BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000069
(2442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 259 bits (661), Expect = 2e-68, Method: Composition-based stats.
Identities = 155/388 (39%), Positives = 214/388 (55%), Gaps = 29/388 (7%)
Query: 22 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLT 81
KFNVLLTTYEY++ DR +L I+W ++ +DE HR+KNA L L ++ ++R+L+T
Sbjct: 345 KFNVLLTTYEYILK--DRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLIT 402
Query: 82 GTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIIN 141
GTP F ++ FE+ + + I+
Sbjct: 403 GTPLQNNIKELAALVNFLMPGRFTIDQEID------FENQDEEQEE-----------YIH 445
Query: 142 RLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSI-GNSKGR 199
LH+ ++PF+LRRLK VE LP K ER++R E S Q K + +N ++ +KG
Sbjct: 446 DLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGG 505
Query: 200 --SVHNSVMELRNICNHPYLSQLHAEEV------DTLIPKHYLPPIVRLCGKLEMLDRLL 251
S+ N + EL+ NHPYL E V + ++ L ++ GK+ +LD+LL
Sbjct: 506 HFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLL 565
Query: 252 PKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 311
+LK HRVL FS M R+LD++ DYL+ K + RLDG R ID FN DS
Sbjct: 566 TRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSND 625
Query: 312 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 371
F+FLLS RAGG+G+NL ADTV+IFD+DWNPQ DLQA ARAHRIGQK V+V R + T
Sbjct: 626 FVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685
Query: 372 VEEQVRASAEHKLGVANQSITAGFFDNN 399
VEE+V A K+ + I+ G D N
Sbjct: 686 VEEEVLERARKKMILEYAIISLGVTDGN 713
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
EUKARYOTIC Rad54
Length = 644
Score = 151 bits (382), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/348 (30%), Positives = 166/348 (47%), Gaps = 16/348 (4%)
Query: 50 IIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSED 109
+I DEGHR+KN+ + L + R+L++GTP I ++++
Sbjct: 196 VICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQE 255
Query: 110 FSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKHKVENELPEKIER 169
F + F P D D + L ++ ++RR + LP KIE+
Sbjct: 256 FKKRFEIPILKGRD--ADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQ 313
Query: 170 LVRCEASAYQKLLMKRVEEN---LGSIGNSKGRSVHNSVMEL-RNICNHP---YLSQLHA 222
+V C + QK L K + + S+ K S + + +CNHP Y L
Sbjct: 314 VVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTG 373
Query: 223 EE----VDTLIPKHYLPPIV--RLCGKLEMLDRLLPKLKAT-DHRVLFFSTMTRLLDVME 275
EE L P++Y V +L GK+ +LD +L + T +V+ S T+ LD+ E
Sbjct: 374 EEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFE 433
Query: 276 DYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 335
++Y Y+RLDG S R ++++FN SP FIF+LS +AGG G+NL A+ +++
Sbjct: 434 KLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM 493
Query: 336 FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 383
FD DWNP D QA AR R GQK+ + R + T+EE++ HK
Sbjct: 494 FDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK 541
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
Length = 500
Score = 148 bits (374), Expect = 3e-35, Method: Composition-based stats.
Identities = 122/415 (29%), Positives = 197/415 (47%), Gaps = 48/415 (11%)
Query: 9 AVLLYSREKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNAD 68
AV R KI + ++++LTTY L+ +L +++W YI+IDE IKN K+
Sbjct: 115 AVFHEDRSKIKLEDYDIILTTYAVLLRD---TRLKEVEWKYIVIDEAQNIKNPQTKIFKA 171
Query: 69 LKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDX 128
+K +S +R+ LTGTP + S +F F P + GDN
Sbjct: 172 VKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIK-KGDNMAK- 229
Query: 129 XXXXXXXXXXIINRLHQVLRPFVLRRLKHK--VENELPEKIERLVRCEASAYQKLLMKRV 186
L ++ PF+LRR K+ + N+LP+KIE V C + Q + K
Sbjct: 230 ------------EELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAE 277
Query: 187 EENL-----GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLC 241
ENL G + + +++++L+ I +HP L + + V R
Sbjct: 278 VENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSV-------------RRS 324
Query: 242 GKL-EMLDRLLPKLKATDHRVLF--FSTMTRLL-DVMEDYL-TFKQYRYLRLDGHTSGGD 296
GK+ ++ + L D +F F M +++ +++E L T + Y G S +
Sbjct: 325 GKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLY----GELSKKE 380
Query: 297 RGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIG 356
R +I KF S FI +LS++AGG G+NL +A+ VI FD WNP V+ QA R +RIG
Sbjct: 381 RDDIISKFQNNPSVKFI-VLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIG 439
Query: 357 QKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLE 410
Q R+V+V + +V T+EE++ K + I++G + S E+ R+ +E
Sbjct: 440 QTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIE 494
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
Length = 500
Score = 144 bits (363), Expect = 6e-34, Method: Composition-based stats.
Identities = 116/411 (28%), Positives = 189/411 (45%), Gaps = 40/411 (9%)
Query: 9 AVLLYSREKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNAD 68
AV R KI + ++++LTTY L+ +L +++W YI+IDE IKN K+
Sbjct: 115 AVFHEDRSKIKLEDYDIILTTYAVLLRD---TRLKEVEWKYIVIDEAQNIKNPQTKIFKA 171
Query: 69 LKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDX 128
+K +S +R+ LTGTP + S +F F P + GDN
Sbjct: 172 VKELKSKYRIALTGTPIENKVDDLWSIXTFLNPGLLGSYSEFKSKFATPIK-KGDNXAK- 229
Query: 129 XXXXXXXXXXIINRLHQVLRPFVLRRLKHK--VENELPEKIERLVRCEASAYQKLLMKRV 186
L ++ PF+LRR K+ + N+LP+KIE V C + Q K
Sbjct: 230 ------------EELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAXYKAE 277
Query: 187 EENL-----GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLC 241
ENL G + + +++++L+ I +HP L + + VR
Sbjct: 278 VENLFNNIDSVTGIKRKGXILSTLLKLKQIVDHPALLKGGEQS-------------VRRS 324
Query: 242 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSGGDRGAL 300
GK ++ + ++ F+ ++ + + + L G S +R +
Sbjct: 325 GKXIRTXEIIEEALDEGDKIAIFTQFVDXGKIIRNIIEKELNTEVPFLYGELSKKERDDI 384
Query: 301 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 360
I KF S FI +LS++AGG G+NL +A+ VI FD WNP V+ QA R +RIGQ R+
Sbjct: 385 ISKFQNNPSVKFI-VLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRN 443
Query: 361 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLE 410
V+V + +V T+EE++ K + I++G + S E+ R+ +E
Sbjct: 444 VIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIE 494
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
Length = 271
Score = 87.0 bits (214), Expect = 1e-16, Method: Composition-based stats.
Identities = 78/261 (29%), Positives = 130/261 (49%), Gaps = 29/261 (11%)
Query: 161 NELPEKIERLVRCEASAYQKLLMKRVEENL-----GSIGNSKGRSVHNSVMELRNICNHP 215
++LP+KIE V C + Q + K ENL G + + +++++L+ I +HP
Sbjct: 23 SDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHP 82
Query: 216 YLSQLHAEEVDTLIPKHYLPPIVRLCGKL-EMLDRLLPKLKATDHRVLF--FSTMTRLL- 271
L + + V R GK+ ++ + L D +F F M +++
Sbjct: 83 ALLKGGEQSV-------------RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIR 129
Query: 272 DVMEDYL-TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAA 330
+++E L T + Y G S +R +I KF S FI +LS++AGG G+NL +A
Sbjct: 130 NIIEKELNTEVPFLY----GELSKKERDDIISKFQNNPSVKFI-VLSVKAGGFGINLTSA 184
Query: 331 DTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQS 390
+ VI FD WNP V+ QA R +RIGQ R+V+V + +V T+EE++ K +
Sbjct: 185 NRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDI 244
Query: 391 ITAG-FFDNNTSAEDRREYLE 410
I++G + S E+ R+ +E
Sbjct: 245 ISSGDSWITELSTEELRKVIE 265
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 32.7 bits (73), Expect = 2.7, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
Query: 250 LLPKLKAT--DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 307
LL L AT D L F + D +ED+L + Y + G S DR + +F
Sbjct: 36 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95
Query: 308 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIG 356
SP L++ G+++ VI FD + + + R R+G
Sbjct: 96 KSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 141
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%)
Query: 315 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 363
LL G G N Q A + FD +NP + Q R RIGQ D+ +
Sbjct: 560 LLCSEIGSEGRNFQFASHXVXFDLPFNPDLLEQRIGRLDRIGQAHDIQI 608
>pdb|3LGJ|A Chain A, Crystal Structure Of Single-Stranded Binding Protein
(Ssb) From Bartonella Henselae
pdb|3LGJ|B Chain B, Crystal Structure Of Single-Stranded Binding Protein
(Ssb) From Bartonella Henselae
Length = 169
Score = 31.6 bits (70), Expect = 6.2, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 24 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 72
N + T+E MNK+ K+ K +WH +++ H K A L+ K Y
Sbjct: 49 NFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVY 97
>pdb|2JCV|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCV|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JD1|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese And Nadph
pdb|2JD1|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese And Nadph
pdb|2JD2|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese
pdb|2JD2|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese
pdb|3RAS|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With A Lipophilic
Phosphonate Inhibitor
pdb|3RAS|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With A Lipophilic
Phosphonate Inhibitor
pdb|2Y1C|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1C|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1D|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue And Manganese.
pdb|2Y1D|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue And Manganese.
pdb|2Y1E|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1E|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1F|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue, Manganese And Nadph.
pdb|2Y1F|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue, Manganese And Nadph.
pdb|2Y1G|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fr900098 Analogue And Manganese.
pdb|2Y1G|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fr900098 Analogue And Manganese.
pdb|4A03|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Dxr In
Complex With The Antibiotic Fr900098 And Cofactor Nadph
pdb|4A03|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Dxr In
Complex With The Antibiotic Fr900098 And Cofactor Nadph
pdb|4AIC|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin, Manganese And
Nadph
pdb|4AIC|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin, Manganese And
Nadph
Length = 398
Score = 30.8 bits (68), Expect = 9.0, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 42/98 (42%)
Query: 2258 PDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLD 2317
P + ++++ G + Q P D+ LP+S + ++ G + S PLD
Sbjct: 252 PQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAACDFHTASSWEFEPLD 311
Query: 2318 ESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAA 2355
P E++ Q + GG + ++ + A+FLA
Sbjct: 312 TDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAG 349
>pdb|2JCX|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCX|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCY|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2JCY|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2JD0|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Nadph
pdb|2JD0|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Nadph
Length = 398
Score = 30.8 bits (68), Expect = 9.3, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 42/98 (42%)
Query: 2258 PDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLD 2317
P + ++++ G + Q P D+ LP+S + ++ G + S PLD
Sbjct: 252 PQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAACDFHTASSWEFEPLD 311
Query: 2318 ESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAA 2355
P E++ Q + GG + ++ + A+FLA
Sbjct: 312 TDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAG 349
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.307 0.127 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,752,364
Number of Sequences: 62578
Number of extensions: 2762692
Number of successful extensions: 4956
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 4925
Number of HSP's gapped (non-prelim): 31
length of query: 2442
length of database: 14,973,337
effective HSP length: 115
effective length of query: 2327
effective length of database: 7,776,867
effective search space: 18096769509
effective search space used: 18096769509
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)