Query 000072
Match_columns 2425
No_of_seqs 220 out of 294
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 16:39:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5103 CDC39 Cell division co 100.0 3E-295 7E-300 2688.9 106.4 1921 6-2412 25-1991(2005)
2 KOG1831 Negative regulator of 100.0 5E-290 1E-294 2710.7 92.2 1475 532-2413 82-1578(1591)
3 PF04054 Not1: CCR4-Not comple 100.0 5E-115 1E-119 1069.0 30.8 366 2029-2404 1-379 (379)
4 PF12842 DUF3819: Domain of un 100.0 3.9E-46 8.5E-51 405.7 17.6 145 1308-1452 1-147 (147)
5 KOG1831 Negative regulator of 93.0 0.36 7.9E-06 67.5 10.2 123 1664-1797 917-1039(1591)
6 smart00543 MIF4G Middle domain 91.7 1.3 2.9E-05 51.1 11.6 179 972-1161 2-195 (200)
7 KOG1467 Translation initiation 81.7 4.3 9.3E-05 52.5 8.4 127 1318-1451 241-387 (556)
8 PF02854 MIF4G: MIF4G domain; 80.5 5.1 0.00011 46.3 8.2 108 973-1081 3-117 (209)
9 PF02847 MA3: MA3 domain; Int 42.7 1.6E+02 0.0035 31.3 9.8 85 671-765 3-87 (113)
10 COG5088 SOH1 Rad5p-binding pro 32.1 96 0.0021 32.8 5.5 89 984-1077 15-108 (114)
11 PF08542 Rep_fac_C: Replicatio 31.1 1.2E+02 0.0026 30.9 6.4 60 8-70 4-63 (89)
12 KOG3091 Nuclear pore complex, 29.4 2.9E+02 0.0064 36.9 10.5 27 1347-1373 404-430 (508)
13 cd00686 Terpene_cyclase_cis_tr 26.8 1E+02 0.0022 39.5 5.7 73 2080-2171 113-199 (357)
14 smart00544 MA3 Domain in DAP-5 20.5 2.5E+02 0.0053 30.0 6.6 71 686-765 17-87 (113)
No 1
>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
Probab=100.00 E-value=3.4e-295 Score=2688.94 Aligned_cols=1921 Identities=27% Similarity=0.394 Sum_probs=1496.3
Q ss_pred CCcHHHHHHHHHhhhhhchHHHHHHHHHHHH-hccchhhHHHHhhhcccccCC-CCCCCch---HHHHHHHHHHHhhcCC
Q 000072 6 STVPSQIRFLLQSLNEANADSVFRELCQFIE-YGIEGSTMMLQTCMDHLNLHG-TGLKNPQ---LESVVASVFKYIMDKP 80 (2425)
Q Consensus 6 ~~~~~qi~~Lv~~l~k~n~~~~~~el~qlv~-~G~ea~~~~L~~~l~~~~~~~-~~~k~~~---~~~Ll~~~~~~ll~kp 80 (2425)
+.+-+||.+|++.|++.||++.-+||.|+++ ...+-.+++||.++.--.++- +.+|... --++|-+||+.++.|-
T Consensus 25 sIV~AQI~fLlsTL~eDqydt~~eqIRqlinkna~~vY~~~~rRLiq~nS~~If~tGK~~~~~a~~~~LL~Elks~~~Kr 104 (2005)
T COG5103 25 SIVKAQILFLLSTLREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKKR 104 (2005)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHccCCcHHHHHHHHHHhcccchhhhccCcccchhHHHHHHHHHHHhhhhhh
Confidence 4577899999999999999999999999997 999999999999996443321 2355444 4578889999999865
Q ss_pred CccchhhhhccCc--ccCHHHHHHHHhhcCCCchhHHHHhhhhccCCChHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 000072 81 NFSTVFSQSVKIT--EINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQ 158 (2425)
Q Consensus 81 nf~T~lc~A~~~~--~~~~~fl~~ls~~L~Ls~~qev~~gLAL~~s~n~e~~~~g~~f~~~~l~el~~~~~~~~s~e~lh 158 (2425)
. ..|+.+. ++=++|-=+++ +||.++ .+++....+. | |+.-|-+=+
T Consensus 105 ~-----sD~Is~~dsevFed~~FQ~s------------iGlT~S-------------Ll~n~Fqs~~-N--q~~~~t~qq 151 (2005)
T COG5103 105 F-----SDAISGSDSEVFEDFHFQFS------------IGLTTS-------------LLKNTFQSLL-N--QLSDPTQQQ 151 (2005)
T ss_pred h-----hhHhhcchhhhhcchhhhhh------------hhhhHH-------------HHHHHHHHHH-h--hccchHhhh
Confidence 4 6666664 22223322222 344433 2222222222 1 111000000
Q ss_pred HH----HHHHhcccchhh-hHHHHHHHHhhhcCCCCCCccccCCCCCccccccccccccccccCCCCchHHHHHHhhccC
Q 000072 159 NI----IMFLQRSSDLSK-HVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEM 233 (2425)
Q Consensus 159 ~i----l~~l~~~~gls~-~~~~f~~~l~~~~p~~~~~~~laPll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (2425)
.+ +-.|++ |-.. ...-|.+.+...--+ +.+... +.+.++.+- +.+..+
T Consensus 152 S~d~NDld~lr~--~~Tdydr~~f~q~i~~~Le~-------------------s~~~~~-~~~p~e~~~-~~l~~~---- 204 (2005)
T COG5103 152 SIDKNDLDLLRE--GTTDYDRKIFRQEIKDVLEK-------------------SDPLTA-LFGPREVDR-SFLDDA---- 204 (2005)
T ss_pred hcccchHHHHhc--CCchHHHHHHHHHhHHHHHc-------------------CCchhh-hcCcchhhH-HHHHHH----
Confidence 00 001111 1110 111122221111000 001010 000011100 011111
Q ss_pred cHHHHHHhhCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccCCccCccchhhHhhhccCCCCCCCCCCCCCCHH
Q 000072 234 SMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVD 313 (2425)
Q Consensus 234 ~l~~~i~e~G~~~t~s~~~c~~~L~~~~~l~e~~va~~l~~mart~sgl~~~~~~~~~~~~~~~~~~~~~~~~~~~wn~~ 313 (2425)
..++|+-.+.-.+.|||+.+-.|+.- ++.+.||.-
T Consensus 205 -------------------l~~Il~P~~~~~~~dvar~il~~~~~--------------------------~D~~~w~~v 239 (2005)
T COG5103 205 -------------------LQRILRPRREVVPEDVARAILFMADF--------------------------PDRGEWNLV 239 (2005)
T ss_pred -------------------HHHHhCCCccCCcchHHHHHhhhhhc--------------------------ccccccchH
Confidence 23445534468889999984444422 225679999
Q ss_pred HHHHHHHhhCCCCCHHHHHHhcCCCCCCCCChhhHHHHHHHHhh-hcCCCccccccccCcccCchh-hHHHHHHHhhCCC
Q 000072 314 VLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKY-ACQEPFPLHAVCGSVWKNTEG-QLSFLRYAVASPP 391 (2425)
Q Consensus 314 vlv~alk~~~p~~nW~~V~~~lD~~~f~i~d~~~l~ll~~~~~~-~~~~~fpi~~l~~~~W~N~~~-Qlsfl~~~l~~p~ 391 (2425)
..+.+++..+..+||.+|+.+||.+.|.|+....+..++.+|-. +.+.+||.+.+|. .|||... |+++.-|..+.+.
T Consensus 240 ~~~~a~~s~~e~iNW~~v~s~f~~~~F~i~~l~p~~v~~~c~f~~~~~~~v~~eff~~-~Wkn~~~~~l~i~lhi~s~~~ 318 (2005)
T COG5103 240 AIVGAMKSNLEEINWRDVYSCFLDVNFSIWTLEPLYVIIDCWFYISGIITVPYEFFFK-RWKNERAQILFIRLHIESDEK 318 (2005)
T ss_pred HHHHHHHhhhhhcCHHHHHHHhcCcceeeccCcchHHHHHHHHHHhcCCCccHHHHHH-HhcchhhhhHhhheeeeeccc
Confidence 99999999999999999999999999999977666666665554 4567899999994 9999999 5555556666666
Q ss_pred cccccCc-CccccccccCCCCccccc-cccccccchHHHHHHHHHhhhcCchHHHHHHhhhhhhcChhHHHHHhhcc---
Q 000072 392 EVFTFAH-SARQLPYVDAVPGLKLQS-GQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHI--- 466 (2425)
Q Consensus 392 ~~f~f~~-~~r~~v~~d~~~~~~~~~-~~~~~~W~sldl~e~L~~Lae~~~~~~v~~l~e~p~k~~pe~lllgl~~i--- 466 (2425)
..|+... .+.+.|..+...+.+... -...+++||.+|++++. +++.....-..++| ....||++.+||..+
T Consensus 319 ~~fd~~Nv~~tr~Vs~~~~~~~~~~ny~~~~snlNc~el~Q~~~-l~~~p~i~y~~~lF---lN~~pE~~~a~L~~~~~~ 394 (2005)
T COG5103 319 RTFDYSNVFFTRIVSIEDSRGHRFKNYMGYESNLNCVELFQCIM-LGSLPLIEYIARLF---LNKSPEWCAAGLGFVQPK 394 (2005)
T ss_pred chheecccceeEEEeeecCchHHHHHHHHHhcccCHHHHHHHHH-hccchHHHHHHHHH---hccCHHHHHHHHHHhhhh
Confidence 7788754 344555544433322222 24779999999999994 43332222233466 789999999999654
Q ss_pred --CcchhHHHHHHHHhhhHHhHcC-CCchHHHHHHHhhCChhHHHHHHHhhhcCCccHHHHHHHHHHhhhHHHHhhcCCc
Q 000072 467 --NTAYNLIQYEVSFAVFPMIIKS-TMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPS 543 (2425)
Q Consensus 467 --~~~~~~l~~ell~~lf~~fl~~-~~~~~vi~~lW~~~~~~~~~~l~d~y~~d~~~l~rIldvaqelk~L~~ll~~~p~ 543 (2425)
+-.||+.+.+.....+-+++.| .++++|+..+...+|+++++...-...+|...++|++|+.-|+|.|+.+.|..|.
T Consensus 395 f~~L~~N~v~~s~if~~ll~~f~n~~p~sFvfv~~~rT~p~~~~~~~r~v~~kd~~pv~~~l~~~le~~~l~~V~n~lP~ 474 (2005)
T COG5103 395 FSPLAWNPVQESRIFEELLMGFANGAPNSFVFVVLFRTHPEMMLQKSRLVLAKDGIPVSRLLDIFLEHKMLPLVSNLLPP 474 (2005)
T ss_pred hhhhhcCchHHHHHHHHHHHHHhcCCCCceEEEEEEecCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCchhhhhhcCCH
Confidence 4579999999888877777755 5889999999999999999999888899999999999999999999999999999
Q ss_pred hhHHHHHHHhhcccccCHHHHHHHHhhcCcc-h----HHHHHHHHHHHHhhcccccccCCCCCCCcccccccchhHHHHH
Q 000072 544 PFAIRLAVIASQKELVDLEKWLSINLSTYKD-V----FFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVIL 618 (2425)
Q Consensus 544 ~f~idLa~lAsrre~l~lekWl~~~l~~~~~-~----f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~~tv~~lL 618 (2425)
.|++|+++|++.|+.++|..|+..++....+ + |+...++||+.|+.......+. ...+-+ ++..|+-.+|
T Consensus 475 ~f~~~i~vL~~aR~~l~~~~Wl~~~~~~~~dad~~NVfvv~~~~~l~sk~s~~k~p~~q---~ee~~~--f~~~tvieil 549 (2005)
T COG5103 475 EFCFDIIVLSSARDHLNLGIWLSNNLTTRKDADGLNVFVVSLVQYLDSKVSKHKEPEKQ---KEESVM--FPLNTVIEIL 549 (2005)
T ss_pred HHHHHHHHHHHHHHhcchhhhcccCceeeecCCcccchHHHHHHHHHHHHhhcCChhhh---ccccee--eehhhHHHHH
Confidence 9999999999999999999999999987665 3 9999999999999754321111 111223 3345555555
Q ss_pred HHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCCCC-CC-----CCCCCChhhHHHHHHHHHHHHhccCCCHHHHHH
Q 000072 619 KLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAA-DS-----STSEGYADDIEAEANSYFHQMFSGQLTIEAMVQ 692 (2425)
Q Consensus 619 ~~L~~~~~~~~s~~l~e~l~~v~~~~i~~~PrL~n~~~~-d~-----~~~~~~~~diE~ean~yfqkmY~~eisI~~iv~ 692 (2425)
..+..... +-.+.++.++..|++.||||++.+.+ |+ .+.++++.|||+||.+|||+||+++++|+++|+
T Consensus 550 ~t~~~~V~-----q~~~~~k~~~~~~l~~fprli~~G~~~Ds~v~at~tt~s~~~dIE~E~~sy~q~~y~~~~~I~~~I~ 624 (2005)
T COG5103 550 GTFTKAVE-----QYIRILKPETVVVLNEFPRLIPHGLRRDSIVAATNTTRSKEIDIEEEASSYIQQIYNSQRGIESSIN 624 (2005)
T ss_pred HHhHHHHH-----HHHHhcCcceEehHhhhhhhccCCCCcchhhhccCcccccCccHHHHHHHHHHHHHHhcccHHHHHH
Confidence 54433221 11567788888999999999998754 43 356789999999999999999999999999999
Q ss_pred HHHHhhcCCCcccchhHHHHHHhhhhhhcCCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCCCCCccc
Q 000072 693 MLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMF 772 (2425)
Q Consensus 693 ~L~~~k~S~~~rdqdiFaCMih~LFdEYrff~~YP~~eL~~TA~LFG~lI~~~Lv~~~~L~iALr~VLeAlrkp~~SkMf 772 (2425)
.||+|++|++|||+|+|+|+-|.|||||+||++||+++|++|||||||||+++|+++.+|++|+|||..++++|++||||
T Consensus 625 ~l~~f~~senprd~elfsci~hal~~ey~ff~dyPl~ALaltavLfGslI~f~ll~~~~L~vA~ryI~~~lk~P~~skmf 704 (2005)
T COG5103 625 QLKEFLRSENPRDKELFSCIFHALLEEYGFFYDYPLSALALTAVLFGSLIKFRLLPKPYLRVAIRYIKGSLKHPENSKMF 704 (2005)
T ss_pred HHHHHhhcCCcchHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCCchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhccCCCCCCCCCCCcccccccccccCCCCCccC
Q 000072 773 VFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVSG 852 (2425)
Q Consensus 773 ~FGiqAL~qF~~RL~EwPqyC~~Llqip~L~~t~p~l~~~ie~~l~~~~~~~~~~~~~~~~~~~q~~~~q~~~~~~~~~~ 852 (2425)
+||+|||++|+.||++||+||+.++.||.|+. .|++|+.|-++.. ..+. .+
T Consensus 705 ~Fg~qal~~Fq~kLp~Yp~yc~~vl~ip~l~~-r~~iy~sivem~s----~eNt-------~~----------------- 755 (2005)
T COG5103 705 SFGFQALEVFQEKLPSYPSYCSEVLEIPTLNN-RILIYKSIVEMDS----NENT-------EV----------------- 755 (2005)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhccccccc-chHHHHHHHHHHh----ccCC-------cc-----------------
Confidence 99999999999999999999999999999965 8999998855543 1100 00
Q ss_pred CcccccccchhhhHHhhhcccccccccccccccCCCCCCCCcccCCCCCcccCCCCCchhhhhcccCCCccccccCCCcc
Q 000072 853 SGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFA 932 (2425)
Q Consensus 853 ~~~~~~~~q~~~~~~~qq~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 932 (2425)
++ ++++.|. ++.. .|+
T Consensus 756 -------------------------Ek-------a~p~~pm---~pl~-----------------------------~fv 771 (2005)
T COG5103 756 -------------------------EK-------ANPTHPM---LPLE-----------------------------DFV 771 (2005)
T ss_pred -------------------------cc-------cCCCCcc---cchh-----------------------------hhh
Confidence 00 0111111 0000 000
Q ss_pred CCCCCccccccccccchHHHHHHhhhcCCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHHhh
Q 000072 933 RPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMK 1012 (2425)
Q Consensus 933 ~p~~~~~~~~~~~~~ni~tL~~~~e~~~~~~e~P~e~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~YLV~k 1012 (2425)
+- .-+-+...|--++|+..+|+|.+||++..|+..|++|+|+.|+|.|.+||+.|||.+
T Consensus 772 ~~---------------------~v~c~~n~Eg~~~evV~~iLFaiNNl~~ln~n~ki~~lk~~Ltp~y~~wfs~y~vtq 830 (2005)
T COG5103 772 RL---------------------IVKCDANNEGRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVGWFSIYMVTQ 830 (2005)
T ss_pred ee---------------------EeccccCccccHHHHHHHHHHHhhhHHhhhccchHHHHHHhcCcccccceeeEEEEe
Confidence 00 000012234456777888999999999999999999999999999999999999999
Q ss_pred hcccCCcchHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcccccCCCCh
Q 000072 1013 RASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDP 1092 (2425)
Q Consensus 1013 RasiEPN~H~LYl~fl~~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~ld~ 1092 (2425)
|++.|||||+||.++++.++++.||+.+.+.|.+.++.||+...- +.+|+++|||||+|||+|||||||||+|+++||
T Consensus 831 R~~~e~n~~~ly~kvve~lgS~dly~~~~r~TL~~l~~ll~~~~e--s~~ekk~lKnLgswLG~ItLa~NkpIt~~q~~F 908 (2005)
T COG5103 831 RSTAEENCRRLYGKVVERLGSKDLYLRFSRKTLEFLKMLLDYRCE--SPSEKKVLKNLGSWLGRITLAKNKPITSEQFDF 908 (2005)
T ss_pred eccccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhcccc--ChHHHHHHHHHHHHHhHHHHhhcCccccccccH
Confidence 999999999999999999999999999999999999999997644 889999999999999999999999999999999
Q ss_pred hhHHHHHHhcCceEEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCcccccc
Q 000072 1093 KSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITP 1172 (2425)
Q Consensus 1093 K~LL~eaY~~g~L~~VIPFV~KVLe~~~~S~vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ld~~diep 1172 (2425)
|++|+|||+.||+..|||||||||++++.|+||||||||+||||+||.|||+++++|++||||||+|+||||++++.|||
T Consensus 909 k~~lve~~~~~Ri~~vvpFV~k~L~~as~s~IFkPpNPW~mgILkLL~El~~~a~~~l~lkFEie~Ll~~lnv~~~~ikP 988 (2005)
T COG5103 909 KKFLVESVECRRILFVVPFVSKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLLRHLNVELVPIKP 988 (2005)
T ss_pred HHHHHHHhhcCceEEeehHHHHHHHhcccceEecCCCchHHHHHHHHHHHHhcCcceeehhhhHHHHHHhcceeeccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhh---ccCCCCCCCCCcCCCCCcccCCCCccccCCCCCCCCCCCcCCCCCCCCCcccccccccccccCcCcc
Q 000072 1173 TSLLKDRKRE---IEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTL 1249 (2425)
Q Consensus 1173 s~~L~~r~~~---~~~~~d~~~~~~~~~q~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~l 1249 (2425)
++.++++... +|. ..||. -++ .+.|.+ ..+++||.... .++. .
T Consensus 989 s~~~~n~~V~ks~LEk---------------e~~Ed------vL~-a~~~d~----------~~~~~qyi~~~-sSq~-T 1034 (2005)
T COG5103 989 SKSLGNHLVLKSRLEK---------------ELPED------VLN-AKFPDG----------TDYLAQYIIED-SSQI-T 1034 (2005)
T ss_pred hhhhCcHHHHHHHHhh---------------hchHH------HHh-hhcccc----------chHHHHHHHHh-hhcc-h
Confidence 9999876531 110 11110 000 001100 01233332100 0000 0
Q ss_pred hhHHHHhhccCCCCCCccccccccCCCCCCCcccccccCCCCCCceEEecccccccccchhhhhhHHHHHHHHHHhhhhh
Q 000072 1250 MEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSG 1329 (2425)
Q Consensus 1250 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~~ip~l~~~~~i~~~l~~~~~~p~Lk~iv~~Ai~RAIrEII~P 1329 (2425)
.+| .++. +...| -|.+|++.++|++.+||||++.
T Consensus 1035 vtD-~va~--------------------------------------~~g~P-------~PaiK~~~Qlal~~SVrEI~~a 1068 (2005)
T COG5103 1035 VTD-LVAR--------------------------------------HVGSP-------KPAIKNLTQLALDLSVREICGA 1068 (2005)
T ss_pred HHH-HHHH--------------------------------------HcCCC-------ChHHHHHHHHHHHHHHHHHHHH
Confidence 001 0111 01111 2899999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 000072 1330 IVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAV 1409 (2425)
Q Consensus 1330 VVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTCkEPLr~si~~~Lr~ll~~~~~~~~~~E~~i 1409 (2425)
|||||+.||++||..|++||||||.|+.++..||++||++|||+||+|||+|||++.|.+++|++..++.+....+.+++
T Consensus 1069 VVeks~gIAi~Tt~~l~~KDFa~ev~~s~l~~aar~Mv~~La~~La~vT~~EPlk~~i~~n~rs~a~~l~sv~~~~ae~v 1148 (2005)
T COG5103 1069 VVEKSCGIAIQTTMALFKKDFAMEVEKSMLYVAARNMVVNLAKFLALVTAQEPLKACISGNVRSYAMKLCSVLDFSAEKV 1148 (2005)
T ss_pred HHHHhccchhhHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhccHHHHHHHHhhhhhchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887776667788889
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCCCcCcccccccccCCCCCCCCCCCCCChhHHH
Q 000072 1410 QLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQR 1488 (2425)
Q Consensus 1410 ~~~vnDNldLac~iIEKaA~EkAi~eIde~l~~~~~~RRkhre~-~g~~f~D~~~~~~~~~~lPe~LrlkpgGl~~~Q~~ 1488 (2425)
..++++|++.||.+||||+++|++++|+..|+.++..||+||++ ++.||+||++ +..+++||++|+++-||+||+|++
T Consensus 1149 d~~~~eN~~va~~lIe~a~~~k~~~~i~aei~h~Iv~R~~Hrktt~n~PFvd~aa-a~~slnLps~L~ls~~~~Tpqqf~ 1227 (2005)
T COG5103 1149 DKIAMENQDVACRLIERAGVSKVSESISAEIEHMIVERVRHRKTTPNLPFVDPAA-ANLSLNLPSSLELSIGKATPQQFS 1227 (2005)
T ss_pred HHHHHhchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCccCccc-CccccCCCcccccccCCcCHHHhh
Confidence 99999999999999999999999999999999999999999998 7899999997 555788999999999999999999
Q ss_pred hhhhhhcCCCCCCCCCCCCccccCccCCCCchhhhhcccCCCCCCCCCCCCCCCCCCccccCCCcccCCCCcccCccccc
Q 000072 1489 VYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFL 1568 (2425)
Q Consensus 1489 VYEdF~r~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l 1568 (2425)
+||||.|+|-..- .+|.+.++.-+ -...++ .+++++ |.++. +.++.-
T Consensus 1228 lyE~fD~l~ls~i---~~h~~~~~~n~----------~~Td~a---------dstdal-----~~nl~------nt~e~e 1274 (2005)
T COG5103 1228 LYEDFDRLSLSTI---MGHIEKIAINA----------IDTDSA---------DSTDAL-----NNNLN------NTVENE 1274 (2005)
T ss_pred hhhcccccccccc---ccccchhhhhh----------hcCChh---------hhhhhh-----ccccc------hhhhhH
Confidence 9999999763221 22222211100 000000 000000 00000 000000
Q ss_pred ccchhccccCCCCccccccccccccccchhhhhhhccCCCchhhhhccCCCCCCCCCCCCcccccccccccCCccchHHh
Q 000072 1569 STSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKVRILEPGASSQSLPSTAAPERIGSSILEPSLQTRDA 1648 (2425)
Q Consensus 1569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1648 (2425)
..|+++..+. +.+... ++..+.-.+....+++.+++ +
T Consensus 1275 AnQta~~yq~---------------------n~L~i~--~ql~Ql~~~~Py~~~~~V~a--------------------D 1311 (2005)
T COG5103 1275 ANQTALEYQE---------------------NLLIIK--AQLVQLSKKIPYSSKKNVIA--------------------D 1311 (2005)
T ss_pred HHHHHHHHHH---------------------Hhhhhh--hHHHHhcccCCcchhhcCcc--------------------h
Confidence 0011100000 000000 00000000000111111111 2
Q ss_pred HHHHHHHHHHHHHHhhcCccchhHHHHhhhhHHHHHhhcChhHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHh
Q 000072 1649 LDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVC 1728 (2425)
Q Consensus 1649 Le~~~~~~~~l~~l~~~~~~~~~i~~~~~~v~~~i~~~~~rde~al~~aqkv~~~L~~~~~~~l~~ev~~~~L~~L~~~~ 1728 (2425)
.|+. .+... -+++..++.+|...|.++ |+.++.++|.+++.|+..+.+++++||+.++||+||+++
T Consensus 1312 ~e~~-----~lkE~------~NQ~~t~~~~Il~~Ia~s---d~~~l~c~q~c~~il~~~skSp~~~evls~~lEkic~~S 1377 (2005)
T COG5103 1312 EEHG-----LLKEG------KNQFETVFRRILESIASS---DDKDLECIQLCRYILGHLSKSPSKEEVLSRCLEKICKIS 1377 (2005)
T ss_pred hhhh-----HHHhh------HHHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHhHh
Confidence 2211 11111 135666777777666654 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccccccccCHHHHHHHHHhCCCChhhHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCchh-hHhhHH
Q 000072 1729 KLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRV-VISELH 1807 (2425)
Q Consensus 1729 ~~~~k~vt~wl~~~~d~rk~N~~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~~~~~-~~~df~ 1807 (2425)
-+++|+|.||++|+.|.||||+|+|.+||+++|||..|||.+|++.|.+.. ..++|||+.|++.++..|.++ +..||.
T Consensus 1378 ~kt~k~V~~wl~ysnD~rKfnip~I~slie~nli~~~E~D~~l~r~i~~~~-gnvtdFai~Ll~~~V~~e~pi~~~~dFI 1456 (2005)
T COG5103 1378 FKTQKEVLGWLIYSNDPRKFNIPLIGSLIEHNLINVVEYDQALSRKIPLAD-GNVTDFAIALLASLVTAEVPICTVYDFI 1456 (2005)
T ss_pred HHHhhhhheeeeecCChhhcCcHHHHHHHHhccchhhhHHHHHHhhccccc-cchHHHHHHHHHHHhccCCceeeHHHHH
Confidence 999999999999999999999999999999999999999999999997644 458999999999777777665 559999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhCcccccCCCCCCccccchhhhhhcccccccCcccCccCCCCCCCCCCCCCChH
Q 000072 1808 NLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFP 1887 (2425)
Q Consensus 1808 ~tleaL~~~~~~~~~~~~l~~l~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 1887 (2425)
+|+|.|+.-. .+.++++.+++.+... ..+..| ....+.
T Consensus 1457 ~tLe~la~s~-----d~~vk~f~~~~~~tm~---------------------~~v~kg----------------nKqq~n 1494 (2005)
T COG5103 1457 CTLEMLAGSS-----DPKVKDFFQKISNTMM---------------------HIVAKG----------------NKQQLN 1494 (2005)
T ss_pred HHHHHHhccC-----ChhHHHHHHHHHHhhh---------------------hccccc----------------cccccc
Confidence 9999986432 2456777776643110 000011 113467
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHcCcccCCchhHHHHHHHHHHHHHHhhhccccCCCCCCCCCccccccc
Q 000072 1888 EQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSF 1967 (2425)
Q Consensus 1888 eq~~~lF~EWv~l~~~~~~~~~~~~~Fi~qL~~~giL~~~d~~~~FfR~~~E~sV~~~~~~~~~~~g~~~~~s~~~~~~f 1967 (2425)
||+..+|.|||++.++...+|..-..|+.||+++|+++.+++...|||+.+|.+|..|.+.. +.+.+|
T Consensus 1495 dqi~iVf~ewv~llrn~~~nD~v~~~F~~ql~e~g~~s~~~~~~~ffk~sle~~i~aF~e~~------------pta~~y 1562 (2005)
T COG5103 1495 DQIIIVFSEWVELLRNCRFNDTVPEMFLPQLMERGDYSASLDIRSFFKVSLEHFIRAFHERI------------PTAYCY 1562 (2005)
T ss_pred ceEEEeeHHHHHHHHhcccccccHHHHHHHHHHccCCCchHHHHHHHHhhHHHHHHHHhhcC------------Ccccce
Confidence 99999999999999999999999999999999999999999999999999999999997432 247999
Q ss_pred hhhhHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCchHHHHHHHHHhhcCCCCCCCcchHH
Q 000072 1968 LAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQ 2047 (2425)
Q Consensus 1968 ~~iDA~akLi~~lvk~~~~~~~~~k~~~L~kiL~ivv~vl~~dhe~~~~~FnQRpyfRlfs~LL~el~~~d~~l~~~~~~ 2047 (2425)
..||||+.||+.++++. +..+.++..|++||++++++|+.++|..+++.||+|+||||||++|+||.......++.-..
T Consensus 1563 ~~IDal~sLi~n~l~~e-G~te~T~s~~~~kii~~i~~VFae~h~~~~e~~h~~~fFrLfS~il~e~~dv~~~d~s~fv~ 1641 (2005)
T COG5103 1563 LKIDALPSLIKNRLYEE-GSTEGTVSVLFRKIIKDILFVFAEAHRKRAEFVHNYLFFRLFSRILIETLDVIDEDTSCFVN 1641 (2005)
T ss_pred eeccchHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhhhhhccchhhhh
Confidence 99999999999999996 44456788999999999999999999999999999999999999999998755444455567
Q ss_pred HHHHHHHHhhhcCCCCCCchhHHHhHHhhcccchHhhhcCCCCCChHHHHHHHHHHHHhhhhhhcCCCCCchHHHHHHhH
Q 000072 2048 ILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGT 2127 (2425)
Q Consensus 2048 il~~fa~~l~~LqP~~~PgF~FaWl~LISHR~FmP~lL~~~~~~GW~~~~~LL~~Ll~Fl~~~L~~~~ls~~i~~lYkGt 2127 (2425)
+.+.|-++|..|||.+||||+|||++|+|||+.+|++|+.|+.+||..|..+|+++|||++ ++...++..++++|+|+
T Consensus 1642 ~~Sv~y~~f~alqP~~fPgFtfawl~llSH~~llP~vL~v~Nd~~~d~f~~~lmsflKFlD--~s~~~v~~~~~~ly~Gf 1719 (2005)
T COG5103 1642 NRSVVYSIFEALQPSRFPGFTFAWLELLSHKFLLPKVLLVNNDKINDLFSEGLMSFLKFLD--LSEEGVVLVMEALYCGF 1719 (2005)
T ss_pred hHHHHHHHHHHcCcccCCchHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcc
Confidence 8889999999999999999999999999999999999999999999999999999999998 78778889999999999
Q ss_pred HHHHHHHHhcchhHHHHHhHhhhccCCCCccccccceecccCCCCCCCCCCCCCCCCCCCcCcCCCCccccchHHHHHHh
Q 000072 2128 LRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAK 2207 (2425)
Q Consensus 2128 LRilLvLlHDfPeFL~~yh~~lc~~IP~~ciQLRNlILSA~P~~mrLPDPftp~LkvD~LpEi~~~P~I~~d~~~~L~~~ 2207 (2425)
||+.||++||||-||+++||++...+|+.|+||||+||||||++|.+||||..||||.++|+|+..|.++.|+...| .
T Consensus 1720 lr~iLv~~hD~P~FLit~~yql~~~~P~e~vqlrNm~lSa~Psdlt~p~Pfa~~Lkv~~~P~~k~~p~~f~d~~v~l--e 1797 (2005)
T COG5103 1720 LRTILVYLHDFPGFLITQIYQLFRRNPLECVQLRNMMLSAYPSDLTYPCPFAQGLKVQEYPHIKNFPNQFRDRIVPL--E 1797 (2005)
T ss_pred hheeeeeeccCchHHHHHHHHHhhcCCHHHHHHHHHHHHhccccCcCCCchhcccccccChHhhhhhHHhcccccch--h
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887 4
Q ss_pred hhhHHHHHHhccCCCCcchHHHHHHHccCCccccccCCcc---ccHhHHHHHHHHHHHHHHHhhhccCCcccccCCCCch
Q 000072 2208 QMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTR---YNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSL 2284 (2425)
Q Consensus 2208 ~lk~~vD~yL~~r~~~~~~l~~l~~~L~~~~~~~~~~G~~---yN~~liNAlVLyVG~~Ai~~~~~~~~~~~~~~~~~~~ 2284 (2425)
++++.+| | |.+.++.+..+.+++...-+.....|.. ++-..+-++|.|+|+.++.....
T Consensus 1798 ~~~s~~d--L--e~~~~S~l~~~~s~~~~d~y~~k~t~~~~~~~dn~~~~~~V~h~~~es~~~~~~-------------- 1859 (2005)
T COG5103 1798 GQNSFFD--L--EACLRSALQNRTSVKVTDLYIGKNTPLWVYLIDNLNEMDAVSHTVVESIKFMIE-------------- 1859 (2005)
T ss_pred hcccchh--h--HHHhhhhhhHHHHHHHHHhhccccCceeeeeeccHHHHHHHHHHHhhhHHHHHH--------------
Confidence 7888888 6 5666677777777665544333333322 24567889999999998653211
Q ss_pred hhhh-hhHHHHHHHHHHhccChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccc----chhhHHHHHHHHHHHhcc
Q 000072 2285 TAFL-VSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEAN----QEIIQEQITRVLFERLIV 2359 (2425)
Q Consensus 2285 ~~f~-~s~~~~il~~L~~~ld~EgRY~ll~aiaNQLRYPNsHT~yFS~~lL~LF~~~~----~~~IqEqItRVLLERLIv 2359 (2425)
.|. +|+.+.++..++..+++|.||+++.||+|||||||+||+||||++|++|.+++ +-.||||||||||||+||
T Consensus 1860 -~f~~ks~~~t~l~~~~r~g~~~~rY~ll~ai~~qlRYp~ihTy~fs~vfl~~fkS~~~N~QkL~ikE~m~t~lLeRII~ 1938 (2005)
T COG5103 1860 -RFMHKSEILTMLWIRMRAGGPPKRYFLLTAILAQLRYPEIHTYDFSRVFLKSFKSHGYNPQKLLIKEQMTTVLLERIIC 1938 (2005)
T ss_pred -HHhccccHHHHHHHHHhcCCCchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHc
Confidence 233 35589999999999999999999999999999999999999999999998863 457999999999999999
Q ss_pred CCCCChHHHHHHHHHhhCCCCccccCCcCcchHHHHHHHHHHHHhcCCCCCCC
Q 000072 2360 NRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVD 2412 (2425)
Q Consensus 2360 ~rPHPWGLlITFiELiKNp~Y~Fw~~~Fv~~aPEIe~lF~svarsc~~~~~~~ 2412 (2425)
||||||||+|||+||+||.+||||+||||+..|||.++|+++.+++|.+..+.
T Consensus 1939 NrPH~WGl~i~FTeLlkNeD~Nf~k~Pyikr~~EI~~lfdsL~e~v~a~ssan 1991 (2005)
T COG5103 1939 NRPHPWGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFDSLHEHVMAPSSAN 1991 (2005)
T ss_pred CCCCcchhheeHHHHhcccccchhcCcccccCHHHHHHHHHHHHHhhCccccc
Confidence 99999999999999999999999999999999999999999999999765544
No 2
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=100.00 E-value=5.1e-290 Score=2710.73 Aligned_cols=1475 Identities=37% Similarity=0.594 Sum_probs=1163.2
Q ss_pred hhHHHHhhcCCchhHHHHHHHhhcccccCHHHHHHHHhhcCcchHHHHHHHHHHHHhhcccccccCCCCCCCcccccccc
Q 000072 532 KILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYM 611 (2425)
Q Consensus 532 k~L~~ll~~~p~~f~idLa~lAsrre~l~lekWl~~~l~~~~~~f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~ 611 (2425)
.-++-|.|+.||.++++.+.+|+.++++++..|+.+++.--.+ |..++.-... .+..++.+..+...
T Consensus 82 ~~~~~v~Nm~pn~~~~n~~~la~~~~a~~F~~~l~~~~~~~~~-----~~~~~s~~~~--------~~q~~~~~~~~~~~ 148 (1591)
T KOG1831|consen 82 PGMDIVGNMSPNLEALNIRDLASCFGAVNFSIWLLESLYLMID-----DAVPLSLIIT--------APQEPSFKPWPNER 148 (1591)
T ss_pred CcchhhhhcCcchhhhchHhhhhhcCCCCchhhhcccceeecc-----CCCcccceee--------ccccccCCCChhHH
Confidence 4578899999999999999999999999999999988653221 1222221111 01111111111100
Q ss_pred -hhHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCCCCCC-----CCCCCChhhHHHHHHHHHHHHhccCC
Q 000072 612 -EKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADS-----STSEGYADDIEAEANSYFHQMFSGQL 685 (2425)
Q Consensus 612 -~tv~~lL~~L~~~~~~~~s~~l~e~l~~v~~~~i~~~PrL~n~~~~d~-----~~~~~~~~diE~ean~yfqkmY~~ei 685 (2425)
.++..++..... +++ -.+..-+++.+|. .++.+|++|||+|||+||||||+ .+
T Consensus 149 ~~qi~~l~p~~~~---------------q~q-----rt~s~sa~~~~d~v~~~~~~~~~~s~die~E~~sYfqkiYn-~l 207 (1591)
T KOG1831|consen 149 FAQIYFLLPIGPS---------------QLQ-----RTESVSAPGPHDPVFFARQVSIEFSRDIEFEVNSYFQKIYN-CL 207 (1591)
T ss_pred HHHHHHHccCChh---------------hcc-----ccccccCCCCCCchhhhcccccccChhHHHHHHHHHHHHHH-Hh
Confidence 112222111110 001 1111123333443 35578999999999999999999 99
Q ss_pred CHHHHHHHHHHhhcCCCcccchhHHHHHHhhhhhhcCCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000072 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (2425)
Q Consensus 686 sI~~iv~~L~~~k~S~~~rdqdiFaCMih~LFdEYrff~~YP~~eL~~TA~LFG~lI~~~Lv~~~~L~iALr~VLeAlrk 765 (2425)
+|+++|++|+|||.|.++|||++|+||.|+||||||||++||++||++||+||||||.|+|+++.+||+|+|+|++|+++
T Consensus 208 sI~~vI~lL~rfr~Se~~Rdq~vf~C~~~~lF~EyrFF~dYPe~~L~~Ta~lfGsiI~~~Lls~v~l~la~R~Vl~~l~~ 287 (1591)
T KOG1831|consen 208 SIFQVIDLLQRFRLSELPRDQEVFACAAHNLFEEYRFFRDYPELALATTAVLFGSIIFFVLLSFVELGLALRLVLAALGI 287 (1591)
T ss_pred hHHHHHHHHHhcccccChhhhhHHHHHHhhccccccccccCHHHHHHHHHHhcchhHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhccCCCCCCCCCCCcccccccccccC
Q 000072 766 PADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATS 845 (2425)
Q Consensus 766 p~~SkMf~FGiqAL~qF~~RL~EwPqyC~~Llqip~L~~t~p~l~~~ie~~l~~~~~~~~~~~~~~~~~~~q~~~~q~~~ 845 (2425)
||+||||+||++||.+|+.||.+||+||.+|+.+|++...+|++|++|....- +.. . +.
T Consensus 288 P~~skl~~Fgv~Al~~frskL~~Yp~yC~~Il~~~~~s~~~~~l~~~I~~~~~---san----a---~~----------- 346 (1591)
T KOG1831|consen 288 PPSSKLFIFGVQALLPFRSKLLDYPKYCFDILSIPPFSKFRPHLYDSIWETAT---SAN----A---TT----------- 346 (1591)
T ss_pred CChhHHHHHHHHHHHHHHHHhcchHHHHHHHHhCcchhhccHHHHHHHHhhhh---hcc----C---CC-----------
Confidence 99999999999999999999999999999999999999999999999976321 110 0 00
Q ss_pred CCCCccCCcccccccchhhhHHhhhcccccccccccccccCCCCCCCCcccCC-CCCcccCCCCCchhhhhcccCCCccc
Q 000072 846 GNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIG-QPSSVAPLGDTSSAQKLHNAVSAPAM 924 (2425)
Q Consensus 846 ~~~~~~~~~~~~~~~q~~~~~~~qq~~~g~l~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~ 924 (2425)
....|..+..+ .++.+
T Consensus 347 ------------------------------------------~~s~pv~~~~p~~~~av--------------------- 363 (1591)
T KOG1831|consen 347 ------------------------------------------RKSDPVRSASPYLDSAV--------------------- 363 (1591)
T ss_pred ------------------------------------------cccccchhccccccccc---------------------
Confidence 00001000000 00000
Q ss_pred cccCCCccCCCCCccccccccccchHHHHHHhhhcCCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhH
Q 000072 925 LSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPW 1004 (2425)
Q Consensus 925 ~~~~~~~~~p~~~~~~~~~~~~~ni~tL~~~~e~~~~~~e~P~e~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~W 1004 (2425)
+.+ . + ..+.+.|||+|+|||+|++||+|+.|+.+|++|+|++|+++||+|
T Consensus 364 -s~~---~-~-------------------------P~n~~~~~e~v~dkilF~lNNlsq~N~~qKvdevk~~ltp~y~~W 413 (1591)
T KOG1831|consen 364 -SKH---V-E-------------------------PKNAEGPPEDVVDKILFPLNNLSQLNFNQKVDEVKEILTPEYYPW 413 (1591)
T ss_pred -ccc---C-C-------------------------cccccCCchhhhhhheeeechHhhhhhHHHHHHHHHHcChhhHHH
Confidence 000 0 0 112358999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcccCCcchHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcc
Q 000072 1005 FAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQV 1084 (2425)
Q Consensus 1005 FA~YLV~kRasiEPN~H~LYl~fl~~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkP 1084 (2425)
||+|+|+||||+|+|||+||.+|++.+++. +| -+||++|||||||||.||||||||
T Consensus 414 fs~YiV~qR~S~E~Nf~~LYskFi~ai~n~--------~t----------------~~dk~~LKNLgsWLG~iTl~rNkP 469 (1591)
T KOG1831|consen 414 FSQYIVTQRVSKEINFHELYSKFISAIKNS--------VT----------------ESDKRLLKNLGSWLGEITLGRNKP 469 (1591)
T ss_pred HHHHHhhhhhhcccchHHHHHHHHHHHhCc--------cc----------------hhHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999998 22 179999999999999999999999
Q ss_pred cccCCCChhhHHHHHHhcCceEEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcC
Q 000072 1085 LRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLG 1164 (2425)
Q Consensus 1085 I~~k~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~~~~S~vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ 1164 (2425)
|++.++|||+||+|||.+||+..|+|||||||+.|.+|+|||||||||||||++|+|+|+.||||+|||||||||||+||
T Consensus 470 I~~l~l~~kslLlEaY~sg~ll~VvPFVaKIL~~asksrIFkpPnpW~~gIlklL~ELh~e~d~klnLkFEIEVLlkslN 549 (1591)
T KOG1831|consen 470 IKELDLDFKSLLLEAYGSGRLLPVVPFVAKILEGASKSRIFKPPNPWTMGILKLLAELHQEADLKLNLKFEIEVLLKSLN 549 (1591)
T ss_pred hHHhhhhHHHHHHHHhccCceeecchHHHHHHHhhhhccccCCCCchHHHHHHHHHHhcccccceeeeeeeeeehhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccccchhhccCCCCCCCCCcCCCCCcccCCCCccccCCCCCCCCCCCcCCCCCCCCCccccccccccccc
Q 000072 1165 VDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRL 1244 (2425)
Q Consensus 1165 ld~~dieps~~L~~r~~~~~~~~d~~~~~~~~~q~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 1244 (2425)
++++++||+++++|..+. .+.. ..+.++.. +..+++.. +|
T Consensus 550 ~~l~~le~~~~lnn~~~i-~~~L-----------~~~~~e~h-------~~~~~~~~--------------q~------- 589 (1591)
T KOG1831|consen 550 VILSELEPSETLNNIIRI-KKQL-----------VLMKLETH-------QSLELEDI--------------QQ------- 589 (1591)
T ss_pred chHhhcchhhHHhhHHhH-HHHH-----------ccCChhhc-------cccccCch--------------hc-------
Confidence 999999999999994431 1111 00000000 00000000 00
Q ss_pred CcCcchhHHHHhhccCCCCCCccccccccCCCCCCCccccccc-CCCCCCceEEecccccccccchhhhhhHHHHHHHHH
Q 000072 1245 SSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAI 1323 (2425)
Q Consensus 1245 ~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~-~ip~l~~~~~i~~~l~~~~~~p~Lk~iv~~Ai~RAI 1323 (2425)
..+.+ ...|++++... ...++.+++.+.| ||++|++|+.|++++|
T Consensus 590 -------------------------~~~~~--~~~fa~~~~n~~t~~~~i~~l~~~~-------~P~~Kh~~~~Aleqsv 635 (1591)
T KOG1831|consen 590 -------------------------VTLGN--TIAFAYDARNVSTATEVIKQLDLRP-------HPDIKHRVQEALEQSV 635 (1591)
T ss_pred -------------------------ccccC--CccceecccccchhhhhhhhccCCC-------CccHHHHHHHHHHHHH
Confidence 00000 11144444321 1223334444444 8999999999999999
Q ss_pred HhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHH
Q 000072 1324 KEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASE 1403 (2425)
Q Consensus 1324 rEII~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTCkEPLr~si~~~Lr~ll~~~~~~~~ 1403 (2425)
+|||.||||||+.||++||+.||+||||+|+||+|||.||+.|||+||++||++||||||+++|+++|+....++.....
T Consensus 636 ~eii~~Vv~rs~~IA~ttTe~lirKDFA~e~~es~l~~Aa~~M~r~la~~lAmiTcreplk~am~~nl~~~~~~~l~~~~ 715 (1591)
T KOG1831|consen 636 VEIIEPVVERSSGIASTTTESLIRKDFALERDESRLRLAASQMVRELAAGLAMITCREPLKVAMSSNLVLAALSLLSLMA 715 (1591)
T ss_pred HHHHHHHHHHhhceeehhHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777666678
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCCCcCcccccccccCCCCCCCCCCCCC
Q 000072 1404 LLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHL 1482 (2425)
Q Consensus 1404 ~~E~~i~~~vnDNldLac~iIEKaA~EkAi~eIde~l~~~~~~RRkhre~-~g~~f~D~~~~~~~~~~lPe~LrlkpgGl 1482 (2425)
.+++++..+++||++++|++|||+|+|||++|||.+|++++..|+.||++ ++.||+|+....+. ..|||++|+++||+
T Consensus 716 ai~~a~~t~~~dNv~l~~~~Iek~a~eka~~dI~~~L~q~~~~Rv~~k~~~~~~~fvD~~~~~~~-~~LP~~vr~~~~~~ 794 (1591)
T KOG1831|consen 716 AIARAADTLQSDNVELVVKFIEKTAIEKATQDIDSRLEQDICGRVFHKENPEVMPFVDLLSAAYS-CTLPEVVRLKIGGL 794 (1591)
T ss_pred HHHHHHHHHHhhchhhHhhhhHHHHHHHHHHHHHHHHHHhhHhheecccCCccccchhhhhhhhh-ccCcHhhhcccCCC
Confidence 99999999999999999999999999999999999999999999999997 68999999876664 44999999999999
Q ss_pred ChhHHHhhhhhhc-CCCCC-CCCCCCCccccCccCCCCchhhhhcccCCCCCCCCCCCCCCCCCCccccCCCcccCCCCc
Q 000072 1483 SVSQQRVYEDFVR-LPWQN-QSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTT 1560 (2425)
Q Consensus 1483 ~~~Q~~VYEdF~r-~p~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 1560 (2425)
+|+|++|||+|+| +|+.. .++...+.. | .+++.++.+..
T Consensus 795 ~~~l~~vYe~F~k~i~~~~~~s~~~~la~----------------~----------------------~~~~~dlt~~~- 835 (1591)
T KOG1831|consen 795 TPQLFRVYEEFPKPIPGFLGNSSRKDLAE----------------Y----------------------ITESSDLTQPH- 835 (1591)
T ss_pred CHHHHHHHHHcccccccccccCCCccccc----------------c----------------------cCCCccccchh-
Confidence 9999999999997 44311 000000000 0 11111111000
Q ss_pred ccCcccccccchhccccCCCCccccccccccccccchhhhhhhccCCCchhhhhccCCCCCCCCCCCCcccccccccccC
Q 000072 1561 ESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKVRILEPGASSQSLPSTAAPERIGSSILE 1640 (2425)
Q Consensus 1561 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1640 (2425)
..+..+... ..++.++. ++. ++...+... .+. .+...+...++.+
T Consensus 836 ------~~s~~~~lv------~~ei~~~~-~~~---a~~~~i~~~-----------~l~--~~a~s~~~~m~~v------ 880 (1591)
T KOG1831|consen 836 ------VISNALDLV------VREICGAI-VEK---ACQTAIQTG-----------MLQ--FKAQSVEKLMEEV------ 880 (1591)
T ss_pred ------hhhHHHHHH------HHHHHHHH-HHH---HHHHHHHhh-----------hhh--hhhhcchhhHHhc------
Confidence 000000000 00000000 000 000000000 000 0000000111111
Q ss_pred CccchHHhHHHHHHHHHHHHHHhhcCccchhHHHHhhhhHHHHHhhcChhHHHHHHHH--HHHHHHhhccCCcchHHHHH
Q 000072 1641 PSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQ--KVFKGLYENASNNLHFSAHL 1718 (2425)
Q Consensus 1641 ~~l~~~~~Le~~~~~~~~l~~l~~~~~~~~~i~~~~~~v~~~i~~~~~rde~al~~aq--kv~~~L~~~~~~~l~~ev~~ 1718 (2425)
+.++..............++. ..-.+-.+.+ +.+...+ ..+--.+++.
T Consensus 881 --------------------------~~~~~~~~~~~~~~~~~ar~i-~hli~~~V~~~~~~l~~~~---~~~~I~~i~m 930 (1591)
T KOG1831|consen 881 --------------------------PARNMVVNLVNSLLLLVARSI-EHLISGLVSYFMKNLELDF---STEKIFKIIM 930 (1591)
T ss_pred --------------------------cchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh---cchhHHHHHH
Confidence 111111111111111111000 0000111122 1111111 1122345677
Q ss_pred HHHHHHHHHhHH-HHHHHHhhhhccccccccCHHHHHHHHHhCCCChhhHHHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q 000072 1719 AILAAIRDVCKL-VVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTD 1797 (2425)
Q Consensus 1719 ~~L~~L~~~~~~-~~k~vt~wl~~~~d~rk~N~~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~ 1797 (2425)
.+|+-+|....+ ..+.|+-.+..+++++|||++.+..|++.+|++..++|.+++++||+|.|..++.|+++|++.....
T Consensus 931 ~iL~~ic~~~qk~~~~~vs~a~s~~~~~~e~n~~~~~~L~~~~l~~~~~vd~~l~~amDs~~n~~vi~f~iell~~~~~~ 1010 (1591)
T KOG1831|consen 931 EILDNICRFIQKAGVRKVSEAISSSRSSLEYNIEKAEHLILSLLLDSGHVDKHLAKAMDSGGNQEVIAFLIELLRIAYGG 1010 (1591)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhchHHHHhhHHHHHHHHHHhccChhhHHHHHHHHhccCCChHHHHHHHHHHHHhccC
Confidence 788888887744 5556888888999999999999999999999999999999999999999999999999999988888
Q ss_pred CchhhH---hhHHHHHHHHHHHHcCCCCc----hHHHHHHHHHhCcccccCCCCCCccccchhhhhhcccccccCcccCc
Q 000072 1798 ESRVVI---SELHNLVDALAKLAAKPGSP----ESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANR 1870 (2425)
Q Consensus 1798 ~~~~~~---~df~~tleaL~~~~~~~~~~----~~l~~l~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1870 (2425)
+.++.. ..|..|.|.+.|+.+.-.+. +...+..+..-+ ....++.++
T Consensus 1011 dnvi~~~~~~~~~~t~E~~~ri~q~v~s~~~~~g~~~~~~~~~v~------------------------~~~k~~s~~-- 1064 (1591)
T KOG1831|consen 1011 DNVIADEWKNLFKETKEELFRILQSVESSEDKSGECASLCDYIVE------------------------HAIKSGSSA-- 1064 (1591)
T ss_pred cchhhhhhhhhhhhHHHHHHHHHHHHhcccccchhhhhHHHHHHH------------------------hccCCCCch--
Confidence 876433 46778999998865321110 111111110000 000010000
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHcCcccCCchhHHHHHHHHHHHHHHhhhccc
Q 000072 1871 EDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEV 1950 (2425)
Q Consensus 1871 ~~~~~~~~~~~d~~~~~eq~~~lF~EWv~l~~~~~~~~~~~~~Fi~qL~~~giL~~~d~~~~FfR~~~E~sV~~~~~~~~ 1950 (2425)
..-....+|+.++.||++.+|.|||++|+.+..++....+||+||+++|||++||..++|||.|+|+||+.++....
T Consensus 1065 ---~~m~~~~~~~~~lt~K~~~v~~~Wv~L~~~~~~~~~s~~~fi~ql~~~GVls~dd~ltqFfr~~~el~~~i~~~a~~ 1141 (1591)
T KOG1831|consen 1065 ---DFMFRRMDDKQKLTEKTEIVFLEWVILLNDSRKNDESLAAFIQQLNEIGVLSTDDLLTQFFRADLELCVVIFLEASL 1141 (1591)
T ss_pred ---hHHHHhcCcchhhhhHHHHHHHHHHHHHhccccchHHHHHHHHHHHHcCcccchHHHHHHHHhhhhhhHHHHHHhcc
Confidence 00112346778999999999999999999999999999999999999999999999999999999999999995431
Q ss_pred cCCCCCCCCCccccccc-hhhhHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCchHHHHHH
Q 000072 1951 INPGTLQSPQQSQSLSF-LAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFIN 2029 (2425)
Q Consensus 1951 ~~~g~~~~~s~~~~~~f-~~iDA~akLi~~lvk~~~~~~~~~k~~~L~kiL~ivv~vl~~dhe~~~~~FnQRpyfRlfs~ 2029 (2425)
. ....+ .+++|+.+....|.+|.. +++|.+|++||+++|++|+++||+++|+.|||+||||+|+|
T Consensus 1142 ~-----------~a~~~i~tv~~~~~~l~~l~~f~d---~~tk~dl~~KI~~livgv~akdHs~~~e~f~~~~y~Rlf~~ 1207 (1591)
T KOG1831|consen 1142 I-----------TALVQICTVYAFICTLEMLDGFVD---LPTKIDLFNKILNLIVGVFAKDHSERGEYFNQCPYFRLFSM 1207 (1591)
T ss_pred c-----------ccchhhhhHHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHhcchHHhhhhHhhCcHhHHHHH
Confidence 0 12222 578888888888888863 26899999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCcchHHHHHHHHHHhhhcCCCCCCchhHHHhHHhhcccchHhhhcCCCCCChHHHHHHHHHHHHhhhh
Q 000072 2030 WLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEP 2109 (2425)
Q Consensus 2030 LL~el~~~d~~l~~~~~~il~~fa~~l~~LqP~~~PgF~FaWl~LISHR~FmP~lL~~~~~~GW~~~~~LL~~Ll~Fl~~ 2109 (2425)
+|.||..++.+++.+.++|+++|+++||.|||.++|||+||||+|||||+|+|+||..+++|||+.|++|+++|||||+|
T Consensus 1208 ll~E~~~~~~~le~~~~~i~SaF~~tfhalqp~~~Pgf~fawL~lishr~li~~~L~~~~~k~~~~~~~llislfkfL~~ 1287 (1591)
T KOG1831|consen 1208 LLPELMTADSVLEPISLDILSAFKNTFHALQPRRFPGFAFAWLELISHRGLIPRMLAETNQKGWPLYAQLLISLFKFLAP 1287 (1591)
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHHHhCcccCcccceeeeecccchhHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCchHHHHHHhHHHHHHHHHhcchhHHHHHhHhhhccCCCCccccccceecccCCCCCCCCCCCCCCCCCCCcC
Q 000072 2110 FLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPE 2189 (2425)
Q Consensus 2110 ~L~~~~ls~~i~~lYkGtLRilLvLlHDfPeFL~~yh~~lc~~IP~~ciQLRNlILSA~P~~mrLPDPftp~LkvD~LpE 2189 (2425)
|+||.+++++++.+|||||||+|||+||||||||+|||.|||.|||+|+||||+|||||||+|++||||++|||||+|||
T Consensus 1288 ylrn~~~~k~~~~lykgTLrVilvllhDfp~fl~~~hy~~~~~iPp~cvqlrniilsafp~~m~lpdpf~~~lkve~lpe 1367 (1591)
T KOG1831|consen 1288 YLRNYELFKPVQLLYKGTLRVILVLLHDFPEFLCEYHYGLCDTIPPNCVQLRNIILSAFPSNMRLPDPFAVNLKVEMLPE 1367 (1591)
T ss_pred HHhhhhhhhHHHHHHHcchHHhhcccccchHHHHHhhhhccCCCCcHHHHHHHHHHHhccccCcCCCccccccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccchHHHHHHhhhhHHHHHHhccCCCCcchHHHHHHHccCCccccccCCccccHhHHHHHHHHHHHHHHHhhh
Q 000072 2190 IRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQ 2269 (2425)
Q Consensus 2190 i~~~P~I~~d~~~~L~~~~lk~~vD~yL~~r~~~~~~l~~l~~~L~~~~~~~~~~G~~yN~~liNAlVLyVG~~Ai~~~~ 2269 (2425)
+..+|+|+++++. +.+...++++|.|+++|.+. +|+..++.-++... .+|++||..+|||+|+|||++||.+++
T Consensus 1368 ~~~ap~i~~~~~~-i~~~~~~~dl~a~l~s~~~~-t~l~~~~~~~~~~~----~~~~~~~~~~~naiVlyvG~~ai~~~~ 1441 (1591)
T KOG1831|consen 1368 GFYAPRILYSITQ-IMPSNFRKDLDARLKSSSPV-TFLSCLPQLLQVIK----EPGTRYNNQLINAIVLYVGIQAIAHLR 1441 (1591)
T ss_pred hhcCchhcCCHHH-hcccccCCCHHHHhhccccH-hHHHHhhHHHHHhc----CccccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 88889999999999999886 99999998877643 479999999999999999999999999
Q ss_pred ccCCcccccCCCCchhhhhhhHHHHHHHHHHhccChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhcccchhhHHHH
Q 000072 2270 TRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQI 2349 (2425)
Q Consensus 2270 ~~~~~~~~~~~~~~~~~f~~s~~~~il~~L~~~ld~EgRY~ll~aiaNQLRYPNsHT~yFS~~lL~LF~~~~~~~IqEqI 2349 (2425)
.+....+++ +++|+++|+||++|+.+||+||||++++||||||||||+|||||||++||||.+++...|||||
T Consensus 1442 ~~~~~~~~~-------~it~s~~~~i~~nL~~nld~e~ry~~l~aianqlryp~~ht~~~s~~~l~lfk~~~~~pike~i 1514 (1591)
T KOG1831|consen 1442 RKSQNPSTS-------TITHSAYMDIFQNLIVNLDTEGRYLLLNAIANQLRYPNSHTYYFSCVFLYLFKRAGNNPIKEQI 1514 (1591)
T ss_pred hccCCCccc-------ccccCchhhHHHHHHHhcchhhhHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCCCchHHHH
Confidence 887666554 3678999999999999999999999999999999999999999999999999999888899999
Q ss_pred HHHHHHHhccCCCCChHHHHHHHHHhhCCCCccccCCcCcchHHHHHHHHHHHHhcCCCCCCCc
Q 000072 2350 TRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDD 2413 (2425)
Q Consensus 2350 tRVLLERLIv~rPHPWGLlITFiELiKNp~Y~Fw~~~Fv~~aPEIe~lF~svarsc~~~~~~~~ 2413 (2425)
||+++||+||||||||||+|||+||||||.||||+||||+|||||.+||++|+++|+....+..
T Consensus 1515 ~~~~lerii~nrPHpWGllitF~eLikN~~YNfw~~~fv~~~pEI~rlfqsl~~~~~~~s~s~~ 1578 (1591)
T KOG1831|consen 1515 TRVLLERIIVNRPHPWGLLITFTELIKNPDYNFWDHPFVQCAPEIKRLFQSLAKYCKAYSTSEQ 1578 (1591)
T ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHcCCCcccccCcccccCHHHHHHHHHHHHHhhCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999986554444
No 3
>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [].
Probab=100.00 E-value=4.6e-115 Score=1069.00 Aligned_cols=366 Identities=59% Similarity=1.048 Sum_probs=341.9
Q ss_pred HHHHhhcCCCC--CCCcch--HHHHHHHHHHhhhcCCCCCCchhHHHhHHhhcccchHhhhc-CCCCCChHHHHHHHHHH
Q 000072 2029 NWLLDMSSLDP--VADGSN--FQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLI-GNGQKGWPYIQRLLVNL 2103 (2425)
Q Consensus 2029 ~LL~el~~~d~--~l~~~~--~~il~~fa~~l~~LqP~~~PgF~FaWl~LISHR~FmP~lL~-~~~~~GW~~~~~LL~~L 2103 (2425)
||||||+..+. .++..+ .+++.+||++||.|||.++|||+|||++|||||+|||+||. .++++||+.|++||+++
T Consensus 1 ~ll~e~~~~~~~~~~~~~~~~~~~~~~fa~~l~~lqP~~~PgF~faWl~LisHR~Flp~lL~~~~~~~gW~~~~~Ll~~l 80 (379)
T PF04054_consen 1 SLLCELHAISIEDSLESEELDRQFLLAFASFLHSLQPLYFPGFAFAWLELISHRMFLPKLLRNSPDQKGWPAYTRLLIDL 80 (379)
T ss_pred CeeeecccCcccccchhhhhHHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Confidence 58999995332 344444 59999999999999999999999999999999999999999 88999999999999999
Q ss_pred HHhhhhhhcCCCCCchHHHHHHhHHHHHHHHHhcchhHHHHHhHhhhccCCCCccccccceecccCCCCCCCCCCCCCCC
Q 000072 2104 LQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLK 2183 (2425)
Q Consensus 2104 l~Fl~~~L~~~~ls~~i~~lYkGtLRilLvLlHDfPeFL~~yh~~lc~~IP~~ciQLRNlILSA~P~~mrLPDPftp~Lk 2183 (2425)
|+|+++|+|+.+++++++++||||||++|||+||||||||+||++||++||+||+||||+||||+|++|+|||||+||+|
T Consensus 81 l~Fl~~~l~~~~~~~~~~~lYkg~LRillvL~HDfPeFL~~~h~~lc~~iP~~ciQLrNiILsA~P~~~~lpDPf~~~lk 160 (379)
T PF04054_consen 81 LKFLGPYLKNEELSDAIKVLYKGTLRILLVLLHDFPEFLCEYHFSLCDVIPPHCIQLRNIILSAFPRNMKLPDPFTPGLK 160 (379)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhcChhHHHHHHHHHHhCCCCCCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcCCCCccccchHHHHHHhhhhHHHHHHhccCCCCcchHHHHHHHccCCcccccc----CCccccHhHHHHHHHH
Q 000072 2184 IDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAAS----AGTRYNVPLINSLVLY 2259 (2425)
Q Consensus 2184 vD~LpEi~~~P~I~~d~~~~L~~~~lk~~vD~yL~~r~~~~~~l~~l~~~L~~~~~~~~~----~G~~yN~~liNAlVLy 2259 (2425)
||++|||+++|.|++|++..|++.|||+.||+||++|+ +.+++++|+++|+.++.+... .|++||+++|||+|+|
T Consensus 161 vd~l~e~~~~P~i~~d~~~~L~~~~lk~~vd~~l~~~~-~~~~l~~i~~~l~~~~~~~~~~~g~~~~~~n~~linalVly 239 (379)
T PF04054_consen 161 VDRLPEIKQAPKILSDPTEDLQQAGLKKPVDQYLRNGP-SESLLAQILHKLQLPEPEETNGFGFDGVKYNVKLINALVLY 239 (379)
T ss_pred chhchhhccCCccccchhhhcchHHHHHHHHHHHHhCC-CHHHHHHHHHHhcCCccccccccCCCCccccHHHHHHHHHH
Confidence 99999999999999999999999999999999998744 459999999999998876542 5699999999999999
Q ss_pred HHHHHHHhhhccCCcccccCCCCchhhhhhhHHHHHHHHHHhccChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhh-
Q 000072 2260 VGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYA- 2338 (2425)
Q Consensus 2260 VG~~Ai~~~~~~~~~~~~~~~~~~~~~f~~s~~~~il~~L~~~ld~EgRY~ll~aiaNQLRYPNsHT~yFS~~lL~LF~- 2338 (2425)
||++|+.+.+.++..+.+.+ +++++++|++|++++|+||||++++||||||||||+|||||||+||+||+
T Consensus 240 vg~~a~~~~~~~~~~~~f~~---------~s~~~~ll~~Li~~ld~E~RY~ll~aiaNqLRYPN~HT~~Fs~~lL~lF~~ 310 (379)
T PF04054_consen 240 VGIQAVAEAQKKSSAPSFNT---------KSPHVTLLSKLIHELDPEGRYYLLSAIANQLRYPNSHTHFFSCVLLNLFSS 310 (379)
T ss_pred HhHHHHHHHhccCCCccccc---------cChHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 99999987666555444443 26799999999999999999999999999999999999999999999999
Q ss_pred ---cccchhhHHHHHHHHHHHhccCCCCChHHHHHHHHHhhCCCCccccCCcCcchHHHHHHHHHHHHh
Q 000072 2339 ---EANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARS 2404 (2425)
Q Consensus 2339 ---~~~~~~IqEqItRVLLERLIv~rPHPWGLlITFiELiKNp~Y~Fw~~~Fv~~aPEIe~lF~svars 2404 (2425)
+.++++||||||||||||+||+|||||||+|||+||+|||+|+||++|||||+||||++|++|+||
T Consensus 311 ~~~~~~~~~IqEqItRVLLERliv~rPHPWGllitfiELikN~~y~f~~~pFik~~pEI~~~f~~~~~~ 379 (379)
T PF04054_consen 311 DMNDPNDEDIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPKYNFWELPFIKCAPEIEKLFESLARH 379 (379)
T ss_pred CCCccchhhhHHHHHHHHHHHHhcCCCCCccHHHHHHHHHhCccCCcccCcccccCHHHHHHHHHHhcC
Confidence 667899999999999999999999999999999999999999999999999999999999999986
No 4
>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. This entry represents a domain of unknown function found in the Not1 subunit of the CCR4-Not complex.
Probab=100.00 E-value=3.9e-46 Score=405.71 Aligned_cols=145 Identities=56% Similarity=0.809 Sum_probs=140.2
Q ss_pred chhhhhhHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHH
Q 000072 1308 HLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSI 1387 (2425)
Q Consensus 1308 ~p~Lk~iv~~Ai~RAIrEII~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTCkEPLr~si 1387 (2425)
||+||++|+.|+||||||||.|||||||+||++||++||+||||+||||+|||+|||+||++||||||+|||||||+.+|
T Consensus 1 ~p~lk~~v~~Al~rai~Eii~pvveRsv~IA~~Tt~~LV~KDFa~E~De~~~r~aa~~Mv~~LA~sLalvTcrepL~~~i 80 (147)
T PF12842_consen 1 HPQLKRIVQNALDRAIREIISPVVERSVTIASITTEELVKKDFATEPDENKMRRAAHNMVRSLAGSLALVTCREPLRESI 80 (147)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-CC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000072 1388 SSQLRNSLQGL-TI-ASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHRE 1452 (2425)
Q Consensus 1388 ~~~Lr~ll~~~-~~-~~~~~E~~i~~~vnDNldLac~iIEKaA~EkAi~eIde~l~~~~~~RRkhre 1452 (2425)
.+|||+++++. +. .++++|+++++++|||+||||++|||+|+|||++|||++|+++|+.||+|||
T Consensus 81 ~~~l~~~l~~~~~~~~~~~~e~~i~~~~~dNlel~~~~Iek~a~eka~~~id~~l~~~~~~R~~~re 147 (147)
T PF12842_consen 81 QNNLRSLLSQLNGSTEQELPEQAIQQIVNDNLELACAFIEKAAMEKAIKEIDERLEPEIELRRRHRE 147 (147)
T ss_pred HHHHHHHHHhhcCCchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999843 33 4689999999999999999999999999999999999999999999999996
No 5
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=93.02 E-value=0.36 Score=67.47 Aligned_cols=123 Identities=15% Similarity=0.081 Sum_probs=99.8
Q ss_pred hcCccchhHHHHhhhhHHHHHhhcChhHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHhHHHHHHHHhhhhccc
Q 000072 1664 GNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSD 1743 (2425)
Q Consensus 1664 ~~~~~~~~i~~~~~~v~~~i~~~~~rde~al~~aqkv~~~L~~~~~~~l~~ev~~~~L~~L~~~~~~~~k~vt~wl~~~~ 1743 (2425)
+.+.+...|..++.++.+.|.+..+++... +|..+. ++...++|+.+..++.||...-...+++.+|++++-
T Consensus 917 ~~~~~~~~I~~i~m~iL~~ic~~~qk~~~~-----~vs~a~---s~~~~~~e~n~~~~~~L~~~~l~~~~~vd~~l~~am 988 (1591)
T KOG1831|consen 917 ELDFSTEKIFKIIMEILDNICRFIQKAGVR-----KVSEAI---SSSRSSLEYNIEKAEHLILSLLLDSGHVDKHLAKAM 988 (1591)
T ss_pred HHhhcchhHHHHHHHHHHHHHHhccHHHHH-----HHHHHH---HhchHHHHhhHHHHHHHHHHhccChhhHHHHHHHHh
Confidence 345667778888888888888777776533 333333 345678999999999999988788999999999999
Q ss_pred cccccCHHHHHHHHHhCCCChhhHHHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q 000072 1744 EERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTD 1797 (2425)
Q Consensus 1744 d~rk~N~~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~ 1797 (2425)
|.+ +|.||+..|+.. |.....-|..+|..++ ++.+...|+++++.+....+
T Consensus 989 Ds~-~n~~vi~f~iel-l~~~~~~dnvi~~~~~-~~~~~t~E~~~ri~q~v~s~ 1039 (1591)
T KOG1831|consen 989 DSG-GNQEVIAFLIEL-LRIAYGGDNVIADEWK-NLFKETKEELFRILQSVESS 1039 (1591)
T ss_pred ccC-CChHHHHHHHHH-HHHhccCcchhhhhhh-hhhhhHHHHHHHHHHHHhcc
Confidence 999 999999999999 9999999999999998 56678899999966655444
No 6
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=91.68 E-value=1.3 Score=51.13 Aligned_cols=179 Identities=21% Similarity=0.269 Sum_probs=119.8
Q ss_pred HhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHH---HHhhhcccCCcchHHHHHHHHHhCC--hhHHHHHHHHHHH
Q 000072 972 DKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQY---MVMKRASIEPNFHDLYLKFLDKVNS--KALNREIVQATYE 1046 (2425)
Q Consensus 972 DKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~Y---LV~kRasiEPN~H~LYl~fl~~l~~--~~L~~~Vl~eTy~ 1046 (2425)
.+|.-++|-+|++|++.-++|+.+..... +....+ .+.+++-.+|+|-.+|..++..++. +.+-+.+++.++.
T Consensus 2 ~~v~~~lnkLs~~n~~~~~~~l~~~~~~~--~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~~~~~~f~~~ll~~~~~ 79 (200)
T smart00543 2 KKVKGLINKLSPSNFESIIKELLKLNNSD--KNLRKYILELIFEKAVEEPNFIPAYARLCALLNAKNPDFGSLLLERLQE 79 (200)
T ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999888653 344444 3567899999999999999999987 5677888888887
Q ss_pred HHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcccccCCCChhhHHHHHHhcCce------EEEechhhhcccccC
Q 000072 1047 NCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLM------IAVIPFTSKILEPCQ 1120 (2425)
Q Consensus 1047 ~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LL~eaY~~g~L------~~VIPFV~KVLe~~~ 1120 (2425)
.....+... ...++...+|+--+||.+..-+=-+.. .+.+++-+--....- ..-|=.+|.+|+.|.
T Consensus 80 ~f~~~~e~~----~~~~~~~~~~~i~fl~eL~~~~~i~~~----~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G 151 (200)
T smart00543 80 EFEKGLESE----EESDKQRRLGLVRFLGELYNFQVLTSK----IILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCG 151 (200)
T ss_pred HHHHHHHHH----HHHhhhhHHhHHHHHHHHHHcccCcHH----HHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhh
Confidence 776654432 335667778888888888765443322 122222222222111 134456777888776
Q ss_pred CCccccCCCccHHH-HHHHHHHHhcCC---cccchhHHHHHHHHh
Q 000072 1121 SSLAYQPPNPWTMA-ILGLLAEIYSMP---NLKMNLKFDIEVLFK 1161 (2425)
Q Consensus 1121 ~S~vFkPPNPWtm~-IL~lL~Ely~~~---~LKlnLKFEIEVL~K 1161 (2425)
..--+ +.+|=.|. ++..+....... .+....+|-+|-|+.
T Consensus 152 ~~l~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~r~~~~l~~l~~ 195 (200)
T smart00543 152 KDLER-EKSPKLLDEILERLQDYLLKKDKTELSSRLRFMLELLIE 195 (200)
T ss_pred HHHcC-cccHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHH
Confidence 65433 56655554 445555555555 577777888887765
No 7
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=81.67 E-value=4.3 Score=52.51 Aligned_cols=127 Identities=21% Similarity=0.274 Sum_probs=91.1
Q ss_pred HHHHHHHhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhc
Q 000072 1318 AMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQG 1397 (2425)
Q Consensus 1318 Ai~RAIrEII~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTCkEPLr~si~~~Lr~ll~~ 1397 (2425)
.+.-|-.. |.-.--| -||.+-+-+.|.|||-|++.. +-.|.|...+.+=+++.|---||-.||.|-+|-+=+.
T Consensus 241 glq~a~~k-I~GsnaR--CIa~L~afqevi~Dy~TP~~k----tlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~e 313 (556)
T KOG1467|consen 241 GLQYALGK-ISGSNAR--CIAMLQAFQEVIKDYTTPPEK----TLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKNE 313 (556)
T ss_pred HHHHhhcc-cCCccHH--HHHHHHHHHHHHHhccCCCcc----ccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHHH
Confidence 33333333 4444444 499999999999999999987 5667888888888887776689999999999966322
Q ss_pred ---CC---Cc---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhh
Q 000072 1398 ---LT---IA---SELLEQAVQLVTNDNLDLGCAVIEQAATDKAI-----------QTIDGEIAQQLSLRRKHR 1451 (2425)
Q Consensus 1398 ---~~---~~---~~~~E~~i~~~vnDNldLac~iIEKaA~EkAi-----------~eIde~l~~~~~~RRkhr 1451 (2425)
+. ++ ++.+-..|..-+++++.+|-..|-+.|.+|.- .-++..|..+-+.+++.|
T Consensus 314 I~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~fr 387 (556)
T KOG1467|consen 314 ISKLPISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFR 387 (556)
T ss_pred HhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceE
Confidence 22 22 45556668889999999999999999998842 234555666555444443
No 8
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=80.53 E-value=5.1 Score=46.33 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=80.4
Q ss_pred hHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHH---HHhhhcccCCcchHHHHHHHHHhCCh---hHHHHHHHHHHH
Q 000072 973 KISFIINNISALNVEAKAKEFTEILKEQYYPWFAQY---MVMKRASIEPNFHDLYLKFLDKVNSK---ALNREIVQATYE 1046 (2425)
Q Consensus 973 KI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~Y---LV~kRasiEPN~H~LYl~fl~~l~~~---~L~~~Vl~eTy~ 1046 (2425)
||.-++|-+|..|++.-++++.+..... .++...+ ++.++|..+|+|..+|..++..+... .+-..+++.+..
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~-~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~~~ 81 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSD-DPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRCQE 81 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 6778999999999999999999998776 4455444 34678999999999999999998743 556666666666
Q ss_pred HHHHHh-cccccccChHHHHHHHHhhhhhhhhhhhc
Q 000072 1047 NCKVLL-GSELIKSSSEERSLLKNLGSWLGKLTIGR 1081 (2425)
Q Consensus 1047 ~i~~LL-~Se~~~~ss~eRslLKNLGsWLG~iTLar 1081 (2425)
.+.... ..+.......++...+|+.-+||.+....
T Consensus 82 ~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~ 117 (209)
T PF02854_consen 82 EFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFG 117 (209)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhc
Confidence 555411 01222345677888899999999887643
No 9
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=42.67 E-value=1.6e+02 Score=31.25 Aligned_cols=85 Identities=16% Similarity=0.292 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHhhcCCCcccchhHHHHHHhhhhhhcCCCCCcHHHHHHHHHHHHHhhhhhccchh
Q 000072 671 AEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHL 750 (2425)
Q Consensus 671 ~ean~yfqkmY~~eisI~~iv~~L~~~k~S~~~rdqdiFaCMih~LFdEYrff~~YP~~eL~~TA~LFG~lI~~~Lv~~~ 750 (2425)
++++...+-.++. -..+|.+..+++++-+ ....++..-+|+..+|+ =..+-..++.|+..+++.++++..
T Consensus 3 k~i~~~l~ey~~~-~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~-------~~~~r~~~~~Ll~~L~~~~~~~~~ 72 (113)
T PF02847_consen 3 KKIFSILMEYFSS-GDVDEAVECLKELKLP--SQHHEVVKVILECALEE-------KKSYREYYSKLLSHLCKRKLISKE 72 (113)
T ss_dssp HHHHHHHHHHHHH-T-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTS-------SHHHHHHHHHHHHHHHHTTSS-HH
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHhcCCCCHH
Confidence 3344444443333 2678888888887666 56678888888888888 345566699999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 000072 751 TLGIALRGVLDALRK 765 (2425)
Q Consensus 751 ~L~iALr~VLeAlrk 765 (2425)
.+.-|+.-+++.+.+
T Consensus 73 ~~~~gf~~~l~~l~D 87 (113)
T PF02847_consen 73 QFQEGFEDLLESLED 87 (113)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhh
Confidence 999998888877754
No 10
>COG5088 SOH1 Rad5p-binding protein [General function prediction only]
Probab=32.10 E-value=96 Score=32.77 Aligned_cols=89 Identities=24% Similarity=0.339 Sum_probs=66.3
Q ss_pred ccHHHHHHHHHHHhhhcchhHhHHHHHhhhcccCCcchHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcccccccChHH
Q 000072 984 LNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEE 1063 (2425)
Q Consensus 984 ~Nl~~K~~Elk~~L~~~y~~WFA~YLV~kRasiEPN~H~LYl~fl~~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ss~e 1063 (2425)
+-+|-.++=+.-+-.+.|..|+++.=.-+ -+|| .-|++.++--.+|+--++|+--|.--|-.||++......-+|
T Consensus 15 sRFE~ELEFvQ~L~Np~Yl~~Ltq~~~fe----se~F-~~YL~YlEYWr~PeYs~fivYP~CL~iL~lLn~~~~~~~vs~ 89 (114)
T COG5088 15 SRFEVELEFVQSLANPQYLTLLTQQQIFE----SENF-KNYLKYLEYWRNPEYSQFIVYPNCLFILKLLNGFMESAIVSE 89 (114)
T ss_pred chhHHHHHHHHHhcCHHHHHHHHHhhhhc----CHHH-HHHHHHHHHhhCCcccceeechhHHHHHHHhcchhHhhhhhh
Confidence 44454444444444678888888754433 2344 569999999999999999887777778889998887777889
Q ss_pred HHHHHHhh-----hhhhhh
Q 000072 1064 RSLLKNLG-----SWLGKL 1077 (2425)
Q Consensus 1064 RslLKNLG-----sWLG~i 1077 (2425)
-.++|.|| -|||+.
T Consensus 90 ~~l~~~l~e~qy~~Wlnk~ 108 (114)
T COG5088 90 DGLLEGLDELQYPQWLNKM 108 (114)
T ss_pred hHHHHhhhHHHHHHHHHHH
Confidence 99999998 488764
No 11
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=31.07 E-value=1.2e+02 Score=30.86 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=45.6
Q ss_pred cHHHHHHHHHhhhhhchHHHHHHHHHHHHhccchhhHHHHhhhcccccCCCCCCCchHHHHHH
Q 000072 8 VPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVA 70 (2425)
Q Consensus 8 ~~~qi~~Lv~~l~k~n~~~~~~el~qlv~~G~ea~~~~L~~~l~~~~~~~~~~k~~~~~~Ll~ 70 (2425)
...+|+.+++.+-++||+..+..+.+++.-|+.+.- +++.+.+.+--. +.++..|..++.
T Consensus 4 ~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~-Il~~l~~~l~~~--~~~~~~k~~i~~ 63 (89)
T PF08542_consen 4 PPEVIEEILESCLNGDFKEARKKLYELLVEGYSASD-ILKQLHEVLVES--DIPDSQKAEILK 63 (89)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHH-HHHHHHHHHHTS--TSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHh--hccHHHHHHHHH
Confidence 468999999999999999999999999966999985 888888766333 455666665544
No 12
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.40 E-value=2.9e+02 Score=36.91 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=23.8
Q ss_pred hhccCCChhhHHHHHHHHHHHHHHHhh
Q 000072 1347 LKDYAMESDETRIYNAAHLMVASLAGS 1373 (2425)
Q Consensus 1347 ~KDFA~E~DE~kmr~AAh~MVr~LAgS 1373 (2425)
.+-|++.+||+.||.=...|-+.|-+=
T Consensus 404 ~~G~~L~~~EE~Lr~Kldtll~~ln~P 430 (508)
T KOG3091|consen 404 KRGYALTPDEEELRAKLDTLLAQLNAP 430 (508)
T ss_pred ccCCcCCccHHHHHHHHHHHHHHhcCh
Confidence 678999999999999999998887653
No 13
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=26.83 E-value=1e+02 Score=39.48 Aligned_cols=73 Identities=25% Similarity=0.461 Sum_probs=46.9
Q ss_pred chHhhhcCCCCC--ChHHHHHHHHHHHHhhhhhhcCCCCCchHHHHHHhHHHHHHHHH------------hcchhHHHHH
Q 000072 2080 FMPKLLIGNGQK--GWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLL------------HDFPEFLCDY 2145 (2425)
Q Consensus 2080 FmP~lL~~~~~~--GW~~~~~LL~~Ll~Fl~~~L~~~~ls~~i~~lYkGtLRilLvLl------------HDfPeFL~~y 2145 (2425)
|--.|+....|+ -|..+..+|-+++++.+||-- ..++|+||..+-... +|||+||-.
T Consensus 113 f~~dL~~G~~qkhP~l~~v~~~l~~~lr~fGpF~s--------~~IikSTLdFv~g~~iEq~nf~~~p~A~~fP~ylR~- 183 (357)
T cd00686 113 YFDDLQAGREQAHPWWALVNEHFPNVLRHFGPFCS--------LNLIRSTLDFFEGCWIEQYNFGGFPGSHDYPQFLRR- 183 (357)
T ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHhhhccCCCCCCcccchHHHh-
Confidence 333444433333 477788888888888898854 678899999865442 478888743
Q ss_pred hHhhhccCCCCccccccceecccCCC
Q 000072 2146 HFTFCDVIPPSCIQMRNIILSAFPRN 2171 (2425)
Q Consensus 2146 h~~lc~~IP~~ciQLRNlILSA~P~~ 2171 (2425)
-+-++.- .-.+.||+.
T Consensus 184 ----ksGl~E~------yA~FiFPk~ 199 (357)
T cd00686 184 ----MNGLGHC------VGASLWPKE 199 (357)
T ss_pred ----ccCCcce------eEEEecchh
Confidence 3334332 356778875
No 14
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=20.55 E-value=2.5e+02 Score=29.96 Aligned_cols=71 Identities=13% Similarity=0.279 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHhhcCCCcccchhHHHHHHhhhhhhcCCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000072 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (2425)
Q Consensus 686 sI~~iv~~L~~~k~S~~~rdqdiFaCMih~LFdEYrff~~YP~~eL~~TA~LFG~lI~~~Lv~~~~L~iALr~VLeAlrk 765 (2425)
..+|.+..+++++.+ ....++....|+--+||- .++-..++.|+..+.+.++++...+.-|+.-+++.+.+
T Consensus 17 D~~ea~~~l~~L~~~--~~~~~vv~~~i~~~le~~-------~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~d 87 (113)
T smart00544 17 DTDEAVHCLLELKLP--EQHHEVVKVLLTCALEEK-------RTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIED 87 (113)
T ss_pred CHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCC-------ccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChh
Confidence 678888888888766 478889999999989982 34466699999999999999999999999999988876
Done!