Query 000069
Match_columns 2442
No_of_seqs 391 out of 2513
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 12:32:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 1.9E-57 6.5E-62 573.7 28.1 383 20-439 343-735 (800)
2 1z3i_X Similar to RAD54-like; 100.0 3.9E-56 1.3E-60 550.5 27.8 369 22-394 170-552 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 1.9E-51 6.4E-56 486.6 25.1 343 21-394 127-477 (500)
4 1z5z_A Helicase of the SNF2/RA 100.0 1.2E-38 4.2E-43 359.5 21.3 231 150-394 12-248 (271)
5 3dmq_A RNA polymerase-associat 100.0 3.5E-35 1.2E-39 378.9 21.7 350 21-392 247-637 (968)
6 1wp9_A ATP-dependent RNA helic 100.0 1.8E-34 6.3E-39 327.9 13.2 346 21-388 100-493 (494)
7 3hgt_A HDA1 complex subunit 3; 100.0 3.1E-30 1.1E-34 300.1 16.7 208 163-379 20-246 (328)
8 4a2p_A RIG-I, retinoic acid in 100.0 8.1E-28 2.8E-32 284.3 19.6 145 240-392 370-529 (556)
9 2fwr_A DNA repair protein RAD2 99.9 4.8E-28 1.7E-32 285.2 13.3 292 22-386 171-470 (472)
10 3tbk_A RIG-I helicase domain; 99.9 3.8E-27 1.3E-31 277.3 18.8 144 240-391 369-527 (555)
11 4a2q_A RIG-I, retinoic acid in 99.9 6.3E-27 2.2E-31 295.4 16.7 145 240-392 611-770 (797)
12 4a2w_A RIG-I, retinoic acid in 99.9 3.2E-26 1.1E-30 294.9 16.6 146 240-393 611-771 (936)
13 2ykg_A Probable ATP-dependent 99.9 5.9E-24 2E-28 261.4 15.3 129 240-375 378-521 (696)
14 4gl2_A Interferon-induced heli 99.9 1.4E-23 4.9E-28 258.1 17.8 144 241-391 380-540 (699)
15 2oca_A DAR protein, ATP-depend 99.9 6.4E-22 2.2E-26 235.5 19.1 257 21-375 203-463 (510)
16 3h1t_A Type I site-specific re 99.9 7.6E-22 2.6E-26 240.2 15.6 111 256-367 437-558 (590)
17 1xti_A Probable ATP-dependent 99.9 2.7E-21 9.4E-26 219.2 18.5 134 242-383 236-369 (391)
18 3eiq_A Eukaryotic initiation f 99.9 8.5E-22 2.9E-26 224.9 11.4 121 243-370 267-387 (414)
19 1hv8_A Putative ATP-dependent 99.8 9.5E-22 3.3E-26 219.6 9.3 120 243-370 226-345 (367)
20 1s2m_A Putative ATP-dependent 99.8 1.1E-20 3.6E-25 216.0 17.1 122 242-370 244-365 (400)
21 2j0s_A ATP-dependent RNA helic 99.8 5.4E-21 1.8E-25 219.6 14.6 121 243-370 263-383 (410)
22 3pey_A ATP-dependent RNA helic 99.8 1.1E-20 3.7E-25 213.1 16.0 118 242-364 229-352 (395)
23 2i4i_A ATP-dependent RNA helic 99.8 6E-20 2.1E-24 210.5 17.8 122 243-370 262-383 (417)
24 2z0m_A 337AA long hypothetical 99.8 3E-20 1E-24 205.7 12.7 116 256-379 218-333 (337)
25 3fht_A ATP-dependent RNA helic 99.8 1.6E-19 5.3E-24 205.8 18.7 133 243-383 253-391 (412)
26 1fuu_A Yeast initiation factor 99.8 5.2E-21 1.8E-25 216.6 5.5 117 243-364 246-362 (394)
27 2db3_A ATP-dependent RNA helic 99.8 3.3E-19 1.1E-23 210.7 20.3 116 243-364 288-403 (434)
28 1oyw_A RECQ helicase, ATP-depe 99.8 5.1E-19 1.7E-23 215.3 17.7 117 243-364 223-339 (523)
29 3oiy_A Reverse gyrase helicase 99.7 2.5E-17 8.7E-22 191.0 16.8 127 243-385 240-376 (414)
30 2v1x_A ATP-dependent DNA helic 99.7 2.1E-17 7.2E-22 204.6 16.2 118 243-364 253-370 (591)
31 3fmp_B ATP-dependent RNA helic 99.7 2.9E-18 1E-22 203.1 5.2 117 243-364 320-442 (479)
32 2hjv_A ATP-dependent RNA helic 99.7 5.8E-17 2E-21 168.4 14.0 134 240-382 19-152 (163)
33 3i5x_A ATP-dependent RNA helic 99.7 6.9E-17 2.4E-21 194.7 16.4 119 256-381 337-458 (563)
34 2jgn_A DBX, DDX3, ATP-dependen 99.7 3.9E-17 1.3E-21 174.3 11.7 126 239-370 28-153 (185)
35 3sqw_A ATP-dependent RNA helic 99.7 7E-17 2.4E-21 197.1 15.2 120 256-382 286-408 (579)
36 1t5i_A C_terminal domain of A 99.7 8.2E-17 2.8E-21 169.5 13.1 119 240-363 15-133 (172)
37 1fuk_A Eukaryotic initiation f 99.7 1.8E-16 6.3E-21 164.6 15.0 123 243-372 17-139 (165)
38 3fho_A ATP-dependent RNA helic 99.7 1.9E-17 6.5E-22 199.8 7.0 118 242-364 343-466 (508)
39 2p6n_A ATP-dependent RNA helic 99.7 1.9E-16 6.5E-21 170.3 11.8 123 240-370 39-161 (191)
40 2rb4_A ATP-dependent RNA helic 99.7 7.8E-16 2.7E-20 161.3 14.6 123 242-371 20-148 (175)
41 2eyq_A TRCF, transcription-rep 99.6 5.7E-16 1.9E-20 204.3 14.6 109 256-369 810-921 (1151)
42 2yjt_D ATP-dependent RNA helic 99.4 3.8E-17 1.3E-21 170.9 0.0 119 241-364 15-133 (170)
43 3eaq_A Heat resistant RNA depe 99.6 3.1E-15 1.1E-19 162.6 13.4 134 240-382 15-148 (212)
44 2xgj_A ATP-dependent RNA helic 99.6 6.2E-15 2.1E-19 192.5 17.7 111 257-370 342-499 (1010)
45 2va8_A SSO2462, SKI2-type heli 99.6 1.5E-14 5.2E-19 180.4 19.8 113 256-371 250-409 (715)
46 3l9o_A ATP-dependent RNA helic 99.6 2.3E-15 7.7E-20 198.1 10.8 122 247-371 429-598 (1108)
47 2p6r_A Afuhel308 helicase; pro 99.6 4E-14 1.4E-18 176.8 18.8 115 256-373 240-391 (702)
48 2zj8_A DNA helicase, putative 99.5 5.4E-14 1.8E-18 176.1 17.9 116 256-374 235-391 (720)
49 3i32_A Heat resistant RNA depe 99.5 3.4E-14 1.2E-18 163.7 14.6 124 240-370 12-135 (300)
50 1gm5_A RECG; helicase, replica 99.5 4.2E-15 1.4E-19 189.8 6.0 108 254-364 574-693 (780)
51 4a4z_A Antiviral helicase SKI2 99.5 7.8E-14 2.7E-18 182.1 14.9 131 242-378 322-500 (997)
52 4ddu_A Reverse gyrase; topoiso 99.4 5E-13 1.7E-17 176.1 16.6 86 243-340 297-388 (1104)
53 2v6i_A RNA helicase; membrane, 99.4 1.4E-13 4.9E-18 163.8 7.4 95 258-360 171-282 (431)
54 2jlq_A Serine protease subunit 99.4 1.2E-13 4.2E-18 165.1 3.5 93 258-358 188-300 (451)
55 1gku_B Reverse gyrase, TOP-RG; 99.3 5.8E-12 2E-16 165.4 14.4 127 244-386 264-468 (1054)
56 1yks_A Genome polyprotein [con 99.3 1.5E-12 5.1E-17 155.7 7.8 93 257-357 176-287 (440)
57 2wv9_A Flavivirin protease NS2 99.3 9.8E-13 3.4E-17 165.8 6.3 99 257-363 409-528 (673)
58 2z83_A Helicase/nucleoside tri 99.3 1.5E-12 5.3E-17 156.2 4.2 104 258-370 190-313 (459)
59 2whx_A Serine protease/ntpase/ 99.3 3.6E-12 1.2E-16 159.3 7.3 103 257-368 354-476 (618)
60 3rc3_A ATP-dependent RNA helic 99.2 1.3E-11 4.4E-16 156.0 9.5 107 261-369 323-444 (677)
61 3o8b_A HCV NS3 protease/helica 99.2 2.1E-11 7.2E-16 153.8 11.0 101 257-372 395-516 (666)
62 2w00_A HSDR, R.ECOR124I; ATP-b 99.2 1.2E-10 4.1E-15 152.9 17.2 108 257-368 536-707 (1038)
63 1c4o_A DNA nucleotide excision 99.2 8.4E-11 2.9E-15 147.9 14.9 125 241-371 422-551 (664)
64 2xau_A PRE-mRNA-splicing facto 99.2 4.2E-11 1.4E-15 153.0 10.1 113 257-372 302-445 (773)
65 2d7d_A Uvrabc system protein B 99.1 3.6E-10 1.2E-14 142.2 17.1 125 241-371 428-557 (661)
66 4f92_B U5 small nuclear ribonu 98.9 1.6E-08 5.3E-13 138.9 19.0 84 284-370 1215-1308(1724)
67 4f92_B U5 small nuclear ribonu 98.8 1.2E-08 4E-13 140.0 14.6 85 284-371 380-474 (1724)
68 1tf5_A Preprotein translocase 98.8 3.6E-09 1.2E-13 136.0 8.9 118 240-362 414-539 (844)
69 3jux_A Protein translocase sub 98.8 1.1E-08 3.9E-13 129.9 11.0 118 240-362 456-581 (822)
70 2fsf_A Preprotein translocase 98.7 1.8E-08 6.2E-13 129.6 9.6 118 240-362 423-577 (853)
71 1nkt_A Preprotein translocase 98.6 3.8E-08 1.3E-12 127.1 10.0 118 240-362 442-611 (922)
72 1rif_A DAR protein, DNA helica 98.1 1.1E-06 3.8E-11 98.4 5.0 75 21-101 203-278 (282)
73 2fz4_A DNA repair protein RAD2 97.8 1.6E-05 5.6E-10 88.2 6.3 63 22-89 171-233 (237)
74 2gxq_A Heat resistant RNA depe 97.5 5.4E-05 1.8E-09 79.8 4.8 68 17-84 115-185 (207)
75 1vec_A ATP-dependent RNA helic 97.5 0.00013 4.3E-09 77.2 6.8 67 18-84 118-187 (206)
76 1q0u_A Bstdead; DEAD protein, 97.4 6.9E-05 2.3E-09 80.6 4.3 70 21-91 125-197 (219)
77 2ipc_A Preprotein translocase 97.4 0.0013 4.3E-08 86.3 15.1 120 240-364 425-694 (997)
78 1t6n_A Probable ATP-dependent 97.4 8.7E-05 3E-09 79.5 3.9 68 20-87 132-203 (220)
79 1wrb_A DJVLGB; RNA helicase, D 97.3 0.00016 5.3E-09 79.5 5.5 68 17-84 145-219 (253)
80 3bor_A Human initiation factor 97.3 0.00013 4.5E-09 79.9 4.7 65 20-84 147-214 (237)
81 2oxc_A Probable ATP-dependent 97.3 0.00016 5.3E-09 78.8 5.0 64 21-84 141-208 (230)
82 1qde_A EIF4A, translation init 97.3 0.00022 7.4E-09 76.5 5.6 64 22-85 131-197 (224)
83 3b6e_A Interferon-induced heli 97.2 0.00012 4.2E-09 77.1 3.2 39 22-60 132-176 (216)
84 3ber_A Probable ATP-dependent 97.2 0.00021 7.2E-09 79.4 4.2 69 17-85 156-228 (249)
85 2pl3_A Probable ATP-dependent 97.1 0.00023 8E-09 77.2 3.7 64 21-84 145-212 (236)
86 3iuy_A Probable ATP-dependent 97.0 0.00043 1.5E-08 74.7 4.6 68 17-84 138-208 (228)
87 3dkp_A Probable ATP-dependent 97.0 0.00057 2E-08 74.6 5.2 65 20-84 147-220 (245)
88 3fe2_A Probable ATP-dependent 96.9 0.0004 1.4E-08 76.1 3.4 68 17-84 147-217 (242)
89 3ly5_A ATP-dependent RNA helic 96.7 0.00074 2.5E-08 75.6 3.3 68 18-85 172-243 (262)
90 2vl7_A XPD; helicase, unknown 96.1 0.0081 2.8E-07 74.4 8.2 93 245-344 370-467 (540)
91 3fmo_B ATP-dependent RNA helic 95.9 0.006 2.1E-07 70.0 5.3 65 20-84 208-277 (300)
92 3llm_A ATP-dependent RNA helic 94.9 0.012 4.1E-07 64.7 3.1 62 21-85 154-219 (235)
93 4a15_A XPD helicase, ATP-depen 93.3 0.13 4.5E-06 65.2 8.4 79 256-341 446-528 (620)
94 3crv_A XPD/RAD3 related DNA he 87.5 0.23 7.7E-06 61.7 2.8 99 245-354 379-486 (551)
95 2vl7_A XPD; helicase, unknown 86.0 0.19 6.5E-06 62.4 0.9 39 21-59 143-188 (540)
96 4a15_A XPD helicase, ATP-depen 74.0 1 3.4E-05 57.3 1.6 40 21-60 174-218 (620)
97 3crv_A XPD/RAD3 related DNA he 66.3 16 0.00054 45.6 9.7 40 21-60 147-187 (551)
98 2orw_A Thymidine kinase; TMTK, 55.2 6.4 0.00022 42.5 3.2 35 46-83 76-111 (184)
99 1gm5_A RECG; helicase, replica 54.8 31 0.001 45.5 9.8 99 239-339 398-500 (780)
100 3oiy_A Reverse gyrase helicase 51.9 45 0.0015 39.2 9.7 98 239-338 45-148 (414)
101 2j48_A Two-component sensor ki 43.1 25 0.00084 32.5 4.6 17 337-353 100-116 (119)
102 3bos_A Putative DNA replicatio 36.1 94 0.0032 32.9 8.3 74 22-96 80-163 (242)
103 3cg4_A Response regulator rece 34.1 1.2E+02 0.004 29.5 8.0 29 258-286 7-35 (142)
104 4ddu_A Reverse gyrase; topoiso 33.6 1E+02 0.0036 42.1 10.1 98 239-338 102-205 (1104)
105 2eyq_A TRCF, transcription-rep 33.4 1.1E+02 0.0037 42.1 10.2 94 240-335 634-731 (1151)
106 3eqz_A Response regulator; str 33.1 90 0.0031 29.8 7.0 96 258-358 27-128 (135)
107 3nhm_A Response regulator; pro 32.3 98 0.0034 29.7 7.1 92 257-354 26-121 (133)
108 3sxu_A DNA polymerase III subu 32.1 1.8E+02 0.0061 31.4 9.6 81 241-340 22-106 (150)
109 2gk6_A Regulator of nonsense t 30.8 41 0.0014 42.8 5.3 58 21-86 318-375 (624)
110 3i42_A Response regulator rece 30.2 50 0.0017 31.6 4.6 93 258-356 27-123 (127)
111 1wp9_A ATP-dependent RNA helic 29.9 1.4E+02 0.0049 34.4 9.1 91 240-337 33-133 (494)
112 4b3f_X DNA-binding protein smu 29.7 35 0.0012 43.4 4.4 59 23-86 343-401 (646)
113 3a10_A Response regulator; pho 28.1 1.2E+02 0.0041 28.4 6.7 15 338-352 100-114 (116)
114 3e1s_A Exodeoxyribonuclease V, 28.0 36 0.0012 43.2 4.1 41 45-87 278-318 (574)
115 1t6n_A Probable ATP-dependent 27.0 2.5E+02 0.0086 29.9 9.8 91 240-335 61-164 (220)
116 3lte_A Response regulator; str 26.2 60 0.0021 31.1 4.4 29 258-286 6-34 (132)
117 2o0j_A Terminase, DNA packagin 26.2 64 0.0022 39.4 5.6 56 41-99 268-326 (385)
118 2l82_A Designed protein OR32; 26.0 1.4E+02 0.0049 31.2 7.3 49 260-308 4-52 (162)
119 3g5j_A Putative ATP/GTP bindin 24.4 73 0.0025 31.5 4.8 51 243-293 74-125 (134)
120 2r2a_A Uncharacterized protein 24.3 36 0.0012 37.7 2.7 38 47-84 88-132 (199)
121 3u61_B DNA polymerase accessor 23.6 30 0.001 39.5 2.0 41 46-86 105-147 (324)
122 3gk5_A Uncharacterized rhodane 23.5 83 0.0028 31.0 4.9 46 247-293 45-90 (108)
123 1xx6_A Thymidine kinase; NESG, 22.7 61 0.0021 35.7 4.2 51 46-99 81-138 (191)
124 2gno_A DNA polymerase III, gam 22.4 44 0.0015 39.1 3.1 38 46-83 82-120 (305)
125 2oxc_A Probable ATP-dependent 22.3 2.8E+02 0.0097 30.0 9.2 89 240-335 71-172 (230)
126 2wjy_A Regulator of nonsense t 22.2 71 0.0024 42.2 5.3 58 21-86 494-551 (800)
127 2b8t_A Thymidine kinase; deoxy 21.6 68 0.0023 36.3 4.3 36 45-83 88-124 (223)
128 3cpe_A Terminase, DNA packagin 21.3 67 0.0023 40.6 4.6 45 42-87 269-316 (592)
129 2b4a_A BH3024; flavodoxin-like 21.1 2.1E+02 0.0071 27.8 7.1 90 258-354 39-130 (138)
130 3n53_A Response regulator rece 21.0 2.7E+02 0.0094 27.0 8.0 22 260-281 5-26 (140)
131 1xti_A Probable ATP-dependent 20.7 3.4E+02 0.012 31.0 9.9 92 240-336 55-159 (391)
132 3fe2_A Probable ATP-dependent 20.6 4.2E+02 0.014 28.9 10.2 73 257-335 101-182 (242)
133 3ipz_A Monothiol glutaredoxin- 20.2 2.4E+02 0.0082 28.0 7.5 58 258-317 17-80 (109)
134 2yxb_A Coenzyme B12-dependent 20.1 1.7E+02 0.0057 31.4 6.7 58 257-319 17-78 (161)
135 2xzl_A ATP-dependent helicase 20.1 80 0.0027 41.8 5.1 63 15-86 491-553 (802)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-57 Score=573.70 Aligned_cols=383 Identities=44% Similarity=0.678 Sum_probs=312.1
Q ss_pred cCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHhhh
Q 000069 20 HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFL 99 (2442)
Q Consensus 20 ~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLNFL 99 (2442)
..+|+|+||||+++.+ +...|..++|++|||||||++||..+++++++..+.+.+||+|||||++|++.|||+||+||
T Consensus 343 ~~~~dvvitTy~~l~~--~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL 420 (800)
T 3mwy_W 343 TMKFNVLLTTYEYILK--DRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFL 420 (800)
T ss_dssp CCCCSEEEECTTHHHH--THHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHH
T ss_pred cccCCEEEecHHHHHh--hHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHh
Confidence 3578999999999988 56678899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEeccccHHH
Q 000069 100 LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQ 179 (2442)
Q Consensus 100 dPeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkceMSaeQ 179 (2442)
.|..|.....|..... . ......+.+|+.+|+||++||++.++...||++.+.+++|.|++.|
T Consensus 421 ~p~~~~~~~~~~~~~~--------~---------~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q 483 (800)
T 3mwy_W 421 MPGRFTIDQEIDFENQ--------D---------EEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQ 483 (800)
T ss_dssp CSCCC---------CC--------T---------THHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHH
T ss_pred CccccCchhhhccccc--------c---------hhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHH
Confidence 9999986655531110 0 1122347789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc----CCCCCcchHHHHHHHHhhcCcccccchhhhhhhccCCCC------CCChhhhhccHHHHHHH
Q 000069 180 KLLMKRVEENLGSI----GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH------YLPPIVRLCGKLEMLDR 249 (2442)
Q Consensus 180 RkLYKrLeenL~Sl----gsskgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~------~l~dLIRsSGKLEaLdr 249 (2442)
+.+|+.+....... .......+++.+++||++|+||+++.............. ....++..++|+.+|.+
T Consensus 484 ~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ 563 (800)
T 3mwy_W 484 TEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQ 563 (800)
T ss_dssp HHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHH
Confidence 99999987653221 112334688999999999999999865544432221111 12345678999999999
Q ss_pred HhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcc
Q 000069 250 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA 329 (2442)
Q Consensus 250 LL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQa 329 (2442)
+|..+...++|+||||+|+.++++|+++|..+|+.|.+|+|+++..+|++++++||.++...++||+||++||+||||+.
T Consensus 564 lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~ 643 (800)
T 3mwy_W 564 LLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT 643 (800)
T ss_dssp HHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTT
T ss_pred HHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred cCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhccCccCCCCCHHHHHHHH
Q 000069 330 ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYL 409 (2442)
Q Consensus 330 ADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIgAGkFDnksSaEEreELL 409 (2442)
|++||+||++|||..++||+||+|||||+++|+||+|++.+|+|++|++++.+|+.+.+.+|+.+..+....
T Consensus 644 a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~-------- 715 (800)
T 3mwy_W 644 ADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKY-------- 715 (800)
T ss_dssp CCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC---------------------
T ss_pred cceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCccccccc--------
Confidence 999999999999999999999999999999999999999999999999999999999999998765433210
Q ss_pred HHHHHHHhhhccCCCCCHHHHHHHHHhChh
Q 000069 410 ESLLRECKKEEAAPVLDDDALNDLLARSES 439 (2442)
Q Consensus 410 EsLLEe~keEEe~eVLDDDELNeLLARSEe 439 (2442)
.....++.++|.+||.....
T Consensus 716 ----------~~~~~~~~~el~~ll~~g~~ 735 (800)
T 3mwy_W 716 ----------TKKNEPNAGELSAILKFGAG 735 (800)
T ss_dssp -------------CCCCHHHHHHHHSSCSS
T ss_pred ----------ccccCCCHHHHHHHHHcchH
Confidence 00123567777777766553
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.9e-56 Score=550.46 Aligned_cols=369 Identities=31% Similarity=0.512 Sum_probs=315.8
Q ss_pred CCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHhhhcC
Q 000069 22 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLP 101 (2442)
Q Consensus 22 KFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLNFLdP 101 (2442)
.++|+||||+.+.+. ...|....|++|||||||++||..++.++++..+.+.+||+|||||++|++.|||+||+|+.|
T Consensus 170 ~~~vvi~ty~~l~~~--~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p 247 (644)
T 1z3i_X 170 PTPILIISYETFRLH--AEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNS 247 (644)
T ss_dssp SCCEEEEEHHHHHHH--TTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHH
T ss_pred CCcEEEeeHHHHHhh--HHHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCC
Confidence 478999999999874 346788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEeccccHHHHH
Q 000069 102 NIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKL 181 (2442)
Q Consensus 102 eIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkceMSaeQRk 181 (2442)
++|++...|..+|..|+.......... .........+.+|+.++++|++||++.++...||++.+++++|+|++.|+.
T Consensus 248 ~~l~~~~~F~~~f~~pi~~~~~~~~~~--~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~ 325 (644)
T 1z3i_X 248 GILGTAQEFKKRFEIPILKGRDADASD--KDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKE 325 (644)
T ss_dssp HHHCCHHHHHHHTHHHHHHHHSTTCCS--HHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHH
T ss_pred CcCCCHHHHHHhhcchhhhcCCcCCCH--HHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHH
Confidence 999999999999988765443322111 112233445788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccC----CCCCcchHHHHHHHHhhcCcccccchhhhhh-------hccCCCCCC--ChhhhhccHHHHHH
Q 000069 182 LMKRVEENLGSIG----NSKGRSVHNSVMELRNICNHPYLSQLHAEEV-------DTLIPKHYL--PPIVRLCGKLEMLD 248 (2442)
Q Consensus 182 LYKrLeenL~Slg----sskgrsLlNiLMQLRKICNHPyLfqleeEEV-------EeLipe~~l--~dLIRsSGKLEaLd 248 (2442)
+|+.+........ .......+..++.||++|+||++........ ...++..+. ......++|+.+|.
T Consensus 326 lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~ 405 (644)
T 1z3i_X 326 LYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLD 405 (644)
T ss_dssp HHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHH
Confidence 9999876543221 1223456788999999999999864321110 111111111 11235689999999
Q ss_pred HHhhhhhc-CCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCC
Q 000069 249 RLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 327 (2442)
Q Consensus 249 rLL~KLra-tGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNL 327 (2442)
.+|..+.. .++|+||||+|+.++++|+.+|...|+.|.+++|+++..+|++++++||.++...++||++|++||+||||
T Consensus 406 ~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl 485 (644)
T 1z3i_X 406 YILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNL 485 (644)
T ss_dssp HHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCC
T ss_pred HHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccc
Confidence 99998864 58999999999999999999999999999999999999999999999998877778999999999999999
Q ss_pred cccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhccC
Q 000069 328 QAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 394 (2442)
Q Consensus 328 QaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIgAG 394 (2442)
+.|++||+||++|||..+.||+||+||+||++.|+||+|++.+|+|++|++++..|+.+++.+++.+
T Consensus 486 ~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~ 552 (644)
T 1z3i_X 486 IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEE 552 (644)
T ss_dssp TTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCS
T ss_pred ccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999988764
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.9e-51 Score=486.58 Aligned_cols=343 Identities=31% Similarity=0.557 Sum_probs=297.8
Q ss_pred CCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHhhhc
Q 000069 21 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLL 100 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLNFLd 100 (2442)
.+++|+||||+.+.+.. .+....|++|||||||+++|..+++++++..+.+.+||+|||||++|++.|||++++||.
T Consensus 127 ~~~~ivi~t~~~l~~~~---~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~ 203 (500)
T 1z63_A 127 EDYDIILTTYAVLLRDT---RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLN 203 (500)
T ss_dssp GGSSEEEEEHHHHTTCH---HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHS
T ss_pred cCCcEEEeeHHHHhccc---hhcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhC
Confidence 46889999999998732 377889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhH--HhhcCCccEEEEEeccccHH
Q 000069 101 PNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHK--VENELPEKIERLVRCEASAY 178 (2442)
Q Consensus 101 PeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKD--VekdLP~KvE~VIkceMSae 178 (2442)
|..|.+...|..+|..++.... .....+|+.++.++++||++.+ +...||++.+..++|+|++.
T Consensus 204 p~~~~~~~~f~~~~~~~~~~~~--------------~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~ 269 (500)
T 1z63_A 204 PGLLGSYSEFKSKFATPIKKGD--------------NMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPE 269 (500)
T ss_dssp TTTTCCHHHHHTTTHHHHHTTC--------------HHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHH
T ss_pred CCcCCCHHHHHHHhcccccccc--------------HHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHH
Confidence 9999999999998887655321 1234678999999999999975 67789999999999999999
Q ss_pred HHHHHHHHHHHhccc-CCC----CCcchHHHHHHHHhhcCcccccchhhhhhhccCCCCCCChhhhhccHHHHHHHHhhh
Q 000069 179 QKLLMKRVEENLGSI-GNS----KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPK 253 (2442)
Q Consensus 179 QRkLYKrLeenL~Sl-gss----kgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~~l~dLIRsSGKLEaLdrLL~K 253 (2442)
|+.+|+.+....... ... ....++..+++||++|+||.+.... ......++|+..|.++|..
T Consensus 270 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~-------------~~~~~~s~K~~~l~~~l~~ 336 (500)
T 1z63_A 270 QAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG-------------EQSVRRSGKMIRTMEIIEE 336 (500)
T ss_dssp HHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCS-------------CCCSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCc-------------cchhhcchhHHHHHHHHHH
Confidence 999999886654321 111 1224677889999999999886421 1234568899999999999
Q ss_pred hhcCCCeEEEEEchHHHHHHHHHHHhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCE
Q 000069 254 LKATDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT 332 (2442)
Q Consensus 254 LratGhKVLIFSQFtdTLDILED~Lrkr-GIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADT 332 (2442)
+...++|+|||+++..++++|.++|... |+.+.+++|+++..+|.+++++|+.+. .+++||++|+++++||||+.|++
T Consensus 337 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~-~~~vil~st~~~~~Glnl~~~~~ 415 (500)
T 1z63_A 337 ALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNP-SVKFIVLSVKAGGFGINLTSANR 415 (500)
T ss_dssp HHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCT-TCCCCEEECCCC-CCCCCTTCSE
T ss_pred HHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCC-CCCEEEEecccccCCCchhhCCE
Confidence 9889999999999999999999999875 999999999999999999999998753 35688999999999999999999
Q ss_pred EEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHhhhccC
Q 000069 333 VIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 394 (2442)
Q Consensus 333 VIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKLdLinKVIgAG 394 (2442)
||+||++|||..++||+||+||+||+++|+||+|++.+|+|++|++++..|..+++.+++.+
T Consensus 416 vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~ 477 (500)
T 1z63_A 416 VIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSG 477 (500)
T ss_dssp EEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGST
T ss_pred EEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999764
No 4
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=1.2e-38 Score=359.46 Aligned_cols=231 Identities=28% Similarity=0.427 Sum_probs=177.6
Q ss_pred hhhhhhhhHHhhcCCccEEEEEeccccHHHHHHHHHHHHHhcc-cCCCC----CcchHHHHHHHHhhcCcccccchhhhh
Q 000069 150 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGS-IGNSK----GRSVHNSVMELRNICNHPYLSQLHAEE 224 (2442)
Q Consensus 150 FMLRRTKKDVekdLP~KvE~VIkceMSaeQRkLYKrLeenL~S-lgssk----grsLlNiLMQLRKICNHPyLfqleeEE 224 (2442)
--+||+|++|..+||++.+++++|+|++.|+.+|+.+...... ..... ...+++.+++||++|+||+++...
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~--- 88 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG--- 88 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCS---
T ss_pred ccccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCC---
Confidence 4589999999999999999999999999999999998765422 21111 234678899999999999986411
Q ss_pred hhccCCCCCCChhhhhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhc-CceEEEEeCCCCHHHHHHHHHH
Q 000069 225 VDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSGGDRGALIDK 303 (2442)
Q Consensus 225 VEeLipe~~l~dLIRsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrkr-GIkylRLDGSTS~dEReeIIDr 303 (2442)
..+...++|+..|.++|..+...++|+||||+|+.++++|..+|... |+.+.+++|+++..+|.+++++
T Consensus 89 ----------~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~ 158 (271)
T 1z5z_A 89 ----------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISK 158 (271)
T ss_dssp ----------CCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHH
T ss_pred ----------ccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHH
Confidence 12356789999999999999889999999999999999999999885 9999999999999999999999
Q ss_pred HhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHH
Q 000069 304 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 383 (2442)
Q Consensus 304 FNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrK 383 (2442)
|+.+. .++|||++|+++|+||||+.|++||+||+||||..+.||+||+||+||+++|+||+|++.+|+|++|++++..|
T Consensus 159 F~~~~-~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K 237 (271)
T 1z5z_A 159 FQNNP-SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFK 237 (271)
T ss_dssp HHHCT-TCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHC
T ss_pred hcCCC-CCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHH
Confidence 98753 46689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccC
Q 000069 384 LGVANQSITAG 394 (2442)
Q Consensus 384 LdLinKVIgAG 394 (2442)
..+++.+++.+
T Consensus 238 ~~l~~~~~~~~ 248 (271)
T 1z5z_A 238 RSLFKDIISSG 248 (271)
T ss_dssp HHHHTTGGGGT
T ss_pred HHHHHHHHccC
Confidence 99999999864
No 5
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.5e-35 Score=378.90 Aligned_cols=350 Identities=18% Similarity=0.209 Sum_probs=257.1
Q ss_pred CCCcEEEEchHHHhccCCc-CcccCCCccEEEEcCCcccCCcccH---HHHHHHhc--ccccEEEEEeccCCCCHHHHHH
Q 000069 21 QKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNASCK---LNADLKHY--QSSHRLLLTGTPLQNNLEELWA 94 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DR-s~LsKIkWDLVIIDEAHRLKN~~SK---LSKALKqL--kSrrRLLLTGTPLQNNLeELwS 94 (2442)
..++|+|+||+.+.+..+. ..+...+|++|||||||+++|..++ .++.+..+ ...++|+|||||++|++.|+|+
T Consensus 247 ~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~s 326 (968)
T 3dmq_A 247 DTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFA 326 (968)
T ss_dssp TTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHH
T ss_pred ccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHH
Confidence 4679999999999874332 3467789999999999999987654 48888877 6788999999999999999999
Q ss_pred HHhhhcCCCCCChHHHHHHhcCccc---------cCCCCCchh-----hhhH---------------HHHHHHHHHHHHH
Q 000069 95 LLNFLLPNIFNSSEDFSQWFNKPFE---------SNGDNSPDE-----ALLS---------------EEENLLIINRLHQ 145 (2442)
Q Consensus 95 LLNFLdPeIFnS~e~FeEwFnKPfe---------~~g~~s~dE-----aeLS---------------EEEkllIIkRLhK 145 (2442)
+|+|+.|..|.+...|..++..... ......... ..+. ..........+..
T Consensus 327 ll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 406 (968)
T 3dmq_A 327 RLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSM 406 (968)
T ss_dssp HHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHH
T ss_pred HHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHH
Confidence 9999999999999888876432110 000000000 0000 0000000112222
Q ss_pred hh-----hhhhhhhhhhHHhhcCCccEEEEEeccccHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHhhcCcccccch
Q 000069 146 VL-----RPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQL 220 (2442)
Q Consensus 146 LL-----RPFMLRRTKKDVekdLP~KvE~VIkceMSaeQRkLYKrLeenL~SlgsskgrsLlNiLMQLRKICNHPyLfql 220 (2442)
++ ..+++|+++..+. .+|.+..+.+.+.++..++.+|+........ ....... .. +.+|.....
T Consensus 407 lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~-~l~pe~~~~ 475 (968)
T 3dmq_A 407 LMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKVSGIMGAR--KSAEDRA-------RD-MLYPERIYQ 475 (968)
T ss_dssp HGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHHHHHTTCC--SSGGGGT-------HH-HHCSGGGTT
T ss_pred HHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHHHHHHHhhhhhh--hhhHHHH-------hh-hcChHHHHH
Confidence 22 3456666666664 6899999999999999998888764332110 0000000 01 111211110
Q ss_pred hhhhhhccCCCCCCChhhhhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhh-cCceEEEEeCCCCHHHHHH
Q 000069 221 HAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGA 299 (2442)
Q Consensus 221 eeEEVEeLipe~~l~dLIRsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrk-rGIkylRLDGSTS~dERee 299 (2442)
.+.. .....+..+.|+.+|.++|.. ..++|+||||++..+++.|..+|.. .|+++..++|+++..+|.+
T Consensus 476 -------~l~~-~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~ 545 (968)
T 3dmq_A 476 -------EFEG-DNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDR 545 (968)
T ss_dssp -------TTTS-SSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHH
T ss_pred -------Hhhh-hhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 0000 112345667899999999986 5688999999999999999999984 6999999999999999999
Q ss_pred HHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHH
Q 000069 300 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 379 (2442)
Q Consensus 300 IIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILER 379 (2442)
++++|+.++..+ .+|++|+++++||||+.|++||+||++|||..+.||+||++|+||++.|+||+++..+++|++|+..
T Consensus 546 ~l~~F~~g~~~~-~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~ 624 (968)
T 3dmq_A 546 AAAWFAEEDTGA-QVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRW 624 (968)
T ss_dssp HHHHHHSTTSSC-EEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHH
T ss_pred HHHHHhCCCCcc-cEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHH
Confidence 999998775334 4678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 000069 380 AEHKLGVANQSIT 392 (2442)
Q Consensus 380 aqrKLdLinKVIg 392 (2442)
+.+|+.++...+.
T Consensus 625 ~~~k~~~~~~~~~ 637 (968)
T 3dmq_A 625 YHEGLDAFEHTCP 637 (968)
T ss_dssp HHHTTCCSSSCCS
T ss_pred HHhCCCceecCCC
Confidence 9998776655443
No 6
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-34 Score=327.94 Aligned_cols=346 Identities=15% Similarity=0.166 Sum_probs=216.6
Q ss_pred CCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccH--HHHHHH-hcccccEEEEEeccCCCCHHHHHHHHh
Q 000069 21 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK--LNADLK-HYQSSHRLLLTGTPLQNNLEELWALLN 97 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SK--LSKALK-qLkSrrRLLLTGTPLQNNLeELwSLLN 97 (2442)
.+++|+|+||+.+.+......+...+|++|||||||++++.... ....+. .....++|+|||||. |+..+++.+++
T Consensus 100 ~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~ 178 (494)
T 1wp9_A 100 ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVIN 178 (494)
T ss_dssp HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHH
T ss_pred cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHH
Confidence 46899999999998755444566778999999999999975322 222222 235688999999999 77888888888
Q ss_pred hhcCCCCC---ChHH-HHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEE-EEEe
Q 000069 98 FLLPNIFN---SSED-FSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIE-RLVR 172 (2442)
Q Consensus 98 FLdPeIFn---S~e~-FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE-~VIk 172 (2442)
++....+. .... +..++.... .......+.. ....+...+.+++.+|++......+..... .+-.
T Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (494)
T 1wp9_A 179 NLGIEHIEYRSENSPDVRPYVKGIR-----FEWVRVDLPE-----IYKEVRKLLREMLRDALKPLAETGLLESSSPDIPK 248 (494)
T ss_dssp HTTCCEEEECCTTSTTTGGGCCCCC-----EEEEEECCCH-----HHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCH
T ss_pred hcChheeeccCCCcHHHHHhcCCCc-----eeEEecCCcH-----HHHHHHHHHHHHHHHHHHHHHHhccccccCCCcch
Confidence 87653221 1111 111111100 0000000111 234566777788888877655543332211 0111
Q ss_pred ccccHHHHHHHHHHHHHh--------------------cccCCCCCcchHHHHHHHHhhcCcccccchhhhhhhccCCCC
Q 000069 173 CEASAYQKLLMKRVEENL--------------------GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 232 (2442)
Q Consensus 173 ceMSaeQRkLYKrLeenL--------------------~SlgsskgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~ 232 (2442)
..+......++..+.... ..........+...+..|+..+.|..... ...+....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~ 323 (494)
T 1wp9_A 249 KEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKA-----SKEIFSDK 323 (494)
T ss_dssp HHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHH-----HHHHHTSH
T ss_pred hHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchh-----hhhhhhhH
Confidence 111112222222111000 00000000112222222322222211100 00000000
Q ss_pred CC----------ChhhhhccHHHHHHHHhhhhh--cCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeC--------CC
Q 000069 233 YL----------PPIVRLCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDG--------HT 292 (2442)
Q Consensus 233 ~l----------~dLIRsSGKLEaLdrLL~KLr--atGhKVLIFSQFtdTLDILED~LrkrGIkylRLDG--------ST 292 (2442)
.. ......+.|+..|.++|..+. ..++|+|||+++..+++.|.++|...|+.+.+++| ++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~ 403 (494)
T 1wp9_A 324 RMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGL 403 (494)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC------
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccC
Confidence 00 001145679999999998876 57899999999999999999999999999999999 89
Q ss_pred CHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCH
Q 000069 293 SGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 372 (2442)
Q Consensus 293 S~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSV 372 (2442)
+..+|.+++++|+.+... +|++|+++++||||+.|++||+||++|||..+.||+||++|.|| +.+|+|++.+++
T Consensus 404 ~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ 477 (494)
T 1wp9_A 404 SQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTR 477 (494)
T ss_dssp -CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSH
T ss_pred CHHHHHHHHHHHhcCCce---EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCH
Confidence 999999999999876533 68999999999999999999999999999999999999999998 899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000069 373 EEQVRASAEHKLGVAN 388 (2442)
Q Consensus 373 EErILERaqrKLdLin 388 (2442)
|++++.++.+|.++++
T Consensus 478 ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 478 DEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp HHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987654
No 7
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.97 E-value=3.1e-30 Score=300.10 Aligned_cols=208 Identities=19% Similarity=0.203 Sum_probs=158.3
Q ss_pred CCccEEEEEeccccHHHHHHHHHHHHH-h---c-ccCCC--C----CcchHHHHHHHHhhcCcccccchhhhhhhccCCC
Q 000069 163 LPEKIERLVRCEASAYQKLLMKRVEEN-L---G-SIGNS--K----GRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 231 (2442)
Q Consensus 163 LP~KvE~VIkceMSaeQRkLYKrLeen-L---~-Slgss--k----grsLlNiLMQLRKICNHPyLfqleeEEVEeLipe 231 (2442)
.|.+.|++++|.|+.+|+.+|+.+... . . ..... . ...+.+.+|+||++||||+|+...... ......
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p-~~~~~~ 98 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMP-KSLITR 98 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCC-SCSCST
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCC-cccccc
Confidence 489999999999999999999998532 1 1 11111 1 135679999999999999998411110 011111
Q ss_pred CCCChhhhhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCc
Q 000069 232 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 311 (2442)
Q Consensus 232 ~~l~dLIRsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i 311 (2442)
.....+++.||||.+|.++|..+++.++|||||+||++++|+|+++|..+++.|.|+||++... +++ ..+..+
T Consensus 99 ~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k------~~~~~~ 171 (328)
T 3hgt_A 99 DVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAA------ANDFSC 171 (328)
T ss_dssp THHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------CCSE
T ss_pred chhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhh------cccCCc
Confidence 1134578899999999999999999999999999999999999999999999999999996532 222 124567
Q ss_pred eEEEeeecccccccC-----CcccCEEEEeCCCCCcccc-chhhcccccc--CCcccEEEEEEecCCCHHHHHHHH
Q 000069 312 FIFLLSIRAGGVGVN-----LQAADTVIIFDTDWNPQVD-LQAQARAHRI--GQKRDVLVLRFETVQTVEEQVRAS 379 (2442)
Q Consensus 312 ~VFLLSTRAGGEGLN-----LQaADTVIIYDpPWNPard-eQAIGRAHRI--GQKKEVrVYRLITedSVEErILER 379 (2442)
++||+ +++||.|+| |..||+||+||++|||+.+ +||+.|+||+ ||++.|.||||++.+|+|+.++..
T Consensus 172 ~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 172 TVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp EEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred eEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 88887 678888886 7999999999999999998 9999999999 689999999999999999998875
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.95 E-value=8.1e-28 Score=284.34 Aligned_cols=145 Identities=16% Similarity=0.224 Sum_probs=85.7
Q ss_pred hccHHHHHHHHhhhhh--cCCCeEEEEEchHHHHHHHHHHHhhc------------CceEEEEeCCCCHHHHHHHHHHHh
Q 000069 240 LCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFK------------QYRYLRLDGHTSGGDRGALIDKFN 305 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLr--atGhKVLIFSQFtdTLDILED~Lrkr------------GIkylRLDGSTS~dEReeIIDrFN 305 (2442)
.++|+..|.++|.... ..++|+|||++++.++++|.++|... |..+..++|+++..+|.+++++|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 3679999999998765 66899999999999999999999765 556666777899999999999998
Q ss_pred c-CCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHH
Q 000069 306 Q-QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 384 (2442)
Q Consensus 306 a-pDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKL 384 (2442)
. +... ||++|+++++||||+.+++||+||++||+..++||+|| +| .+.+.+|.|++.++++++ +.....|.
T Consensus 450 ~~g~~~---vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR---~~~g~~~~l~~~~~~~~~-~~~~~~k~ 521 (556)
T 4a2p_A 450 TSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKE 521 (556)
T ss_dssp ----CC---EEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHH
T ss_pred ccCceE---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCcchHHH-HHhhHHHH
Confidence 7 5433 68999999999999999999999999999999999999 44 577889999999999988 55667777
Q ss_pred HHHHhhhc
Q 000069 385 GVANQSIT 392 (2442)
Q Consensus 385 dLinKVIg 392 (2442)
.++..++.
T Consensus 522 ~~~~~~i~ 529 (556)
T 4a2p_A 522 EMMNKAVE 529 (556)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67666654
No 9
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.95 E-value=4.8e-28 Score=285.16 Aligned_cols=292 Identities=14% Similarity=0.145 Sum_probs=196.0
Q ss_pred CCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCHHHHHHHHhhhcC
Q 000069 22 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLP 101 (2442)
Q Consensus 22 KFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNLeELwSLLNFLdP 101 (2442)
..+|+|+||+.+....+ .+ ..+|++|||||+|++.+...+ ..+..+...++|+|||||.+++..+
T Consensus 171 ~~~Ivv~T~~~l~~~~~--~~-~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~---------- 235 (472)
T 2fwr_A 171 LKPLTVSTYDSAYVNAE--KL-GNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRH---------- 235 (472)
T ss_dssp CCSEEEEEHHHHHHTHH--HH-TTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG----------
T ss_pred cCCEEEEEcHHHHHHHH--Hh-cCCCCEEEEECCcCCCChHHH--HHHHhcCCCeEEEEecCccCCCCHH----------
Confidence 46899999999976322 22 245999999999999986533 4556678889999999998643110
Q ss_pred CCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhh-cCCccEEEEEeccccHHHH
Q 000069 102 NIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVEN-ELPEKIERLVRCEASAYQK 180 (2442)
Q Consensus 102 eIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVek-dLP~KvE~VIkceMSaeQR 180 (2442)
..|..++.+++.++...++.. .+++.....+.+.++..++
T Consensus 236 ---------------------------------------~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 276 (472)
T 2fwr_A 236 ---------------------------------------EILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDER 276 (472)
T ss_dssp ---------------------------------------GSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHH
T ss_pred ---------------------------------------HHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHH
Confidence 013344555555555555533 3666777788899999999
Q ss_pred HHHHHHHHHhcccCCCCC------cchHHHHHHHHhhcCcccccchhhhhhhccCCCCCCChhhhhccHHHHHHHHhhhh
Q 000069 181 LLMKRVEENLGSIGNSKG------RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKL 254 (2442)
Q Consensus 181 kLYKrLeenL~Slgsskg------rsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~~l~dLIRsSGKLEaLdrLL~KL 254 (2442)
..|..+...+........ ..+...+. .....+......... ..........+.|+..|.++|..
T Consensus 277 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~~~~~~k~~~l~~~l~~- 346 (472)
T 2fwr_A 277 VEYEKREKVYKQFLRARGITLRRAEDFNKIVM---ASGYDERAYEALRAW------EEARRIAFNSKNKIRKLREILER- 346 (472)
T ss_dssp HHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTT---TTCCSSSSSTTTHHH------HHHHHHHHSCSHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhcCccccchhhHHHHHH---HhccCHHHHHHHHHH------HHHHHHhhcChHHHHHHHHHHHh-
Confidence 888766544332211110 00000000 000000000000000 00000112355799999999987
Q ss_pred hcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEE
Q 000069 255 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 334 (2442)
Q Consensus 255 ratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVI 334 (2442)
..++|+|||+++...++.|.++|. +..++|.++..+|.+++++|+.+... +|++|+++++||||+.+++||
T Consensus 347 -~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~---vLv~T~~~~~Gldlp~~~~Vi 417 (472)
T 2fwr_A 347 -HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFR---AIVSSQVLDEGIDVPDANVGV 417 (472)
T ss_dssp -TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCS---BCBCSSCCCSSSCSCCBSEEE
T ss_pred -CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCC---EEEEcCchhcCcccccCcEEE
Confidence 458999999999999999999984 45689999999999999999876544 689999999999999999999
Q ss_pred EeCCCCCccccchhhccccccCCc-ccEEEEEEecCCCHHHHHHHHHHHHHHH
Q 000069 335 IFDTDWNPQVDLQAQARAHRIGQK-RDVLVLRFETVQTVEEQVRASAEHKLGV 386 (2442)
Q Consensus 335 IYDpPWNPardeQAIGRAHRIGQK-KEVrVYRLITedSVEErILERaqrKLdL 386 (2442)
+||++||+..+.||+||++|+||. +.|+||+|++.+|+|+++..+.+.|.++
T Consensus 418 ~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 418 IMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp EECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC--------------
T ss_pred EECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhcc
Confidence 999999999999999999999998 7899999999999999999988877654
No 10
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.95 E-value=3.8e-27 Score=277.32 Aligned_cols=144 Identities=17% Similarity=0.248 Sum_probs=100.2
Q ss_pred hccHHHHHHHHhhhhhc--CCCeEEEEEchHHHHHHHHHHHhhcC------------ceEEEEeCCCCHHHHHHHHHHHh
Q 000069 240 LCGKLEMLDRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYLTFKQ------------YRYLRLDGHTSGGDRGALIDKFN 305 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLra--tGhKVLIFSQFtdTLDILED~LrkrG------------IkylRLDGSTS~dEReeIIDrFN 305 (2442)
.+.|+..|.++|..+.. .++|+||||+++.++++|.++|...+ ..+..++|+++..+|.+++++|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 46799999999988753 45999999999999999999998763 45566667999999999999998
Q ss_pred c-CCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHH
Q 000069 306 Q-QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 384 (2442)
Q Consensus 306 a-pDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKL 384 (2442)
. +... +|++|+++++||||+.+++||+||++|||..++||+|| |+.+.+.+|.|++.++.++. ......|.
T Consensus 449 ~~g~~~---vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e 520 (555)
T 3tbk_A 449 ASGDNN---ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKE 520 (555)
T ss_dssp ---CCS---EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHH
T ss_pred cCCCee---EEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHH
Confidence 7 4433 68899999999999999999999999999999999999 55688999999999988876 44445555
Q ss_pred HHHHhhh
Q 000069 385 GVANQSI 391 (2442)
Q Consensus 385 dLinKVI 391 (2442)
.++++.+
T Consensus 521 ~~~~~~~ 527 (555)
T 3tbk_A 521 KIMNESI 527 (555)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.94 E-value=6.3e-27 Score=295.37 Aligned_cols=145 Identities=16% Similarity=0.219 Sum_probs=90.7
Q ss_pred hccHHHHHHHHhhhhh--cCCCeEEEEEchHHHHHHHHHHHhh------------cCceEEEEeCCCCHHHHHHHHHHHh
Q 000069 240 LCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTF------------KQYRYLRLDGHTSGGDRGALIDKFN 305 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLr--atGhKVLIFSQFtdTLDILED~Lrk------------rGIkylRLDGSTS~dEReeIIDrFN 305 (2442)
.++|+..|.++|.... ..++|+||||+++.++++|.++|.. .|..+..++|+++..+|..++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 4779999999998754 5679999999999999999999976 3566777888999999999999998
Q ss_pred c-CCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHH
Q 000069 306 Q-QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 384 (2442)
Q Consensus 306 a-pDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKL 384 (2442)
. +... |||+|+++++||||+.|++||+||++|||..++||+|| +| .+.+.+|+|++.++++++ +.....|.
T Consensus 691 ~~g~~~---vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR---~~~g~~i~l~~~~~~ee~-~~~~~~ke 762 (797)
T 4a2q_A 691 TSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKE 762 (797)
T ss_dssp ---CCS---EEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHH
T ss_pred ccCCce---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCCcHHHH-HHHHHHHH
Confidence 7 5433 78999999999999999999999999999999999999 55 478889999999999988 66677777
Q ss_pred HHHHhhhc
Q 000069 385 GVANQSIT 392 (2442)
Q Consensus 385 dLinKVIg 392 (2442)
.++.+++.
T Consensus 763 ~~~~~~i~ 770 (797)
T 4a2q_A 763 EMMNKAVE 770 (797)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777664
No 12
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.93 E-value=3.2e-26 Score=294.88 Aligned_cols=146 Identities=16% Similarity=0.234 Sum_probs=92.9
Q ss_pred hccHHHHHHHHhhhhh--cCCCeEEEEEchHHHHHHHHHHHhhc------------CceEEEEeCCCCHHHHHHHHHHHh
Q 000069 240 LCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFK------------QYRYLRLDGHTSGGDRGALIDKFN 305 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLr--atGhKVLIFSQFtdTLDILED~Lrkr------------GIkylRLDGSTS~dEReeIIDrFN 305 (2442)
.++|+..|.++|.... ..++|+|||++++.++++|.++|... |..+..++|+++..+|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 4779999999998764 55799999999999999999999876 556667788899999999999998
Q ss_pred c-CCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHHH
Q 000069 306 Q-QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 384 (2442)
Q Consensus 306 a-pDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrKL 384 (2442)
. +... |||+|+++++||||+.|++||+||++||+..++||+|| |+.+.+.+|+|++.++++++.+ ....|.
T Consensus 691 ~~g~~~---VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke 762 (936)
T 4a2w_A 691 TSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKE 762 (936)
T ss_dssp ---CCS---EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHH
T ss_pred ccCCee---EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH-HHHHHH
Confidence 7 5433 78999999999999999999999999999999999999 4457788999999999999865 666777
Q ss_pred HHHHhhhcc
Q 000069 385 GVANQSITA 393 (2442)
Q Consensus 385 dLinKVIgA 393 (2442)
.++.+++..
T Consensus 763 ~~~~~~i~~ 771 (936)
T 4a2w_A 763 EMMNKAVEK 771 (936)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777653
No 13
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.90 E-value=5.9e-24 Score=261.39 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=82.2
Q ss_pred hccHHHHHHHHhhhhh--cCCCeEEEEEchHHHHHHHHHHHhhcC----ceEEEEeC--------CCCHHHHHHHHHHHh
Q 000069 240 LCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFKQ----YRYLRLDG--------HTSGGDRGALIDKFN 305 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLr--atGhKVLIFSQFtdTLDILED~LrkrG----IkylRLDG--------STS~dEReeIIDrFN 305 (2442)
...|+..|.++|.... ..++++|||++++..++.|.++|...+ +++..++| +++..+|.+++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 4569999999998764 357899999999999999999999888 89999955 999999999999998
Q ss_pred c-CCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHH
Q 000069 306 Q-QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 375 (2442)
Q Consensus 306 a-pDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEEr 375 (2442)
. +... +|++|+++++|||++.+++||+||++||+..++||+|| +|. +...+|.|++.+++++.
T Consensus 458 ~~g~~~---vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 458 ASGDHN---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp ---CCS---CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred hcCCcc---EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 6 5444 58999999999999999999999999999999999999 885 56788888888776553
No 14
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=258.10 Aligned_cols=144 Identities=15% Similarity=0.172 Sum_probs=109.0
Q ss_pred ccHHHHHHHHhhhhhcC---CCeEEEEEchHHHHHHHHHHHhhc------CceEEEEeCC--------CCHHHHHHHHHH
Q 000069 241 CGKLEMLDRLLPKLKAT---DHRVLFFSTMTRLLDVMEDYLTFK------QYRYLRLDGH--------TSGGDRGALIDK 303 (2442)
Q Consensus 241 SGKLEaLdrLL~KLrat---GhKVLIFSQFtdTLDILED~Lrkr------GIkylRLDGS--------TS~dEReeIIDr 303 (2442)
+.|+..|.++|...... +.|+|||++++.+++.|.++|... |+++..++|+ ++..+|.+++++
T Consensus 380 ~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~ 459 (699)
T 4gl2_A 380 NEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISK 459 (699)
T ss_dssp --CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHH
Confidence 45777777777664432 789999999999999999999887 8999999999 999999999999
Q ss_pred HhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHH
Q 000069 304 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 383 (2442)
Q Consensus 304 FNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrK 383 (2442)
|+.+... +|++|+++++|||++.+++||+||++||+..++||+||++|-| ..++.+...++.+...+.....+
T Consensus 460 F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~~~ 532 (699)
T 4gl2_A 460 FRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVNDFR 532 (699)
T ss_dssp HCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHHHH
T ss_pred HhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHHHH
Confidence 9876544 6899999999999999999999999999999999999986655 33444455555444443334444
Q ss_pred HHHHHhhh
Q 000069 384 LGVANQSI 391 (2442)
Q Consensus 384 LdLinKVI 391 (2442)
..++...+
T Consensus 533 ~~~~~~~~ 540 (699)
T 4gl2_A 533 EKMMYKAI 540 (699)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44455444
No 15
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.87 E-value=6.4e-22 Score=235.47 Aligned_cols=257 Identities=12% Similarity=0.145 Sum_probs=177.1
Q ss_pred CCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhc-ccccEEEEEeccCCCCHHHHHHHHhhh
Q 000069 21 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY-QSSHRLLLTGTPLQNNLEELWALLNFL 99 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqL-kSrrRLLLTGTPLQNNLeELwSLLNFL 99 (2442)
...+|+|+||+.+.+.. ...-.+|++|||||+|++.+. .....++.+ ...++|+||||| .+...+++.+..++
T Consensus 203 ~~~~I~i~T~~~l~~~~---~~~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~ 276 (510)
T 2oca_A 203 NDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMF 276 (510)
T ss_dssp TTCSEEEEEHHHHTTSC---GGGGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHH
T ss_pred cCCcEEEEeHHHHhhch---hhhhhcCCEEEEECCcCCCcc--cHHHHHHhcccCcEEEEEEeCC-CCCcccHHHhHHhh
Confidence 67899999999997732 122346899999999999873 244455666 567899999999 55555667776666
Q ss_pred cCCCCCChHHHHHHhcCccccCCCCCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhHHhhcCCccEEEEEeccccHHH
Q 000069 100 LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQ 179 (2442)
Q Consensus 100 dPeIFnS~e~FeEwFnKPfe~~g~~s~dEaeLSEEEkllIIkRLhKLLRPFMLRRTKKDVekdLP~KvE~VIkceMSaeQ 179 (2442)
.+..+.- . .. . +.. ...+++.....+.+.+....
T Consensus 277 ~~~~~~~--------------~-~~---~--~~~--------------------------~~~l~~~~~~~~~~~~~~~~ 310 (510)
T 2oca_A 277 GEIFKPV--------------T-TS---K--LME--------------------------DGQVTELKINSIFLRYPDEF 310 (510)
T ss_dssp CSEECCC--------------C-CC----------------------------------------CCEEEEEEEECCHHH
T ss_pred CCeEEee--------------C-HH---H--Hhh--------------------------CCcCCCceEEEEeecCChHH
Confidence 5533210 0 00 0 000 01244455555555555433
Q ss_pred HHHHHHHHHHhcccCCCCCcchHHHHHHHHhhcCcccccchhhhhhhccCCCCCCChhhhhccHHHHHHHHhhhhhcC-C
Q 000069 180 KLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT-D 258 (2442)
Q Consensus 180 RkLYKrLeenL~SlgsskgrsLlNiLMQLRKICNHPyLfqleeEEVEeLipe~~l~dLIRsSGKLEaLdrLL~KLrat-G 258 (2442)
..... ...+.. .+..+ .....|...+.+++..+... +
T Consensus 311 ~~~~~-------------~~~~~~---~~~~~--------------------------~~~~~~~~~l~~~l~~~~~~~~ 348 (510)
T 2oca_A 311 TTKLK-------------GKTYQE---EIKII--------------------------TGLSKRNKWIAKLAIKLAQKDE 348 (510)
T ss_dssp HHHHT-------------TCCHHH---HHHHH--------------------------HTCHHHHHHHHHHHHHHHTTTC
T ss_pred hcccc-------------ccchHH---HHHHH--------------------------hccHHHHHHHHHHHHHHHhcCC
Confidence 21000 000110 01111 11123555666666665444 4
Q ss_pred CeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeee-cccccccCCcccCEEEEeC
Q 000069 259 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI-RAGGVGVNLQAADTVIIFD 337 (2442)
Q Consensus 259 hKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLST-RAGGEGLNLQaADTVIIYD 337 (2442)
+++|||+. +..++.|.++|...+.++..++|.++..+|.+++++|+.+... +|++| +++++|||++.+++||+||
T Consensus 349 ~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~---vLv~T~~~~~~GiDip~v~~vi~~~ 424 (510)
T 2oca_A 349 NAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGI---IIVASYGVFSTGISVKNLHHVVLAH 424 (510)
T ss_dssp EEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSC---EEEEEHHHHHHSCCCCSEEEEEESS
T ss_pred CeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCC---EEEEEcChhhcccccccCcEEEEeC
Confidence 56777777 8888889999999888999999999999999999999876544 67777 9999999999999999999
Q ss_pred CCCCccccchhhccccccCCcc-cEEEEEEecCCCHHHH
Q 000069 338 TDWNPQVDLQAQARAHRIGQKR-DVLVLRFETVQTVEEQ 375 (2442)
Q Consensus 338 pPWNPardeQAIGRAHRIGQKK-EVrVYRLITedSVEEr 375 (2442)
++|++..+.|++||++|.|+.+ .|.||.|+...++.++
T Consensus 425 ~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~ 463 (510)
T 2oca_A 425 GVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPK 463 (510)
T ss_dssp CCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCS
T ss_pred CCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhh
Confidence 9999999999999999999987 6999999987765443
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.86 E-value=7.6e-22 Score=240.25 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=99.5
Q ss_pred cCCCeEEEEEchHHHHHHHHHHHhhcCce--------EEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCC
Q 000069 256 ATDHRVLFFSTMTRLLDVMEDYLTFKQYR--------YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 327 (2442)
Q Consensus 256 atGhKVLIFSQFtdTLDILED~LrkrGIk--------ylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNL 327 (2442)
..+.|+||||++...++.|.++|...+.. +.+++|.++ ++|.+++++|+.++..+.+||++|+++++|||+
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 45689999999999999999999776543 678899876 379999999998877788999999999999999
Q ss_pred cccCEEEEeCCCCCccccchhhccccccCC---cccEEEEEEe
Q 000069 328 QAADTVIIFDTDWNPQVDLQAQARAHRIGQ---KRDVLVLRFE 367 (2442)
Q Consensus 328 QaADTVIIYDpPWNPardeQAIGRAHRIGQ---KKEVrVYRLI 367 (2442)
+.+++||+|+++|++..++|++||++|+|+ +..+.||.|+
T Consensus 516 p~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 516 PTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp TTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred hheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 999999999999999999999999999995 5568899887
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.86 E-value=2.7e-21 Score=219.19 Aligned_cols=134 Identities=16% Similarity=0.218 Sum_probs=113.0
Q ss_pred cHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccc
Q 000069 242 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 321 (2442)
Q Consensus 242 GKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAG 321 (2442)
.|...|.+++... .++|+|||++....++.+.++|...|+.+..++|+++..+|..++++|+.+... +|++|+++
T Consensus 236 ~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~ 310 (391)
T 1xti_A 236 EKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATNLF 310 (391)
T ss_dssp GHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCS---EEEESCCC
T ss_pred hHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCc---EEEECChh
Confidence 4677788888754 578999999999999999999999999999999999999999999999876544 78999999
Q ss_pred ccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHH
Q 000069 322 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 383 (2442)
Q Consensus 322 GEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrK 383 (2442)
++|+|++.+++||+||++|++..+.||+||++|.|+...+.+| +... -+..++.....+
T Consensus 311 ~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~--~~~~-~~~~~~~~~~~~ 369 (391)
T 1xti_A 311 GRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF--VSDE-NDAKILNDVQDR 369 (391)
T ss_dssp SSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEE--ECSH-HHHHHHHHHHHH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEE--Eccc-chHHHHHHHHHH
Confidence 9999999999999999999999999999999999986665443 3332 244455544443
No 18
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.85 E-value=8.5e-22 Score=224.95 Aligned_cols=121 Identities=21% Similarity=0.328 Sum_probs=95.3
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|+..|..++... .+.++|||+.....++.+.++|...++.+..++|+++..+|..++++|+.+... +|++|++++
T Consensus 267 ~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~ 341 (414)
T 3eiq_A 267 KLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR---VLITTDLLA 341 (414)
T ss_dssp HHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC------CEEECSSCC
T ss_pred HHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCc---EEEECCccc
Confidence 778888888754 467999999999999999999999999999999999999999999999765433 799999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCC
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
+|||++.+++||+||++||+..+.||+||++|.|+... +|.|++..
T Consensus 342 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 387 (414)
T 3eiq_A 342 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV--AINMVTEE 387 (414)
T ss_dssp --CCGGGCSCEEESSCCSSTHHHHHHSCCC-------C--EEEEECST
T ss_pred cCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCce--EEEEEcHH
Confidence 99999999999999999999999999999999997654 44555555
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.85 E-value=9.5e-22 Score=219.56 Aligned_cols=120 Identities=21% Similarity=0.306 Sum_probs=106.0
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|+..|.+++. ..+.++|||+.....++.+.++|+..++.+..++|+++..+|..++++|+.+... +|++|++++
T Consensus 226 ~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~~ 299 (367)
T 1hv8_A 226 RFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR---ILIATDVMS 299 (367)
T ss_dssp HHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS---EEEECTTHH
T ss_pred HHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCe---EEEECChhh
Confidence 6666666664 5678999999999999999999999999999999999999999999999876544 788999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCC
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
+|+|++.+++||+||++|++..+.||+||++|.|+...+.+| +...
T Consensus 300 ~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~--~~~~ 345 (367)
T 1hv8_A 300 RGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISI--INRR 345 (367)
T ss_dssp HHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEE--ECTT
T ss_pred cCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEE--EcHH
Confidence 999999999999999999999999999999999987765444 4444
No 20
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.84 E-value=1.1e-20 Score=216.00 Aligned_cols=122 Identities=20% Similarity=0.279 Sum_probs=107.1
Q ss_pred cHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccc
Q 000069 242 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 321 (2442)
Q Consensus 242 GKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAG 321 (2442)
.|+..|..++... .++++|||++....++.+.++|...|+.+..++|+++..+|..++++|+.+... +|++|+++
T Consensus 244 ~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vLv~T~~~ 318 (400)
T 1s2m_A 244 QKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR---TLVCSDLL 318 (400)
T ss_dssp GHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEESSCS
T ss_pred hHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCc---EEEEcCcc
Confidence 3667777777653 467999999999999999999999999999999999999999999999876544 78999999
Q ss_pred ccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCC
Q 000069 322 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 322 GEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
++|||++.+++||+||++|++..+.||+||++|.|+... +|.|+..+
T Consensus 319 ~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~l~~~~ 365 (400)
T 1s2m_A 319 TRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL--AINLINWN 365 (400)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEE--EEEEECGG
T ss_pred ccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCce--EEEEeccc
Confidence 999999999999999999999999999999999997654 44555555
No 21
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.84 E-value=5.4e-21 Score=219.56 Aligned_cols=121 Identities=18% Similarity=0.316 Sum_probs=107.3
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|+..|.+++.... ..++|||++....++.|.++|...|+.+..++|+++..+|..++++|+.+... +|++|++++
T Consensus 263 k~~~l~~~~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~ 337 (410)
T 2j0s_A 263 KFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR---VLISTDVWA 337 (410)
T ss_dssp HHHHHHHHHHHHT--SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC---EEEECGGGS
T ss_pred HHHHHHHHHHhcC--CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCC---EEEECChhh
Confidence 6777888877543 56999999999999999999999999999999999999999999999876544 789999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCC
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
+|||++.+++||+||++|++..+.||+||++|.|++.. ++.|+...
T Consensus 338 ~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 383 (410)
T 2j0s_A 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV--AINFVKND 383 (410)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEE--EEEEEEGG
T ss_pred CcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceE--EEEEecHH
Confidence 99999999999999999999999999999999998654 44555554
No 22
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.84 E-value=1.1e-20 Score=213.13 Aligned_cols=118 Identities=20% Similarity=0.323 Sum_probs=105.0
Q ss_pred cHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccc
Q 000069 242 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 321 (2442)
Q Consensus 242 GKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAG 321 (2442)
.|+..|..++... .+.++|||+.....++.+.++|+..++.+..++|+++..+|.+++++|+.+... +|++|+++
T Consensus 229 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~ 303 (395)
T 3pey_A 229 DKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSK---VLITTNVL 303 (395)
T ss_dssp HHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCC---EEEECGGG
T ss_pred HHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCC---EEEECChh
Confidence 3667777777644 468999999999999999999999999999999999999999999999876544 79999999
Q ss_pred ccccCCcccCEEEEeCCCC------CccccchhhccccccCCcccEEEE
Q 000069 322 GVGVNLQAADTVIIFDTDW------NPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 322 GEGLNLQaADTVIIYDpPW------NPardeQAIGRAHRIGQKKEVrVY 364 (2442)
++|||++.+++||+||++| ++..+.||+||++|.|+...+.+|
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 352 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISF 352 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEE
Confidence 9999999999999999999 999999999999999986655444
No 23
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.83 E-value=6e-20 Score=210.45 Aligned_cols=122 Identities=24% Similarity=0.344 Sum_probs=105.0
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|...|.+++... ..++++|||+.....++.+.++|...|+.+..++|+++..+|..++++|+.+... +|++|++++
T Consensus 262 ~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~~~~ 337 (417)
T 2i4i_A 262 KRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVATAVAA 337 (417)
T ss_dssp HHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC---EEEECHHHH
T ss_pred HHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhh
Confidence 666677777653 3578999999999999999999999999999999999999999999999876544 799999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCC
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
+|||++.+++||+||++|++..+.||+||++|.|+... +|.|+...
T Consensus 338 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 383 (417)
T 2i4i_A 338 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 383 (417)
T ss_dssp TTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEE--EEEEECGG
T ss_pred cCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCce--EEEEEccc
Confidence 99999999999999999999999999999999997644 44445443
No 24
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.82 E-value=3e-20 Score=205.69 Aligned_cols=116 Identities=18% Similarity=0.327 Sum_probs=99.7
Q ss_pred cCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEE
Q 000069 256 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 335 (2442)
Q Consensus 256 atGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVII 335 (2442)
..++++|||++....++.+.++|. .+..++|+++..+|.+++++|+.+... +|++|+++++|||++.+++||+
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYD---MLITTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECHHHHTTCCCCCBSEEEE
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCc---EEEEcCccccCCCccCCCEEEE
Confidence 357899999999999999999887 578899999999999999999876544 7899999999999999999999
Q ss_pred eCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHH
Q 000069 336 FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 379 (2442)
Q Consensus 336 YDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILER 379 (2442)
||++|++..+.||+||++|.|+...+.+|.. .+..+.+++.+.
T Consensus 291 ~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~ 333 (337)
T 2z0m_A 291 FDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKV 333 (337)
T ss_dssp SSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC--
T ss_pred ecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHH
Confidence 9999999999999999999999888877766 444444444433
No 25
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.82 E-value=1.6e-19 Score=205.80 Aligned_cols=133 Identities=17% Similarity=0.253 Sum_probs=109.9
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|+..|.+++... .+.++|||+.....++.|..+|...++.+..++|+++..+|..++++|+.+... +|++|++++
T Consensus 253 ~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~ 327 (412)
T 3fht_A 253 KFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK---VLVTTNVCA 327 (412)
T ss_dssp HHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS---EEEECGGGT
T ss_pred HHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc---EEEEcCccc
Confidence 667777777653 467999999999999999999999999999999999999999999999876544 799999999
Q ss_pred cccCCcccCEEEEeCCCCCc------cccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHHH
Q 000069 323 VGVNLQAADTVIIFDTDWNP------QVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 383 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNP------ardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqrK 383 (2442)
+|||++.+++||+||++|++ ..+.||+||++|.|+...+. .|+.. .-+..++.....+
T Consensus 328 ~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~--~~~~~-~~~~~~~~~i~~~ 391 (412)
T 3fht_A 328 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV--NMVDS-KHSMNILNRIQEH 391 (412)
T ss_dssp SSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEE--EEECS-HHHHHHHHHHHHH
T ss_pred cCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEE--EEEcC-hhhHHHHHHHHHH
Confidence 99999999999999999987 58999999999999765543 34432 2234455544444
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.81 E-value=5.2e-21 Score=216.62 Aligned_cols=117 Identities=19% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|+..|.+++... .++++|||+.....++.+.++|+..++.+..++|+++..+|..++++|+.+.. .+|++|++++
T Consensus 246 ~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vlv~T~~~~ 320 (394)
T 1fuu_A 246 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS---RILISTDLLA 320 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCC---cEEEECChhh
Confidence 445555665543 35799999999999999999999999999999999999999999999976543 3789999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEE
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVY 364 (2442)
+|+|++.+++||+||++|++..+.||+||++|.|+...+.+|
T Consensus 321 ~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 362 (394)
T 1fuu_A 321 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF 362 (394)
T ss_dssp ------------------------------------------
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEE
Confidence 999999999999999999999999999999999987655443
No 27
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.81 E-value=3.3e-19 Score=210.67 Aligned_cols=116 Identities=16% Similarity=0.279 Sum_probs=103.3
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|...|.++|... +.++|||++....++.|.++|...|+.+..++|+++..+|..++++|+.+... +|++|++++
T Consensus 288 k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~v~~ 361 (434)
T 2db3_A 288 KRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK---VLIATSVAS 361 (434)
T ss_dssp HHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCS---EEEECGGGT
T ss_pred HHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCc---EEEEchhhh
Confidence 666666766543 34599999999999999999999999999999999999999999999876544 799999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEE
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVY 364 (2442)
+|||+..+++||+||++|++..|.||+||++|.|+...+.+|
T Consensus 362 rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~ 403 (434)
T 2db3_A 362 RGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSF 403 (434)
T ss_dssp SSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred CCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEE
Confidence 999999999999999999999999999999999986655444
No 28
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.79 E-value=5.1e-19 Score=215.33 Aligned_cols=117 Identities=19% Similarity=0.239 Sum_probs=103.9
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|+..|.++|... .++++|||+.....++.+.++|...|+.+..++|+++..+|..++++|..++.. +|++|.+++
T Consensus 223 ~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~---vlVaT~a~~ 297 (523)
T 1oyw_A 223 PLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ---IVVATVAFG 297 (523)
T ss_dssp HHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECTTSC
T ss_pred HHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEEechhh
Confidence 445555666543 578999999999999999999999999999999999999999999999876544 789999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEE
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVY 364 (2442)
+|||++.+++||+||+||++..+.|++||++|.|+...+.+|
T Consensus 298 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp TTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 999999999999999999999999999999999987766554
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.73 E-value=2.5e-17 Score=191.01 Aligned_cols=127 Identities=20% Similarity=0.232 Sum_probs=101.9
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEE-EEeCCCCHHHHHHHHHHHhcCCCCceEEEee----
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYL-RLDGHTSGGDRGALIDKFNQQDSPFFIFLLS---- 317 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkyl-RLDGSTS~dEReeIIDrFNapDS~i~VFLLS---- 317 (2442)
|...|..+|.. .+.++|||+.....++.|..+|...|+.+. .++|. +|. +++|+.+... +|++
T Consensus 240 ~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~---vLvat~s~ 307 (414)
T 3oiy_A 240 SKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKIN---ILIGVQAY 307 (414)
T ss_dssp CHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCS---EEEEECCT
T ss_pred HHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCe---EEEEecCc
Confidence 45556666655 358999999999999999999999999998 88884 444 9999876544 5666
Q ss_pred ecccccccCCcc-cCEEEEeCCC--CCccccchhhccccccCCc--ccEEEEEEecCCCHHHHHHHHHHHHHH
Q 000069 318 IRAGGVGVNLQA-ADTVIIFDTD--WNPQVDLQAQARAHRIGQK--RDVLVLRFETVQTVEEQVRASAEHKLG 385 (2442)
Q Consensus 318 TRAGGEGLNLQa-ADTVIIYDpP--WNPardeQAIGRAHRIGQK--KEVrVYRLITedSVEErILERaqrKLd 385 (2442)
|+++++|||++. +++||+||++ |++..|.||+||++|.|+. +.-.++.|+ + |..++....+.+.
T Consensus 308 T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~--~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 308 YGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--E--DEEIFESLKTRLL 376 (414)
T ss_dssp TCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--C--CHHHHHHHHHHHH
T ss_pred CchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--c--cHHHHHHHHHHhc
Confidence 999999999999 9999999999 9999999999999999985 566666666 2 3445555555544
No 30
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.72 E-value=2.1e-17 Score=204.64 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=103.6
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
++..|.++|... ..+.++|||+.....++.|..+|...|+.+..++|+++..+|..++++|..+... +|++|.+++
T Consensus 253 ~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~---VlVAT~a~~ 328 (591)
T 2v1x_A 253 FIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQ---VVVATVAFG 328 (591)
T ss_dssp HHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEECTTSC
T ss_pred HHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEEechhh
Confidence 344455555432 2578999999999999999999999999999999999999999999999876544 789999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEE
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVY 364 (2442)
+|||++.++.||+||+++++..|.|++||++|.|+...+.+|
T Consensus 329 ~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 329 MGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp TTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred cCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 999999999999999999999999999999999987766655
No 31
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.71 E-value=2.9e-18 Score=203.07 Aligned_cols=117 Identities=19% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|+..|.+++... .+.++||||.....++.|..+|...++.+..++|+++..+|..++++|+.+... +|++|++++
T Consensus 320 ~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~---iLv~T~~~~ 394 (479)
T 3fmp_B 320 KFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK---VLVTTNVCA 394 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCc---EEEEccccc
Confidence 455555555433 356899999999999999999999999999999999999999999999876543 799999999
Q ss_pred cccCCcccCEEEEeCCCCCc------cccchhhccccccCCcccEEEE
Q 000069 323 VGVNLQAADTVIIFDTDWNP------QVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNP------ardeQAIGRAHRIGQKKEVrVY 364 (2442)
+|||++.+++||+||++|++ ..|.||+||++|.|+...+.++
T Consensus 395 ~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~ 442 (479)
T 3fmp_B 395 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM 442 (479)
T ss_dssp ------------------------------------------------
T ss_pred cCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEE
Confidence 99999999999999999876 6899999999999976554443
No 32
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.71 E-value=5.8e-17 Score=168.45 Aligned_cols=134 Identities=19% Similarity=0.306 Sum_probs=115.0
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+..|.++|... .+.|+|||++....++.|..+|...|+.+..++|+++..+|..++++|+.+... +|++|+
T Consensus 19 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T~ 93 (163)
T 2hjv_A 19 EENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVATD 93 (163)
T ss_dssp GGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECG
T ss_pred hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEECC
Confidence 456999999999764 467999999999999999999999999999999999999999999999876544 688999
Q ss_pred ccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHH
Q 000069 320 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 382 (2442)
Q Consensus 320 AGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqr 382 (2442)
++++|||++.+++||+||+||++..+.||+||++|.|+...+ +.|+... |...+....+
T Consensus 94 ~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i~~ 152 (163)
T 2hjv_A 94 VAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADIEE 152 (163)
T ss_dssp GGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHHHH
T ss_pred hhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHHHH
Confidence 999999999999999999999999999999999999987655 4445544 4444444443
No 33
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.70 E-value=6.9e-17 Score=194.69 Aligned_cols=119 Identities=15% Similarity=0.300 Sum_probs=101.3
Q ss_pred cCCCeEEEEEchHHHHHHHHHHHhhc---CceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCE
Q 000069 256 ATDHRVLFFSTMTRLLDVMEDYLTFK---QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT 332 (2442)
Q Consensus 256 atGhKVLIFSQFtdTLDILED~Lrkr---GIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADT 332 (2442)
..+.++|||+.....++.+..+|... ++.+..++|+++..+|..++++|+.+... +|++|+++++|||+..+++
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~---vLvaT~~~~~GiDip~v~~ 413 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHE 413 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCC---EEEEcchhhcCCCcccCCE
Confidence 45789999999999999999999876 99999999999999999999999876543 7999999999999999999
Q ss_pred EEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHH
Q 000069 333 VIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAE 381 (2442)
Q Consensus 333 VIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaq 381 (2442)
||+||++|++..++||+||++|.|+...+.+ |+... |...+..+.
T Consensus 414 VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~--~~~~~--e~~~~~~l~ 458 (563)
T 3i5x_A 414 VLQIGVPSELANYIHRIGRTARSGKEGSSVL--FICKD--ELPFVRELE 458 (563)
T ss_dssp EEEESCCSSTTHHHHHHTTSSCTTCCEEEEE--EEEGG--GHHHHHHHH
T ss_pred EEEECCCCchhhhhhhcCccccCCCCceEEE--EEchh--HHHHHHHHH
Confidence 9999999999999999999999997654444 44443 333444443
No 34
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=174.32 Aligned_cols=126 Identities=23% Similarity=0.323 Sum_probs=97.6
Q ss_pred hhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeee
Q 000069 239 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 318 (2442)
Q Consensus 239 RsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLST 318 (2442)
..+.|+.+|.++|.... .+.|+|||++....++.|..+|...|+.+..++|+++..+|..++++|+.+... +|++|
T Consensus 28 ~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEEE
T ss_pred CcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEc
Confidence 34679999999998743 578999999999999999999999999999999999999999999999876544 78899
Q ss_pred cccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCC
Q 000069 319 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 319 RAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
+++++|||++.+++||+||+|||+..++||+||++|.|++..+ +.|++..
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 153 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA--TSFFNER 153 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEE--EEEECGG
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEE--EEEEchh
Confidence 9999999999999999999999999999999999999986554 4455443
No 35
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=7e-17 Score=197.05 Aligned_cols=120 Identities=14% Similarity=0.285 Sum_probs=102.1
Q ss_pred cCCCeEEEEEchHHHHHHHHHHHhhc---CceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCE
Q 000069 256 ATDHRVLFFSTMTRLLDVMEDYLTFK---QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT 332 (2442)
Q Consensus 256 atGhKVLIFSQFtdTLDILED~Lrkr---GIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADT 332 (2442)
..+.++|||+.....++.+.++|... ++.+..++|+++..+|..++++|+.+... +|++|+++++|||++.+++
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~---vLVaT~~~~~GiDip~v~~ 362 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHE 362 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCe---EEEEcchhhcCCCcccCCE
Confidence 45789999999999999999999876 99999999999999999999999876433 7899999999999999999
Q ss_pred EEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHH
Q 000069 333 VIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 382 (2442)
Q Consensus 333 VIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqr 382 (2442)
||+||+||++..++||+||++|.|+...+.+| +... |..++..+..
T Consensus 363 VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~--~~~~--e~~~~~~l~~ 408 (579)
T 3sqw_A 363 VLQIGVPSELANYIHRIGRTARSGKEGSSVLF--ICKD--ELPFVRELED 408 (579)
T ss_dssp EEEESCCSSTTHHHHHHTTSSCTTCCEEEEEE--EEGG--GHHHHHHHHH
T ss_pred EEEcCCCCCHHHhhhhccccccCCCCceEEEE--Eccc--HHHHHHHHHH
Confidence 99999999999999999999999976555444 4443 4444444433
No 36
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.69 E-value=8.2e-17 Score=169.51 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=108.3
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.+|.++|... .+.|+|||+++...++.|..+|...|+.+..++|+++..+|..++++|+.+... +|++|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEECC
Confidence 356999999999865 467999999999999999999999999999999999999999999999876544 688999
Q ss_pred ccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEE
Q 000069 320 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 363 (2442)
Q Consensus 320 AGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrV 363 (2442)
++++|||++.+++||+||+|||+..+.||+||++|.|+...+.+
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~ 133 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 133 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEE
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEE
Confidence 99999999999999999999999999999999999998765443
No 37
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.69 E-value=1.8e-16 Score=164.64 Aligned_cols=123 Identities=20% Similarity=0.313 Sum_probs=106.1
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
|+..|.+++... .+.|+|||++....++.|..+|...++.+..++|+++..+|..++++|+.+... +|++|++++
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~ 91 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLLA 91 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGGT
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChhh
Confidence 999999999865 468999999999999999999999999999999999999999999999876544 688999999
Q ss_pred cccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCH
Q 000069 323 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 372 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSV 372 (2442)
+|+|++.+++||+||++|++..+.||+||++|.|+...+ |.|++....
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~--~~~~~~~~~ 139 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA--INFVTNEDV 139 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEE--EEEEETTTH
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEEcchHH
Confidence 999999999999999999999999999999999976654 455666543
No 38
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.68 E-value=1.9e-17 Score=199.85 Aligned_cols=118 Identities=21% Similarity=0.294 Sum_probs=84.2
Q ss_pred cHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccc
Q 000069 242 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 321 (2442)
Q Consensus 242 GKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAG 321 (2442)
.|...|..++... .+.++|||+.....++.|..+|...++.+..++|+++..+|..++++|+.+... +|++|+++
T Consensus 343 ~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~---VLVaT~~l 417 (508)
T 3fho_A 343 HKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSK---VLVTTNVI 417 (508)
T ss_dssp HHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCC---CCEECC--
T ss_pred HHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe---EEEeCChh
Confidence 3667777777654 467999999999999999999999999999999999999999999999876554 79999999
Q ss_pred ccccCCcccCEEEEeCCC------CCccccchhhccccccCCcccEEEE
Q 000069 322 GVGVNLQAADTVIIFDTD------WNPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 322 GEGLNLQaADTVIIYDpP------WNPardeQAIGRAHRIGQKKEVrVY 364 (2442)
++|||++.+++||+||++ +++..+.||+||++|.|+...+.+|
T Consensus 418 ~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 418 ARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp ---CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred hcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 999999999999999999 7899999999999999976665554
No 39
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=170.30 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=106.4
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+..|.++|.. .+.|+|||+++...++.|..+|...|+.+..++|+++..+|..++++|+.+... +|++|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEcC
Confidence 45689999888865 356899999999999999999999999999999999999999999999876544 789999
Q ss_pred ccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCC
Q 000069 320 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 320 AGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
++++|||++.+++||+||++||+..++||+||++|.|++..+ +.|++..
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 999999999999999999999999999999999999997654 4455543
No 40
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=7.8e-16 Score=161.33 Aligned_cols=123 Identities=18% Similarity=0.260 Sum_probs=105.0
Q ss_pred cHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccc
Q 000069 242 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 321 (2442)
Q Consensus 242 GKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAG 321 (2442)
.|+.+|.++|..+ .+.|+|||+++...++.|..+|...|+.+..++|+++..+|..++++|+.+... +|++|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecch
Confidence 4899999998765 467999999999999999999999999999999999999999999999876544 78899999
Q ss_pred ccccCCcccCEEEEeCCC------CCccccchhhccccccCCcccEEEEEEecCCC
Q 000069 322 GVGVNLQAADTVIIFDTD------WNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 371 (2442)
Q Consensus 322 GEGLNLQaADTVIIYDpP------WNPardeQAIGRAHRIGQKKEVrVYRLITedS 371 (2442)
++|||++.+++||+||+| |++..++||+||++|.|+. -.+|.|+..+.
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 999999999999999999 5668899999999999965 45566776654
No 41
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.64 E-value=5.7e-16 Score=204.31 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=96.1
Q ss_pred cCCCeEEEEEchHHHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEE
Q 000069 256 ATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 333 (2442)
Q Consensus 256 atGhKVLIFSQFtdTLDILED~Lrkr--GIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTV 333 (2442)
..++++||||+....++.+.++|... ++++..++|.++..+|.+++++|+.+... +|++|+++++|||++.+++|
T Consensus 810 ~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~---VLVaT~v~e~GiDip~v~~V 886 (1151)
T 2eyq_A 810 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVCTTIIETGIDIPTANTI 886 (1151)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC---EEEESSTTGGGSCCTTEEEE
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCc---EEEECCcceeeecccCCcEE
Confidence 35789999999999999999999877 89999999999999999999999876544 79999999999999999999
Q ss_pred EEeCC-CCCccccchhhccccccCCcccEEEEEEecC
Q 000069 334 IIFDT-DWNPQVDLQAQARAHRIGQKRDVLVLRFETV 369 (2442)
Q Consensus 334 IIYDp-PWNPardeQAIGRAHRIGQKKEVrVYRLITe 369 (2442)
|+++. .|++..+.||+||++|.|+...+ |.|+..
T Consensus 887 Ii~~~~~~~l~~l~Qr~GRvgR~g~~g~~--~ll~~~ 921 (1151)
T 2eyq_A 887 IIERADHFGLAQLHQLRGRVGRSHHQAYA--WLLTPH 921 (1151)
T ss_dssp EETTTTSSCHHHHHHHHTTCCBTTBCEEE--EEEECC
T ss_pred EEeCCCCCCHHHHHHHHhccCcCCCceEE--EEEECC
Confidence 99998 69999999999999999975544 444443
No 42
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.41 E-value=3.8e-17 Score=170.87 Aligned_cols=119 Identities=19% Similarity=0.304 Sum_probs=107.2
Q ss_pred ccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecc
Q 000069 241 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 320 (2442)
Q Consensus 241 SGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRA 320 (2442)
..|+.+|.++|.. ..+.|+|||+++...++.|..+|...++.+..++|+++..+|..++++|+.+... +|++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~---vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN---VLVATDV 89 (170)
Confidence 4588888888875 3468999999999999999999999999999999999999999999999766433 7899999
Q ss_pred cccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEE
Q 000069 321 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 321 GGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVY 364 (2442)
+++|||++.+++||+||++|++..++||+||++|.|+...+.++
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 133 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 133 (170)
Confidence 99999999999999999999999999999999999997765443
No 43
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.60 E-value=3.1e-15 Score=162.56 Aligned_cols=134 Identities=19% Similarity=0.259 Sum_probs=113.5
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.+|.+++... .+.++|||+.....++.|..+|...|+.+..++|+++..+|..++++|+.+... +|++|+
T Consensus 15 ~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT~ 89 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVATD 89 (212)
T ss_dssp TTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEECT
T ss_pred HHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEecC
Confidence 356999999999743 478999999999999999999999999999999999999999999999876544 689999
Q ss_pred ccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCCCHHHHHHHHHHH
Q 000069 320 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 382 (2442)
Q Consensus 320 AGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEErILERaqr 382 (2442)
++++|||++.+++||+||++|++..+.||+||++|.|+.. .+|.|++.. |...+....+
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~--~~~~~~~i~~ 148 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR--ERRDVEALER 148 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG--GHHHHHHHHH
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh--HHHHHHHHHH
Confidence 9999999999999999999999999999999999999764 445555554 3344444333
No 44
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.60 E-value=6.2e-15 Score=192.49 Aligned_cols=111 Identities=15% Similarity=0.080 Sum_probs=99.1
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhcCce---------------------------------------EEEEeCCCCHHHH
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFKQYR---------------------------------------YLRLDGHTSGGDR 297 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~LrkrGIk---------------------------------------ylRLDGSTS~dER 297 (2442)
.+.++|||+..+..++.+..+|...++. +..++|+++..+|
T Consensus 342 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR 421 (1010)
T 2xgj_A 342 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 421 (1010)
T ss_dssp TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHH
Confidence 3468999999999999999888764432 7889999999999
Q ss_pred HHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEE----eCC----CCCccccchhhccccccCCcccEEEEEEecC
Q 000069 298 GALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FDT----DWNPQVDLQAQARAHRIGQKRDVLVLRFETV 369 (2442)
Q Consensus 298 eeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVII----YDp----PWNPardeQAIGRAHRIGQKKEVrVYRLITe 369 (2442)
..+++.|+.+... +|++|+++++|||++.+++||+ ||. +|++..+.|++||++|.|+....++|.|+..
T Consensus 422 ~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~ 498 (1010)
T 2xgj_A 422 EVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDE 498 (1010)
T ss_dssp HHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECS
T ss_pred HHHHHHHhcCCCc---EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECC
Confidence 9999999876544 7999999999999999999999 999 9999999999999999999888888888886
Q ss_pred C
Q 000069 370 Q 370 (2442)
Q Consensus 370 d 370 (2442)
.
T Consensus 499 ~ 499 (1010)
T 2xgj_A 499 K 499 (1010)
T ss_dssp C
T ss_pred C
Confidence 5
No 45
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.59 E-value=1.5e-14 Score=180.44 Aligned_cols=113 Identities=17% Similarity=0.119 Sum_probs=94.3
Q ss_pred cCCCeEEEEEchHHHHHHHHHHHhhcC------------------------------------ceEEEEeCCCCHHHHHH
Q 000069 256 ATDHRVLFFSTMTRLLDVMEDYLTFKQ------------------------------------YRYLRLDGHTSGGDRGA 299 (2442)
Q Consensus 256 atGhKVLIFSQFtdTLDILED~LrkrG------------------------------------IkylRLDGSTS~dERee 299 (2442)
..++++|||+..+...+.+...|.... ..+..++|+++..+|..
T Consensus 250 ~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~ 329 (715)
T 2va8_A 250 SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDL 329 (715)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHH
Confidence 357899999999999888888886431 24788999999999999
Q ss_pred HHHHHhcCCCCceEEEeeecccccccCCcccCEEEE----eC-------CCCCccccchhhccccccCCcccEEEEEEec
Q 000069 300 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD-------TDWNPQVDLQAQARAHRIGQKRDVLVLRFET 368 (2442)
Q Consensus 300 IIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVII----YD-------pPWNPardeQAIGRAHRIGQKKEVrVYRLIT 368 (2442)
+.+.|..+... +|++|.++++|||++..++||. || .++++..+.||+||++|.|+.+.-.+|+|++
T Consensus 330 v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 406 (715)
T 2va8_A 330 IEEGFRQRKIK---VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVR 406 (715)
T ss_dssp HHHHHHTTCSC---EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECS
T ss_pred HHHHHHcCCCe---EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeC
Confidence 99999876443 7899999999999999999998 99 8999999999999999999988888888887
Q ss_pred CCC
Q 000069 369 VQT 371 (2442)
Q Consensus 369 edS 371 (2442)
...
T Consensus 407 ~~~ 409 (715)
T 2va8_A 407 DKE 409 (715)
T ss_dssp CGG
T ss_pred Cch
Confidence 654
No 46
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.3e-15 Score=198.10 Aligned_cols=122 Identities=15% Similarity=0.123 Sum_probs=100.9
Q ss_pred HHHHhhhhhc-CCCeEEEEEchHHHHHHHHHHHhhcCce---------------------------------------EE
Q 000069 247 LDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQYR---------------------------------------YL 286 (2442)
Q Consensus 247 LdrLL~KLra-tGhKVLIFSQFtdTLDILED~LrkrGIk---------------------------------------yl 286 (2442)
+..++..+.. .+.++|||+.....++.+..+|...++. +.
T Consensus 429 l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~ 508 (1108)
T 3l9o_A 429 IYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIG 508 (1108)
T ss_dssp HHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCee
Confidence 3334443333 3569999999999999999988654332 78
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccc--------cchhhccccccCCc
Q 000069 287 RLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQV--------DLQAQARAHRIGQK 358 (2442)
Q Consensus 287 RLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPar--------deQAIGRAHRIGQK 358 (2442)
.++|+++..+|..+++.|..+... +|++|+++++|||++.+++||+|+.+|++.. |.||+||++|.|+.
T Consensus 509 ~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d 585 (1108)
T 3l9o_A 509 IHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLD 585 (1108)
T ss_dssp EECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSC
T ss_pred eecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCC
Confidence 899999999999999999877554 7999999999999999999999999998876 88999999999998
Q ss_pred ccEEEEEEecCCC
Q 000069 359 RDVLVLRFETVQT 371 (2442)
Q Consensus 359 KEVrVYRLITedS 371 (2442)
...++|.++....
T Consensus 586 ~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 586 DRGIVIMMIDEKM 598 (1108)
T ss_dssp SSEEEEEEECCCC
T ss_pred CceEEEEEecCCc
Confidence 8889998887764
No 47
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.55 E-value=4e-14 Score=176.78 Aligned_cols=115 Identities=20% Similarity=0.167 Sum_probs=98.5
Q ss_pred cCCCeEEEEEchHHHHHHHHHHHhhc------------------------------CceEEEEeCCCCHHHHHHHHHHHh
Q 000069 256 ATDHRVLFFSTMTRLLDVMEDYLTFK------------------------------QYRYLRLDGHTSGGDRGALIDKFN 305 (2442)
Q Consensus 256 atGhKVLIFSQFtdTLDILED~Lrkr------------------------------GIkylRLDGSTS~dEReeIIDrFN 305 (2442)
..++++|||+..+...+.+...|... ++.+..++|+++.++|..+.+.|.
T Consensus 240 ~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 319 (702)
T 2p6r_A 240 AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFR 319 (702)
T ss_dssp HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHH
T ss_pred hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHH
Confidence 35789999999998888877777532 134677999999999999999998
Q ss_pred cCCCCceEEEeeecccccccCCcccCEEEE----eC---CCCCccccchhhccccccCCcccEEEEEEecCCCHH
Q 000069 306 QQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD---TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 373 (2442)
Q Consensus 306 apDS~i~VFLLSTRAGGEGLNLQaADTVII----YD---pPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVE 373 (2442)
.+... +|++|.+++.|||++..++||. || .+|++..+.||+||++|.|+.+.-++|.|+.....+
T Consensus 320 ~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 320 RGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp TTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred CCCCe---EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHH
Confidence 76443 7899999999999999999998 77 789999999999999999998888999999887654
No 48
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.54 E-value=5.4e-14 Score=176.15 Aligned_cols=116 Identities=16% Similarity=0.047 Sum_probs=99.4
Q ss_pred cCCCeEEEEEchHHHHHHHHHHHhhc------------------C---------------ceEEEEeCCCCHHHHHHHHH
Q 000069 256 ATDHRVLFFSTMTRLLDVMEDYLTFK------------------Q---------------YRYLRLDGHTSGGDRGALID 302 (2442)
Q Consensus 256 atGhKVLIFSQFtdTLDILED~Lrkr------------------G---------------IkylRLDGSTS~dEReeIID 302 (2442)
..++++|||+..+...+.+...|... + ..+..++|+++..+|..+.+
T Consensus 235 ~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 314 (720)
T 2zj8_A 235 RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEE 314 (720)
T ss_dssp HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 35789999999999888887777542 1 24889999999999999999
Q ss_pred HHhcCCCCceEEEeeecccccccCCcccCEEEE----eC----CCCCccccchhhccccccCCcccEEEEEEecCCCHHH
Q 000069 303 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD----TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 374 (2442)
Q Consensus 303 rFNapDS~i~VFLLSTRAGGEGLNLQaADTVII----YD----pPWNPardeQAIGRAHRIGQKKEVrVYRLITedSVEE 374 (2442)
.|+.+... +|++|.++++|||++..++||. || .++++..+.||+||++|.|+.+.-.+|.|++....+.
T Consensus 315 ~f~~g~~~---vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 315 NFRKGIIK---AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HHHTTSSC---EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HHHCCCCe---EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 99876443 7899999999999999999998 88 6899999999999999999988888999998877553
No 49
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.53 E-value=3.4e-14 Score=163.68 Aligned_cols=124 Identities=19% Similarity=0.266 Sum_probs=107.4
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.+|.+++.... +.++|||+.....++.|..+|...|+.+..++|+++..+|..+++.|+.+... +|++|+
T Consensus 12 ~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT~ 86 (300)
T 3i32_A 12 VRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVATD 86 (300)
T ss_dssp SSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEECS
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEec
Confidence 3569999999997654 78999999999999999999999999999999999999999999999877544 799999
Q ss_pred ccccccCCcccCEEEEeCCCCCccccchhhccccccCCcccEEEEEEecCC
Q 000069 320 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 320 AGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
++++|||++.+++||+||++|++..+.||+||++|.|+.. .+|.|++..
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~ 135 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 135 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSS
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChH
Confidence 9999999999999999999999999999999999999864 455666655
No 50
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.52 E-value=4.2e-15 Score=189.79 Aligned_cols=108 Identities=16% Similarity=0.225 Sum_probs=86.3
Q ss_pred hhcCCCeEEEEEchH--------HHHHHHHHHHhh---cCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc
Q 000069 254 LKATDHRVLFFSTMT--------RLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 322 (2442)
Q Consensus 254 LratGhKVLIFSQFt--------dTLDILED~Lrk---rGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG 322 (2442)
....+++++|||... ..+..+.+.|.. .++.+..+||+++..+|..++++|+.+... +|++|++++
T Consensus 574 ~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~---ILVaT~vie 650 (780)
T 1gm5_A 574 EVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD---ILVSTTVIE 650 (780)
T ss_dssp HTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS---BCCCSSCCC
T ss_pred HHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe---EEEECCCCC
Confidence 334566777777543 245667777766 478899999999999999999999876544 799999999
Q ss_pred cccCCcccCEEEEeCCCC-CccccchhhccccccCCcccEEEE
Q 000069 323 VGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 323 EGLNLQaADTVIIYDpPW-NPardeQAIGRAHRIGQKKEVrVY 364 (2442)
+|||++++++||+||+++ +...+.||+||++|.|+...+.++
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 999999999999999985 788899999999999987665544
No 51
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.49 E-value=7.8e-14 Score=182.05 Aligned_cols=131 Identities=16% Similarity=0.068 Sum_probs=108.3
Q ss_pred cHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCc--------------------------------------
Q 000069 242 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQY-------------------------------------- 283 (2442)
Q Consensus 242 GKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGI-------------------------------------- 283 (2442)
.++..|.++|... ...++|||+.....++.+..+|...++
T Consensus 322 ~~~~~li~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 322 KTWPEIVNYLRKR--ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp THHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 3566666666542 457999999999999999999876555
Q ss_pred -eEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCC---------Cccccchhhcccc
Q 000069 284 -RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW---------NPQVDLQAQARAH 353 (2442)
Q Consensus 284 -kylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPW---------NPardeQAIGRAH 353 (2442)
.+..++|+++..+|..+++.|+.+..+ +|++|.++++|||++. .+||+++.++ ++..|.|++||++
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~G~~k---VLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAG 475 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSKGFIK---VLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAG 475 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCCS---EEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGC
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCc---EEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccc
Confidence 478999999999999999999877654 7999999999999999 7777766655 8999999999999
Q ss_pred ccCCcccEEEEEEecCCCHHHHHHH
Q 000069 354 RIGQKRDVLVLRFETVQTVEEQVRA 378 (2442)
Q Consensus 354 RIGQKKEVrVYRLITedSVEErILE 378 (2442)
|.|+...-++|.++..+..+..++.
T Consensus 476 R~G~~~~G~vi~l~~~~~~~~~~~~ 500 (997)
T 4a4z_A 476 RRGLDSTGTVIVMAYNSPLSIATFK 500 (997)
T ss_dssp CTTTCSSEEEEEECCSSCCCHHHHH
T ss_pred cCCCCcceEEEEecCCCcchHHHHH
Confidence 9999988888888876666655544
No 52
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.44 E-value=5e-13 Score=176.08 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=72.6
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEE-EEeCCCCHHHHHHHHHHHhcCCCCceEEEee----
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYL-RLDGHTSGGDRGALIDKFNQQDSPFFIFLLS---- 317 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkyl-RLDGSTS~dEReeIIDrFNapDS~i~VFLLS---- 317 (2442)
|...|.++|.. .+.++|||+.....++.|..+|...|+.+. .++| +|.+ +++|+.+... +|++
T Consensus 297 k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~---VLVatas~ 364 (1104)
T 4ddu_A 297 SKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKIN---ILIGVQAY 364 (1104)
T ss_dssp CHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCS---EEEEETTT
T ss_pred HHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCC---EEEEecCC
Confidence 44555666655 258999999999999999999999999998 8888 3555 9999877554 5677
Q ss_pred ecccccccCCcc-cCEEEEeCCCC
Q 000069 318 IRAGGVGVNLQA-ADTVIIFDTDW 340 (2442)
Q Consensus 318 TRAGGEGLNLQa-ADTVIIYDpPW 340 (2442)
|+++++|||++. +++||+||+|-
T Consensus 365 TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 365 YGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999998
No 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.41 E-value=1.4e-13 Score=163.81 Aligned_cols=95 Identities=18% Similarity=0.190 Sum_probs=84.5
Q ss_pred CCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCE-----
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT----- 332 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADT----- 332 (2442)
+.++|||+.....++.+.+.|...++++..++|. +|.+++++|+.+... +|++|+++++|||+. .++
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~g 242 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDPR 242 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEECC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEecC
Confidence 5689999999999999999999999999999996 688899999877555 799999999999998 544
Q ss_pred ------------EEEeCCCCCccccchhhccccccCCccc
Q 000069 333 ------------VIIFDTDWNPQVDLQAQARAHRIGQKRD 360 (2442)
Q Consensus 333 ------------VIIYDpPWNPardeQAIGRAHRIGQKKE 360 (2442)
||+|+.+.+...+.||+||++|.|....
T Consensus 243 ~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~ 282 (431)
T 2v6i_A 243 KTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLG 282 (431)
T ss_dssp EEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred ccccceecccceeecccccCCHHHHHHhhhccCCCCCCCC
Confidence 5788999999999999999999996543
No 54
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.37 E-value=1.2e-13 Score=165.06 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=84.1
Q ss_pred CCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeC
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFD 337 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYD 337 (2442)
+.++|||+.....++.|..+|...|+.+..++|.+ +.+++++|+.+... +|++|+++++|||+.. ++||+||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~~ 259 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDPR 259 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEECC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEECC
Confidence 56899999999999999999999999999999865 46789999876544 7999999999999999 9999998
Q ss_pred --------------------CCCCccccchhhccccccCCc
Q 000069 338 --------------------TDWNPQVDLQAQARAHRIGQK 358 (2442)
Q Consensus 338 --------------------pPWNPardeQAIGRAHRIGQK 358 (2442)
.+.++..+.||+||++|.|..
T Consensus 260 ~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~ 300 (451)
T 2jlq_A 260 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 300 (451)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred CcccccccccccceeeecccccCCHHHHHHhccccCCCCCC
Confidence 888999999999999999973
No 55
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.31 E-value=5.8e-12 Score=165.35 Aligned_cols=127 Identities=12% Similarity=0.130 Sum_probs=94.5
Q ss_pred HHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEee----ec
Q 000069 244 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS----IR 319 (2442)
Q Consensus 244 LEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLS----TR 319 (2442)
...|.++|..+ +.++||||.....++.|.++|... +++..++|.+ ..++++|+.+.. . +|++ |+
T Consensus 264 ~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~--~-VLVaTas~Td 331 (1054)
T 1gku_B 264 ISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEI--D-HLIGTAHYYG 331 (1054)
T ss_dssp TTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSC--S-EEEEECC---
T ss_pred HHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCC--c-EEEEecCCCC
Confidence 33445555443 678999999999999999999888 9999999987 378899987654 3 5666 89
Q ss_pred ccccccCCccc-CEEEEeCCC-----------------------------------------------------------
Q 000069 320 AGGVGVNLQAA-DTVIIFDTD----------------------------------------------------------- 339 (2442)
Q Consensus 320 AGGEGLNLQaA-DTVIIYDpP----------------------------------------------------------- 339 (2442)
++++|||+..+ ++||+||+|
T Consensus 332 v~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (1054)
T 1gku_B 332 TLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQA 411 (1054)
T ss_dssp ---CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSC
T ss_pred eeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999996 999999999
Q ss_pred ------------CCccccchhhccccccCCcc--cEEEEEEecCCCHHHHHHHHHHHHHHH
Q 000069 340 ------------WNPQVDLQAQARAHRIGQKR--DVLVLRFETVQTVEEQVRASAEHKLGV 386 (2442)
Q Consensus 340 ------------WNPardeQAIGRAHRIGQKK--EVrVYRLITedSVEErILERaqrKLdL 386 (2442)
.+...|+||+||++|.|... ...+|.+ .+ |..++..+.++++.
T Consensus 412 ~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~--~~--d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 412 KDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLL--ED--DSELLSAFIERAKL 468 (1054)
T ss_dssp SSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEE--CS--CHHHHHHHHHHHHT
T ss_pred cceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEE--ec--CHHHHHHHHHHHhh
Confidence 78899999999999988764 3444433 33 44566666666544
No 56
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.31 E-value=1.5e-12 Score=155.73 Aligned_cols=93 Identities=17% Similarity=0.151 Sum_probs=77.3
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEE-
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII- 335 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVII- 335 (2442)
.++++|||+.....++.+.+.|+..++++..++| ++|.+++++|+.+... +|++|+++++|||+. +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEeC
Confidence 3779999999999999999999999999999999 4688999999876554 789999999999999 999986
Q ss_pred ------------------eCCCCCccccchhhccccccCC
Q 000069 336 ------------------FDTDWNPQVDLQAQARAHRIGQ 357 (2442)
Q Consensus 336 ------------------YDpPWNPardeQAIGRAHRIGQ 357 (2442)
||.++++..+.||+||++|.|.
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCC
Confidence 8999999999999999999853
No 57
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.30 E-value=9.8e-13 Score=165.83 Aligned_cols=99 Identities=17% Similarity=0.204 Sum_probs=86.3
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEE-
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII- 335 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVII- 335 (2442)
.+.++|||+.....++.+.++|...++++..++| ++|.+++++|+.+... +|++|+++++|||+. +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEEC
Confidence 4789999999999999999999999999999999 3799999999876544 789999999999999 999997
Q ss_pred -------------------eCCCCCccccchhhccccccC-CcccEEE
Q 000069 336 -------------------FDTDWNPQVDLQAQARAHRIG-QKRDVLV 363 (2442)
Q Consensus 336 -------------------YDpPWNPardeQAIGRAHRIG-QKKEVrV 363 (2442)
||.|.++..+.||+||++|.| +.-.+++
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~ 528 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYH 528 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEE
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEE
Confidence 567788899999999999994 4434433
No 58
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.26 E-value=1.5e-12 Score=156.18 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=86.3
Q ss_pred CCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEE--
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII-- 335 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVII-- 335 (2442)
+.++|||+.....++.|.++|+..++.+..++|. +|..++++|+.+... +|++|+++++|||+.. ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~G 261 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDCR 261 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEECC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEECC
Confidence 6799999999999999999999999999999984 678889999766544 7899999999999999 99998
Q ss_pred ------------------eCCCCCccccchhhccccccCCcccEEEEEEecCC
Q 000069 336 ------------------FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 336 ------------------YDpPWNPardeQAIGRAHRIGQKKEVrVYRLITed 370 (2442)
||.|+++..+.||+||++|.|.... ..|.|+...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G-~~~~~~~~~ 313 (459)
T 2z83_A 262 KSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVG-DEYHYGGAT 313 (459)
T ss_dssp EECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCC
T ss_pred cccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCC-eEEEEEccc
Confidence 8899999999999999999996332 334455543
No 59
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.25 E-value=3.6e-12 Score=159.26 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=88.1
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEE---
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV--- 333 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTV--- 333 (2442)
.+.++|||+.....++.|.++|...++++..++|. +|.+++++|+.+... +|++|+++++|||+. +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEEC
Confidence 36799999999999999999999999999999984 788899999877554 799999999999996 8888
Q ss_pred -----------------EEeCCCCCccccchhhccccccCCcccEEEEEEec
Q 000069 334 -----------------IIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 368 (2442)
Q Consensus 334 -----------------IIYDpPWNPardeQAIGRAHRIGQKKEVrVYRLIT 368 (2442)
|+||.|-++..++||+||++|.|.... .+|.|++
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~ 476 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSG 476 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECS
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEcc
Confidence 777778888899999999999986443 2455565
No 60
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.21 E-value=1.3e-11 Score=155.97 Aligned_cols=107 Identities=19% Similarity=0.250 Sum_probs=93.3
Q ss_pred EEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCC--
Q 000069 261 VLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT-- 338 (2442)
Q Consensus 261 VLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDp-- 338 (2442)
-|||+.....++.+..+|...++.+..++|+++..+|..+++.|+.++..+. +|++|++++.|||+ .+++||+|+.
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~-VLVATdi~e~GlDi-~v~~VI~~~~~k 400 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK-ILVATDAIGMGLNL-SIRRIIFYSLIK 400 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCC-EEEECGGGGSSCCC-CBSEEEESCSBC
T ss_pred CEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeE-EEEeCcHHHCCcCc-CccEEEECCccc
Confidence 4778888999999999999999999999999999999999999987333333 68999999999999 9999999999
Q ss_pred ------------CCCccccchhhccccccCCc-ccEEEEEEecC
Q 000069 339 ------------DWNPQVDLQAQARAHRIGQK-RDVLVLRFETV 369 (2442)
Q Consensus 339 ------------PWNPardeQAIGRAHRIGQK-KEVrVYRLITe 369 (2442)
+++...+.||+||++|.|+. ..-.||++...
T Consensus 401 ~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 401 PSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp -----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred cccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 44667766544
No 61
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.21 E-value=2.1e-11 Score=153.83 Aligned_cols=101 Identities=18% Similarity=0.105 Sum_probs=84.1
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEE--
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI-- 334 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVI-- 334 (2442)
.+.++|||+.....++.|.++|+..++.+..++|+++..+ |.+.. ..+|++|+++++|||+. +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~---~~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIG---DVVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSS---CEEEEECTTHHHHCCCC-BSEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCC---CcEEEECChHHccCCCC-CcEEEec
Confidence 4789999999999999999999999999999999998764 32322 25899999999999986 99988
Q ss_pred --------EeC-----------CCCCccccchhhccccccCCcccEEEEEEecCCCH
Q 000069 335 --------IFD-----------TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 372 (2442)
Q Consensus 335 --------IYD-----------pPWNPardeQAIGRAHRIGQKKEVrVYRLITedSV 372 (2442)
+|| .|.+...++||+||++| |..-. |+|++....
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~---i~lvt~~e~ 516 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI---YRFVTPGER 516 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE---EEESCCCCB
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE---EEEEecchh
Confidence 677 77788899999999999 65432 777776543
No 62
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.19 E-value=1.2e-10 Score=152.95 Aligned_cols=108 Identities=13% Similarity=0.094 Sum_probs=84.3
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhcC------------ceE-EEEeCC----------C----------CH---------
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFKQ------------YRY-LRLDGH----------T----------SG--------- 294 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~LrkrG------------Iky-lRLDGS----------T----------S~--------- 294 (2442)
.+.+.||||..+..+..+.+.|...+ +++ +.++|. + +.
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~ 615 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAA 615 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHH
Confidence 35689999999999999988886644 455 445543 1 11
Q ss_pred --------------------HHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEEeCCCCCccccchhhccccc
Q 000069 295 --------------------GDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHR 354 (2442)
Q Consensus 295 --------------------dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVIIYDpPWNPardeQAIGRAHR 354 (2442)
..|.+++++|..+... +||+++.+.+|+|.+.+ .++++|.+...+.++||+||+.|
T Consensus 616 I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~---ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR 691 (1038)
T 2w00_A 616 IREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID---LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNR 691 (1038)
T ss_dssp HHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS---EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe---EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCc
Confidence 1488899999876533 68888999999999999 67889999999999999999999
Q ss_pred cCCc-c-cEEEEEEec
Q 000069 355 IGQK-R-DVLVLRFET 368 (2442)
Q Consensus 355 IGQK-K-EVrVYRLIT 368 (2442)
.+.. | ...|+.|+.
T Consensus 692 ~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 692 IYDATKTFGNIVTFRD 707 (1038)
T ss_dssp CCCTTCCSEEEEESSC
T ss_pred CCCCCCCcEEEEEccc
Confidence 9874 3 367777763
No 63
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.19 E-value=8.4e-11 Score=147.93 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=109.2
Q ss_pred ccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecc
Q 000069 241 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 320 (2442)
Q Consensus 241 SGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRA 320 (2442)
.+++..|...|..+...+.++|||+.....++.|.++|...|+++..++|+++..+|.+++++|+.+... +|++|++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccCh
Confidence 3567777777777777889999999999999999999999999999999999999999999999876443 7899999
Q ss_pred cccccCCcccCEEEEeCC-----CCCccccchhhccccccCCcccEEEEEEecCCC
Q 000069 321 GGVGVNLQAADTVIIFDT-----DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 371 (2442)
Q Consensus 321 GGEGLNLQaADTVIIYDp-----PWNPardeQAIGRAHRIGQKKEVrVYRLITedS 371 (2442)
+++|+|+..+++||+||. +|++..++||+||++|.|. -.++.|+...+
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 999999999999999998 8999999999999999863 24555666554
No 64
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.16 E-value=4.2e-11 Score=153.04 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=94.8
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhh-----------cCceEEEEeCCCCHHHHHHHHHHHhcC--CCCceEEEeeeccccc
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTF-----------KQYRYLRLDGHTSGGDRGALIDKFNQQ--DSPFFIFLLSIRAGGV 323 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~Lrk-----------rGIkylRLDGSTS~dEReeIIDrFNap--DS~i~VFLLSTRAGGE 323 (2442)
.+.++|||+.....++.+.+.|.. .++.+..++|+++..+|.++++.|... ....+-+|++|+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 467999999999999999888864 588999999999999999999999610 0224557999999999
Q ss_pred ccCCcccCEEEEeCC------------------CCCccccchhhccccccCCcccEEEEEEecCCCH
Q 000069 324 GVNLQAADTVIIFDT------------------DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 372 (2442)
Q Consensus 324 GLNLQaADTVIIYDp------------------PWNPardeQAIGRAHRIGQKKEVrVYRLITedSV 372 (2442)
|||+..+++||.|+. +.+...+.||+||++|. +.-.+|+|+++...
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 999999999999776 78889999999999998 34567788776544
No 65
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.14 E-value=3.6e-10 Score=142.21 Aligned_cols=125 Identities=18% Similarity=0.192 Sum_probs=108.9
Q ss_pred ccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecc
Q 000069 241 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 320 (2442)
Q Consensus 241 SGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRA 320 (2442)
.+++..|...|..+...+.++|||+.....++.|.++|...|+++..++|.++..+|.+++++|+.+... +|++|++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~~ 504 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGINL 504 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecch
Confidence 3566777777777777789999999999999999999999999999999999999999999999876544 7899999
Q ss_pred cccccCCcccCEEEEeCC-----CCCccccchhhccccccCCcccEEEEEEecCCC
Q 000069 321 GGVGVNLQAADTVIIFDT-----DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 371 (2442)
Q Consensus 321 GGEGLNLQaADTVIIYDp-----PWNPardeQAIGRAHRIGQKKEVrVYRLITedS 371 (2442)
+++|+|+..+++||+||. ++++..++||+||++|.+ .-.++.|+...+
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 557 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKIT 557 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCC
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCC
Confidence 999999999999999998 899999999999999972 334566676654
No 66
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.89 E-value=1.6e-08 Score=138.87 Aligned_cols=84 Identities=18% Similarity=0.102 Sum_probs=67.2
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEE----eC------CCCCccccchhhcccc
Q 000069 284 RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD------TDWNPQVDLQAQARAH 353 (2442)
Q Consensus 284 kylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVII----YD------pPWNPardeQAIGRAH 353 (2442)
.+..+||+++..+|..+.+.|..+.-. +|++|..++.||||..-.+||. || .+.++..+.|++||++
T Consensus 1215 GIa~hHagL~~~~R~~VE~lF~~G~i~---VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAG 1291 (1724)
T 4f92_B 1215 GVGYLHEGLSPMERRLVEQLFSSGAIQ---VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHAN 1291 (1724)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHHTSBC---EEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBC
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCe---EEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhcccc
Confidence 467899999999999999999877544 6889999999999997655552 33 2467788999999999
Q ss_pred ccCCcccEEEEEEecCC
Q 000069 354 RIGQKRDVLVLRFETVQ 370 (2442)
Q Consensus 354 RIGQKKEVrVYRLITed 370 (2442)
|.|....-+++.|+...
T Consensus 1292 R~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1292 RPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp CTTTCSCEEEEEEEEGG
T ss_pred CCCCCCceEEEEEecch
Confidence 99987666666666544
No 67
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.83 E-value=1.2e-08 Score=140.02 Aligned_cols=85 Identities=20% Similarity=0.150 Sum_probs=68.9
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccccccCCcccCEEEE----eCCC------CCccccchhhcccc
Q 000069 284 RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FDTD------WNPQVDLQAQARAH 353 (2442)
Q Consensus 284 kylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGEGLNLQaADTVII----YDpP------WNPardeQAIGRAH 353 (2442)
.+...||+++..+|..+.+.|+++.-. +|++|..++.||||...+.||. ||+. .++..+.|++|||+
T Consensus 380 Gva~HHagL~~~~R~~vE~~F~~G~i~---vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAG 456 (1724)
T 4f92_B 380 GFAIHHAGMTRVDRTLVEDLFADKHIQ---VLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAG 456 (1724)
T ss_dssp TEEEECSSSCTHHHHHHHHHHHTTCCC---EEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBS
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCCe---EEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhcc
Confidence 467899999999999999999877544 6899999999999998777773 6654 46788999999999
Q ss_pred ccCCcccEEEEEEecCCC
Q 000069 354 RIGQKRDVLVLRFETVQT 371 (2442)
Q Consensus 354 RIGQKKEVrVYRLITedS 371 (2442)
|.|....-.++.++..+.
T Consensus 457 R~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 457 RPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp CTTTCSCEEEEEEEESTT
T ss_pred CCCCCCccEEEEEecchh
Confidence 999766655555565554
No 68
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.83 E-value=3.6e-09 Score=136.00 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=101.6
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.+|.++|......+.++||||......+.|..+|...|+.+..|+|.....+|..+...|+.+ . ++|+|+
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~---VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--A---VTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--C---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--e---EEEeCC
Confidence 34589999998887666788999999999999999999999999999999998877776555455322 2 799999
Q ss_pred ccccccCCc--------ccCEEEEeCCCCCccccchhhccccccCCcccEE
Q 000069 320 AGGVGVNLQ--------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 362 (2442)
Q Consensus 320 AGGEGLNLQ--------aADTVIIYDpPWNPardeQAIGRAHRIGQKKEVr 362 (2442)
.+|+|+|+. ...+||+||.|-++..|.||+||++|.|..-...
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~ 539 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQ 539 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEE
Confidence 999999999 6789999999999999999999999999865543
No 69
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.78 E-value=1.1e-08 Score=129.88 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=100.6
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.+|.+.+......+.+|||||......+.|..+|...|+.+..++|.....+|..+...|..+ . ++|+|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~---VtVATd 530 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--M---VTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--C---EEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--e---EEEEcc
Confidence 34699999999988777789999999999999999999999999999999985555554445556432 2 799999
Q ss_pred ccccccCCc--------ccCEEEEeCCCCCccccchhhccccccCCcccEE
Q 000069 320 AGGVGVNLQ--------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 362 (2442)
Q Consensus 320 AGGEGLNLQ--------aADTVIIYDpPWNPardeQAIGRAHRIGQKKEVr 362 (2442)
.+|+|+++. ...+||+||.|-++..+.||+||++|.|..-...
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~ 581 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESI 581 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEE
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEE
Confidence 999999997 5679999999999999999999999999876543
No 70
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.71 E-value=1.8e-08 Score=129.56 Aligned_cols=118 Identities=13% Similarity=0.107 Sum_probs=103.4
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.+|.+++......+..|||||......+.|..+|...|+++..|+|.....+|..+.+.|+.+ . ++|+|+
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~---VtIATn 497 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--A---VTIATN 497 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--C---EEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEecc
Confidence 34699999999987777889999999999999999999999999999999998777777677777543 2 899999
Q ss_pred ccccccCCccc-------------------------------------CEEEEeCCCCCccccchhhccccccCCcccEE
Q 000069 320 AGGVGVNLQAA-------------------------------------DTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 362 (2442)
Q Consensus 320 AGGEGLNLQaA-------------------------------------DTVIIYDpPWNPardeQAIGRAHRIGQKKEVr 362 (2442)
.+|+|+++... .+||+||.|-++..|.||+||++|.|..-...
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~ 577 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSR 577 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEE
Confidence 99999999863 59999999999999999999999999865543
No 71
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.65 E-value=3.8e-08 Score=127.08 Aligned_cols=118 Identities=13% Similarity=0.054 Sum_probs=101.6
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|+.+|.+.+......++.|||||......+.|..+|...|+++..|+|.....+|..+.+.|+.+ . ++|+|+
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~---VtIATn 516 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--G---VTVATN 516 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--C---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEecc
Confidence 34599999998887777889999999999999999999999999999999998766666666666433 2 799999
Q ss_pred ccccccCCccc----------------------------------------------------CEEEEeCCCCCccccch
Q 000069 320 AGGVGVNLQAA----------------------------------------------------DTVIIFDTDWNPQVDLQ 347 (2442)
Q Consensus 320 AGGEGLNLQaA----------------------------------------------------DTVIIYDpPWNPardeQ 347 (2442)
.+|+|+++... .+||+||.|-++..|.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999863 49999999999999999
Q ss_pred hhccccccCCcccEE
Q 000069 348 AQARAHRIGQKRDVL 362 (2442)
Q Consensus 348 AIGRAHRIGQKKEVr 362 (2442)
|+||++|.|..-...
T Consensus 597 r~GRTGRqGdpG~s~ 611 (922)
T 1nkt_A 597 LRGRSGRQGDPGESR 611 (922)
T ss_dssp HHHTSSGGGCCEEEE
T ss_pred HhcccccCCCCeeEE
Confidence 999999999865533
No 72
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.15 E-value=1.1e-06 Score=98.37 Aligned_cols=75 Identities=11% Similarity=0.155 Sum_probs=56.6
Q ss_pred CCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhc-ccccEEEEEeccCCCCHHHHHHHHhhh
Q 000069 21 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY-QSSHRLLLTGTPLQNNLEELWALLNFL 99 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqL-kSrrRLLLTGTPLQNNLeELwSLLNFL 99 (2442)
...+|+|+||+.+.+... ....+|++|||||||++.+. .+...+..+ ...++|+|||||.+ ...+++.++.++
T Consensus 203 ~~~~I~v~T~~~l~~~~~---~~~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l~lSATp~~-~~~~~~~l~~l~ 276 (282)
T 1rif_A 203 NDAPVVVGTWQTVVKQPK---EWFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSLRD-GKANIMQYVGMF 276 (282)
T ss_dssp TTCSEEEECHHHHTTSCG---GGGGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEEEECSSCCT-TSTTHHHHHHHH
T ss_pred cCCcEEEEchHHHHhhHH---HHHhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEEEEeCCCCC-cchHHHHHHHhc
Confidence 568999999999976322 22346899999999999864 455555666 57889999999964 457778887777
Q ss_pred cC
Q 000069 100 LP 101 (2442)
Q Consensus 100 dP 101 (2442)
.|
T Consensus 277 g~ 278 (282)
T 1rif_A 277 GE 278 (282)
T ss_dssp CE
T ss_pred CC
Confidence 54
No 73
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.81 E-value=1.6e-05 Score=88.18 Aligned_cols=63 Identities=22% Similarity=0.193 Sum_probs=45.8
Q ss_pred CCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCCCH
Q 000069 22 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNL 89 (2442)
Q Consensus 22 KFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQNNL 89 (2442)
..+|+|+||+.+.+... .+ ..+|++|||||+|++.+.. +.+.+..+...++|+|||||.+++-
T Consensus 171 ~~~i~v~T~~~l~~~~~--~~-~~~~~llIiDEaH~l~~~~--~~~i~~~~~~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 171 LKPLTVSTYDSAYVNAE--KL-GNRFMLLIFDEVHHLPAES--YVQIAQMSIAPFRLGLTATFEREDG 233 (237)
T ss_dssp CCSEEEEEHHHHHHTHH--HH-TTTCSEEEEECSSCCCTTT--HHHHHHTCCCSEEEEEEESCC----
T ss_pred cCCEEEEeHHHHHhhHH--Hh-cccCCEEEEECCccCCChH--HHHHHHhccCCEEEEEecCCCCCCC
Confidence 46899999999976322 22 2469999999999998754 3445566788899999999987653
No 74
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.53 E-value=5.4e-05 Score=79.85 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=46.6
Q ss_pred hhhcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCc--ccHHHHHHHhcc-cccEEEEEecc
Q 000069 17 KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQ-SSHRLLLTGTP 84 (2442)
Q Consensus 17 qIl~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~--~SKLSKALKqLk-SrrRLLLTGTP 84 (2442)
..+...++|+|+||+.+.+......+.-.+|++|||||||++... ...+...+..+. ..++++||||+
T Consensus 115 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 185 (207)
T 2gxq_A 115 EALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATL 185 (207)
T ss_dssp HHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSC
T ss_pred HHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEec
Confidence 334456899999999987643333344457899999999998543 233344444443 45679999997
No 75
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.47 E-value=0.00013 Score=77.17 Aligned_cols=67 Identities=12% Similarity=0.157 Sum_probs=46.3
Q ss_pred hhcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcc--cHHHHHHHhcc-cccEEEEEecc
Q 000069 18 IVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ-SSHRLLLTGTP 84 (2442)
Q Consensus 18 Il~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~--SKLSKALKqLk-SrrRLLLTGTP 84 (2442)
.....++|+|+|++.+.....+..+...++++|||||||++.... ..+...+..+. ..++++||||+
T Consensus 118 ~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 187 (206)
T 1vec_A 118 RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATF 187 (206)
T ss_dssp HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred hcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeC
Confidence 344678999999999876443333444578999999999986532 22333334443 56789999998
No 76
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.44 E-value=6.9e-05 Score=80.63 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=47.5
Q ss_pred CCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcc--cHHHHHHHhcc-cccEEEEEeccCCCCHHH
Q 000069 21 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ-SSHRLLLTGTPLQNNLEE 91 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~--SKLSKALKqLk-SrrRLLLTGTPLQNNLeE 91 (2442)
.+++|+|+|++.+........+.-.++++|||||||++.... ..+...+..+. ..++++||||+ .+.+.+
T Consensus 125 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 125 VQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp SCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC-CGGGHH
T ss_pred CCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCC-CHHHHH
Confidence 467999999999876433333444568999999999986432 33444445553 45689999997 444443
No 77
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.37 E-value=0.0013 Score=86.28 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=93.3
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHh----------------------------------------
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT---------------------------------------- 279 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lr---------------------------------------- 279 (2442)
...|+.++.+-+....+.|+-|||+|......++|..+|.
T Consensus 425 ~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (997)
T 2ipc_A 425 EKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQ 504 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhcccc
Confidence 3468999888888888899999999999999998888888
Q ss_pred ------------------------------------hcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccccc
Q 000069 280 ------------------------------------FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 323 (2442)
Q Consensus 280 ------------------------------------krGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGE 323 (2442)
..|+++-.|..... +.-..+|.+ ++.. ..+-|+|..+|.
T Consensus 505 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~h-e~EAeIIAq--AG~~--GaVTIATNMAGR 579 (997)
T 2ipc_A 505 LKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHH-AREAEIVAQ--AGRS--KTVTIATNMAGR 579 (997)
T ss_dssp CSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSH-HHHHHHHHT--TTST--TCEEEECSSTTT
T ss_pred ccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccch-HHHHHHHHh--cCCC--CeEEEEecccCC
Confidence 56788888876543 223355553 3322 247889999999
Q ss_pred ccCCccc-------------------C-----------------------------------------------------
Q 000069 324 GVNLQAA-------------------D----------------------------------------------------- 331 (2442)
Q Consensus 324 GLNLQaA-------------------D----------------------------------------------------- 331 (2442)
|-++.-. +
T Consensus 580 GTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~G 659 (997)
T 2ipc_A 580 GTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALG 659 (997)
T ss_dssp TSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcC
Confidence 9987643 2
Q ss_pred --EEEEeCCCCCccccchhhccccccCCcccEEEE
Q 000069 332 --TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 364 (2442)
Q Consensus 332 --TVIIYDpPWNPardeQAIGRAHRIGQKKEVrVY 364 (2442)
+||--..+-|...+.|..||++|.|..-.-+.|
T Consensus 660 GLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~ 694 (997)
T 2ipc_A 660 GLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFY 694 (997)
T ss_dssp CCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEE
T ss_pred CeEEEeccCCchHHHHHHHhcccccCCCCCCeEEE
Confidence 788889999999999999999999997665443
No 78
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.36 E-value=8.7e-05 Score=79.53 Aligned_cols=68 Identities=9% Similarity=0.127 Sum_probs=45.2
Q ss_pred cCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCc-c--cHHHHHHHhcc-cccEEEEEeccCCC
Q 000069 20 HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA-S--CKLNADLKHYQ-SSHRLLLTGTPLQN 87 (2442)
Q Consensus 20 ~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~-~--SKLSKALKqLk-SrrRLLLTGTPLQN 87 (2442)
....+|+|+|++.+........+.-.+|++|||||||++... . ..+...++.+. ..++++|||||-.+
T Consensus 132 ~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 203 (220)
T 1t6n_A 132 KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE 203 (220)
T ss_dssp HSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTT
T ss_pred cCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHH
Confidence 346799999999987643333344457899999999998542 1 22223333333 46789999998443
No 79
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.33 E-value=0.00016 Score=79.52 Aligned_cols=68 Identities=19% Similarity=0.294 Sum_probs=46.4
Q ss_pred hhhcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCc--ccHHHHHHHhc--c---cccEEEEEecc
Q 000069 17 KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHY--Q---SSHRLLLTGTP 84 (2442)
Q Consensus 17 qIl~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~--~SKLSKALKqL--k---SrrRLLLTGTP 84 (2442)
..+....+|+|+|++.|........+.-.++++|||||||++... ...+...+..+ . ..++++||||+
T Consensus 145 ~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 145 REVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp HHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSC
T ss_pred HHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeC
Confidence 344567899999999997644333344456789999999998643 23344444432 2 34589999997
No 80
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.32 E-value=0.00013 Score=79.87 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=45.5
Q ss_pred cCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCC--cccHHHHHHHhcc-cccEEEEEecc
Q 000069 20 HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN--ASCKLNADLKHYQ-SSHRLLLTGTP 84 (2442)
Q Consensus 20 ~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN--~~SKLSKALKqLk-SrrRLLLTGTP 84 (2442)
...++|+|+||+.|.....+..+...++++|||||||++.. ....+...++.+. ..++++||||+
T Consensus 147 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~ 214 (237)
T 3bor_A 147 AEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM 214 (237)
T ss_dssp -CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred cCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEec
Confidence 34489999999988764333334445689999999999843 3344555555554 45679999997
No 81
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.30 E-value=0.00016 Score=78.78 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=44.9
Q ss_pred CCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCc---ccHHHHHHHhcc-cccEEEEEecc
Q 000069 21 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA---SCKLNADLKHYQ-SSHRLLLTGTP 84 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~---~SKLSKALKqLk-SrrRLLLTGTP 84 (2442)
.+.+|+|+|++.+........+...+|++|||||||++... ...+...+..+. ..++|+||||+
T Consensus 141 ~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 141 KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEecc
Confidence 46899999999997643333344457889999999998543 233344445554 45679999995
No 82
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.26 E-value=0.00022 Score=76.51 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=44.1
Q ss_pred CCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcc--cHHHHHHHhcc-cccEEEEEeccC
Q 000069 22 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ-SSHRLLLTGTPL 85 (2442)
Q Consensus 22 KFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~--SKLSKALKqLk-SrrRLLLTGTPL 85 (2442)
+.+|+|+|++.+........+...++++|||||||++.... ..+...+..+. ..++++||||+-
T Consensus 131 ~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 131 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCC
T ss_pred CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecC
Confidence 48999999999876433333444568999999999976432 23344444443 456799999973
No 83
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.23 E-value=0.00012 Score=77.06 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=24.5
Q ss_pred CCcEEEEchHHHhccCCcCc------ccCCCccEEEEcCCcccCC
Q 000069 22 KFNVLLTTYEYLMNKHDRPK------LSKIQWHYIIIDEGHRIKN 60 (2442)
Q Consensus 22 KFDVVITTYE~LrKe~DRs~------LsKIkWDLVIIDEAHRLKN 60 (2442)
+++|+|+||+.|.+...... +...+|++|||||||++..
T Consensus 132 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 132 SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 47899999999976332211 3335789999999999864
No 84
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.15 E-value=0.00021 Score=79.39 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=46.5
Q ss_pred hhhcCCCcEEEEchHHHhccCCc-CcccCCCccEEEEcCCcccCCcc--cHHHHHHHhcc-cccEEEEEeccC
Q 000069 17 KIVHQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ-SSHRLLLTGTPL 85 (2442)
Q Consensus 17 qIl~qKFDVVITTYE~LrKe~DR-s~LsKIkWDLVIIDEAHRLKN~~--SKLSKALKqLk-SrrRLLLTGTPL 85 (2442)
.....+++|+|+|++.|.+.... ..+.-.+|++|||||||++.+.. ..+...+..+. ..++++||||+-
T Consensus 156 ~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 156 LALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMT 228 (249)
T ss_dssp HHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCC
T ss_pred HHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCC
Confidence 33456789999999999763221 22334468999999999986532 23344444453 467799999973
No 85
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.09 E-value=0.00023 Score=77.19 Aligned_cols=64 Identities=22% Similarity=0.396 Sum_probs=45.0
Q ss_pred CCCcEEEEchHHHhccCCcC-cccCCCccEEEEcCCcccCCc--ccHHHHHHHhcc-cccEEEEEecc
Q 000069 21 QKFNVLLTTYEYLMNKHDRP-KLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQ-SSHRLLLTGTP 84 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs-~LsKIkWDLVIIDEAHRLKN~--~SKLSKALKqLk-SrrRLLLTGTP 84 (2442)
.+++|+|+||+.+....... .+...+|++|||||||++.+. ...+...+..+. ..++++||||+
T Consensus 145 ~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 145 NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQ 212 (236)
T ss_dssp TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSC
T ss_pred CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeC
Confidence 56899999999997632221 234457899999999998753 234444455554 45579999997
No 86
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.98 E-value=0.00043 Score=74.73 Aligned_cols=68 Identities=12% Similarity=0.202 Sum_probs=46.5
Q ss_pred hhhcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcc--cHHHHHHHhcc-cccEEEEEecc
Q 000069 17 KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ-SSHRLLLTGTP 84 (2442)
Q Consensus 17 qIl~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~--SKLSKALKqLk-SrrRLLLTGTP 84 (2442)
..+..+++|+|+|++.+........+.-.++++|||||||++.... ..+...+..+. ....++||||.
T Consensus 138 ~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 138 EDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp HHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred HHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeC
Confidence 3445668999999999976433333444568999999999976532 23444444554 45679999995
No 87
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.96 E-value=0.00057 Score=74.58 Aligned_cols=65 Identities=17% Similarity=0.288 Sum_probs=42.7
Q ss_pred cCCCcEEEEchHHHhccCCcC--cccCCCccEEEEcCCcccCCc-----ccHHHHHHHhc--ccccEEEEEecc
Q 000069 20 HQKFNVLLTTYEYLMNKHDRP--KLSKIQWHYIIIDEGHRIKNA-----SCKLNADLKHY--QSSHRLLLTGTP 84 (2442)
Q Consensus 20 ~qKFDVVITTYE~LrKe~DRs--~LsKIkWDLVIIDEAHRLKN~-----~SKLSKALKqL--kSrrRLLLTGTP 84 (2442)
..+++|+|+|++.+....... .+.-.++++|||||||++... ...+...+..+ ...++++||||.
T Consensus 147 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 147 SKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp CCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred cCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 456799999999997532221 233446899999999998542 22233333333 245679999997
No 88
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.90 E-value=0.0004 Score=76.14 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=45.6
Q ss_pred hhhcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcc--cHHHHHHHhc-ccccEEEEEecc
Q 000069 17 KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHY-QSSHRLLLTGTP 84 (2442)
Q Consensus 17 qIl~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~--SKLSKALKqL-kSrrRLLLTGTP 84 (2442)
..+....+|+|+|++.|........+.-.++++|||||||++-... ..+...+..+ ....+++||||.
T Consensus 147 ~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 147 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp HHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred HHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeec
Confidence 3444568999999999876433333444567899999999976532 2233333444 345679999995
No 89
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.65 E-value=0.00074 Score=75.57 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=44.5
Q ss_pred hhcCCCcEEEEchHHHhccCCcC-cccCCCccEEEEcCCcccCCc--ccHHHHHHHhcc-cccEEEEEeccC
Q 000069 18 IVHQKFNVLLTTYEYLMNKHDRP-KLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQ-SSHRLLLTGTPL 85 (2442)
Q Consensus 18 Il~qKFDVVITTYE~LrKe~DRs-~LsKIkWDLVIIDEAHRLKN~--~SKLSKALKqLk-SrrRLLLTGTPL 85 (2442)
.+...++|+|+|++.+....... .+.-.++++|||||||++-.. ...+...+..+. ..++|+||||+-
T Consensus 172 ~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 172 KLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp HHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCC
T ss_pred HhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCC
Confidence 33355899999999886532221 123345799999999997653 233344444453 456799999973
No 90
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=96.11 E-value=0.0081 Score=74.39 Aligned_cols=93 Identities=11% Similarity=0.203 Sum_probs=55.3
Q ss_pred HHHHHHhhhh-hcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccccc
Q 000069 245 EMLDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 323 (2442)
Q Consensus 245 EaLdrLL~KL-ratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGGE 323 (2442)
..+.+.|..+ ...+.++|||+.....++.+.+.|.. +. +.+.|.. ..|.+++++|..+. . ..|.+++....+
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~-il~~V~~~~~~E 442 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-Y-LVMLVMRAKESE 442 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-C-EEEEEC------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-e-EEEEEecCceec
Confidence 3344444443 34567999999999999999888865 33 3445543 47889999997632 2 223347899999
Q ss_pred ccCCcc----cCEEEEeCCCCCccc
Q 000069 324 GVNLQA----ADTVIIFDTDWNPQV 344 (2442)
Q Consensus 324 GLNLQa----ADTVIIYDpPWNPar 344 (2442)
|||+.. +..||++.+|+-+..
T Consensus 443 GiD~~~~~~~~~~Vii~~lPf~~~~ 467 (540)
T 2vl7_A 443 GVEFREKENLFESLVLAGLPYPNVS 467 (540)
T ss_dssp ---------CEEEEEEESCCCCCTT
T ss_pred ceecCCCcccccEEEEECCCCCCCC
Confidence 999996 899999999976553
No 91
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.88 E-value=0.006 Score=70.03 Aligned_cols=65 Identities=9% Similarity=0.145 Sum_probs=41.9
Q ss_pred cCCCcEEEEchHHHhccCCc-CcccCCCccEEEEcCCcccCCc--ccHHHHHH-Hhc-ccccEEEEEecc
Q 000069 20 HQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNA--SCKLNADL-KHY-QSSHRLLLTGTP 84 (2442)
Q Consensus 20 ~qKFDVVITTYE~LrKe~DR-s~LsKIkWDLVIIDEAHRLKN~--~SKLSKAL-KqL-kSrrRLLLTGTP 84 (2442)
....+|+|+|++.|.....+ ..+.-.++++|||||||+|-.. .......+ +.+ ....+++||||+
T Consensus 208 ~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~ 277 (300)
T 3fmo_B 208 KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 277 (300)
T ss_dssp CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccC
Confidence 34578999999998764322 2333346789999999997642 11222222 333 335679999997
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.86 E-value=0.012 Score=64.71 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=39.1
Q ss_pred CCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCccc-CCccc---HHHHHHHhcccccEEEEEeccC
Q 000069 21 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRI-KNASC---KLNADLKHYQSSHRLLLTGTPL 85 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRL-KN~~S---KLSKALKqLkSrrRLLLTGTPL 85 (2442)
.+.+|+|+|++.+.+.... .-.++++|||||||++ -+... .+...+..+...+.++||||+-
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~ 219 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATID 219 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSC
T ss_pred CCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 4578999999988764322 1245799999999984 22111 1112222334466899999963
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=93.31 E-value=0.13 Score=65.20 Aligned_cols=79 Identities=11% Similarity=0.204 Sum_probs=52.0
Q ss_pred cCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec--ccccccCCcc--cC
Q 000069 256 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR--AGGVGVNLQA--AD 331 (2442)
Q Consensus 256 atGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR--AGGEGLNLQa--AD 331 (2442)
..++++|||+.....++.+.++|+ .+.+. ..-+++..+|..++++|. .... +|+++. ...||||+.. +.
T Consensus 446 ~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~---vL~~v~~gsf~EGiD~~g~~l~ 518 (620)
T 4a15_A 446 KVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHG---TIFAVSGGRLSEGINFPGNELE 518 (620)
T ss_dssp HHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCC---EEEEETTSCC--------CCCC
T ss_pred hCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCc---EEEEEecCceeccccCCCCceE
Confidence 456779999999999998888886 23333 444555678999999997 3332 667764 7889999986 88
Q ss_pred EEEEeCCCCC
Q 000069 332 TVIIFDTDWN 341 (2442)
Q Consensus 332 TVIIYDpPWN 341 (2442)
.||+.-+||-
T Consensus 519 ~viI~~lPfp 528 (620)
T 4a15_A 519 MIILAGLPFP 528 (620)
T ss_dssp EEEESSCCCC
T ss_pred EEEEEcCCCC
Confidence 9999988864
No 94
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=87.47 E-value=0.23 Score=61.71 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=63.1
Q ss_pred HHHHHHhhhh-hcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeC-CCCHHHHHHHHHHHhcCCCCceEEEeee--cc
Q 000069 245 EMLDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDG-HTSGGDRGALIDKFNQQDSPFFIFLLSI--RA 320 (2442)
Q Consensus 245 EaLdrLL~KL-ratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDG-STS~dEReeIIDrFNapDS~i~VFLLST--RA 320 (2442)
..|.+.|..+ ...+.++|||+.....++.+.+. .++.+. +.+ +++ +..+++.|+.... .+|+++ ..
T Consensus 379 ~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~-~q~~~~~---~~~~~~~~~~~~~---~vl~~v~gg~ 448 (551)
T 3crv_A 379 KRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKY-VESEDSS---VEDLYSAISANNK---VLIGSVGKGK 448 (551)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEE-ECCSSCC---HHHHHHHTTSSSS---CEEEEESSCC
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEE-EcCCCCC---HHHHHHHHHhcCC---eEEEEEecce
Confidence 3444444433 34567899999888888887763 344333 333 233 5668888853322 366666 58
Q ss_pred cccccCCc-----ccCEEEEeCCCCCccccchhhccccc
Q 000069 321 GGVGVNLQ-----AADTVIIFDTDWNPQVDLQAQARAHR 354 (2442)
Q Consensus 321 GGEGLNLQ-----aADTVIIYDpPWNPardeQAIGRAHR 354 (2442)
..||||+. .+..||+.-+|+-+. +.....|...
T Consensus 449 ~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~ 486 (551)
T 3crv_A 449 LAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQR 486 (551)
T ss_dssp SCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHH
T ss_pred ecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHH
Confidence 89999999 388999999888555 4444444433
No 95
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=85.96 E-value=0.19 Score=62.40 Aligned_cols=39 Identities=33% Similarity=0.493 Sum_probs=28.0
Q ss_pred CCCcEEEEchHHHhccCCcCccc-------CCCccEEEEcCCcccC
Q 000069 21 QKFNVLLTTYEYLMNKHDRPKLS-------KIQWHYIIIDEGHRIK 59 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs~Ls-------KIkWDLVIIDEAHRLK 59 (2442)
...+|+|+||.+|.....+..+. .....+|||||||+|-
T Consensus 143 ~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 143 KDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp GGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 34699999999998643322222 2356799999999993
No 96
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=73.98 E-value=1 Score=57.34 Aligned_cols=40 Identities=25% Similarity=0.512 Sum_probs=26.9
Q ss_pred CCCcEEEEchHHHhccCCcCcc-c----CCCccEEEEcCCcccCC
Q 000069 21 QKFNVLLTTYEYLMNKHDRPKL-S----KIQWHYIIIDEGHRIKN 60 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs~L-s----KIkWDLVIIDEAHRLKN 60 (2442)
...||||++|.+|....-+..+ . ...-.+|||||||+|-+
T Consensus 174 ~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 174 PDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPD 218 (620)
T ss_dssp GGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHH
T ss_pred hcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHH
Confidence 4579999999998763222111 1 12345999999999854
No 97
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=66.34 E-value=16 Score=45.61 Aligned_cols=40 Identities=28% Similarity=0.454 Sum_probs=29.1
Q ss_pred CCCcEEEEchHHHhccCCcCccc-CCCccEEEEcCCcccCC
Q 000069 21 QKFNVLLTTYEYLMNKHDRPKLS-KIQWHYIIIDEGHRIKN 60 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs~Ls-KIkWDLVIIDEAHRLKN 60 (2442)
...+|+|+||.+|.....+..+. .....+|||||||+|-+
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 45799999999998742222221 23567899999999876
No 98
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=55.25 E-value=6.4 Score=42.53 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=24.2
Q ss_pred CccEEEEcCCcccCCcccHHHHHHHhc-ccccEEEEEec
Q 000069 46 QWHYIIIDEGHRIKNASCKLNADLKHY-QSSHRLLLTGT 83 (2442)
Q Consensus 46 kWDLVIIDEAHRLKN~~SKLSKALKqL-kSrrRLLLTGT 83 (2442)
.+++|||||+|++... ....++.+ .....+++||.
T Consensus 76 ~~dvviIDE~Q~~~~~---~~~~l~~l~~~~~~Vi~~Gl 111 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPS---LFEVVKDLLDRGIDVFCAGL 111 (184)
T ss_dssp TEEEEEECCGGGSCTT---HHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEECcccCCHH---HHHHHHHHHHCCCCEEEEee
Confidence 5899999999998422 33444433 33677888888
No 99
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=54.78 E-value=31 Score=45.53 Aligned_cols=99 Identities=11% Similarity=-0.000 Sum_probs=68.4
Q ss_pred hhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHH----hhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEE
Q 000069 239 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL----TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 314 (2442)
Q Consensus 239 RsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~L----rkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VF 314 (2442)
.-+||-......+-.....+.++||.+.....+..+.+.| ...++++..++|+++..+|..+++.+..+.. .|+
T Consensus 398 TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~--~Iv 475 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQI--DVV 475 (780)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCC--CEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCC--CEE
Confidence 3567876555444444456789999998877666555444 4458999999999999999999998866543 444
Q ss_pred EeeecccccccCCcccCEEEEeCCC
Q 000069 315 LLSIRAGGVGVNLQAADTVIIFDTD 339 (2442)
Q Consensus 315 LLSTRAGGEGLNLQaADTVIIYDpP 339 (2442)
+.+.......+++...+.||+=+.+
T Consensus 476 VgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEEESCC
T ss_pred EECHHHHhhhhhccCCceEEecccc
Confidence 4443344456778888887774444
No 100
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=51.87 E-value=45 Score=39.18 Aligned_cols=98 Identities=12% Similarity=0.120 Sum_probs=66.6
Q ss_pred hhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhh---cCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEE
Q 000069 239 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 315 (2442)
Q Consensus 239 RsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrk---rGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFL 315 (2442)
.-+||-....-.+..+...+.++||.+.....+..+.+.|+. .++++..++|+.+..+|...++.+..++ ..|++
T Consensus 45 TGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~--~~Iiv 122 (414)
T 3oiy_A 45 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILV 122 (414)
T ss_dssp SSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC--CSEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCC--CCEEE
Confidence 346776644433333445678999999999998888888876 5889999999999988888888886543 34555
Q ss_pred eeeccccc---ccCCcccCEEEEeCC
Q 000069 316 LSIRAGGV---GVNLQAADTVIIFDT 338 (2442)
Q Consensus 316 LSTRAGGE---GLNLQaADTVIIYDp 338 (2442)
.+....-. -+++...+.||+=+.
T Consensus 123 ~Tp~~l~~~l~~~~~~~~~~iViDEa 148 (414)
T 3oiy_A 123 FSTQFVSKNREKLSQKRFDFVFVDDV 148 (414)
T ss_dssp EEHHHHHHCHHHHTTCCCSEEEESCH
T ss_pred ECHHHHHHHHHHhccccccEEEEeCh
Confidence 44433311 145566777666333
No 101
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=43.07 E-value=25 Score=32.46 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=8.6
Q ss_pred CCCCCccccchhhcccc
Q 000069 337 DTDWNPQVDLQAQARAH 353 (2442)
Q Consensus 337 DpPWNPardeQAIGRAH 353 (2442)
..|+++..+.+++.++.
T Consensus 100 ~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 100 SKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp SSCSTTHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 34555555555555443
No 102
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=36.08 E-value=94 Score=32.90 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=39.6
Q ss_pred CCcEEEEchHHHhccCCcCcccC-CCccEEEEcCCcccCCcc---cHHHHHHHhccc--ccEEEEEeccCC----CCHHH
Q 000069 22 KFNVLLTTYEYLMNKHDRPKLSK-IQWHYIIIDEGHRIKNAS---CKLNADLKHYQS--SHRLLLTGTPLQ----NNLEE 91 (2442)
Q Consensus 22 KFDVVITTYE~LrKe~DRs~LsK-IkWDLVIIDEAHRLKN~~---SKLSKALKqLkS--rrRLLLTGTPLQ----NNLeE 91 (2442)
.+.++..+...+..... ..+.. ....+|||||+|.+.... ..+...+..+.. ..++++|++-.. .....
T Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 80 ERRSFYIPLGIHASIST-ALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp TCCEEEEEGGGGGGSCG-GGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred CCeEEEEEHHHHHHHHH-HHHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 45666666655543211 11222 246899999999986532 334444444332 225888877433 22355
Q ss_pred HHHHH
Q 000069 92 LWALL 96 (2442)
Q Consensus 92 LwSLL 96 (2442)
++.-+
T Consensus 159 l~~r~ 163 (242)
T 3bos_A 159 LVSRM 163 (242)
T ss_dssp HHHHH
T ss_pred hhhHh
Confidence 55544
No 103
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=34.07 E-value=1.2e+02 Score=29.51 Aligned_cols=29 Identities=7% Similarity=0.119 Sum_probs=20.8
Q ss_pred CCeEEEEEchHHHHHHHHHHHhhcCceEE
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTFKQYRYL 286 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~LrkrGIkyl 286 (2442)
..+|||..........|...|...|+.+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~ 35 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHII 35 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEE
Confidence 45677777777777777777777776543
No 104
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=33.59 E-value=1e+02 Score=42.11 Aligned_cols=98 Identities=12% Similarity=0.096 Sum_probs=69.4
Q ss_pred hhccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhh---cCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEE
Q 000069 239 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 315 (2442)
Q Consensus 239 RsSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lrk---rGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFL 315 (2442)
.-+||-.+..-.+..+...+.++||.+..+..+..+.+.|.. .++++..++|+++..+|...++.+..++. .|++
T Consensus 102 TGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~--~IlV 179 (1104)
T 4ddu_A 102 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDY--HILV 179 (1104)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCC--SEEE
T ss_pred CCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCC--CEEE
Confidence 357787765555555556788999999999999999888877 57899999999998888888888876543 3444
Q ss_pred eeeccccc---ccCCcccCEEEEeCC
Q 000069 316 LSIRAGGV---GVNLQAADTVIIFDT 338 (2442)
Q Consensus 316 LSTRAGGE---GLNLQaADTVIIYDp 338 (2442)
.+...+-. -+++...+.||+=+.
T Consensus 180 ~Tp~rL~~~l~~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 180 FSTQFVSKNREKLSQKRFDFVFVDDV 205 (1104)
T ss_dssp EEHHHHHHSHHHHHTSCCSEEEESCH
T ss_pred ECHHHHHHHHHhhcccCcCEEEEeCC
Confidence 44333211 144566777776443
No 105
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=33.41 E-value=1.1e+02 Score=42.09 Aligned_cols=94 Identities=14% Similarity=0.080 Sum_probs=66.6
Q ss_pred hccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHh----hcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEE
Q 000069 240 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 315 (2442)
Q Consensus 240 sSGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~Lr----krGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFL 315 (2442)
-+||-......+-.+...+.++||.+..+..+..+.+.|. ..++++..++|..+..++...++.+..+. +.|++
T Consensus 634 GsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~--~dIvV 711 (1151)
T 2eyq_A 634 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK--IDILI 711 (1151)
T ss_dssp CTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC--CSEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEE
Confidence 4567766554444445567899999998877766665554 34688999999999999999998886554 44555
Q ss_pred eeecccccccCCcccCEEEE
Q 000069 316 LSIRAGGVGVNLQAADTVII 335 (2442)
Q Consensus 316 LSTRAGGEGLNLQaADTVII 335 (2442)
.+.......+++...+.||+
T Consensus 712 ~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 712 GTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp ECTHHHHSCCCCSSEEEEEE
T ss_pred ECHHHHhCCccccccceEEE
Confidence 55555666677777766665
No 106
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=33.09 E-value=90 Score=29.83 Aligned_cols=96 Identities=17% Similarity=0.057 Sum_probs=53.2
Q ss_pred CCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeecccc-----ccc-CCcccC
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG-----VGV-NLQAAD 331 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAGG-----EGL-NLQaAD 331 (2442)
+..+..+......+. .+... +..+.++-.++...-..++++++.......+++++..... .-+ ....+.
T Consensus 27 ~~~v~~~~~~~~~~~----~~~~~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g 101 (135)
T 3eqz_A 27 FGNVEAFQHPRAFLT----LSLNK-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLN 101 (135)
T ss_dssp CSCEEEESCHHHHTT----SCCCT-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred cceeeeecCHHHHHH----hhccC-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCC
Confidence 445555544433322 22333 6777778777766666677777655556677777644321 111 112233
Q ss_pred EEEEeCCCCCccccchhhccccccCCc
Q 000069 332 TVIIFDTDWNPQVDLQAQARAHRIGQK 358 (2442)
Q Consensus 332 TVIIYDpPWNPardeQAIGRAHRIGQK 358 (2442)
..-++.-|+++..+.+++.|+.+.++.
T Consensus 102 ~~~~l~KP~~~~~l~~~l~~~~~~~~~ 128 (135)
T 3eqz_A 102 VINTFTKPINTEVLTCFLTSLSNRQAE 128 (135)
T ss_dssp EEEEEESSCCHHHHHHHHHHHSCCC--
T ss_pred cceeeCCCCCHHHHHHHHHHHHhhccc
Confidence 334455678888888888887665543
No 107
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=32.34 E-value=98 Score=29.69 Aligned_cols=92 Identities=14% Similarity=-0.003 Sum_probs=42.9
Q ss_pred CCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcC--CCCceEEEeeecccccccCCcc--cCE
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ--DSPFFIFLLSIRAGGVGVNLQA--ADT 332 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNap--DS~i~VFLLSTRAGGEGLNLQa--ADT 332 (2442)
.+..+..+......+..+ ....+..+.++-.+....-..++++++.. ...+.+++++...-..-..... ++.
T Consensus 26 ~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~ 101 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDA 101 (133)
T ss_dssp TTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSE
T ss_pred CCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCce
Confidence 455566555555444443 33456666676655544444455555432 2245566665432211111111 222
Q ss_pred EEEeCCCCCccccchhhccccc
Q 000069 333 VIIFDTDWNPQVDLQAQARAHR 354 (2442)
Q Consensus 333 VIIYDpPWNPardeQAIGRAHR 354 (2442)
++--|+++..+.+++.++.+
T Consensus 102 --~l~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 102 --YLVKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp --EEESSCCHHHHHHHHHHHHH
T ss_pred --EEeccCCHHHHHHHHHHHHh
Confidence 23346666666666665543
No 108
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=32.10 E-value=1.8e+02 Score=31.39 Aligned_cols=81 Identities=11% Similarity=0.098 Sum_probs=53.5
Q ss_pred ccHHHHHHHHhhhhhcCCCeEEEEEchHHHHHHHHHHH-hhcC---ceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEe
Q 000069 241 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL-TFKQ---YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 316 (2442)
Q Consensus 241 SGKLEaLdrLL~KLratGhKVLIFSQFtdTLDILED~L-rkrG---IkylRLDGSTS~dEReeIIDrFNapDS~i~VFLL 316 (2442)
..++.+..+|+.+....|+||+|+|.....++.|-+.| .... +.... .|... ....+ |+|
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~-~~~~~------------~~~~P---V~L 85 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNL-AGEGP------------RGGAP---VEI 85 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEE-TTCSS------------TTCCS---EEE
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCcc-CCCCC------------CCCCC---EEE
Confidence 34778889999999999999999999999999999988 2222 23332 23221 11222 555
Q ss_pred eecccccccCCcccCEEEEeCCCC
Q 000069 317 SIRAGGVGVNLQAADTVIIFDTDW 340 (2442)
Q Consensus 317 STRAGGEGLNLQaADTVIIYDpPW 340 (2442)
++... .+-...+.+|+++..+
T Consensus 86 ~~~~~---~~~~~~~vLinL~~~~ 106 (150)
T 3sxu_A 86 AWPQK---RSSSRRDILISLRTSF 106 (150)
T ss_dssp ECTTS---CCCSCCSEEEECCSSC
T ss_pred eCCCC---CCCCcCCEEEECCCCC
Confidence 53221 1224578999999876
No 109
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=30.82 E-value=41 Score=42.78 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=40.3
Q ss_pred CCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCC
Q 000069 21 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQ 86 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQ 86 (2442)
...+|+++|...+.. ..+....|++||||||..+.... ..+..+....+++|-|=|.|
T Consensus 318 ~~~~vI~~T~~~~~~----~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 375 (624)
T 2gk6_A 318 MNADVICCTCVGAGD----PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 375 (624)
T ss_dssp HTCSEEEEETGGGGC----GGGTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred hcCCEEEEcChhhcc----hhhhcCCCCEEEEecccccCcHH----HHHHHHhcCCeEEEecChhc
Confidence 467899999876643 24667789999999997765432 11222234578999999877
No 110
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=30.20 E-value=50 Score=31.60 Aligned_cols=93 Identities=11% Similarity=-0.034 Sum_probs=43.7
Q ss_pred CCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcC--CCCceEEEeeecccccccCCc--ccCEE
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ--DSPFFIFLLSIRAGGVGVNLQ--AADTV 333 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNap--DS~i~VFLLSTRAGGEGLNLQ--aADTV 333 (2442)
|..+..|......++.+ ....+..+.++-.+....-..++++++.. ...+.+++++...-..-.... .++.
T Consensus 27 g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~- 101 (127)
T 3i42_A 27 GFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF- 101 (127)
T ss_dssp TEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE-
T ss_pred CCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH-
Confidence 44555555544444443 33446666666555444444455555433 344555555543322111111 1333
Q ss_pred EEeCCCCCccccchhhccccccC
Q 000069 334 IIFDTDWNPQVDLQAQARAHRIG 356 (2442)
Q Consensus 334 IIYDpPWNPardeQAIGRAHRIG 356 (2442)
++--|+++..+.+++.+.++-+
T Consensus 102 -~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 102 -YLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp -EEESSCCHHHHHHHHHHHC---
T ss_pred -heeCCCCHHHHHHHHHHhhccC
Confidence 3445666777777766665543
No 111
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=29.87 E-value=1.4e+02 Score=34.41 Aligned_cols=91 Identities=11% Similarity=0.100 Sum_probs=57.7
Q ss_pred hccHHHHHHHHhhhh-hcCCCeEEEEEchHHHHHHHHHHHhhc-Cc---eEEEEeCCCCHHHHHHHHHHHhcCCCCceEE
Q 000069 240 LCGKLEMLDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTFK-QY---RYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 314 (2442)
Q Consensus 240 sSGKLEaLdrLL~KL-ratGhKVLIFSQFtdTLDILED~Lrkr-GI---kylRLDGSTS~dEReeIIDrFNapDS~i~VF 314 (2442)
-+||-.....++..+ ...+.++||.+.....+..+.+.|... ++ .+..++|+....++...... ..|+
T Consensus 33 G~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-------~~iv 105 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-------AKVI 105 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH-------CSEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC-------CCEE
Confidence 356665544444332 246789999999988887776666543 55 89999999987776554432 2355
Q ss_pred Eeeeccccc-----ccCCcccCEEEEeC
Q 000069 315 LLSIRAGGV-----GVNLQAADTVIIFD 337 (2442)
Q Consensus 315 LLSTRAGGE-----GLNLQaADTVIIYD 337 (2442)
+++...+.. .+++...+.||+=+
T Consensus 106 v~T~~~l~~~~~~~~~~~~~~~~vIiDE 133 (494)
T 1wp9_A 106 VATPQTIENDLLAGRISLEDVSLIVFDE 133 (494)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEEET
T ss_pred EecHHHHHHHHhcCCcchhhceEEEEEC
Confidence 555443322 34566777777633
No 112
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=29.75 E-value=35 Score=43.44 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=0.0
Q ss_pred CcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCC
Q 000069 23 FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQ 86 (2442)
Q Consensus 23 FDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQ 86 (2442)
.+|+++|............+....|++|||||| .+......+.-+....+++|-|=|.|
T Consensus 343 ~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEA-----sQ~~e~~~lipL~~~~~~ILVGD~~Q 401 (646)
T 4b3f_X 343 ANVVLATNTGASADGPLKLLPESYFDVVVIDEC-----AQALEASCWIPLLKARKCILAGDHKQ 401 (646)
T ss_dssp CSEEEEETTTTCSSSGGGGSCTTCCSEEEETTG-----GGSCHHHHTTTGGGSSEEEEEECTTS
T ss_pred cceeeeehhhhhhhhHHHhhhhccCCEEEEcCc-----cccchHHHHhhccccceEEEcCCccc
No 113
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=28.07 E-value=1.2e+02 Score=28.37 Aligned_cols=15 Identities=7% Similarity=-0.042 Sum_probs=7.4
Q ss_pred CCCCccccchhhccc
Q 000069 338 TDWNPQVDLQAQARA 352 (2442)
Q Consensus 338 pPWNPardeQAIGRA 352 (2442)
-|+++..+.+++.++
T Consensus 100 Kp~~~~~l~~~i~~~ 114 (116)
T 3a10_A 100 KSFNFDELKEKVKKL 114 (116)
T ss_dssp CCSSTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 345555555555443
No 114
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=28.03 E-value=36 Score=43.17 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCCC
Q 000069 45 IQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQN 87 (2442)
Q Consensus 45 IkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQN 87 (2442)
..+++|||||+|.+-.. .+...+..+....+|+|.|-|.|.
T Consensus 278 ~~~dvlIIDEasml~~~--~~~~Ll~~~~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 278 APYDLLIVDEVSMMGDA--LMLSLLAAVPPGARVLLVGDTDQL 318 (574)
T ss_dssp CSCSEEEECCGGGCCHH--HHHHHHTTSCTTCEEEEEECTTSC
T ss_pred ccCCEEEEcCccCCCHH--HHHHHHHhCcCCCEEEEEeccccc
Confidence 46899999999998532 344555566677899999999873
No 115
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=27.02 E-value=2.5e+02 Score=29.92 Aligned_cols=91 Identities=15% Similarity=0.060 Sum_probs=53.6
Q ss_pred hccHHHHH-HHHhhhhhc--CCCeEEEEEchHHHHHHHHHHHhhc-----CceEEEEeCCCCHHHHHHHHHHHhcCCCCc
Q 000069 240 LCGKLEML-DRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYLTFK-----QYRYLRLDGHTSGGDRGALIDKFNQQDSPF 311 (2442)
Q Consensus 240 sSGKLEaL-drLL~KLra--tGhKVLIFSQFtdTLDILED~Lrkr-----GIkylRLDGSTS~dEReeIIDrFNapDS~i 311 (2442)
-+||-... .-++..+.. .+.++||.+.....+..+.+.++.. ++++..+.|+.....+...+.. .. .
T Consensus 61 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~---~~--~ 135 (220)
T 1t6n_A 61 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NC--P 135 (220)
T ss_dssp TSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH---SC--C
T ss_pred CCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc---CC--C
Confidence 45675433 333333322 2348999999988887777766543 7899999999887665554432 22 2
Q ss_pred eEEEeeeccc-----ccccCCcccCEEEE
Q 000069 312 FIFLLSIRAG-----GVGVNLQAADTVII 335 (2442)
Q Consensus 312 ~VFLLSTRAG-----GEGLNLQaADTVII 335 (2442)
.|++.+.... ...+++...+.||+
T Consensus 136 ~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 136 HIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 3444443222 12355666666665
No 116
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=26.25 E-value=60 Score=31.12 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=19.9
Q ss_pred CCeEEEEEchHHHHHHHHHHHhhcCceEE
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTFKQYRYL 286 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~LrkrGIkyl 286 (2442)
+.||||..........|..+|...|+.+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~ 34 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVE 34 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEE
Confidence 45677777777777777777777666554
No 117
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=26.20 E-value=64 Score=39.38 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=37.2
Q ss_pred cccCCCccEEEEcCCcccCCcccHHHHHHHh-cc--cccEEEEEeccCCCCHHHHHHHHhhh
Q 000069 41 KLSKIQWHYIIIDEGHRIKNASCKLNADLKH-YQ--SSHRLLLTGTPLQNNLEELWALLNFL 99 (2442)
Q Consensus 41 ~LsKIkWDLVIIDEAHRLKN~~SKLSKALKq-Lk--SrrRLLLTGTPLQNNLeELwSLLNFL 99 (2442)
.+...+.+++|+||+|.+++. ..++.++.. +. ...+++++.||-..+ -+|.+....
T Consensus 268 slrG~~~~~viiDE~a~~~~~-~el~~al~~~ls~~~~~kiiiiSTP~g~n--~fy~l~~~a 326 (385)
T 2o0j_A 268 AVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVISSGRRSKIIITTTPNGLN--HFYDIWTAA 326 (385)
T ss_dssp HHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHHHSTTCCEEEEEECCCSSS--HHHHHHHHH
T ss_pred CccCCCCCEEEechhhhcCCC-HHHHHHHHHHhhcCCCCcEEEEeCCCCch--hHHHHHHHH
Confidence 356677899999999999873 234444442 22 357899999996553 555555443
No 118
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=26.04 E-value=1.4e+02 Score=31.25 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=43.6
Q ss_pred eEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCC
Q 000069 260 RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 308 (2442)
Q Consensus 260 KVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapD 308 (2442)
-+++|+.....+..|...++..|++++.++.......|.+.++.|.+..
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqg 52 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQG 52 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcC
Confidence 3688999999999999999999999999999999999999999996543
No 119
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=24.39 E-value=73 Score=31.54 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhhhcCCCeEEEEEc-hHHHHHHHHHHHhhcCceEEEEeCCCC
Q 000069 243 KLEMLDRLLPKLKATDHRVLFFST-MTRLLDVMEDYLTFKQYRYLRLDGHTS 293 (2442)
Q Consensus 243 KLEaLdrLL~KLratGhKVLIFSQ-FtdTLDILED~LrkrGIkylRLDGSTS 293 (2442)
++..+...+..+...+++|||||. .-.........|+..|+++..++|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 74 KLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp GHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred cHHHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 344444445444332288999994 555566778888889999899999865
No 120
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=24.29 E-value=36 Score=37.68 Aligned_cols=38 Identities=13% Similarity=0.257 Sum_probs=22.5
Q ss_pred ccEEEEcCCcccCC---cccHHHHHHHhccc----ccEEEEEecc
Q 000069 47 WHYIIIDEGHRIKN---ASCKLNADLKHYQS----SHRLLLTGTP 84 (2442)
Q Consensus 47 WDLVIIDEAHRLKN---~~SKLSKALKqLkS----rrRLLLTGTP 84 (2442)
-.+|||||||++-+ ......+.+..+.. ...++|.+.|
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 56899999999832 22222234444422 2357888777
No 121
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=23.56 E-value=30 Score=39.46 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=28.9
Q ss_pred CccEEEEcCCcccC-C-cccHHHHHHHhcccccEEEEEeccCC
Q 000069 46 QWHYIIIDEGHRIK-N-ASCKLNADLKHYQSSHRLLLTGTPLQ 86 (2442)
Q Consensus 46 kWDLVIIDEAHRLK-N-~~SKLSKALKqLkSrrRLLLTGTPLQ 86 (2442)
.+.+|||||+|++. . ....+.+.+..+....++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 67899999999995 2 23344555555666778888877643
No 122
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=23.54 E-value=83 Score=31.04 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=35.3
Q ss_pred HHHHhhhhhcCCCeEEEEEchHHHHHHHHHHHhhcCceEEEEeCCCC
Q 000069 247 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 293 (2442)
Q Consensus 247 LdrLL~KLratGhKVLIFSQFtdTLDILED~LrkrGIkylRLDGSTS 293 (2442)
|.+.+..+ ..+++|+|||..-........+|+..|+++..++|++.
T Consensus 45 l~~~~~~l-~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKIL-ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGS-CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhC-CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 33444443 45678999998877778888999999999999999854
No 123
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=22.65 E-value=61 Score=35.67 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=30.1
Q ss_pred CccEEEEcCCcccCCcccHHHHHHHhc-ccccEEEEEec--cCC----CCHHHHHHHHhhh
Q 000069 46 QWHYIIIDEGHRIKNASCKLNADLKHY-QSSHRLLLTGT--PLQ----NNLEELWALLNFL 99 (2442)
Q Consensus 46 kWDLVIIDEAHRLKN~~SKLSKALKqL-kSrrRLLLTGT--PLQ----NNLeELwSLLNFL 99 (2442)
.|++|||||+|.|... ....++.+ .....++++|- -++ +...+|..+.+.+
T Consensus 81 ~~dvViIDEaqfl~~~---~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V 138 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDE---IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFV 138 (191)
T ss_dssp TCSEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEE
T ss_pred cCCEEEEECCCCCCHH---HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccE
Confidence 5899999999998532 23444443 23557888874 222 3444454444443
No 124
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=22.35 E-value=44 Score=39.08 Aligned_cols=38 Identities=13% Similarity=0.257 Sum_probs=24.3
Q ss_pred CccEEEEcCCcccCCcc-cHHHHHHHhcccccEEEEEec
Q 000069 46 QWHYIIIDEGHRIKNAS-CKLNADLKHYQSSHRLLLTGT 83 (2442)
Q Consensus 46 kWDLVIIDEAHRLKN~~-SKLSKALKqLkSrrRLLLTGT 83 (2442)
+|+++||||+|+|.... ..+.+.|.......+++|+.+
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~ 120 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR 120 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 58999999999996422 123344444455566666653
No 125
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=22.32 E-value=2.8e+02 Score=30.04 Aligned_cols=89 Identities=13% Similarity=0.003 Sum_probs=53.7
Q ss_pred hccHHHH-HHHHhhhhh--cCCCeEEEEEchHHHHHHHHHHHhhc-----CceEEEEeCCCCHHHHHHHHHHHhcCCCCc
Q 000069 240 LCGKLEM-LDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFK-----QYRYLRLDGHTSGGDRGALIDKFNQQDSPF 311 (2442)
Q Consensus 240 sSGKLEa-LdrLL~KLr--atGhKVLIFSQFtdTLDILED~Lrkr-----GIkylRLDGSTS~dEReeIIDrFNapDS~i 311 (2442)
-+||-.. +.-++..+. ..+.++||.+..+..+..+.+.++.. ++++..+.|+....++...+ + ..
T Consensus 71 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~----~~ 143 (230)
T 2oxc_A 71 GTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K----KC 143 (230)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T----SC
T ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c----CC
Confidence 4677644 444444433 23578999999988887777776543 68889999998866554433 1 23
Q ss_pred eEEEeeeccc-----ccccCCcccCEEEE
Q 000069 312 FIFLLSIRAG-----GVGVNLQAADTVII 335 (2442)
Q Consensus 312 ~VFLLSTRAG-----GEGLNLQaADTVII 335 (2442)
.|++.+.... ...+++...+.||+
T Consensus 144 ~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 144 HIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp SEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred CEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 4544443322 12345666665555
No 126
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=22.17 E-value=71 Score=42.24 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=40.5
Q ss_pred CCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCC
Q 000069 21 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQ 86 (2442)
Q Consensus 21 qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQ 86 (2442)
...+|+++|...+.. ..+....|++||||||..+.... ..+..+....+++|-|=|.|
T Consensus 494 ~~a~VI~~T~~~~~~----~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 551 (800)
T 2wjy_A 494 MNADVICCTCVGAGD----PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 551 (800)
T ss_dssp HHCSEEEEETGGGGC----TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred ccCCEEEEchhhhCC----hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEeccccc
Confidence 356899999877643 23567789999999997764332 22233344678999999877
No 127
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=21.62 E-value=68 Score=36.29 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=24.2
Q ss_pred CCccEEEEcCCcccCCcccHHHHHHHhc-ccccEEEEEec
Q 000069 45 IQWHYIIIDEGHRIKNASCKLNADLKHY-QSSHRLLLTGT 83 (2442)
Q Consensus 45 IkWDLVIIDEAHRLKN~~SKLSKALKqL-kSrrRLLLTGT 83 (2442)
.++++|||||+|.|... ....+..+ .....++|+|-
T Consensus 88 ~~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp TTCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECC
T ss_pred CCCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEec
Confidence 45899999999997643 33333332 23567899986
No 128
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=21.31 E-value=67 Score=40.64 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=31.9
Q ss_pred ccCCCccEEEEcCCcccCCcccHHHHHHHh-cc--cccEEEEEeccCCC
Q 000069 42 LSKIQWHYIIIDEGHRIKNASCKLNADLKH-YQ--SSHRLLLTGTPLQN 87 (2442)
Q Consensus 42 LsKIkWDLVIIDEAHRLKN~~SKLSKALKq-Lk--SrrRLLLTGTPLQN 87 (2442)
+...+.+++|+||+|.+++.. .++..+.. +. ...+++++.||-..
T Consensus 269 lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 269 VRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSGRRSKIIITTTPNGL 316 (592)
T ss_dssp HHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSSSCCEEEEEECCCTT
T ss_pred ccCCCcceEEEehhccCCchh-HHHHHHHHHhccCCCceEEEEeCCCCc
Confidence 455678999999999998742 45555543 22 34789999999654
No 129
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=21.09 E-value=2.1e+02 Score=27.77 Aligned_cols=90 Identities=9% Similarity=-0.007 Sum_probs=45.3
Q ss_pred CCeEEEEEchHHHHHHHHHHHhh-cCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEee-ecccccccCCcccCEEEE
Q 000069 258 DHRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS-IRAGGVGVNLQAADTVII 335 (2442)
Q Consensus 258 GhKVLIFSQFtdTLDILED~Lrk-rGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLS-TRAGGEGLNLQaADTVII 335 (2442)
|..+..+....+.+.. +.. ..+..+.++-.+....-.+++++++.....+.+++++ .... ... .... ..-+
T Consensus 39 g~~v~~~~~~~~al~~----l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~-~~~-~~~~-~~~~ 111 (138)
T 2b4a_A 39 GAEVTVHPSGSAFFQH----RSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHE-LIE-SSEH-NLSY 111 (138)
T ss_dssp TCEEEEESSHHHHHHT----GGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC---CCC-CSSS-CEEE
T ss_pred CCEEEEeCCHHHHHHH----HHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCC-HHH-HHHH-HHhe
Confidence 4555555444443333 333 4566777776655444455666665544456666665 3322 221 2211 2223
Q ss_pred eCCCCCccccchhhccccc
Q 000069 336 FDTDWNPQVDLQAQARAHR 354 (2442)
Q Consensus 336 YDpPWNPardeQAIGRAHR 354 (2442)
+--|+++..+.+++.++.+
T Consensus 112 l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 112 LQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp EESSCCHHHHHHHHHHTCC
T ss_pred eeCCCCHHHHHHHHHHHHH
Confidence 3446677777777766644
No 130
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=20.95 E-value=2.7e+02 Score=26.97 Aligned_cols=22 Identities=9% Similarity=0.181 Sum_probs=11.8
Q ss_pred eEEEEEchHHHHHHHHHHHhhc
Q 000069 260 RVLFFSTMTRLLDVMEDYLTFK 281 (2442)
Q Consensus 260 KVLIFSQFtdTLDILED~Lrkr 281 (2442)
||||..........|..+|...
T Consensus 5 ~iLivdd~~~~~~~l~~~l~~~ 26 (140)
T 3n53_A 5 KILIIDQQDFSRIELKNFLDSE 26 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHTTT
T ss_pred EEEEEeCCHHHHHHHHHHHHhc
Confidence 4555555555555555555443
No 131
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=20.69 E-value=3.4e+02 Score=31.02 Aligned_cols=92 Identities=15% Similarity=0.043 Sum_probs=56.4
Q ss_pred hccHHHHH-HHHhhhhhc--CCCeEEEEEchHHHHHHHHHHHhhc-----CceEEEEeCCCCHHHHHHHHHHHhcCCCCc
Q 000069 240 LCGKLEML-DRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYLTFK-----QYRYLRLDGHTSGGDRGALIDKFNQQDSPF 311 (2442)
Q Consensus 240 sSGKLEaL-drLL~KLra--tGhKVLIFSQFtdTLDILED~Lrkr-----GIkylRLDGSTS~dEReeIIDrFNapDS~i 311 (2442)
-+||-... .-++..+.. .+.++||.+.....+..+.+.+... ++++..+.|+.....+...+.. .. .
T Consensus 55 GsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~--~ 129 (391)
T 1xti_A 55 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NC--P 129 (391)
T ss_dssp CSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH---SC--C
T ss_pred CCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc---CC--C
Confidence 45665433 333333322 3568999999988888777766543 7899999999987666555543 22 3
Q ss_pred eEEEeeeccc-----ccccCCcccCEEEEe
Q 000069 312 FIFLLSIRAG-----GVGVNLQAADTVIIF 336 (2442)
Q Consensus 312 ~VFLLSTRAG-----GEGLNLQaADTVIIY 336 (2442)
.|++.+...+ ...+++...+.||+=
T Consensus 130 ~iiv~T~~~l~~~~~~~~~~~~~~~~vViD 159 (391)
T 1xti_A 130 HIVVGTPGRILALARNKSLNLKHIKHFILD 159 (391)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCSEEEEC
T ss_pred CEEEECHHHHHHHHHcCCccccccCEEEEe
Confidence 3544443333 223566777777763
No 132
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=20.62 E-value=4.2e+02 Score=28.91 Aligned_cols=73 Identities=10% Similarity=0.070 Sum_probs=45.8
Q ss_pred CCCeEEEEEchHHHHHHHHHHH----hhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeeccc----c-cccCC
Q 000069 257 TDHRVLFFSTMTRLLDVMEDYL----TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG----G-VGVNL 327 (2442)
Q Consensus 257 tGhKVLIFSQFtdTLDILED~L----rkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTRAG----G-EGLNL 327 (2442)
.+.++||.+..+..+..+.+.+ ...++++..+.|+.+...+...+.. .+.|++.+...+ . ..+++
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~I~v~Tp~~l~~~l~~~~~~~ 174 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER------GVEICIATPGRLIDFLECGKTNL 174 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH------CCSEEEECHHHHHHHHHHTSCCC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC------CCCEEEECHHHHHHHHHcCCCCc
Confidence 4668999998887766655544 4558999999999987766555432 133444443222 1 23466
Q ss_pred cccCEEEE
Q 000069 328 QAADTVII 335 (2442)
Q Consensus 328 QaADTVII 335 (2442)
...++||+
T Consensus 175 ~~~~~lVi 182 (242)
T 3fe2_A 175 RRTTYLVL 182 (242)
T ss_dssp TTCCEEEE
T ss_pred ccccEEEE
Confidence 67776665
No 133
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=20.21 E-value=2.4e+02 Score=27.97 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=40.3
Q ss_pred CCeEEEEEc------hHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEee
Q 000069 258 DHRVLFFST------MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 317 (2442)
Q Consensus 258 GhKVLIFSQ------FtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLS 317 (2442)
.++|+||+. +=.+......+|..+|+.|..++=......+..+.+... ...+.++++.
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g--~~tvP~ifi~ 80 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSN--WPTFPQLYIG 80 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT--CSSSCEEEET
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHC--CCCCCeEEEC
Confidence 568999997 467788889999999999888876555555666555442 2334455544
No 134
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.14 E-value=1.7e+02 Score=31.45 Aligned_cols=58 Identities=14% Similarity=-0.006 Sum_probs=43.3
Q ss_pred CCCeEEEEE----chHHHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeec
Q 000069 257 TDHRVLFFS----TMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 319 (2442)
Q Consensus 257 tGhKVLIFS----QFtdTLDILED~LrkrGIkylRLDGSTS~dEReeIIDrFNapDS~i~VFLLSTR 319 (2442)
...|||+++ .+.--+.++..+|+..||.+..+....+.++-.+.+.++ + ..++.+|..
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~---~--~diV~lS~~ 78 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQE---D--VDVIGVSIL 78 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHT---T--CSEEEEEES
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc---C--CCEEEEEee
Confidence 457899997 455668899999999999999888888888766666665 2 335666643
No 135
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=20.09 E-value=80 Score=41.76 Aligned_cols=63 Identities=17% Similarity=0.266 Sum_probs=0.0
Q ss_pred hhhhhcCCCcEEEEchHHHhccCCcCcccCCCccEEEEcCCcccCCcccHHHHHHHhcccccEEEEEeccCC
Q 000069 15 REKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQ 86 (2442)
Q Consensus 15 RKqIl~qKFDVVITTYE~LrKe~DRs~LsKIkWDLVIIDEAHRLKN~~SKLSKALKqLkSrrRLLLTGTPLQ 86 (2442)
.........+|+++|...+ ....|.. .|++||||||..+.... ..+..+....+++|-|=|.|
T Consensus 491 ~~~~~l~~a~VI~~T~~~~----~~~~L~~-~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 491 TEAEILNKADVVCCTCVGA----GDKRLDT-KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp HHHHHHHTCSEEEEETTGG----GCTTCCS-CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred HHHHHhccCCEEEechhhc----ChHHHhc-cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCccc
Done!