Query 000070
Match_columns 2441
No_of_seqs 320 out of 1469
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 12:38:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 93.8 0.48 1.6E-05 69.5 16.2 157 550-706 1908-2071(3245)
2 3vkg_A Dynein heavy chain, cyt 93.7 0.46 1.6E-05 69.7 15.6 164 546-709 1921-2087(3245)
3 2zuo_A MVP, major vault protei 91.0 8.6 0.00029 50.7 20.4 16 340-355 382-399 (861)
4 2dfs_A Myosin-5A; myosin-V, in 88.6 2.9 9.9E-05 56.5 14.3 20 154-173 241-260 (1080)
5 2dfs_A Myosin-5A; myosin-V, in 88.2 9.9 0.00034 51.6 18.8 20 174-193 356-375 (1080)
6 1i84_S Smooth muscle myosin he 87.5 0.71 2.4E-05 62.4 7.6 20 154-173 268-287 (1184)
7 1i84_S Smooth muscle myosin he 87.2 0.67 2.3E-05 62.7 7.1 21 173-193 381-401 (1184)
8 2zuo_A MVP, major vault protei 86.9 23 0.0008 46.8 20.2 9 150-158 146-154 (861)
9 1f5n_A Interferon-induced guan 85.0 23 0.00077 45.4 18.7 7 56-62 42-48 (592)
10 1f5n_A Interferon-induced guan 83.3 12 0.00043 47.7 15.4 6 324-329 236-241 (592)
11 2b5u_A Colicin E3; high resolu 80.5 53 0.0018 41.4 18.5 13 538-550 278-290 (551)
12 4f61_I Stathmin-like domain R4 80.3 62 0.0021 37.6 17.9 8 549-556 45-52 (240)
13 2b5u_A Colicin E3; high resolu 66.4 1.4E+02 0.0048 37.9 17.3 6 114-119 35-40 (551)
14 2pk2_A Cyclin-T1, protein TAT; 45.8 4.3 0.00015 48.5 0.0 14 42-55 291-304 (358)
15 3iyk_A VP5; icosahedral virus; 37.6 7.5E+02 0.026 31.7 17.2 13 538-550 83-95 (526)
16 2pk2_A Cyclin-T1, protein TAT; 21.6 20 0.00067 43.0 0.0 11 45-55 297-307 (358)
17 3iox_A AGI/II, PA; alpha helix 21.3 1E+03 0.034 30.5 14.5 7 1063-1069 333-339 (497)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.81 E-value=0.48 Score=69.50 Aligned_cols=157 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHhhhhhhhccccCC----CcchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000070 550 VVKKKKDVLKQTDFH----DPVRESFE--AELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEE 623 (2441)
Q Consensus 550 lIKKKKEaaKq~E~E----EK~REEeE--aELERRqEeEEEERrReEEEeERErEeaRKEEEEReReEREEEERRRReEE 623 (2441)
+.+|+++...+++.. +|+.+..+ ++++.+.+.++.+.+++.++.++..++..++.++.++++++.++.+++.++
T Consensus 1908 l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~ 1987 (3245)
T 3vkg_A 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDV 1987 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhccc
Q 000070 624 ETREAVWRAEQEQLEATRKAEEQ-RIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADEKSS 702 (2441)
Q Consensus 624 EeRErEEREEKEReEAeRKEEEE-RKrEEEEERRREEEEERRREEEErKrrEEEEReKReEaErEKrRrqAEekakEKae 702 (2441)
++++.+++++...++-++.+-.+ ++++-++.++..++.+++.++.+++..+.+++.++.+++-++..+++++.+.+...
T Consensus 1988 ~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 1988 RNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp HHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred chhh
Q 000070 703 GLAK 706 (2441)
Q Consensus 703 qk~k 706 (2441)
...+
T Consensus 2068 ~~~k 2071 (3245)
T 3vkg_A 2068 VKNK 2071 (3245)
T ss_dssp HHHH
T ss_pred HHHH
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.68 E-value=0.46 Score=69.72 Aligned_cols=164 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred hhhhHHhhhhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000070 546 GLVGVVKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEET 625 (2441)
Q Consensus 546 sllalIKKKKEaaKq~E~EEK~REEeEaELERRqEeEEEERrReEEEeERErEeaRKEEEEReReEREEEERRRReEEEe 625 (2441)
.+..-+.|-.+...+.+.-.+...+.+.++++..++.++..++...+++..++++...++++++.++++++-..++++-+
T Consensus 1921 rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e 2000 (3245)
T 3vkg_A 1921 HLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAY 2000 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hhhhhccc
Q 000070 626 REAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSS---DIADEKSS 702 (2441)
Q Consensus 626 RErEEREEKEReEAeRKEEEERKrEEEEERRREEEEERRREEEErKrrEEEEReKReEaErEKrRrqAE---ekakEKae 702 (2441)
++-++.+-.+-++++.++.+++.++.+++.++.+++-+..+++-++.+++-++..+++++.+.+.+..+ .++.....
T Consensus 2001 ~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~ 2080 (3245)
T 3vkg_A 2001 ADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLD 2080 (3245)
T ss_dssp HCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred chhhhcc
Q 000070 703 GLAKERD 709 (2441)
Q Consensus 703 qk~kEKE 709 (2441)
....|+.
T Consensus 2081 gL~~Ek~ 2087 (3245)
T 3vkg_A 2081 NLNSERG 2087 (3245)
T ss_dssp HHHHHHH
T ss_pred hhhhccc
No 3
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=90.99 E-value=8.6 Score=50.67 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=9.5
Q ss_pred cccccCc--CCccccccc
Q 000070 340 VFERWGQ--RDSETGKVS 355 (2441)
Q Consensus 340 ~~~~~g~--r~~e~~k~~ 355 (2441)
|-+..|- ||..+|||.
T Consensus 382 LdenEgIYVrd~kTG~VR 399 (861)
T 2zuo_A 382 LDQNEGIYVQDVKTGKVR 399 (861)
T ss_dssp CCTTCEEEEEETTTCCEE
T ss_pred eCCCceEEEEEcCCccEE
Confidence 3344453 777788765
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.59 E-value=2.9 Score=56.51 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=10.9
Q ss_pred cccCCCCccCCCCCCccCCC
Q 000070 154 VYVPPSVRSGTVGPALSSFA 173 (2441)
Q Consensus 154 ~~~~~s~~~~~~~~~~~~~~ 173 (2441)
.|+=--.||-...+.++.||
T Consensus 241 ~yLLEKsRVv~q~~~ERnfH 260 (1080)
T 2dfs_A 241 TYLLEKSRVVFQAEEERNYH 260 (1080)
T ss_dssp EECCCCGGGTCCCTTCCSBH
T ss_pred eEeecCceeeccCCCCCcch
Confidence 35555555555555566655
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.20 E-value=9.9 Score=51.56 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=12.9
Q ss_pred ccccccccccCCCccccccc
Q 000070 174 PAEKASVLRGEDFPSLQAAL 193 (2441)
Q Consensus 174 ~~ek~~vlrgedfpsl~a~l 193 (2441)
.+++|+-|=|=|--.|..+|
T Consensus 356 ~l~~~a~LLgv~~~~L~~~l 375 (1080)
T 2dfs_A 356 PLTIFCDLMGVDYEEMAHWL 375 (1080)
T ss_dssp HHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHh
Confidence 56666666666666666665
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=87.48 E-value=0.71 Score=62.45 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=11.5
Q ss_pred cccCCCCccCCCCCCccCCC
Q 000070 154 VYVPPSVRSGTVGPALSSFA 173 (2441)
Q Consensus 154 ~~~~~s~~~~~~~~~~~~~~ 173 (2441)
.|+=--.||-...+.++.||
T Consensus 268 ~ylLEksRv~~q~~~Ernfh 287 (1184)
T 1i84_S 268 TYLLEKSRAIRQAKDERTFH 287 (1184)
T ss_dssp ECCCCCGGGSCCCTTCCCCT
T ss_pred EeecCCceeeeecCCCCchh
Confidence 45555555555556666666
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=87.15 E-value=0.67 Score=62.68 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=14.8
Q ss_pred CccccccccccCCCccccccc
Q 000070 173 APAEKASVLRGEDFPSLQAAL 193 (2441)
Q Consensus 173 ~~~ek~~vlrgedfpsl~a~l 193 (2441)
..+++|+-|=|=|.-.|..+|
T Consensus 381 ~~~~~~a~lLg~~~~~l~~~l 401 (1184)
T 1i84_S 381 TAAQKVCHLMGINVTDFTRSI 401 (1184)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHh
Confidence 456777777777776676666
No 8
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=86.91 E-value=23 Score=46.82 Aligned_cols=9 Identities=44% Similarity=1.198 Sum_probs=4.6
Q ss_pred CCcccccCC
Q 000070 150 DGVGVYVPP 158 (2441)
Q Consensus 150 ~~~~~~~~~ 158 (2441)
.++|.|.|.
T Consensus 146 ~gPGtY~P~ 154 (861)
T 2zuo_A 146 EGPGTYIPQ 154 (861)
T ss_dssp CSSCCCCSS
T ss_pred ECCceecCC
Confidence 445555554
No 9
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=85.00 E-value=23 Score=45.38 Aligned_cols=7 Identities=14% Similarity=0.168 Sum_probs=3.5
Q ss_pred EEeeccC
Q 000070 56 LVLSRPR 62 (2441)
Q Consensus 56 ~vlsr~r 62 (2441)
+|+++|+
T Consensus 42 aivG~pn 48 (592)
T 1f5n_A 42 AIVGLYR 48 (592)
T ss_dssp EEEEBTT
T ss_pred EEECCCC
Confidence 3555554
No 10
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=83.31 E-value=12 Score=47.65 Aligned_cols=6 Identities=50% Similarity=0.960 Sum_probs=3.0
Q ss_pred CCCCCC
Q 000070 324 FDMPRP 329 (2441)
Q Consensus 324 fd~~~~ 329 (2441)
|-||+|
T Consensus 236 f~lp~P 241 (592)
T 1f5n_A 236 FVFDRP 241 (592)
T ss_dssp EECCCC
T ss_pred EEeCCC
Confidence 445555
No 11
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=80.53 E-value=53 Score=41.44 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=9.7
Q ss_pred CCCCCcchhhhhH
Q 000070 538 DGRDPFSAGLVGV 550 (2441)
Q Consensus 538 ~G~DP~~~sllal 550 (2441)
.+.+|.|.++...
T Consensus 278 Sg~ePlYISvs~i 290 (551)
T 2b5u_A 278 SGHNAVYVSVSDV 290 (551)
T ss_dssp GCCCCEEEEEEEC
T ss_pred CCCCceEEEEeec
Confidence 5899998877543
No 12
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=80.26 E-value=62 Score=37.64 Aligned_cols=8 Identities=25% Similarity=0.372 Sum_probs=3.2
Q ss_pred hHHhhhhh
Q 000070 549 GVVKKKKD 556 (2441)
Q Consensus 549 alIKKKKE 556 (2441)
.-|.+|-+
T Consensus 45 eEIqkKLe 52 (240)
T 4f61_I 45 EEIQKKLE 52 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 13
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=66.40 E-value=1.4e+02 Score=37.91 Aligned_cols=6 Identities=50% Similarity=1.714 Sum_probs=0.0
Q ss_pred CCCCCC
Q 000070 114 SGTGWT 119 (2441)
Q Consensus 114 sg~gwt 119 (2441)
.|.||+
T Consensus 35 ~gsGws 40 (551)
T 2b5u_A 35 DGSGWS 40 (551)
T ss_dssp ------
T ss_pred CCCCcc
Confidence 334443
No 14
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=45.75 E-value=4.3 Score=48.53 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCce
Q 000070 42 SNRARPTGGGGGGM 55 (2441)
Q Consensus 42 ~~~~~~~~~~gggm 55 (2441)
+++|++||||+|||
T Consensus 291 ~~~~~~~~~~~~~~ 304 (358)
T 2pk2_A 291 GSGGGSGGGTSGGV 304 (358)
T ss_dssp --------------
T ss_pred CCCCCCCCCCCCCC
Confidence 34444444444444
No 15
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=37.58 E-value=7.5e+02 Score=31.67 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=7.1
Q ss_pred CCCCCcchhhhhH
Q 000070 538 DGRDPFSAGLVGV 550 (2441)
Q Consensus 538 ~G~DP~~~sllal 550 (2441)
.-.||....-...
T Consensus 83 ~~pDPLsPgE~~~ 95 (526)
T 3iyk_A 83 EIPDPLSPGERGI 95 (526)
T ss_pred CCCCCCCHhHHHH
Confidence 4567775444443
No 16
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=21.56 E-value=20 Score=43.04 Aligned_cols=11 Identities=36% Similarity=0.447 Sum_probs=0.0
Q ss_pred CCCCCCCCCce
Q 000070 45 ARPTGGGGGGM 55 (2441)
Q Consensus 45 ~~~~~~~gggm 55 (2441)
||+|+||+||-
T Consensus 297 ~~~~~~~~~~~ 307 (358)
T 2pk2_A 297 GGGTSGGVPGQ 307 (358)
T ss_dssp -----------
T ss_pred CCCCCCCCCCc
Confidence 33344444443
No 17
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=21.27 E-value=1e+03 Score=30.52 Aligned_cols=7 Identities=29% Similarity=0.026 Sum_probs=3.2
Q ss_pred cccCcCC
Q 000070 1063 IAPASSI 1069 (2441)
Q Consensus 1063 ~~~~s~v 1069 (2441)
|+||||.
T Consensus 333 InGSSV~ 339 (497)
T 3iox_A 333 ISGSSIG 339 (497)
T ss_dssp BTTCSEE
T ss_pred ecCCeEE
Confidence 4455533
Done!