Query 000067
Match_columns 2445
No_of_seqs 356 out of 1591
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 16:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1080 Histone H3 (Lys4) meth 100.0 4.1E-70 8.9E-75 692.0 16.1 954 716-2040 46-1004(1005)
2 KOG4442 Clathrin coat binding 100.0 5.7E-39 1.2E-43 390.1 13.0 169 1851-2046 94-265 (729)
3 KOG1082 Histone H3 (Lys9) meth 100.0 2.7E-28 5.9E-33 289.0 12.4 262 1742-2040 56-353 (364)
4 KOG1079 Transcriptional repres 99.8 2.2E-21 4.8E-26 236.7 10.1 178 1815-2020 519-714 (739)
5 KOG1083 Putative transcription 99.8 2.1E-21 4.6E-26 242.7 4.1 125 1877-2019 1174-1298(1306)
6 smart00317 SET SET (Su(var)3-9 99.8 7.3E-20 1.6E-24 178.1 13.2 114 1884-2014 3-116 (116)
7 KOG1141 Predicted histone meth 99.8 5.7E-19 1.2E-23 216.5 9.5 188 1851-2041 981-1262(1262)
8 KOG1085 Predicted methyltransf 99.6 1.9E-15 4.1E-20 172.0 9.2 116 1888-2017 263-379 (392)
9 COG2940 Proteins containing SE 99.5 9.8E-15 2.1E-19 179.5 3.5 142 1882-2040 333-479 (480)
10 PF00856 SET: SET domain; Int 99.3 1.4E-12 3E-17 131.5 6.4 54 1962-2015 109-162 (162)
11 KOG1081 Transcription factor N 98.8 1.5E-09 3.3E-14 134.1 1.7 121 1896-2043 319-439 (463)
12 KOG2589 Histone tail methylase 98.6 2.6E-08 5.6E-13 118.0 5.4 120 1890-2038 136-255 (453)
13 PF14237 DUF4339: Domain of un 97.5 0.0001 2.3E-09 65.6 3.5 45 1045-1090 1-45 (45)
14 KOG2461 Transcription factor B 97.0 0.0007 1.5E-08 83.7 5.2 104 1890-2019 39-147 (396)
15 KOG1141 Predicted histone meth 96.9 0.00024 5.2E-09 90.9 0.5 60 1851-1919 774-835 (1262)
16 PF02213 GYF: GYF domain; Int 95.7 0.006 1.3E-07 57.1 2.3 48 1045-1092 2-53 (57)
17 cd00072 GYF GYF domain: contai 95.5 0.016 3.5E-07 54.8 4.1 50 1045-1094 3-53 (57)
18 KOG4676 Splicing factor, argin 95.4 0.015 3.4E-07 71.1 4.9 9 64-72 30-38 (479)
19 PF12937 F-box-like: F-box-lik 94.7 0.017 3.7E-07 51.3 1.8 41 1255-1297 1-44 (47)
20 KOG4368 Predicted RNA binding 94.5 0.048 1E-06 69.3 5.6 14 365-378 562-575 (757)
21 KOG0147 Transcriptional coacti 93.7 0.12 2.6E-06 65.9 6.9 22 617-638 272-294 (549)
22 PF14237 DUF4339: Domain of un 92.4 0.091 2E-06 47.2 2.4 44 642-686 1-44 (45)
23 KOG4368 Predicted RNA binding 92.1 0.16 3.5E-06 64.8 4.8 12 12-23 275-286 (757)
24 cd00072 GYF GYF domain: contai 91.8 0.13 2.9E-06 48.8 2.8 48 642-689 3-51 (57)
25 KOG0147 Transcriptional coacti 90.5 0.44 9.6E-06 61.1 6.4 18 711-728 252-269 (549)
26 smart00508 PostSET Cysteine-ri 90.2 0.14 3.1E-06 42.4 1.3 15 2026-2040 2-16 (26)
27 KOG2146 Splicing coactivator S 90.1 1.6 3.6E-05 52.6 10.2 8 428-435 220-227 (354)
28 KOG0670 U4/U6-associated splic 89.9 0.93 2E-05 58.4 8.4 27 764-790 520-546 (752)
29 PF02213 GYF: GYF domain; Int 89.3 0.23 5.1E-06 46.7 2.1 43 642-684 2-44 (57)
30 KOG2548 SWAP mRNA splicing reg 89.1 0.28 6.1E-06 62.3 3.2 10 85-94 126-135 (653)
31 smart00444 GYF Contains conser 88.8 0.46 9.9E-06 45.1 3.7 40 1045-1084 2-41 (56)
32 KOG1847 mRNA splicing factor [ 88.5 0.55 1.2E-05 60.8 5.2 7 550-556 817-823 (878)
33 KOG3794 CBF1-interacting corep 86.2 0.74 1.6E-05 57.3 4.3 16 318-333 251-266 (453)
34 KOG0670 U4/U6-associated splic 86.1 1.9 4E-05 55.9 7.7 75 1009-1089 483-570 (752)
35 TIGR01622 SF-CC1 splicing fact 84.5 1.1 2.4E-05 55.9 4.8 11 556-566 131-141 (457)
36 TIGR01642 U2AF_lg U2 snRNP aux 84.4 3 6.6E-05 52.7 8.6 12 1080-1091 443-454 (509)
37 smart00256 FBOX A Receptor for 84.3 0.79 1.7E-05 38.7 2.4 32 1259-1292 2-33 (41)
38 KOG4246 Predicted DNA-binding 83.7 1.2 2.6E-05 59.2 4.7 9 869-877 550-558 (1194)
39 cd05529 Bromo_WDR9_I_like Brom 83.5 2.5 5.3E-05 45.9 6.3 60 1483-1544 27-108 (128)
40 KOG2997 F-box protein FBX9 [Ge 82.9 0.87 1.9E-05 55.9 2.9 40 1253-1292 105-147 (366)
41 KOG3794 CBF1-interacting corep 82.8 1 2.2E-05 56.1 3.5 9 491-499 416-424 (453)
42 PF05033 Pre-SET: Pre-SET moti 82.5 0.83 1.8E-05 46.7 2.2 94 1752-1866 5-103 (103)
43 KOG0415 Predicted peptidyl pro 81.7 0.49 1.1E-05 58.1 0.3 37 403-439 430-466 (479)
44 PF00646 F-box: F-box domain; 78.8 1.1 2.4E-05 39.6 1.5 36 1255-1292 3-38 (48)
45 KOG2084 Predicted histone tail 78.5 3.5 7.6E-05 50.9 6.2 43 1974-2020 208-251 (482)
46 KOG4341 F-box protein containi 77.8 1.1 2.4E-05 56.6 1.7 115 1247-1370 65-209 (483)
47 TIGR01622 SF-CC1 splicing fact 77.2 2.2 4.7E-05 53.4 3.9 13 1060-1072 381-393 (457)
48 cd05512 Bromo_brd1_like Bromod 77.1 6 0.00013 41.3 6.4 74 1481-1566 2-93 (98)
49 cd05513 Bromo_brd7_like Bromod 75.0 7.3 0.00016 40.8 6.4 72 1482-1565 3-92 (98)
50 KOG4246 Predicted DNA-binding 74.2 2.2 4.9E-05 56.8 2.9 14 500-513 387-400 (1194)
51 KOG0835 Cyclin L [General func 73.5 7.3 0.00016 48.4 6.7 15 222-237 203-219 (367)
52 PF15440 THRAP3_BCLAF1: THRAP3 72.6 9.7 0.00021 51.1 8.2 21 1150-1174 487-507 (646)
53 smart00444 GYF Contains conser 70.6 3.8 8.2E-05 39.1 2.8 43 642-684 2-44 (56)
54 KOG4207 Predicted splicing fac 70.3 21 0.00045 42.4 9.0 8 452-459 168-175 (256)
55 KOG1947 Leucine rich repeat pr 64.9 7.4 0.00016 47.6 4.6 64 1300-1366 247-310 (482)
56 cd05511 Bromo_TFIID Bromodomai 63.4 16 0.00034 39.1 6.0 57 1485-1543 5-79 (112)
57 KOG0151 Predicted splicing reg 63.4 6 0.00013 52.6 3.5 9 219-227 664-673 (877)
58 PF00439 Bromodomain: Bromodom 62.5 6.9 0.00015 38.2 3.0 38 1505-1544 39-76 (84)
59 KOG3263 Nucleic acid binding p 60.8 2.2 4.7E-05 48.7 -0.8 17 609-626 137-153 (196)
60 smart00297 BROMO bromo domain. 59.3 25 0.00055 35.9 6.5 65 1477-1543 4-86 (107)
61 cd04369 Bromodomain Bromodomai 58.0 21 0.00046 34.8 5.5 37 1505-1543 45-81 (99)
62 cd05500 Bromo_BDF1_2_I Bromodo 57.4 28 0.0006 36.4 6.5 60 1482-1543 6-85 (103)
63 cd05497 Bromo_Brdt_I_like Brom 56.1 33 0.00071 36.5 6.8 73 1481-1565 6-98 (107)
64 cd05528 Bromo_AAA Bromodomain; 56.0 29 0.00062 37.3 6.4 75 1482-1564 5-97 (112)
65 KOG1337 N-methyltransferase [G 56.0 7.4 0.00016 49.9 2.6 40 1974-2016 239-278 (472)
66 cd05507 Bromo_brd8_like Bromod 54.8 29 0.00062 36.6 6.1 60 1480-1541 3-80 (104)
67 PF15440 THRAP3_BCLAF1: THRAP3 52.1 90 0.002 42.5 11.4 25 1141-1167 490-515 (646)
68 cd05505 Bromo_WSTF_like Bromod 49.5 41 0.00088 35.3 6.2 71 1483-1565 3-91 (97)
69 KOG1869 Splicing coactivator S 48.9 42 0.0009 42.8 7.1 8 387-394 242-249 (425)
70 cd05504 Bromo_Acf1_like Bromod 48.0 38 0.00083 36.4 5.9 61 1482-1544 14-92 (115)
71 cd05503 Bromo_BAZ2A_B_like Bro 47.5 42 0.00092 34.9 5.9 59 1483-1543 3-79 (97)
72 KOG3263 Nucleic acid binding p 45.9 5 0.00011 45.9 -1.0 13 497-509 77-89 (196)
73 cd05510 Bromo_SPT7_like Bromod 42.6 56 0.0012 35.2 6.1 34 1506-1541 52-85 (112)
74 cd05495 Bromo_cbp_like Bromodo 41.8 70 0.0015 34.1 6.6 59 1483-1543 6-85 (108)
75 KOG0415 Predicted peptidyl pro 41.7 8.5 0.00018 48.0 -0.1 18 479-496 450-467 (479)
76 KOG1947 Leucine rich repeat pr 39.0 46 0.001 40.9 5.5 109 1254-1363 167-281 (482)
77 smart00466 SRA SET and RING fi 38.9 7.7 0.00017 43.9 -0.9 24 1695-1718 122-150 (155)
78 cd05491 Bromo_TBP7_like Bromod 35.8 27 0.00059 38.4 2.6 38 1500-1539 62-99 (119)
79 KOG4341 F-box protein containi 35.5 28 0.00061 45.0 3.0 60 1310-1369 252-338 (483)
80 smart00468 PreSET N-terminal t 33.4 28 0.00062 35.8 2.2 45 1752-1798 7-56 (98)
81 PF05663 DUF809: Protein of un 33.0 23 0.00049 37.8 1.4 12 169-180 101-112 (138)
82 cd05508 Bromo_RACK7 Bromodomai 32.8 1.1E+02 0.0024 32.4 6.3 36 1506-1543 46-81 (99)
83 PF00560 LRR_1: Leucine Rich R 32.1 31 0.00067 27.2 1.7 21 1352-1373 1-21 (22)
84 PF14878 DLD: Death-like domai 31.8 47 0.001 36.5 3.5 87 2098-2198 15-108 (115)
85 PF12799 LRR_4: Leucine Rich r 30.7 45 0.00097 30.3 2.7 38 1326-1367 2-39 (44)
86 KOG3864 Uncharacterized conser 30.6 37 0.0008 40.6 2.7 56 1310-1365 108-165 (221)
87 PF01473 CW_binding_1: Putativ 29.5 32 0.00069 26.5 1.3 11 1044-1054 8-18 (19)
88 cd05525 Bromo_ASH1 Bromodomain 28.6 71 0.0015 34.1 4.2 38 1505-1544 51-88 (106)
89 cd05509 Bromo_gcn5_like Bromod 28.5 1.1E+02 0.0024 31.8 5.5 59 1483-1543 4-80 (101)
90 cd05499 Bromo_BDF1_2_II Bromod 27.9 1.4E+02 0.0031 31.2 6.2 60 1483-1544 3-85 (102)
91 cd05498 Bromo_Brdt_II_like Bro 26.4 84 0.0018 32.7 4.2 37 1505-1543 48-84 (102)
92 cd05506 Bromo_plant1 Bromodoma 26.0 1.8E+02 0.0039 30.2 6.4 56 1486-1543 6-81 (99)
93 KOG1862 GYF domain containing 25.8 75 0.0016 43.2 4.7 54 642-695 205-261 (673)
94 PF13855 LRR_8: Leucine rich r 25.2 47 0.001 30.9 1.9 49 1351-1400 1-54 (61)
95 PF05663 DUF809: Protein of un 25.1 33 0.00072 36.6 1.0 26 164-189 108-136 (138)
96 KOG1869 Splicing coactivator S 25.1 2.2E+02 0.0048 36.9 7.9 18 515-532 380-397 (425)
97 KOG1081 Transcription factor N 24.6 27 0.00058 45.5 0.3 130 1895-2042 130-265 (463)
98 PF02792 Mago_nashi: Mago nash 23.4 46 0.001 37.6 1.8 23 1264-1287 116-138 (143)
99 KOG0120 Splicing factor U2AF, 22.1 1.1E+02 0.0023 40.7 4.8 22 771-792 411-432 (500)
100 cd05515 Bromo_polybromo_V Brom 21.2 1.3E+02 0.0028 32.0 4.4 37 1505-1543 49-85 (105)
101 cd05518 Bromo_polybromo_IV Bro 20.8 1.3E+02 0.0029 32.0 4.4 48 1505-1564 49-96 (103)
102 KOG0132 RNA polymerase II C-te 20.5 1.2E+02 0.0026 41.9 4.7 11 196-206 116-126 (894)
No 1
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.1e-70 Score=691.99 Aligned_cols=954 Identities=27% Similarity=0.264 Sum_probs=703.0
Q ss_pred CCCchhhhhhccccccCCCCccccccccCCCCc-ccccccccccchhHHHHhhhccccccCCchhHHHHHHHhhcccccc
Q 000067 716 ASGNLLADTGDTAQSTGEEFPVTLQSQCCPDGS-AAAAESSEDLHIDVRVGALLDGFTVIPGKEIETLGEILQTTFERVD 794 (2445)
Q Consensus 716 a~gn~l~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~e~~e~~~id~rv~~l~~g~~~~~g~e~e~~~~~l~~~~~~~~ 794 (2445)
-|+|++-+...+.++-. .+...-+.+|.+-. .++....+++.++.|+..+..+-...++.|++..++.+...=....
T Consensus 46 ~~~n~~~~~~~~~vp~~--t~~~~~~sv~~~t~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~ke~~~~~~~~~~~~~~~k 123 (1005)
T KOG1080|consen 46 QPCNSVPELLTSSVPSL--TSKEESQSVCSDTSKKSSRGRVRAVPSRFRDSNVGTWRSSTPSKEFETEGEILKVNSEFEE 123 (1005)
T ss_pred ccccccccccccCCCCC--CCCCcceeeeecCCCccccCCcccccccccccccccCCcccccccccCcceeeecccccCC
Confidence 35566555554443310 01111233455555 8888999999999999999999999999999998887755411100
Q ss_pred ccCCCCCCCcccccCCCCCCCCccccccccccccccccccCCCCCCCcc-ccCCCCCcccccccccCCCcccCChhhhcc
Q 000067 795 WQNNGGPTWHGACVGEQKPGDQKVDELYISDTKMKEAAELKSGDKDHWV-VCFDSDEWFSGRWSCKGGDWKRNDEAAQDR 873 (2445)
Q Consensus 795 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~wfs~~ws~kggdw~r~d~~~qd~ 873 (2445)
....+.....+ ....-++-.+ +.+.++. |+| ++-++.+|+|
T Consensus 124 --------------------------~~~s~~~~~~~--~~~~s~~~~~~~~~~ss~-----~~~-----~~~~~~s~~~ 165 (1005)
T KOG1080|consen 124 --------------------------VKVSSGSSKLH--PSKDSKVFPRKDNPDSSE-----VSC-----IDYWEASQDR 165 (1005)
T ss_pred --------------------------ceeccCccccC--cccccccCCcCCCCcccc-----cch-----hhhhhcccCc
Confidence 00000000000 0000000000 0111221 889 8888899999
Q ss_pred cccceEEecCCcccccCCCCCCCCCCcccCCCccccCCCCCCCCCCccccCCCcCCCCCCCCCccccccccccccccccc
Q 000067 874 CSRKKQVLNDGFPLCQMPKSGYEDPRWNQKDDLYYPSHSRRLDLPPWAYACPDERNDGSGGSRSTQSKLAAVRGVKGTML 953 (2445)
Q Consensus 874 ~~~~k~vln~g~~lc~~~k~~~edpr~~~~d~ly~~~~~~~~dlp~wa~~~~~e~~~~~~~~~~~~~~~~~~~gvkg~~l 953 (2445)
+. .+|+|+|+|||.+++..++.+.|+.+.+++++..+.+...+.||+..-++++ .++||+.+-+
T Consensus 166 ~~--~i~~~~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~d~~~~--------------~~~~v~as~~ 229 (1005)
T KOG1080|consen 166 YD--EIVANDGMPLKSDASSKGVYKPEEFTVGDLVWAKSGRNEPPWPAIVIDPIRQ--------------APRGVLASCL 229 (1005)
T ss_pred cc--ceeeccCCcCcccccccccccCcccccchhhhcccccCCcccccceeehhhc--------------chhhhhccCc
Confidence 99 9999999999999999999999999999999999999999999998755542 6799999988
Q ss_pred eeEeeeeeEecCCCCccccCccccccCcCCCCCccCcccccccccccccccccccccccCCCCCCcccccccccCCCCcc
Q 000067 954 PVVRINACVVNDHGSFVSEPRSKVRAKERHSSRSARSYSSANDVRRSSAESDSHSKARNNQDSQGSWKSIACINTPKDRL 1033 (2445)
Q Consensus 954 ~vvr~n~~vv~d~~~~~~e~~~k~~~~~r~~~r~~r~~~~~~~~~~~~~e~~s~sk~~~~~~~~~~~~~~~~~~~p~d~~ 1033 (2445)
|+|.-+..|.+.+...-.....+.++..+++++..+.+.-..+..+-.....+|+-+..-+..|++|+-.
T Consensus 230 ~~~~~~~~~~~s~~~~~~~~~~~r~~m~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~---------- 299 (1005)
T KOG1080|consen 230 PVAACVMFFGNSGVPTERDYAWVRRGMERPFSRPVRPFQDQTELKREKARSFEQALEEAGLAEQGNWKKD---------- 299 (1005)
T ss_pred chhhhheeeeccCCccccchhhhhhccccccchhhhhccccccccccCccchhHHHHHhhcccccccccc----------
Confidence 9888888888888776777888999999999999999999999888888888888888888999999976
Q ss_pred cccccccccccceEEecCCCCccCCCcHHHHHHHHhhcccccCcccccccCceeeecccccccccccccccCCccCCCCC
Q 000067 1034 CTVDDLQLQLGEWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFDKVWVPLTFATETSASTVRNHGEKIMPSGD 1113 (2445)
Q Consensus 1034 ct~~~lql~~GdWyYlDg~G~E~GP~sfseLQ~lv~~g~i~~~sSvfRK~D~~WvPv~~~~~~~~~~~~~~~~~~~~~~~ 1113 (2445)
+++++|+.|+|.+-|+++.|.||++|++++.++..|.+..+++||++.|+.|+|++.+.....-.++.......+.+.
T Consensus 300 --~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 377 (1005)
T KOG1080|consen 300 --VDDAHLITGDSSATDSALSEGGPSSFSELQKLHEKGFIKSHSSVFRKSDKIHVPSTSITKSPPPIAKSAKKTKALPPA 377 (1005)
T ss_pred --ccchhhhcCCCccchhhhhccccccccccccccccCCccccccccCCCccccccccccccCCCCchhhccccCccccc
Confidence 899999999999999999999999999999999999999999999999999999999988865444444444444444
Q ss_pred CCCCCCccccccccccccCCcCCccccccccceeeeccchhHHHHHHHhcChHHHHHHHhhhccccccCCChhhhhh-hh
Q 000067 1114 SSGLPPTQSQDAVLGESNNNVNSNAFHTMHPQFIGYTRGKLHELVMKSYKNREFAAAINEVLDPWINAKQPKKETEH-VY 1192 (2445)
Q Consensus 1114 ~s~~~~~~~~~~~~~~~~~~~~s~~fh~~hpqf~gytrGkLHelvMKs~k~refaa~inevld~Wi~~kqp~ke~~~-~~ 1192 (2445)
.++...-++.-.+.... .+-..|+.-|+++.+| +++++-|+||.+.+++.+-++ .+
T Consensus 378 -~~l~~k~~~~~~~s~~~--~g~~~~~~~~~~~~d~--------------------~~~~~c~~~~~~~~~~~~~~~~~~ 434 (1005)
T KOG1080|consen 378 -QGLLCKECSDETKSNQT--CGICKRIWHSSDSGDW--------------------VRCDGCDVWIHARCDKISSEKFKY 434 (1005)
T ss_pred -chhhhhhhhchhhcccc--ccccceecccccccce--------------------eeecccccceeeccCccccccccc
Confidence 33233333333322222 4556799999999999 789999999999998877663 22
Q ss_pred hcCCCCccccccceeccccCCCCccchhhhh-cc-cCcchhhhhcCCCccCCCCccccccccCccccccchHHHHHHHHH
Q 000067 1193 RKSEGDTRAGKRARLLVRESDGDEETEEELQ-TI-QDESTFEDLCGDASFPGEESASSAIESGGWGLLDGHTLAHVFHFL 1270 (2445)
Q Consensus 1193 ~~s~~~~~~~~r~r~~~~~~~~d~~~~~~~~-~~-~~~~~fe~l~~~~~~~~~~~~~~~~~~~~w~ll~g~~lar~fh~l 1270 (2445)
..+... +.-=.+ .-.+.-...+ -. +...+|+++++|.+ +++|++|||.+
T Consensus 435 ~s~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~l~~d~~s~~~~--------------------~~~~~~~~~~~ 485 (1005)
T KOG1080|consen 435 SSSGMH----NYQTLN-----FPQEYTALNLSYCPKCKLTFDDLSTDLS--------------------PAALARVFHML 485 (1005)
T ss_pred cccccc----cccccc-----chhhhhhhhccccchhheecccccccCC--------------------cchheeeeccc
Confidence 211110 000000 0000001111 11 66777777777765 89999999999
Q ss_pred hhhhhhhHHhhcchhhHHHHHhhhcccceeeeccCCCCCchhHHHHHHHhhhcccccceeeecccccCChhHHHHHHHhC
Q 000067 1271 RSDMKSLAFASLTCRHWRAAVRFYKGISRQVDLSSVGPNCTDSLIRKTLNAFDKEKLNSILLVGCTNITSGMLEEILQSF 1350 (2445)
Q Consensus 1271 r~d~ksl~~~~~tc~~w~~a~~~yk~~~~~~~~ss~g~~ctd~~~~~~~~~y~~~~~~~~~l~gc~~~~~~~l~~~l~~~ 1350 (2445)
+.+++...+.+++||||-++..-++..+++.|....+|.|+++....+|++|...++.++++.+|+++...+|..+....
T Consensus 486 ~~~~~~k~~~~e~~k~~~~~~~~~k~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~s~~~~~~~s~~~~~~~~~~~~~ 565 (1005)
T KOG1080|consen 486 RYSVKKKKFLSEWERHTGATAKIWKDSSRVKDELLPLPKWVESRGRSIMNTYNSEKPKSIVLMGKTSVQRMLLELIEKRE 565 (1005)
T ss_pred CcchhhhhcccchhhhhcccccccccccccccccccchhhhhhccccccccccccCCcchhhhccchhhhhcCcccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEeeccccccccccccCCccceeecccccCcccCCcchhhchhhhhcccCCCCCCCCCCCCCCCCccchhhhhhcc
Q 000067 1351 PHLSSIDIRGCGQFGELALKFPNINWVKSQKSRGAKFNDSRSKIRSLKQITEKSSSAPKSKGLGDDMDDFGDLKDYFESV 1430 (2445)
Q Consensus 1351 p~~~~~~i~gc~q~~~l~~~f~~~~w~~~~~~~~~~~~~~~~k~~slk~~~~~~~~~~k~~~~~~~~~~~~~l~~yf~~v 1430 (2445)
|.|.-.++.+|.++.++++.-.||.|+.++-.+. -..+.+|+++.|++.+
T Consensus 566 ~~l~~~~t~~c~~~~~~~~~~~n~~~~~~~~~~~------------------------------~~s~~~g~~~~~~~~~ 615 (1005)
T KOG1080|consen 566 PRLSKWTTERCAVCRDDEDWEKNVSIICDRCTRS------------------------------VHSECYGNLKSYDGTS 615 (1005)
T ss_pred hhhcCCCcccccccccccccccceeeeecccccc------------------------------CCCcccccCCCCCCCc
Confidence 9999999999999999999999999999884411 1248899999999999
Q ss_pred ccccchhhhhhhhhhhccccccccccccccchhHHhhHhhhhhcchhhHHHHHHHHHHHHHHHHhcccccccchhHHHHh
Q 000067 1431 DKRDSANQSFRRSLYQRSKVFDARKSSSILSRDARMRRWSIKKSENGYKRMEEFLASSLKEIMRVNTFEFFVPKVAEIEG 1510 (2445)
Q Consensus 1431 ~~r~~a~~~f~~~~y~rsk~~dar~ss~~lsrda~~rr~~~~~~e~~y~~~e~f~~~~l~~im~~~~~dff~~kv~~ie~ 1510 (2445)
+..++++++ .|+|.+.+.+.++.++.++| +.|.|.+..+. .+||+++++-.+-+|+.+.|+|+--.+.+|=.
T Consensus 616 ~~~~~~~~~----~~~r~~~l~~~~g~al~p~d-~gr~~~~e~a~---~~~e~~~~~~~~~~p~~~~~~~p~~~~~~~~~ 687 (1005)
T KOG1080|consen 616 WVCDSCETL----DIKRSCCLCPVKGGALKPTD-EGRWVHVECAW---FRPEVCLASPERMEPAVGTFKIPALSFLKICF 687 (1005)
T ss_pred chhhccccc----cCCchhhhccccCcccCCCC-ccchhhhhchh---ccccccCCCccCCCCcccccccCccchhhhcc
Confidence 999999988 99999999999999999999 99999999998 89999999999999999999999888776532
Q ss_pred hhccccccccCCcchhhhHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHhhcccccchhhHHHHHhhcccCCCCcccc
Q 000067 1511 RMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGSAGDMNRITTLFIQLATRLEQGAKSSYYEREEMMKSWKDESPAGLYS 1590 (2445)
Q Consensus 1511 ~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1590 (2445)
- ||+-.--..+..+ .-.|..+-..+ ++.+.+|+.-.... -...+. +. ..-.
T Consensus 688 ~--------~~~~~~~~~~~~~------------~~~~~a~~~~~-~~~~~~l~~~~~~~---~~~~~~--~~---~~~d 738 (1005)
T KOG1080|consen 688 I--------HGSCRQCCKCETG------------SHAMCASRAGY-IMEAVSLEEVSQQT---TSYVKE--DG---PGPD 738 (1005)
T ss_pred c--------cccccccchhhhc------------ceehhhcCccC-hhhhhhhhhhhhhh---hhhhhh--cc---CCcc
Confidence 2 5543322222111 12333344445 44444444332111 111110 00 0001
Q ss_pred cchhhhhhhhhhhhhhhhccccCCCcccCCCCCcccccchHHHHHHhhhhcccccCCCCCCCcCCCCCCCCCCCCCcccc
Q 000067 1591 ATSKYKKKLSKMVSERKYMNRSNGTSLANGDFDYGEYASDREIRKRLSKLNRKSLDSGSETSDDLDGSSEDGKSDSESTV 1670 (2445)
Q Consensus 1591 ~~~k~kkk~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~kl~~~~~~s~s~~sd~~d~~~e~~~~~~~~~~ 1670 (2445)
.-++.-+...+-.+++..+++..+...+++-+++++++.++||++++..+|+.++.|+.-.. .+ ..++++...
T Consensus 739 ~~l~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~------~~-~r~~~~~~~ 811 (1005)
T KOG1080|consen 739 SVLKVNTPSGKFGAENLSQNKKSRTDGVRLVLTYKEYAPLREIKSRAEPLNRIDFSSEARCR------SE-SRSDNSKSP 811 (1005)
T ss_pred cceeecCccccccccchhhhhhccccccccccccccccccccchhcccCCcccCcccccccc------ch-hhccccccc
Confidence 22223233333345556666666666679999999999999999999999999888874332 22 277788888
Q ss_pred ccCCccccccccccccccCCCCCccCCCCcccccccccccccccccCCCCccceeeeEEeeeeccchHhHhhhcccccch
Q 000067 1671 SDTDSDMDFRSDGRARESRGAGDFTTDEGLDFSDDREWGARMTKASLVPPVTRKYEVIDQYVIVADEEDVRRKMRVSLPE 1750 (2445)
Q Consensus 1671 ~~~~sd~~~~~~~~~~~~~~~~~~~~~dgl~~i~~~~~G~~m~k~~lvP~~trky~vI~~y~iv~D~e~v~~km~v~lpd 1750 (2445)
.+++|+.|..+...........+++..+ | .=.++..+. .|+.++.+.|++.++.
T Consensus 812 ~~~~s~~~~~s~~~s~~~s~~~rl~q~r-------------l-----~a~~~~~~~--------~~~~~~~~~~~~~~rk 865 (1005)
T KOG1080|consen 812 LAEESESDITSGGSSHDLSAEERLNQFR-------------L-----SASFTASFI--------LDEAEVLRYNQLKFRK 865 (1005)
T ss_pred ccccccccccccccccchhHHhhhHHHH-------------h-----hhhcccccc--------cchHHHHHHHHHhhhh
Confidence 8888888888777766655444443211 0 000000000 3333333333332222
Q ss_pred hhhhhhccccCCCccccCCcccccccccccccCCcceeeeecCcCccccccccccCCCCcchhhhhhhhhHHHHHHHHHh
Q 000067 1751 DYAEKLNAQKNGSEELDMELPEVKDYKPRKQLGDQVFEQEVYGIDPYTHNLLLDSMPDELDWNLLEKHLFIEDVLLRTLN 1830 (2445)
Q Consensus 1751 ~~~Ekl~~~~ngtde~~~~~P~vK~YkprKvlG~DV~Eqe~~GcDcyTrn~L~~~lP~el~Ws~~qKhkFIek~LL~tLN 1830 (2445)
++
T Consensus 866 k~------------------------------------------------------------------------------ 867 (1005)
T KOG1080|consen 866 KY------------------------------------------------------------------------------ 867 (1005)
T ss_pred hh------------------------------------------------------------------------------
Confidence 20
Q ss_pred hhccccCCCCCCCCCCCCCCcccccCCcCccCCCchhhhcccccccccccCCCcceecCCccceEEeCccCCcCCCCEEE
Q 000067 1831 KQVRHFTGTGNTPMMYPLQPVIEEIEKEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVV 1910 (2445)
Q Consensus 1831 kqVR~f~GcG~tP~~c~ckPViECseC~CgeeC~NRllQ~C~~ilkai~r~PleVFrT~rKGwGVFAteDegIpKGEFI~ 1910 (2445)
+..-.+..+||||||... |.+|+||+
T Consensus 868 ----------------------------------------------------~~F~~s~iH~wglfa~~~--i~~~dmVi 893 (1005)
T KOG1080|consen 868 ----------------------------------------------------VKFGRSGIHGWGLFAMEN--IAAGDMVI 893 (1005)
T ss_pred ----------------------------------------------------hccccccccccceeeccC--ccccceEE
Confidence 011123467999999976 99999999
Q ss_pred EEecEEecchhhhhhhhhhHhhhcCCCCCCCCceeEeecCCCCCCCCCceEEEcCcccCCcccccCCCCCCCeEEEEEEE
Q 000067 1911 EFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAV 1990 (2445)
Q Consensus 1911 EYvGEVIt~eE~~ERqd~iRrlq~~skd~~~dFY~m~L~r~kgDa~Gyd~lVIDATrkGNiARFINHSCdPNCetq~v~V 1990 (2445)
||+||+|.+-=+..++. .|.+.+...- ||++.+. .+|||||.+||+||||||||+|||++.++.|
T Consensus 894 EY~Ge~vR~~iad~RE~------~Y~~~gi~~s---Ylfrid~------~~ViDAtk~gniAr~InHsC~PNCyakvi~V 958 (1005)
T KOG1080|consen 894 EYRGELVRSSIADLREA------RYERMGIGDS---YLFRIDD------EVVVDATKKGNIARFINHSCNPNCYAKVITV 958 (1005)
T ss_pred EeeceehhhhHHHHHHH------HHhccCcccc---eeeeccc------ceEEeccccCchhheeecccCCCceeeEEEe
Confidence 99999997633222221 1222233343 4555443 3899999999999999999999999999999
Q ss_pred CCEEEEEEEECCCCCCCCeEEEecCCCCCCcccccCeeEEeCCCCccccc
Q 000067 1991 DGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSY 2040 (2445)
Q Consensus 1991 dGe~RIafFAlRDIkaGEELTFDYG~~~eskee~~k~kClCGS~nCRGsy 2040 (2445)
+|+.+|+|||.|+|.+||||||||.|..+.. +.+|+|||++|||++
T Consensus 959 ~g~~~IvIyakr~I~~~EElTYDYkF~~e~~----kipClCgap~Crg~~ 1004 (1005)
T KOG1080|consen 959 EGDKRIVIYSKRDIAAGEELTYDYKFPTEDD----KIPCLCGAPNCRGFL 1004 (1005)
T ss_pred cCeeEEEEEEecccccCceeeeecccccccc----ccccccCCCcccccc
Confidence 9999999999999999999999999988643 699999999999943
No 2
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-39 Score=390.11 Aligned_cols=169 Identities=27% Similarity=0.458 Sum_probs=143.7
Q ss_pred ccccc--CCc-CccCCCchhhhcccccccccccCCCcceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhh
Q 000067 1851 VIEEI--EKE-AVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQD 1927 (2445)
Q Consensus 1851 ViECs--eC~-CgeeC~NRllQ~C~~ilkai~r~PleVFrT~rKGwGVFAteDegIpKGEFI~EYvGEVIt~eE~~ERqd 1927 (2445)
.+||. .|. |+..|.|.-.|.++. .++++|.|..|||||+|..+ |++|+||+||+||||+..++..+
T Consensus 94 ~iECs~~~C~~cg~~C~NQRFQkkqy-------A~vevF~Te~KG~GLRA~~d--I~~g~FI~EY~GEVI~~~Ef~kR-- 162 (729)
T KOG4442|consen 94 SIECSDRECPRCGVYCKNQRFQKKQY-------AKVEVFLTEKKGCGLRAEED--IPKGQFILEYIGEVIEEKEFEKR-- 162 (729)
T ss_pred hcccCCccCCCccccccchhhhhhcc-------CceeEEEecCcccceeeccc--cCCCcEEeeeccccccHHHHHHH--
Confidence 45664 354 677777766665433 47899999999999999998 99999999999999997665443
Q ss_pred hhHhhhcCCCCCCCCceeEeecCCCCCCCCCceEEEcCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEECCCCCCC
Q 000067 1928 GIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYG 2007 (2445)
Q Consensus 1928 ~iRrlq~~skd~~~dFY~m~L~r~kgDa~Gyd~lVIDATrkGNiARFINHSCdPNCetq~v~VdGe~RIafFAlRDIkaG 2007 (2445)
+..|..+...+||+|+|... .+||||.+||+||||||||+|||++++|.|.|.+||||||.|.|.+|
T Consensus 163 ----~~~Y~~d~~kh~Yfm~L~~~---------e~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~G 229 (729)
T KOG4442|consen 163 ----VKRYAKDGIKHYYFMALQGG---------EYIDATKKGNLARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPG 229 (729)
T ss_pred ----HHHHHhcCCceEEEEEecCC---------ceecccccCcHHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCC
Confidence 44566778899999998743 69999999999999999999999999999999999999999999999
Q ss_pred CeEEEecCCCCCCcccccCeeEEeCCCCcccccccCCCc
Q 000067 2008 EEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGE 2046 (2445)
Q Consensus 2008 EELTFDYG~~~eskee~~k~kClCGS~nCRGsyLg~~~e 2046 (2445)
|||||||+++.++. .+++|+||+++|+|||.+....
T Consensus 230 EEITFDYqf~rYGr---~AQ~CyCgeanC~G~IGgk~q~ 265 (729)
T KOG4442|consen 230 EEITFDYQFDRYGR---DAQPCYCGEANCRGWIGGKPQT 265 (729)
T ss_pred ceeeEecccccccc---cccccccCCcccccccCCCCcc
Confidence 99999999987654 5789999999999977666443
No 3
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=2.7e-28 Score=288.98 Aligned_cols=262 Identities=21% Similarity=0.194 Sum_probs=170.8
Q ss_pred hhcccccchh--hhhhhcc-ccCCCcc-cc--C-CcccccccccccccCCcceeeeecCcCcccccccccc--CCCCcch
Q 000067 1742 RKMRVSLPED--YAEKLNA-QKNGSEE-LD--M-ELPEVKDYKPRKQLGDQVFEQEVYGIDPYTHNLLLDS--MPDELDW 1812 (2445)
Q Consensus 1742 ~km~v~lpd~--~~Ekl~~-~~ngtde-~~--~-~~P~vK~YkprKvlG~DV~Eqe~~GcDcyTrn~L~~~--lP~el~W 1812 (2445)
.+++..++|. +.|.|++ +.|.+++ +. | ++++.+...+ ..-....+-||+|......... |+|
T Consensus 56 ~~~~~~~~d~~~~~e~~~v~~~n~id~~~~~~f~y~~~~~~~~~-----~~~~~~~~~~c~C~~~~~~~~~~~C~C---- 126 (364)
T KOG1082|consen 56 LEAKSELEDIALGSENLPVPLVNRIDEDAPLYFQYIATEIVDPG-----ELSDCENSTGCRCCSSCSSVLPLTCLC---- 126 (364)
T ss_pred cccccccccccCccccCceeeeeeccCCccccceeccccccCcc-----ccccCccccCCCccCCCCCCCCccccC----
Confidence 3444555554 7777777 7777763 22 4 4555444433 1233467788888875433222 222
Q ss_pred hhhhhhhhHHHHHHHHHhhhccccCCCCCC-CCCCCCCCccccc-CCcCccCCCchhhhcccccccccccCCCcceecCC
Q 000067 1813 NLLEKHLFIEDVLLRTLNKQVRHFTGTGNT-PMMYPLQPVIEEI-EKEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYR 1890 (2445)
Q Consensus 1813 s~~qKhkFIek~LL~tLNkqVR~f~GcG~t-P~~c~ckPViECs-eC~CgeeC~NRllQ~C~~ilkai~r~PleVFrT~r 1890 (2445)
..++.. ...+..++.. -....-.+++||. .|+|...|.||++|.+. +.+++||++..
T Consensus 127 --~~~n~~------------~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q~g~-------~~~leIfrt~~ 185 (364)
T KOG1082|consen 127 --ERHNGG------------LVAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVVQKGL-------QFHLEVFRTPE 185 (364)
T ss_pred --hHhhCC------------ccccccCCccccccccCccccccccCCCCCCcCcchhhcccc-------ccceEEEecCC
Confidence 222211 1111111110 1122234578995 69999999999999863 35899999999
Q ss_pred ccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCCceeEeecCCC-------------CCCCC
Q 000067 1891 KGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPK-------------GDADG 1957 (2445)
Q Consensus 1891 KGwGVFAteDegIpKGEFI~EYvGEVIt~eE~~ERqd~iRrlq~~skd~~~dFY~m~L~r~k-------------gDa~G 1957 (2445)
+||||++... |++|+|||||+||+++..++..+..... +..+ ...+|...+.... .....
T Consensus 186 kGwgvRs~~~--I~~G~fvcEyaGe~~t~~e~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (364)
T KOG1082|consen 186 KGWGVRTLDP--IPAGEFVCEYAGEVLTSEEAQRRTHLRE----YLDD-DCDAYSIADREWVDESPVGNTFVAPSLPGGP 258 (364)
T ss_pred ceeeeccccc--ccCCCeeEEEeeEecChHHhhhcccccc----cccc-ccccchhhhccccccccccccccccccccCC
Confidence 9999999987 9999999999999999876643321111 1111 0111211111000 00011
Q ss_pred CceEEEcCcccCCcccccCCCCCCCeEEEEEEECC----EEEEEEEECCCCCCCCeEEEecCCCCC----Ccc----ccc
Q 000067 1958 YDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDG----HYQIGIYTVRGIHYGEEITFDYNSVTE----SKE----EYE 2025 (2445)
Q Consensus 1958 yd~lVIDATrkGNiARFINHSCdPNCetq~v~VdG----e~RIafFAlRDIkaGEELTFDYG~~~e----ske----e~~ 2025 (2445)
...++|||...||+||||||||.||+.++.+..+. .++|+|||+++|.|||||||||+..+. ... ...
T Consensus 259 ~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~~~~~~~~~~~~~~~ 338 (364)
T KOG1082|consen 259 GRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYKLLVQDGANIYTPVM 338 (364)
T ss_pred CcceEEchhhcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccccccccccccccccccc
Confidence 24589999999999999999999999999988875 489999999999999999999996642 111 235
Q ss_pred CeeEEeCCCCccccc
Q 000067 2026 ASVCLCGSQVCRGSY 2040 (2445)
Q Consensus 2026 k~kClCGS~nCRGsy 2040 (2445)
...|.||+.+||+.+
T Consensus 339 ~~~c~c~~~~cr~~~ 353 (364)
T KOG1082|consen 339 KKNCNCGLEKCRGLL 353 (364)
T ss_pred chhhcCCCHHhCccc
Confidence 678999999999954
No 4
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.84 E-value=2.2e-21 Score=236.75 Aligned_cols=178 Identities=23% Similarity=0.304 Sum_probs=128.1
Q ss_pred hhhhhhHHHHHHHHHhhhccccCCCCCCCCCCCCCC------cccccC--C-cCc---------cCCCchhhhccccccc
Q 000067 1815 LEKHLFIEDVLLRTLNKQVRHFTGTGNTPMMYPLQP------VIEEIE--K-EAV---------DDCDVRTMKMCRGILK 1876 (2445)
Q Consensus 1815 ~qKhkFIek~LL~tLNkqVR~f~GcG~tP~~c~ckP------ViECse--C-~Cg---------eeC~NRllQ~C~~ilk 1876 (2445)
.....|.++.++|..+.+ ..|+||-| +..|..+. +.||.+ | .|+ ..|.|-.+|+..+
T Consensus 519 ~~n~~~CEk~C~C~~dC~-nrF~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l~~~~q--- 593 (739)
T KOG1079|consen 519 IDNETFCEKFCYCSPDCR-NRFPGCRC-KAQCNTKQCPCYLAVRECDPDVCLMCGNVDHFDSSKISCKNTNLQRGEQ--- 593 (739)
T ss_pred cccCcchhhcccCCHHHH-hcCCCCCc-ccccccCcCchhhhccccCchHHhccCcccccccCccccccchhhhhhh---
Confidence 455567777777766544 56899988 66554442 245542 1 122 2555544444222
Q ss_pred ccccCCCcceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCCceeEeecCCCCCCC
Q 000067 1877 AMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDAD 1956 (2445)
Q Consensus 1877 ai~r~PleVFrT~rKGwGVFAteDegIpKGEFI~EYvGEVIt~eE~~ERqd~iRrlq~~skd~~~dFY~m~L~r~kgDa~ 1956 (2445)
.++-+-.+..-|||+|+.+. +.+++||.||+||+|+..|+..+-..+. .+-..+|+....+
T Consensus 594 ----kr~llapSdVaGwGlFlKe~--v~KnefisEY~GE~IS~dEADrRGkiYD-----------r~~cSflFnln~d-- 654 (739)
T KOG1079|consen 594 ----KRVLLAPSDVAGWGLFLKES--VSKNEFISEYTGEIISHDEADRRGKIYD-----------RYMCSFLFNLNND-- 654 (739)
T ss_pred ----cceeechhhccccceeeccc--cCCCceeeeecceeccchhhhhcccccc-----------cccceeeeecccc--
Confidence 12222234456999999986 9999999999999999977654432211 1112445554433
Q ss_pred CCceEEEcCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEECCCCCCCCeEEEecCCCCCC
Q 000067 1957 GYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTES 2020 (2445)
Q Consensus 1957 Gyd~lVIDATrkGNiARFINHSCdPNCetq~v~VdGe~RIafFAlRDIkaGEELTFDYG~~~es 2020 (2445)
++|||+++||.+||+|||-+|||++.+++|.|..||+|||.|.|++||||||||.+..+.
T Consensus 655 ----yviDs~rkGnk~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs~~~ 714 (739)
T KOG1079|consen 655 ----YVIDSTRKGNKIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYSPEH 714 (739)
T ss_pred ----ceEeeeeecchhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccCccc
Confidence 899999999999999999999999999999999999999999999999999999987654
No 5
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.82 E-value=2.1e-21 Score=242.73 Aligned_cols=125 Identities=28% Similarity=0.544 Sum_probs=101.9
Q ss_pred ccccCCCcceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCCceeEeecCCCCCCC
Q 000067 1877 AMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDAD 1956 (2445)
Q Consensus 1877 ai~r~PleVFrT~rKGwGVFAteDegIpKGEFI~EYvGEVIt~eE~~ERqd~iRrlq~~skd~~~dFY~m~L~r~kgDa~ 1956 (2445)
.-...++++|+.+.+||||.+... |++||||+||+|||++..++.++ .+- + + -...+.|.+.+.-+
T Consensus 1174 ~e~cp~L~v~~gp~~G~~v~tk~P--ikagtfI~EYvGeVit~ke~e~~--mmt-l--~--~~d~~~~cL~I~p~----- 1239 (1306)
T KOG1083|consen 1174 HEECPPLEVFRGPKKGWGVRTKEP--IKAGTFIMEYVGEVITEKEFEPR--MMT-L--Y--HNDDDHYCLVIDPG----- 1239 (1306)
T ss_pred hccCCCcceeccCCCCcccccccc--ccccchHHHHHHHHHHHHhhccc--ccc-c--C--CCCCcccccccCcc-----
Confidence 334457999999999999999976 99999999999999986554332 111 1 1 12344555544321
Q ss_pred CCceEEEcCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEECCCCCCCCeEEEecCCCCC
Q 000067 1957 GYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTE 2019 (2445)
Q Consensus 1957 Gyd~lVIDATrkGNiARFINHSCdPNCetq~v~VdGe~RIafFAlRDIkaGEELTFDYG~~~e 2019 (2445)
+|||+.++||.+||+||||+|||+++.|.|+|.+|+++||+|||.+||||||||++...
T Consensus 1240 ----l~id~~R~~n~~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks~ 1298 (1306)
T KOG1083|consen 1240 ----LFIDIPRMGNGARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKSF 1298 (1306)
T ss_pred ----ccCChhhccccccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecccccc
Confidence 79999999999999999999999999999999999999999999999999999997644
No 6
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.82 E-value=7.3e-20 Score=178.08 Aligned_cols=114 Identities=32% Similarity=0.566 Sum_probs=90.1
Q ss_pred cceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCCceeEeecCCCCCCCCCceEEE
Q 000067 1884 DKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVV 1963 (2445)
Q Consensus 1884 eVFrT~rKGwGVFAteDegIpKGEFI~EYvGEVIt~eE~~ERqd~iRrlq~~skd~~~dFY~m~L~r~kgDa~Gyd~lVI 1963 (2445)
+++.++.+|+||||+++ |++|++|++|.|.++...++.+....... . ....+|.+... . .++|
T Consensus 3 ~~~~~~~~G~gl~a~~~--i~~g~~i~~~~g~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~---~------~~~i 65 (116)
T smart00317 3 EVFKSPGKGWGVRATED--IPKGEFIGEYVGEIITSEEAEERSKAYDT---D---GADSFYLFEID---S------DLCI 65 (116)
T ss_pred EEEecCCCcEEEEECCc--cCCCCEEEEEEeEEECHHHHHHHHHHHHh---c---CCCCEEEEECC---C------CEEE
Confidence 45666789999999998 99999999999999987654433221111 1 11123333221 1 2799
Q ss_pred cCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEECCCCCCCCeEEEec
Q 000067 1964 DAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDY 2014 (2445)
Q Consensus 1964 DATrkGNiARFINHSCdPNCetq~v~VdGe~RIafFAlRDIkaGEELTFDY 2014 (2445)
|+...||++|||||||.|||.+..+..++..+|.|+|+|||++|||||+||
T Consensus 66 d~~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 66 DARRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred eCCccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 999999999999999999999999999888899999999999999999999
No 7
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.77 E-value=5.7e-19 Score=216.50 Aligned_cols=188 Identities=23% Similarity=0.358 Sum_probs=128.1
Q ss_pred ccccc-CCcCccCCCchhhhcccccccccc-cCCCcceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhh
Q 000067 1851 VIEEI-EKEAVDDCDVRTMKMCRGILKAMD-SRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDG 1928 (2445)
Q Consensus 1851 ViECs-eC~CgeeC~NRllQ~C~~ilkai~-r~PleVFrT~rKGwGVFAteDegIpKGEFI~EYvGEVIt~eE~~ERqd~ 1928 (2445)
+++|. .|.|...|.|+..+.......++. -.-+++|.+...|||+.+..+ |+.-+|||+|+|...+..-..+-..+
T Consensus 981 f~e~~~hss~~~~e~~~~v~~~~~~~me~~s~~~l~i~~~~~~~~~~~edtD--~~~~~~~~~~~~~ppt~~l~~~~r~a 1058 (1262)
T KOG1141|consen 981 FFECNDHSSCHRKEYNRVVQNNIKYPMEVSSFNDLQIFKTAQSGWGVREDTD--IPQSTFICTYVGAPPTDDLADELRNA 1058 (1262)
T ss_pred ceeccccchhcccccchhhhcCCccceeeeeccccccccccccccccccccc--CCCCcccccccCCCCchhhHHHHhhh
Confidence 56784 688999999999986544322222 223788999999999999987 99999999999987665221111100
Q ss_pred hHhhhcCC-------------CCCCCCc------ee--------------------------------------------
Q 000067 1929 IRSLQKNN-------------EDPAPEF------YN-------------------------------------------- 1945 (2445)
Q Consensus 1929 iRrlq~~s-------------kd~~~dF------Y~-------------------------------------------- 1945 (2445)
....+.+. .+...+| |.
T Consensus 1059 qad~~sn~~D~~~~~~l~es~~~~~T~~r~~t~~~~~~~~~d~dd~q~I~k~ve~qd~~~~~~~T~~~~RQ~~~~s~k~~ 1138 (1262)
T KOG1141|consen 1059 QADQYSNDLDLKDTVELEESREDHETDFRGDTSDYDDEEGSDGDDGQDIMKMVERQDSSESGEETKRLTRQKRKQSKKSG 1138 (1262)
T ss_pred hhccccCccchhhhhhhhhcccccccccCCCCCCCcccccccCccHHHHHHHhhcccccccccccchhhhhhhhhhhhcc
Confidence 00000000 0000000 00
Q ss_pred -------------EeecCCCCC--------CCCC----ceEEEcCcccCCcccccCCCCCCCeEEEEEEECCE----EEE
Q 000067 1946 -------------IYLERPKGD--------ADGY----DLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGH----YQI 1996 (2445)
Q Consensus 1946 -------------m~L~r~kgD--------a~Gy----d~lVIDATrkGNiARFINHSCdPNCetq~v~VdGe----~RI 1996 (2445)
-+....++. .+-| .+++|||+..||++||+||||+||+.+|.++|+-+ |.+
T Consensus 1139 ~~~s~~~~~~ts~~~~~~dkges~~~~~~~~~~y~~~~~~yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwV 1218 (1262)
T KOG1141|consen 1139 KGGSVEKDDTTSRDSMEKDKGESKDEPVFNWDKYFEPFPLYVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWV 1218 (1262)
T ss_pred cCccccccccCccchhhhccCccCcccccchhhccCCCceEEEecccccchhhhhccCCCccceeeeeeeeccccCCchh
Confidence 000000110 0001 35899999999999999999999999999999874 889
Q ss_pred EEEECCCCCCCCeEEEecCCCCCCcccccCeeEEeCCCCcccccc
Q 000067 1997 GIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYL 2041 (2445)
Q Consensus 1997 afFAlRDIkaGEELTFDYG~~~eskee~~k~kClCGS~nCRGsyL 2041 (2445)
||||.+-|++|+||||||++.....++ ....|.||+.+|||.+|
T Consensus 1219 AFFt~kyVkAgtELTWDY~Ye~g~v~~-keL~C~CGa~~CrgrLL 1262 (1262)
T KOG1141|consen 1219 AFFTRKYVKAGTELTWDYQYEQGQVAT-KELTCHCGAENCRGRLL 1262 (1262)
T ss_pred hhhhhhhhccCceeeeecccccccccc-ceEEEecChhhhhcccC
Confidence 999999999999999999987654433 34789999999999775
No 8
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.59 E-value=1.9e-15 Score=172.03 Aligned_cols=116 Identities=28% Similarity=0.412 Sum_probs=95.3
Q ss_pred cCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCCceeEeecCCCCCCCCCceEEEcCcc
Q 000067 1888 AYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMH 1967 (2445)
Q Consensus 1888 T~rKGwGVFAteDegIpKGEFI~EYvGEVIt~eE~~ERqd~iRrlq~~skd~~~dFY~m~L~r~kgDa~Gyd~lVIDATr 1967 (2445)
..+||.||+|+.. |++|+||.||.|.+|...++.+++.. |..+.....|+.|+ .+.. ..++||||.
T Consensus 263 ~dgKGRGv~a~~~--F~rgdFVVEY~Gdliei~eAk~rE~~------Ya~De~~GcYMYyF-~h~s-----k~yCiDAT~ 328 (392)
T KOG1085|consen 263 KDGKGRGVRAKVN--FERGDFVVEYRGDLIEISEAKVREEQ------YANDEEIGCYMYYF-EHNS-----KKYCIDATK 328 (392)
T ss_pred eccccceeEeecc--cccCceEEEEecceeeechHHHHHHH------hccCcccceEEEee-eccC-----eeeeeeccc
Confidence 3469999999987 99999999999999988776655432 33455566674444 3322 248999997
Q ss_pred c-CCcccccCCCCCCCeEEEEEEECCEEEEEEEECCCCCCCCeEEEecCCC
Q 000067 1968 K-ANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSV 2017 (2445)
Q Consensus 1968 k-GNiARFINHSCdPNCetq~v~VdGe~RIafFAlRDIkaGEELTFDYG~~ 2017 (2445)
- +-++|.||||-.+||.+.++.++|.+++.++|.|||.+||||+||||..
T Consensus 329 et~~lGRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 329 ETPWLGRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred ccccchhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc
Confidence 5 4579999999999999999999999999999999999999999999964
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.49 E-value=9.8e-15 Score=179.47 Aligned_cols=142 Identities=30% Similarity=0.500 Sum_probs=107.0
Q ss_pred CCcceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCCceeEeecCCCCCCCCCceE
Q 000067 1882 PDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLV 1961 (2445)
Q Consensus 1882 PleVFrT~rKGwGVFAteDegIpKGEFI~EYvGEVIt~eE~~ERqd~iRrlq~~skd~~~dFY~m~L~r~kgDa~Gyd~l 1961 (2445)
+..+.....+|+||||... |++|+||.+|.|+++...+...+.. .+.. ....+..++.... ..
T Consensus 333 ~~~~~~~~~~~~g~fa~~~--i~~~e~i~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~-------~~ 395 (480)
T COG2940 333 PNVVQESEIKGYGVFALES--IKKGEFIIEYHGEIIRRKEAREREE------NYDL--LGNEFSFGLLEDK-------DK 395 (480)
T ss_pred hhhhhhhcccccceeehhh--ccchHHHHHhcCcccchHHHHhhhc------cccc--cccccchhhcccc-------ch
Confidence 3455567789999999987 9999999999999987643322211 1111 1111111111111 26
Q ss_pred EEcCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEECCCCCCCCeEEEecCCCCCCcc-----cccCeeEEeCCCCc
Q 000067 1962 VVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKE-----EYEASVCLCGSQVC 2036 (2445)
Q Consensus 1962 VIDATrkGNiARFINHSCdPNCetq~v~VdGe~RIafFAlRDIkaGEELTFDYG~~~eske-----e~~k~kClCGS~nC 2036 (2445)
++|+...|+++|||||||.|||.+....+.|..++.++|+|||.+|||||+||+...+... ......|.||+..|
T Consensus 396 ~~d~~~~g~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (480)
T COG2940 396 VRDSQKAGDVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRC 475 (480)
T ss_pred hhhhhhcccccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCcc
Confidence 8999999999999999999999999988888889999999999999999999998877532 11357899999999
Q ss_pred cccc
Q 000067 2037 RGSY 2040 (2445)
Q Consensus 2037 RGsy 2040 (2445)
++++
T Consensus 476 ~~~~ 479 (480)
T COG2940 476 SHTM 479 (480)
T ss_pred CCCC
Confidence 9965
No 10
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.33 E-value=1.4e-12 Score=131.50 Aligned_cols=54 Identities=30% Similarity=0.442 Sum_probs=45.8
Q ss_pred EEcCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEECCCCCCCCeEEEecC
Q 000067 1962 VVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYN 2015 (2445)
Q Consensus 1962 VIDATrkGNiARFINHSCdPNCetq~v~VdGe~RIafFAlRDIkaGEELTFDYG 2015 (2445)
..++.....++.|+||||.|||.+..........+.|.|.|+|++|||||++||
T Consensus 109 ~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 109 DRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred cccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 456667778999999999999999887666667899999999999999999997
No 11
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.79 E-value=1.5e-09 Score=134.15 Aligned_cols=121 Identities=29% Similarity=0.550 Sum_probs=94.6
Q ss_pred EeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCCceeEeecCCCCCCCCCceEEEcCcccCCccccc
Q 000067 1896 VCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRI 1975 (2445)
Q Consensus 1896 FAteDegIpKGEFI~EYvGEVIt~eE~~ERqd~iRrlq~~skd~~~dFY~m~L~r~kgDa~Gyd~lVIDATrkGNiARFI 1975 (2445)
+|..+ |.+| +|++++..++.-+.. .-......++|..++..+ ..||+...||+.||+
T Consensus 319 ~~~~~--~~k~------vg~~i~~~e~~~~~~------~~~~~~~~~~~~~~~e~~---------~~id~~~~~n~sr~~ 375 (463)
T KOG1081|consen 319 TAKAD--IRKG------VGEVIDDKECKARLQ------RVKESDLVDFYMVFIQKD---------RIIDAGPKGNYSRFL 375 (463)
T ss_pred hhHHh--hhcc------cCcccchhhheeehh------hhhccchhhhhhhhhhcc---------cccccccccchhhhh
Confidence 66665 7777 999998765533221 111223456665554432 279999999999999
Q ss_pred CCCCCCCeEEEEEEECCEEEEEEEECCCCCCCCeEEEecCCCCCCcccccCeeEEeCCCCcccccccC
Q 000067 1976 CHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNL 2043 (2445)
Q Consensus 1976 NHSCdPNCetq~v~VdGe~RIafFAlRDIkaGEELTFDYG~~~eskee~~k~kClCGS~nCRGsyLg~ 2043 (2445)
||||+|||..+.|.+.+..++++||.++|++||||||+|+..... ....|.||+.+|.++....
T Consensus 376 nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~~~~----~~~~~~~~~e~~~~~~~k~ 439 (463)
T KOG1081|consen 376 NHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGNCEG----NEKRCCCGSENCTETKGKK 439 (463)
T ss_pred cccCCCceeechhheecccccccccccccccchhhhheeeccccC----CcceEeecccccccCCccc
Confidence 999999999999999999999999999999999999999987543 3478999999999965443
No 12
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.63 E-value=2.6e-08 Score=117.96 Aligned_cols=120 Identities=25% Similarity=0.405 Sum_probs=87.1
Q ss_pred CccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCCceeEeecCCCCCCCCCceEEEcCcccC
Q 000067 1890 RKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKA 1969 (2445)
Q Consensus 1890 rKGwGVFAteDegIpKGEFI~EYvGEVIt~eE~~ERqd~iRrlq~~skd~~~dFY~m~L~r~kgDa~Gyd~lVIDATrkG 1969 (2445)
..|--|++++. |.+|+-|--.+|-|+.-.+.+|+. + . .....+|-.||-.+..- ..+++
T Consensus 136 ~~gAkivst~~--w~~ndkIe~LvGcIaeLse~eE~~--l---l---~~g~nDFSvmyStRk~c-----aqLwL------ 194 (453)
T KOG2589|consen 136 QNGAKIVSTKS--WSRNDKIELLVGCIAELSEAEERS--L---L---RGGGNDFSVMYSTRKRC-----AQLWL------ 194 (453)
T ss_pred CCCceEEeecc--ccCCccHHHhhhhhhhcChhhhHH--H---H---hccCCceeeeeecccch-----hhhee------
Confidence 56889999987 999999999999987655444431 1 1 12345677777655321 12444
Q ss_pred CcccccCCCCCCCeEEEEEEECCEEEEEEEECCCCCCCCeEEEecCCCCCCcccccCeeEEeCCCCccc
Q 000067 1970 NYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRG 2038 (2445)
Q Consensus 1970 NiARFINHSCdPNCetq~v~VdGe~RIafFAlRDIkaGEELTFDYG~~~eskee~~k~kClCGS~nCRG 2038 (2445)
..|+||||-|.|||.+.. .|.-++.+-++|||+||||||.=|+..++..+ ...|.| ..|-.
T Consensus 195 GPaafINHDCrpnCkFvs---~g~~tacvkvlRDIePGeEITcFYgs~fFG~~---N~~CeC--~TCER 255 (453)
T KOG2589|consen 195 GPAAFINHDCRPNCKFVS---TGRDTACVKVLRDIEPGEEITCFYGSGFFGEN---NEECEC--VTCER 255 (453)
T ss_pred ccHHhhcCCCCCCceeec---CCCceeeeehhhcCCCCceeEEeecccccCCC---CceeEE--eeccc
Confidence 568999999999999866 46678999999999999999999999887642 234555 55644
No 13
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=97.45 E-value=0.0001 Score=65.56 Aligned_cols=45 Identities=40% Similarity=0.789 Sum_probs=43.2
Q ss_pred ceEEecCCCCccCCCcHHHHHHHHhhcccccCcccccccCceeeec
Q 000067 1045 EWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFDKVWVPL 1090 (2445)
Q Consensus 1045 dWyYlDg~G~E~GP~sfseLQ~lv~~g~i~~~sSvfRK~D~~WvPv 1090 (2445)
.|||.+ .|..+||||+.||..|+.+|.|.+.+-|.++--.-|+|+
T Consensus 1 ~Wy~~~-~g~~~GP~s~~el~~l~~~g~i~~~tlvw~~g~~~W~pl 45 (45)
T PF14237_consen 1 EWYYAR-NGQQQGPFSLEELRQLISSGEIDPDTLVWKEGMSDWKPL 45 (45)
T ss_pred CEEEeC-CCeEECCcCHHHHHHHHHcCCCCCCCeEeCCChhhceEC
Confidence 599999 899999999999999999999999999999999999996
No 14
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=96.99 E-value=0.0007 Score=83.70 Aligned_cols=104 Identities=21% Similarity=0.149 Sum_probs=76.9
Q ss_pred CccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCCceeEeecCCCCCCCCCceEEEcCcc--
Q 000067 1890 RKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMH-- 1967 (2445)
Q Consensus 1890 rKGwGVFAteDegIpKGEFI~EYvGEVIt~eE~~ERqd~iRrlq~~skd~~~dFY~m~L~r~kgDa~Gyd~lVIDATr-- 1967 (2445)
..|.||++..- |.+|+--+-|.|+++.. + ..+.....|+..++..+. ...+||++.
T Consensus 39 ~~~lgV~s~~~--i~~G~~FGP~~G~~~~~----~-----------~~~~~n~~y~W~I~~~d~-----~~~~iDg~d~~ 96 (396)
T KOG2461|consen 39 VTGLGVWSNAS--ILPGTSFGPFEGEIIAS----I-----------DSKSANNRYMWEIFSSDN-----GYEYIDGTDEE 96 (396)
T ss_pred Ccccccccccc--ccCcccccCccCccccc----c-----------ccccccCcceEEEEeCCC-----ceEEeccCChh
Confidence 45899999987 99999999999998221 0 011233566666665431 237999975
Q ss_pred cCCcccccCCCCCC---CeEEEEEEECCEEEEEEEECCCCCCCCeEEEecCCCCC
Q 000067 1968 KANYASRICHSCRP---NCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTE 2019 (2445)
Q Consensus 1968 kGNiARFINHSCdP---NCetq~v~VdGe~RIafFAlRDIkaGEELTFDYG~~~e 2019 (2445)
..|+.||+|=+|+. |+.+.. ..-.|.+.|+|+|.+||||.+.|+.++.
T Consensus 97 ~sNWmRYV~~Ar~~eeQNL~A~Q----~~~~Ifyrt~r~I~p~eELlVWY~~e~~ 147 (396)
T KOG2461|consen 97 HSNWMRYVNSARSEEEQNLLAFQ----IGENIFYRTIRDIRPNEELLVWYGSEYA 147 (396)
T ss_pred hcceeeeecccCChhhhhHHHHh----ccCceEEEecccCCCCCeEEEEeccchH
Confidence 78999999988865 766532 2336889999999999999999997764
No 15
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=96.93 E-value=0.00024 Score=90.92 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=52.2
Q ss_pred ccccc--CCcCccCCCchhhhcccccccccccCCCcceecCCccceEEeCccCCcCCCCEEEEEecEEecc
Q 000067 1851 VIEEI--EKEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPV 1919 (2445)
Q Consensus 1851 ViECs--eC~CgeeC~NRllQ~C~~ilkai~r~PleVFrT~rKGwGVFAteDegIpKGEFI~EYvGEVIt~ 1919 (2445)
++||. ..||+..|.||++|.+.++ .+.+|.+..||||++|..+ |..|.|||-|.|-++..
T Consensus 774 ~yEc~k~ckc~~~~C~nrmvqhg~qv-------Rlq~fkt~~kGWg~rcldd--i~~g~fVciy~g~~l~~ 835 (1262)
T KOG1141|consen 774 PYECLKACKCCGPDCLNRMVQHGYQV-------RLQRFKTIHKGWGRRCLDD--ITGGNFVCIYPGGALLH 835 (1262)
T ss_pred HHHHHHhhccCcHHHHHHHhhcCcee-------EeeeccccccccceEeeee--cCCceEEEEecchhhhh
Confidence 57885 3467999999999987654 6788999999999999998 99999999999999875
No 16
>PF02213 GYF: GYF domain; InterPro: IPR003169 The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif. It was identified in the human intracellular protein termed CD2 binding protein 2 (CD2BP2), which binds to a site containing two tandem PPPGHR segments within the cytoplasmic region of CD2. Binding experiments and mutational analyses have demonstrated the critical importance of the GYF tripeptide in ligand binding. A GYF domain is also found in several other eukaryotic proteins of unknown function []. It has been proposed that the GYF domain found in these proteins could also be involved in proline-rich sequence recognition []. Resolution of the structure of the CD2BP2 GYF domain by NMR spectroscopy revealed a compact domain with a beta-beta-alpha-beta-beta topology, where the single alpha-helix is tilted away from the twisted, anti-parallel beta-sheet. The conserved residues of the GYF domain create a contiguous patch of predominantly hydrophobic nature which forms an integral part of the ligand-binding site []. There is limited homology within the C-terminal 20-30 amino acids of various GYF domains, supporting the idea that this part of the domain is structurally but not functionally important [].; GO: 0005515 protein binding; PDB: 1SYX_F 1L2Z_A 1GYF_A 1WH2_A 3FMA_C 3K3V_A.
Probab=95.74 E-value=0.006 Score=57.11 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=38.2
Q ss_pred ceEEecCCCCccCCCcHHHHHHHHhhcccccCcccccccC----ceeeeccc
Q 000067 1045 EWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFD----KVWVPLTF 1092 (2445)
Q Consensus 1045 dWyYlDg~G~E~GP~sfseLQ~lv~~g~i~~~sSvfRK~D----~~WvPv~~ 1092 (2445)
.|||+|..|..+|||+-.++|.-..+|.+....-|.|..+ ..|++|..
T Consensus 2 ~W~Y~d~~g~~qGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~~~~~~~~~~ 53 (57)
T PF02213_consen 2 MWYYKDPDGNIQGPFSSEQMQAWYKQGYFPDDLQVRRVDDTQFIDPFGSIDR 53 (57)
T ss_dssp EEEEESTTS-EEEEEEHHHHHHHHHTTSSTTT-EEEETTSTTT--SSCECCG
T ss_pred EeEEECCCCCcCCCcCHHHHHHHHHCCCCCCCcEEEEecCCCCcccchhhhh
Confidence 4999999999999999999999999999998777777644 44565543
No 17
>cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.
Probab=95.48 E-value=0.016 Score=54.79 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=43.0
Q ss_pred ceEEecCCCCccCCCcHHHHHHHHhhcccccCcccccc-cCceeeeccccc
Q 000067 1045 EWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRK-FDKVWVPLTFAT 1094 (2445)
Q Consensus 1045 dWyYlDg~G~E~GP~sfseLQ~lv~~g~i~~~sSvfRK-~D~~WvPv~~~~ 1094 (2445)
-|+|+|-.|..||||+-++++.-..+|....+--|=|. .|.-|+||....
T Consensus 3 ~W~Y~d~~g~vqGPF~~~~M~~W~~~gyF~~~l~vr~~~~~~~f~~l~~~~ 53 (57)
T cd00072 3 QWFYKDPQGEIQGPFSASQMLQWYQAGYFPDGLQVRRLDNGGEFYTLGDIL 53 (57)
T ss_pred EEEEECCCCCCcCCcCHHHHHHHHHCCCCCCCeEEEECCCCCCcEEHHHHH
Confidence 39999999999999999999999999999976655555 567899987654
No 18
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.45 E-value=0.015 Score=71.06 Aligned_cols=9 Identities=22% Similarity=0.169 Sum_probs=4.1
Q ss_pred CCCCCCCCC
Q 000067 64 NNGSSSSKN 72 (2445)
Q Consensus 64 ~~~~~~~~~ 72 (2445)
|.|+...-.
T Consensus 30 ~lGkI~elr 38 (479)
T KOG4676|consen 30 NLGKIPELR 38 (479)
T ss_pred hcccccccc
Confidence 345544443
No 19
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=94.66 E-value=0.017 Score=51.27 Aligned_cols=41 Identities=29% Similarity=0.629 Sum_probs=32.8
Q ss_pred cccccchHHHHHHHHHhhhhhhhHHhhcchhhHHHHHh---hhccc
Q 000067 1255 WGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR---FYKGI 1297 (2445)
Q Consensus 1255 w~ll~g~~lar~fh~lr~d~ksl~~~~~tc~~w~~a~~---~yk~~ 1297 (2445)
|..|--.+|..||.|| |.+.|+-++.|||+|+.++. .|+.+
T Consensus 1 i~~LP~Eil~~If~~L--~~~dl~~~~~vcr~w~~~~~~~~lW~~~ 44 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYL--DPRDLLRLSLVCRRWRRIANDNSLWRRL 44 (47)
T ss_dssp CCCS-HHHHHHHHTTS---HHHHHHHTTSSHHHHHHHTCCCHHHHH
T ss_pred ChHhHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHCChhhhhhh
Confidence 4567778999999999 89999999999999999983 44443
No 20
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=94.47 E-value=0.048 Score=69.28 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=7.0
Q ss_pred ccccccccccccCC
Q 000067 365 HYSRHSVEKFHRNS 378 (2445)
Q Consensus 365 ~ys~~s~~rr~r~~ 378 (2445)
.|-+.-+.+|.+++
T Consensus 562 Afys~pshdrpr~s 575 (757)
T KOG4368|consen 562 AFYSPPSHDRPRNS 575 (757)
T ss_pred HhhccccccCCCCC
Confidence 35445555555544
No 21
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=93.71 E-value=0.12 Score=65.88 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=15.9
Q ss_pred ccccccCC-CCCCCCCCcccccc
Q 000067 617 VSMEEDMD-ICDTPPHVPAVTDS 638 (2445)
Q Consensus 617 ~SmeeDmD-IcdtppH~~~~~ds 638 (2445)
..++--|. .|++--|.-.-.|-
T Consensus 272 k~~~~p~~rl~vgnLHfNite~~ 294 (549)
T KOG0147|consen 272 KGFTGPMRRLYVGNLHFNITEDM 294 (549)
T ss_pred cccccchhhhhhcccccCchHHH
Confidence 55666777 78888888776663
No 22
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=92.44 E-value=0.091 Score=47.20 Aligned_cols=44 Identities=25% Similarity=0.626 Sum_probs=41.6
Q ss_pred cEEEeccCCcccCchhhhhhhhhhhcCcccccchhhccCCCCcee
Q 000067 642 KWFYLDHCGMECGPSRLCDLKTLVEEGVLVSDHFIKHLDSNRWET 686 (2445)
Q Consensus 642 kWfyld~~G~e~gp~~l~~lk~l~~~g~l~~dh~ikh~d~~rw~t 686 (2445)
+|||.+ +|...||-.+.+|+.|...|.|-.+-||=+-+-.-|+.
T Consensus 1 ~Wy~~~-~g~~~GP~s~~el~~l~~~g~i~~~tlvw~~g~~~W~p 44 (45)
T PF14237_consen 1 EWYYAR-NGQQQGPFSLEELRQLISSGEIDPDTLVWKEGMSDWKP 44 (45)
T ss_pred CEEEeC-CCeEECCcCHHHHHHHHHcCCCCCCCeEeCCChhhceE
Confidence 699999 99999999999999999999999999999999888875
No 23
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=92.10 E-value=0.16 Score=64.85 Aligned_cols=12 Identities=58% Similarity=0.509 Sum_probs=6.0
Q ss_pred cccccccchhhc
Q 000067 12 QQQQQHNSIMER 23 (2445)
Q Consensus 12 ~~~~~~~~~~~~ 23 (2445)
||+|+.+--||+
T Consensus 275 q~~q~q~~~~e~ 286 (757)
T KOG4368|consen 275 QQQQQQMPQMEA 286 (757)
T ss_pred HHHHHhhHHHHH
Confidence 444455555554
No 24
>cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.
Probab=91.79 E-value=0.13 Score=48.80 Aligned_cols=48 Identities=21% Similarity=0.438 Sum_probs=44.6
Q ss_pred cEEEeccCCcccCchhhhhhhhhhhcCcccccchhhcc-CCCCceeeec
Q 000067 642 KWFYLDHCGMECGPSRLCDLKTLVEEGVLVSDHFIKHL-DSNRWETVEN 689 (2445)
Q Consensus 642 kWfyld~~G~e~gp~~l~~lk~l~~~g~l~~dh~ikh~-d~~rw~t~e~ 689 (2445)
.|+|+|..|..|||=-...+..-.+.|++-.|..|+.. +..+|+++..
T Consensus 3 ~W~Y~d~~g~vqGPF~~~~M~~W~~~gyF~~~l~vr~~~~~~~f~~l~~ 51 (57)
T cd00072 3 QWFYKDPQGEIQGPFSASQMLQWYQAGYFPDGLQVRRLDNGGEFYTLGD 51 (57)
T ss_pred EEEEECCCCCCcCCcCHHHHHHHHHCCCCCCCeEEEECCCCCCcEEHHH
Confidence 59999999999999999999999999999999999999 6679998754
No 25
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=90.50 E-value=0.44 Score=61.07 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=8.6
Q ss_pred cCCcCCCCchhhhhhccc
Q 000067 711 VSPPEASGNLLADTGDTA 728 (2445)
Q Consensus 711 v~ppea~gn~l~~~~~~~ 728 (2445)
|-++||-+|+++.++..+
T Consensus 252 vq~sEaeknr~a~~s~a~ 269 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPAL 269 (549)
T ss_pred ecccHHHHHHHHhccccc
Confidence 445555555544444333
No 26
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=90.24 E-value=0.14 Score=42.45 Aligned_cols=15 Identities=47% Similarity=1.116 Sum_probs=13.2
Q ss_pred CeeEEeCCCCccccc
Q 000067 2026 ASVCLCGSQVCRGSY 2040 (2445)
Q Consensus 2026 k~kClCGS~nCRGsy 2040 (2445)
.+.|+|||++|||++
T Consensus 2 ~~~C~CGs~~CRG~l 16 (26)
T smart00508 2 KQPCLCGAPNCRGFL 16 (26)
T ss_pred CeeeeCCCcccccee
Confidence 378999999999965
No 27
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=90.12 E-value=1.6 Score=52.65 Aligned_cols=8 Identities=63% Similarity=1.049 Sum_probs=3.5
Q ss_pred CCCCCCCC
Q 000067 428 RDRSPSRH 435 (2445)
Q Consensus 428 r~RSP~rr 435 (2445)
|.|||-+.
T Consensus 220 Rsrsp~r~ 227 (354)
T KOG2146|consen 220 RSRSPPRE 227 (354)
T ss_pred cccCCccc
Confidence 44444443
No 28
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=89.89 E-value=0.93 Score=58.39 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=16.4
Q ss_pred HHhhhccccccCCchhHHHHHHHhhcc
Q 000067 764 VGALLDGFTVIPGKEIETLGEILQTTF 790 (2445)
Q Consensus 764 v~~l~~g~~~~~g~e~e~~~~~l~~~~ 790 (2445)
++.+|.-|-.--|-.|.++-...+..|
T Consensus 520 LRevLKKyG~nvGL~ikaVRsYaqQLf 546 (752)
T KOG0670|consen 520 LREVLKKYGRNVGLHIKAVRSYAQQLF 546 (752)
T ss_pred HHHHHHHhCcccceeehHHHHHHHHHH
Confidence 345666666666777776665555444
No 29
>PF02213 GYF: GYF domain; InterPro: IPR003169 The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif. It was identified in the human intracellular protein termed CD2 binding protein 2 (CD2BP2), which binds to a site containing two tandem PPPGHR segments within the cytoplasmic region of CD2. Binding experiments and mutational analyses have demonstrated the critical importance of the GYF tripeptide in ligand binding. A GYF domain is also found in several other eukaryotic proteins of unknown function []. It has been proposed that the GYF domain found in these proteins could also be involved in proline-rich sequence recognition []. Resolution of the structure of the CD2BP2 GYF domain by NMR spectroscopy revealed a compact domain with a beta-beta-alpha-beta-beta topology, where the single alpha-helix is tilted away from the twisted, anti-parallel beta-sheet. The conserved residues of the GYF domain create a contiguous patch of predominantly hydrophobic nature which forms an integral part of the ligand-binding site []. There is limited homology within the C-terminal 20-30 amino acids of various GYF domains, supporting the idea that this part of the domain is structurally but not functionally important [].; GO: 0005515 protein binding; PDB: 1SYX_F 1L2Z_A 1GYF_A 1WH2_A 3FMA_C 3K3V_A.
Probab=89.29 E-value=0.23 Score=46.71 Aligned_cols=43 Identities=21% Similarity=0.479 Sum_probs=37.8
Q ss_pred cEEEeccCCcccCchhhhhhhhhhhcCcccccchhhccCCCCc
Q 000067 642 KWFYLDHCGMECGPSRLCDLKTLVEEGVLVSDHFIKHLDSNRW 684 (2445)
Q Consensus 642 kWfyld~~G~e~gp~~l~~lk~l~~~g~l~~dh~ikh~d~~rw 684 (2445)
.|+|+|..|..|||=-...+..-...|++-.+..|++.+...+
T Consensus 2 ~W~Y~d~~g~~qGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~ 44 (57)
T PF02213_consen 2 MWYYKDPDGNIQGPFSSEQMQAWYKQGYFPDDLQVRRVDDTQF 44 (57)
T ss_dssp EEEEESTTS-EEEEEEHHHHHHHHHTTSSTTT-EEEETTSTTT
T ss_pred EeEEECCCCCcCCCcCHHHHHHHHHCCCCCCCcEEEEecCCCC
Confidence 6999999999999999999999999999999999999976433
No 30
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=89.11 E-value=0.28 Score=62.25 Aligned_cols=10 Identities=50% Similarity=0.461 Sum_probs=4.4
Q ss_pred cchhhhhhhe
Q 000067 85 VSTKTVRKKI 94 (2445)
Q Consensus 85 ~~~~~~~~~~ 94 (2445)
++.+.-+++|
T Consensus 126 vSE~~~L~qi 135 (653)
T KOG2548|consen 126 VSEKHYLKQI 135 (653)
T ss_pred ccHHHHHHHH
Confidence 3444444443
No 31
>smart00444 GYF Contains conserved Gly-Tyr-Phe residues. Proline-binding domain in CD2-binding protein. Contains conserved Gly-Tyr-Phe residues.
Probab=88.83 E-value=0.46 Score=45.13 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=33.0
Q ss_pred ceEEecCCCCccCCCcHHHHHHHHhhcccccCcccccccC
Q 000067 1045 EWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFD 1084 (2445)
Q Consensus 1045 dWyYlDg~G~E~GP~sfseLQ~lv~~g~i~~~sSvfRK~D 1084 (2445)
-|+|+|-.|..+||||-+++|.-..+|.....--|=|..+
T Consensus 2 ~W~Y~d~~~~iqGPf~~~~M~~W~~~gyF~~~l~vr~~~~ 41 (56)
T smart00444 2 LWLYKDPDGEIQGPFTASQMSQWYQAGYFPDSLQIKRLNE 41 (56)
T ss_pred EEEEECCCCCEeCCcCHHHHHHHHHCCCCCCCeEEEEcCC
Confidence 3999999999999999999999999999976544433333
No 32
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.52 E-value=0.55 Score=60.78 Aligned_cols=7 Identities=43% Similarity=0.192 Sum_probs=2.7
Q ss_pred cCCCCCC
Q 000067 550 KLGPKDS 556 (2445)
Q Consensus 550 K~~~k~~ 556 (2445)
|-+++..
T Consensus 817 ~~~~~~~ 823 (878)
T KOG1847|consen 817 KRIKKDE 823 (878)
T ss_pred ccCcCcc
Confidence 3333333
No 33
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=86.17 E-value=0.74 Score=57.25 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=9.2
Q ss_pred ccccccccCCCCCCCC
Q 000067 318 FHGNRFKRHGTDSDSG 333 (2445)
Q Consensus 318 ~~~~r~kR~~~~~~s~ 333 (2445)
.+.+..+++++++.++
T Consensus 251 kskS~~s~e~SdSs~~ 266 (453)
T KOG3794|consen 251 KSKSSKSKEGSDSSSS 266 (453)
T ss_pred cccchhccccCCcccc
Confidence 3445566666666555
No 34
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=86.07 E-value=1.9 Score=55.87 Aligned_cols=75 Identities=29% Similarity=0.441 Sum_probs=35.3
Q ss_pred ccccCCCCCCcccccccccC--CCCccccccc-ccccccceEEecCCCCccCCC-----c-----HHHHHHHHhhccccc
Q 000067 1009 KARNNQDSQGSWKSIACINT--PKDRLCTVDD-LQLQLGEWYYLDGAGHERGPS-----S-----FSELQVLVDQGCIQK 1075 (2445)
Q Consensus 1009 k~~~~~~~~~~~~~~~~~~~--p~d~~ct~~~-lql~~GdWyYlDg~G~E~GP~-----s-----fseLQ~lv~~g~i~~ 1075 (2445)
|+.++.|-.+-+-++-+.-+ -+.|||-|=| |.|+|-+- |---|+--|=. | |-+|.-|-.-|+|-.
T Consensus 483 kKL~~AD~Edk~Hclrl~r~F~hknHLClVFE~LslNLRev--LKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHa 560 (752)
T KOG0670|consen 483 KKLNDADPEDKFHCLRLFRHFKHKNHLCLVFEPLSLNLREV--LKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHA 560 (752)
T ss_pred HHhhccCchhhhHHHHHHHHhhhcceeEEEehhhhchHHHH--HHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeec
Confidence 34444444444444443332 3567898744 55555442 33334444432 2 334444444444433
Q ss_pred CcccccccCceeee
Q 000067 1076 HTSVFRKFDKVWVP 1089 (2445)
Q Consensus 1076 ~sSvfRK~D~~WvP 1089 (2445)
-- |-||+-|-
T Consensus 561 DI----KPDNiLVN 570 (752)
T KOG0670|consen 561 DI----KPDNILVN 570 (752)
T ss_pred cc----CccceEec
Confidence 22 55666654
No 35
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=84.52 E-value=1.1 Score=55.88 Aligned_cols=11 Identities=0% Similarity=-0.233 Sum_probs=4.5
Q ss_pred CCCcccccchh
Q 000067 556 SNARCSRSSAK 566 (2445)
Q Consensus 556 ~~~~~~~~~~k 566 (2445)
.++-+.+|...
T Consensus 131 kg~afVeF~~~ 141 (457)
T TIGR01622 131 KGVAYVEFYDV 141 (457)
T ss_pred ceEEEEEECCH
Confidence 33444444433
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=84.37 E-value=3 Score=52.70 Aligned_cols=12 Identities=8% Similarity=0.324 Sum_probs=6.2
Q ss_pred ccccCceeeecc
Q 000067 1080 FRKFDKVWVPLT 1091 (2445)
Q Consensus 1080 fRK~D~~WvPv~ 1091 (2445)
|-....++||-.
T Consensus 443 ~G~v~~v~i~~~ 454 (509)
T TIGR01642 443 YGPLINIVIPRP 454 (509)
T ss_pred cCCeeEEEeecc
Confidence 344455666643
No 37
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=84.33 E-value=0.79 Score=38.65 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=27.3
Q ss_pred cchHHHHHHHHHhhhhhhhHHhhcchhhHHHHHh
Q 000067 1259 DGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR 1292 (2445)
Q Consensus 1259 ~g~~lar~fh~lr~d~ksl~~~~~tc~~w~~a~~ 1292 (2445)
...++.+||-|| |.+.++-++.+|+.|++++.
T Consensus 2 P~~ll~~I~~~l--~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 2 PDEILEEILSKL--PPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhc
Confidence 346889999988 45899999999999999985
No 38
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=83.73 E-value=1.2 Score=59.20 Aligned_cols=9 Identities=22% Similarity=0.080 Sum_probs=5.7
Q ss_pred hhhcccccc
Q 000067 869 AAQDRCSRK 877 (2445)
Q Consensus 869 ~~qd~~~~~ 877 (2445)
+.|=||+|.
T Consensus 550 f~eIrY~R~ 558 (1194)
T KOG4246|consen 550 FLEIRYDRV 558 (1194)
T ss_pred hheeEeccc
Confidence 556666664
No 39
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=83.48 E-value=2.5 Score=45.91 Aligned_cols=60 Identities=25% Similarity=0.417 Sum_probs=48.8
Q ss_pred HHHHHHHHHHH---Hhccccccc---chh----------------HHHHhhhccccccccCCcchhhhHHHHHHHHHHhc
Q 000067 1483 EFLASSLKEIM---RVNTFEFFV---PKV----------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAK 1540 (2445)
Q Consensus 1483 ~f~~~~l~~im---~~~~~dff~---~kv----------------~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k 1540 (2445)
+.+...|+.|| ....+.+|. ++. ..|+.|+++|||.+ +..+..||..|+..|..+-
T Consensus 27 ~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s--~~~f~~Dv~Li~~Na~~yN 104 (128)
T cd05529 27 ERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRS--LEALRHDVRLILSNAETFN 104 (128)
T ss_pred HHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHC
Confidence 67888999999 666677776 333 57899999999988 7899999999999999875
Q ss_pred cCCC
Q 000067 1541 NRGS 1544 (2445)
Q Consensus 1541 ~~~~ 1544 (2445)
+.+.
T Consensus 105 ~~~s 108 (128)
T cd05529 105 EPNS 108 (128)
T ss_pred CCCC
Confidence 5443
No 40
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=82.91 E-value=0.87 Score=55.86 Aligned_cols=40 Identities=30% Similarity=0.506 Sum_probs=34.6
Q ss_pred CccccccchHHHHHHHHHhh---hhhhhHHhhcchhhHHHHHh
Q 000067 1253 GGWGLLDGHTLAHVFHFLRS---DMKSLAFASLTCRHWRAAVR 1292 (2445)
Q Consensus 1253 ~~w~ll~g~~lar~fh~lr~---d~ksl~~~~~tc~~w~~a~~ 1292 (2445)
.+-..|---+|+|||-.+-+ ||.||.-+|||||+|.-+++
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence 33556888999999999886 88999999999999999875
No 41
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=82.85 E-value=1 Score=56.08 Aligned_cols=9 Identities=44% Similarity=0.708 Sum_probs=3.5
Q ss_pred cCCCccccc
Q 000067 491 AERSPQDRA 499 (2445)
Q Consensus 491 ~erSP~dRs 499 (2445)
-|++...|+
T Consensus 416 ~E~~Rr~rs 424 (453)
T KOG3794|consen 416 EERSRRNRS 424 (453)
T ss_pred hhhhhhhhh
Confidence 334443333
No 42
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=82.48 E-value=0.83 Score=46.69 Aligned_cols=94 Identities=16% Similarity=0.212 Sum_probs=41.0
Q ss_pred hhhhhcc-ccCCCccccCCcccccccccccccCCc---ceeeeecCcCccccccccccCCCCcchhhhhhhhhHHHHHHH
Q 000067 1752 YAEKLNA-QKNGSEELDMELPEVKDYKPRKQLGDQ---VFEQEVYGIDPYTHNLLLDSMPDELDWNLLEKHLFIEDVLLR 1827 (2445)
Q Consensus 1752 ~~Ekl~~-~~ngtde~~~~~P~vK~YkprKvlG~D---V~Eqe~~GcDcyTrn~L~~~lP~el~Ws~~qKhkFIek~LL~ 1827 (2445)
+.|++|+ ++|.+| +...|.-..|.++.+++.. ..+...+||+|.. .+ .............
T Consensus 5 g~e~~pI~~~N~vd--~~~~p~~F~Yi~~~~~~~~~~~~~~~~~~~C~C~~-~C-----~~~~~C~C~~~~~-------- 68 (103)
T PF05033_consen 5 GKENVPIPVVNDVD--DEPPPPNFEYIPENIYGEGVPDIDPEFLQGCDCSG-DC-----SNPSNCECLQRNG-------- 68 (103)
T ss_dssp TSSSS-EEEEESSS--S--SSTSSEE-SS-EESTTSS-TBGGGTS----SS-SS-----TCTTTSHHHCCTS--------
T ss_pred CccCCCEEEEeCCC--CCCCCCCeEEeeeEEcCCCccccccccCccCccCC-CC-----CCCCCCcCccccC--------
Confidence 6788888 889887 2233455666666666663 5667778999943 22 1111122221110
Q ss_pred HHhhhccccCCCCCCCCCCCCCCccccc-CCcCccCCCch
Q 000067 1828 TLNKQVRHFTGTGNTPMMYPLQPVIEEI-EKEAVDDCDVR 1866 (2445)
Q Consensus 1828 tLNkqVR~f~GcG~tP~~c~ckPViECs-eC~CgeeC~NR 1866 (2445)
....|...|... .....+++||. .|.|+..|.||
T Consensus 69 ----~~~~Y~~~g~l~-~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 69 ----GIFAYDSNGRLR-IPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp ----SS-SB-TTSSBS-SSSTSEEE---TTSSS-TTSTT-
T ss_pred ----ccccccCCCcCc-cCCCCeEEeCCCCCCCCCCCCCC
Confidence 000111111111 22355689995 79999999997
No 43
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=81.70 E-value=0.49 Score=58.06 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=25.3
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000067 403 IYDRHGRSPSHSDRSPHDRGRYYDHRDRSPSRHDRSP 439 (2445)
Q Consensus 403 ~y~rr~rsps~~~rsp~DR~R~~~~r~RSP~rr~Rs~ 439 (2445)
+|.+|.|..-+++|..+++-++|+||+.|++||.++.
T Consensus 430 ~~~kR~rt~nkssrr~r~~d~hyS~~~~~e~rr~~~d 466 (479)
T KOG0415|consen 430 SRRKRERTRNKSSRRERDEDDHYSHRDKSEERRERYD 466 (479)
T ss_pred hHHHhhhhccccccccccccccchhcccchhhcccch
Confidence 3445555566666777777778888888888766555
No 44
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=78.76 E-value=1.1 Score=39.57 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=28.4
Q ss_pred cccccchHHHHHHHHHhhhhhhhHHhhcchhhHHHHHh
Q 000067 1255 WGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR 1292 (2445)
Q Consensus 1255 w~ll~g~~lar~fh~lr~d~ksl~~~~~tc~~w~~a~~ 1292 (2445)
|.-|.-.++..||.+| |.++++..+.||++|+.++.
T Consensus 3 ~~~LP~~il~~Il~~l--~~~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 3 LSDLPDEILQEILSYL--DPKDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHHS-HHHHHHHHHTS---HHHHHHHCTT-HHHHHHHT
T ss_pred HHHCCHHHHHHHHHHC--cHHHHHHHHHHhhHHHHHHc
Confidence 4556667899999887 78899999999999999985
No 45
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=78.54 E-value=3.5 Score=50.85 Aligned_cols=43 Identities=35% Similarity=0.539 Sum_probs=31.3
Q ss_pred ccCCCCCCCeEEEEEEECCEEEEEEEECCCCCCCC-eEEEecCCCCCC
Q 000067 1974 RICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGE-EITFDYNSVTES 2020 (2445)
Q Consensus 1974 FINHSCdPNCetq~v~VdGe~RIafFAlRDIkaGE-ELTFDYG~~~es 2020 (2445)
++||||.||+. ...++.. ..+++...+.+++ ||++.|-....+
T Consensus 208 ~~~hsC~pn~~---~~~~~~~-~~~~~~~~~~~~~~~l~~~y~~~~~~ 251 (482)
T KOG2084|consen 208 LFNHSCFPNIS---VIFDGRG-LALLVPAGIDAGEEELTISYTDPLLS 251 (482)
T ss_pred hcccCCCCCeE---EEECCce-eEEEeecccCCCCCEEEEeecccccC
Confidence 89999999998 3334443 4455666677766 999999877664
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=77.81 E-value=1.1 Score=56.62 Aligned_cols=115 Identities=27% Similarity=0.468 Sum_probs=78.7
Q ss_pred ccccccCccccccchHHHHHHHHHhhhhhhhHHhhcchhhHHHHHh---hhcccceeeeccCC-----C-------CCch
Q 000067 1247 SSAIESGGWGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR---FYKGISRQVDLSSV-----G-------PNCT 1311 (2445)
Q Consensus 1247 ~~~~~~~~w~ll~g~~lar~fh~lr~d~ksl~~~~~tc~~w~~a~~---~yk~~~~~~~~ss~-----g-------~~ct 1311 (2445)
-++-.+.+|.|.- .+|.+||-|| |+|||-=++.-|+-|+--|- .|.. +||... | ..|.
T Consensus 65 a~~~~~~~~~LPp-El~lkvFS~L--Dtksl~r~a~~c~~~n~~AlD~~~~q~----idL~t~~rDv~g~VV~~~~~Rcg 137 (483)
T KOG4341|consen 65 AADNNSISRSLPP-ELLLKVFSML--DTKSLCRAAQCCTMWNKLALDGSCWQH----IDLFTFQRDVDGGVVENMISRCG 137 (483)
T ss_pred hhhcccccccCCH-HHHHHHHHHH--hHHHHHHHHHHHHHhhhhhhcccccee----eehhcchhcCCCcceehHhhhhc
Confidence 4456677888764 6788999999 99999999999999986542 2222 222211 1 1121
Q ss_pred ---------------hHHHHHHHhhhcccccceeeecccccCChhHHHHHHHhCCCcceEeecccccccccccc
Q 000067 1312 ---------------DSLIRKTLNAFDKEKLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFGELALK 1370 (2445)
Q Consensus 1312 ---------------d~~~~~~~~~y~~~~~~~~~l~gc~~~~~~~l~~~l~~~p~~~~~~i~gc~q~~~l~~~ 1370 (2445)
|+-++. ++-+=-||.-|-|.||++||..-+..+-+-++.|.+|++-+|+..-++.++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt--~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRT--FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred cccccccccccccCCcchhhH--HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence 222222 222345677778888888888888888888888888888888887777666
No 47
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=77.22 E-value=2.2 Score=53.36 Aligned_cols=13 Identities=23% Similarity=0.202 Sum_probs=6.0
Q ss_pred cHHHHHHHHhhcc
Q 000067 1060 SFSELQVLVDQGC 1072 (2445)
Q Consensus 1060 sfseLQ~lv~~g~ 1072 (2445)
-|.||..=|.+.+
T Consensus 381 ~~~~~~~dv~~e~ 393 (457)
T TIGR01622 381 FDNEILDDVKEEC 393 (457)
T ss_pred HHHHHHHHHHHHH
Confidence 4455544444443
No 48
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=77.15 E-value=6 Score=41.29 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhcccccccch------------------hHHHHhhhccccccccCCcchhhhHHHHHHHHHHhccC
Q 000067 1481 MEEFLASSLKEIMRVNTFEFFVPK------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNR 1542 (2445)
Q Consensus 1481 ~e~f~~~~l~~im~~~~~dff~~k------------------v~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~ 1542 (2445)
++++|..-|.+||+......|.-- +..|+.|+++|+|.+ +..+..|+.-|+..|+.+-+.
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s--~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRT--LEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHCCC
Confidence 578899999999999888888743 367999999999987 789999999999999987544
Q ss_pred CCCCCccchhhHHHHHHHHhhccc
Q 000067 1543 GSAGDMNRITTLFIQLATRLEQGA 1566 (2445)
Q Consensus 1543 ~~~~~~~~i~~~~~~~~~~~~~~~ 1566 (2445)
+. .+.+.|..|+.-
T Consensus 80 ~s----------~~~~~A~~l~~~ 93 (98)
T cd05512 80 DT----------IFYRAAVRLRDQ 93 (98)
T ss_pred CC----------HHHHHHHHHHHh
Confidence 43 335666666543
No 49
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=75.01 E-value=7.3 Score=40.80 Aligned_cols=72 Identities=22% Similarity=0.384 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000067 1482 EEFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 1543 (2445)
Q Consensus 1482 e~f~~~~l~~im~~~~~dff~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~~ 1543 (2445)
.+.|..-|.+||+.....+|.=-| ..|..|+++|+|.+ +..+..||..||..|.++-.-+
T Consensus 3 ~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s--~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 3 QKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQS--IEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred HHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 456777889999988888886333 67899999999986 8899999999999999975444
Q ss_pred CCCCccchhhHHHHHHHHhhcc
Q 000067 1544 SAGDMNRITTLFIQLATRLEQG 1565 (2445)
Q Consensus 1544 ~~~~~~~i~~~~~~~~~~~~~~ 1565 (2445)
. .+.+.|.+|.+
T Consensus 81 s----------~~~~~A~~L~~ 92 (98)
T cd05513 81 T----------IYYKAAKKLLH 92 (98)
T ss_pred C----------HHHHHHHHHHH
Confidence 3 33456666643
No 50
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=74.18 E-value=2.2 Score=56.83 Aligned_cols=14 Identities=21% Similarity=0.005 Sum_probs=5.7
Q ss_pred cCCCCCCCCCcccc
Q 000067 500 RFHDRSDRTPNYLE 513 (2445)
Q Consensus 500 R~~drRdRTP~~~e 513 (2445)
||+.-..+||+-..
T Consensus 387 r~rytkly~Psd~~ 400 (1194)
T KOG4246|consen 387 RSRYTKLYTPSDKS 400 (1194)
T ss_pred hhhhccccCCcchh
Confidence 33333444444333
No 51
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=73.50 E-value=7.3 Score=48.38 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=8.0
Q ss_pred ccccccc--ccccccccc
Q 000067 222 FIPDRWH--KEVVKDEYG 237 (2445)
Q Consensus 222 fi~~rw~--~d~~k~e~~ 237 (2445)
|-| -|. .++-+.||.
T Consensus 203 ~~P-~Wf~~Fd~~k~eid 219 (367)
T KOG0835|consen 203 FQP-HWFKAFDTTKREID 219 (367)
T ss_pred CCc-cHHHHcCCcHHHHH
Confidence 444 344 366666663
No 52
>PF15440 THRAP3_BCLAF1: THRAP3/BCLAF1 family
Probab=72.56 E-value=9.7 Score=51.11 Aligned_cols=21 Identities=33% Similarity=0.189 Sum_probs=11.4
Q ss_pred ccchhHHHHHHHhcChHHHHHHHhh
Q 000067 1150 TRGKLHELVMKSYKNREFAAAINEV 1174 (2445)
Q Consensus 1150 trGkLHelvMKs~k~refaa~inev 1174 (2445)
..=-|||-.-++= =.|+.||+
T Consensus 487 s~mTL~ERFt~yq----~~a~e~e~ 507 (646)
T PF15440_consen 487 SGMTLNERFTKYQ----RKAAENEI 507 (646)
T ss_pred CCccHHHHHHHhh----hhhhHhhh
Confidence 3334777665554 23556665
No 53
>smart00444 GYF Contains conserved Gly-Tyr-Phe residues. Proline-binding domain in CD2-binding protein. Contains conserved Gly-Tyr-Phe residues.
Probab=70.58 E-value=3.8 Score=39.15 Aligned_cols=43 Identities=23% Similarity=0.406 Sum_probs=40.0
Q ss_pred cEEEeccCCcccCchhhhhhhhhhhcCcccccchhhccCCCCc
Q 000067 642 KWFYLDHCGMECGPSRLCDLKTLVEEGVLVSDHFIKHLDSNRW 684 (2445)
Q Consensus 642 kWfyld~~G~e~gp~~l~~lk~l~~~g~l~~dh~ikh~d~~rw 684 (2445)
.|+|.|..|..|||=--..+..--++|++-.+..|++.+....
T Consensus 2 ~W~Y~d~~~~iqGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~ 44 (56)
T smart00444 2 LWLYKDPDGEIQGPFTASQMSQWYQAGYFPDSLQIKRLNEPPY 44 (56)
T ss_pred EEEEECCCCCEeCCcCHHHHHHHHHCCCCCCCeEEEEcCCCCC
Confidence 5999999999999999999999999999999999999987733
No 54
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=70.27 E-value=21 Score=42.43 Aligned_cols=8 Identities=75% Similarity=0.916 Sum_probs=3.4
Q ss_pred CCCCcCCC
Q 000067 452 SPYSRERS 459 (2445)
Q Consensus 452 Sp~~R~RS 459 (2445)
+|+.|.|+
T Consensus 168 ~~rsRSRs 175 (256)
T KOG4207|consen 168 SPRSRSRS 175 (256)
T ss_pred Cccccccc
Confidence 34444443
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=64.89 E-value=7.4 Score=47.60 Aligned_cols=64 Identities=28% Similarity=0.477 Sum_probs=49.9
Q ss_pred eeeccCCCCCchhHHHHHHHhhhcccccceeeecccccCChhHHHHHHHhCCCcceEeecccccccc
Q 000067 1300 QVDLSSVGPNCTDSLIRKTLNAFDKEKLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFGE 1366 (2445)
Q Consensus 1300 ~~~~ss~g~~ctd~~~~~~~~~y~~~~~~~~~l~gc~~~~~~~l~~~l~~~p~~~~~~i~gc~q~~~ 1366 (2445)
.+||+.-+. .||..|-.+.+. =-+++.+-|.+|.++|...|..|...+|.|.+++|.+|.++.+
T Consensus 247 ~l~l~~~~~-isd~~l~~l~~~--c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 247 SLDLSGCGL-VTDIGLSALASR--CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred ccchhhhhc-cCchhHHHHHhh--CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 344443332 788888877765 2378888888999999999999999999999999999998743
No 56
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=63.41 E-value=16 Score=39.08 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000067 1485 LASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 1543 (2445)
Q Consensus 1485 ~~~~l~~im~~~~~dff~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~~ 1543 (2445)
|.--+.+||+.-.+..|+=.| ..|+.|+++|+|.+ ...+..|+..|+..|..+-+.+
T Consensus 5 l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s--~~ef~~Dv~li~~Na~~yN~~~ 79 (112)
T cd05511 5 LDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQS--REEFLEDIELIVDNSVLYNGPD 79 (112)
T ss_pred HHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 444566777777776665444 67999999999976 6889999999999998874433
No 57
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=63.41 E-value=6 Score=52.65 Aligned_cols=9 Identities=22% Similarity=1.021 Sum_probs=4.3
Q ss_pred ccccccc-cc
Q 000067 219 KGEFIPD-RW 227 (2445)
Q Consensus 219 KGEfi~~-rw 227 (2445)
-|-||+- +|
T Consensus 664 ~~q~vstskw 673 (877)
T KOG0151|consen 664 EGQAVSTSKW 673 (877)
T ss_pred cccccchhhh
Confidence 3445554 45
No 58
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=62.47 E-value=6.9 Score=38.25 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=33.4
Q ss_pred hHHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCCC
Q 000067 1505 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGS 1544 (2445)
Q Consensus 1505 v~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~~~ 1544 (2445)
+..|..|+++|+|.+ +..+..|+.+|+..|+.+.+.++
T Consensus 39 L~~I~~kl~~~~Y~s--~~~f~~Dv~~i~~Na~~yn~~~s 76 (84)
T PF00439_consen 39 LSTIRKKLENGKYKS--IEEFEADVRLIFQNARRYNPPDS 76 (84)
T ss_dssp HHHHHHHHHTTSSSS--HHHHHHHHHHHHHHHHHHSCTTS
T ss_pred hhhhhHHhhccchhh--HHHHHHHHHHHHHHHHHHCCCcC
Confidence 578999999999986 88999999999999999866554
No 59
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=60.81 E-value=2.2 Score=48.69 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=11.5
Q ss_pred CCCCchhhccccccCCCC
Q 000067 609 DGPPLEELVSMEEDMDIC 626 (2445)
Q Consensus 609 ~~pppeEl~SmeeDmDIc 626 (2445)
+|..+|| +-|-.=|-||
T Consensus 137 eg~eeEe-iEMmk~MGf~ 153 (196)
T KOG3263|consen 137 EGKEEEE-IEMMKIMGFS 153 (196)
T ss_pred cCCCHHH-HHHHHHhCcC
Confidence 4444555 6788888888
No 60
>smart00297 BROMO bromo domain.
Probab=59.27 E-value=25 Score=35.88 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccccch------------------hHHHHhhhccccccccCCcchhhhHHHHHHHHHH
Q 000067 1477 GYKRMEEFLASSLKEIMRVNTFEFFVPK------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIK 1538 (2445)
Q Consensus 1477 ~y~~~e~f~~~~l~~im~~~~~dff~~k------------------v~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~ 1538 (2445)
..++|...|..-+..|++.-.+..|.-. ...|+.|+++|+|.+ +..+..|+..|...|+.
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s--~~ef~~D~~li~~Na~~ 81 (107)
T smart00297 4 LQKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSS--VEEFVADVQLMFSNAKT 81 (107)
T ss_pred hHHHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHH
Confidence 4577778888888888876555666521 357899999999954 77889999999999998
Q ss_pred hccCC
Q 000067 1539 AKNRG 1543 (2445)
Q Consensus 1539 ~k~~~ 1543 (2445)
+-+.+
T Consensus 82 ~n~~~ 86 (107)
T smart00297 82 YNGPD 86 (107)
T ss_pred HCCCC
Confidence 75543
No 61
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=58.03 E-value=21 Score=34.84 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=32.0
Q ss_pred hHHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000067 1505 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 1543 (2445)
Q Consensus 1505 v~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~~ 1543 (2445)
...|+.|+++|+|. .+..+..||..|+..|+.+.+.+
T Consensus 45 l~~I~~kl~~~~Y~--s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 45 LSTIKKKLKNGEYK--SLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHCCCC
Confidence 36799999999995 67888999999999999986655
No 62
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=57.36 E-value=28 Score=36.45 Aligned_cols=60 Identities=22% Similarity=0.423 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhccccccc----ch----------------hHHHHhhhccccccccCCcchhhhHHHHHHHHHHhcc
Q 000067 1482 EEFLASSLKEIMRVNTFEFFV----PK----------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1541 (2445)
Q Consensus 1482 e~f~~~~l~~im~~~~~dff~----~k----------------v~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~ 1541 (2445)
-+|+..-|..||+.-...-|. |. ...|+.|+++|.|. -+..+..||..|+..|..+-+
T Consensus 6 ~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~--s~~~f~~D~~li~~Na~~yN~ 83 (103)
T cd05500 6 HKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYT--SVEEFTADFNLMVDNCLTFNG 83 (103)
T ss_pred HHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHCC
Confidence 467888899999887776665 22 36799999999995 567899999999999998754
Q ss_pred CC
Q 000067 1542 RG 1543 (2445)
Q Consensus 1542 ~~ 1543 (2445)
.+
T Consensus 84 ~~ 85 (103)
T cd05500 84 PE 85 (103)
T ss_pred CC
Confidence 44
No 63
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=56.11 E-value=33 Score=36.53 Aligned_cols=73 Identities=18% Similarity=0.239 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhccccccc----ch----------------hHHHHhhhccccccccCCcchhhhHHHHHHHHHHhc
Q 000067 1481 MEEFLASSLKEIMRVNTFEFFV----PK----------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAK 1540 (2445)
Q Consensus 1481 ~e~f~~~~l~~im~~~~~dff~----~k----------------v~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k 1540 (2445)
|..++..-|..||+......|. |+ ...|+.|+++|+|.+ +..+..||..|+..|..+-
T Consensus 6 ~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s--~~ef~~D~~li~~Na~~yN 83 (107)
T cd05497 6 LQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWS--ASECIQDFNTMFTNCYIYN 83 (107)
T ss_pred HHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCC--HHHHHHHHHHHHHHHHHHC
Confidence 4445556688899877766664 22 267999999999975 4588999999999999975
Q ss_pred cCCCCCCccchhhHHHHHHHHhhcc
Q 000067 1541 NRGSAGDMNRITTLFIQLATRLEQG 1565 (2445)
Q Consensus 1541 ~~~~~~~~~~i~~~~~~~~~~~~~~ 1565 (2445)
+-++ .|.++|..|+.
T Consensus 84 ~~~s----------~i~~~A~~l~~ 98 (107)
T cd05497 84 KPGD----------DVVLMAQTLEK 98 (107)
T ss_pred CCCC----------HHHHHHHHHHH
Confidence 5443 23466666553
No 64
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=56.04 E-value=29 Score=37.31 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000067 1482 EEFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 1543 (2445)
Q Consensus 1482 e~f~~~~l~~im~~~~~dff~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~~ 1543 (2445)
--+|..-|..||+.-.+..|.--| ..|+.|+++|+|.+ ...+..||..|+..|..+-+.+
T Consensus 5 r~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s--~~ef~~Dv~li~~Na~~yN~~~ 82 (112)
T cd05528 5 RLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLT--AKDFLKDIDLIVTNALEYNPDR 82 (112)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 346777888888887777776555 57899999999976 6688999999999998875443
Q ss_pred CCCCccchhhHHHHHHHHhhc
Q 000067 1544 SAGDMNRITTLFIQLATRLEQ 1564 (2445)
Q Consensus 1544 ~~~~~~~i~~~~~~~~~~~~~ 1564 (2445)
.. .-+.|.+.|..|+
T Consensus 83 s~------~~s~i~~~A~~L~ 97 (112)
T cd05528 83 DP------ADKLIRSRACELR 97 (112)
T ss_pred Cc------cccHHHHHHHHHH
Confidence 21 1223445666664
No 65
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=56.02 E-value=7.4 Score=49.92 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=30.6
Q ss_pred ccCCCCCCCeEEEEEEECCEEEEEEEECCCCCCCCeEEEecCC
Q 000067 1974 RICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNS 2016 (2445)
Q Consensus 1974 FINHSCdPNCetq~v~VdGe~RIafFAlRDIkaGEELTFDYG~ 2016 (2445)
+.||+|++ +....... ...+-+++.++|.+||||.+.||.
T Consensus 239 ~~NH~~~~-~~~~~~~~--d~~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 239 LLNHSPEV-IKAGYNQE--DEAVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred hhccCchh-ccccccCC--CCcEEEEEeeeecCCCeEEEecCC
Confidence 78999999 22211112 238889999999999999999997
No 66
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=54.84 E-value=29 Score=36.62 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhhHHHHHHHHHHhcc
Q 000067 1480 RMEEFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1541 (2445)
Q Consensus 1480 ~~e~f~~~~l~~im~~~~~dff~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~ 1541 (2445)
-+.+.+..-|..||+......|.=.| ..|+.|+++|+|.+ +..+..|+..|+..|+.+-+
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s--~~ef~~D~~li~~Na~~yN~ 80 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRS--TAEFQRDVLLMFQNAIMYNS 80 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 35678888999999888777776433 56999999999964 68899999999999988743
No 67
>PF15440 THRAP3_BCLAF1: THRAP3/BCLAF1 family
Probab=52.12 E-value=90 Score=42.49 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=12.9
Q ss_pred ccccceeeec-cchhHHHHHHHhcChHH
Q 000067 1141 TMHPQFIGYT-RGKLHELVMKSYKNREF 1167 (2445)
Q Consensus 1141 ~~hpqf~gyt-rGkLHelvMKs~k~ref 1167 (2445)
+||=-|-=|- ++-.-| ||.=|+-|+
T Consensus 490 TL~ERFt~yq~~a~e~e--~k~~ksPEI 515 (646)
T PF15440_consen 490 TLNERFTKYQRKAAENE--IKPRKSPEI 515 (646)
T ss_pred cHHHHHHHhhhhhhHhh--hhccCCccc
Confidence 5666666665 333322 366666543
No 68
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=49.51 E-value=41 Score=35.31 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCCC
Q 000067 1483 EFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGS 1544 (2445)
Q Consensus 1483 ~f~~~~l~~im~~~~~dff~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~~~ 1544 (2445)
++...-|.+||+--....|.=.| .-|+.|+++|.|.+- ..+..|+.-|+..|.++-+.+.
T Consensus 3 ~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~--~ef~~D~~li~~Na~~yN~~~s 80 (97)
T cd05505 3 QKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSV--QEFLDDMKLVFSNAEKYYENGS 80 (97)
T ss_pred HHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCH--HHHHHHHHHHHHHHHHHCCCCC
Confidence 35556678888866666665433 578999999999774 6889999999999998855444
Q ss_pred CCCccchhhHHHHHHHHhhcc
Q 000067 1545 AGDMNRITTLFIQLATRLEQG 1565 (2445)
Q Consensus 1545 ~~~~~~i~~~~~~~~~~~~~~ 1565 (2445)
.|.++|..|+.
T Consensus 81 ----------~i~~~a~~le~ 91 (97)
T cd05505 81 ----------YVLSCMRKTEQ 91 (97)
T ss_pred ----------HHHHHHHHHHH
Confidence 34677776653
No 69
>KOG1869 consensus Splicing coactivator SRm160/300, subunit SRm300 [RNA processing and modification]
Probab=48.89 E-value=42 Score=42.84 Aligned_cols=8 Identities=25% Similarity=0.584 Sum_probs=3.1
Q ss_pred CCCCCCcC
Q 000067 387 DKYSSRHH 394 (2445)
Q Consensus 387 e~ysrr~~ 394 (2445)
+.|++|.-
T Consensus 242 ks~k~rke 249 (425)
T KOG1869|consen 242 KSYKRRKE 249 (425)
T ss_pred hhhccccc
Confidence 33444433
No 70
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=47.95 E-value=38 Score=36.43 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhcccccccch------------------hHHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000067 1482 EEFLASSLKEIMRVNTFEFFVPK------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 1543 (2445)
Q Consensus 1482 e~f~~~~l~~im~~~~~dff~~k------------------v~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~~ 1543 (2445)
-+++..-|.+||+......|+=. +..|+.|+++|+|.+ +..+..|+..|...|..+-+.+
T Consensus 14 ~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s--~~~f~~Dv~LI~~Na~~yN~~~ 91 (115)
T cd05504 14 LSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKL--AEEFLSDIQLVFSNCFLYNPEH 91 (115)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 36777788889987777666432 367899999999977 6688999999999999875544
Q ss_pred C
Q 000067 1544 S 1544 (2445)
Q Consensus 1544 ~ 1544 (2445)
.
T Consensus 92 s 92 (115)
T cd05504 92 T 92 (115)
T ss_pred C
Confidence 3
No 71
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=47.51 E-value=42 Score=34.85 Aligned_cols=59 Identities=14% Similarity=0.222 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcccccccch------------------hHHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000067 1483 EFLASSLKEIMRVNTFEFFVPK------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 1543 (2445)
Q Consensus 1483 ~f~~~~l~~im~~~~~dff~~k------------------v~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~~ 1543 (2445)
.|...-|.+||+.-..+.|+=- +..|+.|+++|+|.+ +..+..|+..|...|.++-+-+
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s--~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 3 ALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKT--LEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 4677788899998888877622 367999999999954 5778999999999998874443
No 72
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=45.89 E-value=5 Score=45.91 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=5.7
Q ss_pred ccccCCCCCCCCC
Q 000067 497 DRARFHDRSDRTP 509 (2445)
Q Consensus 497 dRsR~~drRdRTP 509 (2445)
||-|++-+|.+||
T Consensus 77 dR~R~~r~rs~Sp 89 (196)
T KOG3263|consen 77 DRERKKRRRSVSP 89 (196)
T ss_pred HHHHHhhhcccCC
Confidence 3344444444444
No 73
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=42.56 E-value=56 Score=35.23 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=30.3
Q ss_pred HHHHhhhccccccccCCcchhhhHHHHHHHHHHhcc
Q 000067 1506 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1541 (2445)
Q Consensus 1506 ~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~ 1541 (2445)
..|+.|+++|.|.+ +..+..|+.-|+..|+.+-+
T Consensus 52 ~tI~~kl~~~~Y~s--~~ef~~D~~Li~~N~~~yN~ 85 (112)
T cd05510 52 GTMLKKLKNLQYKS--KAEFVDDLNLIWKNCLLYNS 85 (112)
T ss_pred HHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 67999999999987 78999999999999988743
No 74
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=41.76 E-value=70 Score=34.15 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHh-ccccccc----ch----------------hHHHHhhhccccccccCCcchhhhHHHHHHHHHHhcc
Q 000067 1483 EFLASSLKEIMRV-NTFEFFV----PK----------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1541 (2445)
Q Consensus 1483 ~f~~~~l~~im~~-~~~dff~----~k----------------v~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~ 1541 (2445)
..|..-|..+|+. -....|. |+ ...|+.|+++|.|.+ +..+..|+..|+..|..+-+
T Consensus 6 ~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s--~~ef~~D~~li~~Na~~yN~ 83 (108)
T cd05495 6 QALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQD--PWQYVDDVWLMFDNAWLYNR 83 (108)
T ss_pred HHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 4455667777777 3334333 22 367999999999986 78899999999999999854
Q ss_pred CC
Q 000067 1542 RG 1543 (2445)
Q Consensus 1542 ~~ 1543 (2445)
.+
T Consensus 84 ~~ 85 (108)
T cd05495 84 KT 85 (108)
T ss_pred CC
Confidence 43
No 75
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=41.65 E-value=8.5 Score=48.01 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=9.7
Q ss_pred CCCCCcCCCCCCcCCCcc
Q 000067 479 RHYDHRNRSPFSAERSPQ 496 (2445)
Q Consensus 479 r~~~~R~RSP~r~erSP~ 496 (2445)
.|.++|+.++.|+++-++
T Consensus 450 ~hyS~~~~~e~rr~~~dR 467 (479)
T KOG0415|consen 450 DHYSHRDKSEERRERYDR 467 (479)
T ss_pred ccchhcccchhhcccchh
Confidence 445555555555555553
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=39.01 E-value=46 Score=40.95 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=69.6
Q ss_pred ccccccchHHHHHHHHHhhhhh---hhHHhh--cchhhHHHHHhhhcccceeeeccC-CCCCchhHHHHHHHhhhccccc
Q 000067 1254 GWGLLDGHTLAHVFHFLRSDMK---SLAFAS--LTCRHWRAAVRFYKGISRQVDLSS-VGPNCTDSLIRKTLNAFDKEKL 1327 (2445)
Q Consensus 1254 ~w~ll~g~~lar~fh~lr~d~k---sl~~~~--~tc~~w~~a~~~yk~~~~~~~~ss-~g~~ctd~~~~~~~~~y~~~~~ 1327 (2445)
.|......+...+.|.+-.... .|.+.. .....|..++-.+..-...+||+. ....+........+.. .-.++
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L 245 (482)
T KOG1947|consen 167 SLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS-ICRKL 245 (482)
T ss_pred eeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh-hcCCc
Confidence 4444445555555555554433 333321 112233566667777778888876 2222222222222222 23788
Q ss_pred ceeeecccccCChhHHHHHHHhCCCcceEeeccccc
Q 000067 1328 NSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQ 1363 (2445)
Q Consensus 1328 ~~~~l~gc~~~~~~~l~~~l~~~p~~~~~~i~gc~q 1363 (2445)
+.+-|.+|.+||..+|+.+...+|.|.++.+.+|.+
T Consensus 246 ~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 246 KSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSN 281 (482)
T ss_pred CccchhhhhccCchhHHHHHhhCCCcceEccCCCCc
Confidence 999999999999999999999999999999999997
No 77
>smart00466 SRA SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
Probab=38.90 E-value=7.7 Score=43.93 Aligned_cols=24 Identities=29% Similarity=0.037 Sum_probs=20.9
Q ss_pred cCCCCcccccccc-----cccccccccCC
Q 000067 1695 TTDEGLDFSDDRE-----WGARMTKASLV 1718 (2445)
Q Consensus 1695 ~~~dgl~~i~~~~-----~G~~m~k~~lv 1718 (2445)
+.|||||.|.+.| .|..++|++|+
T Consensus 122 yrYDGLY~V~~~w~e~g~~G~~v~kfkL~ 150 (155)
T smart00466 122 YIYDGLYRIVDYWREVGKSGFLVFKFKLV 150 (155)
T ss_pred EEECcEEEEEEEEEecCCCCcEEEEEEEE
Confidence 4579999998777 78899999997
No 78
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=35.78 E-value=27 Score=38.42 Aligned_cols=38 Identities=34% Similarity=0.566 Sum_probs=31.3
Q ss_pred cccchhHHHHhhhccccccccCCcchhhhHHHHHHHHHHh
Q 000067 1500 FFVPKVAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKA 1539 (2445)
Q Consensus 1500 ff~~kv~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~ 1539 (2445)
||---+..||.||.+|||.. ......||.+|..+|.++
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~t--p~~F~~DiklI~~Nc~~y 99 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYAT--PKDFLKDIKRIVRDAKTI 99 (119)
T ss_pred EeccCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHh
Confidence 34445899999999999986 455678999999999885
No 79
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=35.47 E-value=28 Score=44.96 Aligned_cols=60 Identities=28% Similarity=0.512 Sum_probs=48.1
Q ss_pred chhHHHHHHH--hhhccc--cc-----------------------ceeeecccccCChhHHHHHHHhCCCcceEeecccc
Q 000067 1310 CTDSLIRKTL--NAFDKE--KL-----------------------NSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCG 1362 (2445)
Q Consensus 1310 ctd~~~~~~~--~~y~~~--~~-----------------------~~~~l~gc~~~~~~~l~~~l~~~p~~~~~~i~gc~ 1362 (2445)
|++.-+..|+ ++|+.+ ++ ..+-..+||++|...|..+-...+.|..+.|.||.
T Consensus 252 C~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 252 CLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred cccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence 8888887776 677432 22 33456789999999999999999999999999999
Q ss_pred ccccccc
Q 000067 1363 QFGELAL 1369 (2445)
Q Consensus 1363 q~~~l~~ 1369 (2445)
||++.-.
T Consensus 332 ~fsd~~f 338 (483)
T KOG4341|consen 332 QFSDRGF 338 (483)
T ss_pred hhhhhhh
Confidence 9998643
No 80
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=33.40 E-value=28 Score=35.84 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=34.5
Q ss_pred hhhhhcc-ccCCCccccCCcccccccccccccCCc----ceeeeecCcCccc
Q 000067 1752 YAEKLNA-QKNGSEELDMELPEVKDYKPRKQLGDQ----VFEQEVYGIDPYT 1798 (2445)
Q Consensus 1752 ~~Ekl~~-~~ngtde~~~~~P~vK~YkprKvlG~D----V~Eqe~~GcDcyT 1798 (2445)
+.|.+|+ ++|.+| ....|.-.+|.++.+.+.. ..+....||+|..
T Consensus 7 G~E~~pI~~vN~vD--~~~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~ 56 (98)
T smart00468 7 GKENVPVPLVNEVD--EDPPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSG 56 (98)
T ss_pred CccCCCcceEecCC--CCCCCCCcEECcceEcCCCcccccCCCCCCCCcCCC
Confidence 7899998 889988 3355667777777777774 4678888999987
No 81
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=33.03 E-value=23 Score=37.77 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=5.5
Q ss_pred CCCCCCCccccc
Q 000067 169 PEKSQPQSQLQS 180 (2445)
Q Consensus 169 ~e~~~~~~~~~~ 180 (2445)
||+.+|.|+|+-
T Consensus 101 eekkegkgeieg 112 (138)
T PF05663_consen 101 EEKKEGKGEIEG 112 (138)
T ss_pred hhhcccCCcccc
Confidence 444444444443
No 82
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=32.84 E-value=1.1e+02 Score=32.41 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=31.0
Q ss_pred HHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000067 1506 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 1543 (2445)
Q Consensus 1506 ~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~~ 1543 (2445)
..|+.|+++|+|.+ +..+..||..|+..|..+-+-+
T Consensus 46 ~tI~~kl~~~~Y~s--~~ef~~Dv~LI~~Na~~YN~~~ 81 (99)
T cd05508 46 STLEKNVRKKAYGS--TDAFLADAKWILHNAIIYNGGD 81 (99)
T ss_pred HHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 67899999999977 7789999999999998874443
No 83
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=32.10 E-value=31 Score=27.20 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=17.4
Q ss_pred CcceEeeccccccccccccCCc
Q 000067 1352 HLSSIDIRGCGQFGELALKFPN 1373 (2445)
Q Consensus 1352 ~~~~~~i~gc~q~~~l~~~f~~ 1373 (2445)
.|.++||+|| +|.++...|.+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4789999999 98888877765
No 84
>PF14878 DLD: Death-like domain of SPT6; PDB: 3PSI_A 3PSF_A.
Probab=31.84 E-value=47 Score=36.45 Aligned_cols=87 Identities=23% Similarity=0.318 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHH---HHh----hCcHHHHhhhHHHhhhhhccchhhhhcchHHHHHhhhhhccceeeeeeehhHHH
Q 000067 2098 NWVVAYSARLVRFINL---ERT----KLPEEILRHNLEEKRKYFSDICLEVEKSDAEVQAEGVYNQRLQNLAVTLDKVRY 2170 (2445)
Q Consensus 2098 ~WL~k~aA~ilryI~~---Er~----~Lp~ell~~~l~ekrK~~~~~~~~~e~~dAeieA~gv~~~RiQNlaiTLDKVRy 2170 (2445)
+|..+-|+.++++-.. |.. .+ ++++.. .....+.+++|+ .=|..+-.+.-+|--.||--||-
T Consensus 15 ~lArkmA~DAle~deed~~~~~~~~~av-~~~~~~---~~p~kL~~LdLd-------~yA~~Le~~~~~~K~~TL~~Ir~ 83 (115)
T PF14878_consen 15 DLARKMAADALEYDEEDIAEDEDPSGAV-EEIMED---DRPEKLNDLDLD-------EYAEELERQGGGNKRATLYDIRS 83 (115)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHH-HT-T-THHHHT---THHHHHTTS-HH-------HHHHHHHHHHS---HHHHHHHHH
T ss_pred HHHHHHHHHHHhcChhhhcchhhHHHHH-HHHHcc---ccHHHHhhcCHH-------HHHHHHHHhcCCcHHHHHHHHHH
Confidence 5777888888776543 111 11 222331 122233444443 23455555677888999999999
Q ss_pred HHhhccCCCCCCCCCcccCChHHHHHHH
Q 000067 2171 VMRCVFGDPKKAPPPVERLSPEETVSFL 2198 (2445)
Q Consensus 2171 vL~~~~gdp~~a~PPL~~Lt~~evv~~L 2198 (2445)
-|++.|.+. .+||..+|++|+|.-|
T Consensus 84 EL~~pf~d~---R~~f~~pt~de~F~ml 108 (115)
T PF14878_consen 84 ELQHPFEDL---RKPFREPTPDEIFTML 108 (115)
T ss_dssp HHHSTT------SB----B-HHHHHHHH
T ss_pred HHhCccccc---ccCCCCCCHHHhhhHh
Confidence 999987554 4799999999998654
No 85
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=30.70 E-value=45 Score=30.35 Aligned_cols=38 Identities=21% Similarity=0.429 Sum_probs=27.6
Q ss_pred ccceeeecccccCChhHHHHHHHhCCCcceEeeccccccccc
Q 000067 1326 KLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFGEL 1367 (2445)
Q Consensus 1326 ~~~~~~l~gc~~~~~~~l~~~l~~~p~~~~~~i~gc~q~~~l 1367 (2445)
+++.+.|.+| +|+. |...|..+|.|.+++++|| +|-++
T Consensus 2 ~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITD--LPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCC-CCcc--cCchHhCCCCCCEEEecCC-CCCCC
Confidence 5667777766 6663 6666899999999999999 56554
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.62 E-value=37 Score=40.59 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=46.1
Q ss_pred chhHHHHHH--HhhhcccccceeeecccccCChhHHHHHHHhCCCcceEeeccccccc
Q 000067 1310 CTDSLIRKT--LNAFDKEKLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFG 1365 (2445)
Q Consensus 1310 ctd~~~~~~--~~~y~~~~~~~~~l~gc~~~~~~~l~~~l~~~p~~~~~~i~gc~q~~ 1365 (2445)
|+|+-|-++ =|==+-..|+++.|.-|.++....|+.+-..+|+|+.+||.||-+.-
T Consensus 108 Asds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 108 ASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred cCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 566544433 23345688999999999999999999999999999999999998843
No 87
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=29.45 E-value=32 Score=26.48 Aligned_cols=11 Identities=55% Similarity=1.467 Sum_probs=9.9
Q ss_pred cceEEecCCCC
Q 000067 1044 GEWYYLDGAGH 1054 (2445)
Q Consensus 1044 GdWyYlDg~G~ 1054 (2445)
|.|||++..|.
T Consensus 8 ~~wYy~~~~G~ 18 (19)
T PF01473_consen 8 GNWYYFDSDGY 18 (19)
T ss_dssp TEEEEETTTSB
T ss_pred CEEEEeCCCcc
Confidence 89999999885
No 88
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=28.56 E-value=71 Score=34.12 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=32.9
Q ss_pred hHHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCCC
Q 000067 1505 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGS 1544 (2445)
Q Consensus 1505 v~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~~~ 1544 (2445)
+..|+.++++|.|.+ +..+..|+..|+..|.++-..++
T Consensus 51 L~tI~~kl~~~~Y~s--~~ef~~D~~l~f~Na~~yn~~~S 88 (106)
T cd05525 51 LSTIEKQILTGYYKT--PEAFDSDMLKVFRNAEKYYGRKS 88 (106)
T ss_pred HHHHHHHHcCCCCCC--HHHHHHHHHHHHHHHHHHCCCCC
Confidence 578999999999987 88899999999999998755444
No 89
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=28.52 E-value=1.1e+02 Score=31.80 Aligned_cols=59 Identities=17% Similarity=0.297 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcccccccc---h---------------hHHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000067 1483 EFLASSLKEIMRVNTFEFFVP---K---------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 1543 (2445)
Q Consensus 1483 ~f~~~~l~~im~~~~~dff~~---k---------------v~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~~ 1543 (2445)
.+|..-|..||+.-....|.= + ...|+.|+++|+|. -+..+..||..|+..|..+-+.+
T Consensus 4 ~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~--s~~~f~~Dv~li~~Na~~yN~~~ 80 (101)
T cd05509 4 TQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYV--TLEEFVADLKLIFDNCRLYNGPD 80 (101)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHCCCC
Confidence 455566777777766666641 1 35799999999996 46788999999999998874443
No 90
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=27.88 E-value=1.4e+02 Score=31.17 Aligned_cols=60 Identities=20% Similarity=0.464 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhc----ccccccc--h-----------------hHHHHhhhccccccccCCcchhhhHHHHHHHHHHh
Q 000067 1483 EFLASSLKEIMRVN----TFEFFVP--K-----------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKA 1539 (2445)
Q Consensus 1483 ~f~~~~l~~im~~~----~~dff~~--k-----------------v~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~ 1539 (2445)
+|...-|.++|+.- .--|.-| + ...|+.|+++|.|. -+..+..|+..|...|..+
T Consensus 3 ~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~--s~~ef~~D~~li~~N~~~y 80 (102)
T cd05499 3 KFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQ--SAKEFERDVRLIFKNCYTF 80 (102)
T ss_pred HHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCC--CHHHHHHHHHHHHHHHHHH
Confidence 45667788888842 2334333 2 36799999999995 4668889999999999887
Q ss_pred ccCCC
Q 000067 1540 KNRGS 1544 (2445)
Q Consensus 1540 k~~~~ 1544 (2445)
-+.+.
T Consensus 81 n~~~s 85 (102)
T cd05499 81 NPEGT 85 (102)
T ss_pred CCCCC
Confidence 55443
No 91
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=26.41 E-value=84 Score=32.70 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=31.7
Q ss_pred hHHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000067 1505 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 1543 (2445)
Q Consensus 1505 v~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~~ 1543 (2445)
...|+.|+++|.|. .+..+..||..|+..|..+-+.+
T Consensus 48 l~~I~~kl~~~~Y~--s~~ef~~D~~li~~Na~~yn~~~ 84 (102)
T cd05498 48 LSTIKKKLDNREYA--DAQEFAADVRLMFSNCYKYNPPD 84 (102)
T ss_pred HHHHHHHHccCCCC--CHHHHHHHHHHHHHHHHHHCCCC
Confidence 47899999999996 57889999999999999875544
No 92
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=26.04 E-value=1.8e+02 Score=30.18 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=42.4
Q ss_pred HHHHHHHHHhccccccc----ch----------------hHHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000067 1486 ASSLKEIMRVNTFEFFV----PK----------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 1543 (2445)
Q Consensus 1486 ~~~l~~im~~~~~dff~----~k----------------v~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~~ 1543 (2445)
..-|.++|+......|. |. ...|+.|+++|.|.+ +..+..|+..|...|+.+-+-+
T Consensus 6 ~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s--~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 6 GTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSS--PEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 44567778776666664 21 357999999999987 7788999999999998874443
No 93
>KOG1862 consensus GYF domain containing proteins [General function prediction only]
Probab=25.82 E-value=75 Score=43.17 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=46.4
Q ss_pred cEEEeccCCcccCchhhhhhhhhhhcCcccccchhhccCCCC---ceeeeccCCCcc
Q 000067 642 KWFYLDHCGMECGPSRLCDLKTLVEEGVLVSDHFIKHLDSNR---WETVENAVSPLV 695 (2445)
Q Consensus 642 kWfyld~~G~e~gp~~l~~lk~l~~~g~l~~dh~ikh~d~~r---w~t~e~a~sp~~ 695 (2445)
.|+|.|.-|.=+||-...++-.--..||...||.|+-.+... ..|+.=....+.
T Consensus 205 ~~~Y~DP~g~iqGPf~~~~v~~W~~~GyF~~~l~vr~~e~~~~~~f~tl~~~~~~l~ 261 (673)
T KOG1862|consen 205 SWLYKDPQGQIQGPFSASDVLQWYEAGYFPDDLQVRLGENPERSIFQTLGEVMQLLK 261 (673)
T ss_pred eEEeeCCCCcccCCchHHHHHHHHhcCccCCCceeeeccCCccccceehhhhhhhcc
Confidence 699999999999999999999999999999998888888887 777655444444
No 94
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=25.19 E-value=47 Score=30.94 Aligned_cols=49 Identities=16% Similarity=0.353 Sum_probs=26.2
Q ss_pred CCcceEeeccccccccccc----cCCccceeecccccCcccCCcch-hhchhhhh
Q 000067 1351 PHLSSIDIRGCGQFGELAL----KFPNINWVKSQKSRGAKFNDSRS-KIRSLKQI 1400 (2445)
Q Consensus 1351 p~~~~~~i~gc~q~~~l~~----~f~~~~w~~~~~~~~~~~~~~~~-k~~slk~~ 1400 (2445)
|+|.+++|++| ++.++.. .++++.+|.=+.+.+..++.+.- .+.+|+.+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L 54 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYL 54 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEE
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEE
Confidence 55666666666 5555542 34555555555555555555443 45555444
No 95
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=25.11 E-value=33 Score=36.60 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=17.8
Q ss_pred Cccc-CCCCCCCCccccc--cchhhcccc
Q 000067 164 GEFV-QPEKSQPQSQLQS--QSKQIEKGE 189 (2445)
Q Consensus 164 Ge~v-~~e~~~~~~~~~~--~~~eiE~GE 189 (2445)
||+. +||+.+|.|+|+- .++|+|||-
T Consensus 108 geiegkeekkegkgeiegkeekkevengp 136 (138)
T PF05663_consen 108 GEIEGKEEKKEGKGEIEGKEEKKEVENGP 136 (138)
T ss_pred CcccchhhhhccccccccchhhhhhccCC
Confidence 4443 5778888888876 345777763
No 96
>KOG1869 consensus Splicing coactivator SRm160/300, subunit SRm300 [RNA processing and modification]
Probab=25.10 E-value=2.2e+02 Score=36.89 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCccccccc
Q 000067 515 SPLHRSRPNNHREASSKT 532 (2445)
Q Consensus 515 SP~dR~R~~~rre~s~k~ 532 (2445)
.|.+..+...--++++++
T Consensus 380 ~p~r~e~~~~k~e~s~~~ 397 (425)
T KOG1869|consen 380 APIRVEKSAEKVEKSRKS 397 (425)
T ss_pred cccccccccchhccCccc
Confidence 333333333333333333
No 97
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=24.65 E-value=27 Score=45.52 Aligned_cols=130 Identities=13% Similarity=0.013 Sum_probs=84.3
Q ss_pred EEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCCceeEeecCCCCCCCCCceEEEcCcccCCcccc
Q 000067 1895 VVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASR 1974 (2445)
Q Consensus 1895 VFAteDegIpKGEFI~EYvGEVIt~eE~~ERqd~iRrlq~~skd~~~dFY~m~L~r~kgDa~Gyd~lVIDATrkGNiARF 1974 (2445)
..+... +..|+||+.++|+..-.. +.-..+.. +..........||.. ..+..++.++...|+..++
T Consensus 130 ~~~~~~--~~~~~~vw~~vg~~~~~~-c~vc~~~~--~~~~~~~~~~~f~~~---------~~~~~~~~~~~~~g~~~~~ 195 (463)
T KOG1081|consen 130 CRAFKK--REVGDLVWSKVGEYPWWP-CMVCHDPL--LPKGMKHDHVNFFGC---------YAWTHEKRVFPYEGQSSKL 195 (463)
T ss_pred eeeecc--ccceeEEeEEcCcccccc-cceecCcc--cchhhccccceeccc---------hhhHHHhhhhhccchHHHh
Confidence 555555 889999999999985321 00000000 000000001122211 1122245566669999999
Q ss_pred cCCCCCCCeEEEEEEECCEEEEEEEECCCCCCCCe------EEEecCCCCCCcccccCeeEEeCCCCccccccc
Q 000067 1975 ICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEE------ITFDYNSVTESKEEYEASVCLCGSQVCRGSYLN 2042 (2445)
Q Consensus 1975 INHSCdPNCetq~v~VdGe~RIafFAlRDIkaGEE------LTFDYG~~~eskee~~k~kClCGS~nCRGsyLg 2042 (2445)
++|+|.|+-.+..+......|+..++.+-++-+.- ++.+|...... ..+.|.|.+..|.-.++.
T Consensus 196 l~~~~~~~s~~~~~~~~~~~r~~~~~~q~~~~~~~~e~k~~~~~~~~~~~~~----~~~~~~~~~~~~~~k~~~ 265 (463)
T KOG1081|consen 196 IPHSKKPASTMSEKIKEAKARFGKLKAQWEAGIKQKELKPEEYKRIKVVCPI----GDQQIYSAAVSCIKKLLA 265 (463)
T ss_pred hhhccccchhhhhhhhcccchhhhcccchhhccchhhcccccccccccccCc----Ccccccchhhhhhhhccc
Confidence 99999999999999999999999999999998887 77777765542 234588888888776543
No 98
>PF02792 Mago_nashi: Mago nashi protein; InterPro: IPR004023 This family was originally identified in drosophila and called mago nashi, it is a strict maternal effect, grandchildless-like, gene []. The human homologue has been shown to interact with an RNA binding protein, ribonucleoprotein rbm8 (Q9Y5S9 from SWISSPROT) []. An RNAi knockout of the Caenorhabditis elegans homologue causes masculinization of the germ line (Mog phenotype) hermaphrodites, suggesting it is involved in hermaphrodite germ-line sex determination [] but the protein is also found in hermaphrodites and other organisms without a sexual differentiation.; GO: 0005634 nucleus; PDB: 2XB2_Y 2J0S_C 3EX7_A 2J0Q_F 1P27_C 2HYI_A 2X1G_B 1HL6_B 1RK8_B 1OO0_A ....
Probab=23.42 E-value=46 Score=37.59 Aligned_cols=23 Identities=43% Similarity=0.723 Sum_probs=19.2
Q ss_pred HHHHHHHhhhhhhhHHhhcchhhH
Q 000067 1264 AHVFHFLRSDMKSLAFASLTCRHW 1287 (2445)
Q Consensus 1264 ar~fh~lr~d~ksl~~~~~tc~~w 1287 (2445)
.|||+||-.|+|.||| |++.-|+
T Consensus 116 Lr~FyYLvqDLKclvf-sLi~lHF 138 (143)
T PF02792_consen 116 LRVFYYLVQDLKCLVF-SLISLHF 138 (143)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHhee
Confidence 5999999999999999 4555555
No 99
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=22.10 E-value=1.1e+02 Score=40.74 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=15.1
Q ss_pred ccccCCchhHHHHHHHhhcccc
Q 000067 771 FTVIPGKEIETLGEILQTTFER 792 (2445)
Q Consensus 771 ~~~~~g~e~e~~~~~l~~~~~~ 792 (2445)
-.+.--.|.|.|.|.+...+..
T Consensus 411 deLkdd~EyeeIlEdvr~ec~k 432 (500)
T KOG0120|consen 411 DELKDDEEYEEILEDVRTECAK 432 (500)
T ss_pred HHhcchHHHHHHHHHHHHHhcc
Confidence 3444567888888888876543
No 100
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=21.25 E-value=1.3e+02 Score=31.97 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=31.9
Q ss_pred hHHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCC
Q 000067 1505 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 1543 (2445)
Q Consensus 1505 v~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~~ 1543 (2445)
...|+.|+++|+|.+ +..+..|+..|...|..+-..+
T Consensus 49 L~tI~~kl~~~~Y~s--~~ef~~D~~l~~~Na~~yN~~~ 85 (105)
T cd05515 49 MEKIRSKIEGNQYQS--LDDMVSDFVLMFDNACKYNEPD 85 (105)
T ss_pred HHHHHHHHccCCCCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 688999999999966 7889999999999998875444
No 101
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=20.79 E-value=1.3e+02 Score=31.96 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=37.1
Q ss_pred hHHHHhhhccccccccCCcchhhhHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHhhc
Q 000067 1505 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGSAGDMNRITTLFIQLATRLEQ 1564 (2445)
Q Consensus 1505 v~~ie~~~k~gyy~~~g~~~~k~di~~mcrda~~~k~~~~~~~~~~i~~~~~~~~~~~~~ 1564 (2445)
...|+.++++|.|.+ +..+..|+..|+..|..+-..+. .|.+.|..|+
T Consensus 49 l~tI~~kl~~~~Y~s--~~ef~~D~~li~~Na~~yN~~~s----------~i~~~A~~le 96 (103)
T cd05518 49 LKTIEHNIRNDKYAT--EEELMDDFKLMFRNARHYNEEGS----------QVYEDANILE 96 (103)
T ss_pred HHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHCCCCC----------HHHHHHHHHH
Confidence 478999999999976 67889999999999998755443 2345666654
No 102
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=20.54 E-value=1.2e+02 Score=41.90 Aligned_cols=11 Identities=18% Similarity=0.175 Sum_probs=4.4
Q ss_pred ccccCccccCc
Q 000067 196 KCRRGETEKGE 206 (2445)
Q Consensus 196 ~~rr~e~e~gE 206 (2445)
.|.+--|+|-|
T Consensus 116 lwqkn~VfK~e 126 (894)
T KOG0132|consen 116 LWQKNNVFKSE 126 (894)
T ss_pred hhhcccchhHH
Confidence 44444444433
Done!