Query 000070
Match_columns 2441
No_of_seqs 320 out of 1469
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 16:32:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00121 MAEBL; Provisional 98.8 5.7E-08 1.2E-12 126.6 16.4 10 82-91 603-612 (2084)
2 PTZ00121 MAEBL; Provisional 98.8 1E-07 2.2E-12 124.4 17.7 9 318-326 832-840 (2084)
3 PF07001 BAT2_N: BAT2 N-termin 98.6 1.9E-07 4E-12 104.3 9.5 73 8-119 16-88 (189)
4 KOG1029 Endocytic adaptor prot 98.6 1.1E-06 2.4E-11 110.3 17.1 11 81-91 93-103 (1118)
5 KOG1029 Endocytic adaptor prot 98.5 2.9E-06 6.2E-11 106.9 17.0 15 871-885 725-739 (1118)
6 PTZ00266 NIMA-related protein 98.4 4.1E-06 8.8E-11 111.3 15.8 15 52-66 25-39 (1021)
7 PTZ00266 NIMA-related protein 98.2 1.5E-05 3.2E-10 106.2 15.3 11 850-861 691-701 (1021)
8 KOG0163 Myosin class VI heavy 98.2 4.6E-06 1E-10 104.7 9.9 49 844-895 1208-1256(1259)
9 KOG4364 Chromatin assembly fac 98.2 3.6E-05 7.8E-10 96.7 16.9 23 1271-1293 749-771 (811)
10 KOG0163 Myosin class VI heavy 97.9 0.00023 5E-09 90.2 18.0 13 71-83 262-274 (1259)
11 KOG4661 Hsp27-ERE-TATA-binding 97.8 0.00077 1.7E-08 83.7 19.1 46 786-831 781-829 (940)
12 COG3064 TolA Membrane protein 97.8 0.00035 7.6E-09 82.7 15.4 22 550-571 66-87 (387)
13 KOG2891 Surface glycoprotein [ 97.7 0.0012 2.5E-08 77.2 16.8 25 550-574 274-298 (445)
14 PRK09510 tolA cell envelope in 97.7 0.0023 5E-08 78.7 20.2 10 882-891 361-370 (387)
15 COG3064 TolA Membrane protein 97.6 0.002 4.3E-08 76.7 17.9 9 913-921 362-370 (387)
16 KOG2891 Surface glycoprotein [ 97.4 0.0065 1.4E-07 71.3 18.6 8 389-396 158-165 (445)
17 PF05262 Borrelia_P83: Borreli 97.4 0.0025 5.4E-08 80.3 15.9 10 454-463 93-102 (489)
18 KOG2072 Translation initiation 97.3 0.045 9.8E-07 71.6 25.9 13 762-774 897-909 (988)
19 KOG4661 Hsp27-ERE-TATA-binding 97.3 0.0014 3E-08 81.6 11.7 20 236-256 256-275 (940)
20 KOG1144 Translation initiation 97.2 0.0014 2.9E-08 84.3 10.5 12 1325-1336 938-949 (1064)
21 KOG1144 Translation initiation 97.1 0.0011 2.3E-08 85.1 8.5 10 1132-1141 730-739 (1064)
22 KOG0742 AAA+-type ATPase [Post 96.8 0.16 3.5E-06 63.2 22.5 7 537-543 70-76 (630)
23 KOG2412 Nuclear-export-signal 96.8 0.046 1E-06 69.2 18.1 24 828-851 423-446 (591)
24 PF12037 DUF3523: Domain of un 96.5 0.17 3.6E-06 60.7 19.6 10 534-543 23-32 (276)
25 KOG0742 AAA+-type ATPase [Post 95.9 0.27 5.8E-06 61.5 17.2 11 722-732 253-263 (630)
26 TIGR03319 YmdA_YtgF conserved 95.8 0.17 3.7E-06 65.0 16.3 6 780-785 249-254 (514)
27 KOG3054 Uncharacterized conser 95.8 0.059 1.3E-06 63.1 10.7 8 762-769 250-257 (299)
28 PRK12704 phosphodiesterase; Pr 95.6 0.25 5.5E-06 63.5 16.4 6 780-785 255-260 (520)
29 PRK00106 hypothetical protein; 95.4 0.3 6.4E-06 63.1 16.2 6 780-785 270-275 (535)
30 PF12037 DUF3523: Domain of un 95.4 0.67 1.4E-05 55.8 17.9 21 501-521 19-39 (276)
31 PF09726 Macoilin: Transmembra 94.0 1 2.2E-05 60.1 16.4 9 188-196 196-204 (697)
32 KOG3654 Uncharacterized CH dom 93.9 0.28 6E-06 61.9 10.3 20 201-220 115-134 (708)
33 PRK12705 hypothetical protein; 92.0 4.5 9.7E-05 52.6 17.3 12 548-559 22-33 (508)
34 KOG4817 Unnamed protein [Funct 91.4 3 6.4E-05 51.8 14.0 75 8-120 15-89 (468)
35 PF05914 RIB43A: RIB43A; Inte 90.8 12 0.00027 47.2 19.0 7 537-543 142-148 (379)
36 PRK00409 recombination and DNA 90.6 7 0.00015 53.1 17.7 7 281-287 226-232 (782)
37 TIGR01069 mutS2 MutS2 family p 90.4 6.8 0.00015 53.2 17.4 14 277-290 217-230 (771)
38 KOG1103 Predicted coiled-coil 89.7 1.6 3.5E-05 53.5 9.8 87 913-1011 399-491 (561)
39 KOG4722 Zn-finger protein [Gen 89.5 11 0.00023 47.8 16.4 17 189-205 82-98 (672)
40 KOG0579 Ste20-like serine/thre 89.1 14 0.0003 49.2 17.5 11 346-356 574-584 (1187)
41 KOG2689 Predicted ubiquitin re 88.1 3.8 8.3E-05 49.6 11.2 15 798-812 249-263 (290)
42 KOG2507 Ubiquitin regulatory p 88.0 1.1 2.3E-05 56.4 7.0 11 859-869 423-433 (506)
43 KOG0579 Ste20-like serine/thre 87.9 13 0.00028 49.3 16.3 13 182-194 472-484 (1187)
44 KOG0994 Extracellular matrix g 87.3 13 0.00028 51.6 16.2 64 162-232 1193-1261(1758)
45 COG2268 Uncharacterized protei 87.1 13 0.00029 48.8 16.0 7 528-534 207-213 (548)
46 PF12128 DUF3584: Protein of u 86.5 22 0.00047 50.7 18.9 9 1128-1136 1122-1130(1201)
47 COG4372 Uncharacterized protei 85.7 33 0.00072 43.6 17.4 12 549-560 81-92 (499)
48 PF06637 PV-1: PV-1 protein (P 85.3 17 0.00037 45.9 14.8 13 751-763 408-420 (442)
49 KOG0982 Centrosomal protein Nu 84.2 48 0.001 42.7 18.1 24 537-560 213-236 (502)
50 PF09731 Mitofilin: Mitochondr 84.2 45 0.00097 43.8 18.9 16 318-333 26-41 (582)
51 KOG0994 Extracellular matrix g 84.2 17 0.00036 50.7 15.0 6 54-59 647-652 (1758)
52 PTZ00491 major vault protein; 84.1 21 0.00046 48.9 16.1 20 497-516 583-602 (850)
53 KOG1265 Phospholipase C [Lipid 82.4 38 0.00082 46.6 17.0 41 318-365 752-794 (1189)
54 KOG1363 Predicted regulator of 82.2 7 0.00015 50.4 10.5 15 500-514 204-218 (460)
55 KOG3634 Troponin [Cytoskeleton 81.9 11 0.00023 46.9 11.3 21 743-763 289-309 (361)
56 KOG1103 Predicted coiled-coil 81.9 42 0.00091 42.0 16.0 18 997-1014 412-429 (561)
57 KOG3654 Uncharacterized CH dom 81.7 9.1 0.0002 49.2 10.9 17 75-91 17-33 (708)
58 PLN02316 synthase/transferase 81.1 16 0.00035 51.2 13.9 19 768-786 509-529 (1036)
59 KOG1265 Phospholipase C [Lipid 80.7 50 0.0011 45.6 17.2 19 341-359 740-758 (1189)
60 PRK13428 F0F1 ATP synthase sub 79.9 92 0.002 40.3 19.0 25 824-848 241-265 (445)
61 KOG2507 Ubiquitin regulatory p 79.8 3.4 7.3E-05 52.3 6.4 8 805-812 360-367 (506)
62 PF10147 CR6_interact: Growth 79.8 82 0.0018 37.8 17.0 15 529-543 63-78 (217)
63 PTZ00491 major vault protein; 79.7 14 0.00031 50.4 12.3 11 150-160 198-208 (850)
64 KOG0161 Myosin class II heavy 79.1 55 0.0012 48.8 18.3 9 185-193 302-310 (1930)
65 KOG0980 Actin-binding protein 78.8 1.8E+02 0.0039 40.7 21.4 14 838-851 608-621 (980)
66 PF05914 RIB43A: RIB43A; Inte 76.8 1.3E+02 0.0029 38.5 18.8 13 512-524 131-143 (379)
67 KOG4691 Uncharacterized conser 76.7 1.4E+02 0.0031 35.4 17.3 7 551-557 43-49 (227)
68 PF04094 DUF390: Protein of un 76.6 89 0.0019 42.6 17.6 18 740-757 686-703 (828)
69 PRK12472 hypothetical protein; 76.5 30 0.00065 45.1 13.2 10 469-478 122-131 (508)
70 PRK13454 F0F1 ATP synthase sub 76.2 1.2E+02 0.0026 34.9 16.7 12 531-542 16-27 (181)
71 KOG0933 Structural maintenance 76.1 1.1E+02 0.0023 43.2 18.5 55 504-563 632-688 (1174)
72 PF06098 Radial_spoke_3: Radia 76.0 31 0.00068 42.6 12.8 15 335-349 2-16 (291)
73 KOG0161 Myosin class II heavy 74.5 94 0.002 46.6 18.6 11 253-263 454-464 (1930)
74 PF10147 CR6_interact: Growth 74.5 1.7E+02 0.0036 35.4 17.5 6 473-478 64-69 (217)
75 PF03154 Atrophin-1: Atrophin- 73.8 3.6 7.8E-05 56.1 4.7 11 918-928 899-909 (982)
76 TIGR02680 conserved hypothetic 72.7 84 0.0018 45.7 17.6 6 349-354 33-38 (1353)
77 TIGR02680 conserved hypothetic 72.6 81 0.0017 45.9 17.4 7 1476-1482 1070-1076(1353)
78 PLN02316 synthase/transferase 72.6 45 0.00098 47.1 14.5 9 267-275 120-128 (1036)
79 PF10168 Nup88: Nuclear pore c 70.7 62 0.0014 44.2 14.8 11 81-91 83-93 (717)
80 TIGR02169 SMC_prok_A chromosom 70.2 1.7E+02 0.0037 40.9 19.1 6 780-785 574-579 (1164)
81 KOG2441 mRNA splicing factor/p 69.9 37 0.0008 43.2 11.5 47 732-785 397-444 (506)
82 KOG0288 WD40 repeat protein Ti 69.6 1.7E+02 0.0037 38.0 17.0 15 997-1011 383-397 (459)
83 PRK04863 mukB cell division pr 69.3 1.5E+02 0.0033 43.7 18.8 28 1091-1118 729-756 (1486)
84 KOG0982 Centrosomal protein Nu 67.8 1.7E+02 0.0036 38.2 16.4 10 538-547 204-213 (502)
85 PRK04863 mukB cell division pr 67.8 1.5E+02 0.0033 43.8 18.3 9 1868-1876 1365-1373(1486)
86 KOG0612 Rho-associated, coiled 67.0 83 0.0018 44.9 14.8 15 469-484 389-403 (1317)
87 KOG0980 Actin-binding protein 66.4 4.1E+02 0.009 37.5 20.4 9 525-533 311-319 (980)
88 KOG3756 Pinin (desmosome-assoc 66.2 3E+02 0.0065 34.9 17.7 13 376-388 53-65 (340)
89 KOG2893 Zn finger protein [Gen 65.8 1.4E+02 0.0031 36.2 14.5 82 2192-2294 187-271 (341)
90 KOG4673 Transcription factor T 65.7 2.4E+02 0.0052 38.7 17.6 14 1078-1091 893-906 (961)
91 PF05667 DUF812: Protein of un 65.6 2.2E+02 0.0047 38.6 17.9 9 187-195 47-55 (594)
92 KOG0996 Structural maintenance 64.8 1.4E+02 0.003 42.7 16.1 6 904-909 731-736 (1293)
93 KOG3915 Transcription regulato 63.2 33 0.00072 44.2 9.5 20 36-55 71-90 (641)
94 KOG0249 LAR-interacting protei 63.2 1E+02 0.0022 42.1 13.9 12 912-923 440-451 (916)
95 KOG4572 Predicted DNA-binding 63.1 1.4E+02 0.003 41.2 15.0 15 69-84 229-243 (1424)
96 KOG3859 Septins (P-loop GTPase 62.8 1.2E+02 0.0025 38.0 13.4 9 398-406 143-151 (406)
97 KOG0971 Microtubule-associated 62.5 2.5E+02 0.0054 39.6 17.3 33 308-352 46-79 (1243)
98 PF07227 DUF1423: Protein of u 62.3 1.3E+02 0.0027 39.5 14.3 13 338-350 154-166 (446)
99 PRK12472 hypothetical protein; 60.0 1.5E+02 0.0034 39.1 14.5 8 909-916 481-488 (508)
100 KOG0976 Rho/Rac1-interacting s 59.3 3.2E+02 0.007 38.1 17.3 24 1061-1084 812-837 (1265)
101 KOG4403 Cell surface glycoprot 59.0 2.9E+02 0.0064 36.1 16.3 11 531-541 202-212 (575)
102 KOG3598 Thyroid hormone recept 57.9 15 0.00033 51.9 5.8 12 376-387 1924-1935(2220)
103 COG1196 Smc Chromosome segrega 57.4 3.3E+02 0.0071 39.4 18.5 10 916-925 645-654 (1163)
104 KOG2129 Uncharacterized conser 55.6 6.1E+02 0.013 33.4 19.5 18 871-888 478-495 (552)
105 COG4499 Predicted membrane pro 55.4 27 0.00058 44.4 6.9 26 545-570 344-369 (434)
106 PF04747 DUF612: Protein of un 55.2 1.8E+02 0.0039 37.4 13.5 6 1109-1114 453-458 (510)
107 KOG0250 DNA repair protein RAD 54.6 4.8E+02 0.01 37.7 18.4 23 435-457 557-579 (1074)
108 KOG2441 mRNA splicing factor/p 54.3 52 0.0011 42.0 8.9 9 447-455 189-197 (506)
109 KOG0288 WD40 repeat protein Ti 53.6 4.9E+02 0.011 34.2 17.0 8 1004-1011 354-361 (459)
110 PF07227 DUF1423: Protein of u 51.4 1.7E+02 0.0037 38.4 12.9 6 479-484 262-267 (446)
111 PRK03918 chromosome segregatio 51.2 6.3E+02 0.014 35.0 19.1 7 349-355 32-38 (880)
112 PF06991 Prp19_bind: Splicing 50.3 1.6E+02 0.0036 36.4 12.2 6 550-555 41-46 (276)
113 KOG0345 ATP-dependent RNA heli 49.4 67 0.0015 42.1 9.1 7 310-316 171-177 (567)
114 KOG0612 Rho-associated, coiled 47.0 7.5E+02 0.016 36.4 18.5 17 1320-1336 1203-1219(1317)
115 KOG0996 Structural maintenance 45.1 6.8E+02 0.015 36.7 17.6 10 549-558 309-318 (1293)
116 KOG0249 LAR-interacting protei 43.6 7E+02 0.015 34.9 16.7 17 1460-1476 819-835 (916)
117 KOG0933 Structural maintenance 43.4 6.8E+02 0.015 36.1 17.0 6 780-785 1043-1048(1174)
118 PF15359 CDV3: Carnitine defic 42.2 61 0.0013 36.1 6.4 62 117-193 60-123 (129)
119 KOG0250 DNA repair protein RAD 41.5 8.1E+02 0.018 35.6 17.6 17 404-420 85-101 (1074)
120 KOG0976 Rho/Rac1-interacting s 38.6 9.5E+02 0.021 34.0 16.8 12 1506-1517 1198-1209(1265)
121 PF03154 Atrophin-1: Atrophin- 37.9 18 0.00038 50.0 1.9 28 1109-1137 853-880 (982)
122 PLN03188 kinesin-12 family pro 37.8 1.2E+03 0.026 34.7 18.4 20 407-426 671-690 (1320)
123 KOG2505 Ankyrin repeat protein 37.6 1.7E+02 0.0036 38.9 9.9 10 488-497 304-313 (591)
124 KOG0247 Kinesin-like protein [ 37.5 5.9E+02 0.013 35.6 15.0 8 352-359 326-333 (809)
125 KOG2751 Beclin-like protein [S 37.3 6.7E+02 0.015 33.2 14.9 23 827-849 373-397 (447)
126 KOG0577 Serine/threonine prote 36.6 6.1E+02 0.013 35.0 14.6 15 261-275 210-224 (948)
127 COG0419 SbcC ATPase involved i 36.3 1.5E+03 0.032 32.2 19.3 7 349-355 34-40 (908)
128 KOG0577 Serine/threonine prote 36.1 1.4E+03 0.03 31.9 20.1 18 1074-1091 815-832 (948)
129 KOG1425 Microfibrillar-associa 35.9 2.9E+02 0.0062 35.5 11.2 29 726-754 347-376 (430)
130 PF07111 HCR: Alpha helical co 35.6 1.5E+03 0.032 32.0 18.8 30 746-775 286-316 (739)
131 KOG0345 ATP-dependent RNA heli 34.6 1.5E+02 0.0033 39.1 9.0 14 374-387 350-363 (567)
132 KOG3878 Protein involved in ma 33.4 1.1E+02 0.0024 38.6 7.2 14 908-921 402-415 (469)
133 KOG3878 Protein involved in ma 33.1 8.2E+02 0.018 31.5 14.2 6 537-542 86-91 (469)
134 KOG2341 TATA box binding prote 31.8 1.6E+02 0.0035 39.5 8.8 7 85-91 10-16 (563)
135 KOG3973 Uncharacterized conser 31.6 77 0.0017 40.1 5.6 57 71-127 310-393 (465)
136 PF00901 Orbi_VP5: Orbivirus o 30.7 1.5E+03 0.032 30.7 16.5 16 538-553 77-92 (508)
137 PRK10929 putative mechanosensi 29.0 1.6E+03 0.035 33.1 17.9 18 1627-1644 1061-1078(1109)
138 KOG0971 Microtubule-associated 28.7 1.9E+03 0.041 31.9 17.4 7 1303-1309 1100-1106(1243)
139 PLN03188 kinesin-12 family pro 28.1 1.7E+03 0.036 33.4 17.4 12 70-81 65-76 (1320)
140 KOG3973 Uncharacterized conser 27.4 43 0.00093 42.1 2.6 20 36-55 441-460 (465)
141 KOG0804 Cytoplasmic Zn-finger 27.0 1.7E+03 0.037 30.0 17.3 10 376-385 235-244 (493)
142 KOG1924 RhoA GTPase effector D 26.7 1.7E+02 0.0037 40.4 7.8 38 2106-2144 574-613 (1102)
143 PRK10361 DNA recombination pro 26.6 1.7E+03 0.037 30.0 18.5 15 714-728 200-216 (475)
144 KOG0999 Microtubule-associated 26.0 1.9E+03 0.041 30.3 17.4 29 1083-1113 425-453 (772)
145 PRK05035 electron transport co 24.6 2.1E+02 0.0046 39.3 8.4 32 151-182 73-106 (695)
146 PTZ00332 paraflagellar rod pro 24.0 1.8E+03 0.038 30.2 15.4 9 548-556 191-199 (589)
147 KOG1832 HIV-1 Vpr-binding prot 23.8 51 0.0011 45.5 2.5 25 1101-1125 1426-1450(1516)
148 PF04615 Utp14: Utp14 protein; 23.3 9E+02 0.02 33.5 13.8 50 1099-1148 584-635 (735)
149 PF06658 DUF1168: Protein of u 23.2 5.6E+02 0.012 29.4 9.8 12 532-543 27-38 (142)
150 KOG0338 ATP-dependent RNA heli 23.1 5E+02 0.011 35.1 10.6 6 412-417 357-362 (691)
151 KOG0979 Structural maintenance 23.0 2.2E+03 0.048 31.5 16.9 17 185-201 347-363 (1072)
152 PRK10246 exonuclease subunit S 23.0 2.5E+03 0.055 30.7 18.7 7 349-355 39-45 (1047)
153 PLN02372 violaxanthin de-epoxi 22.8 9.5E+02 0.021 31.9 12.7 7 381-387 243-249 (455)
154 PF04615 Utp14: Utp14 protein; 22.1 6.7E+02 0.015 34.7 12.2 7 1219-1225 684-690 (735)
155 PF12004 DUF3498: Domain of un 21.9 30 0.00065 45.3 0.0 8 379-386 236-243 (495)
156 PF07415 Herpes_LMP2: Gammaher 20.8 34 0.00073 43.0 0.1 41 93-133 14-54 (489)
157 KOG0245 Kinesin-like protein [ 20.5 5.3E+02 0.012 37.2 10.6 17 45-61 93-109 (1221)
158 PRK13203 ureB urease subunit b 20.5 37 0.00081 36.6 0.3 14 2047-2060 37-50 (102)
159 PRK11281 hypothetical protein; 20.5 3E+03 0.065 30.6 18.2 151 549-699 39-214 (1113)
160 PF07767 Nop53: Nop53 (60S rib 20.4 5.1E+02 0.011 33.0 10.0 138 569-706 195-346 (387)
161 TIGR00606 rad50 rad50. This fa 20.1 3.1E+03 0.066 30.6 18.8 15 173-187 148-162 (1311)
No 1
>PTZ00121 MAEBL; Provisional
Probab=98.80 E-value=5.7e-08 Score=126.58 Aligned_cols=10 Identities=50% Similarity=0.610 Sum_probs=6.4
Q ss_pred cccccccccC
Q 000070 82 SLRKEHERFD 91 (2441)
Q Consensus 82 slrkehe~~d 91 (2441)
---+.-+|||
T Consensus 603 pq~~~m~rfd 612 (2084)
T PTZ00121 603 PQQKFMERFD 612 (2084)
T ss_pred cHHHHHHhcC
Confidence 3456677777
No 2
>PTZ00121 MAEBL; Provisional
Probab=98.79 E-value=1e-07 Score=124.43 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=5.2
Q ss_pred ccccCCCCC
Q 000070 318 AYWEGDFDM 326 (2441)
Q Consensus 318 ~~w~~~fd~ 326 (2441)
+.|+.+|+-
T Consensus 832 pC~e~~~~N 840 (2084)
T PTZ00121 832 PCLEGSFGN 840 (2084)
T ss_pred ccCCCCCCc
Confidence 556666653
No 3
>PF07001 BAT2_N: BAT2 N-terminus; InterPro: IPR009738 This entry represents the N terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin [].
Probab=98.57 E-value=1.9e-07 Score=104.32 Aligned_cols=73 Identities=33% Similarity=0.535 Sum_probs=50.5
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeeccCccccccCCccccCCCCCCCcccccc
Q 000070 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (2441)
Q Consensus 8 ~k~~svnln~~yg~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~gggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh 87 (2441)
.||.++|||..|--.+.-- + -....-..||.+|++= +.. --||||.||||||.||
T Consensus 16 ~Ky~~l~in~~YkGks~e~---------q---------k~~~~~~hGmqsLGKv------~~a-RRmPpPaNLPSLKaEn 70 (189)
T PF07001_consen 16 PKYSSLNINSLYKGKSLEP---------Q---------KSTVPRRHGMQSLGKV------PSA-RRMPPPANLPSLKAEN 70 (189)
T ss_pred ccceeechhhhhcCCcccc---------c---------cCCccCCCcceecccc------ccc-ccCCCCCCCcchhhhc
Confidence 3899999999993333210 1 1122236799999982 111 1289999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000070 88 ERFDSSGSNGGPAGGGVSGAGQRPGSSGTGWT 119 (2441)
Q Consensus 88 e~~ds~g~~~g~~~~~~~g~g~rp~ssg~gwt 119 (2441)
.++| |+...|+.. |.||+
T Consensus 71 ~GnD-------pnv~lVP~~-------GsGWa 88 (189)
T PF07001_consen 71 KGND-------PNVSLVPKG-------GSGWA 88 (189)
T ss_pred cCCC-------CCceeecCC-------CcCcc
Confidence 9999 776655543 46998
No 4
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=1.1e-06 Score=110.35 Aligned_cols=11 Identities=45% Similarity=0.492 Sum_probs=5.5
Q ss_pred CcccccccccC
Q 000070 81 PSLRKEHERFD 91 (2441)
Q Consensus 81 pslrkehe~~d 91 (2441)
|||-|---+|-
T Consensus 93 Psll~~~~~~~ 103 (1118)
T KOG1029|consen 93 PSLLKQPPRNA 103 (1118)
T ss_pred hHHhccCCcCC
Confidence 44555554444
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=2.9e-06 Score=106.87 Aligned_cols=15 Identities=33% Similarity=0.767 Sum_probs=10.1
Q ss_pred cCCcccccCCCCCCC
Q 000070 871 YGDVGWGQGRYRGNV 885 (2441)
Q Consensus 871 ~GD~gW~qS~srgrp 885 (2441)
-|..||+.+.-++.+
T Consensus 725 ~aEPGWlaGel~gkt 739 (1118)
T KOG1029|consen 725 AAEPGWLAGELRGKT 739 (1118)
T ss_pred cCCcccccceecccc
Confidence 366777777777663
No 6
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.36 E-value=4.1e-06 Score=111.26 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=8.9
Q ss_pred CCceEEeeccCcccc
Q 000070 52 GGGMLVLSRPRSSQK 66 (2441)
Q Consensus 52 gggm~vlsr~r~~~~ 66 (2441)
+=|.|.|.+.+.+..
T Consensus 25 gFGtVYLAkdk~tg~ 39 (1021)
T PTZ00266 25 RFGEVFLVKHKRTQE 39 (1021)
T ss_pred CCeEEEEEEECCCCe
Confidence 345677777665543
No 7
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.19 E-value=1.5e-05 Score=106.16 Aligned_cols=11 Identities=36% Similarity=0.755 Sum_probs=6.2
Q ss_pred CCCccCcccccc
Q 000070 850 GDHYGRNIEMES 861 (2441)
Q Consensus 850 gdt~gr~~e~ds 861 (2441)
+|+|.|+ +|+.
T Consensus 691 ~~~~~~~-~~~~ 701 (1021)
T PTZ00266 691 QDTFDRN-DMHG 701 (1021)
T ss_pred ccccchh-hhhH
Confidence 5666666 4443
No 8
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=98.19 E-value=4.6e-06 Score=104.69 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=37.7
Q ss_pred cccCCCCCCccCccccccccccccccccCCcccccCCCCCCCCCCCCCCCCC
Q 000070 844 WNMSGDGDHYGRNIEMESDFHENITERYGDVGWGQGRYRGNVHPPYPDRIYP 895 (2441)
Q Consensus 844 Wni~GDgdt~gr~~e~dsdf~en~~Er~GD~gW~qS~srgrp~PP~~~RmYq 895 (2441)
.+....+.+.+|.+||.++-||.+|||||...+.+ -+-..|.++..|.|
T Consensus 1208 L~LeeTgL~rKrGAEI~~~eFe~~W~r~Ggk~~~~---~~~a~p~~~~a~~q 1256 (1259)
T KOG0163|consen 1208 LSLEETGLTRKRGAEILEHEFEREWERNGGKAYKN---LGAAKPNGPAAAMQ 1256 (1259)
T ss_pred chhHhhccccccccccChHHHHHHHHHhCcHHhHh---hcccCCCchHHHHh
Confidence 34566778999999999999999999999988887 23355556655544
No 9
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.17 E-value=3.6e-05 Score=96.70 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=13.7
Q ss_pred CCCCcceEEeeccccCCCCCCCC
Q 000070 1271 SQAETPVKLQFGLFSGPSLIPSP 1293 (2441)
Q Consensus 1271 ~~~e~pv~lqFGlfsGpsLipsp 1293 (2441)
-++.++|+-|+-.--|++--|.+
T Consensus 749 q~~~lqv~~qw~y~l~~~~sp~~ 771 (811)
T KOG4364|consen 749 QDSRLQVKKQWLYKLGLSPSPDK 771 (811)
T ss_pred ccccccccceeeeeecCCCCCCC
Confidence 35667777777666555544433
No 10
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=97.95 E-value=0.00023 Score=90.25 Aligned_cols=13 Identities=38% Similarity=0.462 Sum_probs=6.3
Q ss_pred ccccCCCCCCCcc
Q 000070 71 KLSVPPPLNLPSL 83 (2441)
Q Consensus 71 klsvp~plnlpsl 83 (2441)
||++-+|-|.--|
T Consensus 262 kL~L~~pd~f~YL 274 (1259)
T KOG0163|consen 262 KLSLGKPDDFRYL 274 (1259)
T ss_pred HhccCCchhhhHH
Confidence 4555555444333
No 11
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.82 E-value=0.00077 Score=83.72 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=26.7
Q ss_pred ccccCCCCCCCCCCCCCCCCCCC-cCCCCCCC--cccccCCCCCcccch
Q 000070 786 QDAENGHYSPRRDSAFGGRAVPR-KEFYGGPG--IMSSRNYYKAGILEP 831 (2441)
Q Consensus 786 qd~eN~~~sPrrDs~fg~rsfpr-K~f~gG~G--fvsK~sY~ggG~tD~ 831 (2441)
.|+.-+.|-|..-.--|+-++.+ .++.+||| |+.|++..|.|+.-+
T Consensus 781 gd~regqHyp~~~~~hGGp~erHgrdsrdGwgGygsdKr~seGrGlppp 829 (940)
T KOG4661|consen 781 GDYREGQHYPLSGTVHGGPSERHGRDSRDGWGGYGSDKRNSEGRGLPPP 829 (940)
T ss_pred ccchhhcccCccCccCCCchhhccCccCCCcccccccccccCCCCCCCC
Confidence 56677755553322223333443 56677776 888988766655543
No 12
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=97.81 E-value=0.00035 Score=82.70 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=9.7
Q ss_pred HHhhhhhhhccccCCCcchhhH
Q 000070 550 VVKKKKDVLKQTDFHDPVRESF 571 (2441)
Q Consensus 550 lIKKKKEaaKq~E~EEK~REEe 571 (2441)
+++.+++..++.+.+++.+.+.
T Consensus 66 r~q~Q~~~akk~e~~r~kk~e~ 87 (387)
T COG3064 66 RIQSQQSSAKKGEQQRKKKEEQ 87 (387)
T ss_pred HHHHHHHHHhhhHHHHHhhhHH
Confidence 3444444444444444444433
No 13
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.68 E-value=0.0012 Score=77.22 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=14.4
Q ss_pred HHhhhhhhhccccCCCcchhhHHHH
Q 000070 550 VVKKKKDVLKQTDFHDPVRESFEAE 574 (2441)
Q Consensus 550 lIKKKKEaaKq~E~EEK~REEeEaE 574 (2441)
.|-|+.++.++++.++...++++..
T Consensus 274 qiakraeerrqieterlrqeeeeln 298 (445)
T KOG2891|consen 274 QIAKRAEERRQIETERLRQEEEELN 298 (445)
T ss_pred HHHHHHHHHhhhhHHHHhhhHhhhh
Confidence 3556666666666665555444433
No 14
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=97.68 E-value=0.0023 Score=78.75 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=4.8
Q ss_pred CCCCCCCCCC
Q 000070 882 RGNVHPPYPD 891 (2441)
Q Consensus 882 rgrp~PP~~~ 891 (2441)
+..++|++|.
T Consensus 361 r~a~lP~pP~ 370 (387)
T PRK09510 361 KTAKIPKPPS 370 (387)
T ss_pred HcCCCCCCCc
Confidence 3345555543
No 15
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=97.63 E-value=0.002 Score=76.68 Aligned_cols=9 Identities=22% Similarity=0.770 Sum_probs=3.4
Q ss_pred CCCCCCCCC
Q 000070 913 RHPRVLPPP 921 (2441)
Q Consensus 913 RqPRVlPPP 921 (2441)
|+-.||+||
T Consensus 362 k~~kiP~pp 370 (387)
T COG3064 362 KTAKIPKPP 370 (387)
T ss_pred HhccCCCCC
Confidence 333333333
No 16
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.44 E-value=0.0065 Score=71.30 Aligned_cols=8 Identities=13% Similarity=-0.093 Sum_probs=3.5
Q ss_pred ccCCCccc
Q 000070 389 QKDGFGAL 396 (2441)
Q Consensus 389 ~k~w~~aq 396 (2441)
+--||.-.
T Consensus 158 p~kwf~lk 165 (445)
T KOG2891|consen 158 PCKWFALK 165 (445)
T ss_pred cceeeeec
Confidence 33455433
No 17
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=97.41 E-value=0.0025 Score=80.35 Aligned_cols=10 Identities=0% Similarity=0.155 Sum_probs=4.4
Q ss_pred cccccccccc
Q 000070 454 VHSFNSQRAE 463 (2441)
Q Consensus 454 mSSwg~K~~E 463 (2441)
+..|++....
T Consensus 93 ~~aygY~~~~ 102 (489)
T PF05262_consen 93 EAAYGYSDED 102 (489)
T ss_pred HHhcCCChhh
Confidence 3444444444
No 18
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.045 Score=71.64 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=9.5
Q ss_pred CCCCCCCcccccc
Q 000070 762 DRGKPFNSWRRDA 774 (2441)
Q Consensus 762 dR~KPinSWrR~~ 774 (2441)
.|.-+.+.|+|..
T Consensus 897 ~~a~~~~~WrR~a 909 (988)
T KOG2072|consen 897 PRAPEEAEWRRGA 909 (988)
T ss_pred CCCCcchHHhhcc
Confidence 4555778899887
No 19
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.30 E-value=0.0014 Score=81.60 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=13.4
Q ss_pred CCcccccCCCcccCCccccCC
Q 000070 236 GMSPRLQSGQDVVGSRLRENG 256 (2441)
Q Consensus 236 ~mrpq~~~~~~~~g~~~~~~~ 256 (2441)
-..|-+.+-+.+.|.+ ++++
T Consensus 256 eeedlfdSahpeegDl-Dlas 275 (940)
T KOG4661|consen 256 EEEDLFDSAHPEEGDL-DLAS 275 (940)
T ss_pred hccccccccCCccccc-cccc
Confidence 3556677778888876 5544
No 20
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0014 Score=84.27 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=7.0
Q ss_pred CCCCCccccccC
Q 000070 1325 PNVPANFSLNQN 1336 (2441)
Q Consensus 1325 ~~~p~~~~~nqn 1336 (2441)
+.+.++|-||+-
T Consensus 938 L~ilpn~ifN~R 949 (1064)
T KOG1144|consen 938 LQILPNCIFNKR 949 (1064)
T ss_pred hhhhhHhhccCC
Confidence 445666666653
No 21
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0011 Score=85.14 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=4.0
Q ss_pred cceeeccccc
Q 000070 1132 SNLVLGFNEG 1141 (2441)
Q Consensus 1132 ~~~vlgf~eg 1141 (2441)
|-+|||=-.|
T Consensus 730 D~IvvcG~~G 739 (1064)
T KOG1144|consen 730 DQIVVCGLQG 739 (1064)
T ss_pred CEEEEcCCCC
Confidence 4444433333
No 22
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.16 Score=63.22 Aligned_cols=7 Identities=43% Similarity=0.757 Sum_probs=5.0
Q ss_pred CCCCCCc
Q 000070 537 FDGRDPF 543 (2441)
Q Consensus 537 ~~G~DP~ 543 (2441)
..|+||.
T Consensus 70 ~~gFDpe 76 (630)
T KOG0742|consen 70 WSGFDPE 76 (630)
T ss_pred ccCCChH
Confidence 4588886
No 23
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=96.77 E-value=0.046 Score=69.24 Aligned_cols=24 Identities=0% Similarity=-0.218 Sum_probs=17.4
Q ss_pred ccchhhhhhhhccCCccccCCCCC
Q 000070 828 ILEPHMDEFTVSRGQRWNMSGDGD 851 (2441)
Q Consensus 828 ~tD~~LeDYr~~~p~rWni~GDgd 851 (2441)
+-|..|+.+++.||=.=.|+.+.+
T Consensus 423 v~dlllA~l~KkCP~~VPf~~~~~ 446 (591)
T KOG2412|consen 423 VGDLLLARLHKKCPYVVPFHIVNS 446 (591)
T ss_pred HHHHHHHHHHhcCCccccccccCc
Confidence 344578888888887777776665
No 24
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=96.52 E-value=0.17 Score=60.72 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=6.1
Q ss_pred CCCCCCCCCc
Q 000070 534 SSSFDGRDPF 543 (2441)
Q Consensus 534 a~g~~G~DP~ 543 (2441)
.....||||.
T Consensus 23 ~~~~~~FDP~ 32 (276)
T PF12037_consen 23 RTTASGFDPE 32 (276)
T ss_pred CcccCCCCcH
Confidence 3345577776
No 25
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.27 Score=61.47 Aligned_cols=11 Identities=36% Similarity=0.534 Sum_probs=5.8
Q ss_pred hhhhhhhcccc
Q 000070 722 GERMVERITTS 732 (2441)
Q Consensus 722 sERmvDri~TS 732 (2441)
.+..++.|+|.
T Consensus 253 Rekwl~aInTt 263 (630)
T KOG0742|consen 253 REKWLEAINTT 263 (630)
T ss_pred HHHHHHHHhhh
Confidence 44555555554
No 26
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.83 E-value=0.17 Score=64.96 Aligned_cols=6 Identities=33% Similarity=0.130 Sum_probs=3.7
Q ss_pred cccccc
Q 000070 780 SSTFIT 785 (2441)
Q Consensus 780 SS~F~P 785 (2441)
.|+|.|
T Consensus 249 ls~fdp 254 (514)
T TIGR03319 249 LSGFDP 254 (514)
T ss_pred ecCCch
Confidence 566665
No 27
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.059 Score=63.08 Aligned_cols=8 Identities=50% Similarity=0.551 Sum_probs=4.9
Q ss_pred CCCCCCCc
Q 000070 762 DRGKPFNS 769 (2441)
Q Consensus 762 dR~KPinS 769 (2441)
||+|+|-.
T Consensus 250 DRGKfIYI 257 (299)
T KOG3054|consen 250 DRGKFIYI 257 (299)
T ss_pred CCCceEEe
Confidence 77666543
No 28
>PRK12704 phosphodiesterase; Provisional
Probab=95.58 E-value=0.25 Score=63.54 Aligned_cols=6 Identities=33% Similarity=0.130 Sum_probs=2.8
Q ss_pred cccccc
Q 000070 780 SSTFIT 785 (2441)
Q Consensus 780 SS~F~P 785 (2441)
.|+|.|
T Consensus 255 ls~~~~ 260 (520)
T PRK12704 255 LSGFDP 260 (520)
T ss_pred EecCCh
Confidence 444543
No 29
>PRK00106 hypothetical protein; Provisional
Probab=95.42 E-value=0.3 Score=63.14 Aligned_cols=6 Identities=33% Similarity=0.130 Sum_probs=3.7
Q ss_pred cccccc
Q 000070 780 SSTFIT 785 (2441)
Q Consensus 780 SS~F~P 785 (2441)
.|+|.|
T Consensus 270 lS~fdp 275 (535)
T PRK00106 270 LSGFDP 275 (535)
T ss_pred EeCCCh
Confidence 566665
No 30
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=95.41 E-value=0.67 Score=55.85 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCcccccCC
Q 000070 501 PHNDPMHNFSRDKRPLLKREE 521 (2441)
Q Consensus 501 L~NdpllNFGRDkRl~~K~mk 521 (2441)
..++....++|||-.+..--+
T Consensus 19 ~~~~~~~~~~FDP~aLERaAk 39 (276)
T PF12037_consen 19 NDNPRTTASGFDPEALERAAK 39 (276)
T ss_pred CCCCCcccCCCCcHHHHHHHH
Confidence 344455667888877775444
No 31
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.04 E-value=1 Score=60.10 Aligned_cols=9 Identities=56% Similarity=0.693 Sum_probs=5.0
Q ss_pred cccccccCC
Q 000070 188 SLQAALPAA 196 (2441)
Q Consensus 188 sl~a~lp~~ 196 (2441)
.|+-|||+.
T Consensus 196 ~l~~~lp~~ 204 (697)
T PF09726_consen 196 LLQQALPPE 204 (697)
T ss_pred HHHHhCCCc
Confidence 455566554
No 32
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=93.92 E-value=0.28 Score=61.88 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=13.3
Q ss_pred hhhcccchhHhhhccccccc
Q 000070 201 KKQKDGFSQKQKQGMSQELG 220 (2441)
Q Consensus 201 ~k~k~~~~qk~kq~~~~~~~ 220 (2441)
||.-+-|.-||+|.|+.--+
T Consensus 115 kkkmea~fakqrqklgksaf 134 (708)
T KOG3654|consen 115 KKKMEAIFAKQRQKLGKSAF 134 (708)
T ss_pred HHHHHHHHHHHHHHhchhhe
Confidence 34455666788888876655
No 33
>PRK12705 hypothetical protein; Provisional
Probab=91.98 E-value=4.5 Score=52.62 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=5.4
Q ss_pred hhHHhhhhhhhc
Q 000070 548 VGVVKKKKDVLK 559 (2441)
Q Consensus 548 lalIKKKKEaaK 559 (2441)
..++++++...+
T Consensus 22 ~~~~~~~~~~~~ 33 (508)
T PRK12705 22 VVLLKKRQRLAK 33 (508)
T ss_pred HHHHHHHHHHHH
Confidence 344455544433
No 34
>KOG4817 consensus Unnamed protein [Function unknown]
Probab=91.40 E-value=3 Score=51.84 Aligned_cols=75 Identities=36% Similarity=0.509 Sum_probs=47.1
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeeccCccccccCCccccCCCCCCCcccccc
Q 000070 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (2441)
Q Consensus 8 ~k~~svnln~~yg~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~gggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh 87 (2441)
.||--|-||..|--.- .-.+- ..-..-+-||-.|.+ + ..---.|||-||||||-|-
T Consensus 15 ~K~talsin~~ykg~~-----------~~~aq------R~~vp~RhGmQslGK------a-~v~rrmpPPAnLPSLkaEn 70 (468)
T KOG4817|consen 15 PKFTALSINRMYKGSR-----------EPSAQ------RNQVPRRHGMQSLGK------A-KVPRRMPPPANLPSLKAEN 70 (468)
T ss_pred cCcceeehhhhhcCCc-----------CCccc------ccCCCccchhhhhcc------c-cccccCCCCCCCcchhhcc
Confidence 5888888888884331 10000 112233678877764 1 2223579999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000070 88 ERFDSSGSNGGPAGGGVSGAGQRPGSSGTGWTK 120 (2441)
Q Consensus 88 e~~ds~g~~~g~~~~~~~g~g~rp~ssg~gwtk 120 (2441)
-+.| |..-.|+--| +||.+
T Consensus 71 ~g~d-------pn~~lVp~~G-------Tgw~~ 89 (468)
T KOG4817|consen 71 HGSD-------PNNLLVPVEG-------TGWGG 89 (468)
T ss_pred cCCC-------CCceeeecCC-------ccccc
Confidence 9999 7655444333 47764
No 35
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=90.84 E-value=12 Score=47.18 Aligned_cols=7 Identities=57% Similarity=0.857 Sum_probs=4.5
Q ss_pred CCCCCCc
Q 000070 537 FDGRDPF 543 (2441)
Q Consensus 537 ~~G~DP~ 543 (2441)
|+|-|..
T Consensus 142 F~GEDl~ 148 (379)
T PF05914_consen 142 FDGEDLN 148 (379)
T ss_pred cccccCC
Confidence 5666766
No 36
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=90.55 E-value=7 Score=53.12 Aligned_cols=7 Identities=43% Similarity=0.762 Sum_probs=2.6
Q ss_pred CCCeeec
Q 000070 281 PLPLVRL 287 (2441)
Q Consensus 281 plplvrl 287 (2441)
|..+|-|
T Consensus 226 p~~~~~l 232 (782)
T PRK00409 226 PQSVVEL 232 (782)
T ss_pred cHHHHHH
Confidence 3333333
No 37
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=90.41 E-value=6.8 Score=53.19 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=6.8
Q ss_pred cCCCCCCeeeccCC
Q 000070 277 YFPGPLPLVRLKPR 290 (2441)
Q Consensus 277 ~~~gplplvrl~~~ 290 (2441)
+|.-|..+|-||-+
T Consensus 217 ~~~ep~~~~~ln~~ 230 (771)
T TIGR01069 217 FYIEPQAIVKLNNK 230 (771)
T ss_pred EEEEcHHHHHHHHH
Confidence 44445555555433
No 38
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=89.70 E-value=1.6 Score=53.48 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=41.9
Q ss_pred CCCCCCCCCccccccCCCCCCCcCC---CCCCccccccccc---ccccccccccccccccccccccCCCcccccCCCCch
Q 000070 913 RHPRVLPPPTLTSMQKPSYRRENEC---PSPSTFQENEVEY---NRLLRSESISLAGLDRSEQHNLAQPEIIDVQPESTE 986 (2441)
Q Consensus 913 RqPRVlPPP~~~s~~r~s~~~~~~~---p~pstf~~~~~~~---~~~~r~e~~~~~~y~~~~~~~~~~~~~i~~~~~~a~ 986 (2441)
+-||-++||+.+.+-++ ..|++-. |+-|+....-+-- -.-.-.-+..-++|.++||+...|-- +|
T Consensus 399 gcP~~ie~~VpmPsPl~-S~GsslspS~~ASSSlt~~pcSSPV~~k~llGssaSSp~~qssyqvginqrf-------ha- 469 (561)
T KOG1103|consen 399 GCPRAIEPAVPMPSPLM-SIGSSLSPSLPASSSLTPRPCSSPVKKKPLLGSSASSPAVQSSYQVGINQRF-------HA- 469 (561)
T ss_pred CCCCCCCCCCCCCCccc-ccccccCCCCcccccCCCCCCCCccccccccccccCChhhhhhhhhcchhhh-------hh-
Confidence 56888888888887773 3443332 2222222111100 00000113345678888885444322 11
Q ss_pred hhhccccccccCccCCCcccccccC
Q 000070 987 NEEQNLERSTTSRCDSQSSLSVSSA 1011 (2441)
Q Consensus 987 ~E~q~~d~~~t~~~dsQsSLSvssp 1011 (2441)
--|++- ++.-.|-|+|.-.|+|
T Consensus 470 -aRhkf~--aqad~dqqasgl~sp~ 491 (561)
T KOG1103|consen 470 -ARHKFA--AQADMDQQASGLNSPA 491 (561)
T ss_pred -ccchhh--hcccCcccccccCCCc
Confidence 123333 4566677777666554
No 39
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=89.47 E-value=11 Score=47.76 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=10.5
Q ss_pred ccccccCCCCchhhhcc
Q 000070 189 LQAALPAASGSEKKQKD 205 (2441)
Q Consensus 189 l~a~lp~~~~~~~k~k~ 205 (2441)
|||..|+--+++.|-|+
T Consensus 82 lqagtpplqVnEEk~~a 98 (672)
T KOG4722|consen 82 LQAGTPPLQVNEEKEKA 98 (672)
T ss_pred HhcCCCCCCCchhhccc
Confidence 56666666666655544
No 40
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.07 E-value=14 Score=49.18 Aligned_cols=11 Identities=9% Similarity=0.392 Sum_probs=6.2
Q ss_pred cCCcccccccc
Q 000070 346 QRDSETGKVSS 356 (2441)
Q Consensus 346 ~r~~e~~k~~~ 356 (2441)
+|.|+.|+|-.
T Consensus 574 ~~~~~~~~~k~ 584 (1187)
T KOG0579|consen 574 ERANAVSNIKT 584 (1187)
T ss_pred hhhhhhhhhhh
Confidence 35666666543
No 41
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.08 E-value=3.8 Score=49.57 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCcCCC
Q 000070 798 DSAFGGRAVPRKEFY 812 (2441)
Q Consensus 798 Ds~fg~rsfprK~f~ 812 (2441)
|++-=|+.|||+.|.
T Consensus 249 ~P~~f~t~fPR~tf~ 263 (290)
T KOG2689|consen 249 DPYSFHTGFPRVTFT 263 (290)
T ss_pred CCeeeecCCCceecc
Confidence 555567888887765
No 42
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=88.01 E-value=1.1 Score=56.40 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=5.7
Q ss_pred ccccccccccc
Q 000070 859 MESDFHENITE 869 (2441)
Q Consensus 859 ~dsdf~en~~E 869 (2441)
+-+.|-.+|.+
T Consensus 423 ~~s~f~~~f~w 433 (506)
T KOG2507|consen 423 RVSSFANPFSW 433 (506)
T ss_pred HHHHHhccCCC
Confidence 44556666533
No 43
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.93 E-value=13 Score=49.33 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=8.1
Q ss_pred ccCCCcccccccc
Q 000070 182 RGEDFPSLQAALP 194 (2441)
Q Consensus 182 rgedfpsl~a~lp 194 (2441)
-|+-|-++|++.+
T Consensus 472 ~G~~~~s~qs~~s 484 (1187)
T KOG0579|consen 472 QGSTFFSPQSSAS 484 (1187)
T ss_pred cCccccCccccCC
Confidence 4666667776663
No 44
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.29 E-value=13 Score=51.64 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=36.2
Q ss_pred cCCCCCCccCCCccccccccccCCCccccccccCCCCchh--hhcccch---hHhhhcccccccccccCCCCCCCc
Q 000070 162 SGTVGPALSSFAPAEKASVLRGEDFPSLQAALPAASGSEK--KQKDGFS---QKQKQGMSQELGNNEQKDGCRFNA 232 (2441)
Q Consensus 162 ~~~~~~~~~~~~~~ek~~vlrgedfpsl~a~lp~~~~~~~--k~k~~~~---qk~kq~~~~~~~~~e~~~~~~~~~ 232 (2441)
+|.++|-...|..+|+-+ --+|+.|-+++++.. ++-...- .||-|.+-+.|..-|.+-.+-.++
T Consensus 1193 tGv~gay~s~f~~me~kl-------~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~ 1261 (1758)
T KOG0994|consen 1193 TGVLGAYASRFLDMEEKL-------EEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNS 1261 (1758)
T ss_pred ccCchhhHhHHHHHHHHH-------HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Confidence 566666555555554332 224566656666555 3322222 377788888888777665554443
No 45
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.14 E-value=13 Score=48.82 Aligned_cols=7 Identities=14% Similarity=0.786 Sum_probs=3.2
Q ss_pred cccccCC
Q 000070 528 FMKDFGS 534 (2441)
Q Consensus 528 f~~Dfga 534 (2441)
|+|..|.
T Consensus 207 yLda~G~ 213 (548)
T COG2268 207 YLDALGR 213 (548)
T ss_pred hhhhcCh
Confidence 4444444
No 46
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=86.54 E-value=22 Score=50.67 Aligned_cols=9 Identities=44% Similarity=0.527 Sum_probs=3.8
Q ss_pred CCcccceee
Q 000070 1128 PHMMSNLVL 1136 (2441)
Q Consensus 1128 p~~~~~~vl 1136 (2441)
.|.|+-|||
T Consensus 1122 S~G~syLi~ 1130 (1201)
T PF12128_consen 1122 SHGTSYLIL 1130 (1201)
T ss_pred CchHHHHHH
Confidence 344444443
No 47
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=85.65 E-value=33 Score=43.58 Aligned_cols=12 Identities=8% Similarity=0.075 Sum_probs=5.0
Q ss_pred hHHhhhhhhhcc
Q 000070 549 GVVKKKKDVLKQ 560 (2441)
Q Consensus 549 alIKKKKEaaKq 560 (2441)
..++.++++.+.
T Consensus 81 ~qlr~~rtel~~ 92 (499)
T COG4372 81 PQLRALRTELGT 92 (499)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 48
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=85.26 E-value=17 Score=45.87 Aligned_cols=13 Identities=8% Similarity=-0.041 Sum_probs=7.8
Q ss_pred ccCCCCCCcccCC
Q 000070 751 QFARDNSSGFLDR 763 (2441)
Q Consensus 751 ~tSr~~dSS~ldR 763 (2441)
+.+.+.|.++++.
T Consensus 408 pnp~pidp~~lee 420 (442)
T PF06637_consen 408 PNPPPIDPASLEE 420 (442)
T ss_pred CCCCCCChHHHHH
Confidence 4556667666654
No 49
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.24 E-value=48 Score=42.72 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=12.6
Q ss_pred CCCCCCcchhhhhHHhhhhhhhcc
Q 000070 537 FDGRDPFSAGLVGVVKKKKDVLKQ 560 (2441)
Q Consensus 537 ~~G~DP~~~sllalIKKKKEaaKq 560 (2441)
.++.+-.....+.++++|......
T Consensus 213 mee~r~di~~kv~flerkv~eled 236 (502)
T KOG0982|consen 213 MEEERIDIERKVRFLERKVQELED 236 (502)
T ss_pred hhchhhhHHHHHHHHHHHHHHhhc
Confidence 334444455555666666554444
No 50
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=84.21 E-value=45 Score=43.79 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=7.1
Q ss_pred ccccCCCCCCCCCCCC
Q 000070 318 AYWEGDFDMPRPSVLP 333 (2441)
Q Consensus 318 ~~w~~~fd~~~~~~~p 333 (2441)
+||+..|+-.-...+|
T Consensus 26 A~~n~~f~d~f~~~vP 41 (582)
T PF09731_consen 26 AKQNDNFRDFFEEYVP 41 (582)
T ss_pred hhcChHHHHHHHHhCC
Confidence 3455555433333345
No 51
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.19 E-value=17 Score=50.68 Aligned_cols=6 Identities=33% Similarity=0.589 Sum_probs=2.3
Q ss_pred ceEEee
Q 000070 54 GMLVLS 59 (2441)
Q Consensus 54 gm~vls 59 (2441)
||+++.
T Consensus 647 ~~~~~~ 652 (1758)
T KOG0994|consen 647 GMAIPK 652 (1758)
T ss_pred cccccc
Confidence 343333
No 52
>PTZ00491 major vault protein; Provisional
Probab=84.06 E-value=21 Score=48.86 Aligned_cols=20 Identities=15% Similarity=0.409 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCCCCCcc
Q 000070 497 GRGFPHNDPMHNFSRDKRPL 516 (2441)
Q Consensus 497 ~kGlL~NdpllNFGRDkRl~ 516 (2441)
.+|+.-..++-.||......
T Consensus 583 IR~aVA~~~Fd~FHknsa~i 602 (850)
T PTZ00491 583 VRAAVASEPFDEFHKNSAKI 602 (850)
T ss_pred HHHHHhcCCHHHHhccHHHH
Confidence 45666666666666654433
No 53
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=82.40 E-value=38 Score=46.62 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=20.4
Q ss_pred ccccCCCCCCCCCCCCCCC--CCccccccCcCCccccccccccccccCCC
Q 000070 318 AYWEGDFDMPRPSVLPHKP--AHNVFERWGQRDSETGKVSSSEVARVDPF 365 (2441)
Q Consensus 318 ~~w~~~fd~~~~~~~p~k~--~~~~~~~~g~r~~e~~k~~~~e~~~~~~~ 365 (2441)
+-|+++-=.++--|||--. --.+| +|-||+.---+.-||-.
T Consensus 752 pvy~eepfvF~KVvLpeLA~lRiavy-------eEggK~ig~RIlpvd~l 794 (1189)
T KOG1265|consen 752 PVYEEEPFVFRKVVLPELASLRIAVY-------EEGGKFIGQRILPVDGL 794 (1189)
T ss_pred cccccCCcccceecccchhheeeeee-------ccCCceeeeeccchhcc
Confidence 4566553334455777321 11223 46667666556555543
No 54
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=82.19 E-value=7 Score=50.38 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCCCCC
Q 000070 500 FPHNDPMHNFSRDKR 514 (2441)
Q Consensus 500 lL~NdpllNFGRDkR 514 (2441)
.||+.....|=+..-
T Consensus 204 iL~~e~v~~~l~~~~ 218 (460)
T KOG1363|consen 204 ILCNEAVVDYLRENF 218 (460)
T ss_pred hhhhHHHHHHHhhce
Confidence 344444444444333
No 55
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=81.92 E-value=11 Score=46.86 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=10.2
Q ss_pred ccccCCccccCCCCCCcccCC
Q 000070 743 SFDMSSRNQFARDNSSGFLDR 763 (2441)
Q Consensus 743 ~eemg~Rv~tSr~~dSS~ldR 763 (2441)
..+.+.+.|.+--..|+..||
T Consensus 289 ~~~v~g~~~p~k~~~~sk~dr 309 (361)
T KOG3634|consen 289 PEEVTGRWKPPKVQISSKYDR 309 (361)
T ss_pred hhhhcCCCCCceeehhhhhhh
Confidence 334445555554444445444
No 56
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=81.89 E-value=42 Score=42.03 Aligned_cols=18 Identities=33% Similarity=0.163 Sum_probs=9.9
Q ss_pred cCccCCCcccccccCCCC
Q 000070 997 TSRCDSQSSLSVSSAPDS 1014 (2441)
Q Consensus 997 t~~~dsQsSLSvsspp~s 1014 (2441)
.++..+=||||.|+|-+|
T Consensus 412 sPl~S~GsslspS~~ASS 429 (561)
T KOG1103|consen 412 SPLMSIGSSLSPSLPASS 429 (561)
T ss_pred CcccccccccCCCCcccc
Confidence 344445567776666443
No 57
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=81.68 E-value=9.1 Score=49.24 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=10.0
Q ss_pred CCCCCCCcccccccccC
Q 000070 75 PPPLNLPSLRKEHERFD 91 (2441)
Q Consensus 75 p~plnlpslrkehe~~d 91 (2441)
+.||.--+-.++||--|
T Consensus 17 s~~l~ed~~~~~~ed~d 33 (708)
T KOG3654|consen 17 SKPLSEDPTKAPVEDPD 33 (708)
T ss_pred CcccccccccCCcCCCc
Confidence 44555445556777666
No 58
>PLN02316 synthase/transferase
Probab=81.14 E-value=16 Score=51.24 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=9.1
Q ss_pred CcccccccCCCC--ccccccc
Q 000070 768 NSWRRDAFESGN--SSTFITQ 786 (2441)
Q Consensus 768 nSWrR~~flrq~--SS~F~Pq 786 (2441)
+.|=+.-|.++. .+.|.|+
T Consensus 509 ev~~~g~~NrWth~~~~~~~~ 529 (1036)
T PLN02316 509 EVWFRGSFNRWTHRLGPLPPQ 529 (1036)
T ss_pred eEEEEccccCcCCCCCCCCce
Confidence 445555555554 2235444
No 59
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=80.71 E-value=50 Score=45.59 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=8.1
Q ss_pred ccccCcCCccccccccccc
Q 000070 341 FERWGQRDSETGKVSSSEV 359 (2441)
Q Consensus 341 ~~~~g~r~~e~~k~~~~e~ 359 (2441)
|-++--++|-.--|+..|+
T Consensus 740 ~rtrt~~~n~~npvy~eep 758 (1189)
T KOG1265|consen 740 FRTRTVQGNSFNPVYEEEP 758 (1189)
T ss_pred hhhccccCCCCCcccccCC
Confidence 4333334444444444433
No 60
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=79.87 E-value=92 Score=40.34 Aligned_cols=25 Identities=16% Similarity=0.516 Sum_probs=13.0
Q ss_pred CCCcccchhhhhhhhccCCccccCC
Q 000070 824 YKAGILEPHMDEFTVSRGQRWNMSG 848 (2441)
Q Consensus 824 ~ggG~tD~~LeDYr~~~p~rWni~G 848 (2441)
+++.+....++=-......+|.-++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~rws~~~ 265 (445)
T PRK13428 241 FSGKVGAPTLEVLRTAVSQRWSANS 265 (445)
T ss_pred hCcCCCHHHHHHHHHHHhCccCccc
Confidence 3334444455555566666664443
No 61
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=79.79 E-value=3.4 Score=52.25 Aligned_cols=8 Identities=50% Similarity=0.953 Sum_probs=4.0
Q ss_pred CCCCcCCC
Q 000070 805 AVPRKEFY 812 (2441)
Q Consensus 805 sfprK~f~ 812 (2441)
.|||++|.
T Consensus 360 pyPRReft 367 (506)
T KOG2507|consen 360 PYPRREFT 367 (506)
T ss_pred cccccccc
Confidence 35555544
No 62
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=79.77 E-value=82 Score=37.79 Aligned_cols=15 Identities=40% Similarity=0.430 Sum_probs=9.8
Q ss_pred ccccCCCC-CCCCCCc
Q 000070 529 MKDFGSSS-FDGRDPF 543 (2441)
Q Consensus 529 ~~Dfga~g-~~G~DP~ 543 (2441)
..-||+-| ..|-||-
T Consensus 63 Rk~fGRYG~aSgV~P~ 78 (217)
T PF10147_consen 63 RKLFGRYGLASGVDPG 78 (217)
T ss_pred HHHHHhhhhhcCCChh
Confidence 35677777 5666665
No 63
>PTZ00491 major vault protein; Provisional
Probab=79.71 E-value=14 Score=50.42 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=6.5
Q ss_pred CCcccccCCCC
Q 000070 150 DGVGVYVPPSV 160 (2441)
Q Consensus 150 ~~~~~~~~~s~ 160 (2441)
++.|.|+|..-
T Consensus 198 t~~gaylP~v~ 208 (850)
T PTZ00491 198 RTPGAYLPGVF 208 (850)
T ss_pred eccccccCCCc
Confidence 44667776553
No 64
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=79.06 E-value=55 Score=48.78 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=4.9
Q ss_pred CCccccccc
Q 000070 185 DFPSLQAAL 193 (2441)
Q Consensus 185 dfpsl~a~l 193 (2441)
||.-|...+
T Consensus 302 ~Y~f~~~~~ 310 (1930)
T KOG0161|consen 302 DYKFLSNGE 310 (1930)
T ss_pred hhhhhcccc
Confidence 555555554
No 65
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=78.83 E-value=1.8e+02 Score=40.70 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=5.9
Q ss_pred hccCCccccCCCCC
Q 000070 838 VSRGQRWNMSGDGD 851 (2441)
Q Consensus 838 ~~~p~rWni~GDgd 851 (2441)
-..|..|+-+...+
T Consensus 608 ld~P~~~~~~~~p~ 621 (980)
T KOG0980|consen 608 LDSPLHWRCLTSPD 621 (980)
T ss_pred cCCCcccCcCCCHH
Confidence 33444454444333
No 66
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=76.75 E-value=1.3e+02 Score=38.51 Aligned_cols=13 Identities=15% Similarity=0.084 Sum_probs=5.4
Q ss_pred CCCcccccCCCCC
Q 000070 512 DKRPLLKREEPYQ 524 (2441)
Q Consensus 512 DkRl~~K~mkP~~ 524 (2441)
|++.....|+.|.
T Consensus 131 d~~~G~Ss~Q~F~ 143 (379)
T PF05914_consen 131 DPRCGPSSLQKFD 143 (379)
T ss_pred CCccCchhccccc
Confidence 3344444444443
No 67
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.68 E-value=1.4e+02 Score=35.38 Aligned_cols=7 Identities=29% Similarity=0.249 Sum_probs=2.8
Q ss_pred Hhhhhhh
Q 000070 551 VKKKKDV 557 (2441)
Q Consensus 551 IKKKKEa 557 (2441)
.|+|-+.
T Consensus 43 aKsk~~r 49 (227)
T KOG4691|consen 43 AKSKIER 49 (227)
T ss_pred hhhhhhc
Confidence 3444433
No 68
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=76.61 E-value=89 Score=42.58 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=10.0
Q ss_pred CCcccccCCccccCCCCC
Q 000070 740 LHRSFDMSSRNQFARDNS 757 (2441)
Q Consensus 740 ~er~eemg~Rv~tSr~~d 757 (2441)
+.+.+.++.|+-.|..-|
T Consensus 686 v~rl~ragrrvgi~~~~~ 703 (828)
T PF04094_consen 686 VSRLERAGRRVGISVRRD 703 (828)
T ss_pred HHHHHhhccccccccccc
Confidence 344556666666555444
No 69
>PRK12472 hypothetical protein; Provisional
Probab=76.51 E-value=30 Score=45.09 Aligned_cols=10 Identities=0% Similarity=-0.489 Sum_probs=5.9
Q ss_pred ccCccccccc
Q 000070 469 QYGSEQYNRF 478 (2441)
Q Consensus 469 ~ygiaQygrY 478 (2441)
.|++|..+|+
T Consensus 122 GiaIHGt~~p 131 (508)
T PRK12472 122 GIALHGGPLP 131 (508)
T ss_pred eEEEecCCCC
Confidence 4666666554
No 70
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=76.19 E-value=1.2e+02 Score=34.88 Aligned_cols=12 Identities=8% Similarity=-0.044 Sum_probs=5.6
Q ss_pred ccCCCCCCCCCC
Q 000070 531 DFGSSSFDGRDP 542 (2441)
Q Consensus 531 Dfga~g~~G~DP 542 (2441)
+-|..|.-..|.
T Consensus 16 ~~~~~gmp~ld~ 27 (181)
T PRK13454 16 AASAPGMPQLDF 27 (181)
T ss_pred ccCCCCCCCCcH
Confidence 344544444444
No 71
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.10 E-value=1.1e+02 Score=43.16 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCcccccCCCCCCCccccccCCCC--CCCCCCcchhhhhHHhhhhhhhccccC
Q 000070 504 DPMHNFSRDKRPLLKREEPYQDDPFMKDFGSSS--FDGRDPFSAGLVGVVKKKKDVLKQTDF 563 (2441)
Q Consensus 504 dpllNFGRDkRl~~K~mkP~~EDpf~~Dfga~g--~~G~DP~~~sllalIKKKKEaaKq~E~ 563 (2441)
+.+....+|++..-+. -- ++ +|.|...| .+|-.++...++..+.+-.++..+.+.
T Consensus 632 d~AKkVaf~~~i~~rs-VT-l~---GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~ 688 (1174)
T KOG0933|consen 632 DVAKKVAFDPKIRTRS-VT-LE---GDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRA 688 (1174)
T ss_pred HHHHHhhcccccccce-ee-ec---CceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 3445555665554421 11 22 35666666 444445545555555555555554433
No 72
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=76.03 E-value=31 Score=42.57 Aligned_cols=15 Identities=13% Similarity=0.209 Sum_probs=8.2
Q ss_pred CCCCccccccCcCCc
Q 000070 335 KPAHNVFERWGQRDS 349 (2441)
Q Consensus 335 k~~~~~~~~~g~r~~ 349 (2441)
.|++-.||+|=-|+|
T Consensus 2 ~~~NiM~D~RV~RGn 16 (291)
T PF06098_consen 2 TYGNIMYDRRVVRGN 16 (291)
T ss_pred CcccccCCCCcCCCC
Confidence 355566676644444
No 73
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=74.55 E-value=94 Score=46.63 Aligned_cols=11 Identities=9% Similarity=-0.197 Sum_probs=6.5
Q ss_pred ccCCCCCCCCC
Q 000070 253 RENGGINHDTG 263 (2441)
Q Consensus 253 ~~~~~~~~~~g 263 (2441)
+-++-..|.+.
T Consensus 454 DiaGFEIfe~n 464 (1930)
T KOG0161|consen 454 DIAGFEIFEFN 464 (1930)
T ss_pred eeccccccCcC
Confidence 55666666554
No 74
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=74.46 E-value=1.7e+02 Score=35.38 Aligned_cols=6 Identities=17% Similarity=0.827 Sum_probs=2.5
Q ss_pred cccccc
Q 000070 473 EQYNRF 478 (2441)
Q Consensus 473 aQygrY 478 (2441)
-.||||
T Consensus 64 k~fGRY 69 (217)
T PF10147_consen 64 KLFGRY 69 (217)
T ss_pred HHHHhh
Confidence 334444
No 75
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=73.80 E-value=3.6 Score=56.09 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=4.1
Q ss_pred CCCCccccccC
Q 000070 918 LPPPTLTSMQK 928 (2441)
Q Consensus 918 lPPP~~~s~~r 928 (2441)
..||-..-|.|
T Consensus 899 ~~~~h~~e~lr 909 (982)
T PF03154_consen 899 PHPPHEHEMLR 909 (982)
T ss_pred CCCCccHHhhh
Confidence 33333333333
No 76
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=72.74 E-value=84 Score=45.74 Aligned_cols=6 Identities=33% Similarity=0.529 Sum_probs=2.8
Q ss_pred cccccc
Q 000070 349 SETGKV 354 (2441)
Q Consensus 349 ~e~~k~ 354 (2441)
|-.||.
T Consensus 33 NGsGKS 38 (1353)
T TIGR02680 33 NGAGKS 38 (1353)
T ss_pred CCCcHH
Confidence 345554
No 77
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=72.62 E-value=81 Score=45.91 Aligned_cols=7 Identities=29% Similarity=0.197 Sum_probs=2.9
Q ss_pred eeEEEec
Q 000070 1476 RYVVTAR 1482 (2441)
Q Consensus 1476 ~y~~~~k 1482 (2441)
+++++++
T Consensus 1070 ~~~i~~~ 1076 (1353)
T TIGR02680 1070 GLVVSLV 1076 (1353)
T ss_pred eEEEEEE
Confidence 3444443
No 78
>PLN02316 synthase/transferase
Probab=72.56 E-value=45 Score=47.14 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=4.7
Q ss_pred hhHhhhccc
Q 000070 267 RSEQVRKQE 275 (2441)
Q Consensus 267 ~~e~~rk~~ 275 (2441)
+.|+.||+.
T Consensus 120 ~~~~~~~~~ 128 (1036)
T PLN02316 120 ERENLRKRE 128 (1036)
T ss_pred hHHHHHHHH
Confidence 345555554
No 79
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=70.71 E-value=62 Score=44.24 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=4.6
Q ss_pred CcccccccccC
Q 000070 81 PSLRKEHERFD 91 (2441)
Q Consensus 81 pslrkehe~~d 91 (2441)
|-+.-.|-.+-
T Consensus 83 ~~f~v~~i~~n 93 (717)
T PF10168_consen 83 PLFEVHQISLN 93 (717)
T ss_pred CceeEEEEEEC
Confidence 33444444433
No 80
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=70.23 E-value=1.7e+02 Score=40.86 Aligned_cols=6 Identities=33% Similarity=0.739 Sum_probs=3.2
Q ss_pred cccccc
Q 000070 780 SSTFIT 785 (2441)
Q Consensus 780 SS~F~P 785 (2441)
.-.|+|
T Consensus 574 r~tflp 579 (1164)
T TIGR02169 574 RATFLP 579 (1164)
T ss_pred Ceeecc
Confidence 455655
No 81
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=69.95 E-value=37 Score=43.25 Aligned_cols=47 Identities=23% Similarity=0.313 Sum_probs=22.6
Q ss_pred ccCCCCCCCCcccccCCccccCCCCCCcccCCCCCCCcccccccCCCC-cccccc
Q 000070 732 SASSDSSGLHRSFDMSSRNQFARDNSSGFLDRGKPFNSWRRDAFESGN-SSTFIT 785 (2441)
Q Consensus 732 SsSsDSss~er~eemg~Rv~tSr~~dSS~ldR~KPinSWrR~~flrq~-SS~F~P 785 (2441)
+.+.+...++|.|. -...+||.|.++ .-|+-+-..-+..+. ++-|.|
T Consensus 397 ~~~~e~qyDqRlFn------q~~g~dSg~~~d-d~ynvYD~~wr~~q~~~siYrp 444 (506)
T KOG2441|consen 397 SESGEVQYDQRLFN------QGKGLDSGFADD-DEYNVYDKPWRGAQDISSIYRP 444 (506)
T ss_pred CCCCcchhhHHhhh------cccCcccccccc-ccccccccccccCCchhhhhCC
Confidence 34445555555532 234567777766 344443333333333 444544
No 82
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=69.61 E-value=1.7e+02 Score=38.03 Aligned_cols=15 Identities=27% Similarity=0.250 Sum_probs=6.9
Q ss_pred cCccCCCcccccccC
Q 000070 997 TSRCDSQSSLSVSSA 1011 (2441)
Q Consensus 997 t~~~dsQsSLSvssp 1011 (2441)
+-+|.|=.+-.|=||
T Consensus 383 g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSP 397 (459)
T ss_pred ccccccccceeEECC
Confidence 344444444444444
No 83
>PRK04863 mukB cell division protein MukB; Provisional
Probab=69.33 E-value=1.5e+02 Score=43.72 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=12.2
Q ss_pred cccccCCCcccCCCCCcccccchhhhhc
Q 000070 1091 YDEDEDGYQEEDVPEGDDENIELTQEFE 1118 (2441)
Q Consensus 1091 yded~d~y~~edei~~~deni~l~~e~~ 1118 (2441)
||.-+|=|-.|-.+..=|+..-=++||+
T Consensus 729 ~~~p~d~~li~~~~~~~~~~~~~~~~~~ 756 (1486)
T PRK04863 729 EDCPEDLYLIEGDPDSFDDSVFSVEELE 756 (1486)
T ss_pred cCCccceeeecCChhHHhccCccHHHhc
Confidence 4455566644333332244444444444
No 84
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.78 E-value=1.7e+02 Score=38.21 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=4.9
Q ss_pred CCCCCcchhh
Q 000070 538 DGRDPFSAGL 547 (2441)
Q Consensus 538 ~G~DP~~~sl 547 (2441)
...|++...|
T Consensus 204 ~tedl~~e~m 213 (502)
T KOG0982|consen 204 ETEDLLVEGM 213 (502)
T ss_pred chhhhhhhhh
Confidence 3455554444
No 85
>PRK04863 mukB cell division protein MukB; Provisional
Probab=67.76 E-value=1.5e+02 Score=43.81 Aligned_cols=9 Identities=44% Similarity=0.608 Sum_probs=5.5
Q ss_pred cccccccee
Q 000070 1868 SLLAGEKIQ 1876 (2441)
Q Consensus 1868 SLLAgekIQ 1876 (2441)
.|=-||||-
T Consensus 1365 ~lSgGE~~~ 1373 (1486)
T PRK04863 1365 ALSTGEAIG 1373 (1486)
T ss_pred CCCcchhHH
Confidence 455688843
No 86
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=67.05 E-value=83 Score=44.92 Aligned_cols=15 Identities=13% Similarity=0.430 Sum_probs=7.0
Q ss_pred ccCccccccccCCccc
Q 000070 469 QYGSEQYNRFRGDAFQ 484 (2441)
Q Consensus 469 ~ygiaQygrYrG~SfQ 484 (2441)
++.+.|.- |.|-+|-
T Consensus 389 ~f~Gn~LP-FIGfTy~ 403 (1317)
T KOG0612|consen 389 AFSGNHLP-FIGFTYT 403 (1317)
T ss_pred CCcCCcCC-eeeeeec
Confidence 44444443 4554444
No 87
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=66.37 E-value=4.1e+02 Score=37.54 Aligned_cols=9 Identities=22% Similarity=0.091 Sum_probs=3.8
Q ss_pred CCccccccC
Q 000070 525 DDPFMKDFG 533 (2441)
Q Consensus 525 EDpf~~Dfg 533 (2441)
.++|..+|+
T Consensus 311 ~~~~~~~~~ 319 (980)
T KOG0980|consen 311 LDLFEAEPA 319 (980)
T ss_pred ccccccCcc
Confidence 333444444
No 88
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=66.25 E-value=3e+02 Score=34.88 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=6.5
Q ss_pred CCCCCcccccccc
Q 000070 376 GREGNMWRASSSL 388 (2441)
Q Consensus 376 g~e~nsWR~sspl 388 (2441)
|+.-++|+..+.+
T Consensus 53 gr~r~~~~lr~~~ 65 (340)
T KOG3756|consen 53 GRGRGSLLLRRGF 65 (340)
T ss_pred cchhhhhhhhhhh
Confidence 4444466555544
No 89
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=65.77 E-value=1.4e+02 Score=36.23 Aligned_cols=82 Identities=32% Similarity=0.662 Sum_probs=45.6
Q ss_pred CCCCCcccccCCCCCCccCCCCCccccCCCCCCCCcCcccccccCCCCCCCCCcCCcccccC---CCCCCCCCCCcCCCC
Q 000070 2192 TNLPAPIQHLAPGSPLLPLASPLAMFDVSPFQPPSDMSVQARWSHVPAPPLQSVPMSMPLQR---PTDGVLPSQFNHGTS 2268 (2441)
Q Consensus 2192 ~~~p~~~qhl~pg~~~~p~~sp~~mfd~~pfq~~~~m~~q~~w~h~p~~p~~~~p~s~~~~q---~~~~~~~~q~~~~~~ 2268 (2441)
+-|| |-|=-||.+-||=.-+++-||- . +--.||. +|...||-.-|+-. ++++-++.-+|.+.
T Consensus 187 p~mp--i~~g~p~~~p~pg~p~~s~~~~----~----~~~~r~~----~p~~~vp~~pp~~~~~~~~~~q~~~~~~qg~- 251 (341)
T KOG2893|consen 187 PRMP--IGHGPPGGPPMPGPPQRSRFDQ----P----DGGDRWG----PPMRGVPRTPPYENEHEHQDYQAPDDYNQGG- 251 (341)
T ss_pred CcCc--CCCCCCCCCCCCCCCccccccC----C----CCCCCCC----CCcCCCCCCCCcCCcccccccccchhhhcCC-
Confidence 3466 6777777777777677777753 1 1125775 45555555444433 12444444455544
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCcc
Q 000070 2269 ADQSSASNRFPESRNSTPSDSSQNFH 2294 (2441)
Q Consensus 2269 ~d~~~~~~rf~~~~~s~~~~~~~~f~ 2294 (2441)
-..||.+..-+++.. -..|+
T Consensus 252 -----~~~~fr~~~r~~p~~-~s~~~ 271 (341)
T KOG2893|consen 252 -----YDDRFREGDRGGPPG-GSRFD 271 (341)
T ss_pred -----ccccccccccCCCCC-CCCCC
Confidence 245788877666543 34464
No 90
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=65.68 E-value=2.4e+02 Score=38.67 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=6.4
Q ss_pred ccccchhhhccccc
Q 000070 1078 AVENDERLHEQEEY 1091 (2441)
Q Consensus 1078 ~~~~~e~~~eqeey 1091 (2441)
+.++++...++++|
T Consensus 893 T~e~e~l~ek~~~~ 906 (961)
T KOG4673|consen 893 TAECEKLREKADRV 906 (961)
T ss_pred HHHHHHHHHHHHhh
Confidence 33444444444444
No 91
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=65.63 E-value=2.2e+02 Score=38.60 Aligned_cols=9 Identities=56% Similarity=0.962 Sum_probs=5.1
Q ss_pred ccccccccC
Q 000070 187 PSLQAALPA 195 (2441)
Q Consensus 187 psl~a~lp~ 195 (2441)
|++.+.||.
T Consensus 47 p~~~~~l~~ 55 (594)
T PF05667_consen 47 PSLGSSLPR 55 (594)
T ss_pred ccccCCCcc
Confidence 555555554
No 92
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=64.82 E-value=1.4e+02 Score=42.74 Aligned_cols=6 Identities=33% Similarity=1.149 Sum_probs=2.9
Q ss_pred cccccc
Q 000070 904 SFGRSR 909 (2441)
Q Consensus 904 sfgR~R 909 (2441)
.||+.|
T Consensus 731 aygk~r 736 (1293)
T KOG0996|consen 731 AYGKDR 736 (1293)
T ss_pred hhcCCC
Confidence 455544
No 93
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=63.23 E-value=33 Score=44.21 Aligned_cols=20 Identities=45% Similarity=0.689 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCCCCCCce
Q 000070 36 HSGYYGSNRARPTGGGGGGM 55 (2441)
Q Consensus 36 ~~g~~~~~~~~~~~~~gggm 55 (2441)
++|+.+...+.+|+++||||
T Consensus 71 ~s~~g~~s~~~gg~~~~~g~ 90 (641)
T KOG3915|consen 71 GSGGGGGSSGNGGGGGGGGG 90 (641)
T ss_pred CCCCCccccCCCCCCCCCCC
Confidence 33343344444444555555
No 94
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=63.20 E-value=1e+02 Score=42.10 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=9.5
Q ss_pred cCCCCCCCCCcc
Q 000070 912 MRHPRVLPPPTL 923 (2441)
Q Consensus 912 mRqPRVlPPP~~ 923 (2441)
||++-|+++|.-
T Consensus 440 ~~~~~~~~~p~~ 451 (916)
T KOG0249|consen 440 MDRMGVMTLPSD 451 (916)
T ss_pred ccCCccccCccc
Confidence 688999998843
No 95
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=63.11 E-value=1.4e+02 Score=41.16 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=9.3
Q ss_pred CCccccCCCCCCCccc
Q 000070 69 VPKLSVPPPLNLPSLR 84 (2441)
Q Consensus 69 ~~klsvp~plnlpslr 84 (2441)
--|-|--.|+| |-++
T Consensus 229 elkrSTel~in-PD~~ 243 (1424)
T KOG4572|consen 229 ELKRSTELPIN-PDEK 243 (1424)
T ss_pred hhccccccCCC-CCCc
Confidence 55666666777 5554
No 96
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.75 E-value=1.2e+02 Score=38.00 Aligned_cols=9 Identities=33% Similarity=0.689 Sum_probs=4.3
Q ss_pred cCCCCCCcc
Q 000070 398 IGDNRNGIC 406 (2441)
Q Consensus 398 ~gneR~Gig 406 (2441)
+-|.|-.+|
T Consensus 143 ~hDsRiH~C 151 (406)
T KOG3859|consen 143 YHDSRIHVC 151 (406)
T ss_pred hccCceEEE
Confidence 444454544
No 97
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.50 E-value=2.5e+02 Score=39.56 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=20.6
Q ss_pred cccCCCCCCcccccCCCCCCCCCCCCCCCCCccccccCc-CCcccc
Q 000070 308 DRDHGFSKSEAYWEGDFDMPRPSVLPHKPAHNVFERWGQ-RDSETG 352 (2441)
Q Consensus 308 ~rd~gfsk~e~~w~~~fd~~~~~~~p~k~~~~~~~~~g~-r~~e~~ 352 (2441)
|+..|--+.--|++- .+++.+|-|.-| |.-|.+
T Consensus 46 GKNnGsVqg~qYF~C------------d~ncG~FVr~sq~r~lEda 79 (1243)
T KOG0971|consen 46 GKNNGSVQGVQYFEC------------DENCGVFVRSSQVRELEDA 79 (1243)
T ss_pred CCCCCcccceeeEec------------CCCcceEeehhhhHHhhcc
Confidence 456666566667543 246677887777 666654
No 98
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=62.32 E-value=1.3e+02 Score=39.47 Aligned_cols=13 Identities=15% Similarity=-0.008 Sum_probs=5.2
Q ss_pred CccccccCcCCcc
Q 000070 338 HNVFERWGQRDSE 350 (2441)
Q Consensus 338 ~~~~~~~g~r~~e 350 (2441)
|.-+.--|-|.+-
T Consensus 154 H~cH~dCALr~~~ 166 (446)
T PF07227_consen 154 HWCHLDCALRHEL 166 (446)
T ss_pred ceehhhhhccccc
Confidence 3333333444443
No 99
>PRK12472 hypothetical protein; Provisional
Probab=60.00 E-value=1.5e+02 Score=39.07 Aligned_cols=8 Identities=38% Similarity=0.783 Sum_probs=3.4
Q ss_pred ccccCCCC
Q 000070 909 RYSMRHPR 916 (2441)
Q Consensus 909 RysmRqPR 916 (2441)
||.-+||.
T Consensus 481 ~~~~~~~~ 488 (508)
T PRK12472 481 RYPKPQPA 488 (508)
T ss_pred cCCCCCCC
Confidence 44444443
No 100
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=59.29 E-value=3.2e+02 Score=38.06 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=14.0
Q ss_pred cccccCcCCccCC--ccccccccchh
Q 000070 1061 NMIAPASSISAGD--DEEWAVENDER 1084 (2441)
Q Consensus 1061 ~~~~~~s~vs~~~--d~ew~~~~~e~ 1084 (2441)
-+|+|-.-|+-+| .+-|.+.+---
T Consensus 812 grmnGwlRVyRdd~~~stwl~~wamm 837 (1265)
T KOG0976|consen 812 GRMNGWLRVYRDDAEASTWLLGWAMM 837 (1265)
T ss_pred hhcccceeeeccccchhHHHHHHHHh
Confidence 3566655555555 55677766544
No 101
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=58.95 E-value=2.9e+02 Score=36.15 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=4.8
Q ss_pred ccCCCCCCCCC
Q 000070 531 DFGSSSFDGRD 541 (2441)
Q Consensus 531 Dfga~g~~G~D 541 (2441)
=||.+--.+++
T Consensus 202 LFGpp~~~~~n 212 (575)
T KOG4403|consen 202 LFGPPYKTNHN 212 (575)
T ss_pred EecCCcCCCcc
Confidence 35544444443
No 102
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=57.89 E-value=15 Score=51.89 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=6.1
Q ss_pred CCCCCccccccc
Q 000070 376 GREGNMWRASSS 387 (2441)
Q Consensus 376 g~e~nsWR~ssp 387 (2441)
+-+-.+|-++..
T Consensus 1924 ~~~p~s~~a~~~ 1935 (2220)
T KOG3598|consen 1924 AAAPTSWNAPIA 1935 (2220)
T ss_pred hcCCccccccch
Confidence 344555655543
No 103
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=57.42 E-value=3.3e+02 Score=39.36 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=4.5
Q ss_pred CCCCCCcccc
Q 000070 916 RVLPPPTLTS 925 (2441)
Q Consensus 916 RVlPPP~~~s 925 (2441)
.|-|.-++|+
T Consensus 645 ~~~~~G~~tG 654 (1163)
T COG1196 645 LVEPSGSITG 654 (1163)
T ss_pred EEeCCeeeec
Confidence 4444444444
No 104
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=55.59 E-value=6.1e+02 Score=33.38 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=8.7
Q ss_pred cCCcccccCCCCCCCCCC
Q 000070 871 YGDVGWGQGRYRGNVHPP 888 (2441)
Q Consensus 871 ~GD~gW~qS~srgrp~PP 888 (2441)
||..=.+...+|+..+|.
T Consensus 478 ~g~~llA~r~sH~s~~~t 495 (552)
T KOG2129|consen 478 PGHRLLAERRSHGSSPPT 495 (552)
T ss_pred CchhHHHHHHhcCCCCcc
Confidence 344344555555554443
No 105
>COG4499 Predicted membrane protein [Function unknown]
Probab=55.35 E-value=27 Score=44.42 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=15.2
Q ss_pred hhhhhHHhhhhhhhccccCCCcchhh
Q 000070 545 AGLVGVVKKKKDVLKQTDFHDPVRES 570 (2441)
Q Consensus 545 ~sllalIKKKKEaaKq~E~EEK~REE 570 (2441)
.-++++++++.+..--...-...|++
T Consensus 344 ~~~~Al~k~~eevksn~~lsg~~r~e 369 (434)
T COG4499 344 LTLLALTKLYEEVKSNTDLSGDKRQE 369 (434)
T ss_pred hHHHHHHHHHHHHhcccCCCchHHHH
Confidence 44667777777766555555444433
No 106
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=55.21 E-value=1.8e+02 Score=37.41 Aligned_cols=6 Identities=0% Similarity=0.528 Sum_probs=2.3
Q ss_pred cccchh
Q 000070 1109 ENIELT 1114 (2441)
Q Consensus 1109 eni~l~ 1114 (2441)
+++|.-
T Consensus 453 DsMDFL 458 (510)
T PF04747_consen 453 DSMDFL 458 (510)
T ss_pred ccchHH
Confidence 333333
No 107
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=54.56 E-value=4.8e+02 Score=37.68 Aligned_cols=23 Identities=9% Similarity=0.052 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCCCCCCCccccc
Q 000070 435 SGRRDIDYGPGGRQPWNNSVHSF 457 (2441)
Q Consensus 435 SGgRDSg~G~~g~qP~n~~mSSw 457 (2441)
..+++-.++....+++..-+...
T Consensus 557 ~~~~~y~~~~~p~~~~pTil~~l 579 (1074)
T KOG0250|consen 557 FTPFDYSVGRNPGYEFPTILDAL 579 (1074)
T ss_pred CCccccccccCCCCCCCceeeee
Confidence 44555555555555443333333
No 108
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=54.28 E-value=52 Score=42.05 Aligned_cols=9 Identities=22% Similarity=0.099 Sum_probs=4.9
Q ss_pred CCCCCCccc
Q 000070 447 RQPWNNSVH 455 (2441)
Q Consensus 447 ~qP~n~~mS 455 (2441)
+|+.+.||+
T Consensus 189 kqriIrmVe 197 (506)
T KOG2441|consen 189 KQRIIRMVE 197 (506)
T ss_pred hhhhhhhhh
Confidence 355655554
No 109
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=53.61 E-value=4.9e+02 Score=34.24 Aligned_cols=8 Identities=38% Similarity=0.119 Sum_probs=3.4
Q ss_pred cccccccC
Q 000070 1004 SSLSVSSA 1011 (2441)
Q Consensus 1004 sSLSvssp 1011 (2441)
.+|.++++
T Consensus 354 ~~lLsssR 361 (459)
T KOG0288|consen 354 LELLSSSR 361 (459)
T ss_pred eEEeeecC
Confidence 34444443
No 110
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=51.37 E-value=1.7e+02 Score=38.36 Aligned_cols=6 Identities=33% Similarity=0.085 Sum_probs=2.3
Q ss_pred cCCccc
Q 000070 479 RGDAFQ 484 (2441)
Q Consensus 479 rG~SfQ 484 (2441)
+-..||
T Consensus 262 il~ff~ 267 (446)
T PF07227_consen 262 ILQFFQ 267 (446)
T ss_pred HHHHHh
Confidence 333444
No 111
>PRK03918 chromosome segregation protein; Provisional
Probab=51.21 E-value=6.3e+02 Score=34.96 Aligned_cols=7 Identities=43% Similarity=0.601 Sum_probs=4.6
Q ss_pred ccccccc
Q 000070 349 SETGKVS 355 (2441)
Q Consensus 349 ~e~~k~~ 355 (2441)
|-+||.+
T Consensus 32 nG~GKSt 38 (880)
T PRK03918 32 NGSGKSS 38 (880)
T ss_pred CCCCHHH
Confidence 6677755
No 112
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=50.34 E-value=1.6e+02 Score=36.36 Aligned_cols=6 Identities=50% Similarity=0.600 Sum_probs=2.6
Q ss_pred HHhhhh
Q 000070 550 VVKKKK 555 (2441)
Q Consensus 550 lIKKKK 555 (2441)
+|+|+.
T Consensus 41 FV~K~~ 46 (276)
T PF06991_consen 41 FVPKKQ 46 (276)
T ss_pred eecccc
Confidence 444443
No 113
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=49.39 E-value=67 Score=42.14 Aligned_cols=7 Identities=57% Similarity=0.904 Sum_probs=3.2
Q ss_pred cCCCCCC
Q 000070 310 DHGFSKS 316 (2441)
Q Consensus 310 d~gfsk~ 316 (2441)
|-||-+.
T Consensus 171 dmgFe~~ 177 (567)
T KOG0345|consen 171 DMGFEAS 177 (567)
T ss_pred cccHHHH
Confidence 4555433
No 114
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=47.02 E-value=7.5e+02 Score=36.38 Aligned_cols=17 Identities=12% Similarity=-0.211 Sum_probs=7.3
Q ss_pred CCcccCCCCCccccccC
Q 000070 1320 VPYVQPNVPANFSLNQN 1336 (2441)
Q Consensus 1320 ~~~vq~~~p~~~~~nqn 1336 (2441)
++.|+++.+..-.++|.
T Consensus 1203 ~~~v~~~~~~~~~l~~~ 1219 (1317)
T KOG0612|consen 1203 NSLVHKGHEFIPFLYHF 1219 (1317)
T ss_pred hhhcCCCCcchHHHhhc
Confidence 34444444444344443
No 115
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.10 E-value=6.8e+02 Score=36.67 Aligned_cols=10 Identities=20% Similarity=0.534 Sum_probs=4.0
Q ss_pred hHHhhhhhhh
Q 000070 549 GVVKKKKDVL 558 (2441)
Q Consensus 549 alIKKKKEaa 558 (2441)
+++.++.+..
T Consensus 309 ~fL~kenel~ 318 (1293)
T KOG0996|consen 309 EFLKKENELF 318 (1293)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 116
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=43.61 E-value=7e+02 Score=34.88 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=7.7
Q ss_pred ccCCCCCccccCCCCce
Q 000070 1460 LTGSKAQGLTSGSRGKR 1476 (2441)
Q Consensus 1460 ~~~~k~~g~~sg~rgr~ 1476 (2441)
+-..++-+++.-|+-||
T Consensus 819 ~Le~eF~nLi~~gtdrr 835 (916)
T KOG0249|consen 819 LLEREFNNLLALGTDRR 835 (916)
T ss_pred HHHHHHHhhhccccccc
Confidence 33344445555554444
No 117
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.39 E-value=6.8e+02 Score=36.12 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=3.1
Q ss_pred cccccc
Q 000070 780 SSTFIT 785 (2441)
Q Consensus 780 SS~F~P 785 (2441)
-++|+|
T Consensus 1043 Fs~LLP 1048 (1174)
T KOG0933|consen 1043 FSTLLP 1048 (1174)
T ss_pred HHHhCC
Confidence 445555
No 118
>PF15359 CDV3: Carnitine deficiency-associated protein 3
Probab=42.16 E-value=61 Score=36.10 Aligned_cols=62 Identities=29% Similarity=0.443 Sum_probs=33.6
Q ss_pred CCCCCCccccccccccCcccCCCCccCCCCCCCCCcccccCCCCccCCC-CCCccCCCccccccccc-cCCCccccccc
Q 000070 117 GWTKPGTAVGSDQKINDKVDQGPHSVDGLSKGNDGVGVYVPPSVRSGTV-GPALSSFAPAEKASVLR-GEDFPSLQAAL 193 (2441)
Q Consensus 117 gwtkp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~ek~~vlr-gedfpsl~a~l 193 (2441)
=|.|++++.......- +... --...++|||.||.+|-... -....+ |==|- =+-||||+||.
T Consensus 60 PWnk~~~~~~~~~~~~--v~~~-------~~p~~~~gvY~PP~~R~~~~~r~~~qg------aPdI~Se~~FPSL~sta 123 (129)
T PF15359_consen 60 PWNKSAPAQAPPAPAP--VEEP-------PEPATTSGVYRPPAARNTTTKRKRPQG------APDIFSEEQFPSLQSTA 123 (129)
T ss_pred CCcCCCCCCCCCCCCc--cCCC-------CCCCCCCceecCcccccccccCCCCCC------CCCccccccccchHHHh
Confidence 6999887544444432 1111 11356789999999993331 111111 11111 24799999874
No 119
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=41.53 E-value=8.1e+02 Score=35.61 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=13.3
Q ss_pred CccccCCCccccccccc
Q 000070 404 GICERPSSLNREANKET 420 (2441)
Q Consensus 404 GigvRP~SRnRgaSkkS 420 (2441)
|||.|.+.-+||.+.+.
T Consensus 85 glG~rAs~tnRgsslK~ 101 (1074)
T KOG0250|consen 85 GLGGRASATNRGSSLKD 101 (1074)
T ss_pred hhccccccccchhhHHH
Confidence 67789989999988443
No 120
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=38.63 E-value=9.5e+02 Score=34.04 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=8.3
Q ss_pred CCCccccceeee
Q 000070 1506 RRPRRQRTEFRV 1517 (2441)
Q Consensus 1506 Rr~~~~rtefrv 1517 (2441)
++.+--|||||-
T Consensus 1198 ~tvlaeRt~l~c 1209 (1265)
T KOG0976|consen 1198 HTVLAERTELRC 1209 (1265)
T ss_pred hhhhhhhhheee
Confidence 356677888874
No 121
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=37.92 E-value=18 Score=49.98 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=14.6
Q ss_pred cccchhhhhccccccccCCCCcccceeec
Q 000070 1109 ENIELTQEFEGIHLEEKGSPHMMSNLVLG 1137 (2441)
Q Consensus 1109 eni~l~~e~~~~hl~~k~~p~~~~~~vlg 1137 (2441)
.+|-|+|-.- +|-..-+..-+||.|..|
T Consensus 853 shlhlhqq~~-~h~~~~~~hpl~dpla~g 880 (982)
T PF03154_consen 853 SHLHLHQQDA-LHQASAAVHPLVDPLAAG 880 (982)
T ss_pred HHHHhhcccc-ccccccCCccccchhccc
Confidence 4555555322 555444444466776655
No 122
>PLN03188 kinesin-12 family protein; Provisional
Probab=37.77 E-value=1.2e+03 Score=34.72 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=11.9
Q ss_pred ccCCCccccccccccccCCC
Q 000070 407 ERPSSLNREANKETKFMSSP 426 (2441)
Q Consensus 407 vRP~SRnRgaSkkSkYkSSP 426 (2441)
+.|++..=.+...++.-.+|
T Consensus 671 ~~~~~lsi~p~~~~~~l~~p 690 (1320)
T PLN03188 671 ASPSSLSIVPVEVSPVLKSP 690 (1320)
T ss_pred CCccccccccccccccccCC
Confidence 46666666666666654444
No 123
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=37.62 E-value=1.7e+02 Score=38.91 Aligned_cols=10 Identities=30% Similarity=0.531 Sum_probs=5.7
Q ss_pred CCCCCCCCCC
Q 000070 488 ASKSSFSSGG 497 (2441)
Q Consensus 488 ~SKssfs~G~ 497 (2441)
.++..||.|.
T Consensus 304 ssr~l~F~~~ 313 (591)
T KOG2505|consen 304 SSRNLFFEGD 313 (591)
T ss_pred cccceeecCC
Confidence 3455666664
No 124
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=37.51 E-value=5.9e+02 Score=35.62 Aligned_cols=8 Identities=13% Similarity=0.468 Sum_probs=3.3
Q ss_pred cccccccc
Q 000070 352 GKVSSSEV 359 (2441)
Q Consensus 352 ~k~~~~e~ 359 (2441)
++|..|++
T Consensus 326 ~~i~vSql 333 (809)
T KOG0247|consen 326 NQITVSQL 333 (809)
T ss_pred CceeEEee
Confidence 34444444
No 125
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=37.33 E-value=6.7e+02 Score=33.19 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=13.8
Q ss_pred cccch--hhhhhhhccCCccccCCC
Q 000070 827 GILEP--HMDEFTVSRGQRWNMSGD 849 (2441)
Q Consensus 827 G~tD~--~LeDYr~~~p~rWni~GD 849 (2441)
.|+|- .+.|+-..+...++++=+
T Consensus 373 afLd~L~qf~~e~~~k~~~~~lPy~ 397 (447)
T KOG2751|consen 373 AFLDCLKQFADELEKKDTSFNLPYD 397 (447)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcch
Confidence 34444 456666777777766653
No 126
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.60 E-value=6.1e+02 Score=35.02 Aligned_cols=15 Identities=20% Similarity=0.058 Sum_probs=7.3
Q ss_pred CCCCcchhHhhhccc
Q 000070 261 DTGSARRSEQVRKQE 275 (2441)
Q Consensus 261 ~~g~~~~~e~~rk~~ 275 (2441)
.+|-.|.-=-.||+-
T Consensus 210 SLGITCIELAERkPP 224 (948)
T KOG0577|consen 210 SLGITCIELAERKPP 224 (948)
T ss_pred eccchhhhhhhcCCC
Confidence 345555444445543
No 127
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=36.27 E-value=1.5e+03 Score=32.22 Aligned_cols=7 Identities=43% Similarity=0.558 Sum_probs=3.8
Q ss_pred ccccccc
Q 000070 349 SETGKVS 355 (2441)
Q Consensus 349 ~e~~k~~ 355 (2441)
|=+||.+
T Consensus 34 nGsGKSS 40 (908)
T COG0419 34 NGAGKSS 40 (908)
T ss_pred CCCcHHH
Confidence 4556654
No 128
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.10 E-value=1.4e+03 Score=31.92 Aligned_cols=18 Identities=28% Similarity=0.076 Sum_probs=8.2
Q ss_pred ccccccccchhhhccccc
Q 000070 1074 DEEWAVENDERLHEQEEY 1091 (2441)
Q Consensus 1074 d~ew~~~~~e~~~eqeey 1091 (2441)
.|||-...-..+.+|-||
T Consensus 815 lde~qe~E~q~l~~ql~q 832 (948)
T KOG0577|consen 815 LDEAQEAECQVLREQLEQ 832 (948)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 444543333445555444
No 129
>KOG1425 consensus Microfibrillar-associated protein MFAP1 [Cytoskeleton]
Probab=35.91 E-value=2.9e+02 Score=35.55 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=13.2
Q ss_pred hhhcccccCCCCCCCCcccccCCcc-ccCC
Q 000070 726 VERITTSASSDSSGLHRSFDMSSRN-QFAR 754 (2441)
Q Consensus 726 vDri~TSsSsDSss~er~eemg~Rv-~tSr 754 (2441)
..|....+..+-.+..++.--+..| +|-+
T Consensus 347 ~KRDfseaT~ed~~dKtILPKvMQVKnFgr 376 (430)
T KOG1425|consen 347 LKRDFSEATLEDHLDKTILPKVMQVKNFGR 376 (430)
T ss_pred Hhhccccccccccccccccccceeeccccc
Confidence 3333434444444555555445555 4433
No 130
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=35.57 E-value=1.5e+03 Score=31.97 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=14.0
Q ss_pred cCCccccCCCCCCcccCCCC-CCCccccccc
Q 000070 746 MSSRNQFARDNSSGFLDRGK-PFNSWRRDAF 775 (2441)
Q Consensus 746 mg~Rv~tSr~~dSS~ldR~K-PinSWrR~~f 775 (2441)
++..+.-+.+..+.|....+ -...|+...|
T Consensus 286 L~~Kvqp~d~Le~e~~~K~q~LL~~WREKVF 316 (739)
T PF07111_consen 286 LCRKVQPSDPLEPEFSRKCQQLLSRWREKVF 316 (739)
T ss_pred HhccCCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 33444444444444443322 3456777655
No 131
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=34.63 E-value=1.5e+02 Score=39.14 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=6.9
Q ss_pred cCCCCCCccccccc
Q 000070 374 REGREGNMWRASSS 387 (2441)
Q Consensus 374 reg~e~nsWR~ssp 387 (2441)
|-||+||+-.+.-|
T Consensus 350 R~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 350 RAGREGNAIVFLNP 363 (567)
T ss_pred hccCccceEEEecc
Confidence 44555555544444
No 132
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.39 E-value=1.1e+02 Score=38.58 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=7.3
Q ss_pred cccccCCCCCCCCC
Q 000070 908 SRYSMRHPRVLPPP 921 (2441)
Q Consensus 908 ~RysmRqPRVlPPP 921 (2441)
-|=-|.-||-.+-|
T Consensus 402 E~gA~~n~~~anKp 415 (469)
T KOG3878|consen 402 ERGAVNNPTAANKP 415 (469)
T ss_pred hhhhhcCCCCCCCC
Confidence 34455555555544
No 133
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.09 E-value=8.2e+02 Score=31.50 Aligned_cols=6 Identities=33% Similarity=0.390 Sum_probs=2.6
Q ss_pred CCCCCC
Q 000070 537 FDGRDP 542 (2441)
Q Consensus 537 ~~G~DP 542 (2441)
..|+|-
T Consensus 86 v~GnDr 91 (469)
T KOG3878|consen 86 VIGNDR 91 (469)
T ss_pred cccChH
Confidence 344443
No 134
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=31.79 E-value=1.6e+02 Score=39.50 Aligned_cols=7 Identities=14% Similarity=0.226 Sum_probs=3.3
Q ss_pred ccccccC
Q 000070 85 KEHERFD 91 (2441)
Q Consensus 85 kehe~~d 91 (2441)
++-|+|+
T Consensus 10 ~~~~~~~ 16 (563)
T KOG2341|consen 10 ETDEGVS 16 (563)
T ss_pred ccccccc
Confidence 3444444
No 135
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=31.62 E-value=77 Score=40.07 Aligned_cols=57 Identities=32% Similarity=0.646 Sum_probs=36.6
Q ss_pred ccccCCCCCCCcccccccccCCCCCCCCC-----------------C----------CCCCCCCCCCCCCCCCCCCCCCc
Q 000070 71 KLSVPPPLNLPSLRKEHERFDSSGSNGGP-----------------A----------GGGVSGAGQRPGSSGTGWTKPGT 123 (2441)
Q Consensus 71 klsvp~plnlpslrkehe~~ds~g~~~g~-----------------~----------~~~~~g~g~rp~ssg~gwtkp~~ 123 (2441)
.-.||||-..||.++...-||--|+-||. . ||-|+|-|.+-...|.||-+|+.
T Consensus 310 nE~~ppppempswqqqq~~~~~~ggrgggkg~f~~~~~~~~~~~eqgg~Rgg~Gg~~gGrGgGRGggG~GGGggyqqp~~ 389 (465)
T KOG3973|consen 310 NEMVPPPPEMPSWQQQQHTFDRQGGRGGGKGTFDRPKTHEEQVLEQGGSRGGSGGNWGGRGGGRGGGGRGGGGGYQQPQQ 389 (465)
T ss_pred ccCCCCCCCCCcHHHhcCCCCCCCCcCCCCCCCcCccccccchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCchh
Confidence 34589999999999988888866654333 0 11122333344556689998876
Q ss_pred cccc
Q 000070 124 AVGS 127 (2441)
Q Consensus 124 ~~~~ 127 (2441)
--.+
T Consensus 390 ~~~~ 393 (465)
T KOG3973|consen 390 QQQQ 393 (465)
T ss_pred hhhc
Confidence 5544
No 136
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=30.70 E-value=1.5e+03 Score=30.74 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=8.4
Q ss_pred CCCCCcchhhhhHHhh
Q 000070 538 DGRDPFSAGLVGVVKK 553 (2441)
Q Consensus 538 ~G~DP~~~sllalIKK 553 (2441)
.-.||....-..+..|
T Consensus 77 ~~pDPLsPgE~~l~~K 92 (508)
T PF00901_consen 77 EPPDPLSPGEQGLQRK 92 (508)
T ss_pred CCCCCCCHhHHHHHHH
Confidence 3567775554444333
No 137
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=29.01 E-value=1.6e+03 Score=33.09 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=10.7
Q ss_pred cccceeEEeecCCccCCC
Q 000070 1627 LQSGVVRVFEQPGIEAPS 1644 (2441)
Q Consensus 1627 lqsg~vrvf~q~Gie~ps 1644 (2441)
+--.|.+.|++.|||.|-
T Consensus 1061 l~~~I~~~F~~~GIeIPf 1078 (1109)
T PRK10929 1061 IHQLILAGFREHGIDMPF 1078 (1109)
T ss_pred HHHHHHHHHHHCCCcCCC
Confidence 333556666667776664
No 138
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.68 E-value=1.9e+03 Score=31.89 Aligned_cols=7 Identities=29% Similarity=0.325 Sum_probs=3.2
Q ss_pred cccccCC
Q 000070 1303 QMPLLHP 1309 (2441)
Q Consensus 1303 QmPlLH~ 1309 (2441)
||-+||+
T Consensus 1100 qin~l~n 1106 (1243)
T KOG0971|consen 1100 QINALRN 1106 (1243)
T ss_pred HHHHHHH
Confidence 4444554
No 139
>PLN03188 kinesin-12 family protein; Provisional
Probab=28.12 E-value=1.7e+03 Score=33.39 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=6.3
Q ss_pred CccccCCCCCCC
Q 000070 70 PKLSVPPPLNLP 81 (2441)
Q Consensus 70 ~klsvp~plnlp 81 (2441)
+||-.|-|.+.|
T Consensus 65 ~~~~sp~p~~pp 76 (1320)
T PLN03188 65 AKLKSPLPPRPP 76 (1320)
T ss_pred ccccCCCCCCCC
Confidence 455555555555
No 140
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=27.36 E-value=43 Score=42.13 Aligned_cols=20 Identities=45% Similarity=0.790 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCCCCCCce
Q 000070 36 HSGYYGSNRARPTGGGGGGM 55 (2441)
Q Consensus 36 ~~g~~~~~~~~~~~~~gggm 55 (2441)
+||+.|..+|.+||||+||+
T Consensus 441 gggr~gggrgrgggggrg~y 460 (465)
T KOG3973|consen 441 GGGRDGGGRGRGGGGGRGGY 460 (465)
T ss_pred CCCCCCCCCCCCCCCCCccc
Confidence 44444444444455555553
No 141
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.96 E-value=1.7e+03 Score=30.01 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=5.5
Q ss_pred CCCCCccccc
Q 000070 376 GREGNMWRAS 385 (2441)
Q Consensus 376 g~e~nsWR~s 385 (2441)
|...|+|-..
T Consensus 235 ~~~~~Lwicl 244 (493)
T KOG0804|consen 235 GCTEDLWICL 244 (493)
T ss_pred cccccEEEEE
Confidence 5555666544
No 142
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=26.69 E-value=1.7e+02 Score=40.43 Aligned_cols=38 Identities=42% Similarity=0.725 Sum_probs=20.0
Q ss_pred CCCCCCCCCccCCC-CCCCCCCCCC-cEEEcccCccCcccc
Q 000070 2106 GPPAGYTGPFISPT-GGIPGVQGPP-HMVVYNHFAPVGQFG 2144 (2441)
Q Consensus 2106 ~pp~gf~gpfi~p~-g~ipgvqgpp-hm~vynhfapvgqfg 2144 (2441)
.||-||.||---|| ||.+|-+-|| -|-.+ +-|||=-||
T Consensus 574 ppppg~~gppPPPpp~g~~Gg~ppPP~~gm~-pmaPvlP~g 613 (1102)
T KOG1924|consen 574 PPPPGGGGPPPPPPPGGFLGGPPPPPPPGMF-PMAPVLPFG 613 (1102)
T ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCCCCCcc-cccccCCCC
Confidence 46668888765543 6666554433 22221 246665555
No 143
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=26.61 E-value=1.7e+03 Score=30.00 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=9.0
Q ss_pred ccCCcchh--hhhhhhh
Q 000070 714 ADVGDWED--GERMVER 728 (2441)
Q Consensus 714 aDldDwEd--sERmvDr 728 (2441)
+-.++|.+ .+|+++.
T Consensus 200 K~rG~WGE~qLerILE~ 216 (475)
T PRK10361 200 KTQGNWGEVVLTRVLEA 216 (475)
T ss_pred CcCcchHHHHHHHHHHH
Confidence 45677766 5566653
No 144
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.96 E-value=1.9e+03 Score=30.25 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=14.8
Q ss_pred hhhhcccccccccCCCcccCCCCCcccccch
Q 000070 1083 ERLHEQEEYDEDEDGYQEEDVPEGDDENIEL 1113 (2441)
Q Consensus 1083 e~~~eqeeyded~d~y~~edei~~~deni~l 1113 (2441)
.++++|.-|.+..--| |-+|.+-++.+-|
T Consensus 425 ~~l~~~~n~tde~~~~--e~evq~l~~kl~l 453 (772)
T KOG0999|consen 425 KALYHQLNYTDEKVQY--EKEVQELVEKLRL 453 (772)
T ss_pred HHHHHhhcccchhhhH--HHHHHHHHHHHHH
Confidence 3456666665544444 5555554544433
No 145
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=24.65 E-value=2.1e+02 Score=39.35 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=18.4
Q ss_pred CcccccCCCCccCCCCCCccC--CCccccccccc
Q 000070 151 GVGVYVPPSVRSGTVGPALSS--FAPAEKASVLR 182 (2441)
Q Consensus 151 ~~~~~~~~s~~~~~~~~~~~~--~~~~ek~~vlr 182 (2441)
..-|..|.|+.|-+|...... -.....++||.
T Consensus 73 s~~vhApvSG~V~~I~~~~~~h~sg~~~~~ivIe 106 (695)
T PRK05035 73 SLPVHAPTSGTVVAIEPHPTAHPSGLAELCVVIE 106 (695)
T ss_pred eeEEeCCCCeEEeeeccccccCCCCcccceEEEc
Confidence 345667777777777643221 23445567776
No 146
>PTZ00332 paraflagellar rod protein; Provisional
Probab=23.95 E-value=1.8e+03 Score=30.15 Aligned_cols=9 Identities=11% Similarity=0.394 Sum_probs=3.8
Q ss_pred hhHHhhhhh
Q 000070 548 VGVVKKKKD 556 (2441)
Q Consensus 548 lalIKKKKE 556 (2441)
++.+.|..+
T Consensus 191 ~~~~~k~~e 199 (589)
T PTZ00332 191 LAQLEKTNE 199 (589)
T ss_pred HHHHHHHHH
Confidence 344444443
No 147
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.80 E-value=51 Score=45.49 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=12.5
Q ss_pred cCCCCCcccccchhhhhcccccccc
Q 000070 1101 EDVPEGDDENIELTQEFEGIHLEEK 1125 (2441)
Q Consensus 1101 edei~~~deni~l~~e~~~~hl~~k 1125 (2441)
+|-..+.++-+++.++.-+.-++|.
T Consensus 1426 dd~D~dd~~e~~~~D~~d~~~s~eD 1450 (1516)
T KOG1832|consen 1426 DDLDRDDGLEGDNSDSGDDDLSSED 1450 (1516)
T ss_pred cccccccchhccccccccccccccc
Confidence 3333333556666666555444443
No 148
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=23.33 E-value=9e+02 Score=33.52 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=29.1
Q ss_pred cccCCCCCcccccchhhhhcc--ccccccCCCCcccceeeccccceeecCCC
Q 000070 1099 QEEDVPEGDDENIELTQEFEG--IHLEEKGSPHMMSNLVLGFNEGVEVPMPN 1148 (2441)
Q Consensus 1099 ~~edei~~~deni~l~~e~~~--~hl~~k~~p~~~~~~vlgf~egvev~~p~ 1148 (2441)
.+.+-|.++=..=|...||+. .-+.++.-|..+|..+-|.-.=+=.+|..
T Consensus 584 ~q~~li~~AFA~DdV~~eF~~eK~~~~e~e~pk~~~~~LPGWG~W~G~g~~~ 635 (735)
T PF04615_consen 584 EQRELIREAFAGDDVVAEFEKEKEEEIEEEKPKEIDLTLPGWGSWAGPGIKK 635 (735)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhhhCCcccccCCCCcccccCCCcCc
Confidence 345556666233356677764 22335666888888888886544444433
No 149
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=23.21 E-value=5.6e+02 Score=29.43 Aligned_cols=12 Identities=42% Similarity=0.473 Sum_probs=4.8
Q ss_pred cCCCCCCCCCCc
Q 000070 532 FGSSSFDGRDPF 543 (2441)
Q Consensus 532 fga~g~~G~DP~ 543 (2441)
.|++.+.|-+-|
T Consensus 27 ~GSSAGAGSGeF 38 (142)
T PF06658_consen 27 QGSSAGAGSGEF 38 (142)
T ss_pred cccccccCccHH
Confidence 344333444334
No 150
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.15 E-value=5e+02 Score=35.14 Aligned_cols=6 Identities=33% Similarity=0.363 Sum_probs=2.9
Q ss_pred cccccc
Q 000070 412 LNREAN 417 (2441)
Q Consensus 412 RnRgaS 417 (2441)
-+|++-
T Consensus 357 k~RQTm 362 (691)
T KOG0338|consen 357 KNRQTM 362 (691)
T ss_pred ccccce
Confidence 445544
No 151
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=23.02 E-value=2.2e+03 Score=31.51 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=8.1
Q ss_pred CCccccccccCCCCchh
Q 000070 185 DFPSLQAALPAASGSEK 201 (2441)
Q Consensus 185 dfpsl~a~lp~~~~~~~ 201 (2441)
||=-+|+-|+.+.++++
T Consensus 347 ~i~~~q~el~~~~~~e~ 363 (1072)
T KOG0979|consen 347 MILDAQAELQETEDPEN 363 (1072)
T ss_pred HHHHHHhhhhhcCCccc
Confidence 33344555555555444
No 152
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=23.02 E-value=2.5e+03 Score=30.71 Aligned_cols=7 Identities=29% Similarity=0.601 Sum_probs=4.0
Q ss_pred ccccccc
Q 000070 349 SETGKVS 355 (2441)
Q Consensus 349 ~e~~k~~ 355 (2441)
|-+||.+
T Consensus 39 tGaGKSt 45 (1047)
T PRK10246 39 TGAGKTT 45 (1047)
T ss_pred CCCCHHH
Confidence 5566654
No 153
>PLN02372 violaxanthin de-epoxidase
Probab=22.85 E-value=9.5e+02 Score=31.86 Aligned_cols=7 Identities=29% Similarity=0.890 Sum_probs=4.1
Q ss_pred ccccccc
Q 000070 381 MWRASSS 387 (2441)
Q Consensus 381 sWR~ssp 387 (2441)
.||+..|
T Consensus 243 ~wRv~tp 249 (455)
T PLN02372 243 NWRINTP 249 (455)
T ss_pred EEEEecC
Confidence 4666555
No 154
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=22.10 E-value=6.7e+02 Score=34.70 Aligned_cols=7 Identities=0% Similarity=-0.420 Sum_probs=2.9
Q ss_pred ccchhhh
Q 000070 1219 NTQLSAA 1225 (2441)
Q Consensus 1219 ~~~~~~~ 1225 (2441)
+|.+|+.
T Consensus 684 lP~pf~~ 690 (735)
T PF04615_consen 684 LPFPFTS 690 (735)
T ss_pred CCCCCCC
Confidence 3444433
No 155
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=21.86 E-value=30 Score=45.31 Aligned_cols=8 Identities=25% Similarity=-0.055 Sum_probs=0.0
Q ss_pred CCcccccc
Q 000070 379 GNMWRASS 386 (2441)
Q Consensus 379 ~nsWR~ss 386 (2441)
.+.||.++
T Consensus 236 ~~s~rqlS 243 (495)
T PF12004_consen 236 DFSRRQLS 243 (495)
T ss_dssp --------
T ss_pred chhhhhcc
Confidence 44555555
No 156
>PF07415 Herpes_LMP2: Gammaherpesvirus latent membrane protein (LMP2) protein; InterPro: IPR010881 This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) is a human gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear [].; GO: 0019042 latent virus infection, 0033644 host cell membrane; PDB: 2JO9_B 1UXW_C.
Probab=20.75 E-value=34 Score=43.00 Aligned_cols=41 Identities=34% Similarity=0.563 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC
Q 000070 93 SGSNGGPAGGGVSGAGQRPGSSGTGWTKPGTAVGSDQKIND 133 (2441)
Q Consensus 93 ~g~~~g~~~~~~~g~g~rp~ssg~gwtkp~~~~~~~~~~~~ 133 (2441)
-+++|||-|+-++++-.-|+++|.-|..|+.+..++.+.++
T Consensus 14 p~~~~~~dg~e~~~~~~~ps~~~~~~~~~~~p~~~d~~~~~ 54 (489)
T PF07415_consen 14 PSPHGGPDGYEGSNNSQYPSSFGSSWNSPGPPNYEDYPSNS 54 (489)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccCCCCC
Confidence 35678899999999999999999999999998888877764
No 157
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.52 E-value=5.3e+02 Score=37.19 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=9.3
Q ss_pred CCCCCCCCCceEEeecc
Q 000070 45 ARPTGGGGGGMLVLSRP 61 (2441)
Q Consensus 45 ~~~~~~~gggm~vlsr~ 61 (2441)
+||-+|.|-.+.|.++.
T Consensus 93 AYGQTGSGKSYTMMG~~ 109 (1221)
T KOG0245|consen 93 AYGQTGSGKSYTMMGFQ 109 (1221)
T ss_pred EeccCCCCcceeeeccC
Confidence 34445555556666555
No 158
>PRK13203 ureB urease subunit beta; Reviewed
Probab=20.52 E-value=37 Score=36.55 Aligned_cols=14 Identities=43% Similarity=0.892 Sum_probs=12.5
Q ss_pred CCCCCccccCccCC
Q 000070 2047 PSHFPLYEMNPLLG 2060 (2441)
Q Consensus 2047 ~~~f~~~emn~mlg 2060 (2441)
=|||.|||.|+.|=
T Consensus 37 GSH~HF~E~N~aL~ 50 (102)
T PRK13203 37 GSHYHFFEVNPALS 50 (102)
T ss_pred ccccchhhcCcchh
Confidence 48999999999986
No 159
>PRK11281 hypothetical protein; Provisional
Probab=20.51 E-value=3e+03 Score=30.61 Aligned_cols=151 Identities=11% Similarity=0.109 Sum_probs=0.0
Q ss_pred hHHhhhhhhhccccCCCcchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------
Q 000070 549 GVVKKKKDVLKQTDFHDPVRESFEAELE---RVQKMQEQERQRIIEEQERALELARREEEERLRVAREQE---------- 615 (2441)
Q Consensus 549 alIKKKKEaaKq~E~EEK~REEeEaELE---RRqEeEEEERrReEEEeERErEeaRKEEEEReReEREEE---------- 615 (2441)
..|+.+-+..+..+..+...+...+.++ .-..+-++.+++.++-+++.....++.++..++.++..+
T Consensus 39 ~~iq~~l~~~~~~~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~ 118 (1113)
T PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETL 118 (1113)
T ss_pred HHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Q 000070 616 EQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREE---ERQRIIMEEERRKHAAKQKLLEL---------EERIAKRQ 683 (2441)
Q Consensus 616 ERRRReEEEeRErEEREEKEReEAeRKEEEERKrEEE---EERRREEEEERRREEEErKrrEE---------EEReKReE 683 (2441)
...-..+-|.+-.+.+.+.+..++.......+..... |+.+.+..+-+++..+-+++... +.++.+.+
T Consensus 119 ~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ 198 (1113)
T PRK11281 119 STLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQ 198 (1113)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHH
Q ss_pred HHHHHHhhcchhhhhh
Q 000070 684 AEAAKSDSNSSDIADE 699 (2441)
Q Consensus 684 aErEKrRrqAEekakE 699 (2441)
+|....+.+.+..+.+
T Consensus 199 ae~~~l~~~~~~~~~~ 214 (1113)
T PRK11281 199 AEQALLNAQNDLQRKS 214 (1113)
T ss_pred HHHHHHHHHHHHHHHH
No 160
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=20.41 E-value=5.1e+02 Score=33.01 Aligned_cols=138 Identities=19% Similarity=0.242 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHH
Q 000070 569 ESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWR--------------AEQ 634 (2441)
Q Consensus 569 EEeEaELERRqEeEEEERrReEEEeERErEeaRKEEEEReReEREEEERRRReEEEeRErEER--------------EEK 634 (2441)
++.-.+.-+.+...++++++.++......+.....+....+......+.....+++....+.. ..+
T Consensus 195 qelL~~a~~~E~~~~k~~~~l~~~~~~~~~~~~~~~~~~~e~~e~l~e~~~~~~~~~~d~e~~~e~~~~~~~~~~~~~~~ 274 (387)
T PF07767_consen 195 QELLAKAVEKEKKKEKKREKLERVLTKMFEKMATEEEELEEMEEGLFEEEEDEEEEESDDEEEWEGDEGEYELSINKPKK 274 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHhhhhhhhcccccccccccccccccccccccccccccccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccchhh
Q 000070 635 EQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADEKSSGLAK 706 (2441)
Q Consensus 635 EReEAeRKEEEERKrEEEEERRREEEEERRREEEErKrrEEEEReKReEaErEKrRrqAEekakEKaeqk~k 706 (2441)
.+..-..+.-.++++++++++++++.+.+++..+-.+..+..++..+++++.+.++.........+......
T Consensus 275 ~kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~~i~~l~~i~~ei~~~e~~~~~~~~~r~~~~~~~~~~~~r 346 (387)
T PF07767_consen 275 NKKKTKAQRNKEKRRKEEERKEKERKKEKKKIKQIDRLKEIAKEIEKEEEEREKRRERRKRKKEKKKLKPKR 346 (387)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
No 161
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.13 E-value=3.1e+03 Score=30.58 Aligned_cols=15 Identities=20% Similarity=0.051 Sum_probs=9.8
Q ss_pred CccccccccccCCCc
Q 000070 173 APAEKASVLRGEDFP 187 (2441)
Q Consensus 173 ~~~ek~~vlrgedfp 187 (2441)
.....++.+.=+||.
T Consensus 148 ~~f~~vi~~~Qge~~ 162 (1311)
T TIGR00606 148 AVLNNVIFCHQEDSN 162 (1311)
T ss_pred HHHhhceeeCCcccc
Confidence 455666777777774
Done!