITVLLDRTDDRALRHRLLLLLKVLMKVLANIEACVLVGGCVLAVDLLTVVHETSERTAIPLQSNLLAATAFMEPFKEW 1174 (2462)
Q Consensus 1095 ~y~~~Ll~~t~d~~~R~~lll~~~~L~~~~~N~~~~v~~~G~~llvdLltlah~~~~~~~~~~q~n~i~a~~~~~~~KEW 1174 (2462)
.-++.+|+.+.|+..+...+..+......+.|=+.+-+.||+.++.+++.--+..+ +..++.|-+.+.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~v-------r~~AL~aL~Nls----- 82 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSV-------REKALNALNNLS----- 82 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHH-------HHHHHHHHHhcC-----
Confidence 45889999999999999999888888888999999999999999999995432222 222333222221
Q ss_pred EeecCCCcccccccHHHHHHHHhcCCcCcCCceecccCcchhhhhhhHHH-HHHHhhcCCcCChhhHHHHHHHHHHHHhc
Q 000065 1175 MFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKLRDIREL-RWALAVRVPVLTPTQVGEAALAILHNMVS 1253 (2462)
Q Consensus 1175 yy~~~~g~~~GPvs~~eLk~l~~~g~I~~~T~~Wa~Gm~~W~~l~~ipqL-rW~la~g~~vl~~~~l~~~~L~iL~~~~~ 1253 (2462)
.+.+.+ ..++. -|+++ ++++.. +.-++.| ...|++|..|+-
T Consensus 83 ----~~~en~-----~~Ik~-------------------------~i~~Vc~~~~s~--~lns~~Q--~agLrlL~nLtv 124 (254)
T PF04826_consen 83 ----VNDENQ-----EQIKM-------------------------YIPQVCEETVSS--PLNSEVQ--LAGLRLLTNLTV 124 (254)
T ss_pred ----CChhhH-----HHHHH-------------------------HHHHHHHHHhcC--CCCCHHH--HHHHHHHHccCC
Confidence 000000 11111 13343 333321 2334445 458999999864
Q ss_pred cccCCCCCCCccccCcchhhhccCCCchHHHHHhhhcCCchHHHHHHHHHHHHHhhChHHHHHHHhhhHH-hhhhhcCC
Q 000065 1254 AHSDLDDAGEIVTPTPRVKWILSSSRCLPHIAQAMLSGEPSIVEAAAALLKAVVTRNPKAMIRLYSTGAF-YFALAYPG 1331 (2462)
Q Consensus 1254 ~~p~~d~~g~~i~P~Prvkr~Ls~~~~LphlvQlLLt~~p~lve~~~~LL~~l~~~n~~~~~~Ly~tG~f-~f~L~y~g 1331 (2462)
+.+ ...++. .++|+++++|.+++..+=..++.+|..+.. ||.....|..+.+. -|+.++..
T Consensus 125 -----~~~---------~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~ 186 (254)
T PF04826_consen 125 -----TND---------YHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNS 186 (254)
T ss_pred -----Ccc---------hhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHcc
Confidence 222 123443 379999999999999999999999999877 99888999999986 34445543
No 87
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=83.97 E-value=0.97 Score=59.43 Aligned_cols=40 Identities=28% Similarity=0.527 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCc----------hHHHHHHHHHHHHHh
Q 000065 1539 NIDEEKLKRQYRKLAMKYHPDKNPE----------GREKFLAVQKAYERL 1578 (2462)
Q Consensus 1539 ~a~e~~IKkAYRkLa~k~HPDKnp~----------a~ekF~~I~~AYEvL 1578 (2462)
-.+...+||+|||.++.-||||-++ +++-|-.+++|++.-
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 3577899999999999999999864 345566666666543
No 88
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=83.50 E-value=5.3 Score=47.22 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=74.5
Q ss_pred CCCCcceEEEEeccceeeee------cCCccceEEeeeccceeEEeecCCCCceEEEEecCCccceeeccCchhHHHHHH
Q 000065 292 EHGGAVSRQLILTRVSLVER------RPDNYEAVIVRPLSAVSSLVRFAEEPQMFAIEFNDGCPIHVYASTSRDSLLAAV 365 (2462)
Q Consensus 292 ~~~~~v~R~L~Lt~~~lvER------dp~tY~vv~~rpL~~i~aLVR~~~dpQ~f~IEf~dG~~~r~Y~s~~RD~LLAsl 365 (2462)
+++-+.+|.|+||+..|-=- ++.+|.+=-.-||++|.++.-+.-.++.|.|--.+.- =-++.++.+--+++.|
T Consensus 61 r~~K~~~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l~~I~~IsvS~~~D~~~vihv~~~~-D~il~~~~k~Elv~~L 139 (199)
T PF06017_consen 61 RRNKPQPRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPLSDITGISVSPLSDNFFVIHVPGEG-DLILESDFKTELVTIL 139 (199)
T ss_pred CCCCccceEEEEeCCeEEEEEEeecCCceeeEEEeccCcccccEEEEccCCCCEEEEEECCCC-CEEEEeCcHHHHHHHH
Confidence 36679999999999955444 6778888888899999999999999999999985432 3567778889999999
Q ss_pred HHHHHhhCCCCeeeecc
Q 000065 366 RDVLQTEGHYPVPVLPR 382 (2462)
Q Consensus 366 lD~~ra~Gn~~V~V~~~ 382 (2462)
.+.++...+++++|.-+
T Consensus 140 ~~~~~~~~~~~l~v~~~ 156 (199)
T PF06017_consen 140 CKAYKKATGKKLPVNFS 156 (199)
T ss_pred HHHHHHHhCCceeEEEe
Confidence 99999998888877533
No 89
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=82.24 E-value=2.6 Score=48.42 Aligned_cols=88 Identities=20% Similarity=0.181 Sum_probs=69.8
Q ss_pred chhhHHHhcCHHHHHHHHHHhhhcccCCCCCCCccceeehhhhhhhhhhccChHHHHHHHhhcchHHHHHHhhccccchh
Q 000065 1661 NGEELVRDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCTELELVPG 1740 (2462)
Q Consensus 1661 NaeeL~re~G~~~L~~~l~rC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l~l~~~~~ 1740 (2462)
-.+++...||+..|.+++.++..--... +....+...++|||........+++.+...+..+.-|+.|+.-.+ +.
T Consensus 99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~----~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~-~~ 173 (187)
T PF06371_consen 99 WVQEFLELGGLEALLNVLSKLNKKKEKS----EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPN-IK 173 (187)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTHHCTC----TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTS-HH
T ss_pred HHHHhccCCCHHHHHHHHHHhhhhhhhc----chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCC-HH
Confidence 3678888999999999999886543322 344556678999999999999999999999999999999987544 57
Q ss_pred HHHHHHHHHHHhh
Q 000065 1741 AVDAALQTIAHVS 1753 (2462)
Q Consensus 1741 l~~aALe~v~~~a 1753 (2462)
+...|+|++..+|
T Consensus 174 ~r~~~leiL~~lc 186 (187)
T PF06371_consen 174 TRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8889999999886
No 90
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=80.15 E-value=9.9 Score=46.80 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhhCccchhcccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHh
Q 000065 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLH 2106 (2462)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~ 2106 (2462)
+.++.||.|+=.+ .+.+-.-..++..+++-.... +.++.+|..+|++|..||.....-.-++. .++.++.+|.
T Consensus 72 ~~AL~aL~Nls~~---~en~~~Ik~~i~~Vc~~~~s~-~lns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~ 144 (254)
T PF04826_consen 72 EKALNALNNLSVN---DENQEQIKMYIPQVCEETVSS-PLNSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLS 144 (254)
T ss_pred HHHHHHHHhcCCC---hhhHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHH
Confidence 3456666655222 222211233566666654332 34678999999999999977777666654 4567777776
Q ss_pred hC-cchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHH-HHHhh
Q 000065 2107 YA-PACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAI-TLARF 2184 (2462)
Q Consensus 2107 ~~-p~~~~~~L~~L~aL~s~t~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~aD~lhGPrV~~-~L~Kf 2184 (2462)
.. .....-+|.+|..|+.++.++++.+.++++.-++.+|..++ +.+.-..+..++..+... ..+.... +-.+|
T Consensus 145 ~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~---~~~~l~~~l~~~~ni~~~--~~~~~~~~~~~~~ 219 (254)
T PF04826_consen 145 SGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSE---SKENLLRVLTFFENINEN--IKKEAYVFVQDDF 219 (254)
T ss_pred cCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCC---ccHHHHHHHHHHHHHHHh--hCcccceeccccC
Confidence 53 23344599999999999999999999999999999998653 223333333334333322 1122111 22455
Q ss_pred CcHHHHHHHhcCc
Q 000065 2185 LPDGLVSVIRDGP 2197 (2462)
Q Consensus 2185 LP~~fvdamrdsp 2197 (2462)
=...+...++++.
T Consensus 220 ~~~~L~~~~~e~~ 232 (254)
T PF04826_consen 220 SEDSLFSLFGESS 232 (254)
T ss_pred CchhHHHHHccHH
Confidence 5566666666664
No 91
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.14 E-value=16 Score=46.46 Aligned_cols=123 Identities=18% Similarity=0.174 Sum_probs=90.6
Q ss_pred cchhcccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhhCc-chH-HHHHHHH
Q 000065 2042 NLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHYAP-ACR-EGVLHVL 2119 (2462)
Q Consensus 2042 ~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~~p-~~~-~~~L~~L 2119 (2462)
+.+.-+.++|.+.++..++.. ++..++..|..||...++|++-++.-.-+...+..|+..+.+.. ... ..+|-.+
T Consensus 115 DnAndl~~~ggl~~ll~~l~~---~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~Ai 191 (342)
T KOG2160|consen 115 DNANDLISLGGLVPLLGYLEN---SDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAI 191 (342)
T ss_pred hhHHhHhhccCHHHHHHHhcC---CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHH
Confidence 445557778888888887765 36789999999998888888877776666668888998887543 222 3466666
Q ss_pred HHhhc-chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhc
Q 000065 2120 YALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVG 2169 (2462)
Q Consensus 2120 ~aL~s-~t~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~a 2169 (2462)
++|.. +.....+.++-+|+.-|-+++... ......+..++.+++.+..
T Consensus 192 ssLIRn~~~g~~~fl~~~G~~~L~~vl~~~--~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 192 SSLIRNNKPGQDEFLKLNGYQVLRDVLQSN--NTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHHHhcCcHHHHHHHhcCCHHHHHHHHHcC--CcchHHHHHHHHHHHHHHH
Confidence 66664 556778889999999999999763 2356667778888877754
No 92
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=74.48 E-value=29 Score=45.20 Aligned_cols=164 Identities=15% Similarity=0.124 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhhhhc-HHHHHHhCCchHHHHHHHhh-hhcccCCccccccchhhcccccCCcceeEeecCCCcccccccH
Q 000065 1112 RLLLLLKVLMKVLAN-IEACVLVGGCVLAVDLLTVV-HETSERTAIPLQSNLLAATAFMEPFKEWMFIDKDGAQVGPVEK 1189 (2462)
Q Consensus 1112 ~lll~~~~L~~~~~N-~~~~v~~~G~~llvdLltla-h~~~~~~~~~~q~n~i~a~~~~~~~KEWyy~~~~g~~~GPvs~ 1189 (2462)
+.+.+++.++....+ ...|.+.+|+.+++|.+..= +...+. ...+|+
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~-----------------~~~~~~-------------- 51 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE-----------------NKNEEA-------------- 51 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----------------ccccCC--------------
Confidence 467788888866555 77899999999999998521 111110 000000
Q ss_pred HHHHHHHhcCCcCcCCceecccCc-chhhhhhhHHHHHHHhhcCCcCChhhHHHHHHHHHHHHhccccCCCCCCCccccC
Q 000065 1190 DAIRRFWSKKAIDWTTRCWASGML-DWKKLRDIRELRWALAVRVPVLTPTQVGEAALAILHNMVSAHSDLDDAGEIVTPT 1268 (2462)
Q Consensus 1190 ~eLk~l~~~g~I~~~T~~Wa~Gm~-~W~~l~~ipqLrW~la~g~~vl~~~~l~~~~L~iL~~~~~~~p~~d~~g~~i~P~ 1268 (2462)
.+.+.+++ ..+..+ .|-+..+..-|||.+ +.++.++.+.+. .+..+
T Consensus 52 --------~~~~~~~~--~~~~~~~~~i~~~r~~llK~lL-----------------k~l~~~~~~~~~---~~~~l--- 98 (379)
T PF06025_consen 52 --------GSGIPPEY--KESSVDGYSISYQRQQLLKSLL-----------------KFLSHAMQHSGG---FGDRL--- 98 (379)
T ss_pred --------CCCCCCCc--ccccccccccCHHHHHHHHHHH-----------------HHHHHHhccCCC---ccccc---
Confidence 01111111 112223 455666666677655 445554542111 11122
Q ss_pred cchhhhccC----CCchHHHHHhhhcCCchHHHHHHHHHHHHHhhChHHHHHHHhhhHHhhhhh-cCCCChhhHHHHhhh
Q 000065 1269 PRVKWILSS----SRCLPHIAQAMLSGEPSIVEAAAALLKAVVTRNPKAMIRLYSTGAFYFALA-YPGSNLYSIAQLFSV 1343 (2462)
Q Consensus 1269 Prvkr~Ls~----~~~LphlvQlLLt~~p~lve~~~~LL~~l~~~n~~~~~~Ly~tG~f~f~L~-y~gsn~~~ia~lL~~ 1343 (2462)
|-|-+ +.+|-+|.+---.|-|.++--+++++..++.+-|...+-|...|+...+|- ++...++|..+.|..
T Consensus 99 ----rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~ 174 (379)
T PF06025_consen 99 ----RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS 174 (379)
T ss_pred ----ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence 33444 567888888888999999999999999999988999999999999998884 454667777776655
No 93
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=74.02 E-value=11 Score=41.50 Aligned_cols=79 Identities=10% Similarity=0.111 Sum_probs=56.3
Q ss_pred cCCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCC-CccccccCCCCChH
Q 000065 134 RNSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGR-KSKAFQAAPGTTNS 212 (2462)
Q Consensus 134 ~k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~~gfvl~~~~g~-~~r~~l~~~~~~~~ 212 (2462)
.++.|.++.|.|++.||..+||.++.+++.++-+.|. +. .+ |+.. -.|+..--.|. .-.-|+|.|+..-.
T Consensus 35 ~~~~~~~v~l~Vs~~~l~l~d~~t~~~l~~~~i~~Is---f~--~~--gk~~--r~FafI~~~~~~~~~CHVF~c~~~a~ 105 (123)
T cd01216 35 NWEDWKDLNMDLAPSTLSLIDPDNLTVLHECRVRYLS---FW--GV--GRDV--RDFAFIMRTERRRFMCHVFRCEPNAG 105 (123)
T ss_pred ccccCeEEEEEEecCcEEEEcCCCCeEEEEEEeeEEE---EE--Ec--CCCC--cEEEEEEEcCCCeEEEEEEEcCCCHH
Confidence 3788999999999999999999999999999988885 44 22 1111 44543212332 22278898987777
Q ss_pred HHHHHHHHH
Q 000065 213 AIVSSLTKT 221 (2462)
Q Consensus 213 ~ii~~i~~~ 221 (2462)
+|-+.|.++
T Consensus 106 ~i~~tv~~a 114 (123)
T cd01216 106 ALATTVEAA 114 (123)
T ss_pred HHHHHHHHH
Confidence 787777654
No 94
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=73.60 E-value=6.5 Score=46.50 Aligned_cols=86 Identities=24% Similarity=0.340 Sum_probs=67.7
Q ss_pred cEEEEEEEeeccccc-ccEEEEEecCeeeee------CCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCC
Q 000065 21 YLARYLVVKHSWRGR-YKRILCISNATIITL------DPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRG 93 (2462)
Q Consensus 21 ~~a~y~vtKhSWrgk-YkRIf~Ig~~~i~T~------nP~tl~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~ 93 (2462)
.-|+. |+|..=++| =+|+|.|++.+|.-+ ++.+..+--+=++ +++.+|+.+ +.+-+-|+|+++.
T Consensus 51 lFs~~-v~K~nr~~K~~~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l-~~I~~IsvS---~~~D~~~vihv~~---- 121 (199)
T PF06017_consen 51 LFSDR-VQKYNRRNKPQPRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPL-SDITGISVS---PLSDNFFVIHVPG---- 121 (199)
T ss_pred EEEEE-EEEecCCCCccceEEEEeCCeEEEEEEeecCCceeeEEEeccCc-ccccEEEEc---cCCCCEEEEEECC----
Confidence 33444 899554544 579999999999999 7888999999999 799998874 3334568999944
Q ss_pred cccceeeehhhhhHHHHHHHHhh
Q 000065 94 KFKAFKFSSRFRASILTELHRIR 116 (2462)
Q Consensus 94 K~~~mkFss~~Ra~lLT~l~r~r 116 (2462)
+ ..+-|+|.++.|++|-|....
T Consensus 122 ~-~D~il~~~~k~Elv~~L~~~~ 143 (199)
T PF06017_consen 122 E-GDLILESDFKTELVTILCKAY 143 (199)
T ss_pred C-CCEEEEeCcHHHHHHHHHHHH
Confidence 3 347899999999999998765
No 95
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.54 E-value=82 Score=40.10 Aligned_cols=73 Identities=26% Similarity=0.282 Sum_probs=51.7
Q ss_pred HHHHHHHHh--hCcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000065 2098 LLLLLQMLH--YAPACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2462)
Q Consensus 2098 l~~Ll~lL~--~~p~~~~~~L~~L~aL~s~t~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~aD 2170 (2462)
+..|..++. ..|+.+...+-+|.+|+-+.++-+.....||+--|+.++.++++..+...--.+.++|.++...
T Consensus 243 l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~ 317 (461)
T KOG4199|consen 243 LTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS 317 (461)
T ss_pred HHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC
Confidence 333444443 2466666677888888889999999999999999999998765433322334567888888753
No 96
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=69.51 E-value=44 Score=39.76 Aligned_cols=201 Identities=18% Similarity=0.188 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHhcHHh---hHhhhc-chhhhhhHHhhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhhhh
Q 000065 498 TVMGFVACLRRLLTSRTA---ASHVMS-FPAAVGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHATM 573 (2462)
Q Consensus 498 ~~~~~~~aLrRL~as~~g---f~~~~~-~p~~~~~v~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~~~ 573 (2462)
+-+..+..||+++..... ...|.. +...+..|.+.+....-.|+..|+.++..|...... ..+.
T Consensus 23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~--------~~~~---- 90 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS--------HFEP---- 90 (228)
T ss_dssp HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG--------GGHH----
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH--------hHHH----
Confidence 445678888888887711 122211 112223577788888888999999999998752111 1111
Q ss_pred cccchhcccchhhHHHHHHhhcCCCChhHHHHHHHHHHHhhccCCCCCCCChHHHHHHHHHHHhhhhHHHHhhCCCchhH
Q 000065 574 MHTKSVLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMICEPHSETTQYTVFVELLRQVAGLRRRLFALFGHPAESV 653 (2462)
Q Consensus 574 ~~nKs~ll~~~~~~~~L~~~l~~~~~~alv~~a~l~~l~~~lC~P~seTT~~~~f~~ll~~va~~gr~lf~Lf~hp~~~i 653 (2462)
.-..++..|++++.+. ...+..+.-+.+..++.. . .+. ..+ ....+...+.|.+..+
T Consensus 91 --------~~~~~l~~Ll~~~~~~--~~~i~~~a~~~L~~i~~~--~---~~~--~~~------~~~~l~~~~~~Kn~~v 147 (228)
T PF12348_consen 91 --------YADILLPPLLKKLGDS--KKFIREAANNALDAIIES--C---SYS--PKI------LLEILSQGLKSKNPQV 147 (228)
T ss_dssp --------HHHHHHHHHHHGGG-----HHHHHHHHHHHHHHHTT--S----H----HH------HHHHHHHHTT-S-HHH
T ss_pred --------HHHHHHHHHHHHHccc--cHHHHHHHHHHHHHHHHH--C---CcH--HHH------HHHHHHHHHhCCCHHH
Confidence 1234567777777763 456777777777776632 1 100 011 1344567889999999
Q ss_pred HhHHHHHHHHHHhhcHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChhHHhhhhhcCchhHhhh
Q 000065 654 RETVAVIMRTIAEEDAIAAESMRDAALRDGALLRHLLHAFFLPAGERREVSRQLVALWADSYQPALDLLSRVLPPGLVAY 733 (2462)
Q Consensus 654 ~~~aglimrai~Ee~~~~a~~mq~~AL~eGall~HL~~A~f~~~~~~r~lsr~LV~lW~~~~~~a~~LL~RilP~gLl~y 733 (2462)
+..+...+..+++.-..-...++.-. .=..+..-+...+-++..+-|+-+|.++..+....+..-+-+-..+||..=.+
T Consensus 148 R~~~~~~l~~~l~~~~~~~~~l~~~~-~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk~ 226 (228)
T PF12348_consen 148 REECAEWLAIILEKWGSDSSVLQKSA-FLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNIQKY 226 (228)
T ss_dssp HHHHHHHHHHHHTT-----GGG--HH-HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH--------------
T ss_pred HHHHHHHHHHHHHHccchHhhhcccc-hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhccccc
Confidence 99999999999888331111121111 00335555666666677778999999988886666555554446666655444
Q ss_pred c
Q 000065 734 L 734 (2462)
Q Consensus 734 L 734 (2462)
|
T Consensus 227 l 227 (228)
T PF12348_consen 227 L 227 (228)
T ss_dssp -
T ss_pred C
Confidence 4
No 97
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=69.28 E-value=15 Score=39.30 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=52.2
Q ss_pred CCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCC--CccccccCCCCChH
Q 000065 135 NSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGR--KSKAFQAAPGTTNS 212 (2462)
Q Consensus 135 k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~~gfvl~~~~g~--~~r~~l~~~~~~~~ 212 (2462)
+.+|.++.|.|++.||..+|+.+++++..|+.++|. +...-+. ++.=|++.--..+ ...-|+|.|...-+
T Consensus 38 ~~~~~~v~l~vs~~gv~l~d~~~~~~l~~~~l~~Is---~~~~~~~-----~~~~F~~i~~~~~~~~~~CHvF~c~~~a~ 109 (123)
T cd00934 38 GEKGQKVILSVSSDGVKLIDPKTKEVLASHPIRRIS---FCAADPD-----DLRIFAFIAREPGSSRFECHVFKCEKVAE 109 (123)
T ss_pred ccCCCEEEEEEEcCcEEEEeCCCCcEEEeeccceEE---EEECCCC-----CCcEEEEEEEcCCCCcEEEEEEEeCchHH
Confidence 456679999999999999999999999999988885 4322221 2455554312222 33478888863325
Q ss_pred HHHHHHHH
Q 000065 213 AIVSSLTK 220 (2462)
Q Consensus 213 ~ii~~i~~ 220 (2462)
+|...|.+
T Consensus 110 ~i~~~l~~ 117 (123)
T cd00934 110 PIALTLGQ 117 (123)
T ss_pred HHHHHHHH
Confidence 56666643
No 98
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.99 E-value=22 Score=46.20 Aligned_cols=127 Identities=22% Similarity=0.331 Sum_probs=87.0
Q ss_pred HHHhhCccchhcccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcC------C----hhHHHHHHhhcchHHHHHHH
Q 000065 2035 NILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT------C----ASCLEAMVADGSSLLLLLQM 2104 (2462)
Q Consensus 2035 nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~------n----~~CVeaiA~~~~vl~~Ll~l 2104 (2462)
+++...|.+--.+.-...+.-|.++|++. +..|....++.+..||. + ..-++++.. +.++.+|.+.
T Consensus 109 hvlAt~PdLYp~lveln~V~slL~LLgHe---NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~vlaLLvqn 184 (536)
T KOG2734|consen 109 HVLATMPDLYPILVELNAVQSLLELLGHE---NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQVLALLVQN 184 (536)
T ss_pred HhhhcChHHHHHHHHhccHHHHHHHhcCC---CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh-ccHHHHHHHH
Confidence 45556777665555555667788889876 67899999999999992 2 245666765 5688999998
Q ss_pred HhhCcch-------HHHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhcCC-CCCCcHHHHHHHHHHHHHHh
Q 000065 2105 LHYAPAC-------REGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPS-QQETPLQQRAAAASLLGKLV 2168 (2462)
Q Consensus 2105 L~~~p~~-------~~~~L~~L~aL~s-~t~lvkqal~~GgvlyLL~LL~~~-~e~~~~~~R~~aA~lL~km~ 2168 (2462)
+.+.-+. +.-+|.++-.|.+ .+++..++.++|.+.|||.-+|.. ..+.+.+. |.++|+=+.
T Consensus 185 veRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~Y---asEiLaill 254 (536)
T KOG2734|consen 185 VERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQY---ASEILAILL 254 (536)
T ss_pred HHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHH---HHHHHHHHh
Confidence 8864322 2336666666666 678899999999999999965543 33334444 455554444
No 99
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.99 E-value=40 Score=42.67 Aligned_cols=131 Identities=20% Similarity=0.224 Sum_probs=94.8
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhcHHHHHHhCCchHHHHHHHhhhhcccCCccccccchhhcccccCCcceeEe
Q 000065 1097 ITVLLDRTDDRALRHRLLLLLKVLMKVLANIEACVLVGGCVLAVDLLTVVHETSERTAIPLQSNLLAATAFMEPFKEWMF 1176 (2462)
Q Consensus 1097 ~~~Ll~~t~d~~~R~~lll~~~~L~~~~~N~~~~v~~~G~~llvdLltlah~~~~~~~~~~q~n~i~a~~~~~~~KEWyy 1176 (2462)
++..|.--.||-.-..+...+.+|--...=.+.+.+.||+..|+.++.-+-++-
T Consensus 246 L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~-------------------------- 299 (461)
T KOG4199|consen 246 LTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQG-------------------------- 299 (461)
T ss_pred HHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhh--------------------------
Confidence 444455556665555566666666555556788899999999999983222111
Q ss_pred ecCCCcccccccHHHHHHHHhcCCcCcCCceecccCcchhhhhhhHHHHHHHhhcCCcCChhhHHHHHHHHHHHHhcccc
Q 000065 1177 IDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKLRDIRELRWALAVRVPVLTPTQVGEAALAILHNMVSAHS 1256 (2462)
Q Consensus 1177 ~~~~g~~~GPvs~~eLk~l~~~g~I~~~T~~Wa~Gm~~W~~l~~ipqLrW~la~g~~vl~~~~l~~~~L~iL~~~~~~~p 1256 (2462)
+| .++..||+.|..+.-.
T Consensus 300 ---------------~r---------------------------------------------~l~k~~lslLralAG~-- 317 (461)
T KOG4199|consen 300 ---------------NR---------------------------------------------TLAKTCLSLLRALAGS-- 317 (461)
T ss_pred ---------------HH---------------------------------------------HHHHHHHHHHHHHhCC--
Confidence 11 3445688888887651
Q ss_pred CCCCCCCccccCcchhhhccCCCchHHHHHhhhcC--CchHHHHHHHHHHHHHhhChHHHHHHHhhhHHhhhh
Q 000065 1257 DLDDAGEIVTPTPRVKWILSSSRCLPHIAQAMLSG--EPSIVEAAAALLKAVVTRNPKAMIRLYSTGAFYFAL 1327 (2462)
Q Consensus 1257 ~~d~~g~~i~P~Prvkr~Ls~~~~LphlvQlLLt~--~p~lve~~~~LL~~l~~~n~~~~~~Ly~tG~f~f~L 1327 (2462)
| .+|..+-+.+-++.|+|+++++ +|-+++.++-.+..|.-+.|+--.+.+.+|+--.++
T Consensus 318 --D----------svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~av 378 (461)
T KOG4199|consen 318 --D----------SVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAV 378 (461)
T ss_pred --C----------chHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHH
Confidence 2 3678888899999999999986 677999999999999999999677778888766655
No 100
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=68.98 E-value=16 Score=39.95 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=52.6
Q ss_pred CCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCC--CccccccCCCCChH
Q 000065 135 NSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGR--KSKAFQAAPGTTNS 212 (2462)
Q Consensus 135 k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~~gfvl~~~~g~--~~r~~l~~~~~~~~ 212 (2462)
+..|.++.|.|++.||-.+|..+++++..|+.++|. +...-+. ++.-|++.--.++ ...-|+|.|+..-+
T Consensus 40 ~~~~~~v~l~vs~~gv~v~~~~~~~~l~~~~l~~Is---f~~~~~~-----~~~~F~fI~~~~~~~~~~CHvF~c~~~a~ 111 (134)
T smart00462 40 KKEPQKVILSISSRGVKLIDEDTKAVLHEHPLRRIS---FCAVGPD-----DLDVFGYIARDPGSSRFACHVFRCEKAAE 111 (134)
T ss_pred cCCCCEEEEEEECCcEEEEECCCCeEEEEccccceE---EEecCCC-----CCcEEEEEeeCCCCCeEEEEEEEcCchHH
Confidence 567789999999999999999999999999999995 4322211 2455554312222 35578888863333
Q ss_pred HHHHHHHH
Q 000065 213 AIVSSLTK 220 (2462)
Q Consensus 213 ~ii~~i~~ 220 (2462)
+|...|.+
T Consensus 112 ~i~~~i~~ 119 (134)
T smart00462 112 DIALAIGQ 119 (134)
T ss_pred HHHHHHHH
Confidence 45555543
No 101
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=67.50 E-value=5.4 Score=35.08 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=35.4
Q ss_pred cchhhhccCCCchHHHHHhhhcCCchHHHHHHHHHHHHH
Q 000065 1269 PRVKWILSSSRCLPHIAQAMLSGEPSIVEAAAALLKAVV 1307 (2462)
Q Consensus 1269 Prvkr~Ls~~~~LphlvQlLLt~~p~lve~~~~LL~~l~ 1307 (2462)
|..|+.+.+...+|+|+++|-+.++.+.+.++..|..|.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456788899999999999999999999999999998874
No 102
>PF05536 Neurochondrin: Neurochondrin
Probab=67.29 E-value=52 Score=44.90 Aligned_cols=94 Identities=27% Similarity=0.305 Sum_probs=71.7
Q ss_pred CChhhHHHHHHHHhcCChhHHHHHHhhc---chHHHHHHHHhhCc--chHHHHHHHHHHhhcchHHHHHHHHcCCHhhhH
Q 000065 2068 SNIPQLCLNVLSLLTTCASCLEAMVADG---SSLLLLLQMLHYAP--ACREGVLHVLYALASTPELAWAAAKHGGVVYIL 2142 (2462)
Q Consensus 2068 ~~vq~~aL~VL~~ls~n~~CVeaiA~~~---~vl~~Ll~lL~~~p--~~~~~~L~~L~aL~s~t~lvkqal~~GgvlyLL 2142 (2462)
......++.||+.++. .+.++... ..++.|+.++.... +....++++|++++++++-.+..++.|++.-|.
T Consensus 71 ~~~~~LavsvL~~f~~----~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ 146 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCR----DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALC 146 (543)
T ss_pred HHHHHHHHHHHHHHcC----ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHH
Confidence 4467899999999987 44565544 34677777776544 345679999999999999999999999999999
Q ss_pred HhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000065 2143 ELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2462)
Q Consensus 2143 ~LL~~~~e~~~~~~R~~aA~lL~km~aD 2170 (2462)
+++-+ .+...+.+..+|-.+++.
T Consensus 147 ei~~~-----~~~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 147 EIIPN-----QSFQMEIALNLLLNLLSR 169 (543)
T ss_pred HHHHh-----CcchHHHHHHHHHHHHHh
Confidence 98876 245566777777776654
No 103
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=65.44 E-value=87 Score=36.37 Aligned_cols=151 Identities=15% Similarity=0.194 Sum_probs=92.6
Q ss_pred HHHHHHhCCchHHHHHHHhhhhcccCCccccccchhhcccccCCcceeEeecCCCcccccccHHHHHHHHhcCCcCcCCc
Q 000065 1127 IEACVLVGGCVLAVDLLTVVHETSERTAIPLQSNLLAATAFMEPFKEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTR 1206 (2462)
Q Consensus 1127 ~~~~v~~~G~~llvdLltlah~~~~~~~~~~q~n~i~a~~~~~~~KEWyy~~~~g~~~GPvs~~eLk~l~~~g~I~~~T~ 1206 (2462)
+.+|+..||+.+|++++--... ..|++ |+-. -++...+.+|...|.+.|++.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~-----------------------~~~~~----~~~L-a~~L~af~eLMeHg~vsWd~l 55 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTE-----------------------IQPCK----GEIL-AYALTAFVELMEHGIVSWDTL 55 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCc-----------------------cCcch----HHHH-HHHHHHHHHHHhcCcCchhhc
Confidence 4689999999999998821110 00011 0001 134556667878777777652
Q ss_pred eecccCcchhhhhhhHHHHHHHhhcCCcCChhhHHHHHHHHHHHHhccccCCCCCCCccccCcchhhhccCCCchHHHHH
Q 000065 1207 CWASGMLDWKKLRDIRELRWALAVRVPVLTPTQVGEAALAILHNMVSAHSDLDDAGEIVTPTPRVKWILSSSRCLPHIAQ 1286 (2462)
Q Consensus 1207 ~Wa~Gm~~W~~l~~ipqLrW~la~g~~vl~~~~l~~~~L~iL~~~~~~~p~~d~~g~~i~P~Prvkr~Ls~~~~LphlvQ 1286 (2462)
.=.-++.|.++. ...+. ...+...+|.||.+|+...|. ....+.+.-.++-|+.
T Consensus 56 -------~~~FI~Kia~~V----n~~~~--d~~i~q~sLaILEs~Vl~S~~-------------ly~~V~~evt~~~Li~ 109 (160)
T PF11841_consen 56 -------SDSFIKKIASYV----NSSAM--DASILQRSLAILESIVLNSPK-------------LYQLVEQEVTLESLIR 109 (160)
T ss_pred -------cHHHHHHHHHHH----ccccc--cchHHHHHHHHHHHHHhCCHH-------------HHHHHhccCCHHHHHH
Confidence 111222222221 11221 566778999999998885432 2345566677788888
Q ss_pred hhhcCCchHHHHHHHHHHHHHhhChHHHHHHHhhhHHhhhhhcCCCChhhHHHHhhhhhhhhcc
Q 000065 1287 AMLSGEPSIVEAAAALLKAVVTRNPKAMIRLYSTGAFYFALAYPGSNLYSIAQLFSVTHVHQAF 1350 (2462)
Q Consensus 1287 lLLt~~p~lve~~~~LL~~l~~~n~~~~~~Ly~tG~f~f~L~y~gsn~~~ia~lL~~~H~~Qa~ 1350 (2462)
.|-..++.+=.++..|+..+...-++.-. ..|++.|...|.+|..
T Consensus 110 hLq~~~~~iq~naiaLinAL~~kA~~~~r-------------------~~i~~~l~~k~~R~~I 154 (160)
T PF11841_consen 110 HLQVSNQEIQTNAIALINALFLKADDSKR-------------------KEIAETLSQKQIRQVI 154 (160)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCChHHH-------------------HHHHHHHHHHHHHHHH
Confidence 88889999999999999998876655222 2566777776666653
No 104
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=64.72 E-value=22 Score=38.26 Aligned_cols=68 Identities=18% Similarity=0.293 Sum_probs=52.7
Q ss_pred ceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCChHHHH
Q 000065 140 PYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTNSAIV 215 (2462)
Q Consensus 140 p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r----~~l~~~~~~~~~ii 215 (2462)
++.|+||+..|...|+.++.++...+|+.+...+- | .+-|.+. -|+.+. +|.|.+. +-++|.
T Consensus 22 ~y~L~v~~~~l~L~d~~~~~~l~~WP~~~LRryG~----d-------~~~FsFE--AGRrC~tGeG~f~F~t~-~~~~if 87 (104)
T cd01203 22 SYMLRMGPTELQLKSEDLGATLYMWPYRFLRKYGR----D-------KGKFSFE--AGRRCTSGEGVFTFDTT-QGNEIF 87 (104)
T ss_pred eEEEEEcCCEEEEEcCCCCcEEEEeehHhhhhhcc----c-------CCEEEEE--ecCcCCCCCcEEEEecC-CHHHHH
Confidence 78999999999999999999999999999986443 4 3566553 454443 7888884 777888
Q ss_pred HHHHHH
Q 000065 216 SSLTKT 221 (2462)
Q Consensus 216 ~~i~~~ 221 (2462)
+.+.++
T Consensus 88 ~~v~~~ 93 (104)
T cd01203 88 RAVEAA 93 (104)
T ss_pred HHHHHH
Confidence 877544
No 105
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.62 E-value=17 Score=48.55 Aligned_cols=137 Identities=19% Similarity=0.132 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhhCccchhcccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHH
Q 000065 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQML 2105 (2462)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL 2105 (2462)
.+.+.-||-|+....|.+.+++.+.+-+.+|..++..... -.+-..+.=+|+.++.+..|--.+.+...+++.|..++
T Consensus 169 ~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~--~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll 246 (514)
T KOG0166|consen 169 REQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK--LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL 246 (514)
T ss_pred HHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc--hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999999999999976421 12445566677888888876666666666888899888
Q ss_pred hhC-cchHHHHHHHHHHhh-cchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHh
Q 000065 2106 HYA-PACREGVLHVLYALA-STPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLV 2168 (2462)
Q Consensus 2106 ~~~-p~~~~~~L~~L~aL~-s~t~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~ 2168 (2462)
+.. ++....++-.+.-|. ...+.++..++.|.+..|.++|.... ..++..|-..++-++
T Consensus 247 ~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~----~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 247 HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSS----PKVVTPALRAIGNIV 307 (514)
T ss_pred hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCC----cccccHHHhhcccee
Confidence 863 444444555555555 46688888899999999999998752 334444444444443
No 106
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=64.62 E-value=26 Score=38.39 Aligned_cols=108 Identities=11% Similarity=0.096 Sum_probs=66.6
Q ss_pred hhhhHHHHHHHHhhhhhcccccCCccccccccCCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccC
Q 000065 103 RFRASILTELHRIRWVRLNAVAEFPVLHLRRRNSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYG 182 (2462)
Q Consensus 103 ~~Ra~lLT~l~r~r~~~~~~~~~~~~~~~~~~k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~ 182 (2462)
..|.++.-++++-.... ..-........+.+|.+|.|.|++.||-.+|+.+|.++..++.++|. +....|.
T Consensus 20 ~~g~~~v~~ai~~~~~~----~~~~~~~~~~~~~~~~~V~l~vs~~gI~v~~~~t~~~l~~~~i~~Is---~~~~~d~-- 90 (140)
T PF00640_consen 20 SRGSDVVREAIQRLKAE----KIAKSKKSKSNKKKPQKVTLNVSSDGIKVIDPDTGEVLMSHPIRRIS---FCAVGDP-- 90 (140)
T ss_dssp HHHHHHHHHHHHHHHHH----CCCSHHHHHTTTSTSEEEEEEEETTEEEEEETTTTCEEEEEEGGGEE---EEEESST--
T ss_pred chhHHHHHHHHHHHHhh----hhhhhhccccccccCeEEEEEEcCCeEEEecCccccccccCCccceE---EEEecCC--
Confidence 35777777766543111 00001111234677889999999999999999999999999999996 5443121
Q ss_pred CCCCCCcEEEeeccCCCc--cccccCCCCChHHHHHHHHHH
Q 000065 183 KRSETGGFVLCPLYGRKS--KAFQAAPGTTNSAIVSSLTKT 221 (2462)
Q Consensus 183 ~~~~~~gfvl~~~~g~~~--r~~l~~~~~~~~~ii~~i~~~ 221 (2462)
.++.-|...-..++.+ .-|+|.|...-++|.+.|.++
T Consensus 91 --~~~~~Fafi~~~~~~~~~~CHVF~~~~~A~~i~~~i~~a 129 (140)
T PF00640_consen 91 --DDKRVFAFIARDPRSSRFYCHVFKCEDQAQEICQAIGQA 129 (140)
T ss_dssp --TETTEEEEEEEETSSSCEEEEEEEESSCHHHHHHHHHHH
T ss_pred --CcceEEEEEeccCCCCccccEeeeHhhHHHHHHHHHHHH
Confidence 1234444321223322 468888865456777776543
No 107
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=64.11 E-value=1.3e+02 Score=41.23 Aligned_cols=255 Identities=18% Similarity=0.182 Sum_probs=128.0
Q ss_pred HHhhCcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC-CCCChHHHHHHH
Q 000065 2104 MLHYAPACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ-PMHGPRVAITLA 2182 (2462)
Q Consensus 2104 lL~~~p~~~~~~L~~L~aL~s~t~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~aD-~lhGPrV~~~L~ 2182 (2462)
....=|++...+++.++.|+.. ...++|.+|.+-|-.++.| +-|-+||.-+|.
T Consensus 49 ffk~FP~l~~~Ai~a~~DLcED--------------------------ed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~ 102 (556)
T PF05918_consen 49 FFKHFPDLQEEAINAQLDLCED--------------------------EDVQIRKQAIKGLPQLCKDNPEHVSKVADVLV 102 (556)
T ss_dssp HHCC-GGGHHHHHHHHHHHHT---------------------------SSHHHHHHHHHHGGGG--T--T-HHHHHHHHH
T ss_pred HHhhChhhHHHHHHHHHHHHhc--------------------------ccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHH
Confidence 4445577777777777776632 2355666666666666653 455566666666
Q ss_pred hhCcH-----------HHHHHHhcCchhhHHHhhcccCcCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCc
Q 000065 2183 RFLPD-----------GLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPE 2251 (2462)
Q Consensus 2183 KfLP~-----------~fvdamrdsp~~a~v~~fes~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~~~~~W~lPe 2251 (2462)
++|-. .++.-++-+|..+.-.+|++..-++. =++.+|.++..+|..-...+-..-.. |. +-.|
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~--~de~~Re~~lkFl~~kl~~l~~~~~~-p~---~E~e 176 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKS--GDEQVRERALKFLREKLKPLKPELLT-PQ---KEME 176 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---H--S-HHHHHHHHHHHHHHGGGS-TTTS-------HHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhCcHHHhh-ch---HHHH
Confidence 66643 77888888887776667776652221 14668998877774322111000000 00 0001
Q ss_pred cccc---cccCCCCcEEeee----eehhhccCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHH
Q 000065 2252 QASA---QQEMRDEPQVGGI----YVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSL 2324 (2462)
Q Consensus 2252 ~f~~---y~~l~~El~VGGV----YlRLFl~nP~w~LR~PK~FL~~Ll~~~~~~~~~~~~e~~~~d~~ll~llt~A~v~L 2324 (2462)
.|.. -..+.+ |-|+ ++.++-.=+-|..-.|-.....|++-+.+.+.-..+ -+..|+ +.+-.-+-|+
T Consensus 177 ~~i~~~ikkvL~D---VTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~-f~~sD~---e~Idrli~C~ 249 (556)
T PF05918_consen 177 EFIVDEIKKVLQD---VTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQP-FDPSDP---ESIDRLISCL 249 (556)
T ss_dssp HHHHHHHHHHCTT-----HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS----SSSH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---ccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCC-CCCcCH---HHHHHHHHHH
Confidence 1110 011222 2222 222333344444456888888899988887754322 122333 5566777889
Q ss_pred HhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCccccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhCC
Q 000065 2325 LRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAAS 2404 (2462)
Q Consensus 2325 L~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vLh~Ls~s 2404 (2462)
.++-|-.+-.+.+ .+|+..|..+.-+ + ++ .. ++..+..-|++|-+||..
T Consensus 250 ~~Alp~fs~~v~S----skfv~y~~~kvlP--------~----------l~--------~l-~e~~kl~lLk~lAE~s~~ 298 (556)
T PF05918_consen 250 RQALPFFSRGVSS----SKFVNYMCEKVLP--------K----------LS--------DL-PEDRKLDLLKLLAELSPF 298 (556)
T ss_dssp HHHGGG-BTTB------HHHHHHHHHHTCC--------C----------TT--------------HHHHHHHHHHHHHTT
T ss_pred HHhhHHhcCCCCh----HHHHHHHHHHhcC--------C----------hh--------hC-ChHHHHHHHHHHHHHcCC
Confidence 9988887665554 7888888865321 1 11 11 245567777777777765
Q ss_pred hhHHHHhhhccCCCCcchHHHHHHhccC
Q 000065 2405 TTCAEAMAATSTGTPQVVPILMKAIGWQ 2432 (2462)
Q Consensus 2405 ~~Cv~ala~~~~~~~~~v~~l~~a~~~~ 2432 (2462)
.. ++-..++. |.+...|++.|-..
T Consensus 299 ~~---~~d~~~~L-~~i~~~L~~ymP~~ 322 (556)
T PF05918_consen 299 CG---AQDARQLL-PSIFQLLKKYMPSK 322 (556)
T ss_dssp -------THHHHH-HHHHHHHHTTS---
T ss_pred CC---cccHHHHH-HHHHHHHHHhCCCC
Confidence 43 33333343 55677788888754
No 108
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=62.98 E-value=21 Score=37.87 Aligned_cols=75 Identities=23% Similarity=0.212 Sum_probs=53.9
Q ss_pred cCCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc----ccccCCCC
Q 000065 134 RNSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGT 209 (2462)
Q Consensus 134 ~k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r----~~l~~~~~ 209 (2462)
+.+---++.|+||+..|...|+.++.+++..+|+.|...+- | .+-|.+. -|+.+- .|.|.+.
T Consensus 17 ~~~l~g~~~L~l~~~~l~L~~~~~~~~~~~Wpl~~lRryG~----~-------~~~F~fE--aGRrc~tG~G~f~f~t~- 82 (100)
T PF02174_consen 17 RCGLSGPYLLCLTPDELILIDPQSGEPILEWPLRYLRRYGR----D-------DGIFSFE--AGRRCPTGEGLFWFQTP- 82 (100)
T ss_dssp CSSSEEEEEEEEESSEEEEEETTTTEEEEEEEGGGEEEEEE----E-------TTEEEEE--ESTTSTTCSEEEEEEES-
T ss_pred CCCceEEEEEEECCCEEEEecCCCCceEEEEEhHHhhhhcc----C-------CCEEEEE--ECCcCCCCCcEEEEEeC-
Confidence 34444489999999999999999999999999999986443 2 3566664 453333 6777774
Q ss_pred ChHHHHHHHHHHH
Q 000065 210 TNSAIVSSLTKTA 222 (2462)
Q Consensus 210 ~~~~ii~~i~~~A 222 (2462)
+-++|.+.|.+..
T Consensus 83 ~a~~I~~~v~~~i 95 (100)
T PF02174_consen 83 DAEEIFETVERAI 95 (100)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666776665443
No 109
>PF13446 RPT: A repeated domain in UCH-protein
Probab=61.67 E-value=13 Score=35.89 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=35.4
Q ss_pred CchHHHHHHhcCCccCCCCCCccccccchhhcccccccCCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhh
Q 000065 1500 LSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQ 1579 (2462)
Q Consensus 1500 ~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~sk~~~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLs 1579 (2462)
|+.++||++||+++ +.+++.|-.+|+.... -.| .......+|..++.
T Consensus 2 ~~~~~Ay~~Lgi~~-------------------------~~~Dd~Ii~~f~~~~~-~~P-------~~~~~~r~AL~~Ia 48 (62)
T PF13446_consen 2 MDVEEAYEILGIDE-------------------------DTDDDFIISAFQSKVN-DDP-------SQKDTLREALRVIA 48 (62)
T ss_pred CCHHHHHHHhCcCC-------------------------CCCHHHHHHHHHHHHH-cCh-------HhHHHHHHHHHHHH
Confidence 78899999999973 6788999999997665 223 23445566666666
Q ss_pred c
Q 000065 1580 A 1580 (2462)
Q Consensus 1580 d 1580 (2462)
+
T Consensus 49 ~ 49 (62)
T PF13446_consen 49 E 49 (62)
T ss_pred H
Confidence 5
No 110
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.48 E-value=7.4e+02 Score=36.60 Aligned_cols=88 Identities=20% Similarity=0.200 Sum_probs=50.7
Q ss_pred hHHHHHHHHhh-CcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCCh
Q 000065 2097 SLLLLLQMLHY-APACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGP 2175 (2462)
Q Consensus 2097 vl~~Ll~lL~~-~p~~~~~~L~~L~aL~s~t~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~aD~lhGP 2175 (2462)
++..|+++.++ +|+.++.++.+|+++.. .+-...+ +-+.-++.+|...-.+.+..+|+.++..++.+....-+-+
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~---~~~~~~~-~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPE---TFGNTLQ-PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhh---hhccccc-hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccch
Confidence 34445555543 57788899988887763 2222222 1122345555443222233399999999999987533445
Q ss_pred HHHHHHHhhCcHH
Q 000065 2176 RVAITLARFLPDG 2188 (2462)
Q Consensus 2176 rV~~~L~KfLP~~ 2188 (2462)
.......-+||..
T Consensus 195 ~~~~~~~~llP~~ 207 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSL 207 (1075)
T ss_pred HHHHHHHHHhHHH
Confidence 5555566666653
No 111
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.19 E-value=24 Score=44.82 Aligned_cols=107 Identities=24% Similarity=0.281 Sum_probs=78.3
Q ss_pred cccCCCchhhHHHhcCHHHHHHHHHHhhhcccCCCCCCCcccee-ehhhhhhhhhhccChHHHHHHHhh-cchHHHHHHh
Q 000065 1655 CASSSLNGEELVRDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVI-VTNVMRTFSVLSQFESARTEVLQF-SGLVQDIVHC 1732 (2462)
Q Consensus 1655 v~~S~lNaeeL~re~G~~~L~~~l~rC~~vl~~~s~~~~~~~~v-~~~~~r~~~v~a~F~~cr~~i~~~-~~l~~di~~~ 1732 (2462)
..-|..|-.+|+.-||+++|-.++. ..++.+|- |++.+.-++| =...|+.+.+. |.++..++.+
T Consensus 194 mThs~EnRr~LV~aG~lpvLVsll~-----------s~d~dvqyycttaisnIaV---d~~~Rk~Laqaep~lv~~Lv~L 259 (550)
T KOG4224|consen 194 MTHSRENRRVLVHAGGLPVLVSLLK-----------SGDLDVQYYCTTAISNIAV---DRRARKILAQAEPKLVPALVDL 259 (550)
T ss_pred hhhhhhhhhhhhccCCchhhhhhhc-----------cCChhHHHHHHHHhhhhhh---hHHHHHHHHhcccchHHHHHHH
Confidence 4457789999999999998876653 22333332 4444444444 34567777665 6677666644
Q ss_pred hccccchhHHHHHHHHHHHhhCCHHHHHHHHHhccHHHHHHHhh
Q 000065 1733 TELELVPGAVDAALQTIAHVSVSSELQDALLKAGALWFLLPLLL 1776 (2462)
Q Consensus 1733 l~l~~~~~l~~aALe~v~~~a~~~elq~~i~~~GVLw~LL~lLf 1776 (2462)
.. ...++++..|--.+..++++.+.|-.|.++|-+.+|+.+|-
T Consensus 260 md-~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llq 302 (550)
T KOG4224|consen 260 MD-DGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQ 302 (550)
T ss_pred Hh-CCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHh
Confidence 33 55678888999999999999999999999999999999983
No 112
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=56.06 E-value=40 Score=42.54 Aligned_cols=133 Identities=17% Similarity=0.112 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhhCccchhcccccCChhhhhcccC----CCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHH
Q 000065 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFS----VPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLL 2101 (2462)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~----~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~L 2101 (2462)
..+++++|.++++ .+.....+-..+.+..|+..|. .....+.+++=.++-++=.||.+.++++.|.+.. +++.|
T Consensus 167 ~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~-~i~~L 244 (312)
T PF03224_consen 167 QYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY-LIPLL 244 (312)
T ss_dssp -HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc-hHHHH
Confidence 3678899999984 5566666666777888888882 1112223344557778889999999999999877 88888
Q ss_pred HHHHhhCc--chHHHHHHHHHHhhcchH--HHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHH
Q 000065 2102 LQMLHYAP--ACREGVLHVLYALASTPE--LAWAAAKHGGVVYILELLLPSQQETPLQQRAAAAS 2162 (2462)
Q Consensus 2102 l~lL~~~p--~~~~~~L~~L~aL~s~t~--lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~aA~ 2162 (2462)
..+++..+ -....++-+|..|++.+. ++.+.+.+|+. -+|+.|..+ ....++..+....
T Consensus 245 ~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l-~~l~~L~~r-k~~Dedl~edl~~ 307 (312)
T PF03224_consen 245 ADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLL-KTLQNLSER-KWSDEDLTEDLEF 307 (312)
T ss_dssp HHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HH-HHHHHHHSS---SSHHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHH-HHHHHHhcC-CCCCHHHHHHHHH
Confidence 88887643 345568899999998776 88888887644 556666554 3445666655543
No 113
>PF08416 PTB: Phosphotyrosine-binding domain; InterPro: IPR013625 The phosphotyrosine-binding domain (PTB, also phosphotyrosine-interaction or PI domain) of tensin tends to be found at the C terminus of a protein. Tensin is a multi-domain protein that binds to actin filaments and functions as a focal-adhesion molecule (focal adhesions are regions of plasma membrane through which cells attach to the extracellular matrix). Human tensin has actin-binding sites, an SH2 (IPR000980 from INTERPRO) domain and a region similar to the tumour suppressor PTEN []. The PTB domain interacts with the cytoplasmic tails of beta integrin by binding to an NPXY motif []. ; GO: 0005515 protein binding; PDB: 3HQC_A 2DKQ_A 2LOZ_A 2CY5_A 2CY4_A 2GJY_A 1WVH_A.
Probab=55.92 E-value=22 Score=39.72 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=57.5
Q ss_pred cCCccc-ceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCC--cEEEeeccCCCccccccCCC-C
Q 000065 134 RNSEWV-PYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETG--GFVLCPLYGRKSKAFQAAPG-T 209 (2462)
Q Consensus 134 ~k~~w~-p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~~--gfvl~~~~g~~~r~~l~~~~-~ 209 (2462)
.+.-|. .+.|+|++.||..+|..++..+=+|+...|...+..+ + ...+++ |||.-.-..+..-+|+|.|. .
T Consensus 34 ~~~~w~q~~~lkV~~~~v~L~D~~~k~~le~yPl~~I~~c~~~~--~---~~~~~~il~fV~r~~~~~~~~~H~Fqc~ev 108 (131)
T PF08416_consen 34 KGRIWPQEMHLKVSDQGVTLTDIETKEFLEHYPLSSIQFCGADP--D---SRRYNSILGFVVRKPGSSKPNVHLFQCEEV 108 (131)
T ss_dssp SS-SS-EEEEEEEETTEEEEEESSTSSECEEEECCCEEEEEEET--T---TTEECBEEEEEEEETTCCCEEEEEEEETCT
T ss_pred CCCcccEEEEEEEeCCeEEEEECcccchhhhCCHhHeeeccccC--C---CCccceEEEEEEecCCCCCCcEEEEEcCCC
Confidence 477888 8889999999999999999989999999997543431 1 111234 34432111233448999873 5
Q ss_pred ChHHHHHHHHHHHhhh
Q 000065 210 TNSAIVSSLTKTAKSM 225 (2462)
Q Consensus 210 ~~~~ii~~i~~~A~~~ 225 (2462)
..+.+.+.|+.+..++
T Consensus 109 ~a~~~~~~I~~~v~~~ 124 (131)
T PF08416_consen 109 DAEQPAEDIVSAVSKV 124 (131)
T ss_dssp CTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5666777887776553
No 114
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=53.93 E-value=2.6e+02 Score=35.89 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=50.3
Q ss_pred hHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhhCcchH-----HHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhc
Q 000065 2072 QLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHYAPACR-----EGVLHVLYALASTPELAWAAAKHGGVVYILELLL 2146 (2462)
Q Consensus 2072 ~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~~p~~~-----~~~L~~L~aL~s~t~lvkqal~~GgvlyLL~LL~ 2146 (2462)
..|-.+-+..+.|.+=++++.. ..+.++|+.+|....-.+ =.+.+..+.-...|.+++..+..|.+--|-++|.
T Consensus 346 EaCWTiSNITAGnteqiqavid-~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~ 424 (526)
T COG5064 346 EACWTISNITAGNTEQIQAVID-ANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD 424 (526)
T ss_pred hhheeecccccCCHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHh
Confidence 3444444555678888888775 447788887775422111 1244555555568899999999999888888875
Q ss_pred CC
Q 000065 2147 PS 2148 (2462)
Q Consensus 2147 ~~ 2148 (2462)
-.
T Consensus 425 ~~ 426 (526)
T COG5064 425 VV 426 (526)
T ss_pred cc
Confidence 43
No 115
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=52.02 E-value=16 Score=31.30 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=33.0
Q ss_pred hhhhccCCCchHHHHHhhhcCCchHHHHHHHHHHHHH
Q 000065 1271 VKWILSSSRCLPHIAQAMLSGEPSIVEAAAALLKAVV 1307 (2462)
Q Consensus 1271 vkr~Ls~~~~LphlvQlLLt~~p~lve~~~~LL~~l~ 1307 (2462)
.|+.+.+..++|+|+++|-+.++.+++.++..|..|.
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677888899999999999999999999999998874
No 116
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=46.54 E-value=5.1e+02 Score=34.47 Aligned_cols=294 Identities=17% Similarity=0.236 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHhhCccchhcccccCChhh---hhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHH
Q 000065 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLP---LFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLL 2102 (2462)
Q Consensus 2026 l~maL~AL~nLL~~nP~la~~~~s~~~L~~---Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll 2102 (2462)
+..+++-+--.|++++.-.+.+-...+..+ --.+|+.-.+.+.-+....-.|++.++.+..|.-......-....|.
T Consensus 83 v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~ 162 (442)
T KOG2759|consen 83 VQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLK 162 (442)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 345666777788887775554432211111 11122222344666778788999999999999876654443445555
Q ss_pred HHHhh--CcchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHH-------------HHHH----
Q 000065 2103 QMLHY--APACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAA-------------AASL---- 2163 (2462)
Q Consensus 2103 ~lL~~--~p~~~~~~L~~L~aL~s~t~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~-------------aA~l---- 2163 (2462)
..+.+ +++.+..+.++|..|.-.++.--......|+..++.++.++. .+.|..-+ +|+.
T Consensus 163 ~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~--~~~QlQYqsifciWlLtFn~~~ae~~~~~ 240 (442)
T KOG2759|consen 163 EQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTK--CGFQLQYQSIFCIWLLTFNPHAAEKLKRF 240 (442)
T ss_pred HHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccC--cchhHHHHHHHHHHHhhcCHHHHHHHhhc
Confidence 55544 457777777788778766665555555677777777664221 11221111 1222
Q ss_pred -----HHHHhcCCCCChHH-HHHH---HhhCcH--------HHHHHHhcCchhhHHHhhcccCcC-cccccC-HHHHHHH
Q 000065 2164 -----LGKLVGQPMHGPRV-AITL---ARFLPD--------GLVSVIRDGPGEAVVSALEQTTET-PELVWT-PAMAASL 2224 (2462)
Q Consensus 2164 -----L~km~aD~lhGPrV-~~~L---~KfLP~--------~fvdamrdsp~~a~v~~fes~~En-PELIWn-~~mR~~v 2224 (2462)
|.++..+. .-.|| |++| ..+++. ....+|.....-.+++.++..--. +||+=+ +-.++++
T Consensus 241 ~li~~L~~Ivk~~-~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L 319 (442)
T KOG2759|consen 241 DLIQDLSDIVKES-TKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKL 319 (442)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 22222110 11233 2222 222322 233444443333344555544322 333211 1245556
Q ss_pred HHHHHHHH--HHHHHHHhcCCcccccCCccccccccCCCCcEEeeeeehhhccCCCCCCCChHHHH---HHHHHHHHHHH
Q 000065 2225 SAQISTMA--SDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFL---EGLLDQYLSSI 2299 (2462)
Q Consensus 2225 ~~~i~~~~--~~~~~~Q~~~~~~~W~lPe~f~~y~~l~~El~VGGVYlRLFl~nP~w~LR~PK~FL---~~Ll~~~~~~~ 2299 (2462)
.+.++.+. .+|.++...|. .+|+++-..... |. -|-.+|- -+++...+..+
T Consensus 320 ~~svq~LsSFDeY~sEl~sG~-L~WSP~Hk~e~F----------------------W~-eNa~rlnennyellkiL~~lL 375 (442)
T KOG2759|consen 320 KNSVQDLSSFDEYKSELRSGR-LEWSPVHKSEKF----------------------WR-ENADRLNENNYELLKILIKLL 375 (442)
T ss_pred HHHHHhhccHHHHHHHHHhCC-cCCCccccccch----------------------HH-HhHHHHhhccHHHHHHHHHHH
Confidence 66666654 34555555554 889944322110 00 0122222 24777777777
Q ss_pred hccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhc
Q 000065 2300 AATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEG 2352 (2462)
Q Consensus 2300 ~~~~~e~~~~d~~ll~llt~A~v~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~ 2352 (2462)
...+ |+-.+.+..-=|-.+.|+.|---+-|-.+|.=.+++++|+|++
T Consensus 376 e~s~------Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d 422 (442)
T KOG2759|consen 376 ETSN------DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHED 422 (442)
T ss_pred hcCC------CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCC
Confidence 7643 3434455566678899999999999999999999999999975
No 117
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=43.38 E-value=27 Score=39.91 Aligned_cols=43 Identities=35% Similarity=0.660 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC--------chHHHHHHHHHHHHHhhccc
Q 000065 1540 IDEEKLKRQYRKLAMKYHPDKNP--------EGREKFLAVQKAYERLQATM 1582 (2462)
Q Consensus 1540 a~e~~IKkAYRkLa~k~HPDKnp--------~a~ekF~~I~~AYEvLsd~~ 1582 (2462)
.+...++.-|.--.++.|||+.. -|.+.-..+|+||..|.||.
T Consensus 22 ~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL 72 (168)
T KOG3192|consen 22 IDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPL 72 (168)
T ss_pred CCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHH
Confidence 34455666677788889999842 26778999999999999975
No 118
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=41.25 E-value=37 Score=42.05 Aligned_cols=76 Identities=13% Similarity=0.098 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhhcccCCCCChhHHHHHHhhcCCHHHHHHHHHHHHH-HHhhhhcHHHHHHhCCchHHHHHHHhhhh
Q 000065 1073 CARAMAIVYEQHYTTIGPFEGTAHITVLLDRTDDRALRHRLLLLLKV-LMKVLANIEACVLVGGCVLAVDLLTVVHE 1148 (2462)
Q Consensus 1073 cL~am~ivY~r~~~~ig~f~~~~y~~~Ll~~t~d~~~R~~lll~~~~-L~~~~~N~~~~v~~~G~~llvdLltlah~ 1148 (2462)
.|+.++.+...+-...+.-.++.-++.+|+.+.++.+....|..+.. |+.++.|.+.|-..+|+..++.++...+.
T Consensus 114 vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~ 190 (257)
T PF08045_consen 114 VLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKST 190 (257)
T ss_pred HHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccc
Confidence 56777777666666666666899999999888888888777666555 67999999999999999999999965544
No 119
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=40.68 E-value=3.9e+02 Score=33.85 Aligned_cols=97 Identities=15% Similarity=0.021 Sum_probs=69.5
Q ss_pred ehhhhhhhhhhccChHHHHHHHhhcchHHHHHHhh------ccccchhHHHHHHHHHHHhhCCHHHHHHHHHhccHHHHH
Q 000065 1699 VTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCT------ELELVPGAVDAALQTIAHVSVSSELQDALLKAGALWFLL 1772 (2462)
Q Consensus 1699 ~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l------~l~~~~~l~~aALe~v~~~a~~~elq~~i~~~GVLw~LL 1772 (2462)
...+++|++.+.+-+..|..+.+ .+.+.-+..++ .-.....++..++=|+..++=+++....+.+.+++..|+
T Consensus 167 ~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~ 245 (312)
T PF03224_consen 167 QYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLA 245 (312)
T ss_dssp -HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHH
Confidence 36778999999999999999988 55556666666 223456788899999999999999999999999665555
Q ss_pred HHhhcCCCcccccCccccccccccHHHHHHHHHHHHHHHHHHhhC
Q 000065 1773 PLLLQYDSTAEKSDTNESHGVGASVQIAKNMHAVRAAQALSRLSG 1817 (2462)
Q Consensus 1773 ~lLf~yD~Tlees~le~~~~~~~~~qivkn~lAk~a~~aL~~L~g 1817 (2462)
.++- ...||..-+.++-.+..|..
T Consensus 246 ~i~~---------------------~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 246 DILK---------------------DSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHH---------------------H--SHHHHHHHHHHHHHTTS
T ss_pred HHHH---------------------hcccchHHHHHHHHHHHHHh
Confidence 5552 22345555666666666643
No 120
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=39.61 E-value=88 Score=33.92 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=52.3
Q ss_pred ccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCChHH
Q 000065 138 WVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTNSA 213 (2462)
Q Consensus 138 w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r----~~l~~~~~~~~~ 213 (2462)
--++.|++|+.+|..+|+.+..++...+|+.|...+- | .+-|-+. -|+.+- .|-|.+. +.++
T Consensus 20 ~G~y~L~lt~~~l~L~~~~~~~~~~~wpl~~lRRyG~----~-------~~~FsfE--aGRrc~tG~G~f~f~t~-~~~~ 85 (104)
T cd00824 20 LGSYRLCLTSKELTLVKLGSRVALVVWPLMFLRRYGY----D-------SNLFSFE--AGRRCVTGEGIFTFQTD-RAEE 85 (104)
T ss_pred ceeEEEEECCCEEEEEecCCCceEEEeehHHeeeccc----C-------CCEEEEE--ccCcCCCCCCEEEEEcC-CHHH
Confidence 3489999999999999998889999999999985332 2 2444442 454433 6777763 6778
Q ss_pred HHHHHHHHHhh
Q 000065 214 IVSSLTKTAKS 224 (2462)
Q Consensus 214 ii~~i~~~A~~ 224 (2462)
|.+.|.++.+.
T Consensus 86 I~~~v~~~i~~ 96 (104)
T cd00824 86 IFQNVHETILA 96 (104)
T ss_pred HHHHHHHHHHH
Confidence 88888766443
No 121
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=39.43 E-value=60 Score=28.58 Aligned_cols=40 Identities=30% Similarity=0.387 Sum_probs=33.4
Q ss_pred hHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhc
Q 000065 2126 PELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVG 2169 (2462)
Q Consensus 2126 t~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~a 2169 (2462)
++-.+..++.||+.-|+++|.. .++.+|..++-.|+-|++
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~----~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKS----PDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTS----SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcC----CCHHHHHHHHHHHHHHhC
Confidence 5667788999999999999984 368999999999987753
No 122
>PF05536 Neurochondrin: Neurochondrin
Probab=39.26 E-value=1.1e+02 Score=41.74 Aligned_cols=131 Identities=16% Similarity=0.172 Sum_probs=85.4
Q ss_pred HHHHHhhCccchhcccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHhhCcchH
Q 000065 2033 LQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHYAPACR 2112 (2462)
Q Consensus 2033 L~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~~~p~~~ 2112 (2462)
+-..+..-|+++..-.--.++|.|.+++.... ...+..-|+++|..++++.+..+++.+.+ .++.|...+...+-..
T Consensus 80 vL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s--~~~~v~dalqcL~~Ias~~~G~~aLl~~g-~v~~L~ei~~~~~~~~ 156 (543)
T PF05536_consen 80 VLAAFCRDPELASSPQMVSRIPLLLEILSSSS--DLETVDDALQCLLAIASSPEGAKALLESG-AVPALCEIIPNQSFQM 156 (543)
T ss_pred HHHHHcCChhhhcCHHHHHHHHHHHHHHHcCC--chhHHHHHHHHHHHHHcCcHhHHHHHhcC-CHHHHHHHHHhCcchH
Confidence 33344446776654333367888888886642 24788999999999999999999999866 6788888888877778
Q ss_pred HHHHHHHHHhhcchH-HHHHHHHc---CCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000065 2113 EGVLHVLYALASTPE-LAWAAAKH---GGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2462)
Q Consensus 2113 ~~~L~~L~aL~s~t~-lvkqal~~---GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~aD 2170 (2462)
+.++++|..+++... -.+..-.. ..+.++=..|... .-..|..+...|+.+...
T Consensus 157 E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~----~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 157 EIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF----HGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh----ccchHHHHHHHHHHhcCc
Confidence 889999988886432 11111111 1222333344432 234566667777777653
No 123
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.18 E-value=99 Score=40.77 Aligned_cols=76 Identities=25% Similarity=0.322 Sum_probs=59.8
Q ss_pred HhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCccccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhCC
Q 000065 2325 LRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAAS 2404 (2462)
Q Consensus 2325 L~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vLh~Ls~s 2404 (2462)
|.--..+.-.+...|++|++..+|.+++-+ .-|+.+|-.||-.
T Consensus 372 lSFD~glr~KMv~~GllP~l~~ll~~d~~~-------------------------------------~iA~~~lYh~S~d 414 (791)
T KOG1222|consen 372 LSFDSGLRPKMVNGGLLPHLASLLDSDTKH-------------------------------------GIALNMLYHLSCD 414 (791)
T ss_pred ccccccccHHHhhccchHHHHHHhCCcccc-------------------------------------hhhhhhhhhhccC
Confidence 344677888899999999999999876421 3688899889988
Q ss_pred hhHHHHhhhccCCCCcchHHHHHHhccCCcc-h-hHHHHH
Q 000065 2405 TTCAEAMAATSTGTPQVVPILMKAIGWQGGS-I-LALETL 2442 (2462)
Q Consensus 2405 ~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~-~-~a~etl 2442 (2462)
.-.-.-+|.||| |+.+||++=..-++ | +++=+|
T Consensus 415 D~~K~MfayTdc-----i~~lmk~v~~~~~~~vdl~lia~ 449 (791)
T KOG1222|consen 415 DDAKAMFAYTDC-----IKLLMKDVLSGTGSEVDLALIAL 449 (791)
T ss_pred cHHHHHHHHHHH-----HHHHHHHHHhcCCceecHHHHHH
Confidence 888888999999 99999998876555 3 555443
No 124
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=38.92 E-value=36 Score=35.84 Aligned_cols=77 Identities=14% Similarity=0.348 Sum_probs=0.0
Q ss_pred cccccEEEEEecCeeee---------eCCCC-cccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeeh
Q 000065 33 RGRYKRILCISNATIIT---------LDPNT-LAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSS 102 (2462)
Q Consensus 33 rgkYkRIf~Ig~~~i~T---------~nP~t-l~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~K~~~mkFss 102 (2462)
++|++|++|++...=-. .|++. +.+.-+|+. .|+..|.-. .+.....+|.|++.| ...=..=|+
T Consensus 1 k~kK~r~Lclsv~~~~~~~v~l~k~K~~~~g~f~i~ktW~L-~eL~~I~~~-~~~~~~~~F~l~~~k----~y~W~a~s~ 74 (91)
T PF15277_consen 1 KKKKPRYLCLSVTNSPRIQVRLHKVKQNDNGSFQIGKTWDL-DELKAIDGI-NPDKDTPEFDLTFDK----PYYWEASSA 74 (91)
T ss_dssp GGEEEEEEEEEEETTETTEEEEEEEEE-CCS-EEEEEEEEG-GG--EEEE--SSS--TTEEEEESSS----EEEEEESSH
T ss_pred CCcccEEEEEEEecCCceEEEEEEEEecCCCcEEEeeEEeh-hhceeeeee-cCCCCCcCEEEEECC----CcEEEeCCH
Q ss_pred hhhhHHHHHHHHh
Q 000065 103 RFRASILTELHRI 115 (2462)
Q Consensus 103 ~~Ra~lLT~l~r~ 115 (2462)
..|...++.|.++
T Consensus 75 ~Ek~~Fi~~L~k~ 87 (91)
T PF15277_consen 75 KEKNTFIRSLWKL 87 (91)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 125
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.07 E-value=1.2e+02 Score=41.58 Aligned_cols=104 Identities=24% Similarity=0.348 Sum_probs=74.8
Q ss_pred HHHHHHHHHhccCCCCCCCCCchHHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHhhccccccchhhhhcCCcccc
Q 000065 2291 LLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEAD 2370 (2462)
Q Consensus 2291 Ll~~~~~~~~~~~~e~~~~d~~ll~llt~A~v~LL~~qp~LaD~vp~lG~lpkl~~~l~~~~~~~~~~~~~~~~~~~~~~ 2370 (2462)
=+|+|++.+=.-.. ..|+++-..+..|+|-||.++|+= - .-|++-+++.|-+.+
T Consensus 212 ~iD~Fle~lFalan---D~~~eVRk~vC~alv~Llevr~dk--l---~phl~~IveyML~~t------------------ 265 (885)
T KOG2023|consen 212 HIDKFLEILFALAN---DEDPEVRKNVCRALVFLLEVRPDK--L---VPHLDNIVEYMLQRT------------------ 265 (885)
T ss_pred HHHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHHhcHHh--c---ccchHHHHHHHHHHc------------------
Confidence 35666665443322 224667778999999999999963 2 346777888888754
Q ss_pred ccccCCCCCCCCCCChhhHhhhhHHHHHHHhhCChhHHHHhhhccCCCCcchHHHHHHhccCCcch
Q 000065 2371 RTYESDDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGSI 2436 (2462)
Q Consensus 2371 ~~~~~~~~~~~~~~~~~~~~~~s~l~vLh~Ls~s~~Cv~ala~~~~~~~~~v~~l~~a~~~~~~~~ 2436 (2462)
+.+.+.|-..|=+-.|.+|.+..|-+.+. --=|.+||.|...|.-..+.+
T Consensus 266 -------------qd~dE~VALEACEFwla~aeqpi~~~~L~---p~l~kliPvLl~~M~Ysd~D~ 315 (885)
T KOG2023|consen 266 -------------QDVDENVALEACEFWLALAEQPICKEVLQ---PYLDKLIPVLLSGMVYSDDDI 315 (885)
T ss_pred -------------cCcchhHHHHHHHHHHHHhcCcCcHHHHH---HHHHHHHHHHHccCccccccH
Confidence 22234566888899999999999999988 334578999999998765443
No 126
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=35.49 E-value=71 Score=36.82 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhcHHhhHhhhcchhhhhhHHhhhccCCcchHHHHHHHHHHHh
Q 000065 498 TVMGFVACLRRLLTSRTAASHVMSFPAAVGRIMGLLRNGSEGVAAEAAGLIAILI 552 (2462)
Q Consensus 498 ~~~~~~~aLrRL~as~~gf~~~~~~p~~~~~v~~~L~~~~~~v~~~a~~~l~~l~ 552 (2462)
.....+.|||=|+-++.|+.++..-|..+..|+.+|...+..+--.|+++|.++.
T Consensus 132 ~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 132 IEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4455799999999999999999999999999999999999999999999998863
No 127
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.70 E-value=36 Score=39.60 Aligned_cols=42 Identities=36% Similarity=0.583 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCc--------hHHHHHHHHHHHHHhhccc
Q 000065 1541 DEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKAYERLQATM 1582 (2462)
Q Consensus 1541 ~e~~IKkAYRkLa~k~HPDKnp~--------a~ekF~~I~~AYEvLsd~~ 1582 (2462)
+.+.++..|+.+.++||||+... +-+.+..++.||..|.++-
T Consensus 16 ~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l 65 (174)
T COG1076 16 DLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPL 65 (174)
T ss_pred HHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHH
Confidence 44568889999999999999742 2357888999999999864
No 128
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=32.56 E-value=8.1e+02 Score=35.48 Aligned_cols=106 Identities=24% Similarity=0.228 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHhhcchHHHHHHHHh---hC------cchHHHHHHHHHHhhcchHHHHHHHHcC--CH
Q 000065 2070 IPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLH---YA------PACREGVLHVLYALASTPELAWAAAKHG--GV 2138 (2462)
Q Consensus 2070 vq~~aL~VL~~ls~n~~CVeaiA~~~~vl~~Ll~lL~---~~------p~~~~~~L~~L~aL~s~t~lvkqal~~G--gv 2138 (2462)
.-...+.+|...+.-..|-+.+.+.. .+..||..+. .. ++..+..|+++..+.+ +|-... +-
T Consensus 138 ll~~llkLL~~c~Kv~~NR~~Ll~~~-al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~------ea~~~~~~~~ 210 (802)
T PF13764_consen 138 LLQVLLKLLRYCCKVKVNRRALLELN-ALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLS------EANSSSSSES 210 (802)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcC-CHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHH------HHhhhhhhhc
Confidence 44557778877788888889888744 5555555443 11 2333445555544442 111100 00
Q ss_pred hhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCC-CCChHHHHHHHhhCcH
Q 000065 2139 VYILELLLPSQQETPLQQRAAAASLLGKLVGQP-MHGPRVAITLARFLPD 2187 (2462)
Q Consensus 2139 lyLL~LL~~~~e~~~~~~R~~aA~lL~km~aD~-lhGPrV~~~L~KfLP~ 2187 (2462)
.-.+.... ...+.......+|.++.... -.-|++...|.|.||-
T Consensus 211 ~~~~~~~~-----~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~ 255 (802)
T PF13764_consen 211 KSSSSLSG-----SEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPF 255 (802)
T ss_pred cccccccc-----cccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhH
Confidence 00000000 00224555666777766431 1347888888888886
No 129
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.52 E-value=2.7e+02 Score=36.04 Aligned_cols=68 Identities=24% Similarity=0.256 Sum_probs=55.7
Q ss_pred cchHHHHHHHHHHhhcchHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHh
Q 000065 2109 PACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLAR 2183 (2462)
Q Consensus 2109 p~~~~~~L~~L~aL~s~t~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~aA~lL~km~aD~lhGPrV~~~L~K 2183 (2462)
++-...+|+-|.-++.+=+-+...+..||+.-+|..+.+ .++..|+.||.+++.+.. .-|+++..+..
T Consensus 97 le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~----~~~~lR~~Aa~Vigt~~q---NNP~~Qe~v~E 164 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLEN----SDAELRELAARVIGTAVQ---NNPKSQEQVIE 164 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcC----CcHHHHHHHHHHHHHHHh---cCHHHHHHHHH
Confidence 345667888888888877788888999999999996655 378999999999999987 57888876654
No 130
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.13 E-value=5.2e+02 Score=35.99 Aligned_cols=168 Identities=19% Similarity=0.201 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhcccccCChhhhhcccCCCCCCCCChhhHHHHHHHHhcCChhHHHHHHhhc-chHHH
Q 000065 2022 MIKNLQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADG-SSLLL 2100 (2462)
Q Consensus 2022 ~l~~l~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaiA~~~-~vl~~ 2100 (2462)
.++....+++...+++.++..=.. .....+.+|++|+..+ .+..-.|.++.....+..=++.+.... ..+.+
T Consensus 377 el~~t~~ale~a~~ic~~~~~g~~--~~~~el~~L~~~i~~P-----vVa~GVL~wi~~~l~~~~~~~~~~~~~p~~L~L 449 (584)
T PF04858_consen 377 ELKSTKQALEKAHAICCNAARGSS--ELQAELPKLYSCIRYP-----VVAMGVLRWIESFLTDPSYFSSITELTPVHLAL 449 (584)
T ss_pred HHHHHHHHHHHHHHHhhccccccc--hhHHHHHHHHHHhCCC-----hhhHHHHHHHHHHhcCcchhhhccccCchHHHH
Confidence 345556677777788776542111 2234677889988653 566778888855544544444333212 22222
Q ss_pred HHHHHhhCcchHHHHHHHHHHhhc-----chHHHHHHHHcCCHhhhHHhhcCC--------------C-CCCcHHHHHHH
Q 000065 2101 LLQMLHYAPACREGVLHVLYALAS-----TPELAWAAAKHGGVVYILELLLPS--------------Q-QETPLQQRAAA 2160 (2462)
Q Consensus 2101 Ll~lL~~~p~~~~~~L~~L~aL~s-----~t~lvkqal~~GgvlyLL~LL~~~--------------~-e~~~~~~R~~a 2160 (2462)
|-.....+|..+..+|++|..+.. .+.+++..+++..+-.++.|+.-+ + .--++-+|-=+
T Consensus 450 LdeIa~~Hp~lr~~vl~lL~~~le~~~~~l~~l~~le~kr~ilD~~V~L~s~G~VlPVl~~i~~~~~~~~iD~SLiRyFv 529 (584)
T PF04858_consen 450 LDEIATRHPLLRPSVLDLLVRLLESEGDELDILVQLELKRTILDRMVHLLSRGYVLPVLEYIRKCWARGDIDPSLIRYFV 529 (584)
T ss_pred hhHHHhcCHhhHHHHHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHhCCeeehHHHHHHHHHhccCCcHHHHHHHH
Confidence 333334678888889998877774 223455566665554444444332 1 11134455556
Q ss_pred HHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCc
Q 000065 2161 ASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGP 2197 (2462)
Q Consensus 2161 A~lL~km~aD~lhGPrV~~~L~KfLP~~fvdamrdsp 2197 (2462)
-++| .+.+.|..++-|...+.-+-=+...++||-.+
T Consensus 530 ~eVL-eii~PPYS~~Fv~~~l~ll~~~~i~~~~~~~~ 565 (584)
T PF04858_consen 530 TEVL-EIIGPPYSPEFVQLFLPLLENAEIRGGMRTEG 565 (584)
T ss_pred HHHH-HHcCCCCCHHHHHHHHHHHhchhhhhhhccCC
Confidence 6666 34455555555555554444455555664443
No 131
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=30.70 E-value=1.5e+02 Score=33.59 Aligned_cols=35 Identities=6% Similarity=0.190 Sum_probs=31.8
Q ss_pred CcccceEEEEeeceEEEecCCCCceEEEeeccCCC
Q 000065 136 SEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMD 170 (2462)
Q Consensus 136 ~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~ 170 (2462)
.+...|.|.|++.||..+|+.|++++..++.++|.
T Consensus 52 ~k~~~V~L~IS~~GI~v~d~~t~~~~~~~~i~~IS 86 (142)
T cd01273 52 AKLQKVEIRISIDGVIIAEPKTKAPMHTFPLGRIS 86 (142)
T ss_pred ccCcEEEEEEECCeEEEEEcCCCcEEEEcCcceEE
Confidence 45679999999999999999999999999888886
No 132
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=29.84 E-value=50 Score=42.15 Aligned_cols=52 Identities=31% Similarity=0.579 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC-------chHHHHHHHHHHHHHhhccccCCCCCChhh
Q 000065 1540 IDEEKLKRQYRKLAMKYHPDKNP-------EGREKFLAVQKAYERLQATMQGLQGPQPWR 1592 (2462)
Q Consensus 1540 a~e~~IKkAYRkLa~k~HPDKnp-------~a~ekF~~I~~AYEvLsd~~~r~~~p~~~~ 1592 (2462)
++...|+.+|++.+..+|||+-. ..++-|+.|++||++|++ ..+-|-++.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~-~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDD-DEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-cccccchhhhh
Confidence 46678999999999999999873 367789999999999998 33334555554
No 133
>cd01210 EPS8 Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. EPS8 is a regulator of Rac signaling. It consists of a PTB and an SH3 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=28.74 E-value=1.3e+02 Score=33.64 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=55.1
Q ss_pred ccCCccc-ceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccC--CCccccccCCCC
Q 000065 133 RRNSEWV-PYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYG--RKSKAFQAAPGT 209 (2462)
Q Consensus 133 ~~k~~w~-p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~~gfvl~~~~g--~~~r~~l~~~~~ 209 (2462)
+.++-|. +..|+|..-.|-.+|+.||+.+=+|++..|.-+... ++.. .+++=.++.---+ ++.-+|+|-|..
T Consensus 35 ~~G~iW~Q~m~lqv~~~~v~LlD~etk~elE~fpl~~I~~~~a~-~~~~----~ynslL~~vvq~~~~~~~e~hlFQc~~ 109 (127)
T cd01210 35 KQGRVWSQKMILRVRYQWVTLLDYETKEELESYPLSLIQEPTAF-TSME----LYNSILLFVVQEPGGSRTEMHIFQCQR 109 (127)
T ss_pred hcCCccccceEEEEcCCeEEEEcCCCcChhhcCCHhhcccccee-cCCC----CcCceEEEEEeCCCCCCCcEEEEEecc
Confidence 4689999 999999999999999999999999999999854221 1221 1345333321112 444599999863
Q ss_pred -ChHHHHHHHH
Q 000065 210 -TNSAIVSSLT 219 (2462)
Q Consensus 210 -~~~~ii~~i~ 219 (2462)
.-+.|...|.
T Consensus 110 v~A~~i~~DL~ 120 (127)
T cd01210 110 VGAEHLVEDLQ 120 (127)
T ss_pred ccHHHHHHHHH
Confidence 3334555554
No 134
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=27.72 E-value=1.9e+02 Score=32.16 Aligned_cols=79 Identities=9% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCC--CccccccCCCCC--
Q 000065 135 NSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGR--KSKAFQAAPGTT-- 210 (2462)
Q Consensus 135 k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~~gfvl~~~~g~--~~r~~l~~~~~~-- 210 (2462)
......|.|.|++.||..+|+.+++++..++.++|. +...-.. ++.=|+..--.++ .-.-|+|.+...
T Consensus 41 ~~k~~~V~L~IS~~gi~i~d~~t~~~l~~~~i~~IS---fc~~d~~-----~~~~FafIa~~~~~~~~~ChvF~~~~~~~ 112 (132)
T cd01267 41 WEKIPKVELDISIKGVKIIDPKTKTVLHGHPLYNIS---CCAQDKE-----DLRFFAFIAKDTETNKHYCHVFCSEKLGL 112 (132)
T ss_pred cCCCCeEEEEEEcCcEEEEeCCCCcEEEEcccceEE---EEecCCC-----CCeEEEEEEecCCCCceEEEEEECCCHHH
Q ss_pred hHHHHHHHHHH
Q 000065 211 NSAIVSSLTKT 221 (2462)
Q Consensus 211 ~~~ii~~i~~~ 221 (2462)
-++|+..|-++
T Consensus 113 A~~I~~tig~A 123 (132)
T cd01267 113 AEEIILTIGQA 123 (132)
T ss_pred HHHHHHHHHHH
No 135
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=25.78 E-value=94 Score=35.92 Aligned_cols=60 Identities=23% Similarity=0.384 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhccccCCCCCCCccccCcchhhhccCCCchHHHHHhhhcCCc--hHHHHHHHHHHHHHhhChH
Q 000065 1242 EAALAILHNMVSAHSDLDDAGEIVTPTPRVKWILSSSRCLPHIAQAMLSGEP--SIVEAAAALLKAVVTRNPK 1312 (2462)
Q Consensus 1242 ~~~L~iL~~~~~~~p~~d~~g~~i~P~Prvkr~Ls~~~~LphlvQlLLt~~p--~lve~~~~LL~~l~~~n~~ 1312 (2462)
..++..|..++. -++..|-..|.+.-|. ||-++|.|+.... ...+.++..|..+|..+|.
T Consensus 86 ~~ai~~L~~l~~----------~~~~~p~l~Rei~tp~-l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 86 EAAIITLTRLFD----------LIRGKPTLTREIATPN-LPKFIQSLLQLLQDSSCPETALDALATLLPHHPT 147 (165)
T ss_pred HHHHHHHHHHHH----------HhcCCCchHHHHhhcc-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCc
Confidence 345555555554 4566677677776555 9999999999888 9999999999999999885
No 136
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=25.66 E-value=89 Score=32.19 Aligned_cols=56 Identities=23% Similarity=0.227 Sum_probs=42.0
Q ss_pred EEEEecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeehh
Q 000065 39 ILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSSR 103 (2462)
Q Consensus 39 If~Ig~~~i~T~nP~tl~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~K~~~mkFss~ 103 (2462)
.+.|++.||..|+++.-.-++.+.| .+|..+.=. ...|+|.++.+ ++..+++|.|+
T Consensus 8 ~LGv~~~GI~i~~~~~~~~~~~f~W-~~I~~l~~~------~k~F~I~~~~~--~~~~~~~f~~~ 63 (90)
T PF09380_consen 8 WLGVSPRGISIYRDNNRISTQFFPW-SEISKLSFK------KKKFTIEVRDE--SKEIKLKFYTP 63 (90)
T ss_dssp EEEEESSEEEEEETTBSSSSEEEEG-GGEEEEEEE------TTEEEEEESST--SSSEEEEEE-S
T ss_pred EEEEcCCEeEEEeCCCcccceeeeh-hheeEEEec------ccEEEEEEeec--ccceEEEEEEC
Confidence 4679999999999888432999999 799887752 35999998762 34466777764
No 137
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.55 E-value=6.2e+02 Score=37.33 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhhCccchhcccccCChhhhhccc----CCCC-------------CCCCChhhHHHHHHHHhcCChhHHH
Q 000065 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECF----SVPF-------------APDSNIPQLCLNVLSLLTTCASCLE 2089 (2462)
Q Consensus 2027 ~maL~AL~nLL~~nP~la~~~~s~~~L~~Lf~~L----~~~~-------------~~~~~vq~~aL~VL~~ls~n~~CVe 2089 (2462)
.+|++-+..+.++-|...-..+.+ +.+||..+ .... .........|.++|-+++.+-.--
T Consensus 267 ~~ALe~ivs~~e~Ap~~~k~~~~~--~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~- 343 (1075)
T KOG2171|consen 267 HLALEFLVSLSEYAPAMCKKLALL--GHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK- 343 (1075)
T ss_pred HHHHHHHHHHHHhhHHHhhhchhh--hccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh-
Confidence 357777888888866654444332 22233322 1100 011224566777776666332211
Q ss_pred HHHhhcchHHHHHHHHh---hCc--chHHHHHHHHHHhhc-chHHHHHHHHcCCHhhhHHhhcCCCCCCcHHHHHHHHHH
Q 000065 2090 AMVADGSSLLLLLQMLH---YAP--ACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASL 2163 (2462)
Q Consensus 2090 aiA~~~~vl~~Ll~lL~---~~p--~~~~~~L~~L~aL~s-~t~lvkqal~~GgvlyLL~LL~~~~e~~~~~~R~~aA~l 2163 (2462)
.+++.++..+. +.+ ..+..+|-.|..... ..+.++. -+.-++++.+|.-++..|.+|-+|..+
T Consensus 344 ------~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-----~l~~Il~~Vl~~l~DphprVr~AA~na 412 (1075)
T KOG2171|consen 344 ------QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG-----NLPKILPIVLNGLNDPHPRVRYAALNA 412 (1075)
T ss_pred ------hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH-----HHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 23333333332 222 334456655555443 3333433 344566766666566789999999999
Q ss_pred HHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcC
Q 000065 2164 LGKLVGQPMHGPRVAITLARFLPDGLVSVIRDG 2196 (2462)
Q Consensus 2164 L~km~aD~lhGPrV~~~L~KfLP~~fvdamrds 2196 (2462)
++.|.+| .+|-++-.-...+||.++..|-+.
T Consensus 413 igQ~std--l~p~iqk~~~e~l~~aL~~~ld~~ 443 (1075)
T KOG2171|consen 413 IGQMSTD--LQPEIQKKHHERLPPALIALLDST 443 (1075)
T ss_pred HHhhhhh--hcHHHHHHHHHhccHHHHHHhccc
Confidence 9999999 789999999999999999988663
No 138
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=25.49 E-value=1.6e+02 Score=31.92 Aligned_cols=82 Identities=13% Similarity=0.098 Sum_probs=53.4
Q ss_pred CccccccccCCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc----
Q 000065 126 FPVLHLRRRNSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK---- 201 (2462)
Q Consensus 126 ~~~~~~~~~k~~w~p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r---- 201 (2462)
|.|.+....+..-..+.|+||+..|...+++..- .+.+|+.+...|- | .+-|-+. -|+.+-
T Consensus 8 F~V~~~~~~~~~~g~g~L~vt~~~L~l~~~~~~~--~~WPl~~LRRYG~----d-------~~~FsFE--AGRRC~tGeG 72 (102)
T cd01202 8 FRVINVDDDGNELGSGWLELTRTELTLYISGKEP--VVWPLLCLRRYGY----N-------SDLFSFE--SGRRCQTGEG 72 (102)
T ss_pred EEEEEECCCCCeeeeEEEEecceEEEEEcCCCCE--EEccHHHhHhhcc----C-------CCEEEEE--ccCcCCCCCC
Confidence 3444444334556689999999999999876544 4558888875332 2 2444442 344333
Q ss_pred ccccCCCCChHHHHHHHHHHHh
Q 000065 202 AFQAAPGTTNSAIVSSLTKTAK 223 (2462)
Q Consensus 202 ~~l~~~~~~~~~ii~~i~~~A~ 223 (2462)
+|.|.+. +.++|.+.+++.-+
T Consensus 73 ~f~F~t~-~~~~if~~v~~~I~ 93 (102)
T cd01202 73 IFAFRCK-RAEELFNLLQSYIQ 93 (102)
T ss_pred EEEEEcC-CHHHHHHHHHHHHH
Confidence 7888884 88888888876533
No 139
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=25.40 E-value=2.3e+02 Score=40.51 Aligned_cols=128 Identities=13% Similarity=0.113 Sum_probs=79.4
Q ss_pred hhhHHhhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhhhhcccchhcccchhhHHHHHHhhcCCCChhHHHH
Q 000065 526 VGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHATMMHTKSVLFSQQGYLIVLVNRLRPMSVSPLLSM 605 (2462)
Q Consensus 526 ~~~v~~~L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~~~~~nKs~ll~~~~~~~~L~~~l~~~~~~alv~~ 605 (2462)
++-+..++.-.+-+|+.-|+.+|+.|+...|.- .+..+..++..++.+++.--.-....+
T Consensus 695 L~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~--------------------l~~~~~~iL~~ii~ll~Spllqg~al~ 754 (1233)
T KOG1824|consen 695 LVELPPLISESDLHVTQLAVAFLTTLAIIQPSS--------------------LLKISNPILDEIIRLLRSPLLQGGALS 754 (1233)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHH--------------------HHHHhhhhHHHHHHHhhCccccchHHH
Confidence 345566666777788888999998888643322 233556788999999997333345678
Q ss_pred HHHHHHHhhccCCCCCCCChHHHHHHHHHHHhhhhHHH--HhhCCCchhHHhHHHHHHHHHHhhcHHHHHHHHH
Q 000065 606 AVVEVLETMICEPHSETTQYTVFVELLRQVAGLRRRLF--ALFGHPAESVRETVAVIMRTIAEEDAIAAESMRD 677 (2462)
Q Consensus 606 a~l~~l~~~lC~P~seTT~~~~f~~ll~~va~~gr~lf--~Lf~hp~~~i~~~aglimrai~Ee~~~~a~~mq~ 677 (2462)
++++||++++ ++.+++-. |..++..+.+---.-- -|-.|--.+|.+-|+.|..+-=++....|.+|-.
T Consensus 755 ~~l~~f~alV---~t~~~~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~ 824 (1233)
T KOG1824|consen 755 ALLLFFQALV---ITKEPDLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQ 824 (1233)
T ss_pred HHHHHHHHHH---hcCCCCcc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 9999999999 77777765 7766655521100000 1222222456677777766655555555555433
No 140
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=25.35 E-value=1.3e+02 Score=31.37 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=47.2
Q ss_pred cccEEEEEecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeehh
Q 000065 35 RYKRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSSR 103 (2462)
Q Consensus 35 kYkRIf~Ig~~~i~T~nP~tl~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~K~~~mkFss~ 103 (2462)
.-+..+-|++.||..|+.++ ..|.++| ++|..++-. ...|+|.++... ++..++.|.+.
T Consensus 14 g~~~~lGV~~~Gi~v~~~~~--~~~~f~W-~~I~~isf~------~k~F~i~~~~~~-~~~~~~~f~~~ 72 (92)
T cd00836 14 GTELLLGVTAEGILVYDDGT--PINEFPW-PEIRKISFK------RKKFTLKVRDKD-GQEITLSFQTP 72 (92)
T ss_pred CCeEEEEEeCCCcEEecCCC--EEEEEEc-ccceEEEEc------CCEEEEEEecCc-CceeeEEEECC
Confidence 35677899999999999887 7899999 799888873 359999998652 45677888764
No 141
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.34 E-value=78 Score=34.42 Aligned_cols=84 Identities=15% Similarity=0.216 Sum_probs=59.6
Q ss_pred EEEEe-eccc--ccccEEEEEecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeee
Q 000065 25 YLVVK-HSWR--GRYKRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFS 101 (2462)
Q Consensus 25 y~vtK-hSWr--gkYkRIf~Ig~~~i~T~nP~tl~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~~~K~~~mkFs 101 (2462)
.|.|| -|.- ++|-+|+ ||..|+--||-.+.+--=|-+| +.+.-|..++...+-.-+|.|-+.+. .+.+|+
T Consensus 10 ~~~t~gtaYlg~~~~Gkil-iGDkgfEFYn~~nv~k~iqipW-s~i~~v~vsvs~KK~~~~f~i~td~~-----gk~~Fa 82 (122)
T COG4687 10 DYSTKGTAYLGFAEYGKIL-IGDKGFEFYNDRNVEKFIQIPW-SEINEVDVSVSLKKWGRQFSIFTDTQ-----GKVRFA 82 (122)
T ss_pred EEEecceEEeehhhcCeEE-EcccceeecCCCChhheeEecH-HHhheeheeehhhhhcceEEEEEcCC-----ceEEEE
Confidence 56666 4443 3788887 8999999999888876667777 56655444332334556999997764 339999
Q ss_pred hhhhhHHHHHHHHh
Q 000065 102 SRFRASILTELHRI 115 (2462)
Q Consensus 102 s~~Ra~lLT~l~r~ 115 (2462)
|..-..+|.-.-.+
T Consensus 83 Skdsg~iLk~ir~y 96 (122)
T COG4687 83 SKDSGKILKKIREY 96 (122)
T ss_pred eCCchhHHHHHHHH
Confidence 99999988765444
No 142
>KOG1862 consensus GYF domain containing proteins [General function prediction only]
Probab=24.84 E-value=66 Score=45.06 Aligned_cols=41 Identities=12% Similarity=0.309 Sum_probs=36.7
Q ss_pred CCcceeEeecCCCcccccccHHHHHHHHhcCCcCcCCceec
Q 000065 1169 EPFKEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWA 1209 (2462)
Q Consensus 1169 ~~~KEWyy~~~~g~~~GPvs~~eLk~l~~~g~I~~~T~~Wa 1209 (2462)
..++.|||.+.+|+..|||+..+|..-|..|....+..+|-
T Consensus 201 ~~d~~~~Y~DP~g~iqGPf~~~~v~~W~~~GyF~~~l~vr~ 241 (673)
T KOG1862|consen 201 DEELSWLYKDPQGQIQGPFSASDVLQWYEAGYFPDDLQVRL 241 (673)
T ss_pred CcceeEEeeCCCCcccCCchHHHHHHHHhcCccCCCceeee
Confidence 45789999999999999999999999999999888866654
No 143
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=23.65 E-value=1.3e+03 Score=29.16 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHh----cHHhhHhhhcchhhhhhHHhhh-ccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhhh
Q 000065 498 TVMGFVACLRRLLT----SRTAASHVMSFPAAVGRIMGLL-RNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHAT 572 (2462)
Q Consensus 498 ~~~~~~~aLrRL~a----s~~gf~~~~~~p~~~~~v~~~L-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~~ 572 (2462)
.+...+..|+=++= ||.-|+.-. .+..++.+| ..+...|..+++++|.++|- |...
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~----~m~lll~LL~~~~~~~i~~a~L~tLv~iLl----------d~p~----- 167 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQ----NMELLLDLLSPSNPPAIQSACLDTLVCILL----------DSPE----- 167 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhh----hHHHHHHHhccCCCchHHHHHHHHHHHHHH----------cChH-----
Confidence 44445566665553 444444322 666788999 56677899999999888874 1111
Q ss_pred hcccchhcccchhhHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 000065 573 MMHTKSVLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMI 615 (2462)
Q Consensus 573 ~~~nKs~ll~~~~~~~~L~~~l~~~~~~alv~~a~l~~l~~~l 615 (2462)
|- ..|-.-+.++.+..+++..++.--|=+-++|||.|-+
T Consensus 168 ---N~-r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 168 ---NQ-RDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred ---HH-HHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHH
Confidence 22 5666677899999999999998899999999999876
No 144
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=20.64 E-value=2.9e+02 Score=30.98 Aligned_cols=92 Identities=9% Similarity=0.103 Sum_probs=56.9
Q ss_pred hHHHHHHHHhhhhhcccccCCccccccccCCcccceEEEEeeceEEEecCCC-CceEEEeeccCCCccceeeeccccCCC
Q 000065 106 ASILTELHRIRWVRLNAVAEFPVLHLRRRNSEWVPYKLKVTYVGVELTDLRS-GDLRWCLDFRDMDSPAIVLLSDAYGKR 184 (2462)
Q Consensus 106 a~lLT~l~r~r~~~~~~~~~~~~~~~~~~k~~w~p~~L~Vt~~~leq~d~~~-g~~~~~y~y~d~~~~~i~~l~d~~~~~ 184 (2462)
.++|-++.+--. -+..+..|-||.+.|+|++|-.+|+++ .++++-..-|.+. |.-+ |+
T Consensus 20 mdvln~AI~~l~-------------~~~~~~~w~~V~vsvaps~v~v~~~~~~~~~l~ecrVr~lS---F~Gv----gK- 78 (124)
T cd01271 20 MEILNSAIDNLM-------------SSSNKEDWLSVNVNVAPSTITVISEKNEEEVLVECRVRYLS---FLGI----GK- 78 (124)
T ss_pred HHHHHHHHHHHH-------------hcCCcccCceEEEEeCCceEEEEccCccceeeeeeeEEEec---cccC----CC-
Confidence 467777766431 022467999999999999999999864 4677776655554 3321 21
Q ss_pred CCCCcEEEeeccCCCcc--ccccCCCCChHHHHHHHHH
Q 000065 185 SETGGFVLCPLYGRKSK--AFQAAPGTTNSAIVSSLTK 220 (2462)
Q Consensus 185 ~~~~gfvl~~~~g~~~r--~~l~~~~~~~~~ii~~i~~ 220 (2462)
+ .-.|++..-.| ..| -|.|.|+.+-.++-+.+.+
T Consensus 79 d-~k~fafI~~~~-~~~f~ChVF~ce~~A~~ls~av~a 114 (124)
T cd01271 79 D-VHTCAFIMDTG-NQRFECHVFWCEPNAGNVSKAVEA 114 (124)
T ss_pred C-ccEEEEEEecC-CCcEEEEEEEecCChHHHHHHHHH
Confidence 2 23555432233 222 5788888666666666643
No 145
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like).
Probab=20.39 E-value=2.9e+02 Score=29.85 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=47.1
Q ss_pred ceEEEEeeceEEEecCCCCceEEEeeccCCCccceeeeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCChHHHH
Q 000065 140 PYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTNSAIV 215 (2462)
Q Consensus 140 p~~L~Vt~~~leq~d~~~g~~~~~y~y~d~~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r----~~l~~~~~~~~~ii 215 (2462)
++.|++|+..|..+|.+++.++.+.+|+.|...|- | .+-|-+ --|+.+- .|-|.+ ...++|.
T Consensus 21 ~y~L~lt~~~L~L~~~~~~~~~~~wpl~~lRRyG~----~-------~~~Fsf--EaGRrc~tG~G~f~f~t-~~a~~i~ 86 (98)
T smart00310 21 SYRLRLTSETLVLWRLNPRVELVVWPLLSLRRYGR----D-------KNFFFF--EAGRRCVSGPGEFTFQT-VVAQEIF 86 (98)
T ss_pred eEEEEECCcEEEEEecCCCccEEEeehhHeeeecC----C-------CCEEEE--EccCcCCCCCCEEEEEc-CcHHHHH
Confidence 79999999999999987788888999999984332 2 234433 2454333 566665 3666777
Q ss_pred HHHHHH
Q 000065 216 SSLTKT 221 (2462)
Q Consensus 216 ~~i~~~ 221 (2462)
+.|.++
T Consensus 87 ~~v~~a 92 (98)
T smart00310 87 QLVLEA 92 (98)
T ss_pred HHHHHH
Confidence 777544
No 146
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=20.28 E-value=79 Score=41.34 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhhcHHHHHHhCCchHHHHHHHhh
Q 000065 1112 RLLLLLKVLMKVLANIEACVLVGGCVLAVDLLTVV 1146 (2462)
Q Consensus 1112 ~lll~~~~L~~~~~N~~~~v~~~G~~llvdLltla 1146 (2462)
.+..|+.+++.+..+.+.||+.||+..|+||+++=
T Consensus 339 ~v~rFLea~fsN~~~C~~FVe~GGie~LLdLl~LP 373 (379)
T PF06025_consen 339 NVVRFLEAFFSNSDHCREFVEKGGIELLLDLLTLP 373 (379)
T ss_pred HHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC
Confidence 55668899999999999999999999999999753
No 147
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=20.06 E-value=1.6e+02 Score=35.19 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhhc
Q 000065 1538 ENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQA 1580 (2462)
Q Consensus 1538 ~~a~e~~IKkAYRkLa~k~HPDKnp~a~ekF~~I~~AYEvLsd 1580 (2462)
++|+.+||++|+.++..+|-- .++.-++|-.|||.+-=
T Consensus 2 ~~ASfeEIq~Arn~ll~~y~g-----d~~~~~~IEaAYD~ILM 39 (194)
T PF11833_consen 2 EDASFEEIQAARNRLLAQYAG-----DEKSREAIEAAYDAILM 39 (194)
T ss_pred CCCCHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHH
Confidence 589999999999999999833 36678899999998654
Done!