Query 000069
Match_columns 2442
No_of_seqs 391 out of 2513
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 16:29:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0386 Chromatin remodeling c 100.0 1.8E-92 3.9E-97 870.8 30.8 501 17-557 488-995 (1157)
2 KOG0385 Chromatin remodeling c 100.0 6.9E-78 1.5E-82 728.1 33.3 399 19-439 264-670 (971)
3 KOG0384 Chromodomain-helicase 100.0 6.7E-76 1.5E-80 734.1 29.5 398 22-439 475-888 (1373)
4 KOG0391 SNF2 family DNA-depend 100.0 3.8E-68 8.2E-73 652.4 42.6 368 22-399 715-1416(1958)
5 PLN03142 Probable chromatin-re 100.0 9.6E-65 2.1E-69 650.2 39.2 400 20-443 267-673 (1033)
6 KOG0387 Transcription-coupled 100.0 1.3E-62 2.9E-67 598.7 32.3 369 22-398 315-686 (923)
7 KOG0389 SNF2 family DNA-depend 100.0 7.5E-62 1.6E-66 591.3 32.4 368 21-395 498-913 (941)
8 KOG0388 SNF2 family DNA-depend 100.0 4.2E-62 9.1E-67 583.3 21.0 361 21-398 672-1182(1185)
9 KOG0392 SNF2 family DNA-depend 100.0 1.6E-59 3.4E-64 584.6 30.9 368 22-394 1078-1478(1549)
10 KOG0390 DNA repair protein, SN 100.0 6.9E-52 1.5E-56 515.6 32.3 367 23-396 355-733 (776)
11 KOG1015 Transcription regulato 100.0 1.1E-50 2.3E-55 494.4 29.1 426 18-445 780-1355(1567)
12 COG0553 HepA Superfamily II DN 100.0 3.5E-48 7.6E-53 486.2 27.1 364 23-393 448-845 (866)
13 KOG4439 RNA polymerase II tran 100.0 2.2E-46 4.7E-51 452.4 26.1 355 21-393 430-881 (901)
14 KOG1002 Nucleotide excision re 100.0 1.4E-44 3.1E-49 423.9 22.9 364 21-394 276-773 (791)
15 KOG1016 Predicted DNA helicase 100.0 4.6E-42 1E-46 413.4 23.3 363 41-408 429-887 (1387)
16 PRK04914 ATP-dependent helicas 100.0 6.1E-41 1.3E-45 430.2 30.4 342 22-394 247-629 (956)
17 KOG1000 Chromatin remodeling p 100.0 1.1E-36 2.5E-41 359.2 24.7 330 24-391 288-624 (689)
18 KOG1001 Helicase-like transcri 100.0 4.5E-37 9.7E-42 384.0 15.1 355 20-392 232-672 (674)
19 KOG0383 Predicted helicase [Ge 100.0 2.9E-36 6.4E-41 374.1 9.0 289 14-324 406-696 (696)
20 PRK13766 Hef nuclease; Provisi 99.9 2.9E-26 6.4E-31 291.3 24.1 349 18-387 103-496 (773)
21 TIGR00603 rad25 DNA repair hel 99.9 3.9E-24 8.6E-29 269.8 26.8 259 22-379 343-616 (732)
22 PF00176 SNF2_N: SNF2 family N 99.9 3.9E-24 8.6E-29 238.3 14.6 185 19-217 104-298 (299)
23 COG1111 MPH1 ERCC4-like helica 99.9 5.6E-22 1.2E-26 238.4 23.0 147 240-392 346-503 (542)
24 KOG0298 DEAD box-containing he 99.8 2.4E-20 5.1E-25 238.4 11.5 120 259-385 1222-1341(1394)
25 COG1061 SSL2 DNA or RNA helica 99.8 2E-17 4.3E-22 201.1 22.1 277 23-381 123-405 (442)
26 PRK11192 ATP-dependent RNA hel 99.8 9.1E-18 2E-22 201.2 18.3 117 243-364 232-348 (434)
27 PTZ00110 helicase; Provisional 99.8 1.2E-17 2.5E-22 207.5 19.7 123 243-370 362-484 (545)
28 PHA02558 uvsW UvsW helicase; P 99.8 7.7E-17 1.7E-21 198.2 25.5 126 243-370 329-455 (501)
29 KOG0354 DEAD-box like helicase 99.7 2.4E-16 5.3E-21 198.1 26.1 352 17-392 149-550 (746)
30 PLN00206 DEAD-box ATP-dependen 99.7 6.8E-17 1.5E-21 199.4 20.4 133 243-382 352-485 (518)
31 PRK11776 ATP-dependent RNA hel 99.7 6.7E-17 1.4E-21 195.6 20.0 121 243-370 229-349 (460)
32 TIGR00614 recQ_fam ATP-depende 99.7 6.5E-17 1.4E-21 197.1 19.8 106 257-365 225-330 (470)
33 PRK01297 ATP-dependent RNA hel 99.7 9.4E-17 2E-21 195.4 19.6 120 243-369 322-441 (475)
34 PRK04837 ATP-dependent RNA hel 99.7 8.2E-17 1.8E-21 192.9 18.5 120 243-369 242-361 (423)
35 PRK10590 ATP-dependent RNA hel 99.7 8.3E-17 1.8E-21 195.3 18.5 116 243-363 232-347 (456)
36 PRK04537 ATP-dependent RNA hel 99.7 9.4E-17 2E-21 200.6 18.7 116 243-363 244-359 (572)
37 TIGR01389 recQ ATP-dependent D 99.7 1.7E-16 3.6E-21 198.2 18.5 114 245-363 213-326 (591)
38 PTZ00424 helicase 45; Provisio 99.7 6.9E-16 1.5E-20 181.9 21.1 121 243-370 254-374 (401)
39 PRK11057 ATP-dependent DNA hel 99.7 3.7E-16 8E-21 196.3 18.9 104 257-363 235-338 (607)
40 KOG0331 ATP-dependent RNA heli 99.7 1.8E-15 3.8E-20 185.9 20.4 118 242-362 324-442 (519)
41 cd00079 HELICc Helicase superf 99.7 5E-16 1.1E-20 153.4 12.4 120 242-364 12-131 (131)
42 PRK11634 ATP-dependent RNA hel 99.7 1.1E-14 2.4E-19 184.1 26.4 117 243-364 232-348 (629)
43 COG0513 SrmB Superfamily II DN 99.6 1.2E-14 2.7E-19 179.8 22.2 134 242-383 259-392 (513)
44 PLN03137 ATP-dependent DNA hel 99.6 7.3E-15 1.6E-19 191.4 16.4 105 258-365 680-784 (1195)
45 KOG0330 ATP-dependent RNA heli 99.6 4.8E-14 1E-18 166.6 17.5 128 243-379 287-414 (476)
46 PRK13767 ATP-dependent helicas 99.6 2.8E-13 6E-18 176.8 25.2 108 255-365 281-395 (876)
47 KOG1123 RNA polymerase II tran 99.5 7.7E-14 1.7E-18 167.5 17.4 295 21-416 389-708 (776)
48 TIGR01587 cas3_core CRISPR-ass 99.5 1.2E-13 2.7E-18 161.3 18.9 134 243-383 208-354 (358)
49 TIGR03817 DECH_helic helicase/ 99.5 3.3E-13 7.2E-18 173.5 20.2 127 243-378 260-394 (742)
50 TIGR00580 mfd transcription-re 99.5 5.6E-13 1.2E-17 174.3 19.2 108 257-369 659-769 (926)
51 TIGR00643 recG ATP-dependent D 99.5 8.4E-13 1.8E-17 167.1 20.2 106 256-364 446-562 (630)
52 KOG0328 Predicted ATP-dependen 99.5 4.6E-13 1E-17 153.6 15.7 232 17-373 140-376 (400)
53 PRK10689 transcription-repair 99.5 9E-13 2E-17 175.4 18.9 102 258-362 809-913 (1147)
54 PRK10917 ATP-dependent DNA hel 99.4 2.4E-12 5.2E-17 164.3 21.3 106 255-363 468-584 (681)
55 PF00271 Helicase_C: Helicase 99.4 1.1E-13 2.3E-18 129.6 6.2 78 276-356 1-78 (78)
56 KOG0333 U5 snRNP-like RNA heli 99.4 2.8E-12 6.1E-17 155.6 18.1 120 239-363 500-619 (673)
57 KOG0338 ATP-dependent RNA heli 99.4 9.6E-12 2.1E-16 150.6 22.5 125 246-379 416-540 (691)
58 PRK09751 putative ATP-dependen 99.4 7E-12 1.5E-16 168.9 23.2 96 257-355 243-371 (1490)
59 COG0514 RecQ Superfamily II DN 99.4 1.8E-12 3.9E-17 162.0 15.0 227 16-365 101-334 (590)
60 KOG0343 RNA Helicase [RNA proc 99.4 4.9E-12 1.1E-16 154.0 17.0 135 242-384 299-435 (758)
61 PRK11448 hsdR type I restricti 99.3 2.5E-11 5.5E-16 161.6 21.6 106 258-367 698-815 (1123)
62 smart00490 HELICc helicase sup 99.3 1.9E-12 4.1E-17 118.6 7.5 81 273-356 2-82 (82)
63 PRK02362 ski2-like helicase; P 99.3 4.9E-11 1.1E-15 153.5 20.9 110 257-369 242-396 (737)
64 KOG0340 ATP-dependent RNA heli 99.3 1.9E-11 4.1E-16 144.0 15.4 122 240-364 235-358 (442)
65 KOG0342 ATP-dependent RNA heli 99.3 2.2E-11 4.8E-16 147.6 16.4 114 243-360 316-429 (543)
66 PRK00254 ski2-like helicase; P 99.3 9.2E-11 2E-15 150.6 20.1 84 284-370 297-388 (720)
67 COG1201 Lhr Lhr-like helicases 99.3 9.1E-11 2E-15 151.1 19.2 127 251-384 246-374 (814)
68 KOG0341 DEAD-box protein abstr 99.3 7.6E-12 1.7E-16 147.5 8.5 123 241-371 407-529 (610)
69 KOG0346 RNA helicase [RNA proc 99.3 4.6E-11 1E-15 143.2 15.0 118 243-364 254-406 (569)
70 KOG0339 ATP-dependent RNA heli 99.3 4.5E-11 9.7E-16 144.7 14.8 125 242-372 453-577 (731)
71 TIGR02621 cas3_GSU0051 CRISPR- 99.3 1.4E-10 3E-15 150.1 20.1 106 256-366 270-390 (844)
72 KOG0335 ATP-dependent RNA heli 99.3 5.1E-11 1.1E-15 145.7 15.3 120 243-365 315-441 (482)
73 PRK12898 secA preprotein trans 99.3 1.2E-09 2.7E-14 138.9 28.1 130 240-379 455-592 (656)
74 PRK01172 ski2-like helicase; P 99.2 1.4E-10 2.9E-15 147.9 19.4 102 255-360 233-368 (674)
75 KOG0350 DEAD-box ATP-dependent 99.2 4.2E-11 9.2E-16 145.1 13.7 132 243-383 416-551 (620)
76 PRK09200 preprotein translocas 99.2 8.6E-10 1.9E-14 142.6 23.4 130 240-379 410-547 (790)
77 KOG0332 ATP-dependent RNA heli 99.2 6.4E-11 1.4E-15 140.2 11.6 120 243-369 317-442 (477)
78 KOG4284 DEAD box protein [Tran 99.2 1.3E-10 2.9E-15 143.2 14.5 119 243-367 259-377 (980)
79 KOG0326 ATP-dependent RNA heli 99.2 3.2E-11 7E-16 140.4 8.3 121 242-369 308-428 (459)
80 TIGR03714 secA2 accessory Sec 99.2 1.3E-09 2.7E-14 140.3 23.1 118 240-363 406-532 (762)
81 KOG0347 RNA helicase [RNA proc 99.2 3.9E-10 8.4E-15 137.9 16.6 98 257-357 462-559 (731)
82 TIGR01970 DEAH_box_HrpB ATP-de 99.2 6.5E-10 1.4E-14 144.8 19.1 108 258-371 209-337 (819)
83 KOG0345 ATP-dependent RNA heli 99.1 5.8E-10 1.3E-14 135.0 16.3 121 240-365 239-361 (567)
84 TIGR00963 secA preprotein tran 99.1 6.6E-10 1.4E-14 142.3 17.6 119 241-364 388-513 (745)
85 KOG0348 ATP-dependent RNA heli 99.1 6.9E-10 1.5E-14 135.5 16.0 116 246-364 411-550 (708)
86 PHA02653 RNA helicase NPH-II; 99.1 2.9E-09 6.2E-14 136.5 22.0 108 257-372 394-516 (675)
87 KOG0336 ATP-dependent RNA heli 99.1 5.9E-10 1.3E-14 132.7 14.0 115 242-360 450-564 (629)
88 PRK11664 ATP-dependent RNA hel 99.1 2E-09 4.3E-14 140.4 18.4 110 257-372 211-341 (812)
89 TIGR03158 cas3_cyano CRISPR-as 99.0 3.2E-09 7E-14 126.8 16.6 85 257-353 271-357 (357)
90 PRK05298 excinuclease ABC subu 99.0 1.9E-08 4.1E-13 128.9 23.6 124 240-369 428-556 (652)
91 TIGR00631 uvrb excinuclease AB 99.0 6.2E-09 1.3E-13 133.3 18.9 134 240-379 424-564 (655)
92 TIGR00596 rad1 DNA repair prot 99.0 5.4E-09 1.2E-13 136.0 16.4 80 19-99 4-89 (814)
93 COG1200 RecG RecG-like helicas 99.0 1.1E-08 2.4E-13 129.2 18.5 78 282-362 507-585 (677)
94 KOG0327 Translation initiation 99.0 4E-09 8.7E-14 126.0 13.4 119 243-370 252-370 (397)
95 TIGR00348 hsdR type I site-spe 98.9 3.4E-08 7.3E-13 126.9 21.4 108 258-368 514-649 (667)
96 COG4096 HsdR Type I site-speci 98.9 1.7E-09 3.7E-14 137.7 8.5 107 259-368 427-546 (875)
97 PF11496 HDA2-3: Class II hist 98.9 9.3E-09 2E-13 121.3 13.9 209 168-379 5-254 (297)
98 PRK11131 ATP-dependent RNA hel 98.9 2.4E-08 5.1E-13 134.1 19.1 109 257-373 285-414 (1294)
99 TIGR00595 priA primosomal prot 98.9 2.7E-08 5.9E-13 124.3 18.5 97 271-370 271-383 (505)
100 COG1205 Distinct helicase fami 98.9 1.4E-08 3.1E-13 133.0 16.7 132 243-379 291-431 (851)
101 PRK09401 reverse gyrase; Revie 98.9 2.1E-08 4.5E-13 135.0 16.7 102 243-355 316-431 (1176)
102 KOG0351 ATP-dependent DNA heli 98.9 1.6E-08 3.4E-13 133.0 14.8 109 256-367 483-591 (941)
103 TIGR01967 DEAH_box_HrpA ATP-de 98.8 7.1E-08 1.5E-12 129.9 16.3 109 257-373 278-407 (1283)
104 PRK09694 helicase Cas3; Provis 98.8 8.1E-08 1.7E-12 126.3 16.0 101 255-358 557-665 (878)
105 PRK13104 secA preprotein trans 98.7 1.2E-06 2.6E-11 114.6 22.6 130 240-379 426-593 (896)
106 COG1197 Mfd Transcription-repa 98.6 8.4E-07 1.8E-11 117.4 20.2 108 257-369 802-912 (1139)
107 KOG0344 ATP-dependent RNA heli 98.6 1.1E-07 2.5E-12 118.1 11.4 115 241-360 372-487 (593)
108 PRK12904 preprotein translocas 98.6 2.2E-06 4.8E-11 111.9 22.7 130 240-379 412-579 (830)
109 PRK13107 preprotein translocas 98.6 2.3E-06 5E-11 112.0 22.1 120 240-364 431-587 (908)
110 TIGR01054 rgy reverse gyrase. 98.6 2.4E-07 5.2E-12 125.1 13.7 85 246-340 317-409 (1171)
111 KOG0337 ATP-dependent RNA heli 98.6 1.5E-07 3.3E-12 113.6 10.4 124 241-370 245-368 (529)
112 COG1202 Superfamily II helicas 98.6 6.5E-07 1.4E-11 111.0 15.5 107 259-369 441-552 (830)
113 COG4889 Predicted helicase [Ge 98.6 4.5E-08 9.9E-13 123.9 5.6 86 282-367 499-585 (1518)
114 PRK05580 primosome assembly pr 98.6 2.7E-07 5.9E-12 119.0 12.7 104 264-370 432-551 (679)
115 PRK12906 secA preprotein trans 98.5 1.4E-06 2.9E-11 113.5 17.9 120 240-364 422-549 (796)
116 COG1204 Superfamily II helicas 98.5 9.7E-07 2.1E-11 115.2 16.2 109 246-358 241-396 (766)
117 PRK14701 reverse gyrase; Provi 98.5 2E-07 4.3E-12 128.6 9.3 105 245-360 320-448 (1638)
118 COG4098 comFA Superfamily II D 98.5 4.5E-06 9.8E-11 99.6 18.3 123 246-373 293-419 (441)
119 PF14619 SnAC: Snf2-ATP coupli 98.5 5.9E-08 1.3E-12 94.3 2.4 61 474-546 14-74 (74)
120 PRK12900 secA preprotein trans 98.5 6.8E-07 1.5E-11 117.3 11.8 129 241-379 581-717 (1025)
121 KOG0352 ATP-dependent DNA heli 98.4 1.6E-06 3.4E-11 105.0 12.4 104 260-366 257-360 (641)
122 KOG0334 RNA helicase [RNA proc 98.3 1.8E-06 3.9E-11 112.9 11.1 123 241-369 597-719 (997)
123 TIGR01407 dinG_rel DnaQ family 98.3 7.5E-06 1.6E-10 108.2 16.4 90 246-341 661-757 (850)
124 COG1203 CRISPR-associated heli 98.2 2.1E-05 4.6E-10 102.7 16.5 137 251-390 433-572 (733)
125 KOG0349 Putative DEAD-box RNA 98.1 3.9E-06 8.4E-11 101.5 7.8 96 258-356 505-603 (725)
126 KOG0952 DNA/RNA helicase MER3/ 98.1 2.6E-05 5.6E-10 102.2 15.3 71 286-359 400-480 (1230)
127 KOG1513 Nuclear helicase MOP-3 98.0 4.4E-05 9.6E-10 97.3 14.0 89 302-393 851-947 (1300)
128 cd00046 DEXDc DEAD-like helica 98.0 8.1E-06 1.8E-10 79.8 6.1 66 19-84 76-144 (144)
129 PF13871 Helicase_C_4: Helicas 98.0 2.5E-05 5.3E-10 92.3 9.5 93 299-394 52-152 (278)
130 COG0556 UvrB Helicase subunit 97.9 0.0004 8.6E-09 87.1 19.8 133 243-379 431-568 (663)
131 PRK08074 bifunctional ATP-depe 97.9 0.00031 6.7E-09 94.3 18.3 96 245-343 738-839 (928)
132 KOG0947 Cytoplasmic exosomal R 97.8 0.0012 2.7E-08 86.6 21.9 80 286-369 634-722 (1248)
133 PRK07246 bifunctional ATP-depe 97.8 0.00032 6.9E-09 93.1 16.3 91 245-341 634-726 (820)
134 PRK11747 dinG ATP-dependent DN 97.7 0.00079 1.7E-08 88.1 18.8 91 244-341 520-617 (697)
135 TIGR00604 rad3 DNA repair heli 97.7 0.00036 7.8E-09 91.1 13.8 96 246-342 509-618 (705)
136 smart00487 DEXDc DEAD-like hel 97.6 5.2E-05 1.1E-09 78.7 5.0 72 18-89 101-175 (201)
137 KOG0353 ATP-dependent DNA heli 97.6 0.00048 1E-08 83.0 12.0 107 258-367 317-466 (695)
138 PF04851 ResIII: Type III rest 97.6 6.2E-05 1.3E-09 79.1 4.2 67 17-85 106-183 (184)
139 PRK13103 secA preprotein trans 97.4 0.028 6E-07 75.4 26.1 120 240-364 431-587 (913)
140 KOG0951 RNA helicase BRR2, DEA 97.3 0.00076 1.6E-08 90.1 10.9 72 282-357 607-689 (1674)
141 KOG0949 Predicted helicase, DE 97.3 0.0064 1.4E-07 80.4 18.4 68 288-358 968-1036(1330)
142 KOG0953 Mitochondrial RNA heli 97.3 0.00075 1.6E-08 84.9 9.8 101 256-360 356-466 (700)
143 KOG0329 ATP-dependent RNA heli 97.2 0.00055 1.2E-08 79.8 7.2 46 315-360 302-347 (387)
144 COG0610 Type I site-specific r 97.1 0.003 6.4E-08 85.5 13.0 71 295-367 578-650 (962)
145 PF00270 DEAD: DEAD/DEAH box h 97.0 0.00032 7E-09 73.5 2.6 74 17-91 90-168 (169)
146 COG1643 HrpA HrpA-like helicas 97.0 0.01 2.3E-07 79.2 15.6 110 258-373 259-390 (845)
147 PRK12903 secA preprotein trans 96.9 0.0045 9.8E-08 82.0 11.1 130 240-379 408-545 (925)
148 KOG0948 Nuclear exosomal RNA h 96.8 0.0037 8E-08 80.8 9.3 73 288-364 452-533 (1041)
149 PRK12326 preprotein translocas 96.7 0.0072 1.6E-07 79.2 11.3 131 240-380 409-554 (764)
150 KOG0920 ATP-dependent RNA heli 96.6 0.04 8.6E-07 74.2 17.2 126 243-374 396-548 (924)
151 COG4581 Superfamily II RNA hel 96.5 0.018 3.8E-07 78.1 12.8 76 287-366 449-533 (1041)
152 PRK12899 secA preprotein trans 96.3 0.029 6.3E-07 75.4 13.3 130 240-379 550-687 (970)
153 PF13872 AAA_34: P-loop contai 96.3 0.0056 1.2E-07 73.6 6.2 144 20-185 134-302 (303)
154 TIGR02562 cas3_yersinia CRISPR 96.3 0.12 2.5E-06 70.5 18.3 47 310-359 837-883 (1110)
155 PF13307 Helicase_C_2: Helicas 96.2 0.011 2.4E-07 64.9 7.2 82 255-341 6-93 (167)
156 cd00268 DEADc DEAD-box helicas 96.1 0.0084 1.8E-07 65.6 5.8 69 17-85 114-185 (203)
157 COG1198 PriA Primosomal protei 95.9 0.043 9.4E-07 72.6 12.1 87 282-371 506-606 (730)
158 KOG0922 DEAH-box RNA helicase 95.8 0.33 7.1E-06 63.5 18.3 113 259-374 259-394 (674)
159 COG1110 Reverse gyrase [DNA re 95.4 0.3 6.5E-06 66.2 16.6 86 244-339 324-416 (1187)
160 PRK12901 secA preprotein trans 95.3 0.045 9.7E-07 74.1 8.6 120 240-364 610-737 (1112)
161 KOG0924 mRNA splicing factor A 95.2 0.072 1.6E-06 69.0 9.9 90 282-377 597-704 (1042)
162 COG1199 DinG Rad3-related DNA 94.9 0.18 4E-06 65.6 12.4 82 255-341 476-560 (654)
163 PF07652 Flavi_DEAD: Flaviviru 94.4 0.037 8.1E-07 61.2 4.0 63 20-84 70-136 (148)
164 KOG4150 Predicted ATP-dependen 94.4 0.084 1.8E-06 67.2 7.3 115 240-357 507-629 (1034)
165 COG0553 HepA Superfamily II DN 94.2 0.013 2.8E-07 76.6 0.0 92 244-358 433-524 (866)
166 KOG0950 DNA polymerase theta/e 93.1 0.45 9.7E-06 64.2 10.9 72 283-357 523-598 (1008)
167 CHL00122 secA preprotein trans 93.0 3.3 7.1E-05 56.6 18.5 84 240-327 406-490 (870)
168 COG0653 SecA Preprotein transl 92.9 2.9 6.3E-05 56.7 17.9 130 240-379 411-551 (822)
169 PHA03247 large tegument protei 92.8 32 0.00069 51.8 27.8 286 566-859 2605-2926(3151)
170 PF06733 DEAD_2: DEAD_2; Inte 92.5 0.06 1.3E-06 59.1 1.7 44 17-60 114-159 (174)
171 KOG0923 mRNA splicing factor A 92.4 1.6 3.5E-05 57.5 14.0 78 283-368 507-604 (902)
172 KOG0926 DEAH-box RNA helicase 91.5 0.34 7.3E-06 64.2 6.7 79 284-368 606-702 (1172)
173 PHA03247 large tegument protei 90.4 57 0.0012 49.5 26.2 272 568-859 2709-2984(3151)
174 smart00491 HELICc2 helicase su 90.3 1.2 2.7E-05 48.6 8.9 54 286-340 23-80 (142)
175 smart00488 DEXDc2 DEAD-like he 89.9 0.19 4.2E-06 60.1 2.6 43 17-59 206-249 (289)
176 smart00489 DEXDc3 DEAD-like he 89.9 0.19 4.2E-06 60.1 2.6 43 17-59 206-249 (289)
177 smart00492 HELICc3 helicase su 89.8 1.9 4.1E-05 47.3 9.7 48 292-341 31-80 (141)
178 PF06862 DUF1253: Protein of u 87.8 4.4 9.5E-05 52.0 12.3 115 240-356 279-397 (442)
179 PRK12902 secA preprotein trans 87.1 6.7 0.00014 54.0 13.9 84 240-327 421-505 (939)
180 KOG1133 Helicase of the DEAD s 86.0 15 0.00034 49.3 15.8 82 259-341 630-721 (821)
181 KOG0442 Structure-specific end 84.9 4.8 0.0001 54.5 10.8 58 330-393 545-606 (892)
182 PF02399 Herpes_ori_bp: Origin 84.6 3.1 6.8E-05 56.3 9.1 112 243-365 268-385 (824)
183 TIGR03117 cas_csf4 CRISPR-asso 80.5 7.5 0.00016 52.0 10.3 95 254-355 466-573 (636)
184 KOG1132 Helicase of the DEAD s 77.5 1.6 3.4E-05 59.0 3.0 42 17-59 217-260 (945)
185 TIGR03117 cas_csf4 CRISPR-asso 76.7 2.2 4.8E-05 56.7 3.9 39 20-60 180-220 (636)
186 TIGR00595 priA primosomal prot 75.9 18 0.00039 47.2 11.5 96 239-338 6-102 (505)
187 PRK05580 primosome assembly pr 75.3 19 0.00041 48.6 11.8 96 240-339 172-268 (679)
188 PRK07764 DNA polymerase III su 72.9 9.2 0.0002 52.5 8.2 38 45-82 119-157 (824)
189 COG1200 RecG RecG-like helicas 70.6 1.1E+02 0.0023 41.9 16.5 91 241-335 294-390 (677)
190 PF13086 AAA_11: AAA domain; P 69.0 7.3 0.00016 42.9 5.1 61 18-87 166-229 (236)
191 PF13401 AAA_22: AAA domain; P 66.7 4.2 9.1E-05 41.7 2.5 38 45-84 86-125 (131)
192 PRK15483 type III restriction- 65.5 8.5 0.00018 53.5 5.6 65 311-376 501-573 (986)
193 COG3587 Restriction endonuclea 64.3 52 0.0011 45.6 12.0 45 312-356 484-528 (985)
194 PF09848 DUF2075: Uncharacteri 64.0 6.1 0.00013 48.5 3.6 36 25-60 62-97 (352)
195 PF02562 PhoH: PhoH-like prote 58.0 11 0.00025 44.1 4.2 60 22-90 102-161 (205)
196 PRK10917 ATP-dependent DNA hel 57.9 55 0.0012 44.3 10.9 96 239-337 291-391 (681)
197 PRK14873 primosome assembly pr 52.7 57 0.0012 44.3 9.8 131 240-375 170-308 (665)
198 TIGR00643 recG ATP-dependent D 52.0 72 0.0016 42.8 10.5 96 239-336 265-364 (630)
199 PF04364 DNA_pol3_chi: DNA pol 51.5 50 0.0011 36.4 7.5 79 244-340 15-97 (137)
200 PRK10536 hypothetical protein; 48.0 23 0.00051 43.1 4.8 59 22-89 159-217 (262)
201 COG1199 DinG Rad3-related DNA 48.0 13 0.00029 49.0 3.0 40 21-60 193-234 (654)
202 PRK07003 DNA polymerase III su 46.0 18 0.0004 49.5 3.9 40 45-84 118-158 (830)
203 PF13173 AAA_14: AAA domain 46.0 19 0.00041 38.1 3.3 39 46-85 61-99 (128)
204 PF10593 Z1: Z1 domain; Inter 45.1 1.5E+02 0.0032 35.8 10.6 93 266-364 95-189 (239)
205 PRK06646 DNA polymerase III su 44.6 96 0.0021 35.3 8.5 40 239-278 10-49 (154)
206 PLN03025 replication factor C 42.9 35 0.00075 41.6 5.3 51 45-95 98-149 (319)
207 TIGR00580 mfd transcription-re 41.9 1.2E+02 0.0026 42.9 10.5 94 240-335 482-579 (926)
208 COG1198 PriA Primosomal protei 38.9 61 0.0013 44.6 6.9 82 237-321 224-306 (730)
209 PRK08691 DNA polymerase III su 35.8 62 0.0013 44.3 6.3 50 45-94 118-168 (709)
210 KOG0921 Dosage compensation co 35.1 5.5E+02 0.012 36.8 14.2 57 25-84 475-535 (1282)
211 PRK14086 dnaA chromosomal repl 34.3 6.1E+02 0.013 35.0 14.6 64 21-84 343-419 (617)
212 KOG1131 RNA polymerase II tran 33.7 18 0.00038 47.5 0.9 39 22-60 199-239 (755)
213 COG1736 DPH2 Diphthamide synth 32.6 3.5E+02 0.0076 34.8 11.5 139 255-417 119-264 (347)
214 PRK10689 transcription-repair 31.8 2.3E+02 0.0049 41.2 10.9 94 240-335 631-728 (1147)
215 cd00984 DnaB_C DnaB helicase C 30.2 4.2E+02 0.0091 30.7 11.0 39 327-365 196-240 (242)
216 PF05621 TniB: Bacterial TniB 30.1 37 0.0008 42.3 2.7 44 41-84 140-189 (302)
217 PRK12323 DNA polymerase III su 28.4 71 0.0015 43.6 5.0 40 44-83 122-162 (700)
218 KOG0701 dsRNA-specific nucleas 27.5 31 0.00068 50.4 1.7 94 261-357 295-400 (1606)
219 cd00046 DEXDc DEAD-like helica 26.9 2.9E+02 0.0062 27.5 7.8 57 240-296 10-71 (144)
220 PRK14949 DNA polymerase III su 25.7 74 0.0016 44.7 4.6 39 45-83 118-157 (944)
221 PRK14958 DNA polymerase III su 25.0 90 0.002 41.2 5.0 40 45-84 118-158 (509)
222 PF13604 AAA_30: AAA domain; P 23.5 1E+02 0.0023 35.4 4.6 40 45-86 92-132 (196)
223 COG2326 Uncharacterized conser 23.4 5.6E+02 0.012 32.1 10.5 86 254-372 68-159 (270)
224 TIGR00365 monothiol glutaredox 23.3 4.2E+02 0.0092 27.7 8.5 58 258-317 11-74 (97)
225 COG0608 RecJ Single-stranded D 23.3 2.5E+02 0.0055 36.8 8.5 91 243-339 21-122 (491)
226 PRK04132 replication factor C 23.1 83 0.0018 44.0 4.3 50 45-94 629-679 (846)
227 cd00268 DEADc DEAD-box helicas 23.0 8E+02 0.017 27.5 11.2 94 240-339 46-153 (203)
228 cd03028 GRX_PICOT_like Glutare 22.4 3.4E+02 0.0073 27.7 7.5 58 258-317 7-70 (90)
229 COG0626 MetC Cystathionine bet 22.3 1.8E+02 0.004 37.6 6.8 105 241-374 85-190 (396)
230 PRK14960 DNA polymerase III su 22.2 1E+02 0.0022 42.3 4.7 39 45-83 117-156 (702)
231 PF03808 Glyco_tran_WecB: Glyc 21.9 5E+02 0.011 29.6 9.4 72 244-317 34-108 (172)
232 cd06533 Glyco_transf_WecG_TagA 21.5 5.1E+02 0.011 29.6 9.4 72 244-317 32-106 (171)
233 PRK07994 DNA polymerase III su 21.1 87 0.0019 42.6 3.9 39 45-83 118-157 (647)
234 PHA00673 acetyltransferase dom 20.6 1.3E+02 0.0029 34.4 4.6 44 47-90 88-134 (154)
235 PF12846 AAA_10: AAA-like doma 20.4 87 0.0019 36.3 3.3 40 44-83 218-260 (304)
No 1
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.8e-92 Score=870.81 Aligned_cols=501 Identities=53% Similarity=0.877 Sum_probs=448.0
Q ss_pred hhhcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHH-hcccccEEEEEeccCCCCHHHHHHH
Q 000069 17 KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPLQNNLEELWAL 95 (2442)
Q Consensus 17 qIl~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALK-qLkSrrRLLLTGTPLQNNLeELwSL 95 (2442)
++..++|+|++|||+|+++ ++..|.+++|.++||||+|||||+.|+++..|. .|.+.+||||||||+||++.|||+|
T Consensus 488 qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaL 565 (1157)
T KOG0386|consen 488 QQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWAL 565 (1157)
T ss_pred HHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHH
Confidence 5566899999999999999 899999999999999999999999999999998 7899999999999999999999999
Q ss_pred HhhhcCCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEeccc
Q 000069 96 LNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEA 175 (2442)
Q Consensus 96 LNFLdPeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkceM 175 (2442)
|||+.|.+|++...|.+||+.||.+.+ +..++++++..++|+|||++||||+|||+|++|+.+||++++++++|.|
T Consensus 566 LNFlLP~IFnS~~~FeqWFN~PFantG----ek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~m 641 (1157)
T KOG0386|consen 566 LNFLLPNIFNSCKAFEQWFNQPFANTG----EKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDM 641 (1157)
T ss_pred HHHhccchhhhHhHHHHHhhhhhhhcC----CcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheeh
Confidence 999999999999999999999999988 3478899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhccc-----CCCCCcchHHHHHHHHhhcCcccccchhhhhhhccCCCCCC-ChhhhhccHHHHHHH
Q 000069 176 SAYQKLLMKRVEENLGSI-----GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDR 249 (2442)
Q Consensus 176 SaeQRkLYKrLeenL~Sl-----gsskgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~~l-~dLIRsSGKLEaLdr 249 (2442)
|++|+.+|+++...-... ++...+.++|.+|+||+||||||+|..... .+..++. ..+++.+|||++|++
T Consensus 642 SalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~----~~~~~~~~~dL~R~sGKfELLDR 717 (1157)
T KOG0386|consen 642 SALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVEN----SYTLHYDIKDLVRVSGKFELLDR 717 (1157)
T ss_pred hhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcc----ccccccChhHHHHhccHHHHHHh
Confidence 999999999998654332 445567899999999999999999854333 3333333 489999999999999
Q ss_pred HhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcc
Q 000069 250 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA 329 (2442)
Q Consensus 250 LL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQa 329 (2442)
+|+++++.|||||+|+||+.++++|++||..++++|+|+||.|+.++|..+++.||.++++||+||+||+|||+|+|||.
T Consensus 718 iLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQt 797 (1157)
T KOG0386|consen 718 ILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQT 797 (1157)
T ss_pred hhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhccCccCCCCCHHHHHHHH
Q 000069 330 ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYL 409 (2442)
Q Consensus 330 ADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIgAGkFDnksSaEEreELL 409 (2442)
||+||+||.+|||+.+.||.+|+|||||+++|+|+||++.+++||.|+.++.+|++++.++|++|.|+++++.++++.+|
T Consensus 798 adtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~~L 877 (1157)
T KOG0386|consen 798 ADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFL 877 (1157)
T ss_pred cceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCHHHHHHHHHhChhhHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhHHHHH
Q 000069 410 ESLLRECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKAL 489 (2442)
Q Consensus 410 EsLLEe~keEEe~eVLDDDELNeLLARSEeELelFqrmD~ErreeEle~W~kll~~~g~dgE~~P~lp~rL~~d~EL~~~ 489 (2442)
+.+++....++..++.+++.||++|+|+++|+++|.+||.++++.+... ....||+.+++++++
T Consensus 878 e~~l~~~~~~~~~~v~~~~~ln~~larseeE~~~f~~md~~r~~~e~~~----------------~~k~rl~ee~e~p~~ 941 (1157)
T KOG0386|consen 878 EQLLEMEGDEEEEEVPDDEVLNSMLARSEEEFELFHKMDEERRATENQQ----------------EKKPRLVEEAELPAD 941 (1157)
T ss_pred HHHHhCCCccccccCCcHHHHHHHHhcchHHHHHHHHhhHHHHhhhhhc----------------cccchhhhhhhcHHH
Confidence 9999987776667899999999999999999999999999986644211 114689999999854
Q ss_pred HHHhhhcCCCCCCCCCCccccccccccCcccccccCCCcccceeeccccCCCHHHHHHHHhccCCCCh
Q 000069 490 YEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSP 557 (2442)
Q Consensus 490 ye~~e~~~~~~~~v~~~~~~krk~e~~~~~d~q~~GRG~R~Rk~v~Y~d~ltE~q~lk~~~~e~~d~~ 557 (2442)
.-.... + ......++ .....+|||+|+|+.|.|+|.|||.||+++.+.+..+..
T Consensus 942 i~~~~~------~----~~~~~~~~----~~~~~~~rg~r~Rkev~y~d~~te~q~~k~~e~~~~~~~ 995 (1157)
T KOG0386|consen 942 IYKRDQ------G----VERLSEEE----EEEKILGRGRRARKEVVYSDRLTEMQWLKENESVNKEDS 995 (1157)
T ss_pred HHhcch------h----hhhhhhhh----hhhccccccccccceeecccccchhhhhhhccccccccc
Confidence 432211 0 00001011 112337999999999999999999999998887665544
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=6.9e-78 Score=728.08 Aligned_cols=399 Identities=47% Similarity=0.763 Sum_probs=345.0
Q ss_pred hcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHhh
Q 000069 19 VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNF 98 (2442)
Q Consensus 19 l~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLNF 98 (2442)
..++|+|+||||+++++ ++..|.++.|.|+||||||||||..|++++.|+.|.+.+||||||||+|||+.|||+||||
T Consensus 264 ~~~~fdV~iTsYEi~i~--dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnF 341 (971)
T KOG0385|consen 264 LPGRFDVCITSYEIAIK--DKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNF 341 (971)
T ss_pred ccCCCceEeehHHHHHh--hHHHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHh
Confidence 34599999999999999 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEeccccHH
Q 000069 99 LLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAY 178 (2442)
Q Consensus 99 LdPeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkceMSae 178 (2442)
|.|++|++.+.|..||..... +.....+.+||.+|+||+|||+|.+|+..||++.+..+++.|+..
T Consensus 342 llPdiF~~~e~F~swF~~~~~--------------~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~m 407 (971)
T KOG0385|consen 342 LLPDIFNSAEDFDSWFDFTNC--------------EGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSM 407 (971)
T ss_pred hchhhccCHHHHHHHHccccc--------------ccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHH
Confidence 999999999999999975311 111226789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-hcccCC---CCCcchHHHHHHHHhhcCcccccchhhhhhhccCCCCCCChhhhhccHHHHHHHHhhhh
Q 000069 179 QKLLMKRVEEN-LGSIGN---SKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKL 254 (2442)
Q Consensus 179 QRkLYKrLeen-L~Slgs---skgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~~l~dLIRsSGKLEaLdrLL~KL 254 (2442)
|++.|+.+... +..... .....++|++|+||+||||||||... +...+......++..||||.+|+++|+++
T Consensus 408 Qkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~----ePg~pyttdehLv~nSGKm~vLDkLL~~L 483 (971)
T KOG0385|consen 408 QKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGA----EPGPPYTTDEHLVTNSGKMLVLDKLLPKL 483 (971)
T ss_pred HHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCC----CCCCCCCcchHHHhcCcceehHHHHHHHH
Confidence 99999998554 222222 13467999999999999999999752 22233344678999999999999999999
Q ss_pred hcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEE
Q 000069 255 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 334 (2442)
Q Consensus 255 ratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVI 334 (2442)
++.|||||||+||+.++|+|++|+..++|.|+||||+++.++|...|+.||++++..||||+||||||+||||.+||+||
T Consensus 484 k~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVI 563 (971)
T KOG0385|consen 484 KEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVI 563 (971)
T ss_pred HhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhccCccCCCCCHHHHHHHHHHHHH
Q 000069 335 IFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 414 (2442)
Q Consensus 335 IYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIgAGkFDnksSaEEreELLEsLLE 414 (2442)
+||.+|||..++||++|||||||+++|+|||||+++|||++|+.|+..|+++.+.||+.|......+.......+-.+++
T Consensus 564 lyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r 643 (971)
T KOG0385|consen 564 LYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQGRLEEQKSNGLGKDELLNLLR 643 (971)
T ss_pred EecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccCchhhhhccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999844332222222333333444
Q ss_pred HHhh----hccCCCCCHHHHHHHHHhChh
Q 000069 415 ECKK----EEAAPVLDDDALNDLLARSES 439 (2442)
Q Consensus 415 e~ke----EEe~eVLDDDELNeLLARSEe 439 (2442)
.+.. ...... .+ +|+.+|.+.+.
T Consensus 644 ~g~~~~f~~~es~~-~d-Did~il~~~e~ 670 (971)
T KOG0385|consen 644 FGADPVFESKESTI-SD-DIDRILERGEE 670 (971)
T ss_pred cCchhhhhhccccc-ch-hHHHHHHhhhh
Confidence 3321 112222 22 78888877664
No 3
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=6.7e-76 Score=734.07 Aligned_cols=398 Identities=45% Similarity=0.742 Sum_probs=350.5
Q ss_pred CCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHhhhcC
Q 000069 22 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLP 101 (2442)
Q Consensus 22 KFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLNFLdP 101 (2442)
+|+++||||+++++ |+..|.+++|.+++|||||||||..|++|..|..|...+|||+||||+||++.|||+||+||+|
T Consensus 475 kf~~lltTye~~Lk--Dk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P 552 (1373)
T KOG0384|consen 475 KFNALLTTYEIVLK--DKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMP 552 (1373)
T ss_pred ccceeehhhHHHhc--cHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCC
Confidence 79999999999998 8889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEeccccHHHHH
Q 000069 102 NIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKL 181 (2442)
Q Consensus 102 eIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkceMSaeQRk 181 (2442)
..|.++..|...|.. .+...+..||++|+||||||+|+||++.||++.|.++.++||.+|++
T Consensus 553 ~kf~~~~~f~~~~~~------------------~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~ 614 (1373)
T KOG0384|consen 553 GKFDSWDEFLEEFDE------------------ETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQ 614 (1373)
T ss_pred CCCCcHHHHHHhhcc------------------hhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHH
Confidence 999999999886631 22345789999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HhcccCC---CCCcchHHHHHHHHhhcCcccccchhhhhhhccCCC----CCCChhhhhccHHHHHHHHhhh
Q 000069 182 LMKRVEE-NLGSIGN---SKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK----HYLPPIVRLCGKLEMLDRLLPK 253 (2442)
Q Consensus 182 LYKrLee-nL~Slgs---skgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe----~~l~dLIRsSGKLEaLdrLL~K 253 (2442)
+|++|.. ++..+.. ...-+++|++|.||+|||||||+....+.+...+.. ..+..++..|||+.+|++||.+
T Consensus 615 yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~r 694 (1373)
T KOG0384|consen 615 YYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPR 694 (1373)
T ss_pred HHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHH
Confidence 9999854 4433322 223579999999999999999999887776555442 4567889999999999999999
Q ss_pred hhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEE
Q 000069 254 LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 333 (2442)
Q Consensus 254 LratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTV 333 (2442)
|++.|||||||+||+.++|+|++||..++|.|.||||++..+-|+..|+.||+++++.|||||||||||+||||.+||||
T Consensus 695 Lk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTV 774 (1373)
T KOG0384|consen 695 LKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTV 774 (1373)
T ss_pred HhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhccCccCCCCC--HHHHHHHHHH
Q 000069 334 IIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTS--AEDRREYLES 411 (2442)
Q Consensus 334 IIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIgAGkFDnksS--aEEreELLEs 411 (2442)
||||.+|||+.++||+.|||||||++.|.||||++++|+|+.|++++.+|+.|++.||+.+......+ .....+.|..
T Consensus 775 IIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsa 854 (1373)
T KOG0384|consen 775 IIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSA 854 (1373)
T ss_pred EEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998765422111 1112344556
Q ss_pred HHHHHhh-----hcc-CCCCCHHHHHHHHHhChh
Q 000069 412 LLRECKK-----EEA-APVLDDDALNDLLARSES 439 (2442)
Q Consensus 412 LLEe~ke-----EEe-~eVLDDDELNeLLARSEe 439 (2442)
+|+-+.+ .+. ...+...+|++||.|.+.
T Consensus 855 ILKfGA~~lfke~ene~s~~~e~DIDeIL~rae~ 888 (1373)
T KOG0384|consen 855 ILKFGAYELFKEEENEESKFCEMDIDEILERAET 888 (1373)
T ss_pred HHHhchHHhhhccccccccccccCHHHHHhhccc
Confidence 6665432 122 223445778889988765
No 4
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=3.8e-68 Score=652.35 Aligned_cols=368 Identities=43% Similarity=0.761 Sum_probs=320.9
Q ss_pred CCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHhhhcC
Q 000069 22 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLP 101 (2442)
Q Consensus 22 KFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLNFLdP 101 (2442)
-|+|.||+|..+.. +...|.+.+|.|+|+||||||||+.+++|++|..|++.+||||||||++|++.|||+|++||.|
T Consensus 715 aFHVCItSYklv~q--d~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP 792 (1958)
T KOG0391|consen 715 AFHVCITSYKLVFQ--DLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMP 792 (1958)
T ss_pred eeEEeehhhHHHHh--HHHHHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhc
Confidence 58999999999987 6668999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEeccccHHHHH
Q 000069 102 NIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKL 181 (2442)
Q Consensus 102 eIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkceMSaeQRk 181 (2442)
.+|.+...|..||.+|+...-.. +.+.+...+.|||++|+||+|||+|.||+++||.|.||+|+|.||..|+.
T Consensus 793 ~~f~shd~fk~wfsnPltgmiEg-------sqeyn~klV~RLHkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~ 865 (1958)
T KOG0391|consen 793 QTFASHDIFKPWFSNPLTGMIEG-------SQEYNHKLVIRLHKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRA 865 (1958)
T ss_pred hhhhhhhhHHHHhcCcchhhccc-------chhhchHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHH
Confidence 99999999999999987644322 23344567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc---cCCCCCcchHHHHHHHHhhcCcccccchhh------------------------------------
Q 000069 182 LMKRVEENLGS---IGNSKGRSVHNSVMELRNICNHPYLSQLHA------------------------------------ 222 (2442)
Q Consensus 182 LYKrLeenL~S---lgsskgrsLlNiLMQLRKICNHPyLfqlee------------------------------------ 222 (2442)
||+.+...... +......+++|++|+||++||||.||...-
T Consensus 866 LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls 945 (1958)
T KOG0391|consen 866 LYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLS 945 (1958)
T ss_pred HHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhh
Confidence 99988654332 223345578999999999999987630000
Q ss_pred ----------------------------------------------------------hh--------------------
Q 000069 223 ----------------------------------------------------------EE-------------------- 224 (2442)
Q Consensus 223 ----------------------------------------------------------EE-------------------- 224 (2442)
++
T Consensus 946 ~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~ 1025 (1958)
T KOG0391|consen 946 EEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQL 1025 (1958)
T ss_pred cCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeecccc
Confidence 00
Q ss_pred ------------hh------------------------------------------------------------------
Q 000069 225 ------------VD------------------------------------------------------------------ 226 (2442)
Q Consensus 225 ------------VE------------------------------------------------------------------ 226 (2442)
.+
T Consensus 1026 r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~ 1105 (1958)
T KOG0391|consen 1026 RSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGV 1105 (1958)
T ss_pred ccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCC
Confidence 00
Q ss_pred -----------------------------------ccC--C-----CCC-------------------------------
Q 000069 227 -----------------------------------TLI--P-----KHY------------------------------- 233 (2442)
Q Consensus 227 -----------------------------------eLi--p-----e~~------------------------------- 233 (2442)
.++ . ..+
T Consensus 1106 pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le 1185 (1958)
T KOG0391|consen 1106 PKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLE 1185 (1958)
T ss_pred CCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHH
Confidence 000 0 000
Q ss_pred ------------------------------------------------------------------CChhhhhccHHHHH
Q 000069 234 ------------------------------------------------------------------LPPIVRLCGKLEML 247 (2442)
Q Consensus 234 ------------------------------------------------------------------l~dLIRsSGKLEaL 247 (2442)
+..+...|||++.|
T Consensus 1186 ~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtL 1265 (1958)
T KOG0391|consen 1186 SLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTL 1265 (1958)
T ss_pred HHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHH
Confidence 00001134799999
Q ss_pred HHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCC
Q 000069 248 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 327 (2442)
Q Consensus 248 drLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNL 327 (2442)
.-+|.+++..|||+|||+||+.++|+|+.||.++||.|+||||+++.++|+.++++||+ |..+||||+||+.||+||||
T Consensus 1266 AiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNL 1344 (1958)
T KOG0391|consen 1266 AILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINL 1344 (1958)
T ss_pred HHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcC-CCceEEEEEeccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999986 67899999999999999999
Q ss_pred cccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhccCccCCC
Q 000069 328 QAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNN 399 (2442)
Q Consensus 328 QaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIgAGkFDnk 399 (2442)
+.||+|||||.+|||.++.||++|||||||+++|+|||||.+.|||++|+.++.+|+.+.+.+|++|.|...
T Consensus 1345 tgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdfTt~ 1416 (1958)
T KOG0391|consen 1345 TGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDFTTA 1416 (1958)
T ss_pred ccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999877543
No 5
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=9.6e-65 Score=650.24 Aligned_cols=400 Identities=45% Similarity=0.761 Sum_probs=344.8
Q ss_pred cCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHhhh
Q 000069 20 HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFL 99 (2442)
Q Consensus 20 ~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLNFL 99 (2442)
..+|+|+||||+++.+ ++..|.+++|++|||||||+|||..++++++++.+.+.+||+|||||++|++.|||+||+||
T Consensus 267 ~~~~dVvITSYe~l~~--e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL 344 (1033)
T PLN03142 267 AGKFDVCVTSFEMAIK--EKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFL 344 (1033)
T ss_pred ccCCCcceecHHHHHH--HHHHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcC
Confidence 3579999999999988 56689999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEeccccHHH
Q 000069 100 LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQ 179 (2442)
Q Consensus 100 dPeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkceMSaeQ 179 (2442)
.|++|.+...|..||..... ......+.+||.+|+|||+||+|.+|...||++.+.+++|.|++.|
T Consensus 345 ~P~~f~s~~~F~~~f~~~~~--------------~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Q 410 (1033)
T PLN03142 345 LPEIFSSAETFDEWFQISGE--------------NDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQ 410 (1033)
T ss_pred CCCcCCCHHHHHHHHccccc--------------cchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHH
Confidence 99999999999999975211 0112357889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-ccC-CCCCcchHHHHHHHHhhcCcccccchhhhhhhccCCCCCCChhhhhccHHHHHHHHhhhhhcC
Q 000069 180 KLLMKRVEENLG-SIG-NSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT 257 (2442)
Q Consensus 180 RkLYKrLeenL~-Slg-sskgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~~l~dLIRsSGKLEaLdrLL~KLrat 257 (2442)
+.+|+.+..... ... ......+++.+|+||++|+||+++...... .+......++..++|+.+|+++|.++...
T Consensus 411 k~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~----~~~~~~e~lie~SgKl~lLdkLL~~Lk~~ 486 (1033)
T PLN03142 411 KQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPG----PPYTTGEHLVENSGKMVLLDKLLPKLKER 486 (1033)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhccccc----CcccchhHHhhhhhHHHHHHHHHHHHHhc
Confidence 999998865421 111 122345889999999999999997543211 11112345778899999999999999999
Q ss_pred CCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeC
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFD 337 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYD 337 (2442)
|+||||||||+.++++|+++|..+|+.|++|+|+++..+|+.++++||.+++..+|||+||+|||+||||+.||+||+||
T Consensus 487 g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD 566 (1033)
T PLN03142 487 DSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYD 566 (1033)
T ss_pred CCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred CCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhccCccCCC--CCHHHHHHHHHHHHHH
Q 000069 338 TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNN--TSAEDRREYLESLLRE 415 (2442)
Q Consensus 338 pPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIgAGkFDnk--sSaEEreELLEsLLEe 415 (2442)
++|||..++||+||+|||||+++|+||||++.+|+|++|++++..|+.++..+++.|.+... .+.++ |..+++.
T Consensus 567 ~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~~~~~~~~~e----L~~ll~~ 642 (1033)
T PLN03142 567 SDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDE----LLQMVRY 642 (1033)
T ss_pred CCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCcccccccCCHHH----HHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998866432 23333 3344443
Q ss_pred Hhh---hccCCCCCHHHHHHHHHhChhhHHH
Q 000069 416 CKK---EEAAPVLDDDALNDLLARSESEIDV 443 (2442)
Q Consensus 416 ~ke---EEe~eVLDDDELNeLLARSEeELel 443 (2442)
+.+ ......+.+++|+.||+++++....
T Consensus 643 ga~~~f~~~~~~~~~~did~il~~~~~~~~~ 673 (1033)
T PLN03142 643 GAEMVFSSKDSTITDEDIDRIIAKGEEATAE 673 (1033)
T ss_pred ChHHhhhccCCCCCHHHHHHHHHhcHHHHHH
Confidence 221 2233467899999999999876643
No 6
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.3e-62 Score=598.67 Aligned_cols=369 Identities=36% Similarity=0.613 Sum_probs=322.8
Q ss_pred CCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHhhhcC
Q 000069 22 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLP 101 (2442)
Q Consensus 22 KFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLNFLdP 101 (2442)
.-.|+||||+.++.. ...+.++.|++||+||+|+|||.+++.+.+++++++.+|++|||||+|||+.|||+|+.|+.|
T Consensus 315 ~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~P 392 (923)
T KOG0387|consen 315 DGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFP 392 (923)
T ss_pred cCcEEEEehhhhccc--CcccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccC
Confidence 346999999999874 347899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhh-cCCccEEEEEeccccHHHH
Q 000069 102 NIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVEN-ELPEKIERLVRCEASAYQK 180 (2442)
Q Consensus 102 eIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVek-dLP~KvE~VIkceMSaeQR 180 (2442)
+.++....|.+.|..|+..++......... ...+.....|+.+++||+|||+|.||.. .||.|.+++++|.||.+|+
T Consensus 393 G~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv--~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR 470 (923)
T KOG0387|consen 393 GKLGTLPVFQQNFEHPINRGGYANASPRQV--QTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQR 470 (923)
T ss_pred CcccchHHHHhhhhhheeccccCCCCHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHH
Confidence 999999999999999999888776554332 2334456789999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHhcccC-CCCCcchHHHHHHHHhhcCcccccchhhhhhhccCCCCCCChhhhhccHHHHHHHHhhhhhcCCC
Q 000069 181 LLMKRVEENLGSIG-NSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDH 259 (2442)
Q Consensus 181 kLYKrLeenL~Slg-sskgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~~l~dLIRsSGKLEaLdrLL~KLratGh 259 (2442)
++|.++...-.-.. -......+..+..||++||||.+.....+.... .......+..|||+++|..+|..|+..|+
T Consensus 471 ~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~---~~D~~g~~k~sGKm~vl~~ll~~W~kqg~ 547 (923)
T KOG0387|consen 471 RLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQ---GPDYEGDPKRSGKMKVLAKLLKDWKKQGD 547 (923)
T ss_pred HHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccccc---CCCcCCChhhcchHHHHHHHHHHHhhCCC
Confidence 99998854321100 012234566778899999999997654322111 11112567899999999999999999999
Q ss_pred eEEEEEchHHHHHHHHHHHh-hcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCC
Q 000069 260 RVLFFSTMTRLLDVMEDYLT-FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT 338 (2442)
Q Consensus 260 KVLIFSQFtdTLDILED~Lr-krGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDp 338 (2442)
|||+|+|.+.++++|+.+|. ..||.|+|+||.|+...|+.++++||+. ..++|||++|++||+||||+.||+||+|||
T Consensus 548 rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~-~s~~VFLLTTrvGGLGlNLTgAnRVIIfDP 626 (923)
T KOG0387|consen 548 RVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNED-ESIFVFLLTTRVGGLGLNLTGANRVIIFDP 626 (923)
T ss_pred EEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCC-CceEEEEEEecccccccccccCceEEEECC
Confidence 99999999999999999998 6899999999999999999999999864 458999999999999999999999999999
Q ss_pred CCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhccCccCC
Q 000069 339 DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDN 398 (2442)
Q Consensus 339 PWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIgAGkFDn 398 (2442)
+|||..+.||..|++||||+++|.||||++.+||||+||.++.+|..+.++++...+-..
T Consensus 627 dWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~R 686 (923)
T KOG0387|consen 627 DWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQRR 686 (923)
T ss_pred CCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHHhh
Confidence 999999999999999999999999999999999999999999999999999997643333
No 7
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=7.5e-62 Score=591.29 Aligned_cols=368 Identities=42% Similarity=0.634 Sum_probs=314.8
Q ss_pred CCCcEEEEchHHHhc-cCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHhhh
Q 000069 21 QKFNVLLTTYEYLMN-KHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFL 99 (2442)
Q Consensus 21 qKFDVVITTYE~LrK-e~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLNFL 99 (2442)
.+|||++|||..... ..|+.+|++.+|+++|.||||.+||..|.+|+.|..+.+.+||||||||+|||+.|||+||.|+
T Consensus 498 ~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~Fv 577 (941)
T KOG0389|consen 498 DDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFV 577 (941)
T ss_pred CCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHH
Confidence 389999999998865 4578889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-hHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEeccccHH
Q 000069 100 LPNIFNS-SEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAY 178 (2442)
Q Consensus 100 dPeIFnS-~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkceMSae 178 (2442)
.|++|.. .+.+...|...-.. ........+.++ .|.|-..++.||+|||+|.+|+++||+|..++.+|.|+..
T Consensus 578 lP~vF~~~~~dl~~if~~k~~~--d~d~e~~~l~qe----rIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~ 651 (941)
T KOG0389|consen 578 LPKVFDSSMEDLDVIFKAKKTS--DGDIENALLSQE----RISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEK 651 (941)
T ss_pred hhHhhhccchHHHHHHhccCCc--cchhhHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchH
Confidence 9999975 56777777643322 122233333332 4788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccC----CCCCcchHHHHHHHHhhcCcccccchhhh---------------------------hhhc
Q 000069 179 QKLLMKRVEENLGSIG----NSKGRSVHNSVMELRNICNHPYLSQLHAE---------------------------EVDT 227 (2442)
Q Consensus 179 QRkLYKrLeenL~Slg----sskgrsLlNiLMQLRKICNHPyLfqleeE---------------------------EVEe 227 (2442)
|+.+|..+.+.+.... ......-.+.+|+||++++||.|++.... ++..
T Consensus 652 Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~ 731 (941)
T KOG0389|consen 652 QKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEV 731 (941)
T ss_pred HHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHh
Confidence 9999999877663111 11111115699999999999988642210 0000
Q ss_pred ---------------cCCCCCCChhhhhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCC
Q 000069 228 ---------------LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHT 292 (2442)
Q Consensus 228 ---------------Lipe~~l~dLIRsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGST 292 (2442)
+.....-.+.|-.|||++.|..+|++++..|+|||||+||+.++|||+.+|..++++|+||||+|
T Consensus 732 msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsT 811 (941)
T KOG0389|consen 732 MSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGST 811 (941)
T ss_pred hhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCc
Confidence 00011124567789999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCH
Q 000069 293 SGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 372 (2442)
Q Consensus 293 S~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSV 372 (2442)
....|+.+|+.||. +..++|||+||+|||.||||++||+||+||.++||..+.||.+||||+||+|+|+|||||+++||
T Consensus 812 qV~~RQ~lId~Fn~-d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 812 QVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred cchHHHHHHHhhcc-CCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcH
Confidence 99999999999976 55799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCc
Q 000069 373 EEQVRASAEHKLGVANQSITAGF 395 (2442)
Q Consensus 373 EErILERaqrKLdLinKVIgAGk 395 (2442)
||.|+..+..|+.+...+...+.
T Consensus 891 EE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 891 EEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred HHHHHHHHHHhhhhhhhhccCcc
Confidence 99999999999999998887653
No 8
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=4.2e-62 Score=583.28 Aligned_cols=361 Identities=44% Similarity=0.787 Sum_probs=316.2
Q ss_pred CCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHhhhc
Q 000069 21 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLL 100 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLNFLd 100 (2442)
..|+|+||||+.+.. |..+|.+++|.|+|+|||+-||...|.+++.|..|++++||||||||+||++.|||+||+|+.
T Consensus 672 a~fhVviTSYQlvVt--Deky~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIM 749 (1185)
T KOG0388|consen 672 APFHVVITSYQLVVT--DEKYLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIM 749 (1185)
T ss_pred CCceEEEEeeeeeec--hHHHHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHh
Confidence 579999999999987 666899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEeccccHHHH
Q 000069 101 PNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQK 180 (2442)
Q Consensus 101 PeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkceMSaeQR 180 (2442)
|.+|.+.+.|.+||.+.++..-.. ....+...++|||.+|+||||||.|++|...|-.+.+..++|+|+..|+
T Consensus 750 PsLFDshneFseWFSKdIEshAe~-------~~tlneqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~ 822 (1185)
T KOG0388|consen 750 PSLFDSHNEFSEWFSKDIESHAEM-------NTTLNEQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQK 822 (1185)
T ss_pred hHhhhchHHHHHHHhhhhHhHHHh-------cCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHH
Confidence 999999999999998866543221 1112223578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCCcchHHHHHHHHhhcCcccccchhhh-------------------------------------
Q 000069 181 LLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAE------------------------------------- 223 (2442)
Q Consensus 181 kLYKrLeenL~SlgsskgrsLlNiLMQLRKICNHPyLfqleeE------------------------------------- 223 (2442)
.||+.+...+... .+.+++|+||++||||.||.....
T Consensus 823 ~lYq~ik~~iS~~------E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le 896 (1185)
T KOG0388|consen 823 VLYQEIKRSISSM------EMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALE 896 (1185)
T ss_pred HHHHHHHHHhhHH------HHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHH
Confidence 9999998765432 234699999999999977521000
Q ss_pred -----------hhh-----------------------------------------cc-----------------------
Q 000069 224 -----------EVD-----------------------------------------TL----------------------- 228 (2442)
Q Consensus 224 -----------EVE-----------------------------------------eL----------------------- 228 (2442)
.+. .+
T Consensus 897 ~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~ 976 (1185)
T KOG0388|consen 897 MFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQ 976 (1185)
T ss_pred HHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhh
Confidence 000 00
Q ss_pred ------CCC-----------------------------CC---CChhhhhccHHHHHHHHhhhhhcCCCeEEEEEchHHH
Q 000069 229 ------IPK-----------------------------HY---LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRL 270 (2442)
Q Consensus 229 ------ipe-----------------------------~~---l~dLIRsSGKLEaLdrLL~KLratGhKVLIFSQFtdT 270 (2442)
.+. .+ ...++..|||+..|+.+|.++++.|||||+|+||+.+
T Consensus 977 ~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM 1056 (1185)
T KOG0388|consen 977 RHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKM 1056 (1185)
T ss_pred hheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHH
Confidence 000 00 0112456789999999999999999999999999999
Q ss_pred HHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhc
Q 000069 271 LDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQA 350 (2442)
Q Consensus 271 LDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIG 350 (2442)
+++|++||.+++|.|+|+||+.+..+|.+++..|+. +++||||+||+|||+||||+.||+|||||.+|||..+.||++
T Consensus 1057 ~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMD 1134 (1185)
T KOG0388|consen 1057 IDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMD 1134 (1185)
T ss_pred HHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHH
Confidence 999999999999999999999999999999999976 679999999999999999999999999999999999999999
Q ss_pred cccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhccCccCC
Q 000069 351 RAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDN 398 (2442)
Q Consensus 351 RAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIgAGkFDn 398 (2442)
|+||+||+++|+||||++.+|+||+|+.++.+|-.+...||.++.|..
T Consensus 1135 RAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~~~qg 1182 (1185)
T KOG0388|consen 1135 RAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGNIFQG 1182 (1185)
T ss_pred HHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCCcccC
Confidence 999999999999999999999999999999999999999998876654
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=1.6e-59 Score=584.60 Aligned_cols=368 Identities=38% Similarity=0.654 Sum_probs=319.1
Q ss_pred CCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHhhhcC
Q 000069 22 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLP 101 (2442)
Q Consensus 22 KFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLNFLdP 101 (2442)
+.+|+||+|+.+++ |..+|.++.|.|+|+||+|-|||..++++++++++++.|||+|||||+|||..|||+|++||+|
T Consensus 1078 ~~~iiVtSYDv~Rn--D~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMP 1155 (1549)
T KOG0392|consen 1078 NANIIVTSYDVVRN--DVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMP 1155 (1549)
T ss_pred ccceEEeeHHHHHH--HHHHHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcc
Confidence 45999999999999 5558999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEeccccHHHHH
Q 000069 102 NIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKL 181 (2442)
Q Consensus 102 eIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkceMSaeQRk 181 (2442)
+.++.-++|...|.+|+...+...... ...+.....+..||+..-|||+||+|.||..+||+|..+-++|+|++.|++
T Consensus 1156 GfLGtEKqFqsrf~kpI~asRd~K~Ss--ke~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~k 1233 (1549)
T KOG0392|consen 1156 GFLGTEKQFQSRFGKPILASRDPKSSS--KEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKK 1233 (1549)
T ss_pred cccCcHHHHHHHhcchhhhhcCcccch--hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHH
Confidence 999999999999999998887654433 345667788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc-----------CCCCCcchHHHHHHHHhhcCcccccchhhh-hhhccCC--CCCCC--hhhhhccHHH
Q 000069 182 LMKRVEENLGSI-----------GNSKGRSVHNSVMELRNICNHPYLSQLHAE-EVDTLIP--KHYLP--PIVRLCGKLE 245 (2442)
Q Consensus 182 LYKrLeenL~Sl-----------gsskgrsLlNiLMQLRKICNHPyLfqleeE-EVEeLip--e~~l~--dLIRsSGKLE 245 (2442)
||+.+....... .......+++.+..||+.|+||.+...... ....... .++.. +-+..++|+.
T Consensus 1234 LY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~ 1313 (1549)
T KOG0392|consen 1234 LYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLS 1313 (1549)
T ss_pred HHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHH
Confidence 999997663211 111134577889999999999998643211 0100000 01112 2267899999
Q ss_pred HHHHHhhhhh--------------cCCCeEEEEEchHHHHHHHHHHHhhc---CceEEEEeCCCCHHHHHHHHHHHhcCC
Q 000069 246 MLDRLLPKLK--------------ATDHRVLFFSTMTRLLDVMEDYLTFK---QYRYLRLDGHTSGGDRGALIDKFNQQD 308 (2442)
Q Consensus 246 aLdrLL~KLr--------------atGhKVLIFSQFtdTLDILED~Lrkr---GIkylRLDGSTS~dEReeIIDrFNapD 308 (2442)
+|.++|...- ..+||+|||||+..++|++++-|.+. .+.|+|+||+....+|++++++||. |
T Consensus 1314 AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~-D 1392 (1549)
T KOG0392|consen 1314 ALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNE-D 1392 (1549)
T ss_pred HHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcC-C
Confidence 9999997652 14699999999999999998888443 5789999999999999999999985 5
Q ss_pred CCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHH
Q 000069 309 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN 388 (2442)
Q Consensus 309 S~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLin 388 (2442)
..+.|+|++|.+||.||||+.||||||++.+|||.+++||++|||||||+|.|.|||||+++|+||+|+..++.|+++++
T Consensus 1393 ptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAn 1472 (1549)
T KOG0392|consen 1393 PTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVAN 1472 (1549)
T ss_pred CceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccC
Q 000069 389 QSITAG 394 (2442)
Q Consensus 389 KVIgAG 394 (2442)
.++...
T Consensus 1473 tvInqq 1478 (1549)
T KOG0392|consen 1473 TVINQQ 1478 (1549)
T ss_pred HHHhcc
Confidence 999753
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=6.9e-52 Score=515.65 Aligned_cols=367 Identities=34% Similarity=0.508 Sum_probs=312.0
Q ss_pred CcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHhhhcCC
Q 000069 23 FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPN 102 (2442)
Q Consensus 23 FDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLNFLdPe 102 (2442)
+-|+|.+|+.+++ +...+....+++||+||+|++||..++++++|..+.+++||||||||+||++.|+|++|+|++|+
T Consensus 355 ~~vli~sye~~~~--~~~~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~ 432 (776)
T KOG0390|consen 355 TPVLIISYETASD--YCRKILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPG 432 (776)
T ss_pred EEEEeccHHHHHH--HHHHHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChh
Confidence 3499999999986 44468888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEeccccHHHHHH
Q 000069 103 IFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLL 182 (2442)
Q Consensus 103 IFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkceMSaeQRkL 182 (2442)
++++...|...|..+....+...........++ -+++|..+...|++||+-..+.+.||.+.++++.|.+++.|+.+
T Consensus 433 ~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~---rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~ 509 (776)
T KOG0390|consen 433 FLGSISSFKKKFEIPILRGRDADASEEDREREE---RLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKEL 509 (776)
T ss_pred hccchHHHHHHhhcccccccCCCcchhhhhhHH---HHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHH
Confidence 999999999999988887766544443333322 28899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCcchHHHHHHHHhhcCcccccchhhhhhh--cc-------CCC--CCCChhhhhccHHHHHHHHh
Q 000069 183 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVD--TL-------IPK--HYLPPIVRLCGKLEMLDRLL 251 (2442)
Q Consensus 183 YKrLeenL~SlgsskgrsLlNiLMQLRKICNHPyLfqleeEEVE--eL-------ipe--~~l~dLIRsSGKLEaLdrLL 251 (2442)
|+.+.+.. . ........+..+..|+++|+||.|......... .. ... .........++||..|..+|
T Consensus 510 ~~~l~~~~-~-~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll 587 (776)
T KOG0390|consen 510 YKKLLDSM-K-MRTLKGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLL 587 (776)
T ss_pred HHHHHHHH-H-hhhhhcchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHH
Confidence 99998764 1 111122256778889999999999741111000 00 000 01111223478999999998
Q ss_pred hhhhcC-CCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCccc
Q 000069 252 PKLKAT-DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAA 330 (2442)
Q Consensus 252 ~KLrat-GhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaA 330 (2442)
...++. ..++++.++|+.++++++..++++|+.++++||.++..+|+.+++.||++.+..+|||+|+.|||+||||..|
T Consensus 588 ~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGA 667 (776)
T KOG0390|consen 588 EVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGA 667 (776)
T ss_pred HHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeeccc
Confidence 655443 4677777899999999999999999999999999999999999999999999899999999999999999999
Q ss_pred CEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhccCcc
Q 000069 331 DTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 396 (2442)
Q Consensus 331 DTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIgAGkF 396 (2442)
++||+||++|||+.+.||++||||.||+|.|+||||++.+|+||+||+|+.+|..+-..+++....
T Consensus 668 sRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~ 733 (776)
T KOG0390|consen 668 SRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEED 733 (776)
T ss_pred ceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccc
Confidence 999999999999999999999999999999999999999999999999999999999988876543
No 11
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=1.1e-50 Score=494.36 Aligned_cols=426 Identities=26% Similarity=0.405 Sum_probs=338.9
Q ss_pred hhcCCCcEEEEchHHHhccC---C----------cCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEecc
Q 000069 18 IVHQKFNVLLTTYEYLMNKH---D----------RPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTP 84 (2442)
Q Consensus 18 Il~qKFDVVITTYE~LrKe~---D----------Rs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTP 84 (2442)
.|+.+--|+|+-|+.++.-. + ...|..-..|+||+||||-|||..+.++++|..+++.+||+|||||
T Consensus 780 ~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTP 859 (1567)
T KOG1015|consen 780 RWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTP 859 (1567)
T ss_pred HHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCc
Confidence 34455579999999987511 0 1124455789999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCC
Q 000069 85 LQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELP 164 (2442)
Q Consensus 85 LQNNLeELwSLLNFLdPeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP 164 (2442)
+|||+.|+|.|++|+.|+++++...|.++|.+|+.+++..........-. .....-|+.+|..|+-|+....+..+||
T Consensus 860 LQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~M--k~RsHILye~LkgcVqRkDy~Vltk~LP 937 (1567)
T KOG1015|consen 860 LQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADSTMVDVRVM--KKRSHILYEMLKGCVQRKDYTVLTKFLP 937 (1567)
T ss_pred hhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCCcHHHHHHH--HHHHHHHHHHHHHHHhhhhhhhhcccCC
Confidence 99999999999999999999999999999999999988765433221111 1123458889999999999999999999
Q ss_pred ccEEEEEeccccHHHHHHHHHHHHHhcccCC------CCCcchHHHHHHHHhhcCcccccchhhhhh-----------hc
Q 000069 165 EKIERLVRCEASAYQKLLMKRVEENLGSIGN------SKGRSVHNSVMELRNICNHPYLSQLHAEEV-----------DT 227 (2442)
Q Consensus 165 ~KvE~VIkceMSaeQRkLYKrLeenL~Slgs------skgrsLlNiLMQLRKICNHPyLfqleeEEV-----------Ee 227 (2442)
++.+++|.+.||++|..||+.+.......++ ..+..++..+.-|++|.+||+..++..... +.
T Consensus 938 PK~eyVi~vrltelQ~~LYq~yL~h~~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~ 1017 (1567)
T KOG1015|consen 938 PKHEYVIAVRLTELQCKLYQYYLDHLTGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDE 1017 (1567)
T ss_pred CceeEEEEEeccHHHHHHHHHHHhhccccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhc
Confidence 9999999999999999999999874433222 245678999999999999998743221100 00
Q ss_pred cC------------------------------------------------------------------------------
Q 000069 228 LI------------------------------------------------------------------------------ 229 (2442)
Q Consensus 228 Li------------------------------------------------------------------------------ 229 (2442)
++
T Consensus 1018 fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag 1097 (1567)
T KOG1015|consen 1018 FIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAG 1097 (1567)
T ss_pred cccCCCccccccccccchhhcccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccc
Confidence 00
Q ss_pred --------CCCCC--------ChhhhhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhh-------------
Q 000069 230 --------PKHYL--------PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF------------- 280 (2442)
Q Consensus 230 --------pe~~l--------~dLIRsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrk------------- 280 (2442)
+..|+ ......|+||.+|.+||....+-|+|+|||+|....+++|++||..
T Consensus 1098 ~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~ 1177 (1567)
T KOG1015|consen 1098 SSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPL 1177 (1567)
T ss_pred cccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCcccccccc
Confidence 00000 0112467899999999999999999999999999999999999942
Q ss_pred ---------cCceEEEEeCCCCHHHHHHHHHHHhcCCC-CceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhc
Q 000069 281 ---------KQYRYLRLDGHTSGGDRGALIDKFNQQDS-PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQA 350 (2442)
Q Consensus 281 ---------rGIkylRLDGSTS~dEReeIIDrFNapDS-~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIG 350 (2442)
+|..|.||||++....|.++.++||.+.. ..++|||||+||++||||.+||+|||||..|||..+.|.|-
T Consensus 1178 ~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIF 1257 (1567)
T KOG1015|consen 1178 IYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIF 1257 (1567)
T ss_pred ccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHH
Confidence 35689999999999999999999998754 57889999999999999999999999999999999999999
Q ss_pred cccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhccCccCCCCCHHHHHHHHHHH---HHHHhhhccCCCCCH
Q 000069 351 RAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESL---LRECKKEEAAPVLDD 427 (2442)
Q Consensus 351 RAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIgAGkFDnksSaEEreELLEsL---LEe~keEEe~eVLDD 427 (2442)
|++|+||+++|+||||++.+|+|++||.|+..|..+..+|++..+....++..++.++...- +....+.+......|
T Consensus 1258 RvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv~Rhy~~neLteLy~fep~~ddp~sEr~~~~lpKd 1337 (1567)
T KOG1015|consen 1258 RVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQVERHYTMNELTELYTFEPDLDDPNSERDTPMLPKD 1337 (1567)
T ss_pred HHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHHHHHhhHhhhHHHhhcCCccCCcccccccccCCch
Confidence 99999999999999999999999999999999999999999876666666666655544321 111111122234556
Q ss_pred HHHHHHHHhChhhHHHHH
Q 000069 428 DALNDLLARSESEIDVFE 445 (2442)
Q Consensus 428 DELNeLLARSEeELelFq 445 (2442)
..+.+++...+..+--+.
T Consensus 1338 rllae~l~~~q~~i~~y~ 1355 (1567)
T KOG1015|consen 1338 RLLAELLQIHQEHIVGYH 1355 (1567)
T ss_pred hHHHHHHHHHHHHhhhhh
Confidence 677777776666554443
No 12
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=3.5e-48 Score=486.19 Aligned_cols=364 Identities=43% Similarity=0.673 Sum_probs=316.8
Q ss_pred CcEEEEchHHHhcc-CCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHh-hhc
Q 000069 23 FNVLLTTYEYLMNK-HDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLN-FLL 100 (2442)
Q Consensus 23 FDVVITTYE~LrKe-~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLN-FLd 100 (2442)
|++++|||+++.+. .+...+.++.|+++|+||||++||..+..+++++.+++.+|++|||||++|++.|||++++ |+.
T Consensus 448 ~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~ 527 (866)
T COG0553 448 FDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLN 527 (866)
T ss_pred eeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhC
Confidence 89999999999872 1345799999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCCC-ChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhH--HhhcCCccEEEEEeccccH
Q 000069 101 PNIFN-SSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHK--VENELPEKIERLVRCEASA 177 (2442)
Q Consensus 101 PeIFn-S~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKD--VekdLP~KvE~VIkceMSa 177 (2442)
|..++ ....|..||..+......... .+.....+.+|+++++||++||++.+ +...||++.+.++.|.|+.
T Consensus 528 p~~~~~~~~~f~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~ 601 (866)
T COG0553 528 PGLLGTSFAIFTRLFEKPIQAEEDIGP------LEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSE 601 (866)
T ss_pred CccccchHHHHHHHHhhhhhhcccccc------hhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccH
Confidence 99999 569999999988776654322 12223445669999999999999999 8889999999999999999
Q ss_pred HHHHHHHHHHH---Hhc----ccCCC---------CCcchHHHHHHHHhhcCcccccchh-hhhhhc--------cCCCC
Q 000069 178 YQKLLMKRVEE---NLG----SIGNS---------KGRSVHNSVMELRNICNHPYLSQLH-AEEVDT--------LIPKH 232 (2442)
Q Consensus 178 eQRkLYKrLee---nL~----Slgss---------kgrsLlNiLMQLRKICNHPyLfqle-eEEVEe--------Lipe~ 232 (2442)
.|+.+|+.+.. ... ..... ....+++.+++||++|+||.++... ...... .....
T Consensus 602 ~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~ 681 (866)
T COG0553 602 EQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDY 681 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhccccccc
Confidence 99999998866 211 11111 1456788999999999999997654 111110 01112
Q ss_pred CCChhhhhc-cHHHHHHHHh-hhhhcCCC--eEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 000069 233 YLPPIVRLC-GKLEMLDRLL-PKLKATDH--RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 308 (2442)
Q Consensus 233 ~l~dLIRsS-GKLEaLdrLL-~KLratGh--KVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapD 308 (2442)
....++..+ +|+..|.++| ..+...++ |+|||+||+.++++|+.+|...++.|++++|+++...|..++++|+++
T Consensus 682 ~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~- 760 (866)
T COG0553 682 LKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD- 760 (866)
T ss_pred ccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-
Confidence 234567788 9999999999 88999999 999999999999999999999999999999999999999999999876
Q ss_pred CCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHH
Q 000069 309 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN 388 (2442)
Q Consensus 309 S~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLin 388 (2442)
....|||+++++||.||||+.|++||+||++|||..+.||++|+|||||++.|.||+|++++|+||+|+.++..|+.+..
T Consensus 761 ~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~ 840 (866)
T COG0553 761 EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLD 840 (866)
T ss_pred CCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcc
Q 000069 389 QSITA 393 (2442)
Q Consensus 389 KVIgA 393 (2442)
.+++.
T Consensus 841 ~~~~~ 845 (866)
T COG0553 841 SLIDA 845 (866)
T ss_pred HHhhh
Confidence 99985
No 13
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.2e-46 Score=452.40 Aligned_cols=355 Identities=29% Similarity=0.471 Sum_probs=298.9
Q ss_pred CCCcEEEEchHHHhc--------cCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHH
Q 000069 21 QKFNVLLTTYEYLMN--------KHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEEL 92 (2442)
Q Consensus 21 qKFDVVITTYE~LrK--------e~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeEL 92 (2442)
.+||||||||..+.+ ......|.++.|.+||+||||.+||+.++...++..+.+.+||+|||||+||++.|+
T Consensus 430 ~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~Dv 509 (901)
T KOG4439|consen 430 RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDV 509 (901)
T ss_pred hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHH
Confidence 579999999999876 223456889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhh-----cCCccE
Q 000069 93 WALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVEN-----ELPEKI 167 (2442)
Q Consensus 93 wSLLNFLdPeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVek-----dLP~Kv 167 (2442)
|+||.||.-..|.+...|.+|+...-.. ..+||.-+.+++||||+|..+.. .||.+.
T Consensus 510 ysLlrFLr~~pF~D~~~Wke~i~~~s~~------------------g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~ 571 (901)
T KOG4439|consen 510 YSLLRFLRCPPFGDLKQWKENIDNMSKG------------------GANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKN 571 (901)
T ss_pred HHHHHHhcCCCcchHHHHHHhccCcccc------------------chhhhhhhhhhHHhhhhHHhhccccccccCcccc
Confidence 9999999999999999999988743221 13467777899999999998865 799999
Q ss_pred EEEEeccccHHHHHHHHHHHHHhccc-----------C---C-------------------------------CCCcchH
Q 000069 168 ERLVRCEASAYQKLLMKRVEENLGSI-----------G---N-------------------------------SKGRSVH 202 (2442)
Q Consensus 168 E~VIkceMSaeQRkLYKrLeenL~Sl-----------g---s-------------------------------skgrsLl 202 (2442)
..++.++|+..+...|+-+......+ . . .....++
T Consensus 572 i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL 651 (901)
T KOG4439|consen 572 IELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHIL 651 (901)
T ss_pred eEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHH
Confidence 99999999998888887653321000 0 0 0001247
Q ss_pred HHHHHHHhhcCcccccchhhh------------h-----hhcc------------------CCC---CCCChhhhhccHH
Q 000069 203 NSVMELRNICNHPYLSQLHAE------------E-----VDTL------------------IPK---HYLPPIVRLCGKL 244 (2442)
Q Consensus 203 NiLMQLRKICNHPyLfqleeE------------E-----VEeL------------------ipe---~~l~dLIRsSGKL 244 (2442)
..+++||++|+|+.+.....+ + .+.+ .+. ..+-...+.+.|+
T Consensus 652 ~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki 731 (901)
T KOG4439|consen 652 VLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKI 731 (901)
T ss_pred HHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHH
Confidence 788999999999955321100 0 0000 000 0011234678899
Q ss_pred HHHHHHhhhh-hcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccccc
Q 000069 245 EMLDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 323 (2442)
Q Consensus 245 EaLdrLL~KL-ratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGE 323 (2442)
..+..+|..+ ...++|++|-+|++.++++++..|...|+.|..|+|.....+|+.+++.||..+...+|+|+|..|||.
T Consensus 732 ~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGV 811 (901)
T KOG4439|consen 732 AMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGV 811 (901)
T ss_pred HHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcc
Confidence 9999999887 567799999999999999999999999999999999999999999999999999889999999999999
Q ss_pred ccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhcc
Q 000069 324 GVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITA 393 (2442)
Q Consensus 324 GLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIgA 393 (2442)
||||..|+++|++|++|||+...||.+||+|+||+++|+||||++.+|+|++|...+..|++++..|+.+
T Consensus 812 GLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G 881 (901)
T KOG4439|consen 812 GLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTG 881 (901)
T ss_pred eeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999974
No 14
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-44 Score=423.94 Aligned_cols=364 Identities=29% Similarity=0.433 Sum_probs=291.5
Q ss_pred CCCcEEEEchHHHhccC---------------CcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccC
Q 000069 21 QKFNVLLTTYEYLMNKH---------------DRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPL 85 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~---------------DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPL 85 (2442)
..||||+|||..+-... .+..|..++|..||+||||.||++.|...+++..+.+.+||+|||||+
T Consensus 276 ~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPL 355 (791)
T KOG1002|consen 276 MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPL 355 (791)
T ss_pred hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcc
Confidence 47999999998874311 234577899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCh-------------------------------HHHHHHhcCccccCCCCCchhhhhHHH
Q 000069 86 QNNLEELWALLNFLLPNIFNSS-------------------------------EDFSQWFNKPFESNGDNSPDEALLSEE 134 (2442)
Q Consensus 86 QNNLeELwSLLNFLdPeIFnS~-------------------------------e~FeEwFnKPfe~~g~~s~dEaeLSEE 134 (2442)
||+..|||+|++||+-..|.-+ -.|..++-+++...+...
T Consensus 356 QNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eG--------- 426 (791)
T KOG1002|consen 356 QNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEG--------- 426 (791)
T ss_pred hhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhhhhhhhhcccccccchhhcccC---------
Confidence 9999999999999987665331 011111222332222211
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHhh--cCCccEEEEEeccccHHHHHHHHHHHHHhcc---------cCCCCCcchHH
Q 000069 135 ENLLIINRLHQVLRPFVLRRLKHKVEN--ELPEKIERLVRCEASAYQKLLMKRVEENLGS---------IGNSKGRSVHN 203 (2442)
Q Consensus 135 EkllIIkRLhKLLRPFMLRRTKKDVek--dLP~KvE~VIkceMSaeQRkLYKrLeenL~S---------lgsskgrsLlN 203 (2442)
.........|.+|..+|+||+|-.-.+ .||++...+-+--++..+..+|+.+...... .-..++..++.
T Consensus 427 pGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~ 506 (791)
T KOG1002|consen 427 PGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFT 506 (791)
T ss_pred chHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHH
Confidence 112334578899999999999865333 4899988888888888888888887543211 11234567888
Q ss_pred HHHHHHhhcCcccccchhh----------------------hhh-----------------hccC---------------
Q 000069 204 SVMELRNICNHPYLSQLHA----------------------EEV-----------------DTLI--------------- 229 (2442)
Q Consensus 204 iLMQLRKICNHPyLfqlee----------------------EEV-----------------EeLi--------------- 229 (2442)
.+.+||+.+.||+|..... +.+ ..+.
T Consensus 507 LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 507 LITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred HHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 9999999999999842100 000 0000
Q ss_pred ---CCC------------------CCChhhhhccHHHHHHHHhhhhhcCC--CeEEEEEchHHHHHHHHHHHhhcCceEE
Q 000069 230 ---PKH------------------YLPPIVRLCGKLEMLDRLLPKLKATD--HRVLFFSTMTRLLDVMEDYLTFKQYRYL 286 (2442)
Q Consensus 230 ---pe~------------------~l~dLIRsSGKLEaLdrLL~KLratG--hKVLIFSQFtdTLDILED~LrkrGIkyl 286 (2442)
..+ ..-.-|+.|.|+++|.+-|..+++++ -|.|||+||+.++|+|.-.|.+.|+..+
T Consensus 587 iDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscV 666 (791)
T KOG1002|consen 587 IDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCV 666 (791)
T ss_pred ccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEE
Confidence 000 00123677889999999998888766 4889999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEE
Q 000069 287 RLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 366 (2442)
Q Consensus 287 RLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRL 366 (2442)
.+.|+|+...|...|+.| ..+.+++|||+|..|||+.|||..|..|+++||||||+...|+++|+|||||.++|+|.||
T Consensus 667 kL~GsMs~~ardatik~F-~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf 745 (791)
T KOG1002|consen 667 KLVGSMSPAARDATIKYF-KNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRF 745 (791)
T ss_pred EeccCCChHHHHHHHHHh-ccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEe
Confidence 999999999999999999 5688999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHHhhhccC
Q 000069 367 ETVQTVEEQVRASAEHKLGVANQSITAG 394 (2442)
Q Consensus 367 ITedSVEErILERaqrKLdLinKVIgAG 394 (2442)
|.++|+|++|++.+.+|..+++..|+..
T Consensus 746 ~iEnsiE~kIieLQeKKa~mihaTi~qd 773 (791)
T KOG1002|consen 746 CIENSIEEKIIELQEKKANMIHATIGQD 773 (791)
T ss_pred ehhccHHHHHHHHHHHHhhhhhhhcCCc
Confidence 9999999999999999999999999753
No 15
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=4.6e-42 Score=413.43 Aligned_cols=363 Identities=31% Similarity=0.491 Sum_probs=291.9
Q ss_pred cccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHhhhcCCCCCChHHHHHHhcCcccc
Q 000069 41 KLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFES 120 (2442)
Q Consensus 41 ~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLNFLdPeIFnS~e~FeEwFnKPfe~ 120 (2442)
.|.+-..|+||+||+|||||.....+.+|+.+++++||.|||-|+|||+-|+|.|+.|+.|+.++....|.+.|.+|+.+
T Consensus 429 AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~N 508 (1387)
T KOG1016|consen 429 ALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKN 508 (1387)
T ss_pred HhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheeccccccchHHHHHHHhhccccC
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC--chhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEeccccHHHHHHHHHHH-HHhcccCCCC
Q 000069 121 NGDNS--PDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVE-ENLGSIGNSK 197 (2442)
Q Consensus 121 ~g~~s--~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkceMSaeQRkLYKrLe-enL~Slgssk 197 (2442)
+.... .+...+... ...-||.+|..|+-||+-.-+..-||.+.|++|.+.|+..|++||+.+. ...+.++...
T Consensus 509 GQCvDStPdDvklmry----RtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~~~ 584 (1387)
T KOG1016|consen 509 GQCVDSTPDDVKLMRY----RTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQRQLYRNFMLDAKREIAANN 584 (1387)
T ss_pred CccccCChhHHHHHHH----HHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHHHHHHHHHHHHHHhhcccc
Confidence 87543 334334433 3467999999999999999999999999999999999999999999886 3344333332
Q ss_pred Cc--chHHHHHHHHhhcCcccccchhhhh----------hhccC---------CC-------------------------
Q 000069 198 GR--SVHNSVMELRNICNHPYLSQLHAEE----------VDTLI---------PK------------------------- 231 (2442)
Q Consensus 198 gr--sLlNiLMQLRKICNHPyLfqleeEE----------VEeLi---------pe------------------------- 231 (2442)
.. +.+..+.-..||.|||.+.....+. ++... +.
T Consensus 585 ~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp 664 (1387)
T KOG1016|consen 585 DAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKP 664 (1387)
T ss_pred ccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCc
Confidence 22 4456666778899999764211110 00000 00
Q ss_pred ----------------------------CCCChhhhhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcC-
Q 000069 232 ----------------------------HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQ- 282 (2442)
Q Consensus 232 ----------------------------~~l~dLIRsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrG- 282 (2442)
.|...++..+.|+..+.+++..-...|.|+|||++....++.|+++|.++.
T Consensus 665 ~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~ 744 (1387)
T KOG1016|consen 665 RGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQI 744 (1387)
T ss_pred ccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccc
Confidence 000000112233344444444444567899999999999999999996542
Q ss_pred -----------------ceEEEEeCCCCHHHHHHHHHHHhcCCCCce-EEEeeecccccccCCcccCEEEEeCCCCCccc
Q 000069 283 -----------------YRYLRLDGHTSGGDRGALIDKFNQQDSPFF-IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQV 344 (2442)
Q Consensus 283 -----------------IkylRLDGSTS~dEReeIIDrFNapDS~i~-VFLLSTRAGGEGLNLQaADTVIIYDpPWNPar 344 (2442)
..|++++|.++..+|+++|++||.+- .+. .|||||++|..||||..|+.+|+||.-|||..
T Consensus 745 pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~-~lsWlfllstrag~lGinLIsanr~~ifda~wnpch 823 (1387)
T KOG1016|consen 745 PCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEP-GLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCH 823 (1387)
T ss_pred cCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCC-CceeeeeehhccccccceeeccceEEEEEeecCccc
Confidence 46999999999999999999998764 454 79999999999999999999999999999999
Q ss_pred cchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhccCccCCCCCHHHHHHH
Q 000069 345 DLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREY 408 (2442)
Q Consensus 345 deQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIgAGkFDnksSaEEreEL 408 (2442)
+.||..|++|+||+|+++||||+..+++|.+||+|+..|..|-.++++.-.-+..++..+.+.+
T Consensus 824 daqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~an~s~Ke~enL 887 (1387)
T KOG1016|consen 824 DAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPDANISQKELENL 887 (1387)
T ss_pred cchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCccccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987666666555544433
No 16
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=6.1e-41 Score=430.24 Aligned_cols=342 Identities=19% Similarity=0.202 Sum_probs=256.5
Q ss_pred CCcEEEEchHHHhccC-CcCcccCCCccEEEEcCCcccCCc---ccHHHHHHHhc--ccccEEEEEeccCCCCHHHHHHH
Q 000069 22 KFNVLLTTYEYLMNKH-DRPKLSKIQWHYIIIDEGHRIKNA---SCKLNADLKHY--QSSHRLLLTGTPLQNNLEELWAL 95 (2442)
Q Consensus 22 KFDVVITTYE~LrKe~-DRs~LsKIkWDLVIIDEAHRLKN~---~SKLSKALKqL--kSrrRLLLTGTPLQNNLeELwSL 95 (2442)
.++++|+||+++.++. ....+....|++|||||||+++|. .++.|+.+..+ +++++|||||||++|+..|+|++
T Consensus 247 ~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~fal 326 (956)
T PRK04914 247 TEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFAR 326 (956)
T ss_pred cCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHh
Confidence 4679999999998732 223467789999999999999963 56778888877 57899999999999999999999
Q ss_pred HhhhcCCCCCChHHHHHHhcCccc---------cCCCCCc-hhhhhHHH----------------------HHHHHHHHH
Q 000069 96 LNFLLPNIFNSSEDFSQWFNKPFE---------SNGDNSP-DEALLSEE----------------------ENLLIINRL 143 (2442)
Q Consensus 96 LNFLdPeIFnS~e~FeEwFnKPfe---------~~g~~s~-dEaeLSEE----------------------EkllIIkRL 143 (2442)
|+||+|..|.++..|...+..+.. ....... ....+... .....+..|
T Consensus 327 L~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L 406 (956)
T PRK04914 327 LRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISEL 406 (956)
T ss_pred hhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHH
Confidence 999999999999999865442111 1111000 00000000 000111111
Q ss_pred HH--hhhhhhhhhhhhHHhhcCCccEEEEEeccccHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHhhcCcccccchh
Q 000069 144 HQ--VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLH 221 (2442)
Q Consensus 144 hK--LLRPFMLRRTKKDVekdLP~KvE~VIkceMSaeQRkLYKrLeenL~SlgsskgrsLlNiLMQLRKICNHPyLfqle 221 (2442)
.. -..++|+|+++.++.. +|.+..+.+.++|....+..+... ....+++. .+|......
T Consensus 407 ~d~hg~~rvm~RntR~~v~~-fp~R~~~~~~l~~~~~y~~~~~~~-----------------~~~~~~~~-l~pe~~~~~ 467 (956)
T PRK04914 407 LDRHGTGRVLFRNTRAAVKG-FPKRELHPIPLPLPEQYQTAIKVS-----------------LEARARDM-LYPEQIYQE 467 (956)
T ss_pred HhhcCcceEEEeccHHhhcC-CCcCceeEeecCCCHHHHHHHHHh-----------------HHHHHHhh-cCHHHHHHH
Confidence 11 1236899999999864 899999999998866443333210 00112221 122110000
Q ss_pred hhhhhccCCCCCCChhhhhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHH-hhcCceEEEEeCCCCHHHHHHH
Q 000069 222 AEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL-TFKQYRYLRLDGHTSGGDRGAL 300 (2442)
Q Consensus 222 eEEVEeLipe~~l~dLIRsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~L-rkrGIkylRLDGSTS~dEReeI 300 (2442)
.. .....+..+.|+.+|.++|..+. ++|+||||++..++++|.++| ...|+++..|+|+++..+|.++
T Consensus 468 ~~---------~~~~~~~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~ 536 (956)
T PRK04914 468 FE---------DNATWWNFDPRVEWLIDFLKSHR--SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRA 536 (956)
T ss_pred Hh---------hhhhccccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHH
Confidence 00 00123445789999999998654 789999999999999999999 5679999999999999999999
Q ss_pred HHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHH
Q 000069 301 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASA 380 (2442)
Q Consensus 301 IDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERa 380 (2442)
+++|+.++..++ |||||++||+|||||.|++||+||+||||..++||+||+||+||++.|.||+++.++|+++.|++..
T Consensus 537 ~~~F~~~~~~~~-VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~ 615 (956)
T PRK04914 537 AAYFADEEDGAQ-VLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWY 615 (956)
T ss_pred HHHHhcCCCCcc-EEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHH
Confidence 999987543444 5778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccC
Q 000069 381 EHKLGVANQSITAG 394 (2442)
Q Consensus 381 qrKLdLinKVIgAG 394 (2442)
..|++++...+..+
T Consensus 616 ~~~l~ife~~~~~~ 629 (956)
T PRK04914 616 HEGLNAFEHTCPTG 629 (956)
T ss_pred hhhcCceeccCCCH
Confidence 99999999988765
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-36 Score=359.19 Aligned_cols=330 Identities=25% Similarity=0.336 Sum_probs=257.5
Q ss_pred cEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhc--ccccEEEEEeccCCCCHHHHHHHHhhhcC
Q 000069 24 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY--QSSHRLLLTGTPLQNNLEELWALLNFLLP 101 (2442)
Q Consensus 24 DVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqL--kSrrRLLLTGTPLQNNLeELwSLLNFLdP 101 (2442)
-|.|++|+.+...++ .|...+|.+||+||+|++|+..+++.+++.-+ ...|.|||||||--.++.|||.++..+++
T Consensus 288 ~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~ 365 (689)
T KOG1000|consen 288 TVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDH 365 (689)
T ss_pred eEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcc
Confidence 489999999987444 67778899999999999999999999888765 67899999999999999999999999999
Q ss_pred CCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhh-hhhhhhhhhHHhhcCCccEEEEEeccccHHHH
Q 000069 102 NIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR-PFVLRRLKHKVENELPEKIERLVRCEASAYQK 180 (2442)
Q Consensus 102 eIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLR-PFMLRRTKKDVekdLP~KvE~VIkceMSaeQR 180 (2442)
.+|.++..|...|+..-......... .-.+..+|+-+|+ .+||||+|.+|+.+||+|+..++++- ...+.
T Consensus 366 tlfp~f~efa~rYCd~k~vr~~~Dyk--------g~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~-~gr~d 436 (689)
T KOG1000|consen 366 TLFPNFHEFAIRYCDGKQVRFCFDYK--------GCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVS-GGRID 436 (689)
T ss_pred cccccHHHHHHHhcCccccceeeecC--------CCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEc-CCccc
Confidence 99999999999998643333222111 1123456777774 57999999999999999966655542 22222
Q ss_pred HHHHHHHHHhcccCCCCCcchHHHHHHHHhhcCcccccchhhhhhhccCCCCCCChhhhhccHHHHHHHHhhh----hhc
Q 000069 181 LLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPK----LKA 256 (2442)
Q Consensus 181 kLYKrLeenL~SlgsskgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~~l~dLIRsSGKLEaLdrLL~K----Lra 256 (2442)
...+.+....... ...+...+ .+.|-- ++. ....-.|+..+.++|.. ..+
T Consensus 437 a~~~~lv~~a~~~------t~~~~~e~-~~~~l~--l~y-----------------~~tgiaK~~av~eyi~~~~~l~d~ 490 (689)
T KOG1000|consen 437 ARMDDLVKAAADY------TKVNSMER-KHESLL--LFY-----------------SLTGIAKAAAVCEYILENYFLPDA 490 (689)
T ss_pred hHHHHHHHHhhhc------chhhhhhh-hhHHHH--HHH-----------------HHhcccccHHHHHHHHhCcccccC
Confidence 2222222111110 00011110 000000 000 00112255666665554 456
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEe
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIF 336 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIY 336 (2442)
.+.|+|||+++..++|-|+.++..+++.++||||+++..+|..+++.|+ .+.+++|-+++..|+|.||+|..|+.|||.
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ-~seev~VAvlsItA~gvGLt~tAa~~VVFa 569 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQ-TSEEVRVAVLSITAAGVGLTLTAASVVVFA 569 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhc-cccceEEEEEEEeecccceeeeccceEEEE
Confidence 6799999999999999999999999999999999999999999999995 466899999999999999999999999999
Q ss_pred CCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhh
Q 000069 337 DTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSI 391 (2442)
Q Consensus 337 DpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVI 391 (2442)
+++|||..++||.+|+|||||+..|.||||++++|+|+.+|..+++|+..+..+-
T Consensus 570 EL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~g 624 (689)
T KOG1000|consen 570 ELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVG 624 (689)
T ss_pred EecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999887764
No 18
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.5e-37 Score=384.04 Aligned_cols=355 Identities=31% Similarity=0.448 Sum_probs=295.4
Q ss_pred cCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHhhh
Q 000069 20 HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFL 99 (2442)
Q Consensus 20 ~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLNFL 99 (2442)
..+++||||||+.+.. ..+..+.|-+||+||||+++|..++.++++..+.+.+||.|||||+||++.|||+++.|+
T Consensus 232 l~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl 307 (674)
T KOG1001|consen 232 LNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFL 307 (674)
T ss_pred hcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHh
Confidence 4578999999999974 467779999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHH-----hhcCCccEEEEEecc
Q 000069 100 LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKV-----ENELPEKIERLVRCE 174 (2442)
Q Consensus 100 dPeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDV-----ekdLP~KvE~VIkce 174 (2442)
.-+.|.....|...+..++..... .....+++.+|+.+++||+|... ...||++...++.+.
T Consensus 308 ~~~p~~~~~~~~~~i~~p~~~~~~-------------~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~ 374 (674)
T KOG1001|consen 308 EIHPYCDQNYFKLLIQDPDERNKY-------------KEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVD 374 (674)
T ss_pred hcCCchhhHHHHHHhcChhhhhhH-------------HHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeecc
Confidence 999999999999888877654321 23467889999999999998633 236999999999999
Q ss_pred ccHHHHHHHHHHHHHhccc---------CCCCCcchHHHHHHHHhhcCcccccchhhhh--------------hhcc---
Q 000069 175 ASAYQKLLMKRVEENLGSI---------GNSKGRSVHNSVMELRNICNHPYLSQLHAEE--------------VDTL--- 228 (2442)
Q Consensus 175 MSaeQRkLYKrLeenL~Sl---------gsskgrsLlNiLMQLRKICNHPyLfqleeEE--------------VEeL--- 228 (2442)
++..++.+|+.+....... ....+..++..+.+||++|+||.+....... +..+
T Consensus 375 ~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~ 454 (674)
T KOG1001|consen 375 LSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVS 454 (674)
T ss_pred ccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHHHhhc
Confidence 9999999999886653221 1123445677788999999999874211100 0000
Q ss_pred ----CCCC----------------------------------------------CCChhhh----hccHHHHHHHHhhhh
Q 000069 229 ----IPKH----------------------------------------------YLPPIVR----LCGKLEMLDRLLPKL 254 (2442)
Q Consensus 229 ----ipe~----------------------------------------------~l~dLIR----sSGKLEaLdrLL~KL 254 (2442)
+... .....+. .+.|+..+.++|...
T Consensus 455 ~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~ 534 (674)
T KOG1001|consen 455 HWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKILQAK 534 (674)
T ss_pred cccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHHHhhc
Confidence 0000 0000001 145777777777755
Q ss_pred hcCCC-eEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEE
Q 000069 255 KATDH-RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 333 (2442)
Q Consensus 255 ratGh-KVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTV 333 (2442)
..... ++|||+|++.++++++-.|...++.+.+++|.++...|.+.+..|+ .+..+.++|+|.+||+.||||..|++|
T Consensus 535 ~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~-~~~~~~vll~Slkag~~glnlt~a~~v 613 (674)
T KOG1001|consen 535 EMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFP-CDPLVTALLMSLKAGKVGLNLTAASHV 613 (674)
T ss_pred cCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccc-cCccHHHHHHHHHHhhhhhchhhhhHH
Confidence 44444 9999999999999999999999999999999999999999999997 677889999999999999999999999
Q ss_pred EEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhc
Q 000069 334 IIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSIT 392 (2442)
Q Consensus 334 IIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIg 392 (2442)
|++|++|||..+.|||+|+|||||+++|.|++|+..+|+|++|+.++.+|+.+...+++
T Consensus 614 ~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 614 LLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFG 672 (674)
T ss_pred HhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999998887764
No 19
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=2.9e-36 Score=374.13 Aligned_cols=289 Identities=44% Similarity=0.649 Sum_probs=252.6
Q ss_pred hhhhhhcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHH
Q 000069 14 SREKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELW 93 (2442)
Q Consensus 14 SRKqIl~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELw 93 (2442)
.+++....+|+|.+++|+.+.. +...+..+.|.++|+||+||++|..+++++.+..|...+++||||||++|++.+|+
T Consensus 406 ~~~~~s~~k~~vl~~s~~~~~~--~~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~ 483 (696)
T KOG0383|consen 406 EMKTESSAKFHVLLPSYETIEI--DQSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELF 483 (696)
T ss_pred cccchhhcccccCCCchhhccc--CHHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhh
Confidence 3445566789999999999976 77789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEec
Q 000069 94 ALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRC 173 (2442)
Q Consensus 94 SLLNFLdPeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkc 173 (2442)
+||+||.|..|++...|.+.|.. ......++.||.++.|+|+||++.|+.+.+|.|.+.++.+
T Consensus 484 ~ll~flt~~~~~~~~~f~e~~~d-----------------~~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~ 546 (696)
T KOG0383|consen 484 NLLNFLTPGRFNSLEWFLEEFHD-----------------ISCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRV 546 (696)
T ss_pred hcccccCcccccchhhhhhhcch-----------------hhHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEE
Confidence 99999999999999999887753 1122357899999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHH-hcccC-CCCCcchHHHHHHHHhhcCcccccchhhhhhhccCCCCCCChhhhhccHHHHHHHHh
Q 000069 174 EASAYQKLLMKRVEEN-LGSIG-NSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLL 251 (2442)
Q Consensus 174 eMSaeQRkLYKrLeen-L~Slg-sskgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~~l~dLIRsSGKLEaLdrLL 251 (2442)
.|+..|+++|+.+... +..+. ......++|++|+|||+|+|||++........ ........+++.++|+.+|..++
T Consensus 547 ~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~--~~~~~~~~l~k~~~k~~~l~~~~ 624 (696)
T KOG0383|consen 547 ELSPCQKKYYKKILTRNWQGLLAGVHQYSLLNIVMELRKQCNHPYLSPLEEPLEE--NGEYLGSALIKASGKLTLLLKML 624 (696)
T ss_pred ecCHHHHHHHHHHHcCChHHHhhcchhHHHHHHHHHHHHhhcCcccCcccccccc--chHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988643 21111 22334678999999999999999876221111 11112356788999999999999
Q ss_pred hhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccc
Q 000069 252 PKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 324 (2442)
Q Consensus 252 ~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEG 324 (2442)
++++..|||||||+||+.++|+|+++|...+ .|.||||......|+..+++||++++.-||||+||+|||+|
T Consensus 625 ~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 625 KKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 9999999999999999999999999999999 99999999999999999999999999999999999999987
No 20
>PRK13766 Hef nuclease; Provisional
Probab=99.94 E-value=2.9e-26 Score=291.26 Aligned_cols=349 Identities=17% Similarity=0.160 Sum_probs=218.3
Q ss_pred hhcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhc---ccccEEEEEeccCCCCHHHHHH
Q 000069 18 IVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY---QSSHRLLLTGTPLQNNLEELWA 94 (2442)
Q Consensus 18 Il~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqL---kSrrRLLLTGTPLQNNLeELwS 94 (2442)
..+.+.+|+|+||+.+........+...+|++|||||||++.+..+..+..-..+ +..++++|||||..+ ...+..
T Consensus 103 ~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~ 181 (773)
T PRK13766 103 ELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKE 181 (773)
T ss_pred HHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHH
Confidence 3445689999999999875433445556799999999999987554333222222 345689999999765 566666
Q ss_pred HHhhhcCCCCCCh----HHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhc-CCccEEE
Q 000069 95 LLNFLLPNIFNSS----EDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENE-LPEKIER 169 (2442)
Q Consensus 95 LLNFLdPeIFnS~----e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekd-LP~KvE~ 169 (2442)
+++.|....+.-+ ..+..++..+.... ....+. ..+..++.+|..++.+|++...... ++.....
T Consensus 182 ~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~-----~~v~l~-----~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~ 251 (773)
T PRK13766 182 VCENLGIEHVEVRTEDDPDVKPYVHKVKIEW-----VRVELP-----EELKEIRDLLNEALKDRLKKLKELGVIVSISPD 251 (773)
T ss_pred HHHhCCceEEEEcCCCChhHHhhhccceeEE-----EEeCCc-----HHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCC
Confidence 6666543222111 12222222110000 001111 1245677888888877776544322 2222222
Q ss_pred EEeccccHHHHHHHHHHHHHhcc--------------------cCCCCCcchHHHHHHHHhhcCcccccchhhhhhhccC
Q 000069 170 LVRCEASAYQKLLMKRVEENLGS--------------------IGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLI 229 (2442)
Q Consensus 170 VIkceMSaeQRkLYKrLeenL~S--------------------lgsskgrsLlNiLMQLRKICNHPyLfqleeEEVEeLi 229 (2442)
+....+...++.+++.+...... ........+...+..++....++... .....++
T Consensus 252 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~----~~~~~l~ 327 (773)
T PRK13766 252 VSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGS----KASKRLV 327 (773)
T ss_pred cCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCc----HHHHHHH
Confidence 22333344444444333210000 00000001111111122111100000 0000000
Q ss_pred CCCC-------CChhhhhccHHHHHHHHhhhhh--cCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCC--------C
Q 000069 230 PKHY-------LPPIVRLCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH--------T 292 (2442)
Q Consensus 230 pe~~-------l~dLIRsSGKLEaLdrLL~KLr--atGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGS--------T 292 (2442)
.... ...+....+|+..|.++|..+. ..++|+||||++.+++++|.++|...|+.+.+++|. +
T Consensus 328 ~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~ 407 (773)
T PRK13766 328 EDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGM 407 (773)
T ss_pred hCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCC
Confidence 0000 0111234679999999998876 567999999999999999999999999999999996 7
Q ss_pred CHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCH
Q 000069 293 SGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 372 (2442)
Q Consensus 293 S~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSV 372 (2442)
+..+|..++++|+.+... +|++|+++++|+|++.|++||+||++||+.+++||+||++|.|+ .++|.|++.+|.
T Consensus 408 ~~~~r~~~~~~F~~g~~~---vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ 481 (773)
T PRK13766 408 SQKEQIEILDKFRAGEFN---VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTR 481 (773)
T ss_pred CHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCCh
Confidence 888999999999876433 68899999999999999999999999999999999999999876 678999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000069 373 EEQVRASAEHKLGVA 387 (2442)
Q Consensus 373 EErILERaqrKLdLi 387 (2442)
||.+|....+|.+.+
T Consensus 482 ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 482 DEAYYWSSRRKEKKM 496 (773)
T ss_pred HHHHHHHhhHHHHHH
Confidence 999988877665544
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=3.9e-24 Score=269.78 Aligned_cols=259 Identities=19% Similarity=0.250 Sum_probs=185.3
Q ss_pred CCcEEEEchHHHhccCCc--------CcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHH
Q 000069 22 KFNVLLTTYEYLMNKHDR--------PKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELW 93 (2442)
Q Consensus 22 KFDVVITTYE~LrKe~DR--------s~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELw 93 (2442)
...|+|+||+++.....+ ..|....|++||+||+|++.+. .+.+.+..+.+++||+|||||+.++ +.+
T Consensus 343 ~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~--~fr~il~~l~a~~RLGLTATP~ReD--~~~ 418 (732)
T TIGR00603 343 EAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA--MFRRVLTIVQAHCKLGLTATLVRED--DKI 418 (732)
T ss_pred CCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH--HHHHHHHhcCcCcEEEEeecCcccC--Cch
Confidence 367999999999653222 2345568999999999999653 3555677788999999999999876 334
Q ss_pred HHHhhh-cCCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEe
Q 000069 94 ALLNFL-LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVR 172 (2442)
Q Consensus 94 SLLNFL-dPeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIk 172 (2442)
..|+++ .|.+|.- .|.+ +++ ...|.+.....++
T Consensus 419 ~~L~~LiGP~vye~--~~~e---------------------------------Li~-----------~G~LA~~~~~ev~ 452 (732)
T TIGR00603 419 TDLNFLIGPKLYEA--NWME---------------------------------LQK-----------KGFIANVQCAEVW 452 (732)
T ss_pred hhhhhhcCCeeeec--CHHH---------------------------------HHh-----------CCccccceEEEEE
Confidence 444443 3333210 0000 000 1235555667899
Q ss_pred ccccHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHhhcCcccccchhhhhhhccCCCCCCChhhhhccHHHHHHHHhh
Q 000069 173 CEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLP 252 (2442)
Q Consensus 173 ceMSaeQRkLYKrLeenL~SlgsskgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~~l~dLIRsSGKLEaLdrLL~ 252 (2442)
|+|++.....|..... . .+.. + ......|+..+..++.
T Consensus 453 v~~t~~~~~~yl~~~~--------~----------~k~~-----l-------------------~~~np~K~~~~~~Li~ 490 (732)
T TIGR00603 453 CPMTPEFYREYLRENS--------R----------KRML-----L-------------------YVMNPNKFRACQFLIR 490 (732)
T ss_pred ecCCHHHHHHHHHhcc--------h----------hhhH-----H-------------------hhhChHHHHHHHHHHH
Confidence 9999865443321100 0 0000 0 0012248899999988
Q ss_pred hhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCE
Q 000069 253 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT 332 (2442)
Q Consensus 253 KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADT 332 (2442)
.....++|+||||++...++.+...| + ...|+|.++..+|.+++++|+.+. .+. +|+++++|++||||+.|++
T Consensus 491 ~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~-~i~-vLv~SkVgdeGIDlP~a~v 563 (732)
T TIGR00603 491 FHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNP-KVN-TIFLSKVGDTSIDLPEANV 563 (732)
T ss_pred HHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCC-Ccc-EEEEecccccccCCCCCCE
Confidence 76678999999999999988888877 3 345899999999999999997532 334 4566699999999999999
Q ss_pred EEEeCCCC-CccccchhhccccccCCcc-----cEEEEEEecCCCHHHHHHHH
Q 000069 333 VIIFDTDW-NPQVDLQAQARAHRIGQKR-----DVLVLRFETVQTVEEQVRAS 379 (2442)
Q Consensus 333 VIIYDpPW-NPardeQAIGRAHRIGQKK-----EVrVYRLITedSVEErILER 379 (2442)
||+++++| ++..++||+||+.|.+..+ ..++|.|++.+|.|+..-.+
T Consensus 564 vI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~ 616 (732)
T TIGR00603 564 LIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTK 616 (732)
T ss_pred EEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHH
Confidence 99999987 9999999999999998764 37899999999999876444
No 22
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.91 E-value=3.9e-24 Score=238.28 Aligned_cols=185 Identities=39% Similarity=0.697 Sum_probs=155.4
Q ss_pred hcCCCcEEEEchHHHh---ccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHH
Q 000069 19 VHQKFNVLLTTYEYLM---NKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWAL 95 (2442)
Q Consensus 19 l~qKFDVVITTYE~Lr---Ke~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSL 95 (2442)
...+++|+|+||+.+. .......+..++|++|||||+|++||..+++++++..+.+.+||+|||||++|++.|||.+
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~ 183 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSL 183 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHH
T ss_pred ccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccc
Confidence 3457899999999999 2234556888899999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEeccc
Q 000069 96 LNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEA 175 (2442)
Q Consensus 96 LNFLdPeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkceM 175 (2442)
|+||.+..+.....|.++|..+ ..........+|..+++.|++||++.++...||+..++++.++|
T Consensus 184 l~~L~~~~~~~~~~f~~~~~~~--------------~~~~~~~~~~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~l 249 (299)
T PF00176_consen 184 LRFLNPDPFSDRRSFKKWFYRP--------------DKENSYENIERLRELLSEFMIRRTKKDVEKELPPKIEHVINVEL 249 (299)
T ss_dssp HHHHCTTTCSSHHHHHHHTHHH--------------HHTHHHHHHHHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG
T ss_pred hheeeccccccchhhhhhhhhh--------------ccccccccccccccccchhhhhhhcccccccCCceEEEEEEeCC
Confidence 9999999999999999988643 12233445789999999999999999998899999999999999
Q ss_pred cHHHHHHHHHHHHHhcccCC-------CCCcchHHHHHHHHhhcCcccc
Q 000069 176 SAYQKLLMKRVEENLGSIGN-------SKGRSVHNSVMELRNICNHPYL 217 (2442)
Q Consensus 176 SaeQRkLYKrLeenL~Slgs-------skgrsLlNiLMQLRKICNHPyL 217 (2442)
++.|+.+|+.+......... .....++..+++||++|+||+|
T Consensus 250 s~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~l 298 (299)
T PF00176_consen 250 SPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPYL 298 (299)
T ss_dssp -HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-THH
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhCCccc
Confidence 99999999988766544322 1234678899999999999987
No 23
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=5.6e-22 Score=238.36 Aligned_cols=147 Identities=24% Similarity=0.291 Sum_probs=131.2
Q ss_pred hccHHHHHHHHhhhhh--cCCCeEEEEEchHHHHHHHHHHHhhcCceEE-EEeC--------CCCHHHHHHHHHHHhcCC
Q 000069 240 LCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYL-RLDG--------HTSGGDRGALIDKFNQQD 308 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLr--atGhKVLIFSQFtdTLDILED~LrkrGIkyl-RLDG--------STS~dEReeIIDrFNapD 308 (2442)
..+||+.|.++|.... ..+.|+|||++|+++++.|.++|...++... +|-| +|++.+..++|++|+.+.
T Consensus 346 ~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge 425 (542)
T COG1111 346 EHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGE 425 (542)
T ss_pred CCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCC
Confidence 4579999999998876 5568999999999999999999999887775 7766 589999999999998876
Q ss_pred CCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHH
Q 000069 309 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN 388 (2442)
Q Consensus 309 S~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLin 388 (2442)
-+ +|++|..|.||||+..+|.|||||+--++.+.+||.||.+| ++.-+||.|++++|.|+..|....+|.+.+.
T Consensus 426 ~n---VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~ 499 (542)
T COG1111 426 YN---VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMI 499 (542)
T ss_pred ce---EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHH
Confidence 55 79999999999999999999999999999999999999999 4777899999999999999999999877666
Q ss_pred hhhc
Q 000069 389 QSIT 392 (2442)
Q Consensus 389 KVIg 392 (2442)
..+.
T Consensus 500 e~i~ 503 (542)
T COG1111 500 ESIR 503 (542)
T ss_pred HHHH
Confidence 5553
No 24
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.82 E-value=2.4e-20 Score=238.45 Aligned_cols=120 Identities=32% Similarity=0.357 Sum_probs=108.2
Q ss_pred CeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCC
Q 000069 259 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT 338 (2442)
Q Consensus 259 hKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDp 338 (2442)
.|||+|+++...++.++..|...++.+.+..++ ++-...+..|. .+.|||+-+..++-|+||..|-+|++.+|
T Consensus 1222 ekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk----~I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1222 EKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFK----SIDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred ceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhcc----cceEEEEEeccCcccccHHhhhhhheecc
Confidence 479999999999999999999999998776653 35566788883 28999999999999999999999999999
Q ss_pred CCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHH
Q 000069 339 DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLG 385 (2442)
Q Consensus 339 PWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLd 385 (2442)
--||....||+||+|||||++++.||||+..+|+|+.|+.....|-.
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee 1341 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEE 1341 (1394)
T ss_pred ccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHH
Confidence 99999999999999999999999999999999999999988776643
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.76 E-value=2e-17 Score=201.10 Aligned_cols=277 Identities=18% Similarity=0.202 Sum_probs=194.6
Q ss_pred CcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhccccc-EEEEEeccCCCCHHHHHHHHhhhcC
Q 000069 23 FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSH-RLLLTGTPLQNNLEELWALLNFLLP 101 (2442)
Q Consensus 23 FDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrr-RLLLTGTPLQNNLeELwSLLNFLdP 101 (2442)
..|.|.||+++.+......+...+|++||+||+||+.... ..+.+..+...+ ||+|||||...+...+..+..++.+
T Consensus 123 ~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~--~~~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~ 200 (442)
T COG1061 123 AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS--YRRILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGP 200 (442)
T ss_pred CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH--HHHHHHhhhcccceeeeccCceeecCCchhHHHHhcCC
Confidence 4699999999988422233444589999999999987644 233344455555 9999999874432233333333322
Q ss_pred CCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHH-h-hcCCccEEEEEeccccHHH
Q 000069 102 NIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKV-E-NELPEKIERLVRCEASAYQ 179 (2442)
Q Consensus 102 eIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDV-e-kdLP~KvE~VIkceMSaeQ 179 (2442)
. ..+....+. . ..|.+.....+++.++...
T Consensus 201 ~------------------------------------------------vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~ 232 (442)
T COG1061 201 I------------------------------------------------VYEVSLKELIDEGYLAPYKYVEIKVTLTEDE 232 (442)
T ss_pred e------------------------------------------------EeecCHHHHHhCCCccceEEEEEEeccchHH
Confidence 1 111111222 2 3577788888889888888
Q ss_pred HHHHHHHHHHhcccCCCCCcchHHHHHHHHhhcCcccccchhhhhhhccCCCCCCChhhhhccHHHHHHHHhhhhhcCCC
Q 000069 180 KLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDH 259 (2442)
Q Consensus 180 RkLYKrLeenL~SlgsskgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~~l~dLIRsSGKLEaLdrLL~KLratGh 259 (2442)
...|................ .......+ ........|+..+..++.+.. .+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~-~~~ 284 (442)
T COG1061 233 EREYAKESARFRELLRARGT--LRAENEAR-------------------------RIAIASERKIAAVRGLLLKHA-RGD 284 (442)
T ss_pred HHHhhhhhhhhhhhhhhhhh--hhHHHHHH-------------------------HHhhccHHHHHHHHHHHHHhc-CCC
Confidence 88877654433221110000 00000000 011223457888888888766 789
Q ss_pred eEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCC
Q 000069 260 RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD 339 (2442)
Q Consensus 260 KVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpP 339 (2442)
+++||+.+......|...|...++ ...++|.++..+|..++++|+.++ ..+|++++++.+|+|++.++++|+..+.
T Consensus 285 ~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~---~~~lv~~~vl~EGvDiP~~~~~i~~~~t 360 (442)
T COG1061 285 KTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG---IKVLVTVKVLDEGVDIPDADVLIILRPT 360 (442)
T ss_pred cEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC---CCEEEEeeeccceecCCCCcEEEEeCCC
Confidence 999999999999999999988888 899999999999999999998765 3478899999999999999999999999
Q ss_pred CCccccchhhcccccc-CCccc--EEEEEEecCCCHHHHHHHHHH
Q 000069 340 WNPQVDLQAQARAHRI-GQKRD--VLVLRFETVQTVEEQVRASAE 381 (2442)
Q Consensus 340 WNPardeQAIGRAHRI-GQKKE--VrVYRLITedSVEErILERaq 381 (2442)
-++..++||+||+.|. ..+.. +..|-+++..+.+..+..+..
T Consensus 361 ~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 361 GSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred CcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 9999999999999994 44444 777777788887776655443
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.76 E-value=9.1e-18 Score=201.20 Aligned_cols=117 Identities=20% Similarity=0.309 Sum_probs=104.2
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|+.+|..++.. ....++|||+.....++.|..+|...++....++|.++..+|..++++|+.+... +|++|++++
T Consensus 232 k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~---vLVaTd~~~ 306 (434)
T PRK11192 232 KTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVN---VLVATDVAA 306 (434)
T ss_pred HHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCc---EEEEccccc
Confidence 66777777753 2457999999999999999999999999999999999999999999999876544 799999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEE
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVY 364 (2442)
+|||+..+++||+||+++++..|+||+||++|.|.+..+.++
T Consensus 307 ~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 307 RGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred cCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEE
Confidence 999999999999999999999999999999999987655444
No 27
>PTZ00110 helicase; Provisional
Probab=99.76 E-value=1.2e-17 Score=207.50 Aligned_cols=123 Identities=20% Similarity=0.327 Sum_probs=109.3
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|...|..+|..+...+.|+||||+....++.|...|+..++....++|+++..+|..++++|+.+... +|++|++++
T Consensus 362 k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~---ILVaTdv~~ 438 (545)
T PTZ00110 362 KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSP---IMIATDVAS 438 (545)
T ss_pred HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCc---EEEEcchhh
Confidence 66677777777666788999999999999999999999999999999999999999999999876544 799999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCC
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
+|||+..+++||+||+|+++..|+||+||++|.|.+-.+ |.|++.+
T Consensus 439 rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 439 RGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 999999999999999999999999999999999986544 5555554
No 28
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.75 E-value=7.7e-17 Score=198.24 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=109.5
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
+..++.+++..+...++++|||+..+..++.|.+.|+..|+++..++|.++.++|..+++.|+.+ ..+++|.+++.++
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~--~~~vLvaT~~~l~ 406 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGG--KGIIIVASYGVFS 406 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCC--CCeEEEEEcceec
Confidence 45566666666667788999999999999999999999999999999999999999999999754 3455555569999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcc-cEEEEEEecCC
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR-DVLVLRFETVQ 370 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKK-EVrVYRLITed 370 (2442)
+|+|++..|+||++++..+...++|++||++|.+..+ .++||.|+-.-
T Consensus 407 eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 407 TGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred cccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 9999999999999999999999999999999998865 58999998643
No 29
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.73 E-value=2.4e-16 Score=198.08 Aligned_cols=352 Identities=18% Similarity=0.174 Sum_probs=195.2
Q ss_pred hhhcCCCcEEEEchHHHhccCCcCcccC-CCccEEEEcCCcccC-Cc-ccHHHHHHHh--cccccEEEEEeccCCCCHHH
Q 000069 17 KIVHQKFNVLLTTYEYLMNKHDRPKLSK-IQWHYIIIDEGHRIK-NA-SCKLNADLKH--YQSSHRLLLTGTPLQNNLEE 91 (2442)
Q Consensus 17 qIl~qKFDVVITTYE~LrKe~DRs~LsK-IkWDLVIIDEAHRLK-N~-~SKLSKALKq--LkSrrRLLLTGTPLQNNLeE 91 (2442)
...+...+|+|.|.+.+.++........ -.|.++|||||||-. |. ++...+.+.. +...+.|+|||||= ++...
T Consensus 149 ~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~ 227 (746)
T KOG0354|consen 149 GEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQ 227 (746)
T ss_pred hhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHH
Confidence 3445567999999999999777666666 568999999999954 42 2333333322 23447899999997 66777
Q ss_pred HHHHHhhhcCCCCCC-hHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhh---------
Q 000069 92 LWALLNFLLPNIFNS-SEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVEN--------- 161 (2442)
Q Consensus 92 LwSLLNFLdPeIFnS-~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVek--------- 161 (2442)
..+.+.=|.-.+--. ......-|.. ..........+. .....+..+|..+++|+|.+-....+..
T Consensus 228 v~~~I~~L~asldvr~~ssi~~~y~~----lr~~~~i~v~~~-~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~ 302 (746)
T KOG0354|consen 228 VQNVIDNLCASLDVRTESSIKSNYEE----LREHVQIPVDLS-LCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYE 302 (746)
T ss_pred HHHHHHhhheecccchhhhhhhhHHH----HhccCcccCcHH-HhhhhhhhhHHHHHHHHHHHHHhcCcccccccccccc
Confidence 666665554431100 0000111110 000000000011 1112234566667777665433222110
Q ss_pred ---------cCCccEEEEEeccccHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHhhcCcccccc------------h
Q 000069 162 ---------ELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQ------------L 220 (2442)
Q Consensus 162 ---------dLP~KvE~VIkceMSaeQRkLYKrLeenL~SlgsskgrsLlNiLMQLRKICNHPyLfq------------l 220 (2442)
..|........| +..+....|.........+ .+.+.+..+......-.+.+ .
T Consensus 303 ~~~~~~~~~~~~~~~~~q~~~-f~~~~~~~~~~~ll~~~gi------r~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~ 375 (746)
T KOG0354|consen 303 QWVVQAEKAAAPNGPENQRNC-FYALHLRKYNLALLISDGI------RFVDALDYLEDFYEEVALKKYLKLELEARLIRN 375 (746)
T ss_pred chhhhhhhhhccCCCccchhh-HHHHHHHHHHHHHHhhcch------hhHHHHhhhhhhccccchhHHHHHHhcchhhHH
Confidence 000000000001 1111111111100000000 01222222222111111110 0
Q ss_pred hhhhhhccCCCCCCChhhhhccHHHHHHHHhhhhhc--CCCeEEEEEchHHHHHHHHHHHh---hcCceEEEEeC-----
Q 000069 221 HAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYLT---FKQYRYLRLDG----- 290 (2442)
Q Consensus 221 eeEEVEeLipe~~l~dLIRsSGKLEaLdrLL~KLra--tGhKVLIFSQFtdTLDILED~Lr---krGIkylRLDG----- 290 (2442)
.......+ .+.........+|++.|.++|..... ...|+|||+.++..++.|..+|. ..|++...+-|
T Consensus 376 ~~~~m~~~--~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~ 453 (746)
T KOG0354|consen 376 FTENMNEL--EHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKST 453 (746)
T ss_pred HHHHHHhh--hhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccc
Confidence 00000000 00001111346799999999977654 45799999999999999999986 23556556665
Q ss_pred ---CCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEe
Q 000069 291 ---HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 367 (2442)
Q Consensus 291 ---STS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLI 367 (2442)
+++..+..++|++|+++..+ +|++|..|.||||+..||.||.||.--||.+.+||+|| +| ++.-+++.|.
T Consensus 454 ~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~ 526 (746)
T KOG0354|consen 454 QSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLT 526 (746)
T ss_pred cccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEE
Confidence 67889999999999988766 89999999999999999999999999999999999999 77 4554555555
Q ss_pred cCCCHHHHHHHH-HHHHHHHHHhhhc
Q 000069 368 TVQTVEEQVRAS-AEHKLGVANQSIT 392 (2442)
Q Consensus 368 TedSVEErILER-aqrKLdLinKVIg 392 (2442)
+ ..+..-+++ ...|..+....+.
T Consensus 527 t--~~~~~~~E~~~~~~e~lm~~~i~ 550 (746)
T KOG0354|consen 527 T--GSEVIEFERNNLAKEKLMNQTIS 550 (746)
T ss_pred c--chhHHHHHHHHHhHHHHHHHHHH
Confidence 5 344444444 4445555555543
No 30
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.73 E-value=6.8e-17 Score=199.40 Aligned_cols=133 Identities=20% Similarity=0.283 Sum_probs=109.2
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhh-cCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 321 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrk-rGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAG 321 (2442)
|...|.++|........++|||+.....++.|..+|.. .++++..++|+++..+|..++++|+.+... +|++|+++
T Consensus 352 k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~---ILVaTdvl 428 (518)
T PLN00206 352 KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVP---VIVATGVL 428 (518)
T ss_pred HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCC---EEEEecHh
Confidence 45566677765554556899999999999999999974 699999999999999999999999877654 79999999
Q ss_pred ccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHH
Q 000069 322 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 382 (2442)
Q Consensus 322 GEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqr 382 (2442)
++|||+..+++||+||+|.+...|+||+||++|.|..- .++.|+..+ +..++..+..
T Consensus 429 ~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~--~~~~~~~l~~ 485 (518)
T PLN00206 429 GRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVFVNEE--DRNLFPELVA 485 (518)
T ss_pred hccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCe--EEEEEEchh--HHHHHHHHHH
Confidence 99999999999999999999999999999999999754 344455543 3334443333
No 31
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.73 E-value=6.7e-17 Score=195.59 Aligned_cols=121 Identities=21% Similarity=0.380 Sum_probs=105.4
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|+..|.++|... ...++||||.....++.+.++|...++.+..++|+++..+|..++++|+.+... +|++|++++
T Consensus 229 k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~---vLVaTdv~~ 303 (460)
T PRK11776 229 RLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCS---VLVATDVAA 303 (460)
T ss_pred HHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCc---EEEEecccc
Confidence 666777777543 356899999999999999999999999999999999999999999999876544 789999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCC
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
+|||++.+++||+||+|+++..|+||+||++|.|+.-. .|.|+..+
T Consensus 304 rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 304 RGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred cccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 99999999999999999999999999999999997644 44455443
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=6.5e-17 Score=197.06 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=97.4
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEe
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIF 336 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIY 336 (2442)
.+++.||||.....++.+..+|...|+.+..++|+++..+|..++++|..+... +|++|.++++|||+..+++||+|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~---vLVaT~~~~~GID~p~V~~VI~~ 301 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQ---VVVATVAFGMGINKPDVRFVIHY 301 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCc---EEEEechhhccCCcccceEEEEe
Confidence 466789999999999999999999999999999999999999999999866544 78999999999999999999999
Q ss_pred CCCCCccccchhhccccccCCcccEEEEE
Q 000069 337 DTDWNPQVDLQAQARAHRIGQKRDVLVLR 365 (2442)
Q Consensus 337 DpPWNPardeQAIGRAHRIGQKKEVrVYR 365 (2442)
|+|+++..|.|++||++|.|+...+.+|+
T Consensus 302 ~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~ 330 (470)
T TIGR00614 302 SLPKSMESYYQESGRAGRDGLPSECHLFY 330 (470)
T ss_pred CCCCCHHHHHhhhcCcCCCCCCceEEEEe
Confidence 99999999999999999999987766553
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.72 E-value=9.4e-17 Score=195.42 Aligned_cols=120 Identities=19% Similarity=0.285 Sum_probs=104.5
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|..+|..+|.. ....|+|||++....++.|..+|...++.+..++|.++..+|.++++.|+.++.. +|++|++++
T Consensus 322 k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~---vLvaT~~l~ 396 (475)
T PRK01297 322 KYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIR---VLVATDVAG 396 (475)
T ss_pred HHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCc---EEEEccccc
Confidence 66677777653 2357999999999999999999999999999999999999999999999876544 788999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecC
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 369 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITe 369 (2442)
+|||+..+++||+||++++...|+||+||++|.|+.-. ++.|+..
T Consensus 397 ~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~ 441 (475)
T PRK01297 397 RGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV--SISFAGE 441 (475)
T ss_pred cCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCce--EEEEecH
Confidence 99999999999999999999999999999999998654 3344443
No 34
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.72 E-value=8.2e-17 Score=192.95 Aligned_cols=120 Identities=17% Similarity=0.244 Sum_probs=106.0
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|+.+|..++... ...++|||+.....++.|..+|...|+.+..++|+++..+|..+++.|+.++.. +|++|++++
T Consensus 242 k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~---vLVaTdv~~ 316 (423)
T PRK04837 242 KMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD---ILVATDVAA 316 (423)
T ss_pred HHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCc---EEEEechhh
Confidence 677777777642 367999999999999999999999999999999999999999999999877554 799999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecC
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 369 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITe 369 (2442)
+|||++.+++||+||+|+++..|+||+||++|.|+.-.+ +.|++.
T Consensus 317 rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 317 RGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred cCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeE--EEEeCH
Confidence 999999999999999999999999999999999976543 445543
No 35
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.72 E-value=8.3e-17 Score=195.33 Aligned_cols=116 Identities=19% Similarity=0.304 Sum_probs=101.5
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|..+|..++.. ...+++|||+.....++.|..+|...++....++|+++..+|..+++.|+.+... +|++|++++
T Consensus 232 k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---iLVaTdv~~ 306 (456)
T PRK10590 232 KRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR---VLVATDIAA 306 (456)
T ss_pred HHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCc---EEEEccHHh
Confidence 44555555542 2357999999999999999999999999999999999999999999999876543 789999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEE
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 363 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrV 363 (2442)
+|||+..+++||+||+|+++..|+||+||++|.|.+-.+.+
T Consensus 307 rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 307 RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred cCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 99999999999999999999999999999999998765443
No 36
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.72 E-value=9.4e-17 Score=200.61 Aligned_cols=116 Identities=19% Similarity=0.366 Sum_probs=102.6
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|+.+|..+|.. ..+.++||||.....++.|.++|...++.+..|+|.++..+|..++++|+.+... +||+|++++
T Consensus 244 k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~---VLVaTdv~a 318 (572)
T PRK04537 244 KQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE---ILVATDVAA 318 (572)
T ss_pred HHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEehhhh
Confidence 55566666643 3467999999999999999999999999999999999999999999999876544 799999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEE
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 363 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrV 363 (2442)
+|||+..+++||+||.||++..|+||+||++|.|..-.+..
T Consensus 319 rGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 319 RGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred cCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEE
Confidence 99999999999999999999999999999999998755433
No 37
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.70 E-value=1.7e-16 Score=198.15 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=100.0
Q ss_pred HHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccc
Q 000069 245 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 324 (2442)
Q Consensus 245 EaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEG 324 (2442)
..|..+|... .+.+.||||.....++.+.++|...|+.+..+||+++.++|..++++|..+.. .+|++|.++|.|
T Consensus 213 ~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~---~vlVaT~a~~~G 287 (591)
T TIGR01389 213 KFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDV---KVMVATNAFGMG 287 (591)
T ss_pred HHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCC---cEEEEechhhcc
Confidence 3444444432 26789999999999999999999999999999999999999999999977653 379999999999
Q ss_pred cCCcccCEEEEeCCCCCccccchhhccccccCCcccEEE
Q 000069 325 VNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 363 (2442)
Q Consensus 325 LNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrV 363 (2442)
||+..+++||+||+|+|...|.|++||++|.|+...+.+
T Consensus 288 ID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 288 IDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred CcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEE
Confidence 999999999999999999999999999999997766543
No 38
>PTZ00424 helicase 45; Provisional
Probab=99.69 E-value=6.9e-16 Score=181.91 Aligned_cols=121 Identities=20% Similarity=0.350 Sum_probs=103.0
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|+..|..++... ...++||||.....++.+..+|...++.+..++|+++..+|..+++.|+.+... +|++|++++
T Consensus 254 ~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~---vLvaT~~l~ 328 (401)
T PTZ00424 254 KFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTR---VLITTDLLA 328 (401)
T ss_pred HHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC---EEEEccccc
Confidence 344444444432 356899999999999999999999999999999999999999999999876544 789999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCC
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
+|||+..+++||+||++++...+.||+||++|.|.. -.++.|++.+
T Consensus 329 ~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~ 374 (401)
T PTZ00424 329 RGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPD 374 (401)
T ss_pred CCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHH
Confidence 999999999999999999999999999999999864 3455566654
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.69 E-value=3.7e-16 Score=196.32 Aligned_cols=104 Identities=16% Similarity=0.211 Sum_probs=95.9
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEe
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIF 336 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIY 336 (2442)
.+.++||||..+..++.+..+|...|+.+..++|+++.++|..++++|..+... +|++|.+++.|||+..+++||+|
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~---VLVaT~a~~~GIDip~V~~VI~~ 311 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ---IVVATVAFGMGINKPNVRFVVHF 311 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC---EEEEechhhccCCCCCcCEEEEe
Confidence 467899999999999999999999999999999999999999999999776544 78999999999999999999999
Q ss_pred CCCCCccccchhhccccccCCcccEEE
Q 000069 337 DTDWNPQVDLQAQARAHRIGQKRDVLV 363 (2442)
Q Consensus 337 DpPWNPardeQAIGRAHRIGQKKEVrV 363 (2442)
|+|++...|.|++||++|.|....+.+
T Consensus 312 d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 312 DIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred CCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 999999999999999999997665443
No 40
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=1.8e-15 Score=185.86 Aligned_cols=118 Identities=24% Similarity=0.399 Sum_probs=108.3
Q ss_pred cHHHHHHHHhhhhh-cCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecc
Q 000069 242 GKLEMLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 320 (2442)
Q Consensus 242 GKLEaLdrLL~KLr-atGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRA 320 (2442)
.|...|..+|..+. ..+.|+||||+....++.|..+|+..+|...-|||..++.+|..+|+.|+.++.+ +|++|++
T Consensus 324 ~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~---vLVATdV 400 (519)
T KOG0331|consen 324 AKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSP---VLVATDV 400 (519)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcc---eEEEccc
Confidence 47788888888776 4567999999999999999999999999999999999999999999999887766 8999999
Q ss_pred cccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEE
Q 000069 321 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 362 (2442)
Q Consensus 321 GGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVr 362 (2442)
++.||++...++||+||+|-|...|++|+||.+|.|++-..+
T Consensus 401 AaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~ 442 (519)
T KOG0331|consen 401 AARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAI 442 (519)
T ss_pred ccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEE
Confidence 999999999999999999999999999999999988875543
No 41
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.66 E-value=5e-16 Score=153.42 Aligned_cols=120 Identities=28% Similarity=0.460 Sum_probs=110.9
Q ss_pred cHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccc
Q 000069 242 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 321 (2442)
Q Consensus 242 GKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAG 321 (2442)
.|+..+..++.++...+.++|||+.+...++.+.++|...++.+..++|+++..+|..++++|+.+. ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 5899999999887767899999999999999999999988999999999999999999999998765 4578899999
Q ss_pred ccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEE
Q 000069 322 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 322 GEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVY 364 (2442)
++|+|++.+++||+++++|++..++|++||++|.||...|++|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998777664
No 42
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.65 E-value=1.1e-14 Score=184.06 Aligned_cols=117 Identities=16% Similarity=0.251 Sum_probs=104.4
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|+..|.++|... ...++||||.....++.|..+|...|+....++|.++..+|..++++|+.+... +||+|++++
T Consensus 232 k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~---ILVATdv~a 306 (629)
T PRK11634 232 KNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD---ILIATDVAA 306 (629)
T ss_pred HHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCC---EEEEcchHh
Confidence 677788887642 346899999999999999999999999999999999999999999999876544 799999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEE
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVY 364 (2442)
.|||+..+++||+||+|+++..|+||+||++|.|..-.+.+|
T Consensus 307 rGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~ 348 (629)
T PRK11634 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 (629)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEE
Confidence 999999999999999999999999999999999976544443
No 43
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.2e-14 Score=179.84 Aligned_cols=134 Identities=23% Similarity=0.391 Sum_probs=113.3
Q ss_pred cHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccc
Q 000069 242 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 321 (2442)
Q Consensus 242 GKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAG 321 (2442)
.|+.+|..+|..... .++|||+.....++.|...|..+|+++..|||++++.+|.+.+++|+.+... +|++|+++
T Consensus 259 ~k~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~---vLVaTDva 333 (513)
T COG0513 259 EKLELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR---VLVATDVA 333 (513)
T ss_pred HHHHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCC---EEEEechh
Confidence 388888888875443 3799999999999999999999999999999999999999999999876555 79999999
Q ss_pred ccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHH
Q 000069 322 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 383 (2442)
Q Consensus 322 GEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrK 383 (2442)
++||++...++||+||+|.++..|++|+||.+|.|.+- ..+.|++. .-|...+.+..+.
T Consensus 334 aRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 334 ARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred hccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999543 45555654 2244455554444
No 44
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.60 E-value=7.3e-15 Score=191.36 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=97.1
Q ss_pred CCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeC
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFD 337 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYD 337 (2442)
+.+.||||..+..++.|..+|...|++...++|+++..+|..++++|..+... +|++|.++|.|||+...++||+||
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~---VLVATdAFGMGIDkPDVR~VIHyd 756 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEIN---IICATVAFGMGINKPDVRFVIHHS 756 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCc---EEEEechhhcCCCccCCcEEEEcC
Confidence 45789999999999999999999999999999999999999999999776544 789999999999999999999999
Q ss_pred CCCCccccchhhccccccCCcccEEEEE
Q 000069 338 TDWNPQVDLQAQARAHRIGQKRDVLVLR 365 (2442)
Q Consensus 338 pPWNPardeQAIGRAHRIGQKKEVrVYR 365 (2442)
+|.+...|.|++||++|.|+...+.+|+
T Consensus 757 lPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 757 LPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred CCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9999999999999999999987766654
No 45
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.56 E-value=4.8e-14 Score=166.64 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=111.3
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|-.+|..+|..+. |..+||||..-.+.+++.-+|+..|+....++|.+++..|...++.|.++.- -+|++|++++
T Consensus 287 K~~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r---~iLv~TDVaS 361 (476)
T KOG0330|consen 287 KDTYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGAR---SILVCTDVAS 361 (476)
T ss_pred cchhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCC---cEEEecchhc
Confidence 4557777777544 5889999999999999999999999999999999999999999999976644 4899999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHH
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 379 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILER 379 (2442)
.||+.+.+|.||+||.|-+-..|++|.||+.|.| +.-.+..|++.-.+| ++++
T Consensus 362 RGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve--~~qr 414 (476)
T KOG0330|consen 362 RGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE--LVQR 414 (476)
T ss_pred ccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH--HHHH
Confidence 9999999999999999999999999999999999 566677788774333 4444
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.55 E-value=2.8e-13 Score=176.85 Aligned_cols=108 Identities=14% Similarity=0.099 Sum_probs=92.7
Q ss_pred hcCCCeEEEEEchHHHHHHHHHHHhhc------CceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCc
Q 000069 255 KATDHRVLFFSTMTRLLDVMEDYLTFK------QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQ 328 (2442)
Q Consensus 255 ratGhKVLIFSQFtdTLDILED~Lrkr------GIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQ 328 (2442)
...++++||||+.+..++.+...|... +..+..++|+++.++|..+.++|+.+.. -+|+||+++++|||+.
T Consensus 281 i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i---~vLVaTs~Le~GIDip 357 (876)
T PRK13767 281 IKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGEL---KVVVSSTSLELGIDIG 357 (876)
T ss_pred HhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCC---eEEEECChHHhcCCCC
Confidence 344678999999999999999888652 4678899999999999999999987643 3789999999999999
Q ss_pred ccCEEEEeCCCCCccccchhhcccccc-CCcccEEEEE
Q 000069 329 AADTVIIFDTDWNPQVDLQAQARAHRI-GQKRDVLVLR 365 (2442)
Q Consensus 329 aADTVIIYDpPWNPardeQAIGRAHRI-GQKKEVrVYR 365 (2442)
..|+||+|++|.+...++||+||++|- |....-+++.
T Consensus 358 ~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 358 YIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred CCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 999999999999999999999999976 4545555554
No 47
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.55 E-value=7.7e-14 Score=167.47 Aligned_cols=295 Identities=19% Similarity=0.259 Sum_probs=190.8
Q ss_pred CCCcEEEEchHHHhccCCcC--------cccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHH
Q 000069 21 QKFNVLLTTYEYLMNKHDRP--------KLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEEL 92 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs--------~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeEL 92 (2442)
....|+||||.++.....+. +|....|.++|+||.|-+-.. .+.+.+.-..++..|+||||-+.. .|-
T Consensus 389 ~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~--MFRRVlsiv~aHcKLGLTATLvRE--DdK 464 (776)
T KOG1123|consen 389 SGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK--MFRRVLSIVQAHCKLGLTATLVRE--DDK 464 (776)
T ss_pred CCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH--HHHHHHHHHHHHhhccceeEEeec--ccc
Confidence 34569999999997543332 377789999999999997432 244444555788899999998754 344
Q ss_pred HHHHhhh-cCCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEE
Q 000069 93 WALLNFL-LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLV 171 (2442)
Q Consensus 93 wSLLNFL-dPeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VI 171 (2442)
..-|||| .|+++.. +|+. |.+ ...+....--.+
T Consensus 465 I~DLNFLIGPKlYEA-----nWmd---------------------------L~~--------------kGhIA~VqCaEV 498 (776)
T KOG1123|consen 465 ITDLNFLIGPKLYEA-----NWMD---------------------------LQK--------------KGHIAKVQCAEV 498 (776)
T ss_pred ccccceeecchhhhc-----cHHH---------------------------HHh--------------CCceeEEeeeee
Confidence 4456665 4444321 1110 000 011233344578
Q ss_pred eccccHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHhhcCcccccchhhhhhhccCCCCCCChhhhhccHHHHHHHHh
Q 000069 172 RCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLL 251 (2442)
Q Consensus 172 kceMSaeQRkLYKrLeenL~SlgsskgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~~l~dLIRsSGKLEaLdrLL 251 (2442)
+|+|+..-..-|-+... ..+.++ .+-...||+...=++
T Consensus 499 WCpMt~eFy~eYL~~~t--------~kr~lL----------------------------------yvMNP~KFraCqfLI 536 (776)
T KOG1123|consen 499 WCPMTPEFYREYLRENT--------RKRMLL----------------------------------YVMNPNKFRACQFLI 536 (776)
T ss_pred ecCCCHHHHHHHHhhhh--------hhhhee----------------------------------eecCcchhHHHHHHH
Confidence 99999754433332100 000000 001123888888888
Q ss_pred hhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccC
Q 000069 252 PKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAAD 331 (2442)
Q Consensus 252 ~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaAD 331 (2442)
+.+..+|+|+|||+...-.+....-.| |-. .|+|.|++.+|.++++.|.. +..+..|++| .+|...|+|+.|+
T Consensus 537 ~~HE~RgDKiIVFsDnvfALk~YAikl---~Kp--fIYG~Tsq~ERm~ILqnFq~-n~~vNTIFlS-KVgDtSiDLPEAn 609 (776)
T KOG1123|consen 537 KFHERRGDKIIVFSDNVFALKEYAIKL---GKP--FIYGPTSQNERMKILQNFQT-NPKVNTIFLS-KVGDTSIDLPEAN 609 (776)
T ss_pred HHHHhcCCeEEEEeccHHHHHHHHHHc---CCc--eEECCCchhHHHHHHHhccc-CCccceEEEe-eccCccccCCccc
Confidence 888889999999998766554443333 333 58899999999999999954 4556666776 8999999999999
Q ss_pred EEEEeCCCCC-ccccchhhccccccCCcc----cEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhccC------ccC---
Q 000069 332 TVIIFDTDWN-PQVDLQAQARAHRIGQKR----DVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG------FFD--- 397 (2442)
Q Consensus 332 TVIIYDpPWN-PardeQAIGRAHRIGQKK----EVrVYRLITedSVEErILERaqrKLdLinKVIgAG------kFD--- 397 (2442)
.+|-+..++- -.+..||.||+.|.-..+ .++.|.|+..+|.|.. -...+.+-++++-..-. ..+
T Consensus 610 vLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~--YStKRQ~FLidQGYsfkVit~L~gme~~~ 687 (776)
T KOG1123|consen 610 VLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY--YSTKRQQFLIDQGYSFKVITNLPGMENLE 687 (776)
T ss_pred EEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH--hhhhhhhhhhhcCceEEEeecCCCcCcCc
Confidence 9999998875 567899999999976432 3889999999998843 33333333444322111 011
Q ss_pred --CCCCHHHHHHHHHHHHHHH
Q 000069 398 --NNTSAEDRREYLESLLREC 416 (2442)
Q Consensus 398 --nksSaEEreELLEsLLEe~ 416 (2442)
...+.+++.++|+..|-..
T Consensus 688 ~l~y~skeeq~~LLq~Vl~a~ 708 (776)
T KOG1123|consen 688 DLAYASKEEQLELLQKVLLAS 708 (776)
T ss_pred ccccCCHHHHHHHHHHHHhcc
Confidence 1235677777777776653
No 48
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.54 E-value=1.2e-13 Score=161.32 Aligned_cols=134 Identities=14% Similarity=0.219 Sum_probs=102.9
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCc--eEEEEeCCCCHHHHHHH----HHHHhcCCCCceEEEe
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQY--RYLRLDGHTSGGDRGAL----IDKFNQQDSPFFIFLL 316 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGI--kylRLDGSTS~dEReeI----IDrFNapDS~i~VFLL 316 (2442)
|...+.+++..+ ..+.++|||++....++.+..+|+..+. .+..++|.++..+|.+. ++.|..+.. .+|+
T Consensus 208 ~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~---~ilv 283 (358)
T TIGR01587 208 EISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEK---FVIV 283 (358)
T ss_pred CHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCC---eEEE
Confidence 455666666433 3578999999999999999999987765 58999999999999764 888965433 4799
Q ss_pred eecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcc----cEEEEEEecCC---CHHHHHHHHHHHH
Q 000069 317 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR----DVLVLRFETVQ---TVEEQVRASAEHK 383 (2442)
Q Consensus 317 STRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKK----EVrVYRLITed---SVEErILERaqrK 383 (2442)
+|++++.|||+ .+++||+++.+ +..++||+||++|.|.+. .|+||+....+ ..+..++++-.++
T Consensus 284 aT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~ 354 (358)
T TIGR01587 284 ATQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQK 354 (358)
T ss_pred ECcchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHH
Confidence 99999999999 58999998766 788999999999999764 46666655444 3344455554444
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.51 E-value=3.3e-13 Score=173.51 Aligned_cols=127 Identities=18% Similarity=0.131 Sum_probs=104.7
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhc--------CceEEEEeCCCCHHHHHHHHHHHhcCCCCceEE
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--------QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 314 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrkr--------GIkylRLDGSTS~dEReeIIDrFNapDS~i~VF 314 (2442)
|..+|..++. .+.++|||++.+..++.|..+|+.. +.++..++|++..++|.++.++|..+.-. +
T Consensus 260 ~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~---v 332 (742)
T TIGR03817 260 AADLLADLVA----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELL---G 332 (742)
T ss_pred HHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCce---E
Confidence 4455555554 4689999999999999999888653 56778899999999999999999776443 7
Q ss_pred EeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHH
Q 000069 315 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 378 (2442)
Q Consensus 315 LLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILE 378 (2442)
|++|+++++|||+...|+||+||.|-+...++||+||++|.|+... ++.++..+..|..++.
T Consensus 333 LVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 333 VATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred EEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 9999999999999999999999999999999999999999987643 4455665667765443
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.48 E-value=5.6e-13 Score=174.28 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=93.3
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEE
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 334 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~Lrkr--GIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVI 334 (2442)
.+.+++|||+....++.+.+.|+.. ++++..+||.++..+|.+++++|..+... +|+||++++.|||++.+++||
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~---ILVaT~iie~GIDIp~v~~VI 735 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQ---VLVCTTIIETGIDIPNANTII 735 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcccccccCCEEE
Confidence 4679999999999999999999874 78999999999999999999999877655 799999999999999999999
Q ss_pred EeCCC-CCccccchhhccccccCCcccEEEEEEecC
Q 000069 335 IFDTD-WNPQVDLQAQARAHRIGQKRDVLVLRFETV 369 (2442)
Q Consensus 335 IYDpP-WNPardeQAIGRAHRIGQKKEVrVYRLITe 369 (2442)
+++.+ +....+.|++||++|-|.+- ++|.|+..
T Consensus 736 i~~a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 736 IERADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred EecCCCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 99986 45668899999999988654 44445543
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.48 E-value=8.4e-13 Score=167.06 Aligned_cols=106 Identities=17% Similarity=0.270 Sum_probs=84.3
Q ss_pred cCCCeEEEEEchH--------HHHHHHHHHHhh--cCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccccccc
Q 000069 256 ATDHRVLFFSTMT--------RLLDVMEDYLTF--KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGV 325 (2442)
Q Consensus 256 atGhKVLIFSQFt--------dTLDILED~Lrk--rGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGL 325 (2442)
..+++++|||... ..+..+.+.|.. .++++..++|.++..+|..++++|.++... +|++|+++++||
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~---ILVaT~vie~Gv 522 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVD---ILVATTVIEVGV 522 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC---EEEECceeecCc
Confidence 3466777776543 234445555543 478899999999999999999999876554 799999999999
Q ss_pred CCcccCEEEEeCCCC-CccccchhhccccccCCcccEEEE
Q 000069 326 NLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 326 NLQaADTVIIYDpPW-NPardeQAIGRAHRIGQKKEVrVY 364 (2442)
|+..+++||+||.+. +-..+.|+.||++|-|....+.++
T Consensus 523 DiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~ 562 (630)
T TIGR00643 523 DVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLV 562 (630)
T ss_pred ccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEE
Confidence 999999999999985 678899999999999876555444
No 52
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=4.6e-13 Score=153.58 Aligned_cols=232 Identities=17% Similarity=0.263 Sum_probs=171.3
Q ss_pred hhhcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCC--cccHHHHHHHhcc-cccEEEEEeccCCCCHHHHH
Q 000069 17 KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN--ASCKLNADLKHYQ-SSHRLLLTGTPLQNNLEELW 93 (2442)
Q Consensus 17 qIl~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN--~~SKLSKALKqLk-SrrRLLLTGTPLQNNLeELw 93 (2442)
+.+...-+|+.-|+..+.+...+..|.-...+++|+|||..|.| ...+.|..++.+. ....+++|||- ..|+.
T Consensus 140 kkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eil 215 (400)
T KOG0328|consen 140 KKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEIL 215 (400)
T ss_pred hhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHH
Confidence 33445568999999999887788888888999999999999876 4556788888775 67889999993 33444
Q ss_pred HHHhhhcCCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEe-
Q 000069 94 ALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVR- 172 (2442)
Q Consensus 94 SLLNFLdPeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIk- 172 (2442)
.+.+++.++. ....++
T Consensus 216 emt~kfmtdp---------------------------------------------------------------vrilvkr 232 (400)
T KOG0328|consen 216 EMTEKFMTDP---------------------------------------------------------------VRILVKR 232 (400)
T ss_pred HHHHHhcCCc---------------------------------------------------------------eeEEEec
Confidence 4433332221 111110
Q ss_pred ccccHH-HHHHHHHHHHHhcccCCCCCcchHHHHHHHHhhcCcccccchhhhhhhccCCCCCCChhhhhccHHHHHHHHh
Q 000069 173 CEASAY-QKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLL 251 (2442)
Q Consensus 173 ceMSae-QRkLYKrLeenL~SlgsskgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~~l~dLIRsSGKLEaLdrLL 251 (2442)
-+++.+ -+++|-. ...++ =|+..|.++.
T Consensus 233 deltlEgIKqf~v~----------------------------------ve~Ee-----------------wKfdtLcdLY 261 (400)
T KOG0328|consen 233 DELTLEGIKQFFVA----------------------------------VEKEE-----------------WKFDTLCDLY 261 (400)
T ss_pred CCCchhhhhhheee----------------------------------echhh-----------------hhHhHHHHHh
Confidence 011110 0000000 00011 0566666666
Q ss_pred hhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccC
Q 000069 252 PKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAAD 331 (2442)
Q Consensus 252 ~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaAD 331 (2442)
..+- -.+.+|||+....++||.+.|+..++.+..++|.+..++|.++++.|+.+.+. +||+|++-+.||+.|..+
T Consensus 262 d~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Sr---vLitTDVwaRGiDv~qVs 336 (400)
T KOG0328|consen 262 DTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSR---VLITTDVWARGIDVQQVS 336 (400)
T ss_pred hhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCce---EEEEechhhccCCcceeE
Confidence 5443 35789999999999999999999999999999999999999999999988776 899999999999999999
Q ss_pred EEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHH
Q 000069 332 TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 373 (2442)
Q Consensus 332 TVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVE 373 (2442)
.||+||+|-|...|++||||.+|+|.+- ...+|+..+.++
T Consensus 337 lviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d~~ 376 (400)
T KOG0328|consen 337 LVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDDLR 376 (400)
T ss_pred EEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHHHH
Confidence 9999999999999999999999999764 456777665443
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.46 E-value=9e-13 Score=175.38 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=90.8
Q ss_pred CCeEEEEEchHHHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEE
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 335 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~Lrkr--GIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVII 335 (2442)
+++++||++....++.+.++|... ++++..+||.++..+|.+++.+|..+... +|++|++++.|||+..+++||+
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~---VLVaTdIierGIDIP~v~~VIi 885 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVCTTIIETGIDIPTANTIII 885 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCC---EEEECchhhcccccccCCEEEE
Confidence 678999999999999999999876 78999999999999999999999877655 7999999999999999999998
Q ss_pred eCCC-CCccccchhhccccccCCcccEE
Q 000069 336 FDTD-WNPQVDLQAQARAHRIGQKRDVL 362 (2442)
Q Consensus 336 YDpP-WNPardeQAIGRAHRIGQKKEVr 362 (2442)
++.+ |+...+.|++||++|.|.+..++
T Consensus 886 ~~ad~fglaq~~Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 886 ERADHFGLAQLHQLRGRVGRSHHQAYAW 913 (1147)
T ss_pred ecCCCCCHHHHHHHhhccCCCCCceEEE
Confidence 8775 67778999999999998865444
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.45 E-value=2.4e-12 Score=164.34 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=85.0
Q ss_pred hcCCCeEEEEEchH--------HHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccc
Q 000069 255 KATDHRVLFFSTMT--------RLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 324 (2442)
Q Consensus 255 ratGhKVLIFSQFt--------dTLDILED~Lrkr--GIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEG 324 (2442)
...+++++|||... ..+..+.+.|... ++++..+||.++..+|..++++|..+... +|++|+++++|
T Consensus 468 ~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~---ILVaT~vie~G 544 (681)
T PRK10917 468 IAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEID---ILVATTVIEVG 544 (681)
T ss_pred HHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC---EEEECcceeeC
Confidence 35678888888643 2234455555443 57899999999999999999999876544 79999999999
Q ss_pred cCCcccCEEEEeCCCC-CccccchhhccccccCCcccEEE
Q 000069 325 VNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDVLV 363 (2442)
Q Consensus 325 LNLQaADTVIIYDpPW-NPardeQAIGRAHRIGQKKEVrV 363 (2442)
||+..+++||+||++. ....+.|+.||++|-|....|.+
T Consensus 545 iDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il 584 (681)
T PRK10917 545 VDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVL 584 (681)
T ss_pred cccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEE
Confidence 9999999999999985 56889999999999987654443
No 55
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.44 E-value=1.1e-13 Score=129.65 Aligned_cols=78 Identities=31% Similarity=0.539 Sum_probs=73.6
Q ss_pred HHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhcccccc
Q 000069 276 DYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI 355 (2442)
Q Consensus 276 D~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRI 355 (2442)
.+|+..++++..++|.++..+|..+++.|+.+.. .+|++|.++++||||+.+++||+|+++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI---RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS---SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc---eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 3688999999999999999999999999988765 3788999999999999999999999999999999999999999
Q ss_pred C
Q 000069 356 G 356 (2442)
Q Consensus 356 G 356 (2442)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 56
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.42 E-value=2.8e-12 Score=155.60 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=110.2
Q ss_pred hhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeee
Q 000069 239 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 318 (2442)
Q Consensus 239 RsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLST 318 (2442)
..+.|+..|..+|... ....+|||.+....++.|.+.|.+.||++++|||+-++++|+.+|..|+.+..+ ||++|
T Consensus 500 ~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~d---IlVaT 574 (673)
T KOG0333|consen 500 SEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGD---ILVAT 574 (673)
T ss_pred cchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCC---EEEEe
Confidence 4566899999999865 467899999999999999999999999999999999999999999999887666 89999
Q ss_pred cccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEE
Q 000069 319 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 363 (2442)
Q Consensus 319 RAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrV 363 (2442)
+++|.||++++..+||+||..-+-..|.+||||.+|-|+.-.+.-
T Consensus 575 DvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiS 619 (673)
T KOG0333|consen 575 DVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAIS 619 (673)
T ss_pred cccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEE
Confidence 999999999999999999999999999999999999999765443
No 57
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.42 E-value=9.6e-12 Score=150.58 Aligned_cols=125 Identities=16% Similarity=0.247 Sum_probs=104.9
Q ss_pred HHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccccccc
Q 000069 246 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGV 325 (2442)
Q Consensus 246 aLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGL 325 (2442)
+|..++.++. .+++|||.+....++.|.-.|-..|+++.-++|+.++.+|.+.+++|.+..-+ +||+|++++.||
T Consensus 416 ~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid---vLiaTDvAsRGL 490 (691)
T KOG0338|consen 416 MLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID---VLIATDVASRGL 490 (691)
T ss_pred HHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC---EEEEechhhccC
Confidence 3444444433 56899999999999999999999999999999999999999999999877655 799999999999
Q ss_pred CCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHH
Q 000069 326 NLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 379 (2442)
Q Consensus 326 NLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILER 379 (2442)
++...-+||+|+.|-.-..|++|.||..|-|.. -+-+.|+.++ |..|+.-
T Consensus 491 DI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRa--GrsVtlvgE~--dRkllK~ 540 (691)
T KOG0338|consen 491 DIEGVQTVINYAMPKTIEHYLHRVGRTARAGRA--GRSVTLVGES--DRKLLKE 540 (691)
T ss_pred CccceeEEEeccCchhHHHHHHHhhhhhhcccC--cceEEEeccc--cHHHHHH
Confidence 999999999999999999999999999999864 2333455555 5555544
No 58
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.42 E-value=7e-12 Score=168.87 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=83.8
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhcC---------------------------------ceEEEEeCCCCHHHHHHHHHH
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFKQ---------------------------------YRYLRLDGHTSGGDRGALIDK 303 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~LrkrG---------------------------------IkylRLDGSTS~dEReeIIDr 303 (2442)
.++++|||++.+..++.|...|+... +....+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 36789999999999999988886431 114567899999999999999
Q ss_pred HhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhcccccc
Q 000069 304 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI 355 (2442)
Q Consensus 304 FNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRI 355 (2442)
|+++.-. +|++|++++.|||+...|.||+|+.|.+...++||+||++|.
T Consensus 323 fK~G~Lr---vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGELR---CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCce---EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9876543 789999999999999999999999999999999999999885
No 59
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.40 E-value=1.8e-12 Score=162.04 Aligned_cols=227 Identities=19% Similarity=0.237 Sum_probs=168.6
Q ss_pred hhhhcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCc-------ccHHHHHHHhcccccEEEEEeccCCCC
Q 000069 16 EKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA-------SCKLNADLKHYQSSHRLLLTGTPLQNN 88 (2442)
Q Consensus 16 KqIl~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~-------~SKLSKALKqLkSrrRLLLTGTPLQNN 88 (2442)
..+..+.++++..++|.+....-...|...+..+++|||||.+..+ +.++......|...-+++||||--.--
T Consensus 101 ~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v 180 (590)
T COG0514 101 NQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRV 180 (590)
T ss_pred HHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHH
Confidence 3445567899999999999877777788889999999999997654 344455555566668899999976666
Q ss_pred HHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEE
Q 000069 89 LEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIE 168 (2442)
Q Consensus 89 LeELwSLLNFLdPeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE 168 (2442)
..|+..+|++-.+..|.. -|.+| .
T Consensus 181 ~~DI~~~L~l~~~~~~~~------sfdRp-----------------------------------------------N--- 204 (590)
T COG0514 181 RDDIREQLGLQDANIFRG------SFDRP-----------------------------------------------N--- 204 (590)
T ss_pred HHHHHHHhcCCCcceEEe------cCCCc-----------------------------------------------h---
Confidence 777777776554433211 01100 0
Q ss_pred EEEeccccHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHhhcCcccccchhhhhhhccCCCCCCChhhhhccHHHHHH
Q 000069 169 RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLD 248 (2442)
Q Consensus 169 ~VIkceMSaeQRkLYKrLeenL~SlgsskgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~~l~dLIRsSGKLEaLd 248 (2442)
+|-.+.... ..-.|+.+|.
T Consensus 205 -------------i~~~v~~~~------------------------------------------------~~~~q~~fi~ 223 (590)
T COG0514 205 -------------LALKVVEKG------------------------------------------------EPSDQLAFLA 223 (590)
T ss_pred -------------hhhhhhhcc------------------------------------------------cHHHHHHHHH
Confidence 000000000 0000122222
Q ss_pred HHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCc
Q 000069 249 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQ 328 (2442)
Q Consensus 249 rLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQ 328 (2442)
. .....+..-||||..+..++.|.++|...|++...+||++..++|..+.++|+..+.. ++++|-|.|.|||-.
T Consensus 224 ~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~---iiVAT~AFGMGIdKp 297 (590)
T COG0514 224 T---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK---VMVATNAFGMGIDKP 297 (590)
T ss_pred h---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc---EEEEeccccCccCCC
Confidence 2 1223345689999999999999999999999999999999999999999999876655 799999999999999
Q ss_pred ccCEEEEeCCCCCccccchhhccccccCCcccEEEEE
Q 000069 329 AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 365 (2442)
Q Consensus 329 aADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYR 365 (2442)
+...|||||+|-+...|.|-+||++|-|...++.+++
T Consensus 298 dVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~ 334 (590)
T COG0514 298 DVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLY 334 (590)
T ss_pred CceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEee
Confidence 9999999999999999999999999999988876554
No 60
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.39 E-value=4.9e-12 Score=153.95 Aligned_cols=135 Identities=18% Similarity=0.240 Sum_probs=114.9
Q ss_pred cHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhh--cCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 242 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF--KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 242 GKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrk--rGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
.|+.+|..+|..+. ..|.|||...-..+.+++..|.+ -|+..+.++|.+++..|..+.++|... -.++|+||+
T Consensus 299 ~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~---~~~vLF~TD 373 (758)
T KOG0343|consen 299 DKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK---RAVVLFCTD 373 (758)
T ss_pred hHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh---cceEEEeeh
Confidence 37888888887654 56899999999999999888854 389999999999999999999999764 346899999
Q ss_pred ccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHH
Q 000069 320 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 384 (2442)
Q Consensus 320 AGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKL 384 (2442)
.++.||++...|.||-||-|-+-..|++|.||..|++..-+..+|.. -+-+|.++.+++.|.
T Consensus 374 v~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~---psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 374 VAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT---PSEEEAMLKKLQKKK 435 (758)
T ss_pred hhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc---chhHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999988777655533 344678888877764
No 61
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.35 E-value=2.5e-11 Score=161.55 Aligned_cols=106 Identities=14% Similarity=0.233 Sum_probs=88.3
Q ss_pred CCeEEEEEchHHHHHHHHHHHhhc------Cc---eEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCc
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTFK------QY---RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQ 328 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~Lrkr------GI---kylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQ 328 (2442)
+.|.||||.....++.|.++|... ++ .+..++|.++ ++..++++|..+ ....||++++.+.+|+|.+
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~--~~p~IlVsvdmL~TG~DvP 773 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNE--RLPNIVVTVDLLTTGIDVP 773 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCC--CCCeEEEEecccccCCCcc
Confidence 479999999999988888777542 22 3467899886 678899999653 3447899999999999999
Q ss_pred ccCEEEEeCCCCCccccchhhccccccCC---cccEEEEEEe
Q 000069 329 AADTVIIFDTDWNPQVDLQAQARAHRIGQ---KRDVLVLRFE 367 (2442)
Q Consensus 329 aADTVIIYDpPWNPardeQAIGRAHRIGQ---KKEVrVYRLI 367 (2442)
.+++||++++.-+...++|++||+.|+.- |....||.++
T Consensus 774 ~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 774 SICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred cccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 99999999999999999999999999865 5558888775
No 62
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.34 E-value=1.9e-12 Score=118.61 Aligned_cols=81 Identities=30% Similarity=0.490 Sum_probs=75.4
Q ss_pred HHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccc
Q 000069 273 VMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARA 352 (2442)
Q Consensus 273 ILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRA 352 (2442)
.|.++|...++.+..++|.++..+|..+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 5678888889999999999999999999999987654 6889999999999999999999999999999999999999
Q ss_pred cccC
Q 000069 353 HRIG 356 (2442)
Q Consensus 353 HRIG 356 (2442)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 63
>PRK02362 ski2-like helicase; Provisional
Probab=99.32 E-value=4.9e-11 Score=153.49 Aligned_cols=110 Identities=17% Similarity=0.078 Sum_probs=87.0
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhc------------------------------------CceEEEEeCCCCHHHHHHH
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFK------------------------------------QYRYLRLDGHTSGGDRGAL 300 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~Lrkr------------------------------------GIkylRLDGSTS~dEReeI 300 (2442)
.++++|||+..+.....+...|... ...+..++|+++..+|..+
T Consensus 242 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 242 EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHH
Confidence 5789999999888766665555321 1357788999999999999
Q ss_pred HHHHhcCCCCceEEEeeecccccccCCcccCEEEE----eC-----CCCCccccchhhccccccCCcccEEEEEEecC
Q 000069 301 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD-----TDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 369 (2442)
Q Consensus 301 IDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVII----YD-----pPWNPardeQAIGRAHRIGQKKEVrVYRLITe 369 (2442)
.+.|+.+.- -+|++|+.++.|+||+..++||. || .+.+...+.|++||++|.|....-.++.++..
T Consensus 322 e~~Fr~G~i---~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 322 EDAFRDRLI---KVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred HHHHHcCCC---eEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 999987643 37999999999999999888876 77 56788899999999999998755445555543
No 64
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.31 E-value=1.9e-11 Score=143.96 Aligned_cols=122 Identities=18% Similarity=0.298 Sum_probs=109.2
Q ss_pred hccHHHHHHHHhhhhhc-CCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeee
Q 000069 240 LCGKLEMLDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 318 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLra-tGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLST 318 (2442)
...|-.+|..+|..+.. ....++||.+.+.+..+|...|+..++++..+|+-+++.+|...+.+|+.+... +||+|
T Consensus 235 ~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~---iliaT 311 (442)
T KOG0340|consen 235 IDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAAR---ILIAT 311 (442)
T ss_pred hhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCcc---EEEEe
Confidence 34577889999988876 567899999999999999999999999999999999999999999999776444 79999
Q ss_pred cccccccCCcccCEEEEeCCCCCccccchhhccccccCCccc-EEEE
Q 000069 319 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD-VLVL 364 (2442)
Q Consensus 319 RAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKE-VrVY 364 (2442)
++++.||+++..+.||+||.|..|..|++|.||..|-|..-. +-|+
T Consensus 312 DVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSiv 358 (442)
T KOG0340|consen 312 DVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIV 358 (442)
T ss_pred chhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEe
Confidence 999999999999999999999999999999999999988754 4343
No 65
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.31 E-value=2.2e-11 Score=147.63 Aligned_cols=114 Identities=17% Similarity=0.322 Sum_probs=104.1
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
+|-+|..+|++.... .|||||+..-.+..++.+.|++..+.+..|||..++..|..+..+|.+.++. ||+||++++
T Consensus 316 ~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg---IL~cTDVaA 391 (543)
T KOG0342|consen 316 RFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG---ILVCTDVAA 391 (543)
T ss_pred hHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc---eEEecchhh
Confidence 567778888776543 8999999999999999999999999999999999999999999999887665 899999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCccc
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 360 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKE 360 (2442)
+|+|++..|.||-||+|-+|..|++|+||..|-|-+-+
T Consensus 392 RGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 392 RGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred ccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 99999999999999999999999999999999776544
No 66
>PRK00254 ski2-like helicase; Provisional
Probab=99.28 E-value=9.2e-11 Score=150.64 Aligned_cols=84 Identities=17% Similarity=0.032 Sum_probs=65.4
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEE-------eCCCCC-ccccchhhcccccc
Q 000069 284 RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII-------FDTDWN-PQVDLQAQARAHRI 355 (2442)
Q Consensus 284 kylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVII-------YDpPWN-PardeQAIGRAHRI 355 (2442)
.+..++|+++.++|..+.+.|+.+.-. +|++|++++.|+|++..+.||. |+.++- ...+.|++||++|.
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~G~i~---VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~ 373 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFREGLIK---VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRP 373 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHCCCCe---EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCC
Confidence 578899999999999999999876433 7999999999999998887774 333332 34679999999999
Q ss_pred CCcccEEEEEEecCC
Q 000069 356 GQKRDVLVLRFETVQ 370 (2442)
Q Consensus 356 GQKKEVrVYRLITed 370 (2442)
|..+.-.++.++..+
T Consensus 374 ~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 374 KYDEVGEAIIVATTE 388 (720)
T ss_pred CcCCCceEEEEecCc
Confidence 876655555555543
No 67
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.27 E-value=9.1e-11 Score=151.15 Aligned_cols=127 Identities=15% Similarity=0.146 Sum_probs=101.8
Q ss_pred hhhhhcCCCeEEEEEchHHHHHHHHHHHhhcC-ceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcc
Q 000069 251 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQ-YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA 329 (2442)
Q Consensus 251 L~KLratGhKVLIFSQFtdTLDILED~LrkrG-IkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQa 329 (2442)
|..+.+..+.+|||++.+.+.+.+...|++.+ ..+...||+.+.+.|...-++|.++. .+ .++||..+..||+.-.
T Consensus 246 i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~--lr-avV~TSSLELGIDiG~ 322 (814)
T COG1201 246 IAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGE--LK-AVVATSSLELGIDIGD 322 (814)
T ss_pred HHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCC--ce-EEEEccchhhccccCC
Confidence 33333444589999999999999999998877 88999999999999999999998775 44 5888899999999999
Q ss_pred cCEEEEeCCCCCccccchhhccc-cccCCcccEEEEEEecCCCHHHHHHHHHHHHH
Q 000069 330 ADTVIIFDTDWNPQVDLQAQARA-HRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 384 (2442)
Q Consensus 330 ADTVIIYDpPWNPardeQAIGRA-HRIGQKKEVrVYRLITedSVEErILERaqrKL 384 (2442)
.|.||+|.+|-.-.+.+||+||+ ||+|....-+ +++.+ .++.+-.+...+.
T Consensus 323 vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~---ii~~~-r~dllE~~vi~~~ 374 (814)
T COG1201 323 IDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGI---IIAED-RDDLLECLVLADL 374 (814)
T ss_pred ceEEEEeCCcHHHHHHhHhccccccccCCcccEE---EEecC-HHHHHHHHHHHHH
Confidence 99999999999999999999999 7777654433 33444 5554444444443
No 68
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.26 E-value=7.6e-12 Score=147.55 Aligned_cols=123 Identities=20% Similarity=0.267 Sum_probs=106.9
Q ss_pred ccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecc
Q 000069 241 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 320 (2442)
Q Consensus 241 SGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRA 320 (2442)
..|+.+|.+-| .++.-.||||++-..-+|-|.+||-.+|+..+.|+|+..+++|...|+.|+.+..+ +|++|++
T Consensus 407 EaKiVylLeCL---QKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD---VLVATDV 480 (610)
T KOG0341|consen 407 EAKIVYLLECL---QKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD---VLVATDV 480 (610)
T ss_pred hhhhhhHHHHh---ccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc---eEEEecc
Confidence 34666666555 45677999999999999999999999999999999999999999999999988766 8999999
Q ss_pred cccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCC
Q 000069 321 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 371 (2442)
Q Consensus 321 GGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedS 371 (2442)
++-||+++..-+||+||.|-.-..|.+||||.+|-|.+--. ..||-+++
T Consensus 481 ASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiA--TTfINK~~ 529 (610)
T KOG0341|consen 481 ASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIA--TTFINKNQ 529 (610)
T ss_pred hhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCccee--eeeecccc
Confidence 99999999999999999999999999999999999886543 23444444
No 69
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.26 E-value=4.6e-11 Score=143.24 Aligned_cols=118 Identities=18% Similarity=0.252 Sum_probs=100.7
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec---
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR--- 319 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR--- 319 (2442)
||.+|.-+|+ ++--..|.|||.+..+..-.|.-+|+..|++.+.+.|.++..-|..+|++||++ .+-+||+|+
T Consensus 254 KflllyallK-L~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG---~YdivIAtD~s~ 329 (569)
T KOG0346|consen 254 KFLLLYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG---LYDIVIATDDSA 329 (569)
T ss_pred hHHHHHHHHH-HHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc---ceeEEEEccCcc
Confidence 7777777664 333457999999999999999999999999999999999999999999999886 444777777
Q ss_pred -----------------------c---------cccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEE
Q 000069 320 -----------------------A---------GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 320 -----------------------A---------GGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVY 364 (2442)
. .+.||+++...+||+||.|-++..|++|+||..|-|.+-.+.-|
T Consensus 330 ~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSf 406 (569)
T KOG0346|consen 330 DGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSF 406 (569)
T ss_pred chhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEE
Confidence 1 23699999999999999999999999999999998876655443
No 70
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.26 E-value=4.5e-11 Score=144.66 Aligned_cols=125 Identities=22% Similarity=0.353 Sum_probs=111.9
Q ss_pred cHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccc
Q 000069 242 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 321 (2442)
Q Consensus 242 GKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAG 321 (2442)
.|+.||.+.|..+... .+||||..-....+-|...|+.+++.+..++|++.+.+|.+.|.+|...... +|+.|+.+
T Consensus 453 ~Kl~wl~~~L~~f~S~-gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~---VlvatDva 528 (731)
T KOG0339|consen 453 KKLNWLLRHLVEFSSE-GKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP---VLVATDVA 528 (731)
T ss_pred HHHHHHHHHhhhhccC-CcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc---eEEEeeHh
Confidence 3899999988876544 4899999999999999999999999999999999999999999999876555 79999999
Q ss_pred ccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCH
Q 000069 322 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 372 (2442)
Q Consensus 322 GEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSV 372 (2442)
.+||++....+||+||.-..-..+.|||||.+|-|-+ -..|.|+|+...
T Consensus 529 argldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa 577 (731)
T KOG0339|consen 529 ARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDA 577 (731)
T ss_pred hcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhH
Confidence 9999999999999999999999999999999999987 457888886643
No 71
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.26 E-value=1.4e-10 Score=150.09 Aligned_cols=106 Identities=21% Similarity=0.355 Sum_probs=88.2
Q ss_pred cCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHH-----HHHHHHhc----CC----CCceEEEeeecccc
Q 000069 256 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRG-----ALIDKFNQ----QD----SPFFIFLLSIRAGG 322 (2442)
Q Consensus 256 atGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dERe-----eIIDrFNa----pD----S~i~VFLLSTRAGG 322 (2442)
..+.++|||++....++.|.+.|...++ ..|+|.+++.+|. .++++|.. +. .+-..|||+|++++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 3568999999999999999999998887 8999999999999 78999965 21 01135799999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCccc--EEEEEE
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD--VLVLRF 366 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKE--VrVYRL 366 (2442)
.|||+.. ++||+++.++ ..|+||+||++|.|.... ++++.+
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 9999975 9999988775 689999999999998644 444433
No 72
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.25 E-value=5.1e-11 Score=145.73 Aligned_cols=120 Identities=19% Similarity=0.277 Sum_probs=104.7
Q ss_pred HHHHHHHHhhhhhcC-------CCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEE
Q 000069 243 KLEMLDRLLPKLKAT-------DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 315 (2442)
Q Consensus 243 KLEaLdrLL~KLrat-------GhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFL 315 (2442)
|...|.++|.+.... .++++||++....++.+..+|...++.+..|+|..++.+|.+.++.|+.+... +|
T Consensus 315 kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p---vl 391 (482)
T KOG0335|consen 315 KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAP---VL 391 (482)
T ss_pred hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcc---eE
Confidence 555566666544311 25899999999999999999999999999999999999999999999877655 79
Q ss_pred eeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEE
Q 000069 316 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 365 (2442)
Q Consensus 316 LSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYR 365 (2442)
++|.++..|||+...++||+||+|-+-..|++||||.+|-|+.--.+.|.
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEe
Confidence 99999999999999999999999999999999999999999986655543
No 73
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=1.2e-09 Score=138.87 Aligned_cols=130 Identities=16% Similarity=0.171 Sum_probs=105.5
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.+|.+++..+...++.+||||......+.|...|...|+.+..|+|... +|+..+..|...... |+|+|+
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEcc
Confidence 345999999999887777889999999999999999999999999999999865 555556666433333 899999
Q ss_pred ccccccCCc---ccC-----EEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHH
Q 000069 320 AGGVGVNLQ---AAD-----TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 379 (2442)
Q Consensus 320 AGGEGLNLQ---aAD-----TVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILER 379 (2442)
.+|.|+++. ... +||+||.|-|...|.||+||++|.|..-.+..| + +.|+.++.+
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~--i---s~eD~l~~~ 592 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI--L---SLEDDLLQS 592 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE--e---chhHHHHHh
Confidence 999999998 443 999999999999999999999999976544332 2 345666554
No 74
>PRK01172 ski2-like helicase; Provisional
Probab=99.25 E-value=1.4e-10 Score=147.89 Aligned_cols=102 Identities=20% Similarity=0.143 Sum_probs=78.5
Q ss_pred hcCCCeEEEEEchHHHHHHHHHHHhhc-------------------------CceEEEEeCCCCHHHHHHHHHHHhcCCC
Q 000069 255 KATDHRVLFFSTMTRLLDVMEDYLTFK-------------------------QYRYLRLDGHTSGGDRGALIDKFNQQDS 309 (2442)
Q Consensus 255 ratGhKVLIFSQFtdTLDILED~Lrkr-------------------------GIkylRLDGSTS~dEReeIIDrFNapDS 309 (2442)
...++++|||+..+.....+...|... ...+..++|+++..+|..+.+.|+.+..
T Consensus 233 ~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i 312 (674)
T PRK01172 233 VNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYI 312 (674)
T ss_pred HhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 345678888888877776666665332 1235678999999999999999976543
Q ss_pred CceEEEeeecccccccCCcccCEEEEeCCC---------CCccccchhhccccccCCccc
Q 000069 310 PFFIFLLSIRAGGVGVNLQAADTVIIFDTD---------WNPQVDLQAQARAHRIGQKRD 360 (2442)
Q Consensus 310 ~i~VFLLSTRAGGEGLNLQaADTVIIYDpP---------WNPardeQAIGRAHRIGQKKE 360 (2442)
-+|++|+.++.|+|++. ++||++|.+ +++..+.|++||++|.|....
T Consensus 313 ---~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 368 (674)
T PRK01172 313 ---KVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQY 368 (674)
T ss_pred ---eEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCc
Confidence 37999999999999986 678887653 455677899999999997655
No 75
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.24 E-value=4.2e-11 Score=145.15 Aligned_cols=132 Identities=19% Similarity=0.277 Sum_probs=106.8
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHh----hcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeee
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 318 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lr----krGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLST 318 (2442)
|-..+..++..+ ...|+|+|+........|...|+ ..++++-.|+|+.+.+.|.+++.+|+.++.+ +|||+
T Consensus 416 kpl~~~~lI~~~--k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~---vLIcS 490 (620)
T KOG0350|consen 416 KPLAVYALITSN--KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDIN---VLICS 490 (620)
T ss_pred chHhHHHHHHHh--hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCce---EEEeh
Confidence 344555666543 36799999999998888887775 4466777799999999999999999988765 78888
Q ss_pred cccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHH
Q 000069 319 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 383 (2442)
Q Consensus 319 RAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrK 383 (2442)
+++.+||++-..+.||+||+|-.-..|++|+||..|-||.- ++|.++... |.+.|.....|
T Consensus 491 D~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~~--~~r~F~klL~~ 551 (620)
T KOG0350|consen 491 DALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDKH--EKRLFSKLLKK 551 (620)
T ss_pred hhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeeccc--cchHHHHHHHH
Confidence 99999999999999999999999999999999999999964 456666544 55555555444
No 76
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=8.6e-10 Score=142.60 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=108.4
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.+|.+.+......++++||||......+.|...|...|+.+..|+|.+...++..+...|..+ -++|+|+
T Consensus 410 ~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g-----~VlIATd 484 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG-----AVTVATN 484 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC-----eEEEEcc
Confidence 34699999999988777899999999999999999999999999999999998887777666665332 3799999
Q ss_pred ccccccCC---cccC-----EEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHH
Q 000069 320 AGGVGVNL---QAAD-----TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 379 (2442)
Q Consensus 320 AGGEGLNL---QaAD-----TVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILER 379 (2442)
.+|.|+|+ .... +||+||.|-|+..+.||+||++|.|..-....| + +.|+.++.+
T Consensus 485 mAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~--i---s~eD~l~~~ 547 (790)
T PRK09200 485 MAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFF--I---SLEDDLLKR 547 (790)
T ss_pred chhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEE--E---cchHHHHHh
Confidence 99999999 4676 999999999999999999999999987654332 2 335555544
No 77
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.20 E-value=6.4e-11 Score=140.18 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=101.9
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|+++|.++..-+ . -...||||+-..++.+|+..|...|..+..++|.+...+|..++++|+.+... +||+|.+..
T Consensus 317 K~~~l~~lyg~~-t-igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTnV~A 391 (477)
T KOG0332|consen 317 KYQALVNLYGLL-T-IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK---VLITTNVCA 391 (477)
T ss_pred HHHHHHHHHhhh-h-hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce---EEEEechhh
Confidence 667776644322 1 24679999999999999999999999999999999999999999999988766 899999999
Q ss_pred cccCCcccCEEEEeCCCC------CccccchhhccccccCCcccEEEEEEecC
Q 000069 323 VGVNLQAADTVIIFDTDW------NPQVDLQAQARAHRIGQKRDVLVLRFETV 369 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPW------NPardeQAIGRAHRIGQKKEVrVYRLITe 369 (2442)
+||+.+..+.||+||+|- .+..|++||||.+|+|.+-- .++|+-.
T Consensus 392 RGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~--a~n~v~~ 442 (477)
T KOG0332|consen 392 RGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGL--AINLVDD 442 (477)
T ss_pred cccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccce--EEEeecc
Confidence 999999999999999984 56789999999999997643 3345543
No 78
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.19 E-value=1.3e-10 Score=143.20 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=100.4
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|++.|..++..+. =...||||....-++-|..+|...|+.+..|.|.|++.+|..+++.++.- .+ .||++|+..+
T Consensus 259 klq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f--~~-rILVsTDLta 333 (980)
T KOG4284|consen 259 KLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF--RV-RILVSTDLTA 333 (980)
T ss_pred HHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc--eE-EEEEecchhh
Confidence 5666666665443 23579999999999999999999999999999999999999999998543 22 3799999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEe
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 367 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLI 367 (2442)
.||+-..+|.||++|++-+-..|.+||||++|+|.+- ..|.+++
T Consensus 334 RGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G-~aVT~~~ 377 (980)
T KOG4284|consen 334 RGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG-AAVTLLE 377 (980)
T ss_pred ccCCccccceEEecCCCcchHHHHHHhhhcccccccc-eeEEEec
Confidence 9999999999999999999999999999999999864 3344443
No 79
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.19 E-value=3.2e-11 Score=140.36 Aligned_cols=121 Identities=21% Similarity=0.312 Sum_probs=102.2
Q ss_pred cHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccc
Q 000069 242 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 321 (2442)
Q Consensus 242 GKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAG 321 (2442)
.|+--|.-++.++. -...||||+.+..+++|...+...||....++..|.++.|+++...|+.+. ++ .|++|+..
T Consensus 308 qKvhCLntLfskLq--INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~--cr-nLVctDL~ 382 (459)
T KOG0326|consen 308 QKVHCLNTLFSKLQ--INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGK--CR-NLVCTDLF 382 (459)
T ss_pred hhhhhHHHHHHHhc--ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccc--cc-eeeehhhh
Confidence 35555666665553 246899999999999999999999999999999999999999999997653 44 58888999
Q ss_pred ccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecC
Q 000069 322 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 369 (2442)
Q Consensus 322 GEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITe 369 (2442)
-.||++|+.|+||+||.+.|+..|+.||||.+|+|--- .-.+|++-
T Consensus 383 TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG--lAInLity 428 (459)
T KOG0326|consen 383 TRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG--LAINLITY 428 (459)
T ss_pred hcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc--eEEEEEeh
Confidence 99999999999999999999999999999999998643 23445543
No 80
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.18 E-value=1.3e-09 Score=140.34 Aligned_cols=118 Identities=13% Similarity=0.126 Sum_probs=102.0
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.++.+.+..+...++.+||||......+.|...|...|+.+..++|.+...+|..+...|+.+ -++|+|+
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g-----~VlIATd 480 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG-----AVTVATS 480 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC-----eEEEEcc
Confidence 44699999999988888899999999999999999999999999999999999988876666655332 3789999
Q ss_pred ccccccCCc---------ccCEEEEeCCCCCccccchhhccccccCCcccEEE
Q 000069 320 AGGVGVNLQ---------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 363 (2442)
Q Consensus 320 AGGEGLNLQ---------aADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrV 363 (2442)
.+|.|+++. ..++||+|+++-+... .||.||++|.|..-....
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~ 532 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQF 532 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEE
Confidence 999999999 7899999999977655 999999999998765443
No 81
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.17 E-value=3.9e-10 Score=137.93 Aligned_cols=98 Identities=16% Similarity=0.210 Sum_probs=91.5
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEe
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIF 336 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIY 336 (2442)
...|.||||+..+.+..|.-+|...++..+.|+..|.+.+|.+.+++|.+.. ..+||+|+++++||+++...+||+|
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~---~~VLiaTDVAARGLDIp~V~HVIHY 538 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSP---SGVLIATDVAARGLDIPGVQHVIHY 538 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCC---CeEEEeehhhhccCCCCCcceEEEe
Confidence 3568999999999999999999999999999999999999999999997643 3589999999999999999999999
Q ss_pred CCCCCccccchhhccccccCC
Q 000069 337 DTDWNPQVDLQAQARAHRIGQ 357 (2442)
Q Consensus 337 DpPWNPardeQAIGRAHRIGQ 357 (2442)
..|.....|++|-||..|.+.
T Consensus 539 qVPrtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 539 QVPRTSEIYVHRSGRTARANS 559 (731)
T ss_pred ecCCccceeEecccccccccC
Confidence 999999999999999999864
No 82
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.15 E-value=6.5e-10 Score=144.78 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=92.3
Q ss_pred CCeEEEEEchHHHHHHHHHHHhh---cCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEE
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 334 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~Lrk---rGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVI 334 (2442)
..++|||+.....++.+...|.. .++.++.++|+++.++|.++++.|..+ .+-+|++|+.++.||++..+++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G---~rkVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG---RRKVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC---CeEEEEecchHhhcccccCceEEE
Confidence 56899999999999999999976 478999999999999999999999654 344799999999999999999999
Q ss_pred EeCCC----CCccc--------------cchhhccccccCCcccEEEEEEecCCC
Q 000069 335 IFDTD----WNPQV--------------DLQAQARAHRIGQKRDVLVLRFETVQT 371 (2442)
Q Consensus 335 IYDpP----WNPar--------------deQAIGRAHRIGQKKEVrVYRLITedS 371 (2442)
.++.+ |||.. +.||.||++|. ++=.+|+|+++..
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 99976 56655 57999999997 4567888887653
No 83
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.14 E-value=5.8e-10 Score=134.98 Aligned_cols=121 Identities=18% Similarity=0.325 Sum_probs=103.8
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEee
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 317 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrkr--GIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLS 317 (2442)
..-|+..|..+|.. ...+|+|||...-..++|....|... .+.++.+||.++...|.+.+..|.+.... +|+|
T Consensus 239 a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~---vl~~ 313 (567)
T KOG0345|consen 239 ADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG---VLFC 313 (567)
T ss_pred HHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc---eEEe
Confidence 34488888888875 45689999998888888888777543 67899999999999999999999774333 7999
Q ss_pred ecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEE
Q 000069 318 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 365 (2442)
Q Consensus 318 TRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYR 365 (2442)
|++++.||++...|.||.||||-+|..+.+|.||..|.|..-...||.
T Consensus 314 TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl 361 (567)
T KOG0345|consen 314 TDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFL 361 (567)
T ss_pred ehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEe
Confidence 999999999999999999999999999999999999999876655543
No 84
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.14 E-value=6.6e-10 Score=142.32 Aligned_cols=119 Identities=16% Similarity=0.138 Sum_probs=105.5
Q ss_pred ccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecc
Q 000069 241 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 320 (2442)
Q Consensus 241 SGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRA 320 (2442)
..|+.++.+.+..+...|+.|||||......++|..+|...|+.+..|++. ..+|+..+..|..... .++|+|+.
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g---~VtIATnm 462 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKG---AVTIATNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCc---eEEEEecc
Confidence 458888888888888899999999999999999999999999999999998 6789999999954433 47999999
Q ss_pred cccccCCcc-------cCEEEEeCCCCCccccchhhccccccCCcccEEEE
Q 000069 321 GGVGVNLQA-------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 321 GGEGLNLQa-------ADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVY 364 (2442)
+|+|+++.. ..+||+++.|-|...+.|++||++|.|..-....|
T Consensus 463 AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 463 AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 999999987 66999999999999999999999999998664443
No 85
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.12 E-value=6.9e-10 Score=135.55 Aligned_cols=116 Identities=18% Similarity=0.340 Sum_probs=94.4
Q ss_pred HHHHHhhhhh--cCCCeEEEEEchHHHHHHHHHHHhh----------------------cCceEEEEeCCCCHHHHHHHH
Q 000069 246 MLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTF----------------------KQYRYLRLDGHTSGGDRGALI 301 (2442)
Q Consensus 246 aLdrLL~KLr--atGhKVLIFSQFtdTLDILED~Lrk----------------------rGIkylRLDGSTS~dEReeII 301 (2442)
.|..+|.... ....|+|||....+.++.=++.|.. .+.+|.+++|+|.+++|...+
T Consensus 411 ~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f 490 (708)
T KOG0348|consen 411 ALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVF 490 (708)
T ss_pred HHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHH
Confidence 3444444332 2356899999888888877766632 135799999999999999999
Q ss_pred HHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEE
Q 000069 302 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 302 DrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVY 364 (2442)
..|... -+.+|+||++++.||+|+..+.||-||+|+.+..|+.|+||.-|+|-+-.-..|
T Consensus 491 ~~Fs~~---~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLf 550 (708)
T KOG0348|consen 491 QEFSHS---RRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLF 550 (708)
T ss_pred Hhhccc---cceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEE
Confidence 999654 345899999999999999999999999999999999999999999998765443
No 86
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.11 E-value=2.9e-09 Score=136.50 Aligned_cols=108 Identities=13% Similarity=0.177 Sum_probs=88.5
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHHh-cCCCCceEEEeeecccccccCCcccCEE
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFN-QQDSPFFIFLLSIRAGGVGVNLQAADTV 333 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~Lrkr--GIkylRLDGSTS~dEReeIIDrFN-apDS~i~VFLLSTRAGGEGLNLQaADTV 333 (2442)
.+.++|||+.....++.+.+.|... ++.+..++|.++.. ++.+++|. .+ -+-+|++|+.++.||++..+++|
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~g---k~kILVATdIAERGIDIp~V~~V 468 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSK---NPSIIISTPYLESSVTIRNATHV 468 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccC---ceeEEeccChhhccccccCeeEE
Confidence 3568999999999999999999876 79999999999864 56677773 33 34589999999999999999999
Q ss_pred EEeCCCC------------CccccchhhccccccCCcccEEEEEEecCCCH
Q 000069 334 IIFDTDW------------NPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 372 (2442)
Q Consensus 334 IIYDpPW------------NPardeQAIGRAHRIGQKKEVrVYRLITedSV 372 (2442)
|.++... +...+.||.||++|. ++-.+|+|+++...
T Consensus 469 ID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~ 516 (675)
T PHA02653 469 YDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLL 516 (675)
T ss_pred EECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHh
Confidence 9998322 455778999999997 45778888887754
No 87
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.10 E-value=5.9e-10 Score=132.71 Aligned_cols=115 Identities=17% Similarity=0.322 Sum_probs=101.4
Q ss_pred cHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccc
Q 000069 242 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 321 (2442)
Q Consensus 242 GKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAG 321 (2442)
.|+..+..++..+ ....|+|||+...-++|-|..-|...|+...-|+|+-.+.+|+..++.|..+.- .||++|+.+
T Consensus 450 ~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~v---rILvaTDla 525 (629)
T KOG0336|consen 450 EKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEV---RILVATDLA 525 (629)
T ss_pred HHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCce---EEEEEechh
Confidence 3665555555543 456899999999999999999999999999999999999999999999966543 379999999
Q ss_pred ccccCCcccCEEEEeCCCCCccccchhhccccccCCccc
Q 000069 322 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 360 (2442)
Q Consensus 322 GEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKE 360 (2442)
+.||++....+|++||.|.|-..|.+|+||++|.|.+-.
T Consensus 526 SRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 526 SRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred hcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 999999999999999999999999999999999998754
No 88
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.08 E-value=2e-09 Score=140.43 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=92.5
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhh---cCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEE
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 333 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~Lrk---rGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTV 333 (2442)
...++|||+.....++.+.+.|.. .++.+..++|+++.++|.+.+..|..+ .+-||++|+.++.||++..+++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G---~rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG---RRKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC---CeEEEEecchHHhcccccCceEE
Confidence 357899999999999999999976 578899999999999999999998544 34589999999999999999999
Q ss_pred EEeCCC----CCcc--------------ccchhhccccccCCcccEEEEEEecCCCH
Q 000069 334 IIFDTD----WNPQ--------------VDLQAQARAHRIGQKRDVLVLRFETVQTV 372 (2442)
Q Consensus 334 IIYDpP----WNPa--------------rdeQAIGRAHRIGQKKEVrVYRLITedSV 372 (2442)
|.++.. |+|. .+.||.||++|. .+=++|+|+++...
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 997765 3333 478999999997 36788999886643
No 89
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.04 E-value=3.2e-09 Score=126.80 Aligned_cols=85 Identities=21% Similarity=0.245 Sum_probs=71.2
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhcC--ceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEE
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFKQ--YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 334 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~LrkrG--IkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVI 334 (2442)
.+.|+|||+.....++.|...|+..+ +.+..++|.++..+|.+.. . ..+|++|++++.|||+.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~---~~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------Q---FDILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------c---CCEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999998764 5788999999998887653 1 138999999999999975 4665
Q ss_pred EeCCCCCccccchhhcccc
Q 000069 335 IFDTDWNPQVDLQAQARAH 353 (2442)
Q Consensus 335 IYDpPWNPardeQAIGRAH 353 (2442)
++ +-++..|+||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 66 678889999999974
No 90
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.02 E-value=1.9e-08 Score=128.92 Aligned_cols=124 Identities=21% Similarity=0.226 Sum_probs=107.2
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
..+++..|...|..+...+.++||||.....++.|.++|...|+++..++|.++..+|..+++.|+.+. + .+|++|.
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~--i-~vlV~t~ 504 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE--F-DVLVGIN 504 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCC--c-eEEEEeC
Confidence 345788888888888889999999999999999999999999999999999999999999999997654 2 3688999
Q ss_pred ccccccCCcccCEEEEeCC-----CCCccccchhhccccccCCcccEEEEEEecC
Q 000069 320 AGGVGVNLQAADTVIIFDT-----DWNPQVDLQAQARAHRIGQKRDVLVLRFETV 369 (2442)
Q Consensus 320 AGGEGLNLQaADTVIIYDp-----PWNPardeQAIGRAHRIGQKKEVrVYRLITe 369 (2442)
.+++|+++..+++||++|. +-++..++||+||++|- . .-.++.|+..
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 9999999999999999997 45788999999999994 2 3345555553
No 91
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.02 E-value=6.2e-09 Score=133.31 Aligned_cols=134 Identities=19% Similarity=0.199 Sum_probs=111.6
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
..+++..|.+.|..+...+.++|||+.....++.|.++|...|+.+..++|.++..+|.++++.|+.+.. .+|++|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i---~VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEF---DVLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCc---eEEEEcC
Confidence 4568888888888888899999999999999999999999999999999999999999999999976543 3688999
Q ss_pred ccccccCCcccCEEEEeC-----CCCCccccchhhccccccCCcccEEEEEEecCCC--HHHHHHHH
Q 000069 320 AGGVGVNLQAADTVIIFD-----TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT--VEEQVRAS 379 (2442)
Q Consensus 320 AGGEGLNLQaADTVIIYD-----pPWNPardeQAIGRAHRIGQKKEVrVYRLITedS--VEErILER 379 (2442)
.+++|+++..++.||++| .+-+...++|++||++|.. .. .++.|+...+ +...|.+.
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~G--~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NG--KVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-CC--EEEEEEcCCCHHHHHHHHHH
Confidence 999999999999999999 4667889999999999973 22 3444544433 44444443
No 92
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.98 E-value=5.4e-09 Score=136.03 Aligned_cols=80 Identities=15% Similarity=0.070 Sum_probs=54.9
Q ss_pred hcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhc----ccccEEEEEeccCC--CCHHHH
Q 000069 19 VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY----QSSHRLLLTGTPLQ--NNLEEL 92 (2442)
Q Consensus 19 l~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqL----kSrrRLLLTGTPLQ--NNLeEL 92 (2442)
++.+-.|++.|...|..+.-...+.--.+..||||||||+.... ...-.++.| +..+.+++|+.|-. ..+..+
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~-~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l 82 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESS-QEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPL 82 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccc-cHHHHHHHHHHhCCCcceEEecCCCcccccchHHH
Confidence 44556899999999988554444555567899999999997533 333344444 35678999999965 344555
Q ss_pred HHHHhhh
Q 000069 93 WALLNFL 99 (2442)
Q Consensus 93 wSLLNFL 99 (2442)
-..++-|
T Consensus 83 ~~vmk~L 89 (814)
T TIGR00596 83 ETKMRNL 89 (814)
T ss_pred HHHHHHh
Confidence 5555554
No 93
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.98 E-value=1.1e-08 Score=129.22 Aligned_cols=78 Identities=15% Similarity=0.255 Sum_probs=69.2
Q ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCC-CCccccchhhccccccCCccc
Q 000069 282 QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD-WNPQVDLQAQARAHRIGQKRD 360 (2442)
Q Consensus 282 GIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpP-WNPardeQAIGRAHRIGQKKE 360 (2442)
++++..+||.++.+++++++.+|+++..+ ||++|.+..+|+|+++|..+||+|.. +--+++-|--||++|=+...-
T Consensus 507 ~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSy 583 (677)
T COG1200 507 ELKVGLVHGRMKPAEKDAVMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSY 583 (677)
T ss_pred cceeEEEecCCChHHHHHHHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceE
Confidence 67789999999999999999999887666 89999999999999999999999987 567889999999999766555
Q ss_pred EE
Q 000069 361 VL 362 (2442)
Q Consensus 361 Vr 362 (2442)
|.
T Consensus 584 C~ 585 (677)
T COG1200 584 CV 585 (677)
T ss_pred EE
Confidence 44
No 94
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=4e-09 Score=126.00 Aligned_cols=119 Identities=22% Similarity=0.350 Sum_probs=106.6
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|+..|.++.. .-...+||++...-++.|.+.|..+++....++|.+...+|..+++.|+.+.+. +||+|+..+
T Consensus 252 k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr---vlIttdl~a 324 (397)
T KOG0327|consen 252 KLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR---VLITTDLLA 324 (397)
T ss_pred cccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce---EEeeccccc
Confidence 7888888776 346789999999999999999999999999999999999999999999887665 799999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCC
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
.||++|.+..||+||+|-|...|+.|+||++|.|.+- ...+|+++.
T Consensus 325 rgidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~ 370 (397)
T KOG0327|consen 325 RGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEE 370 (397)
T ss_pred cccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHh
Confidence 9999999999999999999999999999999998753 445566655
No 95
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.94 E-value=3.4e-08 Score=126.89 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=79.4
Q ss_pred CCeEEEEEchHHHHHHHHHHHhhc-----CceEEEEeCCCCHH---------------------HHHHHHHHHhcCCCCc
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTFK-----QYRYLRLDGHTSGG---------------------DRGALIDKFNQQDSPF 311 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~Lrkr-----GIkylRLDGSTS~d---------------------EReeIIDrFNapDS~i 311 (2442)
+.|.+|||.++..+..+.+.|... +...+.++++...+ .+..++++|..+ ..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~-~~~ 592 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE-ENP 592 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC-CCc
Confidence 579999999999888888777543 34456666654332 234789999654 334
Q ss_pred eEEEeeecccccccCCcccCEEEEeCCCCCccccchhhcccccc-CC-cccEEEEEEec
Q 000069 312 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI-GQ-KRDVLVLRFET 368 (2442)
Q Consensus 312 ~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRI-GQ-KKEVrVYRLIT 368 (2442)
. |||..+...+|.|.+.++++++.-+--. +.++|++||+.|+ .. |....|+.|+-
T Consensus 593 ~-ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 593 K-LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred e-EEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 4 5666699999999999999999887665 5689999999995 43 33467777754
No 96
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.92 E-value=1.7e-09 Score=137.69 Aligned_cols=107 Identities=15% Similarity=0.240 Sum_probs=87.2
Q ss_pred CeEEEEEchHHHHHHHHHHHhhc----Cce-EEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEE
Q 000069 259 HRVLFFSTMTRLLDVMEDYLTFK----QYR-YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 333 (2442)
Q Consensus 259 hKVLIFSQFtdTLDILED~Lrkr----GIk-ylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTV 333 (2442)
.|.||||...+.+++|...|... +.+ .+.|+|... +-+..|+.|-. +..+..|.++.+.+.+|+|...|-.+
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeee
Confidence 69999999999999999999543 223 456788765 44567888855 55677899999999999999999999
Q ss_pred EEeCCCCCccccchhhccccccC-------Cccc-EEEEEEec
Q 000069 334 IIFDTDWNPQVDLQAQARAHRIG-------QKRD-VLVLRFET 368 (2442)
Q Consensus 334 IIYDpPWNPardeQAIGRAHRIG-------QKKE-VrVYRLIT 368 (2442)
||+-.-.+-..+.|.+||.-|+- |.|. ..||.|+-
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~ 546 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVD 546 (875)
T ss_pred eehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhhh
Confidence 99999999999999999999973 4444 77777764
No 97
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.91 E-value=9.3e-09 Score=121.26 Aligned_cols=209 Identities=19% Similarity=0.228 Sum_probs=120.5
Q ss_pred EEEEeccccHHHHHHHHHHHHH--------hcccCC----------CCCcchHHHHHHHHhhcCcccccchhhhhhhccC
Q 000069 168 ERLVRCEASAYQKLLMKRVEEN--------LGSIGN----------SKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLI 229 (2442)
Q Consensus 168 E~VIkceMSaeQRkLYKrLeen--------L~Slgs----------skgrsLlNiLMQLRKICNHPyLfqleeEEVEeLi 229 (2442)
++.+..+|+.+|+.+|+.+... +..... .....+...+.+|+.+|+||+|.-...-. ..+.
T Consensus 5 ~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mP-k~ll 83 (297)
T PF11496_consen 5 EYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMP-KQLL 83 (297)
T ss_dssp EEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT---S-S-
T ss_pred eEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCc-cccc
Confidence 5778999999999999877432 111111 01133455667899999999984211100 1111
Q ss_pred CCCCCChhhhhccHHHHHHHHhhhh-----hcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHH---
Q 000069 230 PKHYLPPIVRLCGKLEMLDRLLPKL-----KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI--- 301 (2442)
Q Consensus 230 pe~~l~dLIRsSGKLEaLdrLL~KL-----ratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeII--- 301 (2442)
.......+...|+||.+|.++|..+ ...+.++||.++...++++|+.+|..+++.|.|++|..-.++....-
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~ 163 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNG 163 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccc
Confidence 1122345678999999999999999 67778999999999999999999999999999999975443333222
Q ss_pred ---------HHH-hcCCCCceEEEeeecccccc----cCCcccCEEEEeCCCCCccccc-hhhccccccCCcccEEEEEE
Q 000069 302 ---------DKF-NQQDSPFFIFLLSIRAGGVG----VNLQAADTVIIFDTDWNPQVDL-QAQARAHRIGQKRDVLVLRF 366 (2442)
Q Consensus 302 ---------DrF-NapDS~i~VFLLSTRAGGEG----LNLQaADTVIIYDpPWNParde-QAIGRAHRIGQKKEVrVYRL 366 (2442)
... +.....+.++|++++-.-.. ++-...|.||-||+.+++.... |.+-+.+|-+ +.+-|++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~PiirL 241 (297)
T PF11496_consen 164 NTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPIIRL 241 (297)
T ss_dssp ------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EEEE
T ss_pred ccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEEEE
Confidence 011 12233566777776655442 2334579999999999988754 4444444443 78999999
Q ss_pred ecCCCHHHHHHHH
Q 000069 367 ETVQTVEEQVRAS 379 (2442)
Q Consensus 367 ITedSVEErILER 379 (2442)
+..+|+|.-++..
T Consensus 242 v~~nSiEHi~L~~ 254 (297)
T PF11496_consen 242 VPSNSIEHIELCF 254 (297)
T ss_dssp EETTSHHHHHHHH
T ss_pred eeCCCHHHHHHHc
Confidence 9999999766544
No 98
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.91 E-value=2.4e-08 Score=134.09 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=88.6
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhcCce---EEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEE
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFKQYR---YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 333 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~LrkrGIk---ylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTV 333 (2442)
...++|||+.....++.+.+.|...++. ++.++|.++.++|.++++.+ ..+-+|++|+.++.||++...++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-----SGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-----CCeeEEEeccHHhhccccCcceEE
Confidence 4578999999999999999999887764 67899999999999887653 234589999999999999999999
Q ss_pred EEeC---------------CCCCc---cccchhhccccccCCcccEEEEEEecCCCHH
Q 000069 334 IIFD---------------TDWNP---QVDLQAQARAHRIGQKRDVLVLRFETVQTVE 373 (2442)
Q Consensus 334 IIYD---------------pPWNP---ardeQAIGRAHRIGQKKEVrVYRLITedSVE 373 (2442)
|.++ ++..| ..+.||.||++|.+ +=.+|+|+++..++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~~ 414 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDFL 414 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHHH
Confidence 9985 23333 56899999999983 56688888866443
No 99
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.91 E-value=2.7e-08 Score=124.30 Aligned_cols=97 Identities=22% Similarity=0.325 Sum_probs=75.4
Q ss_pred HHHHHHHHhhc--CceEEEEeCCCCHHHH--HHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCC--CC-c-
Q 000069 271 LDVMEDYLTFK--QYRYLRLDGHTSGGDR--GALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD--WN-P- 342 (2442)
Q Consensus 271 LDILED~Lrkr--GIkylRLDGSTS~dER--eeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpP--WN-P- 342 (2442)
.+.+++.|... +.++.++|+.+....+ .+++++|..++.+ ||++|+..+.|+|+...+.|+++|.+ .| |
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 45555556544 7899999999876655 8999999876655 78999999999999999999877665 22 3
Q ss_pred --------cccchhhccccccCCcccEEEEEEecCC
Q 000069 343 --------QVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 343 --------ardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
..+.|+.||++|-+....|.|..+-..+
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 4689999999998887777766555444
No 100
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.91 E-value=1.4e-08 Score=132.98 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=107.5
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHH----HHHhhcC----ceEEEEeCCCCHHHHHHHHHHHhcCCCCceEE
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVME----DYLTFKQ----YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 314 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILE----D~LrkrG----IkylRLDGSTS~dEReeIIDrFNapDS~i~VF 314 (2442)
++..+..++..+...+-|.|+|+.....+..+. ..+...+ ..+..+.|++...+|.++...|+.++.. +
T Consensus 291 ~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~---~ 367 (851)
T COG1205 291 ALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL---G 367 (851)
T ss_pred hHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc---E
Confidence 556666777777778999999999999998886 4454445 6788899999999999999999887665 8
Q ss_pred EeeecccccccCCcccCEEEEeCCCC-CccccchhhccccccCCcccEEEEEEecCCCHHHHHHHH
Q 000069 315 LLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 379 (2442)
Q Consensus 315 LLSTRAGGEGLNLQaADTVIIYDpPW-NPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILER 379 (2442)
+++|.++..||++...+.||.+-.|- .-..+.|+.||++|-+|.- .++...-.+-++.+++..
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~--l~~~v~~~~~~d~yy~~~ 431 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES--LVLVVLRSDPLDSYYLRH 431 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCc--eEEEEeCCCccchhhhhC
Confidence 99999999999999999999999998 7899999999999999543 333333367777766544
No 101
>PRK09401 reverse gyrase; Reviewed
Probab=98.87 E-value=2.1e-08 Score=134.97 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=82.4
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHH---HHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEee--
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRL---LDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS-- 317 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdT---LDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLS-- 317 (2442)
|...|.+++..+ +.++|||++.... ++.|..+|+..|+++..++|++ .+.+++|.++. +.| |++
T Consensus 316 k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~--~~V-LVata 384 (1176)
T PRK09401 316 SVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGE--VDV-LVGVA 384 (1176)
T ss_pred HHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCC--CCE-EEEec
Confidence 667777777654 4589999998666 9999999999999999999999 23459997765 444 555
Q ss_pred --ecccccccCCcc-cCEEEEeCCCC------Cccccchhhcccccc
Q 000069 318 --IRAGGVGVNLQA-ADTVIIFDTDW------NPQVDLQAQARAHRI 355 (2442)
Q Consensus 318 --TRAGGEGLNLQa-ADTVIIYDpPW------NPardeQAIGRAHRI 355 (2442)
|+.++.|||++. .++|||||.|- ....+..|+||..++
T Consensus 385 s~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 385 SYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 689999999998 89999999997 566677788887644
No 102
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.87 E-value=1.6e-08 Score=132.99 Aligned_cols=109 Identities=13% Similarity=0.085 Sum_probs=99.3
Q ss_pred cCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEE
Q 000069 256 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 335 (2442)
Q Consensus 256 atGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVII 335 (2442)
..+.-.||||..+...+.+..+|+..|++...+|.++...+|..+...|.... + .++++|=|.|-|||-.+...||+
T Consensus 483 ~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~--~-~VivATVAFGMGIdK~DVR~ViH 559 (941)
T KOG0351|consen 483 HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDK--I-RVIVATVAFGMGIDKPDVRFVIH 559 (941)
T ss_pred CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCC--C-eEEEEEeeccCCCCCCceeEEEE
Confidence 34667899999999999999999999999999999999999999999997765 3 36888999999999999999999
Q ss_pred eCCCCCccccchhhccccccCCcccEEEEEEe
Q 000069 336 FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 367 (2442)
Q Consensus 336 YDpPWNPardeQAIGRAHRIGQKKEVrVYRLI 367 (2442)
|.+|-+..-|.|-.||++|-|+...+..|+=.
T Consensus 560 ~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~ 591 (941)
T KOG0351|consen 560 YSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGY 591 (941)
T ss_pred CCCchhHHHHHHhccccCcCCCcceeEEecch
Confidence 99999999999999999999999887766543
No 103
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.77 E-value=7.1e-08 Score=129.86 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=88.3
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhcC---ceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEE
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFKQ---YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 333 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~LrkrG---IkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTV 333 (2442)
....+|||......++.+.+.|...+ +.++.++|.++.++|.++++.| . .+-||++|+.++.||++...++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~----~-~rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH----S-GRRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC----C-CceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 4688899999999999885443 1 24579999999999999999999
Q ss_pred EEeCCC----CC--------------ccccchhhccccccCCcccEEEEEEecCCCHH
Q 000069 334 IIFDTD----WN--------------PQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 373 (2442)
Q Consensus 334 IIYDpP----WN--------------PardeQAIGRAHRIGQKKEVrVYRLITedSVE 373 (2442)
|.++.. || -..+.||.||++|.| +-.+|+|+++...+
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 998843 22 246799999999997 55788998876443
No 104
>PRK09694 helicase Cas3; Provisional
Probab=98.75 E-value=8.1e-08 Score=126.26 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=83.7
Q ss_pred hcCCCeEEEEEchHHHHHHHHHHHhhcC---ceEEEEeCCCCHHHH----HHHHHHHhc-CCCCceEEEeeecccccccC
Q 000069 255 KATDHRVLFFSTMTRLLDVMEDYLTFKQ---YRYLRLDGHTSGGDR----GALIDKFNQ-QDSPFFIFLLSIRAGGVGVN 326 (2442)
Q Consensus 255 ratGhKVLIFSQFtdTLDILED~LrkrG---IkylRLDGSTS~dER----eeIIDrFNa-pDS~i~VFLLSTRAGGEGLN 326 (2442)
...++++|||++..+.+..++++|+..+ +.+..+++.+...+| .+++++|.+ +......|||+|.+...|||
T Consensus 557 ~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLD 636 (878)
T PRK09694 557 ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLD 636 (878)
T ss_pred HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheee
Confidence 3468899999999999999999998764 689999999999998 567889933 32222468999999999999
Q ss_pred CcccCEEEEeCCCCCccccchhhccccccCCc
Q 000069 327 LQAADTVIIFDTDWNPQVDLQAQARAHRIGQK 358 (2442)
Q Consensus 327 LQaADTVIIYDpPWNPardeQAIGRAHRIGQK 358 (2442)
+ .+|.||....| ...++||+||+||.|.+
T Consensus 637 I-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 637 L-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred c-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9 57998887666 56899999999999874
No 105
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.67 E-value=1.2e-06 Score=114.63 Aligned_cols=130 Identities=12% Similarity=0.119 Sum_probs=112.6
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.++.+.+..+...|+-|||||.+....++|..+|...|+.+..|++.....+|..+.+.|+.+ . ++|+|+
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~---VtIATN 500 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--A---VTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--c---EEEecc
Confidence 44599999999999999999999999999999999999999999999999999999999999999655 2 899999
Q ss_pred ccccccCCcc--------------------------------------cCEEEEeCCCCCccccchhhccccccCCcccE
Q 000069 320 AGGVGVNLQA--------------------------------------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 361 (2442)
Q Consensus 320 AGGEGLNLQa--------------------------------------ADTVIIYDpPWNPardeQAIGRAHRIGQKKEV 361 (2442)
.+|.|+++.- .=+||.-..+-|-..+.|..||++|.|..-..
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999999762 33788888999999999999999999998776
Q ss_pred EEEEEecCCCHHHHHHHH
Q 000069 362 LVLRFETVQTVEEQVRAS 379 (2442)
Q Consensus 362 rVYRLITedSVEErILER 379 (2442)
+.| -|+|+.++.+
T Consensus 581 ~f~-----lSleD~l~~~ 593 (896)
T PRK13104 581 RFY-----LSLEDNLMRI 593 (896)
T ss_pred EEE-----EEcCcHHHHH
Confidence 555 2455555544
No 106
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.64 E-value=8.4e-07 Score=117.43 Aligned_cols=108 Identities=14% Similarity=0.175 Sum_probs=89.5
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEE
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 334 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~Lrkr--GIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVI 334 (2442)
+|.+|..-.+....+..+...|+.. ..++...||.|+..+-++++..|.+++.+ +|+||.....||++++|||+|
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d---VLv~TTIIEtGIDIPnANTiI 878 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD---VLVCTTIIETGIDIPNANTII 878 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC---EEEEeeeeecCcCCCCCceEE
Confidence 4667766677777788888877654 56789999999999999999999887665 799999999999999999999
Q ss_pred EeCCC-CCccccchhhccccccCCcccEEEEEEecC
Q 000069 335 IFDTD-WNPQVDLQAQARAHRIGQKRDVLVLRFETV 369 (2442)
Q Consensus 335 IYDpP-WNPardeQAIGRAHRIGQKKEVrVYRLITe 369 (2442)
+-+.+ +--+++-|--||++|-. +.-|.|.|+..
T Consensus 879 Ie~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 879 IERADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred EeccccccHHHHHHhccccCCcc--ceEEEEEeecC
Confidence 99887 56889999999999953 45666766654
No 107
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.64 E-value=1.1e-07 Score=118.15 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=103.9
Q ss_pred ccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHH-hhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 241 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL-TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 241 SGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~L-rkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
.+|+.+|.+++.... .-.+|||-|..+....|...| ...++.+..++|..+..+|...+++|+.+.- -+|++|+
T Consensus 372 ~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~I---wvLicTd 446 (593)
T KOG0344|consen 372 KGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKI---WVLICTD 446 (593)
T ss_pred hhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCe---eEEEehh
Confidence 458888888887653 457999999999999999999 8889999999999999999999999987743 3799999
Q ss_pred ccccccCCcccCEEEEeCCCCCccccchhhccccccCCccc
Q 000069 320 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 360 (2442)
Q Consensus 320 AGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKE 360 (2442)
.++.||+|+.++.||+||.+-.-..|+.|+||.+|-|+.-.
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~ 487 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGK 487 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcc
Confidence 99999999999999999999999999999999999998654
No 108
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.62 E-value=2.2e-06 Score=111.93 Aligned_cols=130 Identities=14% Similarity=0.115 Sum_probs=109.4
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.+|.+.+.++...++.|||||......++|..+|...|+++..|+|. ..+|+..+..|..... .++|+|+
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g---~VtIATN 486 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPG---AVTIATN 486 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCc---eEEEecc
Confidence 3459999999998888889999999999999999999999999999999995 6789999999955433 4899999
Q ss_pred ccccccCCcc--------------------------------------cCEEEEeCCCCCccccchhhccccccCCcccE
Q 000069 320 AGGVGVNLQA--------------------------------------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 361 (2442)
Q Consensus 320 AGGEGLNLQa--------------------------------------ADTVIIYDpPWNPardeQAIGRAHRIGQKKEV 361 (2442)
.+|+|+++.- .=+||.-..+-|-..+.|..||++|.|..-..
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 9999998654 34788888999999999999999999998776
Q ss_pred EEEEEecCCCHHHHHHHH
Q 000069 362 LVLRFETVQTVEEQVRAS 379 (2442)
Q Consensus 362 rVYRLITedSVEErILER 379 (2442)
+.|. |+|+.++.+
T Consensus 567 ~f~l-----SleD~l~~~ 579 (830)
T PRK12904 567 RFYL-----SLEDDLMRI 579 (830)
T ss_pred eEEE-----EcCcHHHHh
Confidence 6552 345555543
No 109
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.60 E-value=2.3e-06 Score=111.95 Aligned_cols=120 Identities=10% Similarity=0.086 Sum_probs=107.2
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.++.+-+..+.+.|+.|||||......++|..+|...|+.+..|++.....+|..+.+.|+.+. ++|+|.
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecC
Confidence 356999999999999999999999999999999999999999999999999999999999999996543 899999
Q ss_pred ccccccCCcc-------------------------------------cCEEEEeCCCCCccccchhhccccccCCcccEE
Q 000069 320 AGGVGVNLQA-------------------------------------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 362 (2442)
Q Consensus 320 AGGEGLNLQa-------------------------------------ADTVIIYDpPWNPardeQAIGRAHRIGQKKEVr 362 (2442)
.+|.|+++.- .=+||.-..+-|-..+.|..||++|.|..-...
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 9999999763 347888899999999999999999999976654
Q ss_pred EE
Q 000069 363 VL 364 (2442)
Q Consensus 363 VY 364 (2442)
.|
T Consensus 586 f~ 587 (908)
T PRK13107 586 FY 587 (908)
T ss_pred EE
Confidence 44
No 110
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.60 E-value=2.4e-07 Score=125.14 Aligned_cols=85 Identities=11% Similarity=0.169 Sum_probs=70.6
Q ss_pred HHHHHhhhhhcCCCeEEEEEchH---HHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEee----e
Q 000069 246 MLDRLLPKLKATDHRVLFFSTMT---RLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS----I 318 (2442)
Q Consensus 246 aLdrLL~KLratGhKVLIFSQFt---dTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLS----T 318 (2442)
.|.++|..+ +.+.|||++.. ..++.|..+|+..|+++..++|+++ +..+++|..+.. . +|++ |
T Consensus 317 ~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~~--~-vLVata~~t 386 (1171)
T TIGR01054 317 TLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEGEI--D-VLIGVASYY 386 (1171)
T ss_pred HHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcCCC--C-EEEEecccc
Confidence 445555443 46899999988 9999999999999999999999986 368999987654 4 4555 5
Q ss_pred cccccccCCcc-cCEEEEeCCCC
Q 000069 319 RAGGVGVNLQA-ADTVIIFDTDW 340 (2442)
Q Consensus 319 RAGGEGLNLQa-ADTVIIYDpPW 340 (2442)
+.+++||||+. .++|||||+|-
T Consensus 387 dv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 387 GTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred CcccccCCCCccccEEEEECCCC
Confidence 89999999998 79999999994
No 111
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.59 E-value=1.5e-07 Score=113.60 Aligned_cols=124 Identities=14% Similarity=0.129 Sum_probs=108.0
Q ss_pred ccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecc
Q 000069 241 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 320 (2442)
Q Consensus 241 SGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRA 320 (2442)
..|..+|..++..... .++.+||+.-...++++...|+..|+....|+|++....|..-+.+|+..... +|+.|+.
T Consensus 245 a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~---~lvvTdv 320 (529)
T KOG0337|consen 245 AEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTS---ILVVTDV 320 (529)
T ss_pred HHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccc---eEEEehh
Confidence 3477888888876543 56899999999999999999999999999999999999999999999876555 8999999
Q ss_pred cccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCC
Q 000069 321 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 321 GGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
+..|+++.--++||+||.+-.+..+..|.||+.|-|.+- +-|-|++.+
T Consensus 321 aaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~~ 368 (529)
T KOG0337|consen 321 AARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVAST 368 (529)
T ss_pred hhccCCCccccccccccCCCCCceEEEEecchhhccccc--eEEEEEecc
Confidence 999999999999999999999999999999999998653 445555544
No 112
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.58 E-value=6.5e-07 Score=110.97 Aligned_cols=107 Identities=20% Similarity=0.195 Sum_probs=91.0
Q ss_pred CeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEE---
Q 000069 259 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII--- 335 (2442)
Q Consensus 259 hKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVII--- 335 (2442)
.+.|||+..+.-.+.|.++|..+|++...+|++++..+|..+-..|.+..-. .+++|.|++-|++++.. .|||
T Consensus 441 GQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~---~VVTTAAL~AGVDFPAS-QVIFEsL 516 (830)
T COG1202 441 GQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELA---AVVTTAALAAGVDFPAS-QVIFESL 516 (830)
T ss_pred CceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcc---eEeehhhhhcCCCCchH-HHHHHHH
Confidence 5789999999999999999999999999999999999999999999766544 68899999999999854 3443
Q ss_pred -eCCCC-CccccchhhccccccCCcccEEEEEEecC
Q 000069 336 -FDTDW-NPQVDLQAQARAHRIGQKRDVLVLRFETV 369 (2442)
Q Consensus 336 -YDpPW-NPardeQAIGRAHRIGQKKEVrVYRLITe 369 (2442)
+...| +|..+.|..||++|.+-...-.||.++-.
T Consensus 517 aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 517 AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred HcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 44555 89999999999999998766666666643
No 113
>COG4889 Predicted helicase [General function prediction only]
Probab=98.57 E-value=4.5e-08 Score=123.91 Aligned_cols=86 Identities=22% Similarity=0.194 Sum_probs=67.0
Q ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCccc-
Q 000069 282 QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD- 360 (2442)
Q Consensus 282 GIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKE- 360 (2442)
.+....+||.|...+|.+++..-|.-..+..-+|-..|+++||++++.-|.|||||+--.-...+|+.||+-|.--.|+
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCcc
Confidence 3556778999999999776654443234444578889999999999999999999999999999999999999866544
Q ss_pred EEEEEEe
Q 000069 361 VLVLRFE 367 (2442)
Q Consensus 361 VrVYRLI 367 (2442)
-+|...+
T Consensus 579 GYIILPI 585 (1518)
T COG4889 579 GYIILPI 585 (1518)
T ss_pred ceEEEEe
Confidence 3443333
No 114
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.57 E-value=2.7e-07 Score=119.01 Aligned_cols=104 Identities=22% Similarity=0.346 Sum_probs=80.4
Q ss_pred EEchHHHHHHHHHHHhhc--CceEEEEeCCCC--HHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCC
Q 000069 264 FSTMTRLLDVMEDYLTFK--QYRYLRLDGHTS--GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD 339 (2442)
Q Consensus 264 FSQFtdTLDILED~Lrkr--GIkylRLDGSTS--~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpP 339 (2442)
|..+..-.+.+++.|... ++++.++|+.+. ..++++++++|..++.. ||++|+....|+|+...+.|+++|.+
T Consensus 432 l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD 508 (679)
T PRK05580 432 LVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDAD 508 (679)
T ss_pred eEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCc
Confidence 333344455666666554 788999999885 46799999999876655 78999999999999999999888766
Q ss_pred ---CCc---------cccchhhccccccCCcccEEEEEEecCC
Q 000069 340 ---WNP---------QVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 340 ---WNP---------ardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
+.| ..+.|+.||++|.+....|.|..+-..+
T Consensus 509 ~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~ 551 (679)
T PRK05580 509 LGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEH 551 (679)
T ss_pred hhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCC
Confidence 233 5689999999998888778776655444
No 115
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.55 E-value=1.4e-06 Score=113.51 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=103.4
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.+|.+.+......+..|||||.+....+.|...|...|+.+..|++.....++..+...|..+ .++|+|.
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g-----~VtIATn 496 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRG-----AVTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCc-----eEEEEec
Confidence 34599999999988888999999999999999999999999999999999998866666666555322 2899999
Q ss_pred ccccccCCc---ccC-----EEEEeCCCCCccccchhhccccccCCcccEEEE
Q 000069 320 AGGVGVNLQ---AAD-----TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 320 AGGEGLNLQ---aAD-----TVIIYDpPWNPardeQAIGRAHRIGQKKEVrVY 364 (2442)
.+|+|+++. ... +||+++.|-|...+.|++||++|.|..-....|
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~ 549 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 549 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEE
Confidence 999999995 566 999999999999999999999999998765433
No 116
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.53 E-value=9.7e-07 Score=115.20 Aligned_cols=109 Identities=27% Similarity=0.233 Sum_probs=75.9
Q ss_pred HHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhh----c---------------------------------CceEEEE
Q 000069 246 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF----K---------------------------------QYRYLRL 288 (2442)
Q Consensus 246 aLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrk----r---------------------------------GIkylRL 288 (2442)
.+..++....+.++.+|||++.+.........|+. . -..+...
T Consensus 241 ~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafH 320 (766)
T COG1204 241 LALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFH 320 (766)
T ss_pred HHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccc
Confidence 33444444556678888888776654444443331 0 0124556
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEE-----eC-----CCCCccccchhhccccccCCc
Q 000069 289 DGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII-----FD-----TDWNPQVDLQAQARAHRIGQK 358 (2442)
Q Consensus 289 DGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVII-----YD-----pPWNPardeQAIGRAHRIGQK 358 (2442)
+.+++..+|+-+-+.|+++.-+ +|+||..+..|+||+. ++||+ || -+-++..++|.+||++|.|=.
T Consensus 321 hAGL~~~~R~~vE~~Fr~g~ik---Vlv~TpTLA~GVNLPA-~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 321 HAGLPREDRQLVEDAFRKGKIK---VLVSTPTLAAGVNLPA-RTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred ccCCCHHHHHHHHHHHhcCCce---EEEechHHhhhcCCcc-eEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcC
Confidence 7788999999999999877544 7999999999999985 45554 44 334567789999999999854
No 117
>PRK14701 reverse gyrase; Provisional
Probab=98.50 E-value=2e-07 Score=128.64 Aligned_cols=105 Identities=15% Similarity=0.231 Sum_probs=83.9
Q ss_pred HHHHHHhhhhhcCCCeEEEEEchHHH---HHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeee---
Q 000069 245 EMLDRLLPKLKATDHRVLFFSTMTRL---LDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI--- 318 (2442)
Q Consensus 245 EaLdrLL~KLratGhKVLIFSQFtdT---LDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLST--- 318 (2442)
..|.++|..+ +...|||++.... ++.|..+|...|+++..++|+ |.+.+++|..++.. +|++|
T Consensus 320 ~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~---VLVaT~s~ 388 (1638)
T PRK14701 320 EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEID---YLIGVATY 388 (1638)
T ss_pred HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCC---EEEEecCC
Confidence 4566676654 5789999987654 589999999999999999984 88999999877654 67777
Q ss_pred -cccccccCCcc-cCEEEEeCCCC---Cccccchhh-------------ccccccCCccc
Q 000069 319 -RAGGVGVNLQA-ADTVIIFDTDW---NPQVDLQAQ-------------ARAHRIGQKRD 360 (2442)
Q Consensus 319 -RAGGEGLNLQa-ADTVIIYDpPW---NPardeQAI-------------GRAHRIGQKKE 360 (2442)
+.++.|||++. ..+|||||.|- +-..+.|.. ||+.|-|..-+
T Consensus 389 ~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 389 YGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred CCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcch
Confidence 47889999998 99999999998 666555655 77777776433
No 118
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.48 E-value=4.5e-06 Score=99.61 Aligned_cols=123 Identities=17% Similarity=0.184 Sum_probs=95.3
Q ss_pred HHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhh-cCc-eEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccccc
Q 000069 246 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQY-RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 323 (2442)
Q Consensus 246 aLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrk-rGI-kylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGE 323 (2442)
.|.++|++.+.++.-+|||.....++......|+. .+. +...++... ..|.+.+++|+++.-. +|++|..+.+
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~---lLiTTTILER 367 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKIT---LLITTTILER 367 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceE---EEEEeehhhc
Confidence 67889999999999999999999999999998843 232 223344333 4799999999877544 8999999999
Q ss_pred ccCCcccCEEEEeCCC--CCccccchhhccccccCCcccEEEEEEecCCCHH
Q 000069 324 GVNLQAADTVIIFDTD--WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 373 (2442)
Q Consensus 324 GLNLQaADTVIIYDpP--WNPardeQAIGRAHRIGQKKEVrVYRLITedSVE 373 (2442)
|+.+...|+.|+=--+ ++-..++|--||++|--..-.-.|+.|..--|-.
T Consensus 368 GVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 368 GVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred ccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 9999999999886555 8889999999999996554444555555444433
No 119
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=98.48 E-value=5.9e-08 Score=94.34 Aligned_cols=61 Identities=36% Similarity=0.567 Sum_probs=44.9
Q ss_pred CCCCCCCCChhHHHHHHHHhhhcCCCCCCCCCCccccccccccCcccccccCCCcccceeeccccCCCHHHHH
Q 000069 474 PPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFE 546 (2442)
Q Consensus 474 P~lp~rL~~d~EL~~~ye~~e~~~~~~~~v~~~~~~krk~e~~~~~d~q~~GRG~R~Rk~v~Y~d~ltE~q~l 546 (2442)
..+|.|||.++|||+||..+.... ..+...........||||+|+|+.|.|+|+|||+||+
T Consensus 14 ~~~p~RLm~e~ELPe~~~~d~~~~------------~~~~~~e~~~~~~~~grG~R~RK~V~Y~D~LTEeQwL 74 (74)
T PF14619_consen 14 KPYPSRLMEESELPEWYREDIEEE------------LEKEEEEEEAETNEYGRGKRERKEVSYDDGLTEEQWL 74 (74)
T ss_pred CCCCccccchhhchHHHHhcchhh------------hhhhhhhhccchhhcccccccccccccCCCCCHHHhC
Confidence 467899999999999998752211 0111111123456799999999999999999999996
No 120
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.45 E-value=6.8e-07 Score=117.27 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=107.6
Q ss_pred ccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecc
Q 000069 241 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 320 (2442)
Q Consensus 241 SGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRA 320 (2442)
..|+.+|.+.+..+...+..|||||.+....+.|..+|...|+.+..|++ +..+|+..|..|..... .++|+|+.
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g---~VtIATNM 655 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKG---AVTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCC---eEEEeccC
Confidence 35999999999988888999999999999999999999999999999997 67799999999954433 48999999
Q ss_pred cccccCCcccC--------EEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHH
Q 000069 321 GGVGVNLQAAD--------TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 379 (2442)
Q Consensus 321 GGEGLNLQaAD--------TVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILER 379 (2442)
+|+|+++.-.. +||.++.+-+...+.|++||++|.|..-....| -|.|+.++.+
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ff-----vSleD~Lmr~ 717 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFY-----VSLEDELMRL 717 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEE-----echhHHHHHh
Confidence 99999998433 448889999999999999999999997665333 2345555443
No 121
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.41 E-value=1.6e-06 Score=104.99 Aligned_cols=104 Identities=14% Similarity=0.145 Sum_probs=96.6
Q ss_pred eEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCC
Q 000069 260 RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD 339 (2442)
Q Consensus 260 KVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpP 339 (2442)
--||||.-++..+.|.-.|..+|+....++.+.+..+|..+.+.|-.++-+ +|++|-..|.|++-.....||+++++
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~ 333 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPS 333 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC---EEEEEeccccccCCcceeEEEecCch
Confidence 469999999999999999999999999999999999999999999776655 68889999999999999999999999
Q ss_pred CCccccchhhccccccCCcccEEEEEE
Q 000069 340 WNPQVDLQAQARAHRIGQKRDVLVLRF 366 (2442)
Q Consensus 340 WNPardeQAIGRAHRIGQKKEVrVYRL 366 (2442)
-|-+-|-|--||++|-|-..-+++||-
T Consensus 334 qn~AgYYQESGRAGRDGk~SyCRLYYs 360 (641)
T KOG0352|consen 334 QNLAGYYQESGRAGRDGKRSYCRLYYS 360 (641)
T ss_pred hhhHHHHHhccccccCCCccceeeeec
Confidence 999999999999999999888988864
No 122
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=98.33 E-value=1.8e-06 Score=112.90 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=110.1
Q ss_pred ccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecc
Q 000069 241 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 320 (2442)
Q Consensus 241 SGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRA 320 (2442)
..||..|..+|..+.. ..++|||++...-++.|..-|...||....|+|+.+..+|...+.+|+... ..+|++|+.
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~---~~LLvaTsv 672 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGV---VNLLVATSV 672 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccC---ceEEEehhh
Confidence 4599999999987665 779999999999999999999999999999999999999999999996653 448999999
Q ss_pred cccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecC
Q 000069 321 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 369 (2442)
Q Consensus 321 GGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITe 369 (2442)
+..||++..-..||+||.+-....|..|.||..|-|.+- ..|.|+..
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 999999999999999999988888999999999998877 55666665
No 123
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.30 E-value=7.5e-06 Score=108.19 Aligned_cols=90 Identities=19% Similarity=0.293 Sum_probs=64.3
Q ss_pred HHHHHhhhh-hcCCCeEEEEEchHHHHHHHHHHHhh----cCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecc
Q 000069 246 MLDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTF----KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 320 (2442)
Q Consensus 246 aLdrLL~KL-ratGhKVLIFSQFtdTLDILED~Lrk----rGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRA 320 (2442)
.+.+.|.++ ...+.++|||+.....++.+.+.|.. .++. .+..+.. ..|.+++++|+.++.. +|++|..
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~---iLlgt~s 734 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKA---ILLGTSS 734 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCe---EEEEcce
Confidence 333444333 34567899999999999999999864 3443 3333333 5789999999765433 7788999
Q ss_pred cccccCCcc--cCEEEEeCCCCC
Q 000069 321 GGVGVNLQA--ADTVIIFDTDWN 341 (2442)
Q Consensus 321 GGEGLNLQa--ADTVIIYDpPWN 341 (2442)
..||||+.. ...||+.-+|+-
T Consensus 735 f~EGVD~~g~~l~~viI~~LPf~ 757 (850)
T TIGR01407 735 FWEGVDFPGNGLVCLVIPRLPFA 757 (850)
T ss_pred eecccccCCCceEEEEEeCCCCC
Confidence 999999987 557788887763
No 124
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.19 E-value=2.1e-05 Score=102.69 Aligned_cols=137 Identities=15% Similarity=0.085 Sum_probs=103.6
Q ss_pred hhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcC-CCCceEEEeeecccccccCCcc
Q 000069 251 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ-DSPFFIFLLSIRAGGVGVNLQA 329 (2442)
Q Consensus 251 L~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNap-DS~i~VFLLSTRAGGEGLNLQa 329 (2442)
+..-...+.|++|.++..+.+..++..|+..+..++.||+.+...+|.+.++++..- ..+-..|+|+|.+...|+|+-
T Consensus 433 ~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid- 511 (733)
T COG1203 433 ISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID- 511 (733)
T ss_pred chhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-
Confidence 333455689999999999999999999998888899999999999999988865431 112234799999999999986
Q ss_pred cCEEEEeCCCCCccccchhhccccccC--CcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhh
Q 000069 330 ADTVIIFDTDWNPQVDLQAQARAHRIG--QKRDVLVLRFETVQTVEEQVRASAEHKLGVANQS 390 (2442)
Q Consensus 330 ADTVIIYDpPWNPardeQAIGRAHRIG--QKKEVrVYRLITedSVEErILERaqrKLdLinKV 390 (2442)
.|.+|-= .--...++||.||++|.| ....+++|..........+.+.....+.......
T Consensus 512 fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (733)
T COG1203 512 FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSLEEL 572 (733)
T ss_pred cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhcccccc
Confidence 6666541 112356899999999999 4556888887777777777777666665544433
No 125
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.14 E-value=3.9e-06 Score=101.50 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=87.7
Q ss_pred CCeEEEEEchHHHHHHHHHHHhhcC---ceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEE
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTFKQ---YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 334 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~LrkrG---IkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVI 334 (2442)
-+|.||||....-.|-|+++|+.+| |..+-++|..+.++|.+.++.|.+.+-. |||+|+++.+||+++..-.+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceEE
Confidence 4789999999999999999998775 6778899999999999999999877655 999999999999999999999
Q ss_pred EeCCCCCccccchhhccccccC
Q 000069 335 IFDTDWNPQVDLQAQARAHRIG 356 (2442)
Q Consensus 335 IYDpPWNPardeQAIGRAHRIG 356 (2442)
+..+|-.-..|..||||++|.-
T Consensus 582 nvtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEecCcccchhhhhhhccchhh
Confidence 9999999999999999988853
No 126
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.13 E-value=2.6e-05 Score=102.16 Aligned_cols=71 Identities=21% Similarity=0.108 Sum_probs=55.6
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccc----------cchhhcccccc
Q 000069 286 LRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQV----------DLQAQARAHRI 355 (2442)
Q Consensus 286 lRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPar----------deQAIGRAHRI 355 (2442)
...+.++...+|+-.-+.|..+.-+ +|+||..+..|+||++--.+|-=..-|+... .+|-+|||+|.
T Consensus 400 ~iHhAGm~r~DR~l~E~~F~~G~i~---vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRP 476 (1230)
T KOG0952|consen 400 GIHHAGMLRSDRQLVEKEFKEGHIK---VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRP 476 (1230)
T ss_pred hhcccccchhhHHHHHHHHhcCCce---EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCC
Confidence 3455677888999999999765433 6999999999999998777776666677765 68999999997
Q ss_pred CCcc
Q 000069 356 GQKR 359 (2442)
Q Consensus 356 GQKK 359 (2442)
.=.+
T Consensus 477 qFd~ 480 (1230)
T KOG0952|consen 477 QFDS 480 (1230)
T ss_pred CCCC
Confidence 6433
No 127
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.03 E-value=4.4e-05 Score=97.35 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=68.2
Q ss_pred HHHhcCCCCceEEEeeecccccccCCcccC-------EE-EEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHH
Q 000069 302 DKFNQQDSPFFIFLLSIRAGGVGVNLQAAD-------TV-IIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 373 (2442)
Q Consensus 302 DrFNapDS~i~VFLLSTRAGGEGLNLQaAD-------TV-IIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVE 373 (2442)
++|-++ ..-|-||| .|++-||.||.-. +| |-+++||+..+-+|-+||.||-.|.+--....||++---|
T Consensus 851 qrFM~G--eK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 851 QRFMDG--EKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred hhhccc--cceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 456433 33455565 8899999999533 33 5589999999999999999999999877777788877778
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 000069 374 EQVRASAEHKLGVANQSITA 393 (2442)
Q Consensus 374 ErILERaqrKLdLinKVIgA 393 (2442)
.+...+..+++.-...+..+
T Consensus 928 rRFAS~VAKRLESLGALThG 947 (1300)
T KOG1513|consen 928 RRFASIVAKRLESLGALTHG 947 (1300)
T ss_pred hHHHHHHHHHHHhhcccccc
Confidence 87777788888777766544
No 128
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.02 E-value=8.1e-06 Score=79.77 Aligned_cols=66 Identities=32% Similarity=0.412 Sum_probs=50.3
Q ss_pred hcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHH---HHHHhcccccEEEEEecc
Q 000069 19 VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLN---ADLKHYQSSHRLLLTGTP 84 (2442)
Q Consensus 19 l~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLS---KALKqLkSrrRLLLTGTP 84 (2442)
.....+|+|+||+.+.+......+....|++|||||+|.+.+...... .........++++|||||
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 356789999999988775444444566899999999999998765443 233445778899999998
No 129
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.95 E-value=2.5e-05 Score=92.31 Aligned_cols=93 Identities=19% Similarity=0.228 Sum_probs=75.9
Q ss_pred HHHHHHhcCCCCceEEEeeecccccccCCcc--------cCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCC
Q 000069 299 ALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA--------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 299 eIIDrFNapDS~i~VFLLSTRAGGEGLNLQa--------ADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
...+.|+.+. ..|+|+| +||++||.||. =...|.++++|+....+|-+||+||-||.....+..+++.-
T Consensus 52 ~e~~~F~~g~--k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGE--KDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCC--ceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 4567898764 4566665 99999999994 23457899999999999999999999999886666677777
Q ss_pred CHHHHHHHHHHHHHHHHHhhhccC
Q 000069 371 TVEEQVRASAEHKLGVANQSITAG 394 (2442)
Q Consensus 371 SVEErILERaqrKLdLinKVIgAG 394 (2442)
..|.+......+|++....+..+.
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt~gd 152 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALTRGD 152 (278)
T ss_pred HHHHHHHHHHHHHHhhccccccCc
Confidence 789999999999999888777543
No 130
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.94 E-value=0.0004 Score=87.12 Aligned_cols=133 Identities=18% Similarity=0.229 Sum_probs=108.9
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
.++=|..-+.+..+.+.|+||-+--..+++-|.+||...|+++..+|.....-+|.++|...+.+.-+ +|+....+.
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINLLR 507 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINLLR 507 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehhhh
Confidence 34444444444556789999999999999999999999999999999999999999999999877544 788999999
Q ss_pred cccCCcccCEEEEeCCC-----CCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHH
Q 000069 323 VGVNLQAADTVIIFDTD-----WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 379 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpP-----WNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILER 379 (2442)
+||+|+.+..|.|+|.+ .+-..++|-|||+.|--.. .|..|-=...++++..|-+.
T Consensus 508 EGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET 568 (663)
T COG0556 508 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDET 568 (663)
T ss_pred ccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHH
Confidence 99999999999999987 4788999999999995332 35555444456777777554
No 131
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.86 E-value=0.00031 Score=94.30 Aligned_cols=96 Identities=24% Similarity=0.329 Sum_probs=67.1
Q ss_pred HHHHHHhhhhh-cCCCeEEEEEchHHHHHHHHHHHhhcCc--eEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccc
Q 000069 245 EMLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFKQY--RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 321 (2442)
Q Consensus 245 EaLdrLL~KLr-atGhKVLIFSQFtdTLDILED~LrkrGI--kylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAG 321 (2442)
..+.+.|..+. ..+.++|||+....++..+.++|..... .+..+.-+++...|.+++++|+..... +|+.+...
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~---iLlG~~sF 814 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA---ILLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe---EEEecCcc
Confidence 34444444433 4567888888888999988888864322 233343333335689999999765433 67888999
Q ss_pred ccccCCcc--cCEEEEeCCCC-Ccc
Q 000069 322 GVGVNLQA--ADTVIIFDTDW-NPQ 343 (2442)
Q Consensus 322 GEGLNLQa--ADTVIIYDpPW-NPa 343 (2442)
.||||+.. +..||+.-+|+ +|.
T Consensus 815 wEGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred cCccccCCCceEEEEEecCCCCCCC
Confidence 99999986 58899999888 554
No 132
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=97.82 E-value=0.0012 Score=86.55 Aligned_cols=80 Identities=20% Similarity=0.133 Sum_probs=52.9
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCC---------CCCccccchhhccccccC
Q 000069 286 LRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT---------DWNPQVDLQAQARAHRIG 356 (2442)
Q Consensus 286 lRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDp---------PWNPardeQAIGRAHRIG 356 (2442)
...||+.=.--++-+---|..+ +--+|++|...+.|+|+++ .+|||-.+ .-+|..|.|.-|||+|-|
T Consensus 634 aVHH~GlLPivKE~VE~LFqrG---lVKVLFATETFAMGVNMPA-RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRG 709 (1248)
T KOG0947|consen 634 AVHHGGLLPIVKEVVELLFQRG---LVKVLFATETFAMGVNMPA-RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRG 709 (1248)
T ss_pred hhhcccchHHHHHHHHHHHhcC---ceEEEeehhhhhhhcCCCc-eeEEeeehhhccCcceeecCChhHHhhhccccccc
Confidence 3445554433333334456554 3337999999999999985 45555332 358999999999999999
Q ss_pred CcccEEEEEEecC
Q 000069 357 QKRDVLVLRFETV 369 (2442)
Q Consensus 357 QKKEVrVYRLITe 369 (2442)
-...-+|..++..
T Consensus 710 lD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 710 LDETGTVIIMCKD 722 (1248)
T ss_pred cCcCceEEEEecC
Confidence 8766555555543
No 133
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.77 E-value=0.00032 Score=93.12 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=64.4
Q ss_pred HHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccc
Q 000069 245 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 324 (2442)
Q Consensus 245 EaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEG 324 (2442)
+.+.+.|..+...+.++|||+....+++.+.+.|....+.. ...|... .|.+++++|+..+.. +|+.+....||
T Consensus 634 ~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEG 707 (820)
T PRK07246 634 EEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEG 707 (820)
T ss_pred HHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCC
Confidence 35555555555667889999988999999888887654443 4445332 356799999764433 78888999999
Q ss_pred cCCcc--cCEEEEeCCCCC
Q 000069 325 VNLQA--ADTVIIFDTDWN 341 (2442)
Q Consensus 325 LNLQa--ADTVIIYDpPWN 341 (2442)
+|+.. +..||+.-+|+-
T Consensus 708 VD~p~~~~~~viI~kLPF~ 726 (820)
T PRK07246 708 VDFVQADRMIEVITRLPFD 726 (820)
T ss_pred CCCCCCCeEEEEEecCCCC
Confidence 99963 566777776643
No 134
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.74 E-value=0.00079 Score=88.10 Aligned_cols=91 Identities=20% Similarity=0.328 Sum_probs=62.7
Q ss_pred HHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhc-CceEEEEeCCCCHHHHHHHHHHHhc----CCCCceEEEeee
Q 000069 244 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSGGDRGALIDKFNQ----QDSPFFIFLLSI 318 (2442)
Q Consensus 244 LEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrkr-GIkylRLDGSTS~dEReeIIDrFNa----pDS~i~VFLLST 318 (2442)
...+.+.|..+...+.++|||+.....++.+.++|... ++. +.+.|. ..|.+++++|.+ ++. .+|+++
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~---~VL~g~ 592 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEG---SVLFGL 592 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCC---eEEEEe
Confidence 34455555444445556888888888888888888642 333 334553 357788877753 222 367778
Q ss_pred cccccccCCcc--cCEEEEeCCCCC
Q 000069 319 RAGGVGVNLQA--ADTVIIFDTDWN 341 (2442)
Q Consensus 319 RAGGEGLNLQa--ADTVIIYDpPWN 341 (2442)
....||||+.. +..||+.-+|+-
T Consensus 593 ~sf~EGVD~pGd~l~~vII~kLPF~ 617 (697)
T PRK11747 593 QSFAEGLDLPGDYLTQVIITKIPFA 617 (697)
T ss_pred ccccccccCCCCceEEEEEEcCCCC
Confidence 89999999975 889999998873
No 135
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.65 E-value=0.00036 Score=91.07 Aligned_cols=96 Identities=14% Similarity=0.207 Sum_probs=63.8
Q ss_pred HHHHHhhhh-hcCCCeEEEEEchHHHHHHHHHHHhhcCc-------eEEEEeCCCCHHHHHHHHHHHhcC-CCCceEEEe
Q 000069 246 MLDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTFKQY-------RYLRLDGHTSGGDRGALIDKFNQQ-DSPFFIFLL 316 (2442)
Q Consensus 246 aLdrLL~KL-ratGhKVLIFSQFtdTLDILED~LrkrGI-------kylRLDGSTS~dEReeIIDrFNap-DS~i~VFLL 316 (2442)
.|.++|..+ ....+.+|||+..-..|+.+.+.+...++ +.+.+.+. ...++..++++|.+. +..-..+|+
T Consensus 509 ~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~ 587 (705)
T TIGR00604 509 NLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLL 587 (705)
T ss_pred HHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEE
Confidence 344444333 33467899999888888888887765432 23334443 226889999999642 111123666
Q ss_pred ee--cccccccCCcc--cCEEEEeCCCC-Cc
Q 000069 317 SI--RAGGVGVNLQA--ADTVIIFDTDW-NP 342 (2442)
Q Consensus 317 ST--RAGGEGLNLQa--ADTVIIYDpPW-NP 342 (2442)
++ ...+||||+.. +..||++-+|+ ||
T Consensus 588 av~gGk~sEGIDf~~~~~r~ViivGlPf~~~ 618 (705)
T TIGR00604 588 SVAGGKVSEGIDFCDDLGRAVIMVGIPYEYT 618 (705)
T ss_pred EecCCcccCccccCCCCCcEEEEEccCCCCC
Confidence 66 57889999986 89999999998 55
No 136
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.64 E-value=5.2e-05 Score=78.69 Aligned_cols=72 Identities=26% Similarity=0.318 Sum_probs=50.7
Q ss_pred hhcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCC-cc-cHHHHHHHhc-ccccEEEEEeccCCCCH
Q 000069 18 IVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN-AS-CKLNADLKHY-QSSHRLLLTGTPLQNNL 89 (2442)
Q Consensus 18 Il~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN-~~-SKLSKALKqL-kSrrRLLLTGTPLQNNL 89 (2442)
+....++|+++||+.+.+......+...+|+++||||+|++.+ .. ......+..+ ...++++|||||.++.-
T Consensus 101 ~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~ 175 (201)
T smart00487 101 LESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIE 175 (201)
T ss_pred HhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHH
Confidence 3344459999999999875544445566789999999999995 33 3333333444 57888999999974433
No 137
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=97.56 E-value=0.00048 Score=82.96 Aligned_cols=107 Identities=12% Similarity=0.062 Sum_probs=92.9
Q ss_pred CCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeC
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFD 337 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYD 337 (2442)
|+.-||||-...-.+.+...|+.+||..-.++..+.+.+|.-.-+.|-.+. ++ +++.|-+.|.||+-+....||+-.
T Consensus 317 gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~e--iq-vivatvafgmgidkpdvrfvihhs 393 (695)
T KOG0353|consen 317 GQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGE--IQ-VIVATVAFGMGIDKPDVRFVIHHS 393 (695)
T ss_pred CCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccc--eE-EEEEEeeecccCCCCCeeEEEecc
Confidence 667799999999999999999999999999999999999888888885543 33 578889999999999999999999
Q ss_pred CCCCccccch-------------------------------------------hhccccccCCcccEEEEEEe
Q 000069 338 TDWNPQVDLQ-------------------------------------------AQARAHRIGQKRDVLVLRFE 367 (2442)
Q Consensus 338 pPWNPardeQ-------------------------------------------AIGRAHRIGQKKEVrVYRLI 367 (2442)
++-+-..|.| --||++|-|++.++.+||=+
T Consensus 394 l~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 394 LPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGF 466 (695)
T ss_pred cchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEech
Confidence 9999988989 56899999999998777654
No 138
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.56 E-value=6.2e-05 Score=79.08 Aligned_cols=67 Identities=28% Similarity=0.430 Sum_probs=47.7
Q ss_pred hhhcCCCcEEEEchHHHhccCCc-----------CcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccC
Q 000069 17 KIVHQKFNVLLTTYEYLMNKHDR-----------PKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPL 85 (2442)
Q Consensus 17 qIl~qKFDVVITTYE~LrKe~DR-----------s~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPL 85 (2442)
.......++++++|+.+...... ..+....+++||+||||++.+... ++.+..+...++|+|||||.
T Consensus 106 ~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 106 ESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp HHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 34456788999999999763211 113345789999999999876442 66665688899999999995
No 139
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.41 E-value=0.028 Score=75.42 Aligned_cols=120 Identities=15% Similarity=0.118 Sum_probs=97.9
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.++.+-+..+.+.|+-|||-|.+...-+.|..+|...|+.+-.|..... .+-..++.+ ++.. ..+-|+|.
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~--AG~~--GaVTIATN 505 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQ--AGRP--GALTIATN 505 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHc--CCCC--CcEEEecc
Confidence 456999999999999999999999999999999999999999999888776543 333445553 3432 34788999
Q ss_pred ccccccCCc-------------------------------------ccCEEEEeCCCCCccccchhhccccccCCcccEE
Q 000069 320 AGGVGVNLQ-------------------------------------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 362 (2442)
Q Consensus 320 AGGEGLNLQ-------------------------------------aADTVIIYDpPWNPardeQAIGRAHRIGQKKEVr 362 (2442)
.+|+|-++. ..=+||.-..+-|-..+.|..||++|.|..-...
T Consensus 506 MAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 506 MAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred CCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 999998874 2347888899999999999999999999987655
Q ss_pred EE
Q 000069 363 VL 364 (2442)
Q Consensus 363 VY 364 (2442)
.|
T Consensus 586 f~ 587 (913)
T PRK13103 586 FY 587 (913)
T ss_pred EE
Confidence 55
No 140
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.35 E-value=0.00076 Score=90.12 Aligned_cols=72 Identities=32% Similarity=0.407 Sum_probs=58.9
Q ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEE-----eCCC---C---Cccccchhhc
Q 000069 282 QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII-----FDTD---W---NPQVDLQAQA 350 (2442)
Q Consensus 282 GIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVII-----YDpP---W---NPardeQAIG 350 (2442)
.+.|...+.+++..+|...-+.|..+.- .+|+||.....|+||. |++||+ ||+. | .|...+|+.|
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~i---qvlvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHI---QVLVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCce---eEEEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 4678889999999999999999976543 3699999999999998 566665 6665 4 4678899999
Q ss_pred cccccCC
Q 000069 351 RAHRIGQ 357 (2442)
Q Consensus 351 RAHRIGQ 357 (2442)
|++|.+-
T Consensus 683 ragrp~~ 689 (1674)
T KOG0951|consen 683 RAGRPQY 689 (1674)
T ss_pred hcCCCcc
Confidence 9999763
No 141
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.32 E-value=0.0064 Score=80.41 Aligned_cols=68 Identities=21% Similarity=0.182 Sum_probs=55.5
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeC-CCCCccccchhhccccccCCc
Q 000069 288 LDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFD-TDWNPQVDLQAQARAHRIGQK 358 (2442)
Q Consensus 288 LDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYD-pPWNPardeQAIGRAHRIGQK 358 (2442)
.+.+++...|..+-=-|+.+.-. +|++|+.++.|||.++-..|+.-| +..||-.|-|+-|||+|-|=.
T Consensus 968 HHaglNr~yR~~VEvLFR~g~L~---VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD 1036 (1330)
T KOG0949|consen 968 HHAGLNRKYRSLVEVLFRQGHLQ---VLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFD 1036 (1330)
T ss_pred cccccchHHHHHHHHHhhcCceE---EEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccc
Confidence 56778888998888889876543 699999999999998655555555 458999999999999999854
No 142
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.31 E-value=0.00075 Score=84.92 Aligned_cols=101 Identities=21% Similarity=0.204 Sum_probs=77.3
Q ss_pred cCCCeEEEEEchHHHHHHHHHHHhhcCc-eEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEE
Q 000069 256 ATDHRVLFFSTMTRLLDVMEDYLTFKQY-RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 334 (2442)
Q Consensus 256 atGhKVLIFSQFtdTLDILED~LrkrGI-kylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVI 334 (2442)
..|+-|+-|+...- . -+...+..+|. +.+.|+|+.+.+-|.+....||++..++.| |++++|.|.|||| ..++||
T Consensus 356 k~GDCvV~FSkk~I-~-~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL-~IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKKDI-F-TVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNL-NIRRII 431 (700)
T ss_pred CCCCeEEEeehhhH-H-HHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeeccccccccc-ceeEEE
Confidence 45777888876422 1 22334444544 599999999999999999999998877766 7777999999998 578899
Q ss_pred EeCCC---------CCccccchhhccccccCCccc
Q 000069 335 IFDTD---------WNPQVDLQAQARAHRIGQKRD 360 (2442)
Q Consensus 335 IYDpP---------WNPardeQAIGRAHRIGQKKE 360 (2442)
||+.- -.-.+..|--||++|.|.+-+
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 98865 234556899999999998744
No 143
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.25 E-value=0.00055 Score=79.82 Aligned_cols=46 Identities=26% Similarity=0.352 Sum_probs=43.5
Q ss_pred EeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCccc
Q 000069 315 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 360 (2442)
Q Consensus 315 LLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKE 360 (2442)
|++|+..|.|+++...|.+|+||.|-.+..|+.|.+|++|.|.+--
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkgl 347 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 347 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccc
Confidence 7788999999999999999999999999999999999999998754
No 144
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.11 E-value=0.003 Score=85.50 Aligned_cols=71 Identities=20% Similarity=0.351 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCc-cc-EEEEEEe
Q 000069 295 GDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK-RD-VLVLRFE 367 (2442)
Q Consensus 295 dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQK-KE-VrVYRLI 367 (2442)
..+..+..+|..++.++.++|++ +..=+|-+-+..+++.+ |-+--.+.++||+.|+.|+=-. ++ -.|..|+
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~-dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~ 650 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVV-DMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFR 650 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEE-ccccccCCccccceEEe-ccccccchHHHHHHHhccCCCCCCCCcEEEECc
Confidence 45556677765566667776665 77779999998888754 6668899999999999998554 33 4455554
No 145
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=97.05 E-value=0.00032 Score=73.51 Aligned_cols=74 Identities=24% Similarity=0.385 Sum_probs=48.4
Q ss_pred hhhcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCc-ccH-HHHHHHhc---ccccEEEEEeccCCCCHHH
Q 000069 17 KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA-SCK-LNADLKHY---QSSHRLLLTGTPLQNNLEE 91 (2442)
Q Consensus 17 qIl~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~-~SK-LSKALKqL---kSrrRLLLTGTPLQNNLeE 91 (2442)
..+..+.+|+|+|+++|........+.-.+.++|||||+|.+... ... ....+..+ ...+.++|||||- .++++
T Consensus 90 ~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 90 EVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp HHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHH
T ss_pred ccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhh
Confidence 334567999999999998743322222234799999999998763 222 33333433 3466899999996 54443
No 146
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.01 Score=79.17 Aligned_cols=110 Identities=16% Similarity=0.172 Sum_probs=78.2
Q ss_pred CCeEEEEEchHHHHHHHHHHHhh----cCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEE
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTF----KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 333 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~Lrk----rGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTV 333 (2442)
..-+|||-.-...++...+.|.. ..+.++-++|..+..+..++ |+......+-++++|..+.++|.+....+|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 45688888777666666666655 45788999999999888774 543333335489999999999999998888
Q ss_pred E--------EeCCCCCc----------cccchhhccccccCCcccEEEEEEecCCCHH
Q 000069 334 I--------IFDTDWNP----------QVDLQAQARAHRIGQKRDVLVLRFETVQTVE 373 (2442)
Q Consensus 334 I--------IYDpPWNP----------ardeQAIGRAHRIGQKKEVrVYRLITedSVE 373 (2442)
| .||+--.- +.-.||-|||+| +.+=.+|||++++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 7 33333222 234577777777 5566889999876554
No 147
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=96.86 E-value=0.0045 Score=82.05 Aligned_cols=130 Identities=12% Similarity=0.158 Sum_probs=103.3
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.++.+-+..+.+.|+-|||.|......++|..+|...|+.+..|+.... +.-..++. +++. ...+.|+|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa--~AG~--~GaVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIA--KAGQ--KGAITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHH--hCCC--CCeEEEecc
Confidence 456999999999888899999999999999999999999999999999988643 22334444 2332 335789999
Q ss_pred ccccccCCcccC--------EEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHH
Q 000069 320 AGGVGVNLQAAD--------TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 379 (2442)
Q Consensus 320 AGGEGLNLQaAD--------TVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILER 379 (2442)
.+|+|.++.-.. +||....+-|-..+.|..||++|.|..-..+.| =|+|+.++.+
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~-----lSLeD~L~r~ 545 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF-----ISLDDQLFRR 545 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE-----EecchHHHHH
Confidence 999999987543 899999999999999999999999998765555 2345555543
No 148
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=96.80 E-value=0.0037 Score=80.79 Aligned_cols=73 Identities=21% Similarity=0.181 Sum_probs=45.2
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEE-----eCC----CCCccccchhhccccccCCc
Q 000069 288 LDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII-----FDT----DWNPQVDLQAQARAHRIGQK 358 (2442)
Q Consensus 288 LDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVII-----YDp----PWNPardeQAIGRAHRIGQK 358 (2442)
.|++.=.--++-+--.|..+- --+|.+|...+-|||.++ .+|+| ||- |-+...|+|.-||++|-|-.
T Consensus 452 HHsGLLPIlKE~IEILFqEGL---vKvLFATETFsiGLNMPA-kTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~D 527 (1041)
T KOG0948|consen 452 HHSGLLPILKEVIEILFQEGL---VKVLFATETFSIGLNMPA-KTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGID 527 (1041)
T ss_pred ccccchHHHHHHHHHHHhccH---HHHHHhhhhhhhccCCcc-eeEEEeeccccCCcceeeecccceEEecccccccCCC
Confidence 344443333333333464432 225889999999999985 44544 331 22567899999999999976
Q ss_pred ccEEEE
Q 000069 359 RDVLVL 364 (2442)
Q Consensus 359 KEVrVY 364 (2442)
..-.|+
T Consensus 528 drGivI 533 (1041)
T KOG0948|consen 528 DRGIVI 533 (1041)
T ss_pred CCceEE
Confidence 543333
No 149
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=96.72 E-value=0.0072 Score=79.23 Aligned_cols=131 Identities=16% Similarity=0.200 Sum_probs=104.6
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.++.+-+.++.+.|+-|||.|......++|..+|...|+++..|..... .+-..++.+ ++. ...+-|+|.
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~--AG~--~gaVTIATN 483 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAE--AGK--YGAVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHh--cCC--CCcEEEEec
Confidence 345899999999888999999999999999999999999999999999987644 344555654 232 234789999
Q ss_pred ccccccCCcc---------------cCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHH
Q 000069 320 AGGVGVNLQA---------------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASA 380 (2442)
Q Consensus 320 AGGEGLNLQa---------------ADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERa 380 (2442)
.+|.|-++.- .=+||.-..+-|-..+.|..||++|.|..-..+.| -|+|+.++.+.
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~-----lSleDdl~~~f 554 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF-----VSLEDDVVAAN 554 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE-----EEcchhHHHhc
Confidence 9999988663 34888889999999999999999999998766555 24566665553
No 150
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=96.63 E-value=0.04 Score=74.16 Aligned_cols=126 Identities=16% Similarity=0.273 Sum_probs=88.3
Q ss_pred HHHHHHHHhhhhhcC--CCeEEEEEchHHHHHHHHHHHh----hcC---ceEEEEeCCCCHHHHHHHHHHHhcCCCCceE
Q 000069 243 KLEMLDRLLPKLKAT--DHRVLFFSTMTRLLDVMEDYLT----FKQ---YRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 313 (2442)
Q Consensus 243 KLEaLdrLL~KLrat--GhKVLIFSQFtdTLDILED~Lr----krG---IkylRLDGSTS~dEReeIIDrFNapDS~i~V 313 (2442)
...++..++..+... ...||||-.-..-+..+.+.|. ... +-+..+++.++..+.+.+ |+.+-..++=
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RK 472 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRK 472 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcch
Confidence 456666666655443 4689999988777777777664 222 566778999998776665 5555566777
Q ss_pred EEeeecccccccCCcccCEEE--------EeCCCCC----------ccccchhhccccccCCcccEEEEEEecCCCHHH
Q 000069 314 FLLSIRAGGVGVNLQAADTVI--------IFDTDWN----------PQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 374 (2442)
Q Consensus 314 FLLSTRAGGEGLNLQaADTVI--------IYDpPWN----------PardeQAIGRAHRIGQKKEVrVYRLITedSVEE 374 (2442)
+|++|..+...|.+..+-+|| .||+.-| -+.-.||.||++|. ..=.+|+|++..-.+.
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeEEeechhhhhh
Confidence 999999999999988766665 3554322 24457999999884 5567888887765443
No 151
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=96.49 E-value=0.018 Score=78.05 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=57.0
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeC---------CCCCccccchhhccccccCC
Q 000069 287 RLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFD---------TDWNPQVDLQAQARAHRIGQ 357 (2442)
Q Consensus 287 RLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYD---------pPWNPardeQAIGRAHRIGQ 357 (2442)
..++++=...|..+-..|..+- .-+|+.|...+.|||++.- +|+++. .+-+|..|.|--||++|-|+
T Consensus 449 vHH~GlLP~~K~~vE~Lfq~GL---vkvvFaTeT~s~GiNmPar-tvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGl 524 (1041)
T COG4581 449 VHHAGLLPAIKELVEELFQEGL---VKVVFATETFAIGINMPAR-TVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGL 524 (1041)
T ss_pred hhccccchHHHHHHHHHHhccc---eeEEeehhhhhhhcCCccc-ceeeeeeEEecCCceeecChhHHHHhhhhhccccc
Confidence 5677777788888888997653 3378999999999999854 444432 23478899999999999999
Q ss_pred cccEEEEEE
Q 000069 358 KRDVLVLRF 366 (2442)
Q Consensus 358 KKEVrVYRL 366 (2442)
...-+|...
T Consensus 525 D~~G~vI~~ 533 (1041)
T COG4581 525 DVLGTVIVI 533 (1041)
T ss_pred cccceEEEe
Confidence 876444444
No 152
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.33 E-value=0.029 Score=75.37 Aligned_cols=130 Identities=12% Similarity=0.153 Sum_probs=102.6
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.++.+-+..+.+.|+-|||-|.+...-+.|..+|...|+.+..|..... ..-..++.+ ++. ...+.|+|.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~--AG~--~g~VTIATN 624 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAG--AGK--LGAVTVATN 624 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHh--cCC--CCcEEEeec
Confidence 346999999988888999999999999999999999999999999999887643 333345543 333 234789999
Q ss_pred ccccccCCcc--------cCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHH
Q 000069 320 AGGVGVNLQA--------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 379 (2442)
Q Consensus 320 AGGEGLNLQa--------ADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILER 379 (2442)
.+|+|.++.- .=+||.-..+-|...+.|..||++|.|..-....| =|+|+.++.+
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~-----lSlEDdL~~~ 687 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF-----LSFEDRLMRL 687 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE-----EEcchHHHHH
Confidence 9999988653 34788889999999999999999999998765554 2345555544
No 153
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.31 E-value=0.0056 Score=73.65 Aligned_cols=144 Identities=20% Similarity=0.275 Sum_probs=81.6
Q ss_pred cCCCcEEEEchHHHhccC-----CcCcccCC-Cc-----c-EEEEcCCcccCCccc------HHHHHHHh----cccccE
Q 000069 20 HQKFNVLLTTYEYLMNKH-----DRPKLSKI-QW-----H-YIIIDEGHRIKNASC------KLNADLKH----YQSSHR 77 (2442)
Q Consensus 20 ~qKFDVVITTYE~LrKe~-----DRs~LsKI-kW-----D-LVIIDEAHRLKN~~S------KLSKALKq----LkSrrR 77 (2442)
..+..|+++||..|+... .+..|.++ .| + +||+||||++||..+ +...++.. +...+.
T Consensus 134 ~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARv 213 (303)
T PF13872_consen 134 RLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARV 213 (303)
T ss_pred CCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcE
Confidence 346679999999998752 23344432 33 3 899999999999654 44444433 445678
Q ss_pred EEEEeccCCCCHHHHHHHHh--hhcC-CCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhh
Q 000069 78 LLLTGTPLQNNLEELWALLN--FLLP-NIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 154 (2442)
Q Consensus 78 LLLTGTPLQNNLeELwSLLN--FLdP-eIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRR 154 (2442)
+..|||.... +..|-.+-+ +-.+ ..|.+...|.+.+.+ ++.. ..+ .+...| ..+..+++|
T Consensus 214 vY~SATgase-p~NmaYm~RLGLWG~gtpf~~~~~f~~a~~~----gGv~------amE----~vA~dl--Ka~G~yiaR 276 (303)
T PF13872_consen 214 VYASATGASE-PRNMAYMSRLGLWGPGTPFPDFDDFLEAMEK----GGVG------AME----MVAMDL--KARGMYIAR 276 (303)
T ss_pred EEecccccCC-CceeeeeeeccccCCCCCCCCHHHHHHHHHh----cCch------HHH----HHHHHH--Hhcchheee
Confidence 9999998643 222211111 1111 234555666555432 1111 000 000111 113344555
Q ss_pred hhhHHhhcCCccEEEEEeccccHHHHHHHHH
Q 000069 155 LKHKVENELPEKIERLVRCEASAYQKLLMKR 185 (2442)
Q Consensus 155 TKKDVekdLP~KvE~VIkceMSaeQRkLYKr 185 (2442)
.. .+-.....++.++|++.|.++|+.
T Consensus 277 ~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 277 QL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred ec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 33 345556778899999999999974
No 154
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.27 E-value=0.12 Score=70.52 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=34.9
Q ss_pred CceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcc
Q 000069 310 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 359 (2442)
Q Consensus 310 ~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKK 359 (2442)
...+++|+|.+...|+++- +|.+|.-= -.-..++||.||++|-|+..
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~~~~--~~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAIADP--SSMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeeeecc--CcHHHHHHHhhcccccccCC
Confidence 4667899999999999974 45554421 12346899999999999864
No 155
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.19 E-value=0.011 Score=64.87 Aligned_cols=82 Identities=20% Similarity=0.265 Sum_probs=56.3
Q ss_pred hcCCCeEEEEEchHHHHHHHHHHHhhcCc--eEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec--ccccccCCcc-
Q 000069 255 KATDHRVLFFSTMTRLLDVMEDYLTFKQY--RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR--AGGVGVNLQA- 329 (2442)
Q Consensus 255 ratGhKVLIFSQFtdTLDILED~LrkrGI--kylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR--AGGEGLNLQa- 329 (2442)
...+.++|||+.....++.+.+++..... .+..+.- ....+..++++|..... .+|+++. ...|||||..
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--ECE
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccC---eEEEEEecccEEEeecCCCc
Confidence 44568999999999999999999976542 1122222 24588999999976433 4788877 8899999985
Q ss_pred -cCEEEEeCCCCC
Q 000069 330 -ADTVIIFDTDWN 341 (2442)
Q Consensus 330 -ADTVIIYDpPWN 341 (2442)
|..||+.-+|+-
T Consensus 81 ~~r~vii~glPfp 93 (167)
T PF13307_consen 81 LLRAVIIVGLPFP 93 (167)
T ss_dssp SEEEEEEES----
T ss_pred hhheeeecCCCCC
Confidence 889999999973
No 156
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.11 E-value=0.0084 Score=65.64 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=45.2
Q ss_pred hhhcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcc-cHHH-HHHHhcc-cccEEEEEeccC
Q 000069 17 KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS-CKLN-ADLKHYQ-SSHRLLLTGTPL 85 (2442)
Q Consensus 17 qIl~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~-SKLS-KALKqLk-SrrRLLLTGTPL 85 (2442)
..+..+.+|+|+|.+.+........+.-.+++++||||+|++.+.. .... ..+..+. ....+++||||-
T Consensus 114 ~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 114 RKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred HHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 3444578999999887765333333334467899999999987543 1222 2233443 466799999986
No 157
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.94 E-value=0.043 Score=72.65 Aligned_cols=87 Identities=22% Similarity=0.353 Sum_probs=71.4
Q ss_pred CceEEEEeCCCCHHH--HHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCC---C---------ccccch
Q 000069 282 QYRYLRLDGHTSGGD--RGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW---N---------PQVDLQ 347 (2442)
Q Consensus 282 GIkylRLDGSTS~dE--ReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPW---N---------PardeQ 347 (2442)
+.+++|+|++++... -+.+++.|+.+..+ |||.|....-|+|+.+...|.++|.|- + .+.+.|
T Consensus 506 ~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Q 582 (730)
T COG1198 506 GARIIRIDSDTTRRKGALEDLLDQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQ 582 (730)
T ss_pred CCcEEEEccccccchhhHHHHHHHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHH
Confidence 789999999886533 56889999888776 899999999999999999998887662 2 256789
Q ss_pred hhccccccCCcccEEEEEEecCCC
Q 000069 348 AQARAHRIGQKRDVLVLRFETVQT 371 (2442)
Q Consensus 348 AIGRAHRIGQKKEVrVYRLITedS 371 (2442)
.-||++|-+-.-.|.|-.+.....
T Consensus 583 vaGRAgR~~~~G~VvIQT~~P~hp 606 (730)
T COG1198 583 VAGRAGRAGKPGEVVIQTYNPDHP 606 (730)
T ss_pred HHhhhccCCCCCeEEEEeCCCCcH
Confidence 999999998888888877766654
No 158
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=95.77 E-value=0.33 Score=63.55 Aligned_cols=113 Identities=18% Similarity=0.213 Sum_probs=75.1
Q ss_pred CeEEEEEchHHHHHHHHHHHhhc----C----ceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCccc
Q 000069 259 HRVLFFSTMTRLLDVMEDYLTFK----Q----YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAA 330 (2442)
Q Consensus 259 hKVLIFSQFtdTLDILED~Lrkr----G----IkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaA 330 (2442)
.-+|||=.-.+.++...+.|... + .-++-++|+.+.++..++ |.......|-++++|..+..-|.+...
T Consensus 259 GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI 335 (674)
T KOG0922|consen 259 GDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGI 335 (674)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecce
Confidence 35788877776666666666432 1 135678999998876655 544444678899999999999998887
Q ss_pred CEEEEe----CCCCCcc-----------ccchhhccccccCCcccEEEEEEecCCCHHH
Q 000069 331 DTVIIF----DTDWNPQ-----------VDLQAQARAHRIGQKRDVLVLRFETVQTVEE 374 (2442)
Q Consensus 331 DTVIIY----DpPWNPa-----------rdeQAIGRAHRIGQKKEVrVYRLITedSVEE 374 (2442)
.+||=- -..|||. .-.||.=|++|-|.+.+-.+|||.++.-++.
T Consensus 336 ~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 336 RYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDK 394 (674)
T ss_pred EEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhh
Confidence 776521 1224441 2234444555555577889999999887643
No 159
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.43 E-value=0.3 Score=66.18 Aligned_cols=86 Identities=14% Similarity=0.230 Sum_probs=64.7
Q ss_pred HHHHHHHhhhhhcCCCeEEEEEch---HHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEee---
Q 000069 244 LEMLDRLLPKLKATDHRVLFFSTM---TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS--- 317 (2442)
Q Consensus 244 LEaLdrLL~KLratGhKVLIFSQF---tdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLS--- 317 (2442)
.+.+.++++++ |.-.|||.+. .+.++.|.++|+.+|++...++.. +.+.++.|..++ +.+++-.
T Consensus 324 ~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~Ge--idvLVGvAsy 393 (1187)
T COG1110 324 LEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGE--VDVLVGVASY 393 (1187)
T ss_pred HHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCc--eeEEEEeccc
Confidence 44555666555 5567999988 889999999999999998888662 367899997765 4454422
Q ss_pred ecccccccCCcc-cCEEEEeCCC
Q 000069 318 IRAGGVGVNLQA-ADTVIIFDTD 339 (2442)
Q Consensus 318 TRAGGEGLNLQa-ADTVIIYDpP 339 (2442)
.-.+=.||||+. ..++|||..|
T Consensus 394 YG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 394 YGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ccceeecCCchhheeEEEEecCC
Confidence 223458999976 9999999988
No 160
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=95.26 E-value=0.045 Score=74.08 Aligned_cols=120 Identities=14% Similarity=0.179 Sum_probs=97.7
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.++.+-+..+.+.|+-|||-|.+...-++|..+|..+|+.+-.|..... ..-..++.+ ++.. -.+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~--AG~~--GaVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAE--AGQP--GTVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHh--cCCC--CcEEEecc
Confidence 346999999999999999999999999999999999999999999888876543 233345543 3322 24788999
Q ss_pred ccccccCCc--------ccCEEEEeCCCCCccccchhhccccccCCcccEEEE
Q 000069 320 AGGVGVNLQ--------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 320 AGGEGLNLQ--------aADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVY 364 (2442)
.+|+|-++. ..=+||.-..+-+...+.|..||++|.|..-..+.|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999998876 356888889999999999999999999997665444
No 161
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.25 E-value=0.072 Score=69.04 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=62.6
Q ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCC----CCCc--------------c
Q 000069 282 QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT----DWNP--------------Q 343 (2442)
Q Consensus 282 GIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDp----PWNP--------------a 343 (2442)
++.++-|+..++.+...++ |......++-+|++|..+.+.|.+....+||=... -||| +
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 5677778887776665544 55556678889999999999999988877773221 1333 2
Q ss_pred ccchhhccccccCCcccEEEEEEecCCCHHHHHH
Q 000069 344 VDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 377 (2442)
Q Consensus 344 rdeQAIGRAHRIGQKKEVrVYRLITedSVEErIL 377 (2442)
.-.||-||++| +.+-.+|||+++++....++
T Consensus 674 nA~QRaGRAGR---t~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 674 NADQRAGRAGR---TGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred cchhhccccCC---CCCcceeeehhhhHHHhhcc
Confidence 33455555555 66788999999988776654
No 162
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=94.86 E-value=0.18 Score=65.59 Aligned_cols=82 Identities=20% Similarity=0.234 Sum_probs=64.1
Q ss_pred hcCCCeEEEEEchHHHHHHHHHHHhhcCce-EEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcc--cC
Q 000069 255 KATDHRVLFFSTMTRLLDVMEDYLTFKQYR-YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA--AD 331 (2442)
Q Consensus 255 ratGhKVLIFSQFtdTLDILED~LrkrGIk-ylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQa--AD 331 (2442)
...+.++|||+.....|..+.++|...... .+...|... +..++++|.+.... .|++.+....||+|+.. +.
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCee
Confidence 345569999999999999999999876653 344445443 44899999876553 68999999999999986 78
Q ss_pred EEEEeCCCCC
Q 000069 332 TVIIFDTDWN 341 (2442)
Q Consensus 332 TVIIYDpPWN 341 (2442)
.||+.-.||=
T Consensus 551 ~vvI~~lPfp 560 (654)
T COG1199 551 LVVIVGLPFP 560 (654)
T ss_pred EEEEEecCCC
Confidence 9999998884
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=94.43 E-value=0.037 Score=61.19 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=35.2
Q ss_pred cCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHH-HHHhc---ccccEEEEEecc
Q 000069 20 HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNA-DLKHY---QSSHRLLLTGTP 84 (2442)
Q Consensus 20 ~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSK-ALKqL---kSrrRLLLTGTP 84 (2442)
.++--|-+++|.++-...-. .....+|++||+||||-.= ..+-..+ .++.+ .....|++||||
T Consensus 70 ~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~D-p~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTD-PTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--S-HHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCC-HHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 34556888899887552211 3345689999999999843 2222222 22222 223679999999
No 164
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.38 E-value=0.084 Score=67.16 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=89.4
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHh----hcC----ceEEEEeCCCCHHHHHHHHHHHhcCCCCc
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQ----YRYLRLDGHTSGGDRGALIDKFNQQDSPF 311 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lr----krG----IkylRLDGSTS~dEReeIIDrFNapDS~i 311 (2442)
.+.|+....+++.++...+-|.|-||..+...+++....+ .-+ -.+..+.|+-...+|.++-...=.+ +.
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G--~L 584 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG--KL 584 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC--ee
Confidence 3457778888888888889999999999887766533322 111 1345677888888888876643233 22
Q ss_pred eEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCC
Q 000069 312 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQ 357 (2442)
Q Consensus 312 ~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQ 357 (2442)
.-+|+|.|+.+||++-.-|.|+++..|++-..+.|..||++|-..
T Consensus 585 -~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 585 -CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred -eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC
Confidence 358899999999999999999999999999999999999999654
No 165
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.24 E-value=0.013 Score=76.62 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=60.7
Q ss_pred HHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccccc
Q 000069 244 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 323 (2442)
Q Consensus 244 LEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGE 323 (2442)
.+.+.+++.... +++|+.+..+..+|...+.. .+.....++..++..|... |..+...+
T Consensus 433 ~~~~~~~~~~~~-----~~~~~v~itty~~l~~~~~~--------~~~l~~~~~~~~v~DEa~~--------ikn~~s~~ 491 (866)
T COG0553 433 REALRDLLKLHL-----VIIFDVVITTYELLRRFLVD--------HGGLKKIEWDRVVLDEAHR--------IKNDQSSE 491 (866)
T ss_pred HHHHHHHhhhcc-----cceeeEEechHHHHHHhhhh--------HHHHhhceeeeeehhhHHH--------HhhhhhHH
Confidence 455555554332 78888888888888775310 1111111111122222110 45577788
Q ss_pred ccCCcccCEEEEeCCCCCccccchhhccccccCCc
Q 000069 324 GVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK 358 (2442)
Q Consensus 324 GLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQK 358 (2442)
|.+|+.+...+.|+++|+| ++|+++|.+++++.
T Consensus 492 ~~~l~~~~~~~~~~LtgTP--len~l~eL~sl~~~ 524 (866)
T COG0553 492 GKALQFLKALNRLDLTGTP--LENRLGELWSLLQE 524 (866)
T ss_pred HHHHHHHhhcceeeCCCCh--HhhhHHHHHHHHHH
Confidence 9999999999999999999 79999999999996
No 166
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=93.09 E-value=0.45 Score=64.23 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=54.1
Q ss_pred ceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEe---CCC-CCccccchhhccccccCC
Q 000069 283 YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIF---DTD-WNPQVDLQAQARAHRIGQ 357 (2442)
Q Consensus 283 IkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIY---DpP-WNPardeQAIGRAHRIGQ 357 (2442)
+.++..+.+.+.++|.-+-..|+.+. + .+|++|..+.-|+||+.-.++|-+ ..+ -.-..|.|.+||++|.|-
T Consensus 523 ~GvAyHhaGLT~eER~~iE~afr~g~--i-~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 523 YGVAYHHAGLTSEEREIIEAAFREGN--I-FVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred ccceecccccccchHHHHHHHHHhcC--e-EEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 45667778888899999888997653 3 357777889999999976665543 222 345789999999999874
No 167
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=93.02 E-value=3.3 Score=56.57 Aligned_cols=84 Identities=10% Similarity=0.093 Sum_probs=67.2
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCC-CHHHHHHHHHHHhcCCCCceEEEeee
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHT-SGGDRGALIDKFNQQDSPFFIFLLSI 318 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGST-S~dEReeIIDrFNapDS~i~VFLLST 318 (2442)
...|+.++.+-+....+.|+-|||-|.....-+.|..+|...|+.+..+.... ....-..+|.+ ++. ...+-|+|
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~--~G~VTIAT 481 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGR--KGSITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCC--CCcEEEec
Confidence 34588888888888889999999999999999999999999999999998874 33444556664 332 23478899
Q ss_pred cccccccCC
Q 000069 319 RAGGVGVNL 327 (2442)
Q Consensus 319 RAGGEGLNL 327 (2442)
..+|+|.++
T Consensus 482 NMAGRGTDI 490 (870)
T CHL00122 482 NMAGRGTDI 490 (870)
T ss_pred cccCCCcCe
Confidence 999999664
No 168
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=92.94 E-value=2.9 Score=56.74 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=95.1
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.+..+-+......|..|||.+.....-.+|...|++.|++...+.-... .|+.-+-.+ ++.. -.+-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~--gaVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQP--GAVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCC--Cccccccc
Confidence 446999999999999999999999999999999999999999999988876655 444444444 3322 23678899
Q ss_pred ccccccCCcccC-----------EEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHH
Q 000069 320 AGGVGVNLQAAD-----------TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 379 (2442)
Q Consensus 320 AGGEGLNLQaAD-----------TVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILER 379 (2442)
.+|+|-+++-.- +||=-..+-+-..+-|--||++|.|-.- ...|+| |+|..++.+
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG-~S~F~l----SleD~L~r~ 551 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPG-SSRFYL----SLEDDLMRR 551 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcc-hhhhhh----hhHHHHHHH
Confidence 999999987422 4555556666666779999999999433 233333 345555444
No 169
>PHA03247 large tegument protein UL36; Provisional
Probab=92.84 E-value=32 Score=51.84 Aligned_cols=286 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred cCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcc----------------ccCccccCCCCCCCCCCCC---------C
Q 000069 566 KSLPTVVSSSAPAVYSTEPPAPLLPPPPPSLDPPQ----------------LQQSKEVTPPSKRGRGRPR---------R 620 (2442)
Q Consensus 566 k~~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~e~~~~~~r~rgrp~---------r 620 (2442)
...+...+++.|.+....++.+.++.+.+...+++ ..++.-..++.-+..+||. |
T Consensus 2605 ~p~p~~papp~P~PP~p~pP~PpPp~~~Ppa~~l~~~~~~a~p~~~~p~~~pa~~~~~~~~r~~p~~~Pa~~s~p~~~p~ 2684 (3151)
T PHA03247 2605 RGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPR 2684 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCceeeccCCC--cccccCCcccccc-ccCCCCCCCCcccccccCCCCccccccCCCCCCCCCCCcCCCCCCCCCC
Q 000069 621 ADKSPVPVVLPAPSG--TVKVEKDAMTGQS-TSASASLPGSTTVSGVSGSAQHVMVGIAPSSQPTTAFVPVAPGSQSASA 697 (2442)
Q Consensus 621 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 697 (2442)
....+.+|.++.... +.+-.++-.+-.. .++..-.++..+.-..+.+..-.-.....+..+.+|...+.+..+.+.+
T Consensus 2685 ~~a~~~pV~s~t~la~PPpp~P~P~P~p~~~~pa~P~ppgP~s~r~asP~~PlpPa~p~~p~~~~~P~~p~ap~~P~~~~ 2764 (3151)
T PHA03247 2685 RRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTA 2764 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCccCCCcccccCCCccccccCcccccccCCCCCCCCCCCCCCCCCCCc---cccccC----CCCCCcccCCCccc
Q 000069 698 CPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQP---QSESLN----PSGGESTATDGNVS 770 (2442)
Q Consensus 698 ~~~~p~~~~~~~~k~~~~~~~P~~~~~~q~~~~pa~~~~i~~~~~~~~~neq~---~~~s~n----ps~~~~~~~~gtvs 770 (2442)
.|+-|....+... .|.++..+....+++.+..-.....+|.-.--. ...... |.|.....++ ..+
T Consensus 2765 ~p~apAPP~aPa~-------~Pap~~~~~~~ap~~~p~~saPsP~~Pa~p~aA~~~p~~~ppp~~~Pa~~~PPPp~-~~P 2836 (3151)
T PHA03247 2765 GPPAPAPPAAPAA-------GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS-AQP 2836 (3151)
T ss_pred CCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_pred CCCCCCCCCCCCcCcccCCcCccCCCCcccccccccC-CCCCCCCCCCCCCCCCCccceeeeccccccccCCCCCCCCCC
Q 000069 771 SIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELN-TNLATAPPVPQPSPQFSSVSMQTKGQSRKTQSGGVTPRRRGK 849 (2442)
Q Consensus 771 S~p~a~~p~s~s~~a~~~~sgt~~~~~~~~~l~s~~~-~p~~s~~~~~q~~~~~psv~~q~KGQ~~KtQsGa~tpRRRGk 849 (2442)
..|..|-+..-+.....+...+.++++.--...+-++ ++.|+.+|...-..|-++.+++..-+-.-..--..+|-..=.
T Consensus 2837 ~aP~pP~~p~~P~~~~~g~~~~~~~~~r~pP~~sp~~~ppaP~~PP~~~l~~P~~~~~t~s~alP~~~~~~p~~Pp~p~P 2916 (3151)
T PHA03247 2837 TAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPP 2916 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCccCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred ccccCCCCcc
Q 000069 850 RQALGSPPIS 859 (2442)
Q Consensus 850 kqa~i~p~vp 859 (2442)
++-+..+|.|
T Consensus 2917 p~P~p~~p~~ 2926 (3151)
T PHA03247 2917 PQPQPQPPPP 2926 (3151)
T ss_pred CCCCCCCCCC
No 170
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.50 E-value=0.06 Score=59.14 Aligned_cols=44 Identities=20% Similarity=0.497 Sum_probs=29.8
Q ss_pred hhhcCCCcEEEEchHHHhccCCcCccc--CCCccEEEEcCCcccCC
Q 000069 17 KIVHQKFNVLLTTYEYLMNKHDRPKLS--KIQWHYIIIDEGHRIKN 60 (2442)
Q Consensus 17 qIl~qKFDVVITTYE~LrKe~DRs~Ls--KIkWDLVIIDEAHRLKN 60 (2442)
+......+|+|++|.+|.....+..+. ...-.+|||||||+|-+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 333455899999999998754333332 23446999999999854
No 171
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.42 E-value=1.6 Score=57.47 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=55.0
Q ss_pred ceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCC------CCc--------------
Q 000069 283 YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD------WNP-------------- 342 (2442)
Q Consensus 283 IkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpP------WNP-------------- 342 (2442)
+-++-|+.+.+.+...++ |...-.+++-++++|..+.+.|.+....+|| ||- |||
T Consensus 507 liv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSK 581 (902)
T KOG0923|consen 507 LIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISK 581 (902)
T ss_pred EEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeech
Confidence 557778889887776655 4333445677899999999988887776665 443 333
Q ss_pred cccchhhccccccCCcccEEEEEEec
Q 000069 343 QVDLQAQARAHRIGQKRDVLVLRFET 368 (2442)
Q Consensus 343 ardeQAIGRAHRIGQKKEVrVYRLIT 368 (2442)
+.-.||.||++|.|-.+ +|||.+
T Consensus 582 AsA~QRaGRAGRtgPGK---CfRLYt 604 (902)
T KOG0923|consen 582 ASANQRAGRAGRTGPGK---CFRLYT 604 (902)
T ss_pred hhhhhhccccCCCCCCc---eEEeec
Confidence 44579999999987655 555555
No 172
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=91.47 E-value=0.34 Score=64.24 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=56.2
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEE--------EeC---------CCC-Ccccc
Q 000069 284 RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI--------IFD---------TDW-NPQVD 345 (2442)
Q Consensus 284 kylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVI--------IYD---------pPW-NPard 345 (2442)
-++-|+.=.+..+..++ |.......+..+++|.++.+.|.+....+|| +|| -.| +-+.-
T Consensus 606 yvLPLYSLLs~~~Q~RV---F~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASa 682 (1172)
T KOG0926|consen 606 YVLPLYSLLSTEKQMRV---FDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASA 682 (1172)
T ss_pred EEeehhhhcCHHHhhhh---ccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeecccc
Confidence 34555555565554444 5555556899999999999999999999988 344 334 34566
Q ss_pred chhhccccccCCcccEEEEEEec
Q 000069 346 LQAQARAHRIGQKRDVLVLRFET 368 (2442)
Q Consensus 346 eQAIGRAHRIGQKKEVrVYRLIT 368 (2442)
-||-||++|+|-. ++|||+.
T Consensus 683 dQRAGRAGRtgpG---HcYRLYS 702 (1172)
T KOG0926|consen 683 DQRAGRAGRTGPG---HCYRLYS 702 (1172)
T ss_pred chhccccCCCCCC---ceeehhh
Confidence 7999999999865 5666654
No 173
>PHA03247 large tegument protein UL36; Provisional
Probab=90.40 E-value=57 Score=49.49 Aligned_cols=272 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCccccCCCCC-CCCCCCCCCCCCCCceeeccCCC-cccccCCccc
Q 000069 568 LPTVVSSSAPAVYSTEPPAPLLPPPPPSLDPPQLQQSKEVTPPSK-RGRGRPRRADKSPVPVVLPAPSG-TVKVEKDAMT 645 (2442)
Q Consensus 568 ~p~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-r~rgrp~r~~~~~~~~~~~~~~~-~~~~~~~~~~ 645 (2442)
.|..+....+.+....++..++..|.....+.+...+.-...|.. ..++||-..-..+.+..+.++.. +-.--+.-..
T Consensus 2709 ~P~p~~~~pa~P~ppgP~s~r~asP~~PlpPa~p~~p~~~~~P~~p~ap~~P~~~~~p~apAPP~aPa~~Pap~~~~~~~ 2788 (3151)
T PHA03247 2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred cccccCCCCCCCCcccccccCCCCccccccCCCCCCCCCCCcCCCCCCCCCCCC-CCCCccCCCcccccCCCccccccCc
Q 000069 646 GQSTSASASLPGSTTVSGVSGSAQHVMVGIAPSSQPTTAFVPVAPGSQSASACP-STPMQPKGRGRRIQSGEQVPRRRGK 724 (2442)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~p~~~~~~~~k~~~~~~~P~~~~~ 724 (2442)
...+-+.++.|..........+......-.+|...|..+.++++...+..+++| ..|.+.-..|.-...|.-..||.=-
T Consensus 2789 ap~~~p~~saPsP~~Pa~p~aA~~~p~~~ppp~~~Pa~~~PPPp~~~P~aP~pP~~p~~P~~~~~g~~~~~~~~~r~pP~ 2868 (3151)
T PHA03247 2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPS 2868 (3151)
T ss_pred CCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCccccCCCC
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCccccccCCCCCCcccCCCcccCCCCCCCCCCCCcC-cccCCcCccCCCCcccccc
Q 000069 725 KIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPS-AVKGQSGTIDPSSAVAALN 803 (2442)
Q Consensus 725 ~q~~~~pa~~~~i~~~~~~~~~neq~~~~s~nps~~~~~~~~gtvsS~p~a~~p~s~s~~-a~~~~sgt~~~~~~~~~l~ 803 (2442)
.+-..-|+.|+..+.. .+-.- .+.....-.+-++..+++...+.+ ......+++-+.+.
T Consensus 2869 ~sp~~~ppaP~~PP~~-------------~l~~P--~~~~~t~s~alP~~~~~~p~~Pp~p~Pp~P~p~~p~~ps----- 2928 (3151)
T PHA03247 2869 RSPAAKPAAPARPPVR-------------RLARP--AVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ----- 2928 (3151)
T ss_pred CCCCCCCCCCCCCCCC-------------CCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----
Q ss_pred cccCCCCCCCCCCCCCCCCCCccceeeeccccccccCCCCCCCCCCccccCCCCcc
Q 000069 804 SELNTNLATAPPVPQPSPQFSSVSMQTKGQSRKTQSGGVTPRRRGKRQALGSPPIS 859 (2442)
Q Consensus 804 s~~~~p~~s~~~~~q~~~~~psv~~q~KGQ~~KtQsGa~tpRRRGkkqa~i~p~vp 859 (2442)
-+++++.|+-++....+++.|...=+-+|---..+.|+-.|-|--.-....+|+.|
T Consensus 2929 p~PP~ppPprP~pp~~P~~~p~~~~~p~~~~p~~~~~~~~~~~~~~pR~~~pp~~p 2984 (3151)
T PHA03247 2929 PQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAP 2984 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccCcccCCCCCCC
No 174
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=90.34 E-value=1.2 Score=48.63 Aligned_cols=54 Identities=19% Similarity=0.388 Sum_probs=36.5
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecc--cccccCCcc--cCEEEEeCCCC
Q 000069 286 LRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA--GGVGVNLQA--ADTVIIFDTDW 340 (2442)
Q Consensus 286 lRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRA--GGEGLNLQa--ADTVIIYDpPW 340 (2442)
+.+.+.. ..+..+++++|+........+|+++.. ..|||||.. +..||+.-+|+
T Consensus 23 i~~e~~~-~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKD-SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCC-CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 3344433 235578999997643211246666665 799999986 88999999886
No 175
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=89.87 E-value=0.19 Score=60.05 Aligned_cols=43 Identities=28% Similarity=0.488 Sum_probs=29.8
Q ss_pred hhhcCCCcEEEEchHHHhccCCcCccc-CCCccEEEEcCCcccC
Q 000069 17 KIVHQKFNVLLTTYEYLMNKHDRPKLS-KIQWHYIIIDEGHRIK 59 (2442)
Q Consensus 17 qIl~qKFDVVITTYE~LrKe~DRs~Ls-KIkWDLVIIDEAHRLK 59 (2442)
+......||+|++|.+|.....+..+. .....+|||||||+|-
T Consensus 206 r~~~~~Adivi~ny~yll~~~~r~~~~~~l~~~~lIiDEAHnL~ 249 (289)
T smart00488 206 RKAIEFANVVVLPYQYLLDPKIRQALSIELKDSIVIFDEAHNLD 249 (289)
T ss_pred HHHhhcCCEEEECHHHHhcHHHHHHhcccccccEEEEeCccChH
Confidence 334467899999999998643222211 2246799999999974
No 176
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=89.87 E-value=0.19 Score=60.05 Aligned_cols=43 Identities=28% Similarity=0.488 Sum_probs=29.8
Q ss_pred hhhcCCCcEEEEchHHHhccCCcCccc-CCCccEEEEcCCcccC
Q 000069 17 KIVHQKFNVLLTTYEYLMNKHDRPKLS-KIQWHYIIIDEGHRIK 59 (2442)
Q Consensus 17 qIl~qKFDVVITTYE~LrKe~DRs~Ls-KIkWDLVIIDEAHRLK 59 (2442)
+......||+|++|.+|.....+..+. .....+|||||||+|-
T Consensus 206 r~~~~~Adivi~ny~yll~~~~r~~~~~~l~~~~lIiDEAHnL~ 249 (289)
T smart00489 206 RKAIEFANVVVLPYQYLLDPKIRQALSIELKDSIVIFDEAHNLD 249 (289)
T ss_pred HHHhhcCCEEEECHHHHhcHHHHHHhcccccccEEEEeCccChH
Confidence 334467899999999998643222211 2246799999999974
No 177
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=89.78 E-value=1.9 Score=47.27 Aligned_cols=48 Identities=23% Similarity=0.348 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcc--cCEEEEeCCCCC
Q 000069 292 TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA--ADTVIIFDTDWN 341 (2442)
Q Consensus 292 TS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQa--ADTVIIYDpPWN 341 (2442)
....+...++++|.....+ .+|+++....||||+.. +..||+.-+||-
T Consensus 31 ~~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPfp 80 (141)
T smart00492 31 EDGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred CChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCCC
Confidence 4444678899999764321 46777777999999986 789999998863
No 178
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=87.75 E-value=4.4 Score=52.04 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=88.4
Q ss_pred hccHHHHHHH-Hhhhhh--cCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEe
Q 000069 240 LCGKLEMLDR-LLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 316 (2442)
Q Consensus 240 sSGKLEaLdr-LL~KLr--atGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLL 316 (2442)
...+++.+.+ +|+.+. ....++|||...---.-.|..+|+..++.|+.++--++..+-.++-..|-.+ ...++|.
T Consensus 279 ~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G--~~~iLL~ 356 (442)
T PF06862_consen 279 PDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG--RKPILLY 356 (442)
T ss_pred hhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC--CceEEEE
Confidence 3457887766 777776 3447899998766555668899999999999999999999999999999766 4567777
Q ss_pred eecccc-cccCCcccCEEEEeCCCCCccccchhhccccccC
Q 000069 317 SIRAGG-VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIG 356 (2442)
Q Consensus 317 STRAGG-EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIG 356 (2442)
+-|+.= .=..+..+.+||+|.+|-+|.-|...+.-+..-.
T Consensus 357 TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~ 397 (442)
T PF06862_consen 357 TERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESS 397 (442)
T ss_pred EhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccc
Confidence 755532 2345667999999999999999988776554433
No 179
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=87.15 E-value=6.7 Score=53.97 Aligned_cols=84 Identities=10% Similarity=0.095 Sum_probs=67.2
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCC-CCHHHHHHHHHHHhcCCCCceEEEeee
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH-TSGGDRGALIDKFNQQDSPFFIFLLSI 318 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGS-TS~dEReeIIDrFNapDS~i~VFLLST 318 (2442)
...|+.++.+-+..+.+.|+-|||-|.....-+.|...|...|+.+-.+... .....-..++.+ ++.. .-+-|+|
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~--GaVTIAT 496 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRK--GAVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCC--CcEEEec
Confidence 3569999998888889999999999999999999999999999999999886 333444556654 3332 2478888
Q ss_pred cccccccCC
Q 000069 319 RAGGVGVNL 327 (2442)
Q Consensus 319 RAGGEGLNL 327 (2442)
..+|+|-++
T Consensus 497 NMAGRGTDI 505 (939)
T PRK12902 497 NMAGRGTDI 505 (939)
T ss_pred cCCCCCcCE
Confidence 999988554
No 180
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=86.03 E-value=15 Score=49.27 Aligned_cols=82 Identities=12% Similarity=0.165 Sum_probs=50.3
Q ss_pred CeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCC-----HHHHHHHHHHHhcCC-CCceEEEeee--cccccccCCcc-
Q 000069 259 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS-----GGDRGALIDKFNQQD-SPFFIFLLSI--RAGGVGVNLQA- 329 (2442)
Q Consensus 259 hKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS-----~dEReeIIDrFNapD-S~i~VFLLST--RAGGEGLNLQa- 329 (2442)
.-|++|...-..+..+..++...|+- .+|.|.-+ .+--.++++.|...- ...-.||++. --++||||+.+
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~ 708 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDD 708 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEeccccccccccccc
Confidence 56888888888888888888766642 12222110 011345666664321 1112455553 34569999997
Q ss_pred -cCEEEEeCCCCC
Q 000069 330 -ADTVIIFDTDWN 341 (2442)
Q Consensus 330 -ADTVIIYDpPWN 341 (2442)
|..||...+||-
T Consensus 709 LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 709 LGRAVVVVGLPYP 721 (821)
T ss_pred cccEEEEeecCCC
Confidence 999999998874
No 181
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=84.90 E-value=4.8 Score=54.50 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=38.5
Q ss_pred cCEEEEeCCCCCccccchhhccccccCCcc---cEEEEEEecCCCHHHHHHHH-HHHHHHHHHhhhcc
Q 000069 330 ADTVIIFDTDWNPQVDLQAQARAHRIGQKR---DVLVLRFETVQTVEEQVRAS-AEHKLGVANQSITA 393 (2442)
Q Consensus 330 ADTVIIYDpPWNPardeQAIGRAHRIGQKK---EVrVYRLITedSVEErILER-aqrKLdLinKVIgA 393 (2442)
-.+||+|+++-++ +-++-+++-.+ ..+||.++..+++|+.-|-. .++-...+.++|..
T Consensus 545 P~yvi~y~~~~~~------vRqiEvYka~~p~~~lkVYfl~y~~S~EeQ~yltSirREk~sFe~LIre 606 (892)
T KOG0442|consen 545 PRYVIMYESDLTF------VRQIEVYKATRPFRSLKVYFLYYGESTEEQRYLTSIRREKASFEKLIRE 606 (892)
T ss_pred CceEEEEcCCCCc------eeeeeeeeccCCCCCceEEEEEecCchHHHHHHHHHHHhHHHHHHHHhh
Confidence 4568999986554 44455555544 46799999999998865444 44445566666654
No 182
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=84.60 E-value=3.1 Score=56.32 Aligned_cols=112 Identities=13% Similarity=0.312 Sum_probs=79.7
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
+..++..++..+ ..|++|-|||......+++++++...+.+++.+++..+..+ ++.| .+++| ++=|.+..
T Consensus 268 ~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W----~~~~V-viYT~~it 337 (824)
T PF02399_consen 268 ETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW----KKYDV-VIYTPVIT 337 (824)
T ss_pred hhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc----cceeE-EEEeceEE
Confidence 334555555443 56899999999999999999999999999999988776552 2334 13455 55568888
Q ss_pred cccCCcc--cCEEEEe--CCCCCccc--cchhhccccccCCcccEEEEE
Q 000069 323 VGVNLQA--ADTVIIF--DTDWNPQV--DLQAQARAHRIGQKRDVLVLR 365 (2442)
Q Consensus 323 EGLNLQa--ADTVIIY--DpPWNPar--deQAIGRAHRIGQKKEVrVYR 365 (2442)
.|+++-. .|.|+.| .....|.. ..|.+||+..+.. ++++||.
T Consensus 338 vG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 338 VGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred EEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 9998854 7778777 33344654 5999999988764 3444443
No 183
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=80.49 E-value=7.5 Score=51.98 Aligned_cols=95 Identities=11% Similarity=0.175 Sum_probs=59.0
Q ss_pred hhcCC-CeEEEEEchHHHHHHHHHHHhhcCceE-EEEeCCCCHHHHHHHHHHHhcCC-CCceEEEeeecccccccCC---
Q 000069 254 LKATD-HRVLFFSTMTRLLDVMEDYLTFKQYRY-LRLDGHTSGGDRGALIDKFNQQD-SPFFIFLLSIRAGGVGVNL--- 327 (2442)
Q Consensus 254 LratG-hKVLIFSQFtdTLDILED~LrkrGIky-lRLDGSTS~dEReeIIDrFNapD-S~i~VFLLSTRAGGEGLNL--- 327 (2442)
+...+ +-.++|+.| ..+..+.+.|.. .+.+ +.+.|..+ .|..++++|.+.. ....-+|+.|....+|||+
T Consensus 466 ~~~~~G~~lvLfTS~-~~~~~~~~~l~~-~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~ 541 (636)
T TIGR03117 466 LRKAQGGTLVLTTAF-SHISAIGQLVEL-GIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHK 541 (636)
T ss_pred HHHcCCCEEEEechH-HHHHHHHHHHHh-hcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCc
Confidence 34344 445555554 555556666643 2223 33445332 5678999997640 0112389999999999999
Q ss_pred -----c--ccCEEEEeCCCCCccccchhhcccccc
Q 000069 328 -----Q--AADTVIIFDTDWNPQVDLQAQARAHRI 355 (2442)
Q Consensus 328 -----Q--aADTVIIYDpPWNPardeQAIGRAHRI 355 (2442)
. .+..|||.-+|+-|..-+ .|+-|+
T Consensus 542 ~~~p~~G~~Ls~ViI~kLPF~~~dp~---a~~~~~ 573 (636)
T TIGR03117 542 PVSPDKDNLLTDLIITCAPFGLNRSL---SMLKRI 573 (636)
T ss_pred cCCCCCCCcccEEEEEeCCCCcCChH---HHHHHH
Confidence 2 388999999998875443 445444
No 184
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=77.53 E-value=1.6 Score=58.98 Aligned_cols=42 Identities=24% Similarity=0.576 Sum_probs=31.9
Q ss_pred hhhcCCCcEEEEchHHHhccCCcCcccCCCc--cEEEEcCCcccC
Q 000069 17 KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQW--HYIIIDEGHRIK 59 (2442)
Q Consensus 17 qIl~qKFDVVITTYE~LrKe~DRs~LsKIkW--DLVIIDEAHRLK 59 (2442)
+.+.++.||+++-|.||++...| ...+++| .+||+||||+|-
T Consensus 217 R~l~edAdIIF~PYnYLiDp~iR-~~~~v~LknsIVIfDEAHNiE 260 (945)
T KOG1132|consen 217 RELKEDADIIFCPYNYLIDPKIR-RSHKVDLKNSIVIFDEAHNIE 260 (945)
T ss_pred hhhcccCcEEEechhhhcCHhhh-ccccccccccEEEEeccccHH
Confidence 55667899999999999975443 2334555 489999999974
No 185
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=76.72 E-value=2.2 Score=56.71 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=28.7
Q ss_pred cCCCcEEEEchHHHhccCCc--CcccCCCccEEEEcCCcccCC
Q 000069 20 HQKFNVLLTTYEYLMNKHDR--PKLSKIQWHYIIIDEGHRIKN 60 (2442)
Q Consensus 20 ~qKFDVVITTYE~LrKe~DR--s~LsKIkWDLVIIDEAHRLKN 60 (2442)
....||+||+|.+|...... ..| -.+++|||||||+|-.
T Consensus 180 a~~AdivItNHalL~~~~~~~~~iL--P~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 180 ARRCRILFCTHAMLGLAFRDKWGLL--PQPDILIVDEAHLFEQ 220 (636)
T ss_pred cccCCEEEECHHHHHHHhhhhcCCC--CCCCEEEEeCCcchHH
Confidence 46789999999999863211 122 2479999999999854
No 186
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.86 E-value=18 Score=47.22 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=71.8
Q ss_pred hhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhh-cCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEee
Q 000069 239 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 317 (2442)
Q Consensus 239 RsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrk-rGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLS 317 (2442)
.-+||-+....++......|.++||.+.....+..+.+.|+. .+..+..++|+++..+|.+...+...++. . |++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~--~-IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEI--L-VVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCC--C-EEEC
Confidence 357899988888888778899999999999888888888864 47889999999999998887776654443 3 4666
Q ss_pred ecccccccCCcccCEEEEeCC
Q 000069 318 IRAGGVGVNLQAADTVIIFDT 338 (2442)
Q Consensus 318 TRAGGEGLNLQaADTVIIYDp 338 (2442)
|+.+- =+-+.....||+-+-
T Consensus 83 Trsal-f~p~~~l~lIIVDEe 102 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDEE 102 (505)
T ss_pred ChHHH-cCcccCCCEEEEECC
Confidence 66532 234566777776553
No 187
>PRK05580 primosome assembly protein PriA; Validated
Probab=75.32 E-value=19 Score=48.56 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=72.7
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhh-cCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeee
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 318 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrk-rGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLST 318 (2442)
-+||......++......|.++||.+.....+..+.+.|+. .|..+..++|+++..+|.+...+...+... |++.|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEec
Confidence 47888888777777667789999999999998888888864 488999999999999988887777555433 56677
Q ss_pred cccccccCCcccCEEEEeCCC
Q 000069 319 RAGGVGVNLQAADTVIIFDTD 339 (2442)
Q Consensus 319 RAGGEGLNLQaADTVIIYDpP 339 (2442)
+..- =+.+.....||+-+-+
T Consensus 249 rsal-~~p~~~l~liVvDEeh 268 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDEEH 268 (679)
T ss_pred cHHh-cccccCCCEEEEECCC
Confidence 6432 2456677777776644
No 188
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=72.88 E-value=9.2 Score=52.55 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=23.7
Q ss_pred CCccEEEEcCCcccCCcc-cHHHHHHHhcccccEEEEEe
Q 000069 45 IQWHYIIIDEGHRIKNAS-CKLNADLKHYQSSHRLLLTG 82 (2442)
Q Consensus 45 IkWDLVIIDEAHRLKN~~-SKLSKALKqLkSrrRLLLTG 82 (2442)
.+|+++||||+|+|.... ..+.+.|.......+++|..
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 478999999999997532 12334444444455555554
No 189
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=70.64 E-value=1.1e+02 Score=41.89 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=63.6
Q ss_pred ccHH-HHHHHHhhhhhcCCCeEEEEEch----HHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEE
Q 000069 241 CGKL-EMLDRLLPKLKATDHRVLFFSTM----TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 315 (2442)
Q Consensus 241 SGKL-EaLdrLL~KLratGhKVLIFSQF----tdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFL 315 (2442)
|||- -++.-++. ....|.++.+-..- .+..+-+..+|...|+++..++|+++...|.+++++...++.+ ++
T Consensus 294 SGKTvVA~laml~-ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---iv 369 (677)
T COG1200 294 SGKTVVALLAMLA-AIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---IV 369 (677)
T ss_pred CCHHHHHHHHHHH-HHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---EE
Confidence 4553 23333333 23456666665533 2445567778888899999999999999999999999776655 67
Q ss_pred eeecc-cccccCCcccCEEEE
Q 000069 316 LSIRA-GGVGVNLQAADTVII 335 (2442)
Q Consensus 316 LSTRA-GGEGLNLQaADTVII 335 (2442)
|.|.| .-+.+++++.-.||+
T Consensus 370 VGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 370 VGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred EEcchhhhcceeecceeEEEE
Confidence 77776 457788888777776
No 190
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=68.99 E-value=7.3 Score=42.93 Aligned_cols=61 Identities=26% Similarity=0.458 Sum_probs=36.0
Q ss_pred hhcCCCcEEEEchHHHhccCCcCcccCC--CccEEEEcCCcccCCcccHHHHHHHh-cccccEEEEEeccCCC
Q 000069 18 IVHQKFNVLLTTYEYLMNKHDRPKLSKI--QWHYIIIDEGHRIKNASCKLNADLKH-YQSSHRLLLTGTPLQN 87 (2442)
Q Consensus 18 Il~qKFDVVITTYE~LrKe~DRs~LsKI--kWDLVIIDEAHRLKN~~SKLSKALKq-LkSrrRLLLTGTPLQN 87 (2442)
.+...++|+++|.....+ ..+..+ .|++||||||-.+.- ...+-- .....+++|-|=|.|-
T Consensus 166 ~~l~~~~vi~~T~~~~~~----~~~~~~~~~~d~vIvDEAsq~~e-----~~~l~~l~~~~~~~vlvGD~~QL 229 (236)
T PF13086_consen 166 FILKEADVIFTTLSSAAS----PFLSNFKEKFDVVIVDEASQITE-----PEALIPLSRAPKRIVLVGDPKQL 229 (236)
T ss_dssp HHHHT-SEEEEETCGGG-----CCGTT-----SEEEETTGGGS-H-----HHHHHHHTTTBSEEEEEE-TTS-
T ss_pred hhcccccccccccccchh----hHhhhhcccCCEEEEeCCCCcch-----HHHHHHHHHhCCEEEEECChhhc
Confidence 334568999999988843 234555 799999999977642 223322 2334889999988764
No 191
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=66.67 E-value=4.2 Score=41.72 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=27.4
Q ss_pred CCccEEEEcCCcccCCcccHHHHHHHhc--ccccEEEEEecc
Q 000069 45 IQWHYIIIDEGHRIKNASCKLNADLKHY--QSSHRLLLTGTP 84 (2442)
Q Consensus 45 IkWDLVIIDEAHRLKN~~SKLSKALKqL--kSrrRLLLTGTP 84 (2442)
..-.+|||||+|++. .......++.+ .....++|.|||
T Consensus 86 ~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 86 RRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp CTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred cCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 334699999999984 24455555554 556679999999
No 192
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=65.53 E-value=8.5 Score=53.53 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=52.8
Q ss_pred ceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccC-----Cc---ccEEEEEEecCCCHHHHH
Q 000069 311 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIG-----QK---RDVLVLRFETVQTVEEQV 376 (2442)
Q Consensus 311 i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIG-----QK---KEVrVYRLITedSVEErI 376 (2442)
...||+|-.|+.+|-+.+++=.+.-+...-+...-.|-+||..|+- .. +++ .+.+++..|.++-.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~-~LTvianesy~dFa 573 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEF-RLNYLIDYDEKDFA 573 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccE-EEEEEeCccHHHHH
Confidence 3458999999999999999999988998889999999999999973 21 346 77777777766544
No 193
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=64.31 E-value=52 Score=45.59 Aligned_cols=45 Identities=20% Similarity=0.153 Sum_probs=40.8
Q ss_pred eEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccC
Q 000069 312 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIG 356 (2442)
Q Consensus 312 ~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIG 356 (2442)
..||.|--|+.||-+=++.=++.=+-..-+-..=.|-+||..|+-
T Consensus 484 lRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 484 LRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred ceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 558999999999999999888888988889999999999999984
No 194
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=63.98 E-value=6.1 Score=48.53 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=21.9
Q ss_pred EEEEchHHHhccCCcCcccCCCccEEEEcCCcccCC
Q 000069 25 VLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 60 (2442)
Q Consensus 25 VVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN 60 (2442)
..+..+..+++...........+|+|||||||||..
T Consensus 62 ~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 62 SDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 344444444442221123345799999999999987
No 195
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=58.04 E-value=11 Score=44.07 Aligned_cols=60 Identities=18% Similarity=0.375 Sum_probs=32.5
Q ss_pred CCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHH
Q 000069 22 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLE 90 (2442)
Q Consensus 22 KFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLe 90 (2442)
+-.|-+....+++- +.+++.+||||||+++.... +...|.++....+|.++|-|.|.+..
T Consensus 102 ~~~Ie~~~~~~iRG-------rt~~~~~iIvDEaQN~t~~~--~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 102 NGKIEIEPLAFIRG-------RTFDNAFIIVDEAQNLTPEE--LKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp TTSEEEEEGGGGTT---------B-SEEEEE-SGGG--HHH--HHHHHTTB-TT-EEEEEE--------
T ss_pred cCeEEEEehhhhcC-------ccccceEEEEecccCCCHHH--HHHHHcccCCCcEEEEecCceeecCC
Confidence 44566666666643 23446899999999986543 55667778888999999999876544
No 196
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=57.88 E-value=55 Score=44.29 Aligned_cols=96 Identities=14% Similarity=0.115 Sum_probs=67.1
Q ss_pred hhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHH----HHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEE
Q 000069 239 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMED----YLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 314 (2442)
Q Consensus 239 RsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED----~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VF 314 (2442)
.-+||-....-.+-.....|.+++|.+.....+..+.+ +|...|+++..++|+++..+|..+++....++.. +
T Consensus 291 TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---I 367 (681)
T PRK10917 291 VGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---I 367 (681)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---E
Confidence 35678765544433334568899999988776665544 4455689999999999999999999988665443 4
Q ss_pred Eeeec-ccccccCCcccCEEEEeC
Q 000069 315 LLSIR-AGGVGVNLQAADTVIIFD 337 (2442)
Q Consensus 315 LLSTR-AGGEGLNLQaADTVIIYD 337 (2442)
++.|. .....+.+.....||+=+
T Consensus 368 vVgT~~ll~~~v~~~~l~lvVIDE 391 (681)
T PRK10917 368 VIGTHALIQDDVEFHNLGLVIIDE 391 (681)
T ss_pred EEchHHHhcccchhcccceEEEec
Confidence 55554 355567777888777633
No 197
>PRK14873 primosome assembly protein PriA; Provisional
Probab=52.71 E-value=57 Score=44.34 Aligned_cols=131 Identities=14% Similarity=-0.002 Sum_probs=85.7
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhc-C-ceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEee
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-Q-YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 317 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrkr-G-IkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLS 317 (2442)
-|||-+.+.+++......|+.+||..--......+...|+.+ | ..+..++...+..+|.+.-.+...+... |+|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~---IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR---VVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc---EEEE
Confidence 479999999999999999999999998888888887777543 4 6799999999999999988887655443 5777
Q ss_pred ecccccccCCcccCEEEEeCCCCCccccchhhcc------ccccCCcccEEEEEEecCCCHHHH
Q 000069 318 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQAR------AHRIGQKRDVLVLRFETVQTVEEQ 375 (2442)
Q Consensus 318 TRAGGEGLNLQaADTVIIYDpPWNPardeQAIGR------AHRIGQKKEVrVYRLITedSVEEr 375 (2442)
|+.+- =+-+.+-..||+.|=+ +...-.|+.=| +...++...+.++.--..-|+|..
T Consensus 247 tRSAv-FaP~~~LgLIIvdEEh-d~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 247 TRSAV-FAPVEDLGLVAIWDDG-DDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred cceeE-EeccCCCCEEEEEcCC-chhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 77652 2233444455554432 22222232222 111233344455444455567754
No 198
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=52.03 E-value=72 Score=42.78 Aligned_cols=96 Identities=15% Similarity=0.062 Sum_probs=65.0
Q ss_pred hhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHH----hhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEE
Q 000069 239 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL----TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 314 (2442)
Q Consensus 239 RsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~L----rkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VF 314 (2442)
.-+||-....-.+-.....|.+++|-+.....+..+.+.| ...|+++..++|+++..+|..+++....++. .++
T Consensus 265 TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~--~Ii 342 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQI--HLV 342 (630)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCC--CEE
Confidence 3567876543333233456789999998887766655544 4458999999999999999999998865543 344
Q ss_pred EeeecccccccCCcccCEEEEe
Q 000069 315 LLSIRAGGVGVNLQAADTVIIF 336 (2442)
Q Consensus 315 LLSTRAGGEGLNLQaADTVIIY 336 (2442)
+.+....-..+.+.....||+=
T Consensus 343 VgT~~ll~~~~~~~~l~lvVID 364 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIID 364 (630)
T ss_pred EecHHHHhccccccccceEEEe
Confidence 4443334456677777777663
No 199
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=51.53 E-value=50 Score=36.40 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=43.2
Q ss_pred HHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHH-hhcC---ceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 244 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL-TFKQ---YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 244 LEaLdrLL~KLratGhKVLIFSQFtdTLDILED~L-rkrG---IkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
..++.+++.+....|+|++|+|.....++.|-+.| .... +...+ .|... ....+ |+|++.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~-~~~~~------------~~~~P---V~i~~~ 78 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGL-AGEPP------------AARQP---VLITWD 78 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEE-TT-SS------------TT--S---EEEE-T
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcc-cCCCC------------CCCCe---EEEecC
Confidence 58889999999999999999999999999999998 2222 22222 22111 01112 555543
Q ss_pred ccccccCCcccCEEEEeCCCC
Q 000069 320 AGGVGVNLQAADTVIIFDTDW 340 (2442)
Q Consensus 320 AGGEGLNLQaADTVIIYDpPW 340 (2442)
.-. -....++.+|+++..+
T Consensus 79 ~~~--~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 79 QEA--NPNNHADVLINLSGEV 97 (137)
T ss_dssp TS------S--SEEEE--SS-
T ss_pred ccc--CCCCCCCEEEECCCCC
Confidence 321 2345599999999887
No 200
>PRK10536 hypothetical protein; Provisional
Probab=48.03 E-value=23 Score=43.14 Aligned_cols=59 Identities=15% Similarity=0.295 Sum_probs=44.2
Q ss_pred CCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCH
Q 000069 22 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNL 89 (2442)
Q Consensus 22 KFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNL 89 (2442)
.-.|-|....+++- ..+.-.+||||||+++.. ......+.++....+++|+|-|-|.++
T Consensus 159 ~~~Iei~~l~ymRG-------rtl~~~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 159 IGKVEIAPFAYMRG-------RTFENAVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred cCcEEEecHHHhcC-------CcccCCEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 34577888888864 123448999999999865 446666778888999999999977553
No 201
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=48.02 E-value=13 Score=49.04 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=28.6
Q ss_pred CCCcEEEEchHHHhccCCcCccc--CCCccEEEEcCCcccCC
Q 000069 21 QKFNVLLTTYEYLMNKHDRPKLS--KIQWHYIIIDEGHRIKN 60 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs~Ls--KIkWDLVIIDEAHRLKN 60 (2442)
...+++|++|.++.......... -..-.++||||||++-+
T Consensus 193 ~~ad~vv~nh~~~~~~~~~~~~~~~~p~~~v~v~DEAH~l~d 234 (654)
T COG1199 193 ENADLVVTNHALLLADVALEESRILLPENDVVVFDEAHNLPD 234 (654)
T ss_pred hhCCEEEEccHHHHhHHHhhhhhccCCcccEEEEeccccchH
Confidence 56899999999998733222222 12467999999999865
No 202
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=46.03 E-value=18 Score=49.48 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=28.0
Q ss_pred CCccEEEEcCCcccCCcc-cHHHHHHHhcccccEEEEEecc
Q 000069 45 IQWHYIIIDEGHRIKNAS-CKLNADLKHYQSSHRLLLTGTP 84 (2442)
Q Consensus 45 IkWDLVIIDEAHRLKN~~-SKLSKALKqLkSrrRLLLTGTP 84 (2442)
.+|+++||||+|+|.+.. ..+.+.|.......+++|+.|=
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd 158 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD 158 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 478999999999997532 2344455555566778888773
No 203
>PF13173 AAA_14: AAA domain
Probab=45.99 E-value=19 Score=38.06 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=26.4
Q ss_pred CccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccC
Q 000069 46 QWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPL 85 (2442)
Q Consensus 46 kWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPL 85 (2442)
+-.+|||||+|++.+....+-..+... ...++++||.-.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccch
Confidence 567999999999987543333333322 456899999853
No 204
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=45.06 E-value=1.5e+02 Score=35.82 Aligned_cols=93 Identities=9% Similarity=0.058 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCcccc
Q 000069 266 TMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVD 345 (2442)
Q Consensus 266 QFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPard 345 (2442)
.|.+..+.|...+.. ++.+..+.++.+.+. ++..+..+....+|+|.-..++.|+.|..--+..++=..-+...+
T Consensus 95 s~~ei~~~l~~~~~~-~~~v~~vNS~~~~~~----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL 169 (239)
T PF10593_consen 95 SWEEIKPELPKAISD-GIEVVVVNSGSSDDS----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTL 169 (239)
T ss_pred CHHHHHHHHHHHHhc-CceEEEEeCCCcccc----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHH
Confidence 455666677777766 788999987665433 333322222357899999999999999887766666554444445
Q ss_pred chhhccc--cccCCcccEEEE
Q 000069 346 LQAQARA--HRIGQKRDVLVL 364 (2442)
Q Consensus 346 eQAIGRA--HRIGQKKEVrVY 364 (2442)
+| .||- +|.|=..-++||
T Consensus 170 ~Q-mgRwFGYR~gY~dl~Ri~ 189 (239)
T PF10593_consen 170 MQ-MGRWFGYRPGYEDLCRIY 189 (239)
T ss_pred HH-HhhcccCCcccccceEEe
Confidence 55 5786 454433346665
No 205
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=44.60 E-value=96 Score=35.31 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=36.6
Q ss_pred hhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHH
Q 000069 239 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 278 (2442)
Q Consensus 239 RsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~L 278 (2442)
....++.++-+|+.+....|+||+|++.....+..|-++|
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~L 49 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNL 49 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999988
No 206
>PLN03025 replication factor C subunit; Provisional
Probab=42.87 E-value=35 Score=41.61 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=33.4
Q ss_pred CCccEEEEcCCcccCCc-ccHHHHHHHhcccccEEEEEeccCCCCHHHHHHH
Q 000069 45 IQWHYIIIDEGHRIKNA-SCKLNADLKHYQSSHRLLLTGTPLQNNLEELWAL 95 (2442)
Q Consensus 45 IkWDLVIIDEAHRLKN~-~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSL 95 (2442)
.+|++|||||+|+|... ...+.+.+..+....+++|+.+....-+..|.+-
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 46899999999998642 2234444555566678888887655444444443
No 207
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=41.94 E-value=1.2e+02 Score=42.90 Aligned_cols=94 Identities=15% Similarity=0.074 Sum_probs=66.3
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhh----cCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEE
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF----KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 315 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrk----rGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFL 315 (2442)
-+||-......+-.....+.+++|.+..+..+....+.|+. .++++..++|.++..++.++++.+..+. +.+++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~--~dIVI 559 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK--IDILI 559 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC--ceEEE
Confidence 45787665554433445678999999999888877766643 4678889999999999999999886654 34444
Q ss_pred eeecccccccCCcccCEEEE
Q 000069 316 LSIRAGGVGVNLQAADTVII 335 (2442)
Q Consensus 316 LSTRAGGEGLNLQaADTVII 335 (2442)
.+.+.....+.+.....||+
T Consensus 560 GTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred chHHHhhCCCCcccCCEEEe
Confidence 44434445567777777766
No 208
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=38.91 E-value=61 Score=44.57 Aligned_cols=82 Identities=17% Similarity=0.134 Sum_probs=66.1
Q ss_pred hhhhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHh-hcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEE
Q 000069 237 IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT-FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 315 (2442)
Q Consensus 237 LIRsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lr-krGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFL 315 (2442)
-+.-|||.+.+.+++.+..+.|+.+||-..-......+.+.|+ ..|.++..++.+.+..+|.+.-.+...+. .+| +
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~--~~v-V 300 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGE--ARV-V 300 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCC--ceE-E
Confidence 3567899999999999999999999999988877777777774 44889999999999999999888886554 444 5
Q ss_pred eeeccc
Q 000069 316 LSIRAG 321 (2442)
Q Consensus 316 LSTRAG 321 (2442)
|.|+.+
T Consensus 301 IGtRSA 306 (730)
T COG1198 301 IGTRSA 306 (730)
T ss_pred EEechh
Confidence 555554
No 209
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=35.84 E-value=62 Score=44.32 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=29.6
Q ss_pred CCccEEEEcCCcccCCc-ccHHHHHHHhcccccEEEEEeccCCCCHHHHHH
Q 000069 45 IQWHYIIIDEGHRIKNA-SCKLNADLKHYQSSHRLLLTGTPLQNNLEELWA 94 (2442)
Q Consensus 45 IkWDLVIIDEAHRLKN~-~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwS 94 (2442)
.+|++|||||+|+|... ...+.+.|.......+++|+.|=...-+.-+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrS 168 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHH
Confidence 36899999999998642 112334444444556677777644444444433
No 210
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=35.07 E-value=5.5e+02 Score=36.83 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=37.1
Q ss_pred EEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcc----cccEEEEEecc
Q 000069 25 VLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ----SSHRLLLTGTP 84 (2442)
Q Consensus 25 VVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLk----SrrRLLLTGTP 84 (2442)
++.+|-+.+.+..+. -....-++|+||.|..--..-.+...++.+. .-+.+|+++|-
T Consensus 475 i~fctvgvllr~~e~---glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatI 535 (1282)
T KOG0921|consen 475 IMFCTVGVLLRMMEN---GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATI 535 (1282)
T ss_pred eeeeccchhhhhhhh---cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhccc
Confidence 677888887764432 2334578999999986544444555555554 34458888883
No 211
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=34.30 E-value=6.1e+02 Score=34.98 Aligned_cols=64 Identities=8% Similarity=0.190 Sum_probs=37.9
Q ss_pred CCCcEEEEchHHHhccCCcC-------ccc-C-CCccEEEEcCCcccCCccc---HHHHHHHhc-ccccEEEEEecc
Q 000069 21 QKFNVLLTTYEYLMNKHDRP-------KLS-K-IQWHYIIIDEGHRIKNASC---KLNADLKHY-QSSHRLLLTGTP 84 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs-------~Ls-K-IkWDLVIIDEAHRLKN~~S---KLSKALKqL-kSrrRLLLTGTP 84 (2442)
..+.|+.++.+.|....... .|. + ...++||||+.|.+.+... .++..+..+ .....|+||+.-
T Consensus 343 ~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 343 PGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred CCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 35788888887665321100 111 1 2468999999999987543 344545443 334557777763
No 212
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=33.74 E-value=18 Score=47.49 Aligned_cols=39 Identities=31% Similarity=0.477 Sum_probs=27.5
Q ss_pred CCcEEEEchHHHhccCCcCcccC--CCccEEEEcCCcccCC
Q 000069 22 KFNVLLTTYEYLMNKHDRPKLSK--IQWHYIIIDEGHRIKN 60 (2442)
Q Consensus 22 KFDVVITTYE~LrKe~DRs~LsK--IkWDLVIIDEAHRLKN 60 (2442)
..+|+|=+|.||....-.....+ -+-.+||+||||+|-|
T Consensus 199 ~~nvivYsYhYllDPkIa~~VSkels~~svVvFDEAHNIDn 239 (755)
T KOG1131|consen 199 FANVIVYSYHYLLDPKIAELVSKELSKESVVVFDEAHNIDN 239 (755)
T ss_pred cccEEEEehhhhcChHHHHHHHHhhCcCcEEEecccccccc
Confidence 47899999999986332222222 1335899999999987
No 213
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=32.56 E-value=3.5e+02 Score=34.80 Aligned_cols=139 Identities=17% Similarity=0.160 Sum_probs=88.1
Q ss_pred hcCCCeEEEE--EchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCE
Q 000069 255 KATDHRVLFF--STMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT 332 (2442)
Q Consensus 255 ratGhKVLIF--SQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADT 332 (2442)
...++||.+. .||...++.+.++|+..|+.+....|.+.. + ... .+|.++-..-+| ..+|.
T Consensus 119 ~~~~r~I~li~t~q~~~~l~~~k~~L~~~g~~v~i~~~~~r~---------~----~~g-qVLGC~~~~~~~---~~~d~ 181 (347)
T COG1736 119 KKGSRRIGLITTAQHVHLLEEVKEILEGRGYEVVIGRGQTRP---------A----YPG-QVLGCNFSVLEG---VDADA 181 (347)
T ss_pred ccCCceEEEEecccchhHHHHHHHHhhcCCeEEEEeCCCCcc---------c----Ccc-eeeccccccCCc---cccce
Confidence 3344556554 489999999999999999977776665530 1 112 356666666667 55888
Q ss_pred EEEeCCCCCccccchhhccccccCCcccEEEEEEecCCC--HHHHHHHHHHHHHHHHHhhhccCccCCCCC---HHHHHH
Q 000069 333 VIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT--VEEQVRASAEHKLGVANQSITAGFFDNNTS---AEDRRE 407 (2442)
Q Consensus 333 VIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedS--VEErILERaqrKLdLinKVIgAGkFDnksS---aEEreE 407 (2442)
+++.-..- -...|+..| +.++|..|......- ++...-....++...+.++++++.|....+ ..-+.+
T Consensus 182 ~l~vg~G~-----FH~lg~~i~--~~~~v~~~dP~s~~~~~~~~~~~~~l~~R~~~i~~a~~a~~~giiv~tk~gQ~r~~ 254 (347)
T COG1736 182 VLYVGSGR-----FHPLGLAIR--TEKPVFAIDPYSGKVREEDPEADRFLRKRYAAISKALDAKSFGIIVSTKGGQRRLE 254 (347)
T ss_pred EEEEcCCc-----cChhhcccc--cCCcEEEEcCCCCceeecchhhhHHHHHHHHHHHHHhcCCeEEEEEecccccCcHH
Confidence 88876642 456677777 677888887765532 233345666777778888888877654332 222344
Q ss_pred HHHHHHHHHh
Q 000069 408 YLESLLRECK 417 (2442)
Q Consensus 408 LLEsLLEe~k 417 (2442)
..+.+.+...
T Consensus 255 ~~~~l~k~~~ 264 (347)
T COG1736 255 VARELVKLLK 264 (347)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 214
>PRK10689 transcription-repair coupling factor; Provisional
Probab=31.76 E-value=2.3e+02 Score=41.19 Aligned_cols=94 Identities=15% Similarity=0.062 Sum_probs=65.4
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhh----cCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEE
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF----KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 315 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrk----rGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFL 315 (2442)
-+||-......+-.....+.+++|.+..+..+..+.+.|.. .++++..+.|..+..++..+++.+..+. +.|++
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~--~dIVV 708 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK--IDILI 708 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC--CCEEE
Confidence 46788765544433445688999999998887777666643 3567888999999999999998886543 34544
Q ss_pred eeecccccccCCcccCEEEE
Q 000069 316 LSIRAGGVGVNLQAADTVII 335 (2442)
Q Consensus 316 LSTRAGGEGLNLQaADTVII 335 (2442)
.+.+.....+++.....+|+
T Consensus 709 gTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 709 GTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred ECHHHHhCCCCHhhCCEEEE
Confidence 44444545567777777776
No 215
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=30.20 E-value=4.2e+02 Score=30.70 Aligned_cols=39 Identities=21% Similarity=0.042 Sum_probs=21.4
Q ss_pred CcccCEEEEeCCCCCcc------ccchhhccccccCCcccEEEEE
Q 000069 327 LQAADTVIIFDTDWNPQ------VDLQAQARAHRIGQKRDVLVLR 365 (2442)
Q Consensus 327 LQaADTVIIYDpPWNPa------rdeQAIGRAHRIGQKKEVrVYR 365 (2442)
-+.||.||+++.++-.. ...+-.--=+|.|+...++.++
T Consensus 196 ~~~aD~vi~l~~~~~~~~~~~~~~~~~l~v~KnR~G~~g~~~l~~ 240 (242)
T cd00984 196 EQDADVVMFLYRDEYYNKESESKGIAEIIVAKNRNGPTGTVELRF 240 (242)
T ss_pred ccCCCEEEEEecccccccccCCCCceEEEEECCCCCCCeeEEEEe
Confidence 35699999998765211 1112222225667766665543
No 216
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=30.07 E-value=37 Score=42.27 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=28.1
Q ss_pred cccCCCccEEEEcCCccc-CCcccHHH---HHHHhccccc--EEEEEecc
Q 000069 41 KLSKIQWHYIIIDEGHRI-KNASCKLN---ADLKHYQSSH--RLLLTGTP 84 (2442)
Q Consensus 41 ~LsKIkWDLVIIDEAHRL-KN~~SKLS---KALKqLkSrr--RLLLTGTP 84 (2442)
.|...+.+++||||.|++ .....+.. .+|+.+.... -+.+-||+
T Consensus 140 llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 140 LLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 467788999999999996 44433333 3344443322 26777885
No 217
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.44 E-value=71 Score=43.63 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=24.4
Q ss_pred CCCccEEEEcCCcccCCcc-cHHHHHHHhcccccEEEEEec
Q 000069 44 KIQWHYIIIDEGHRIKNAS-CKLNADLKHYQSSHRLLLTGT 83 (2442)
Q Consensus 44 KIkWDLVIIDEAHRLKN~~-SKLSKALKqLkSrrRLLLTGT 83 (2442)
..+|+++||||+|+|.... ..+.+.|.....+.+++|..|
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 3479999999999996422 122233333344556777665
No 218
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=27.50 E-value=31 Score=50.37 Aligned_cols=94 Identities=16% Similarity=0.207 Sum_probs=70.3
Q ss_pred EEEEEchHHHHHHHHHHHhhc-CceEEEEeCCCC-----------HHHHHHHHHHHhcCCCCceEEEeeecccccccCCc
Q 000069 261 VLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTS-----------GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQ 328 (2442)
Q Consensus 261 VLIFSQFtdTLDILED~Lrkr-GIkylRLDGSTS-----------~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQ 328 (2442)
-|||+....+.-.+.+.++.. -+....++|... .-.+...+.+|....-+ +|+.|.+.-+|+++.
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln---~L~~~~~~~e~~d~~ 371 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELN---LLIATSVLEEGVDVP 371 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhh---HHHHHHHHHhhcchh
Confidence 478888777766665555332 233333666442 12355678888776655 789999999999999
Q ss_pred ccCEEEEeCCCCCccccchhhccccccCC
Q 000069 329 AADTVIIFDTDWNPQVDLQAQARAHRIGQ 357 (2442)
Q Consensus 329 aADTVIIYDpPWNPardeQAIGRAHRIGQ 357 (2442)
.|+.+|++|.+-+-..+.|+.||+.+.+.
T Consensus 372 ~~~~~~~~~~~~~~~~~vq~~~r~~~~~~ 400 (1606)
T KOG0701|consen 372 KCNLVVLFDAPTYYRSYVQKKGRARAADS 400 (1606)
T ss_pred hhhhheeccCcchHHHHHHhhcccccchh
Confidence 99999999999999999999999977654
No 219
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=26.90 E-value=2.9e+02 Score=27.47 Aligned_cols=57 Identities=19% Similarity=0.040 Sum_probs=38.7
Q ss_pred hccHHHHHHHHhhhhhc--CCCeEEEEEchHHHHHHHHHHHhhcC---ceEEEEeCCCCHHH
Q 000069 240 LCGKLEMLDRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYLTFKQ---YRYLRLDGHTSGGD 296 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLra--tGhKVLIFSQFtdTLDILED~LrkrG---IkylRLDGSTS~dE 296 (2442)
-+||-..+..++..+.. ...++||++........+.+.+.... ..+..+++......
T Consensus 10 G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (144)
T cd00046 10 GSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhH
Confidence 35676666666655543 45799999999988888777764443 77777777655333
No 220
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.71 E-value=74 Score=44.74 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=25.9
Q ss_pred CCccEEEEcCCcccCC-cccHHHHHHHhcccccEEEEEec
Q 000069 45 IQWHYIIIDEGHRIKN-ASCKLNADLKHYQSSHRLLLTGT 83 (2442)
Q Consensus 45 IkWDLVIIDEAHRLKN-~~SKLSKALKqLkSrrRLLLTGT 83 (2442)
.+|+++||||+|+|.. ....+.+.|.......|++|..|
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 4789999999999953 22234444445556667777644
No 221
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.97 E-value=90 Score=41.19 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=25.3
Q ss_pred CCccEEEEcCCcccCCcc-cHHHHHHHhcccccEEEEEecc
Q 000069 45 IQWHYIIIDEGHRIKNAS-CKLNADLKHYQSSHRLLLTGTP 84 (2442)
Q Consensus 45 IkWDLVIIDEAHRLKN~~-SKLSKALKqLkSrrRLLLTGTP 84 (2442)
.+|+++||||+|+|.... ..+.+.|.......+++|..|-
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd 158 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTD 158 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 478999999999996422 2233444444455566666553
No 222
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=23.54 E-value=1e+02 Score=35.39 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=26.0
Q ss_pred CCccEEEEcCCcccCCcccHHHHHHHhccc-ccEEEEEeccCC
Q 000069 45 IQWHYIIIDEGHRIKNASCKLNADLKHYQS-SHRLLLTGTPLQ 86 (2442)
Q Consensus 45 IkWDLVIIDEAHRLKN~~SKLSKALKqLkS-rrRLLLTGTPLQ 86 (2442)
..+++||||||-.+-+.. +...+..+.. ..+|+|-|-|.|
T Consensus 92 ~~~~vliVDEasmv~~~~--~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 92 PKKDVLIVDEASMVDSRQ--LARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp TSTSEEEESSGGG-BHHH--HHHHHHHS-T-T-EEEEEE-TTS
T ss_pred CcccEEEEecccccCHHH--HHHHHHHHHhcCCEEEEECCcch
Confidence 345899999999986433 5555555533 678999999876
No 223
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=23.38 E-value=5.6e+02 Score=32.12 Aligned_cols=86 Identities=22% Similarity=0.291 Sum_probs=60.1
Q ss_pred hhcCCCeEEEEEchHH------HHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCC
Q 000069 254 LKATDHRVLFFSTMTR------LLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 327 (2442)
Q Consensus 254 LratGhKVLIFSQFtd------TLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNL 327 (2442)
+...|+||||..+-.+ ++..+.++|+-++++++.|..-+..+.-+.-+.+|-+ -|
T Consensus 68 ~~~~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval~aPt~~E~~qwY~qRy~~-------------------~l 128 (270)
T COG2326 68 VAETGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVALPAPTDRERGQWYFQRYVA-------------------HL 128 (270)
T ss_pred HHhcCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeecCCCChHhhccHHHHHHHH-------------------hC
Confidence 4567899888887765 5788889998888888888777766666666666632 35
Q ss_pred cccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCH
Q 000069 328 QAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 372 (2442)
Q Consensus 328 QaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSV 372 (2442)
+.+--+++||-.| | +|++ -.+|+-||+....
T Consensus 129 Pa~GeiviFdRSw----Y----nr~g------VeRVmGfct~~q~ 159 (270)
T COG2326 129 PAAGEIVIFDRSW----Y----NRAG------VERVMGFCTPKQY 159 (270)
T ss_pred CCCCeEEEechhh----c----cccC------eeeccccCCHHHH
Confidence 6677889999887 2 2322 2457777765533
No 224
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=23.28 E-value=4.2e+02 Score=27.67 Aligned_cols=58 Identities=7% Similarity=0.010 Sum_probs=40.6
Q ss_pred CCeEEEEEc------hHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEee
Q 000069 258 DHRVLFFST------MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 317 (2442)
Q Consensus 258 GhKVLIFSQ------FtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLS 317 (2442)
.++|+||+. +=.....+.++|..+|+.|..++=......|..+.+..+. ..+..+.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~--~tvP~vfi~ 74 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW--PTIPQLYVK 74 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC--CCCCEEEEC
Confidence 579999975 3356778888899999999988876666777777666533 234344444
No 225
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=23.25 E-value=2.5e+02 Score=36.75 Aligned_cols=91 Identities=12% Similarity=0.180 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchH----HHHHHHHHHHhhcCceEEEE--eCCCCHHHHHHHHHHHhcCCCCceEEEe
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMT----RLLDVMEDYLTFKQYRYLRL--DGHTSGGDRGALIDKFNQQDSPFFIFLL 316 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFt----dTLDILED~LrkrGIkylRL--DGSTS~dEReeIIDrFNapDS~i~VFLL 316 (2442)
+++...+.+.+....++||+||+.|- ....+|..+|+..|..+..+ ..-....- +++++...+.. +|+
T Consensus 21 ~~~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g---~~~~~~~~~~~---liI 94 (491)
T COG0608 21 DMEKAAARIAEAIEKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYG---AIRKLKEEGAD---LII 94 (491)
T ss_pred hHHHHHHHHHHHHHcCCEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccch---HHHHHHhcCCC---EEE
Confidence 45555566666677899999999874 46778899998888554332 22211111 33334333444 788
Q ss_pred eecccccccCCccc-----CEEEEeCCC
Q 000069 317 SIRAGGVGVNLQAA-----DTVIIFDTD 339 (2442)
Q Consensus 317 STRAGGEGLNLQaA-----DTVIIYDpP 339 (2442)
..+.|.-.++-... -.||+.|.+
T Consensus 95 tvD~G~~~~~~i~~~~~~g~~vIVtDHH 122 (491)
T COG0608 95 TVDNGSGSLEEIARAKELGIDVIVTDHH 122 (491)
T ss_pred EECCCcccHHHHHHHHhCCCcEEEECCC
Confidence 88998877765542 677888887
No 226
>PRK04132 replication factor C small subunit; Provisional
Probab=23.07 E-value=83 Score=44.00 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=35.1
Q ss_pred CCccEEEEcCCcccCC-cccHHHHHHHhcccccEEEEEeccCCCCHHHHHH
Q 000069 45 IQWHYIIIDEGHRIKN-ASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWA 94 (2442)
Q Consensus 45 IkWDLVIIDEAHRLKN-~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwS 94 (2442)
.+|.+|||||+|+|.. ....+.+.|..+....+++|+.++...-+.-|.+
T Consensus 629 ~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 629 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 3689999999999964 3334555556667788899998876555444443
No 227
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=23.04 E-value=8e+02 Score=27.48 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=52.1
Q ss_pred hccHHH-HHHHHhhhhhc----CCCeEEEEEchHHHHHHHHHH----HhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 000069 240 LCGKLE-MLDRLLPKLKA----TDHRVLFFSTMTRLLDVMEDY----LTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 310 (2442)
Q Consensus 240 sSGKLE-aLdrLL~KLra----tGhKVLIFSQFtdTLDILED~----LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~ 310 (2442)
.+||-. ++.-++..+.. .+.|+||.+.....+..+... ....++.+..++|+....++...+. ..
T Consensus 46 G~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 119 (203)
T cd00268 46 GSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK------RG 119 (203)
T ss_pred CCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc------CC
Confidence 355643 24444444443 356899999877766655444 4445788889999888655543332 22
Q ss_pred ceEEEeeecc----c-ccccCCcccCEEEEeCCC
Q 000069 311 FFIFLLSIRA----G-GVGVNLQAADTVIIFDTD 339 (2442)
Q Consensus 311 i~VFLLSTRA----G-GEGLNLQaADTVIIYDpP 339 (2442)
+.+++.+... . ..-+++...+.+|+=+.+
T Consensus 120 ~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h 153 (203)
T cd00268 120 PHIVVATPGRLLDLLERGKLDLSKVKYLVLDEAD 153 (203)
T ss_pred CCEEEEChHHHHHHHHcCCCChhhCCEEEEeChH
Confidence 4454444321 1 112556666666543333
No 228
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=22.42 E-value=3.4e+02 Score=27.71 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=39.2
Q ss_pred CCeEEEEEc------hHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEee
Q 000069 258 DHRVLFFST------MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 317 (2442)
Q Consensus 258 GhKVLIFSQ------FtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLS 317 (2442)
.++|+||+. +=.....+.++|...++.|..++=....+.|..+.+.- +...+.++++.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~--g~~tvP~vfi~ 70 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYS--NWPTFPQLYVN 70 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHh--CCCCCCEEEEC
Confidence 579999987 44567788889999999999888655555555555543 22334444444
No 229
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=22.29 E-value=1.8e+02 Score=37.64 Aligned_cols=105 Identities=12% Similarity=0.118 Sum_probs=71.4
Q ss_pred ccHHHHHHHHhhhhhcCCCeEEEEEc-hHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 241 CGKLEMLDRLLPKLKATDHRVLFFST-MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 241 SGKLEaLdrLL~KLratGhKVLIFSQ-FtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
+.-|.++.-.+-.+.+.|++||+... |-.+..++...|++.|+.+..++..........++. +
T Consensus 85 sSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~----~------------ 148 (396)
T COG0626 85 SSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE----P------------ 148 (396)
T ss_pred cCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc----c------------
Confidence 34566666656566667888888765 888899999999999999988887665333332221 1
Q ss_pred ccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHH
Q 000069 320 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 374 (2442)
Q Consensus 320 AGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEE 374 (2442)
-..+|+++.|-||...++=|.++-|+-..+. ..++..||+=-
T Consensus 149 ----------~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g---~~vvVDNTfat 190 (396)
T COG0626 149 ----------NTKLVFLETPSNPLLEVPDIPAIARLAKAYG---ALVVVDNTFAT 190 (396)
T ss_pred ----------CceEEEEeCCCCcccccccHHHHHHHHHhcC---CEEEEECCccc
Confidence 1246888999999988887777777655443 33444565443
No 230
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.23 E-value=1e+02 Score=42.31 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=25.1
Q ss_pred CCccEEEEcCCcccCCc-ccHHHHHHHhcccccEEEEEec
Q 000069 45 IQWHYIIIDEGHRIKNA-SCKLNADLKHYQSSHRLLLTGT 83 (2442)
Q Consensus 45 IkWDLVIIDEAHRLKN~-~SKLSKALKqLkSrrRLLLTGT 83 (2442)
.+|+++||||+|+|... ...+.+.|.......+++|+.|
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 46899999999998642 2233444444444556777765
No 231
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.93 E-value=5e+02 Score=29.63 Aligned_cols=72 Identities=15% Similarity=0.307 Sum_probs=56.1
Q ss_pred HHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhc--CceEE-EEeCCCCHHHHHHHHHHHhcCCCCceEEEee
Q 000069 244 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYL-RLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 317 (2442)
Q Consensus 244 LEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrkr--GIkyl-RLDGSTS~dEReeIIDrFNapDS~i~VFLLS 317 (2442)
..++..++......+.++-++-.....++.+...|+.. ++.++ ..+|-....+...+++..|+...+ ++++.
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pd--iv~vg 108 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPD--IVFVG 108 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCC--EEEEE
Confidence 46777777777777889999999999999999999765 67766 456767888999999999876554 45544
No 232
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=21.52 E-value=5.1e+02 Score=29.58 Aligned_cols=72 Identities=14% Similarity=0.292 Sum_probs=56.1
Q ss_pred HHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhc--CceEEE-EeCCCCHHHHHHHHHHHhcCCCCceEEEee
Q 000069 244 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLR-LDGHTSGGDRGALIDKFNQQDSPFFIFLLS 317 (2442)
Q Consensus 244 LEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrkr--GIkylR-LDGSTS~dEReeIIDrFNapDS~i~VFLLS 317 (2442)
..++..++......+.|+.++-.....++.+.+.|+.. ++.++- .+|-....+...+++..|+...+ +++++
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pd--iv~vg 106 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGAD--ILFVG 106 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCC--EEEEE
Confidence 45677788777777899999999999999999888654 777766 68888888888888888876544 44544
No 233
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=21.12 E-value=87 Score=42.61 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=24.8
Q ss_pred CCccEEEEcCCcccCCcc-cHHHHHHHhcccccEEEEEec
Q 000069 45 IQWHYIIIDEGHRIKNAS-CKLNADLKHYQSSHRLLLTGT 83 (2442)
Q Consensus 45 IkWDLVIIDEAHRLKN~~-SKLSKALKqLkSrrRLLLTGT 83 (2442)
.+|+++||||+|+|.... ..+.+.|.......+++|..|
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC
Confidence 478999999999997522 223344444445556777644
No 234
>PHA00673 acetyltransferase domain containing protein
Probab=20.60 E-value=1.3e+02 Score=34.39 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=36.7
Q ss_pred ccEEEEcCCcccCCcccHHHHHHHhc---ccccEEEEEeccCCCCHH
Q 000069 47 WHYIIIDEGHRIKNASCKLNADLKHY---QSSHRLLLTGTPLQNNLE 90 (2442)
Q Consensus 47 WDLVIIDEAHRLKN~~SKLSKALKqL---kSrrRLLLTGTPLQNNLe 90 (2442)
.+.|.|++.||=+.-..++.+..... ...++|.+||||-.|..+
T Consensus 88 Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 88 TESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 57899999999888888888877655 567899999999888654
No 235
>PF12846 AAA_10: AAA-like domain
Probab=20.41 E-value=87 Score=36.29 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=25.2
Q ss_pred CCCccEEEEcCCcccCCcc---cHHHHHHHhcccccEEEEEec
Q 000069 44 KIQWHYIIIDEGHRIKNAS---CKLNADLKHYQSSHRLLLTGT 83 (2442)
Q Consensus 44 KIkWDLVIIDEAHRLKN~~---SKLSKALKqLkSrrRLLLTGT 83 (2442)
+..+.++++||||++.... ..+...++..+.....++-+|
T Consensus 218 ~~~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~Rk~g~~~~l~t 260 (304)
T PF12846_consen 218 RGRPKIIVIDEAHNFLSNPSGAEFLDELLREGRKYGVGLILAT 260 (304)
T ss_pred CCceEEEEeCCccccccccchhhhhhHHHHHHHhcCCEEEEee
Confidence 4567899999999988752 223344444455555555555
Done!