Query 000070
Match_columns 2441
No_of_seqs 320 out of 1469
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 12:39:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000070.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000070hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ejxb_ b.85.3.1 (B:) Urease, 18.3 16 0.0012 35.3 0.9 13 2048-2060 38-50 (101)
2 d1e9ya1 b.85.3.1 (A:106-238) U 15.7 20 0.0015 36.0 0.9 13 2048-2060 38-50 (133)
3 d4ubpb_ b.85.3.1 (B:) Urease, 15.2 21 0.0016 35.4 0.9 13 2048-2060 40-52 (122)
4 d1k47a2 d.58.26.4 (A:195-329) 7.7 72 0.0053 30.6 1.8 14 48-61 98-111 (135)
5 d2ap3a1 a.24.27.1 (A:12-196) H 7.6 6.7E+02 0.049 22.1 11.9 151 550-700 31-181 (185)
6 d1qvra2 c.37.1.20 (A:149-535) 3.6 1.6E+03 0.12 24.4 10.2 110 581-690 253-362 (387)
7 d1oopa_ b.121.4.1 (A:) Swine v 3.6 1.4E+02 0.01 32.7 1.0 41 2107-2155 164-208 (271)
8 d1l2pa_ f.23.21.1 (A:) F1F0 AT 3.0 1.3E+03 0.095 19.7 8.9 60 598-657 2-61 (61)
9 d1v9da_ a.207.1.1 (A:) Diaphan 3.0 5.8E+02 0.042 27.2 5.3 31 647-677 301-331 (332)
10 d1qvra2 c.37.1.20 (A:149-535) 2.9 1.7E+03 0.12 24.2 9.4 110 576-685 253-362 (387)
No 1
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]}
Probab=18.27 E-value=16 Score=35.33 Aligned_cols=13 Identities=46% Similarity=0.777 Sum_probs=11.8
Q ss_pred CCCCccccCccCC
Q 000070 2048 SHFPLYEMNPLLG 2060 (2441)
Q Consensus 2048 ~~f~~~emn~mlg 2060 (2441)
|||.|||.|+.|=
T Consensus 38 SH~HF~E~N~aL~ 50 (101)
T d1ejxb_ 38 SHYHFAEVNPALK 50 (101)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChHHcCcccc
Confidence 8999999999885
No 2
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]}
Probab=15.68 E-value=20 Score=36.01 Aligned_cols=13 Identities=46% Similarity=0.818 Sum_probs=11.9
Q ss_pred CCCCccccCccCC
Q 000070 2048 SHFPLYEMNPLLG 2060 (2441)
Q Consensus 2048 ~~f~~~emn~mlg 2060 (2441)
|||.|||.|+.|=
T Consensus 38 SH~HF~E~N~aL~ 50 (133)
T d1e9ya1 38 SHFHFFEVNRCLD 50 (133)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChhhcCcccc
Confidence 8999999999985
No 3
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}
Probab=15.15 E-value=21 Score=35.43 Aligned_cols=13 Identities=38% Similarity=0.365 Sum_probs=11.9
Q ss_pred CCCCccccCccCC
Q 000070 2048 SHFPLYEMNPLLG 2060 (2441)
Q Consensus 2048 ~~f~~~emn~mlg 2060 (2441)
|||.|||.|+.|-
T Consensus 40 SH~HF~E~N~aL~ 52 (122)
T d4ubpb_ 40 SHIHFVEVNKELL 52 (122)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChhhcCcccc
Confidence 8999999999985
No 4
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=7.66 E-value=72 Score=30.61 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=10.0
Q ss_pred CCCCCCceEEeecc
Q 000070 48 TGGGGGGMLVLSRP 61 (2441)
Q Consensus 48 ~~~~gggm~vlsr~ 61 (2441)
|+||||+|++|.++
T Consensus 98 GaGgGG~~i~l~~~ 111 (135)
T d1k47a2 98 GAGGGDCGIALSFD 111 (135)
T ss_dssp SSCSSSEEEEEECS
T ss_pred cCcCCCeEEEEecC
Confidence 44557888888864
No 5
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=7.63 E-value=6.7e+02 Score=22.12 Aligned_cols=151 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHhhhhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000070 550 VVKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAV 629 (2441)
Q Consensus 550 lIKKKKEaaKq~E~EEK~REEeEaELERRqEeEEEERrReEEEeERErEeaRKEEEEReReEREEEERRRReEEEeRErE 629 (2441)
+.....+...............................................................+.........
T Consensus 31 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (185)
T d2ap3a1 31 IAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKEVKQLDDV 110 (185)
T ss_dssp HHHHHHHHHTTTTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhc
Q 000070 630 WRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADEK 700 (2441)
Q Consensus 630 EREEKEReEAeRKEEEERKrEEEEERRREEEEERRREEEErKrrEEEEReKReEaErEKrRrqAEekakEK 700 (2441)
........+......+.......+........+...................................+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ek 181 (185)
T d2ap3a1 111 LKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEK 181 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 6
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=3.63 E-value=1.6e+03 Score=24.42 Aligned_cols=110 Identities=16% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000070 581 MQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIME 660 (2441)
Q Consensus 581 eEEEERrReEEEeERErEeaRKEEEEReReEREEEERRRReEEEeRErEEREEKEReEAeRKEEEERKrEEEEERRREEE 660 (2441)
.+-++.+++...-+.+++...++............+.+....+++...-+.+.+.......+..+.+.+-+.-+...+..
T Consensus 253 ~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 253 EEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000070 661 EERRKHAAKQKLLELEERIAKRQAEAAKSD 690 (2441)
Q Consensus 661 EERRREEEErKrrEEEEReKReEaErEKrR 690 (2441)
++....++..+..-.+-..-+.+.+...++
T Consensus 333 ~r~gd~e~AaeL~y~~ip~le~el~~l~~~ 362 (387)
T d1qvra2 333 ERQYDLNRAAELRYGELPKLEAEVEALSEK 362 (387)
T ss_dssp TTTTCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHhhchHHHHHHHHHHHHHH
No 7
>d1oopa_ b.121.4.1 (A:) Swine vesicular disease virus coat proteins {Swine vesicular disease virus [TaxId: 12075]}
Probab=3.55 E-value=1.4e+02 Score=32.68 Aligned_cols=41 Identities=32% Similarity=0.592 Sum_probs=0.0
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCcEEEcc---cCccCccccccccccccc-cc
Q 000070 2107 PPAGYTGPFISPTGGIPGVQGPPHMVVYN---HFAPVGQFGQVGLSFMGT-YI 2155 (2441)
Q Consensus 2107 pp~gf~gpfi~p~g~ipgvqgpphm~vyn---hfapvgqfgq~gl~~mg~-yi 2155 (2441)
||+=|.=||++|.-..+-- |+ ||..-|++|+.-+-+||+ +|
T Consensus 164 ~p~r~sIPF~S~~sAY~~f--------YDGy~~f~~~~~YG~~p~N~mGtl~v 208 (271)
T d1oopa_ 164 APPRMSVPFIGIGNAYSMF--------YDGWARFDKQGTYGISTLNNMGTLYM 208 (271)
T ss_dssp CCCEEEECCCCSSSSEESC--------CCBBSSTTSCSCBSGGGTCCCCEEEE
T ss_pred cCceeeeecccccchheee--------eccCCCCCCCCCCccccccCCeeEEE
No 8
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=3.00 E-value=1.3e+03 Score=19.72 Aligned_cols=60 Identities=12% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000070 598 ELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRI 657 (2441)
Q Consensus 598 EeaRKEEEEReReEREEEERRRReEEEeRErEEREEKEReEAeRKEEEERKrEEEEERRR 657 (2441)
++....+.+..........+....-++.+.+...+...-.+..+.+-+..+.+..+..|+
T Consensus 2 e~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eLRk 61 (61)
T d1l2pa_ 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELRK 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 9
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.98 E-value=5.8e+02 Score=27.21 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000070 647 RIAREEERQRIIMEEERRKHAAKQKLLELEE 677 (2441)
Q Consensus 647 RKrEEEEERRREEEEERRREEEErKrrEEEE 677 (2441)
++..++.+++++++++.++.++.+++.++++
T Consensus 301 ~~a~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 331 (332)
T d1v9da_ 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 10
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=2.91 E-value=1.7e+03 Score=24.21 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000070 576 ERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQ 655 (2441)
Q Consensus 576 ERRqEeEEEERrReEEEeERErEeaRKEEEEReReEREEEERRRReEEEeRErEEREEKEReEAeRKEEEERKrEEEEER 655 (2441)
++....+.+-.+...+.....++......+.....+.+..+.+.....-..+-+...+.-....+.+++-+..+.+.+..
T Consensus 253 ~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 253 EEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000070 656 RIIMEEERRKHAAKQKLLELEERIAKRQAE 685 (2441)
Q Consensus 656 RREEEEERRREEEErKrrEEEEReKReEaE 685 (2441)
++...-++..+.......+.+++..+..++
T Consensus 333 ~r~gd~e~AaeL~y~~ip~le~el~~l~~~ 362 (387)
T d1qvra2 333 ERQYDLNRAAELRYGELPKLEAEVEALSEK 362 (387)
T ss_dssp TTTTCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHhhchHHHHHHHHHHHHHH
Done!