Query 000072
Match_columns 2425
No_of_seqs 220 out of 294
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 12:50:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gmj_A CCR4-NOT transcription 100.0 6E-81 2E-85 709.1 20.1 217 966-1182 3-221 (229)
2 4b89_A General negative regula 100.0 4.9E-81 1.7E-85 712.3 15.5 220 960-1181 24-243 (249)
3 4b8b_A General negative regula 100.0 7.7E-78 2.6E-82 749.5 35.4 480 315-819 90-597 (603)
4 3rk6_A Polyadenylate-binding p 73.1 7 0.00024 45.8 8.4 187 967-1161 16-232 (234)
5 2vso_E Eukaryotic initiation f 68.4 12 0.0004 45.1 9.1 194 965-1161 31-275 (284)
6 1hu3_A EIF4GII; heat repeat, t 58.0 12 0.00041 44.4 6.5 187 968-1161 9-235 (260)
7 1h2v_C 80 kDa nuclear CAP bind 33.0 1.1E+02 0.0036 42.0 10.2 224 2095-2377 352-631 (771)
8 2rg8_A Programmed cell death p 30.0 2.1E+02 0.0071 31.6 10.2 89 666-765 6-94 (165)
9 2ion_A PDCD4, programmed cell 22.5 2.9E+02 0.01 30.0 9.6 90 667-765 6-95 (152)
10 2nsz_A Programmed cell death p 20.2 3.8E+02 0.013 28.3 9.6 90 667-765 4-93 (129)
No 1
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=100.00 E-value=6e-81 Score=709.07 Aligned_cols=217 Identities=48% Similarity=0.862 Sum_probs=214.5
Q ss_pred CChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHHhhhcccCCcchHHHHHHHHHhCChhHHHHHHHHHH
Q 000072 966 PASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATY 1045 (2425)
Q Consensus 966 P~e~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~YLV~kRasiEPN~H~LYl~fl~~l~~~~L~~~Vl~eTy 1045 (2425)
++|+|||||+|||||+|++|+++|++|+|++|+++|++|||+|||++|||+|||||+||++|+++++++.|+++|+++||
T Consensus 3 ~de~v~dki~Fi~NNls~~N~~~k~~elk~~l~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~~l~~~vl~~T~ 82 (229)
T 4gmj_A 3 LEENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETY 82 (229)
T ss_dssp SCHHHHHHHHHHHHSCCSSTHHHHHHHHHHHSCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHhhhhheeehhcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcccccCCCChhhHHHHHHhcCc--eEEEechhhhcccccCCCc
Q 000072 1046 ENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSL 1123 (2425)
Q Consensus 1046 ~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LL~eaY~~g~--L~~VIPFV~KVLe~~~~S~ 1123 (2425)
++|++||+|++++.+++||++|||||+|||+|||||||||+||+||+|+||+|||++|. |++|||||||||++|++|+
T Consensus 83 ~~i~~LL~s~~~~~~~~eR~~LKNLG~WLG~lTLarnkPI~~~~l~~K~LL~eay~~g~~rL~~viPFVcKvLe~~~~S~ 162 (229)
T 4gmj_A 83 RNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSV 162 (229)
T ss_dssp HHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCCCTTTCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCT
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHccCCCchhcccCHHHHHHHHHHCCCceEEEeehhHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999995 9999999999999999999
Q ss_pred cccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCccccccccccccchhh
Q 000072 1124 AYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKRE 1182 (2425)
Q Consensus 1124 vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ld~~dieps~~L~~r~~~ 1182 (2425)
||||||||||+||++|+|||++|+||+|||||||||||+|++|++||+|+++|++|++.
T Consensus 163 iFkPPNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~l~~~~~~i~ps~~l~~~~~~ 221 (229)
T 4gmj_A 163 VFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRL 221 (229)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCCGGGSCCCSGGGCSTTG
T ss_pred cCCCCChhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHcCCChhhcCchhhhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999874
No 2
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=100.00 E-value=4.9e-81 Score=712.25 Aligned_cols=220 Identities=34% Similarity=0.658 Sum_probs=211.6
Q ss_pred CCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHHhhhcccCCcchHHHHHHHHHhCChhHHHH
Q 000072 960 ETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNRE 1039 (2425)
Q Consensus 960 ~~~~e~P~e~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~YLV~kRasiEPN~H~LYl~fl~~l~~~~L~~~ 1039 (2425)
...+|+|||+|+|||+|||||+|++|+++|++|+|++|+++||+|||+|||++|||+|||||+||++|+++++++.|+++
T Consensus 24 ~~~~e~P~~~v~dki~Fi~NNls~~Nl~~k~~el~~~l~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~~~L~~~ 103 (249)
T 4b89_A 24 QINQEGAPKDVVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSGLLHQF 103 (249)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHCCTTTHHHHHHHHHHHCCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHH
T ss_pred CccCCCcCHHHHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCCHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcccccCCCChhhHHHHHHhcCceEEEechhhhccccc
Q 000072 1040 IVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPC 1119 (2425)
Q Consensus 1040 Vl~eTy~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~~ 1119 (2425)
|+++||++|++||+++++ +++||++|||||+|||+|||||||||+||+||+|+||+|||++|||.+|||||||||++|
T Consensus 104 vl~~T~~~i~~LL~~~~i--~~~eRs~LKNLG~WLG~iTLarNkPI~~~~ld~K~LL~eay~~g~L~~vIPFVcKvLe~~ 181 (249)
T 4b89_A 104 MVNVTLRQLFVLLSTKDE--QAIDKKHLKNLASWLGCITLALNKPIKHKNIAFREMLIEAYKENRLEIVVPFVTKILQRA 181 (249)
T ss_dssp HHHHHHHHHHHHHTBSCG--GGSCHHHHHHHHHHHHHHTGGGTCCCCTTTBCHHHHHHHHHHHTCHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhhccc--ChHHHHHHHHHHHHHhHHHHhcCCCchhcccCHHHHHHHHHHcCCeEEEeeHHHHHHHhc
Confidence 999999999999999876 478999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCccccccccccccchh
Q 000072 1120 QSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1181 (2425)
Q Consensus 1120 ~~S~vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ld~~dieps~~L~~r~~ 1181 (2425)
++|+||||||||||+||++|+|||++|+||+|||||||||||+|++|++||+||++|+++++
T Consensus 182 k~SkiFkPPNPWt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~l~l~l~~i~ps~~l~~~~~ 243 (249)
T 4b89_A 182 SESKIFKPPNPWTVGILKLLIELNEKANWKLSLTFEVEVLLKSFNLTTKSLKPSNFINTPEV 243 (249)
T ss_dssp TTCSSSSTTCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCGGGSCCCCCC-----
T ss_pred ccCCccCCCCchHHHHHHHHHHHHhCcchhHhHHHHHHHHHHHcCCChHhCCcccccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999998765
No 3
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=7.7e-78 Score=749.50 Aligned_cols=480 Identities=21% Similarity=0.336 Sum_probs=375.8
Q ss_pred HHHHHHhhCC-CCCHHHHHHhc-----CCCCCCCCChhhHHHHHHHHhhhcCCCccccccccCccc-CchhhHHHHHHHh
Q 000072 315 LVKAIKQLAP-NTNWIRVVENL-----DYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWK-NTEGQLSFLRYAV 387 (2425)
Q Consensus 315 lv~alk~~~p-~~nW~~V~~~l-----D~~~f~i~d~~~l~ll~~~~~~~~~~~fpi~~l~~~~W~-N~~~Qlsfl~~~l 387 (2425)
+-.+++.+.. ++||.+|+..+ |. .-.-|+..++.-+++++..+ =+|+.++...|. .=.-.|.++-|-.
T Consensus 90 ~~~~~~~~~~~~inW~~vFnlms~~~f~~-~~~~pt~asls~~~~~L~~~----~liD~F~~~dw~~~f~~~l~~~L~~~ 164 (603)
T 4b8b_A 90 IARSISSLQANQINWNRVFNLMSTKYFLS-APLMPTTASLSCLFAALHDG----PVIDEFFSCDWKVIFKLDLAIQLHKW 164 (603)
T ss_dssp HHHHHHTSCGGGSCHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHCSH----HHHHHHHHSCCCHHHHHHHHHHHHTC
T ss_pred HHHHHHhccccccCHHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHcCCC----chHHHHHcCcchHhHhHHHHHHHHhc
Confidence 4466777755 89999999875 33 22345667777788877642 456666666664 3444555555555
Q ss_pred hCCCcccccCcCc-cccccccCCCCccccccccccccc---hHHHHHHHHH---hhhcCchHHHHHHhhhhhhcChhHHH
Q 000072 388 ASPPEVFTFAHSA-RQLPYVDAVPGLKLQSGQANHAWL---CLDLLDVLCQ---LSEMGHASFARSMLEYPLKQCPEMLL 460 (2425)
Q Consensus 388 ~~p~~~f~f~~~~-r~~v~~d~~~~~~~~~~~~~~~W~---sldl~e~L~~---Lae~~~~~~v~~l~e~p~k~~pe~ll 460 (2425)
+..-.-||+..++ -+.++- ..++.+ ...=.+. +||+ |.+.. +++...-....+.|+.-....||.+.
T Consensus 165 ~~~qg~~dl~~~~~~~~~~~-~~p~~~----~~ll~~~si~~l~l-~~~~~~~~~~~~~~~~~~~~~f~~d~~~~Peyla 238 (603)
T 4b8b_A 165 SVQNGCFDLLNAEGTRKVSE-TIPNTK----QSLLYLLSIASLNL-ELFLQREELSDGPMLAYFQECFFEDFNYAPEYLI 238 (603)
T ss_dssp CTTTTCCCGGGCTTCCBSCS-SSCCCS----CCGGGBHHHHHHHH-HHHHTTTTSCCCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CccCCchhhhcCCCceeccc-CCCCcc----cceeeeeehhhhhH-HHHHHHHHhccchhHHHHHHHHhhhhccCHHHHH
Confidence 4323346777766 234442 222221 0111122 3333 22222 22211223556899999999999997
Q ss_pred HHhhccCcch------hHHHHHHHHhhhHHhHcCCCch-HHHHHHHhhCChhHHHHHHHhhhcCCccHHHHHHHHHHhhh
Q 000072 461 LGMAHINTAY------NLIQYEVSFAVFPMIIKSTMSN-GMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKI 533 (2425)
Q Consensus 461 lgl~~i~~~~------~~l~~ell~~lf~~fl~~~~~~-~vi~~lW~~~~~~~~~~l~d~y~~d~~~l~rIldvaqelk~ 533 (2425)
+++..-.+.| ..+.+|++-.||-..+...+.+ .-+.+.+. ++.-++....+.+++|+.+++|++|||+|+||
T Consensus 239 l~~~~~~k~~~~~~en~~~i~~l~~~l~~~~~~~~~~~l~~~i~~~~-~~~k~~~~~~~Ii~kD~~~l~rildi~~elk~ 317 (603)
T 4b8b_A 239 LALVKEMKRFVLLIENRTVIDEILITLLIQVHNKSPSSFKDVISTIT-DDSKIVDAAKIIINSDDAPIANFLKSLLDTGR 317 (603)
T ss_dssp HHHHHTHHHHHHHHCCHHHHHHHHHHHHHHHHHSCGGGHHHHHHHCC-CHHHHHHHHHHHHHHSCSCCSHHHHHHHHTTC
T ss_pred HHHHhhccccccccccchHHHHHHHHHHHHHHhcChHHHHHHHHHcc-ChhHHHHHHHHHHhcCchhHHHHHHHHHHhCh
Confidence 7776544444 4556788888887666444333 23344444 44455588888899999999999999999999
Q ss_pred HHHHhhcCCchhHHHHHHHhhcccccCHHHHHHHHhhcCcchHHHHHHHHHHHHhhcccccccCCCCCCCcccccccchh
Q 000072 534 LSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEK 613 (2425)
Q Consensus 534 L~~ll~~~p~~f~idLa~lAsrre~l~lekWl~~~l~~~~~~f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~~t 613 (2425)
|+.||+..||+||+|+|++|+||||+|||+|++++++.+|.+ +|++||+.|+..+. +.. +.++..+|.++|
T Consensus 318 L~~lL~~~p~~faldLAalAs~rg~lnLe~WL~~~l~~~~~~---~lL~FL~~K~~~e~----~~~--~~~~~~~L~i~t 388 (603)
T 4b8b_A 318 LDTVINKLPFNEAFKILPCARQIGWEGFDTFLKTKVSPSNVD---VVLESLEVQTKMTD----TNT--PFRSLKTFDLFA 388 (603)
T ss_dssp HHHHHHHSCTTHHHHTHHHHHHHTCCCHHHHHHHHCCTTTHH---HHHHHHHHHHHCCC----C----CSCTTTSCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHhhcCch---HHHHHHHHHhhccc----cCC--CCCCCceecHHH
Confidence 999999999999999999999999999999999999999976 99999999997651 111 222345688899
Q ss_pred HHHHHHHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCC-CCCC-----CCCCCChhhHHHHHHHHHHHHhccCCCH
Q 000072 614 IPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGE-AADS-----STSEGYADDIEAEANSYFHQMFSGQLTI 687 (2425)
Q Consensus 614 v~~lL~~L~~~~~~~~s~~l~e~l~~v~~~~i~~~PrL~n~~-~~d~-----~~~~~~~~diE~ean~yfqkmY~~eisI 687 (2425)
+++||++|++. .++++..++++++|+.|+++||||+|++ |+|+ +.++.|++|||+|||+||||||++++||
T Consensus 389 v~~lLk~L~~~---~l~~e~~e~l~~vq~~~lq~yPRLiN~G~G~D~~i~an~~~~~~~~dIE~ean~yfqkmY~~eisI 465 (603)
T 4b8b_A 389 FHSLIEVLNKC---PLDVLQLQRFESLEFSLLIAFPRLINFGFGHDEAILANGDIAGINNDIEKEMQNYLQKMYSGELAI 465 (603)
T ss_dssp HHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHCGGGTTTTSSCHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHHHHHhCchhhcCCCcchhhhhccCCCCCCCHHHHHHHHHHHHHHHcCCCCH
Confidence 99999999864 4577889999999999999999999986 5554 4667899999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCcccchhHHHHHHhhhhhhcCCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCCC
Q 000072 688 EAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPA 767 (2425)
Q Consensus 688 ~~iv~~L~~~k~S~~~rdqdiFaCMih~LFdEYrff~~YP~~eL~~TA~LFG~lI~~~Lv~~~~L~iALr~VLeAlrkp~ 767 (2425)
+++|++|+|||+|+++||||||+||||+||||||||++||++||++||+|||+||+|+||++.+|++||||||||+|+||
T Consensus 466 ~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~Ll~~~~L~iALr~ILeAlrkp~ 545 (603)
T 4b8b_A 466 KDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRGFVLDVAFRIIMRFAKEPP 545 (603)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHhhhhhhHHHHHHh-cccccccccHHHHHHHHHHHHh
Q 000072 768 DSKMFVFGTKALEQFVDRLIEWPQYCNHIL-QISHLRSTHAELVAFIERALAR 819 (2425)
Q Consensus 768 ~SkMf~FGiqAL~qF~~RL~EwPqyC~~Ll-qip~L~~t~p~l~~~ie~~l~~ 819 (2425)
+||||+||++||+||++||+||||||.+|+ +||||+ ++|+||+.|+++...
T Consensus 546 ~skmf~FGi~ALeqF~~RL~ewPqyc~~lL~~ip~lq-~~P~l~q~i~~~a~~ 597 (603)
T 4b8b_A 546 ESKMFKFAVQAIYAFRIRLAEYPQYCKDLLRDVPALK-SQAQVYQSIVEAATL 597 (603)
T ss_dssp TSHHHHHHHHHHHHTGGGGGGCHHHHHHHHHHCGGGG-GCHHHHHHHHHTTC-
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcc-cChHHHHHHHHHHcC
Confidence 999999999999999999999999997766 799994 889999999887653
No 4
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=73.14 E-value=7 Score=45.81 Aligned_cols=187 Identities=16% Similarity=0.215 Sum_probs=112.1
Q ss_pred ChhhhHhHhhhhhcCC--cccHHHHHHHHHHHhh-----hcchhHhHHHHHhhhcccCCcchHHHHHHHHHhCCh-----
Q 000072 967 ASEVQDKISFIINNIS--ALNVEAKAKEFTEILK-----EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSK----- 1034 (2425)
Q Consensus 967 ~e~vqDKI~FIiNNlS--~~Nl~~K~~Elk~~L~-----~~y~~WFA~YLV~kRasiEPN~H~LYl~fl~~l~~~----- 1034 (2425)
++++..||.-|+|-|| ++|++.-++++.+.+. ++...-+..- |.+.|-.||||-.+|.++...+..+
T Consensus 16 ~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~l-IfekAi~ep~fs~~YA~LC~~l~~~l~~~~ 94 (234)
T 3rk6_A 16 GSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVEL-IYQQATSIPNFSYMGARLCNYLSHHLTISP 94 (234)
T ss_dssp --CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHH-HHHHHHSSTTCHHHHHHHHHHHHHHCCCCC
T ss_pred hHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHHHHhCcccHHHHHHHHHHHHHhcCCCC
Confidence 5789999999999999 9999999999888753 2344455554 4455889999999999999988642
Q ss_pred h---HHHHHH---HHHHHHHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcC------cccccCCC---ChhhHHHHH
Q 000072 1035 A---LNREIV---QATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN------QVLRAREI---DPKSLIIEA 1099 (2425)
Q Consensus 1035 ~---L~~~Vl---~eTy~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarN------kPI~~k~l---d~K~LL~ea 1099 (2425)
. +.+..| ++.|++-.....+| ...|...-+.--++|-+-.-.+ +++ +-.| .+++||-.-
T Consensus 95 ~~~~Fr~lLL~rcQ~eFe~~~~~~~~d-----~~~k~r~lg~i~FIgELf~~l~~~~~~~~~l-~e~I~~~ci~~Ll~~l 168 (234)
T 3rk6_A 95 QSGNFRQLLLQRCRTEYEVKDQAAKGD-----EVTRKRFHAFVLFLGELYLNLEIKGTNGQVT-RADILQVGLRELLNAL 168 (234)
T ss_dssp TTCCHHHHHHHHHHHHHTTHHHHTSSC-----HHHHHHHHHHHHHHHHHHHHCCEECTTSSEE-CCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhhHHhhhcc-----HHHHHHHHHHHHHHHHHHhhhcccccccchh-HHHHHHHHHHHHHHhc
Confidence 1 333333 23444433322222 1223322233336777765422 333 2222 356665432
Q ss_pred HhcCceEEEechhhhcccccCCCcc---ccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHh
Q 000072 1100 YEKGLMIAVIPFTSKILEPCQSSLA---YQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFK 1161 (2425)
Q Consensus 1100 Y~~g~L~~VIPFV~KVLe~~~~S~v---FkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K 1161 (2425)
.++ .-.--|-.+|++|..|.+.-= +.--.++.-.++.-|.++.+.+++--.++|=|+.|+.
T Consensus 169 ~~~-p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~dlie 232 (234)
T 3rk6_A 169 FSN-PMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVE 232 (234)
T ss_dssp HHS-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred cCC-CChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 221 111223344555443321100 0011268888999999999999999999999998864
No 5
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=68.37 E-value=12 Score=45.10 Aligned_cols=194 Identities=13% Similarity=0.134 Sum_probs=110.5
Q ss_pred CCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhc-------chhHhHHHHHhhhcccCCcchHHHHHHHHHhCCh---
Q 000072 965 APASEVQDKISFIINNISALNVEAKAKEFTEILKEQ-------YYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSK--- 1034 (2425)
Q Consensus 965 ~P~e~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~-------y~~WFA~YLV~kRasiEPN~H~LYl~fl~~l~~~--- 1034 (2425)
...+++.-||.-|+|-||++|++.=+.+|.++-... -..=+. -+|.+.|-.||+|=.+|.+|+..|...
T Consensus 31 ~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi-~~If~kA~~ep~fs~~YA~Lc~~l~~~l~~ 109 (284)
T 2vso_E 31 LDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVI-EQIFLKACDEPHWSSMYAQLCGKVVKELNP 109 (284)
T ss_dssp CCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHH-HHHHHHHHHCGGGHHHHHHHHHHHHHHSCT
T ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHH-HHHHHHHHcCcchHHHHHHHHHHHHHhcCc
Confidence 456889999999999999999999999998775321 111133 256778999999999999999886532
Q ss_pred -------------hHH-HHHHHHHHHHHHHHhcccccccC------------------hHHHHHHHHhhhhhhhhhhhcC
Q 000072 1035 -------------ALN-REIVQATYENCKVLLGSELIKSS------------------SEERSLLKNLGSWLGKLTIGRN 1082 (2425)
Q Consensus 1035 -------------~L~-~~Vl~eTy~~i~~LL~Se~~~~s------------------s~eRslLKNLGsWLG~iTLarN 1082 (2425)
.++ +.+|+..-..-.... .++...+ ...|..--|+-.++|-+-.-+=
T Consensus 110 ~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~-~~~~~~~~~~~~~e~e~~~~e~~~~~~~k~r~lg~i~FIgeLyk~~~ 188 (284)
T 2vso_E 110 DITDETNEGKTGPKLVLHYLVARCHAEFDKGW-TDKLPTNEDGTPLEPEMMSEEYYAAASAKRRGLGLVRFIGFLYRLNL 188 (284)
T ss_dssp TCCBCC---CCTHHHHHHHHHHHHHHHHHHCC-CSSCC------------CCTTHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHhhhh-hhhhhhccccchhhhhhhhhHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 122 233322111111111 1110000 0111222233456666543211
Q ss_pred cccccCCCChhhHHHHHHhcCceEEEechhhhcccccCCCccccCC---------CccHHHHHHHHHHHhcCCcccchhH
Q 000072 1083 QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPP---------NPWTMAILGLLAEIYSMPNLKMNLK 1153 (2425)
Q Consensus 1083 kPI~~k~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~~~~S~vFkPP---------NPWtm~IL~lL~Ely~~~~LKlnLK 1153 (2425)
-+-+.=.-.++.|| +.+....=.--|=.+|++|..|...-=-.+| -+..-.++.-|.++-+.+++---++
T Consensus 189 l~~~i~~~ci~~LL-~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~~l~~l~~~~~ls~Rir 267 (284)
T 2vso_E 189 LTGKMMFECFRRLM-KDLTDSPSEETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQTAKISSRIK 267 (284)
T ss_dssp SCHHHHHHHHHHHH-HHHHSCCCHHHHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred CcHHHHHHHHHHHh-ccCCCCCCHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 11000011244444 3322111122355678888777554222222 2578889999999988888888899
Q ss_pred HHHHHHHh
Q 000072 1154 FDIEVLFK 1161 (2425)
Q Consensus 1154 FEIEVL~K 1161 (2425)
|=||.++.
T Consensus 268 Fml~dlid 275 (284)
T 2vso_E 268 FKLIDIKE 275 (284)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998874
No 6
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=58.05 E-value=12 Score=44.38 Aligned_cols=187 Identities=14% Similarity=0.149 Sum_probs=108.0
Q ss_pred hhhhHhHhhhhhcCCcccHHHHHHHHHHHhh--hcchhHhHHHHHhhhcccCCcchHHHHHHHHHhCC---hh-------
Q 000072 968 SEVQDKISFIINNISALNVEAKAKEFTEILK--EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNS---KA------- 1035 (2425)
Q Consensus 968 e~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~--~~y~~WFA~YLV~kRasiEPN~H~LYl~fl~~l~~---~~------- 1035 (2425)
+.+..+|.-++|-||++|++.=+.++.++-- ++-..=+ --+|.++|-.||+|=.+|.+|+..|.. |.
T Consensus 9 ~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~v-i~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~~~~~ 87 (260)
T 1hu3_A 9 QELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGV-IDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNT 87 (260)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHH-HHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC--------
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcccCCccc
Confidence 6788999999999999999998888765311 1111112 136888999999999999999999975 11
Q ss_pred --HHHHHHH---HHHHHHHHHhc--ccccc-----cChHHH---------------HHHHHhhhhhhhhhhhcCcccccC
Q 000072 1036 --LNREIVQ---ATYENCKVLLG--SELIK-----SSSEER---------------SLLKNLGSWLGKLTIGRNQVLRAR 1088 (2425)
Q Consensus 1036 --L~~~Vl~---eTy~~i~~LL~--Se~~~-----~ss~eR---------------slLKNLGsWLG~iTLarNkPI~~k 1088 (2425)
+-+.+|+ +.|++...-.. .++.+ ..+.|| ..--|+-.++|-+-.-+=-+-+.=
T Consensus 88 ~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~~i~ 167 (260)
T 1hu3_A 88 VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIM 167 (260)
T ss_dssp -CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCHHHH
T ss_pred hHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCHHHH
Confidence 2233332 23333211000 00000 112222 222356667777665321111100
Q ss_pred CCChhhHHHHHHhcCceEEEechhhhcccccCCCccccC-CCccHHHHHHHHHHHhcCCcccchhHHHHHHHHh
Q 000072 1089 EIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQP-PNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFK 1161 (2425)
Q Consensus 1089 ~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~~~~S~vFkP-PNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K 1161 (2425)
.-.++.|| +..+. --|=.+|++|..|...- .++ +.+.+-.++.-|.++-+.+++---.+|=||.++.
T Consensus 168 ~~~l~~Ll-~~~~e----~~iE~l~~lL~tvG~~L-~~~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~d 235 (260)
T 1hu3_A 168 HDCVVKLL-KNHDE----ESLECLCRLLTTIGKDL-DFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVID 235 (260)
T ss_dssp HHHHHHHH-HSCSH----HHHHHHHHHHHHHHHHH-CCTTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCH----HHHHHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 11233333 21111 13556788888876553 333 3367888999999988888888889999999875
No 7
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=32.98 E-value=1.1e+02 Score=41.97 Aligned_cols=224 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCCchHHHHHH--------hHHHHHHHHHhcchhH-------------------------
Q 000072 2095 YIQRLLVNLLQFLEPFLRNAELGVPVRFLYK--------GTLRVLLVLLHDFPEF------------------------- 2141 (2425)
Q Consensus 2095 ~~~~LL~~Ll~Fl~~~L~~~~ls~~i~~lYk--------GtLRilLvLlHDfPeF------------------------- 2141 (2425)
.|+.|++.|.| +.|-.=..-+..+++.+|+ -.-|+.--..|=+--|
T Consensus 352 yY~sll~eLCk-l~P~~~~~v~~~ai~~lY~~i~~md~e~~~Rf~dwFShhLSNF~f~W~W~eW~~~~e~~~~~p~r~Fi 430 (771)
T 1h2v_C 352 MYTTLLIELCK-LQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFV 430 (771)
T ss_dssp HHHHHHHHHHH-HSTTTHHHHHHHHHHHHHHTGGGBCHHHHHHHHHHHHHHHTTTTTCCCGGGGGGGTTSCTTSHHHHHH
T ss_pred HHHHHHHHHHH-hChHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhcCCcCccHHHhHHhhcCCccCcHHHHH
Q ss_pred ---------HHHHhHhhhccCCCCccccccceecccCCCCCCCCCCCCCCCCCCCcCcCCCCccccchHHHHHHhhhhHH
Q 000072 2142 ---------LCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRAD 2212 (2425)
Q Consensus 2142 ---------L~~yh~~lc~~IP~~ciQLRNlILSA~P~~mrLPDPftp~LkvD~LpEi~~~P~I~~d~~~~L~~~~lk~~ 2212 (2425)
| .||-.+-+.+|+.+.+| +|.+..|+.|.+ -++-...|- ..+-+.
T Consensus 431 k~ll~k~~RL-Sy~~rIk~~lP~~~~~l-------------lp~~p~p~f~y~-~e~~~~~p~-----------~~~a~~ 484 (771)
T 1h2v_C 431 REVLEKCMRL-SYHQRILDIVPPTFSAL-------------CPSNPTCIYKYG-DESSNSLPG-----------HSVALC 484 (771)
T ss_dssp HHHHHHHHHT-SCHHHHHTTSCGGGGGG-------------SCCCCCCCCTTS-TTSCTTSTT-----------HHHHHH
T ss_pred HHHHHHHHhh-hhHHHHHHhCcHHHHhh-------------CCCCCCCCceeC-CccccCCcc-----------hHHHHH
Q ss_pred HHHHhccCCCCcchHHHHHHHccCCccccccC-CccccHhHHHHHHHHHHHHHHHhhhccCCcccccCCCCchhhhhhhH
Q 000072 2213 VDDYLKTGQPGSSFLSELKQKLLLPPSEAASA-GTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSA 2291 (2425)
Q Consensus 2213 vD~yL~~r~~~~~~l~~l~~~L~~~~~~~~~~-G~~yN~~liNAlVLyVG~~Ai~~~~~~~~~~~~~~~~~~~~~f~~s~ 2291 (2425)
+-++++.+.+...+...|++ +..+..+.... +..+|.-.++.+| |++-.+.+|+-+-..+.. +-
T Consensus 485 l~~~ir~k~~~eei~~~l~~-i~~~~~~~~~~~~~~~~~~~i~v~~-----q~ll~~GskS~SH~~~~l---------er 549 (771)
T 1h2v_C 485 LAVAFKSKATNDEIFSILKD-VPNPNQDDDDDEGFSFNPLKIEVFV-----QTLLHLAAKSFSHSFSAL---------AK 549 (771)
T ss_dssp HHHHHHTTCCHHHHHHHGGG-CC-------------CCHHHHHHHH-----HHHHHHSTTCHHHHHHHH---------HH
T ss_pred HHHHHHccCCHHHHHHHHHh-chhcccccccccccccchHHHHHHH-----HHHHHhccchHHHHHHHH---------HH
Q ss_pred HHHHHHHHHhccChhhHHHHHHHHHhhhcCCChhHHHHHH-------------HHHHHhhcccchhhHHHHHHHHHHHhc
Q 000072 2292 ALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSF-------------VLLYLYAEANQEIIQEQITRVLFERLI 2358 (2425)
Q Consensus 2292 ~~~il~~L~~~ld~EgRY~ll~aiaNQLRYPNsHT~yFS~-------------~lL~LF~~~~~~~IqEqItRVLLERLI 2358 (2425)
+.+.|..|+. +.|+|..+|.++..--+. |.+.-+=.. ++-++|++......
T Consensus 550 y~~~lk~l~~--~~~~q~~il~~v~~~W~~-~~q~~~ividkll~~~iv~p~~Vv~w~f~~~~~~~~------------- 613 (771)
T 1h2v_C 550 FHEVFKTLAE--SDEGKLHVLRVMFEVWRN-HPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDF------------- 613 (771)
T ss_dssp THHHHHHHTS--SHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTSSCHHHHHHHHTSGGGTTTT-------------
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHHHhc-CCceEehHHHHHHhcCCCCHHHHHHHHcCchhhhHH-------------
Q ss_pred cCCCCChHHHHHHHHHhhC
Q 000072 2359 VNRPHPWGLLITFIELIKN 2377 (2425)
Q Consensus 2359 v~rPHPWGLlITFiELiKN 2377 (2425)
.++|.|-++-.-++-+++
T Consensus 614 -~~~~~weil~~ti~kv~~ 631 (771)
T 1h2v_C 614 -TRLFVWEILHSTIRKMNK 631 (771)
T ss_dssp -TSHHHHHHHHHHHHHHHH
T ss_pred -hhhhHHHHHHHHHHHHHH
No 8
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=29.96 E-value=2.1e+02 Score=31.62 Aligned_cols=89 Identities=10% Similarity=0.183 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHhhcCCCcccchhHHHHHHhhhhhhcCCCCCcHHHHHHHHHHHHHhhhhh
Q 000072 666 ADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQ 745 (2425)
Q Consensus 666 ~~diE~ean~yfqkmY~~eisI~~iv~~L~~~k~S~~~rdqdiFaCMih~LFdEYrff~~YP~~eL~~TA~LFG~lI~~~ 745 (2425)
.+++++++++..+.+|+.. .++|.+.-++.++... .-..+....|..-||. + ++|=..+++|+-.+.. +
T Consensus 6 ~ee~~kk~~~ii~EYf~~~-D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldr-----k--~~ere~~s~LL~~L~~-~ 74 (165)
T 2rg8_A 6 ERAFEKTLTPIIQEYFEHG-DTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEG-----K--ASHREMTSKLLSDLCG-T 74 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTS-----C--HHHHHHHHHHHHHHBT-T
T ss_pred HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcC-----C--HHHHHHHHHHHHHHHH-C
Confidence 4688999999999988864 6899999999988432 4445556666666664 2 4555569999999965 9
Q ss_pred ccchhHHHHHHHHHHHHhcC
Q 000072 746 LVTHLTLGIALRGVLDALRK 765 (2425)
Q Consensus 746 Lv~~~~L~iALr~VLeAlrk 765 (2425)
+++.-.+.-|+..+++.+-+
T Consensus 75 ~ls~~~i~~Gf~~lle~ldD 94 (165)
T 2rg8_A 75 VMSTTDVEKSFDKLLKDLPE 94 (165)
T ss_dssp TBCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhChh
Confidence 99999999999999988765
No 9
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.49 E-value=2.9e+02 Score=30.02 Aligned_cols=90 Identities=12% Similarity=0.160 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHhhcCCCcccchhHHHHHHhhhhhhcCCCCCcHHHHHHHHHHHHHhhhhhc
Q 000072 667 DDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQL 746 (2425)
Q Consensus 667 ~diE~ean~yfqkmY~~eisI~~iv~~L~~~k~S~~~rdqdiFaCMih~LFdEYrff~~YP~~eL~~TA~LFG~lI~~~L 746 (2425)
+++++++++..+.+|+.. .++|.+.-++.++.. ..-.++-...|..-+|.- .+++-..++.|+-.+.+.++
T Consensus 6 eel~kki~~lL~EY~~~~-D~~EA~~cl~EL~~p--~f~~e~V~~~i~~alE~~------~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 6 NHLVKEIDMLLKEYLLSG-DISEAEHCLKELEVP--HFHHELVYEAIVMVLEST------GESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp CHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCC------SSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHCCC
Confidence 578899999988888864 689999999999753 333455444444445521 34666779999999999999
Q ss_pred cchhHHHHHHHHHHHHhcC
Q 000072 747 VTHLTLGIALRGVLDALRK 765 (2425)
Q Consensus 747 v~~~~L~iALr~VLeAlrk 765 (2425)
|+.-.+.-|+.-|++.+-+
T Consensus 77 is~~q~~~Gf~~vl~~ldD 95 (152)
T 2ion_A 77 ITIDQMKRGYERIYNEIPD 95 (152)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhChH
Confidence 9999999999999988754
No 10
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=20.18 E-value=3.8e+02 Score=28.26 Aligned_cols=90 Identities=12% Similarity=0.160 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHhhcCCCcccchhHHHHHHhhhhhhcCCCCCcHHHHHHHHHHHHHhhhhhc
Q 000072 667 DDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQL 746 (2425)
Q Consensus 667 ~diE~ean~yfqkmY~~eisI~~iv~~L~~~k~S~~~rdqdiFaCMih~LFdEYrff~~YP~~eL~~TA~LFG~lI~~~L 746 (2425)
+++++++++..+.+|+.. .++|.+.-++.++.. ..-.++-...|..-+|.- .+++-..++.|+-.+.+.++
T Consensus 4 eel~kki~~ll~EY~~~~-D~~Ea~~cl~eL~~p--~f~~e~V~~~i~~alE~~------~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 4 NHLVKEIDMLLKEYLLSG-DISEAEHCLKELEVP--HFHHELVYEAIVMVLEST------GESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp CHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCC------SSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHCCC
Confidence 578899999888888864 689999999999743 333445444444445521 23555679999999999999
Q ss_pred cchhHHHHHHHHHHHHhcC
Q 000072 747 VTHLTLGIALRGVLDALRK 765 (2425)
Q Consensus 747 v~~~~L~iALr~VLeAlrk 765 (2425)
|+.-.+.-|+.-|++.+-+
T Consensus 75 is~~q~~~Gf~~v~~~l~D 93 (129)
T 2nsz_A 75 ITIDQMKRGYERIYNEIPD 93 (129)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhChH
Confidence 9999999999999988754
Done!