BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000073
(2421 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ZQ08|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1
PE=1 SV=2
Length = 2375
Score = 610 bits (1572), Expect = e-173, Method: Compositional matrix adjust.
Identities = 343/786 (43%), Positives = 477/786 (60%), Gaps = 63/786 (8%)
Query: 1653 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 1707
Q L A+ A + Q + S + ++L SRD AAL + QK +GL + S
Sbjct: 1620 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1679
Query: 1708 --LHFSAHLAILAAIRD-------VCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELL 1758
+ HL +L A++D C K++T +I +E K+N + LIR+ L+
Sbjct: 1680 LLRYRECHLLVLKALQDGRAYGSPWCN---KQITRCLIECRDEYKYNVEAVELLIRNHLV 1736
Query: 1759 NLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA- 1814
N+ +Y++H+A+ ++ G N A FA+ L++ L+ DE + + ++L + ++ L ++ A
Sbjct: 1737 NMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAH 1796
Query: 1815 -KPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPE 1873
+ +PE L QL+E+VR+ A D+A + +S + E Y+
Sbjct: 1797 SRGNAPEGLPQLMEVVRS----------NYEAMIDRAHGGPNFMMHSGISQASE-YD--- 1842
Query: 1874 SVDPDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFF 1930
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFF
Sbjct: 1843 ----DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFF 1898
Query: 1931 RRLTEVSVA---HCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK-CCPVEQGS 1986
R TE+ V + + NP +P ++ + +D + +L+ ++K
Sbjct: 1899 RLCTEMCVEISYRAQAEQQHNPAA--NPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTV 1956
Query: 1987 SKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILS 2046
+KI LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+
Sbjct: 1957 TKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLT 2016
Query: 2047 AFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGN-GQKGWPYIQRLLVNLLQFLEP 2105
AF N FH+L+P K P F +AWLEL+SHR F+ ++L QKGWP +LL++L ++L P
Sbjct: 2017 AFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAP 2076
Query: 2106 FLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFP 2165
FLRN EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFP
Sbjct: 2077 FLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFP 2136
Query: 2166 RNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSE 2225
RNMRLPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+
Sbjct: 2137 RNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSD 2194
Query: 2226 LKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLV 2285
L+ L + + G RYN+ LIN+LVLYVG QAI +H + G+ S++
Sbjct: 2195 LRSNLQV----SNEPGNRYNLQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITH 2243
Query: 2286 SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQI 2345
SA +DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +LYL+AEAN E IQEQI
Sbjct: 2244 SAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQI 2303
Query: 2346 TRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLK 2405
TRVL ERLIVNRPHPWGLLITFIELIKNP + FWN F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2304 TRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQK 2363
Query: 2406 PVDDSM 2411
M
Sbjct: 2364 QAQQVM 2369
Score = 345 bits (886), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 198/555 (35%), Positives = 306/555 (55%), Gaps = 58/555 (10%)
Query: 948 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1073 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1131
Query: 1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 1067
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1132 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1191
Query: 1068 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 1125
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE SL +
Sbjct: 1192 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVF 1251
Query: 1126 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 1185
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R
Sbjct: 1252 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1311
Query: 1186 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 1245
+ S QP+ +P + S PP H ++ Y+
Sbjct: 1312 DEQLSAPKKDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYS------ 1365
Query: 1246 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTAL 1305
LA L H+ +N +
Sbjct: 1366 ---------LAGL----------------------------------APHITLNPTIPLF 1382
Query: 1306 GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHL 1365
H ++ V A++RA++E+V +V RS+ IA T +++V KD+A++S+E+R+ AAH
Sbjct: 1383 QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHH 1442
Query: 1366 MVASLAGSLAHVTCKEPLRGSISSQLRNSL-QGLTIAS----ELLEQAVQLVTNDNLDLG 1420
M+ +L +A +TC+EPL SIS+ L+NS L AS E+++QA + DN +L
Sbjct: 1443 MMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNCELA 1502
Query: 1421 CAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPG 1480
C I++ A +KA +D +A + L RKH G + DP + + +PE +R K G
Sbjct: 1503 CCFIQKTAVEKAGPEMDKRLATEFEL-RKHARQEGRRYCDPVVLTYQAERMPEQIRLKVG 1561
Query: 1481 HLSVSQQRVYEDFVR 1495
+ Q VYE+F R
Sbjct: 1562 GVDPKQLAVYEEFAR 1576
Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 168/630 (26%), Positives = 293/630 (46%), Gaps = 73/630 (11%)
Query: 10 SQIRFLLQSLNEANADSVFRELCQFI-EYGIEGSTMMLQTCMDHLNLHGTGL---KNPQL 65
SQI +L+ +L + N + +E+ + +G E +L+ H++ G G K+
Sbjct: 11 SQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQ 70
Query: 66 ESVVASVFKYIMDKPNFSTVFSQSV-------KITEINEQLLENLSDVLNLSLPERIGIG 118
+ ++ KPNF + S ++ K + L LS VL LS + + G
Sbjct: 71 TQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLKLSKVQEVIFG 130
Query: 119 LALSDSENLDALMCGKNFCMAQIERLCAN----PVPMNSAEQIQNIIM-----------F 163
LAL +S + D F ++ L + V N Q+I + F
Sbjct: 131 LALLNSSSPDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEVLHLLLSHLLF 190
Query: 164 LQRSS--DLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDD 221
Q+ + + +D+ ++ L ++ VL P+L + E RD
Sbjct: 191 GQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLL---------------YPEKRDIL 235
Query: 222 FDDIL------AEMEKEMSMGDVMNELGYGCSADASQCKEILSLF--TPLTEITLSRILG 273
D IL A+ E S+ D M E+GYG A +C+ I+ F +T ++R+LG
Sbjct: 236 MDRILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLG 295
Query: 274 AIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLS------SWNVDVLVKAIKQLAPNTN 327
+ARTH+GL D S A G SD S +WNV+VL+ +K+L P+ N
Sbjct: 296 MMARTHSGLTDGIPLQSIS--APGSGIWSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLN 353
Query: 328 WIRVVENLDYEGFYIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYA 386
+ V LD+ GF I + + + + E FP+ + WK+ EGQLSF++++
Sbjct: 354 FKEVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRP-WKHAEGQLSFIQHS 412
Query: 387 VASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARS 446
+ +P EVF FA D + + W LDL++ L +L+E+G +
Sbjct: 413 LINP-EVFCFADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQ 471
Query: 447 MLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VN 502
+ +P+K CP+ML+L + INT+++ +++E+ + P+ + + ++ +ILH WH +
Sbjct: 472 LFSFPIKHCPDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQS 531
Query: 503 PNI-------VLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQ 555
P+I + ++ + + RIL++ Q+LK LS +L P F I LA +AS+
Sbjct: 532 PSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASR 591
Query: 556 KELVDLEKWLSINLSTYKDVFFEECLKFVK 585
+E + L+KWL+ + + + F + C+ F+K
Sbjct: 592 REYLKLDKWLTDKIREHGEPFIQACMTFLK 621
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 662 SEGYADDIEAEANSYFHQMFSG----QLTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 836 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF 895
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 896 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 955
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 956 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 992
>sp|A5YKK6|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1
PE=1 SV=2
Length = 2376
Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust.
Identities = 344/786 (43%), Positives = 477/786 (60%), Gaps = 63/786 (8%)
Query: 1653 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 1707
Q L A+ A + Q + S + ++L SRD AAL + QK +GL + S
Sbjct: 1621 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1680
Query: 1708 --LHFSAHLAILAAIRD-------VCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELL 1758
+ HL +L A++D C K++T +I +E K+N + LIR+ L+
Sbjct: 1681 LLRYRECHLLVLKALQDGRAYGSPWCN---KQITRCLIECRDEYKYNVEAVELLIRNHLV 1737
Query: 1759 NLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA- 1814
N+ +Y++H+A+ ++ G N A FA+ L++ L+ DE + V ++L + ++ L ++ A
Sbjct: 1738 NMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAH 1797
Query: 1815 -KPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPE 1873
+ +PE L QL+E+VR+ A D+A + +S + E Y+
Sbjct: 1798 SRGNAPEGLPQLMEVVRS----------NYEAMIDRAHGGPNFMMHSGISQASE-YD--- 1843
Query: 1874 SVDPDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFF 1930
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFF
Sbjct: 1844 ----DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFF 1899
Query: 1931 RRLTEVSVA---HCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK-CCPVEQGS 1986
R TE+ V + + NP +P ++ + +D + +L+ ++K
Sbjct: 1900 RLCTEMCVEISYRAQAEQQHNPAA--NPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTV 1957
Query: 1987 SKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILS 2046
+KI LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+
Sbjct: 1958 TKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLT 2017
Query: 2047 AFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGN-GQKGWPYIQRLLVNLLQFLEP 2105
AF N FH+L+P K P F +AWLEL+SHR F+ ++L QKGWP +LL++L ++L P
Sbjct: 2018 AFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAP 2077
Query: 2106 FLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFP 2165
FLRN EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFP
Sbjct: 2078 FLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFP 2137
Query: 2166 RNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSE 2225
RNMRLPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+
Sbjct: 2138 RNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSD 2195
Query: 2226 LKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLV 2285
L+ L + + G RYN+ LIN+LVLYVG QAI +H + G+ S++
Sbjct: 2196 LRSNLQV----SNEPGNRYNLQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITH 2244
Query: 2286 SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQI 2345
SA +DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +LYL+AEAN E IQEQI
Sbjct: 2245 SAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQI 2304
Query: 2346 TRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLK 2405
TRVL ERLIVNRPHPWGLLITFIELIKNP + FWN F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2305 TRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQK 2364
Query: 2406 PVDDSM 2411
M
Sbjct: 2365 QAQQVM 2370
Score = 343 bits (881), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 197/555 (35%), Positives = 307/555 (55%), Gaps = 58/555 (10%)
Query: 948 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1074 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1132
Query: 1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 1067
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1133 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1192
Query: 1068 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 1125
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1193 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVF 1252
Query: 1126 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 1185
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R
Sbjct: 1253 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1312
Query: 1186 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 1245
+ S QP+ +P + S + PP H ++ Y+
Sbjct: 1313 DEQLSAPKKDVKQPEELPPITTTTTSTTPATNTTCTATVPPQPQYSYHDINVYS------ 1366
Query: 1246 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTAL 1305
LA L H+ +N +
Sbjct: 1367 ---------LAGL----------------------------------APHITLNPTIPLF 1383
Query: 1306 GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHL 1365
H ++ V A++RA++E+V +V RS+ IA T +++V KD+A++S+E+R+ AAH
Sbjct: 1384 QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHH 1443
Query: 1366 MVASLAGSLAHVTCKEPLRGSISSQLRNSL-QGLTIAS----ELLEQAVQLVTNDNLDLG 1420
M+ +L +A +TC+EPL SIS+ L+NS L AS E+++QA + DN +L
Sbjct: 1444 MMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNCELA 1503
Query: 1421 CAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPG 1480
C I++ A +KA +D +A + L RKH G + DP + + +PE +R K G
Sbjct: 1504 CCFIQKTAVEKAGPEMDKRLATEFEL-RKHARQEGRRYCDPVVLTYQAERMPEQIRLKVG 1562
Query: 1481 HLSVSQQRVYEDFVR 1495
+ Q VYE+F R
Sbjct: 1563 GVDPKQLAVYEEFAR 1577
Score = 200 bits (508), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 165/628 (26%), Positives = 291/628 (46%), Gaps = 69/628 (10%)
Query: 10 SQIRFLLQSLNEANADSVFRELCQFI-EYGIEGSTMMLQTCMDHLNLHGTGL---KNPQL 65
SQI +L+ +L + N + +E+ + +G E +L+ H++ G G K+
Sbjct: 11 SQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQ 70
Query: 66 ESVVASVFKYIMDKPNFSTVFSQSV-------KITEINEQLLENLSDVLNLSLPERIGIG 118
+ ++ KPNF + S ++ K + L LS VL LS + + G
Sbjct: 71 TQFLIQECALLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLKLSKVQEVIFG 130
Query: 119 LALSDSENLDALMCGKNFCMAQIERLCAN----PVPMNSAEQIQNIIM-----------F 163
LAL +S + D F ++ L + V N Q+I + F
Sbjct: 131 LALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEVLHLLLSHLLF 190
Query: 164 LQRSS--DLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDD 221
Q+ + + +D+ ++ L ++ VL P+L + E RD
Sbjct: 191 GQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLL---------------YPEKRDIL 235
Query: 222 FDDIL------AEMEKEMSMGDVMNELGYGCSADASQCKEILSLF--TPLTEITLSRILG 273
D IL A+ E S+ D M E+GYG A +C+ I+ F +T ++R+LG
Sbjct: 236 MDRILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIVQFGVREVTAAQVARVLG 295
Query: 274 AIARTHAGLEDNQNTFSTFTLALGC----STMSDLPPLSSWNVDVLVKAIKQLAPNTNWI 329
+ARTH+GL D S G SD +WNV+VL+ +K+L P+ N+
Sbjct: 296 MMARTHSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFK 355
Query: 330 RVVENLDYEGFYIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVA 388
V LD+ GF I + + + + E FP+ + WK+ EGQLSF+++++
Sbjct: 356 EVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRP-WKHAEGQLSFIQHSLI 414
Query: 389 SPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSML 448
+P E+F FA D + + W LDL++ L +L+E+G + +
Sbjct: 415 NP-EIFCFADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLF 473
Query: 449 EYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VNPN 504
+P+K CP+ML+L + INT+++ +++E+ + P+ + + ++ +ILH WH +P+
Sbjct: 474 SFPIKHCPDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPS 533
Query: 505 I-------VLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKE 557
I + ++ + + RIL++ Q+LK LS +L P F I LA +AS++E
Sbjct: 534 IRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRRE 593
Query: 558 LVDLEKWLSINLSTYKDVFFEECLKFVK 585
+ L+KWL+ + + + F + C+ F+K
Sbjct: 594 YLKLDKWLTDKIREHGEPFIQACMTFLK 621
Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 662 SEGYADDIEAEANSYFHQMFSG----QLTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 837 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF 896
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 897 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 956
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 957 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 993
>sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis
GN=cnot1 PE=2 SV=1
Length = 2388
Score = 607 bits (1565), Expect = e-172, Method: Compositional matrix adjust.
Identities = 338/755 (44%), Positives = 465/755 (61%), Gaps = 63/755 (8%)
Query: 1684 SRDE-AALAVAQKVFKGLYENASNN------LHFSAHLAILAAIRD-------VCKLVVK 1729
SRD AAL + QK +GL + S + HL +L A++D C K
Sbjct: 1664 SRDAIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGSPWCN---K 1720
Query: 1730 ELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQT 1789
++T +I +E K+N + LIR+ L+N+ +Y++H+A+ ++ G N A FA+ L++
Sbjct: 1721 QITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKI 1780
Query: 1790 LVTDE---SRVVISELHNLVDALAKLAA--KPGSPESLQQLIEIVRNPAANANASSGATT 1844
L+ DE S V +E + ++ L ++ A + +PE L QL++++R +N +A
Sbjct: 1781 LLVDERSVSHVTEAEFFHTIETLMRINAHSRGNAPEGLPQLMDVLR---SNFDAMM---- 1833
Query: 1845 AKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEW---YQICELPG 1901
++A + +S + E Y+ DP G E+ L EW Y
Sbjct: 1834 ---ERAHGGPNFMMHSGISQASE-YD-------DPPGLREKAEYLLREWVNLYHSAAAGR 1882
Query: 1902 SNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVA---HCLSSEVINPGTLQSPQQS 1958
+ A + +V Q+HQ G+LK DD+ RFFR TE+ V + + NP +P
Sbjct: 1883 DSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAA--NPTMI 1940
Query: 1959 QSLSFLAIDIYAKLMLSILK-CCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPR 2017
++ + +D + +L+ ++K +KI LL+K+L + V +L+D E +++ F
Sbjct: 1941 RAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHEVRQSEFQQL 2000
Query: 2018 PYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFM 2077
PY R+FI LL++++ + V + NFQ L+AF N FH+L+P K P F +AWLEL+SHR F+
Sbjct: 2001 PYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFI 2060
Query: 2078 PKLLIGN-GQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPE 2136
++L QKGWP +LL++L ++L PFLRN EL P++ LYKGTLRVLLVLLHDFPE
Sbjct: 2061 ARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPE 2120
Query: 2137 FLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEV 2196
FLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMRLPDP TPNLK+D+L EI PRI +
Sbjct: 2121 FLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNF 2180
Query: 2197 DAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYV 2256
+ Q + D+D YLKT P +FLSEL+ L + + G RYN+ LIN+LVLYV
Sbjct: 2181 TGVM-PPQFKKDLDSYLKTRSP-VTFLSELRSNLQV----SNEPGNRYNIQLINALVLYV 2234
Query: 2257 GMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLR 2316
G QAI +H + G+ S++ SA +DIFQ L DLDTEGRYLFLNA ANQLR
Sbjct: 2235 GTQAI-------AHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLR 2287
Query: 2317 YPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRY 2376
YPN+HTHYFS +LYL+AEAN E IQEQITRVL ERLIVNRPHPWGLLITFIELIKNP +
Sbjct: 2288 YPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAF 2347
Query: 2377 NFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSM 2411
FWN F+ CAPEIEKLF+SVA+ C G K M
Sbjct: 2348 KFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVM 2382
Score = 333 bits (854), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 197/555 (35%), Positives = 306/555 (55%), Gaps = 33/555 (5%)
Query: 948 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007
NI+TL+ A + +E P + VQ+KI+FI NN+S N+ K +E E +K+ Y PW +Q
Sbjct: 1060 NIDTLLVATDLAGQIVEPPEN-VQEKIAFIFNNLSQSNMTQKVEELKETVKDDYMPWVSQ 1118
Query: 1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 1067
Y+VMKR SIE NFH LY FLD + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1119 YLVMKRVSIELNFHSLYSNFLDALKHLEFNKMVLAETYRNIKVLLTSDKAAANFSDRSLL 1178
Query: 1068 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 1125
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1179 KNLGHWLGMITLAKNKPILHTDLDLKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVF 1238
Query: 1126 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 1185
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ D+ P +LLKD+ R
Sbjct: 1239 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLVLDINDLKPGTLLKDKDRLKSL 1298
Query: 1186 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 1245
+ S QP+ +P P+ AS + A L S
Sbjct: 1299 DEQLSAPKKDVKQPEELP---------------PMTSAS--------EYAIRTAGKLWAS 1335
Query: 1246 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTAL 1305
D A + + Q Q + + + + + H+ +N +
Sbjct: 1336 VEKQESDAVFTATATAPPPSTTCTTTVPPQPQYSYHDIHVYS-LAGLAPHITLNPTIPLF 1394
Query: 1306 GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHL 1365
H ++ V A++RA++E+V +V RS+ IA T +++V KD+A++S+E+R+ AAH
Sbjct: 1395 QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHH 1454
Query: 1366 MVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIAS-----ELLEQAVQLVTNDNLDLG 1420
M+ +L +A +TC+EPL SI++ L+NS A+ E++EQA + DN +L
Sbjct: 1455 MMRNLTAGMAMITCREPLLMSIATNLKNSFATAMRAASPQQREMMEQAAAQLAQDNCELA 1514
Query: 1421 CAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPG 1480
C I++ A +KA +D A + L RKH G + DP + + +PE +R K G
Sbjct: 1515 CCFIQKTAVEKAGPEMDKRPATEFEL-RKHARQEGRRYCDPVVLTYQAERMPEQIRLKVG 1573
Query: 1481 HLSVSQQRVYEDFVR 1495
+ Q VYE+F R
Sbjct: 1574 GVDPKQLAVYEEFAR 1588
Score = 195 bits (495), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 165/628 (26%), Positives = 294/628 (46%), Gaps = 69/628 (10%)
Query: 10 SQIRFLLQSLNEANADSVFRELCQFI-EYGIEGSTMMLQTCMDHLNLHGTGL---KNPQL 65
SQI +L+ +L + N + E+ + +G E +L+ H++ G G K+
Sbjct: 11 SQISYLVDNLTKKNYRASQLEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQ 70
Query: 66 ESVVASVFKYIMDKPNFSTVFSQSV-------KITEINEQLLENLSDVLNLSLPERIGIG 118
+ ++ KPNF + S ++ K + + L LS VL LS + + G
Sbjct: 71 TQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVLKLSKVQEVIFG 130
Query: 119 LALSDSENLDALMCGKNFCMAQIERLCANPVPMN-SAEQ---IQNIIM-----------F 163
LAL +S + + F ++ L + V ++ S Q Q+I + F
Sbjct: 131 LALLNSSSCELRGFAAQFVKQKLPDLLRSYVDVDVSGSQEGGFQDIAIEVLHLLLSNLLF 190
Query: 164 LQRSS--DLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDD 221
Q+ + + + + ++ L ++ VL P+L + E RD
Sbjct: 191 GQKGAFGVGQEQIVAFLKTLRRDFPQERCPVVLAPLL---------------YPEKRDIL 235
Query: 222 FDDILAE---MEKEM---SMGDVMNELGYGCSADASQCKEILSLF--TPLTEITLSRILG 273
D ILA+ + K M S+ D M E+GY A +C+ ++ F +T + ++R+LG
Sbjct: 236 MDRILADSGGITKTMMDSSLADFMQEVGYSFCASVEECRNVIVQFGVREVTAVQVARVLG 295
Query: 274 AIARTHAGLEDNQNTFSTFTLALGCST----MSDLPPLSSWNVDVLVKAIKQLAPNTNWI 329
+ARTH+GL D S + G + +D +WNV+VL+ +K+L P N+
Sbjct: 296 MMARTHSGLTDGIPLQSITSPGSGIWSDGKDKNDAVQPHTWNVEVLIDVVKELNPTLNFK 355
Query: 330 RVVENLDYEGFYIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVA 388
V LD F I + + + + E FP+ V WKN EGQLSF+++++
Sbjct: 356 EVTYELDNPSFQIRDSKGLQTVVYGIQRGLGIEAFPVDLVYRP-WKNAEGQLSFIQHSLV 414
Query: 389 SPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSML 448
+P +VF FA A D + + W LDL++ L +L+E+G + +
Sbjct: 415 NP-DVFCFADYACHAVATDILKAPPEDDNREIATWKSLDLIESLLRLAELGQYEQVKQLF 473
Query: 449 EYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VNPN 504
YP+K CP+ML+L + INT ++ +++E+ + P+ + + ++ +ILH WH +P+
Sbjct: 474 AYPIKHCPDMLVLALLQINTTWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPS 533
Query: 505 I-------VLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKE 557
I + ++ + + RIL++ Q+LK LS +L P F I LA +AS++E
Sbjct: 534 IRQLIMHAMAEWYMRGEQYDQARLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRRE 593
Query: 558 LVDLEKWLSINLSTYKDVFFEECLKFVK 585
+ L+KWL+ + + + F + C+ F+K
Sbjct: 594 YLKLDKWLTDKIREHGEPFIQACMTFLK 621
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 662 SEGYADDIEAEANSYFHQMFSG----QLTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 831 NQHFSKEIDDEANSYFQRIYNQPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLF 890
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 891 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYQSKMYFFGIA 950
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 951 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 987
>sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2
SV=1
Length = 2374
Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust.
Identities = 340/782 (43%), Positives = 478/782 (61%), Gaps = 56/782 (7%)
Query: 1653 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 1707
Q L A+ A + Q + S + +++ SRD AAL + QK +GL + S
Sbjct: 1620 QHLHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEGLLDATSGADPEL 1679
Query: 1708 --LHFSAHLAILAAIRDV----CKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLA 1761
+ HL +L A++D + K++T +I +E K+N + LIR+ L+N+
Sbjct: 1680 LLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ 1739
Query: 1762 EYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA--KP 1816
+Y++H+A+ ++ G N A FA+ L++ L+ DE S + ++L + ++ L + +A +
Sbjct: 1740 QYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTSAHSRA 1799
Query: 1817 GSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVD 1876
+PE L QL+++VR+ A D+ + +S + E Y+
Sbjct: 1800 NAPEGLPQLMDVVRS----------NYEAMIDRHHGGPNFMMHSGISQASE-YD------ 1842
Query: 1877 PDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRL 1933
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR
Sbjct: 1843 -DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLC 1901
Query: 1934 TE--VSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK-CCPVEQGSSKIF 1990
TE V +++ +E +P T SP ++ + +D + +L+ ++K +KI
Sbjct: 1902 TEMCVEISYRAQAEQQHPTT--SPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKIN 1959
Query: 1991 LLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFAN 2050
LL+K+L + V +++D + ++ F PY R+FI LL++++ + V + NFQ L+AF N
Sbjct: 1960 LLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCN 2019
Query: 2051 AFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGN-GQKGWPYIQRLLVNLLQFLEPFLRN 2109
FH+L+P K P F +AWLEL+SHR F+ ++L QKGWP +LL++L ++L PFLRN
Sbjct: 2020 TFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRN 2079
Query: 2110 AELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMR 2169
EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMR
Sbjct: 2080 VELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMR 2139
Query: 2170 LPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQK 2229
LPDP TPNLK+D+L EI PRI + + + Q + D+D YLKT P +FLSEL+
Sbjct: 2140 LPDPFTPNLKVDMLSEINIAPRILTNFTGVMPS-QFKKDLDSYLKTRSP-VTFLSELRSN 2197
Query: 2230 LLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAAL 2289
L + + G RYN+ LIN+LV YVG QAI +H + G+ S++ SA +
Sbjct: 2198 LQV----SNEPGNRYNIQLINALVPYVGTQAI-------AHIHNKGSTPSMSTITHSAHM 2246
Query: 2290 DIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVL 2349
DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +LYL+AEAN E IQEQITRVL
Sbjct: 2247 DIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVL 2306
Query: 2350 FERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDD 2409
ERLIVNRPHPWGLLITFIELIKNP + FW+ F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2307 LERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQ 2366
Query: 2410 SM 2411
M
Sbjct: 2367 VM 2368
Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 165/236 (69%), Gaps = 3/236 (1%)
Query: 948 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007
NI+TL+ A ++ E +E P + VQ+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1066 NIDTLLVATDQTERIVEPPEN-VQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQ 1124
Query: 1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 1067
Y+VMKR SIEPNFH LY FLD + + + ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1125 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1184
Query: 1068 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 1125
KNLG WLG +T+ +N+ + +++ KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1185 KNLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIF 1244
Query: 1126 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1181
+P NPWTM I+ +LAE++ +LK+NLKF+IEVL KNL +D+ D+ P +LL+D+ +
Sbjct: 1245 RPQNPWTMGIMNVLAELHQEHDLKLNLKFEIEVLCKNLSMDITDLKPGNLLRDKDK 1300
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 173/625 (27%), Positives = 302/625 (48%), Gaps = 63/625 (10%)
Query: 10 SQIRFLLQSLNEANADSVFRELCQFI-EYGIEGSTMMLQTCMDHLNLHGTGLKNP----Q 64
SQI +L+ +L + N + +E+ + +G E +L+ H++ G G + Q
Sbjct: 11 SQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQ 70
Query: 65 LESVVASVFKYIMDKPNFSTVFSQSV-------KITEINEQLLENLSDVLNLSLPERIGI 117
+ ++ I KPNF + ++ K + + L LS VL LS + + +
Sbjct: 71 TQFLIQECVSLIT-KPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLKLSKVQEVIL 129
Query: 118 GLALSDSENLDALMCGKNFCMAQIERLCANPVPM----NSAEQIQNIIM----------- 162
GLALS+S N D F ++ L + V N Q+I +
Sbjct: 130 GLALSNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEVLHLLLSHLL 189
Query: 163 FLQRSSDL--SKHVDSLMQILSLLQSKDHTQFVLNPVL-PDELHDATSLRDLDLFHECRD 219
F Q+ S + +D+ ++ L ++ VL P+L PD+ RD+ L
Sbjct: 190 FGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDK-------RDI-LMDRILP 241
Query: 220 DDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLS---RILGAIA 276
D D L + E S+ D M E+GYG A +C+ I+ + + E+T S R+LG +A
Sbjct: 242 DSGD--LNKTMMESSLADFMQEVGYGFCASLEECRNIILQYG-VREVTASQVARVLGMMA 298
Query: 277 RTHAGLEDNQNTFSTFTLALGCSTMSDLPPLS----SWNVDVLVKAIKQLAPNTNWIRVV 332
RTH+GL D + + G SD S +WNV+VL+ +K++ PN N+ V
Sbjct: 299 RTHSGLSDGISLQTITNPVGGGGIWSDGKDKSDSSQAWNVEVLIDVVKEVNPNLNFKEVT 358
Query: 333 ENLDYEGFYIPTEEAFSFFM-SVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPP 391
LD+ GF I + + + + E FP+ + WK+ EGQLSF+++++ SP
Sbjct: 359 YELDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRP-WKHAEGQLSFIQHSLLSP- 416
Query: 392 EVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYP 451
EVF FA + +D + + W LDL++ L +LSE+GH + + +P
Sbjct: 417 EVFCFADNPCHTVAIDTLKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFP 476
Query: 452 LKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI-WH---VNPNI-- 505
+K CP+ML+L + I+T+++ +++E+ + P+ + + ++ +ILH WH +P+I
Sbjct: 477 IKHCPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQ 536
Query: 506 -----VLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVD 560
+ ++ + + RIL++ Q+LK LS +L P F I LA +AS++E +
Sbjct: 537 LIMHSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLK 596
Query: 561 LEKWLSINLSTYKDVFFEECLKFVK 585
L+KWL+ + + + F + C+ F+K
Sbjct: 597 LDKWLTDKIREHGEPFIQACVTFLK 621
Score = 167 bits (423), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 662 SEGYADDIEAEANSYFHQMFSG----QLTIEAMVQMLARFKESSVKREHSIFECMIGNLF 717
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 829 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLF 888
Query: 718 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 777
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 889 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 948
Query: 778 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 814
AL++F +RL ++PQYC H+ I+H L +IE
Sbjct: 949 ALDRFKNRLKDYPQYCQHLASIAHFLQFPHHLQEYIE 985
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 118/209 (56%), Gaps = 6/209 (2%)
Query: 1292 IGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYA 1351
+ H+ IN + L H ++ V A++RA++E+V +V RS+ IA T +++V KD+A
Sbjct: 1368 LAPHININVNIPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFA 1427
Query: 1352 MESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIA-----SELLE 1406
++S+E+ + AAH M+ +L +A +TC+EPL SI++ L+NS A E++E
Sbjct: 1428 LDSEESHMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMME 1487
Query: 1407 QAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQ 1466
+A + DN +L C I++ A +KA +D +A + L RKH G + DP +
Sbjct: 1488 EAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFEL-RKHARQEGRRYCDPMVLTY 1546
Query: 1467 GSMGVPEALRPKPGHLSVSQQRVYEDFVR 1495
+ +PE +R K G + Q VYE+F R
Sbjct: 1547 QAERMPEQIRLKVGGVDPKQLAVYEEFAR 1575
>sp|P87112|NOT1_SCHPO General negative regulator of transcription subunit 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not1 PE=1 SV=1
Length = 2100
Score = 481 bits (1237), Expect = e-134, Method: Compositional matrix adjust.
Identities = 415/1463 (28%), Positives = 654/1463 (44%), Gaps = 267/1463 (18%)
Query: 962 PIEAPASE------VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRAS 1015
P+ P +E V D I F INN+S LN K K+ + L Y PWF+ Y+V +R S
Sbjct: 853 PLNVPNAEGEIEESVCDNILFAINNLSQLNFNEKLKDVKDNLTPAYLPWFSHYIVTQRVS 912
Query: 1016 IEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLG 1075
E NF LY KFL+++ S L + + + T + ++ + S E++ LKNLGSWLG
Sbjct: 913 REANFLSLYGKFLEELKSSDLYKIVFRDTLQAILDIMNNNAETLSPSEKTNLKNLGSWLG 972
Query: 1076 KLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAI 1135
+T+ RN+ + ++ K L++E + G + V+PF K+LE SS+ ++PPNPW M I
Sbjct: 973 SITLLRNKPITTLQVSFKDLLLEGIDSGRIDRVLPFVCKVLEKASSSVIFKPPNPWLMGI 1032
Query: 1136 LGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKD---RKREIEGNPDFSNK 1192
L LL E+Y + ++NLKF+IE+L NL V M +I P+ + ++ +K ++E
Sbjct: 1033 LKLLVELYQFADFRLNLKFEIELLLNNLNVKMDNIEPSEMYRNHLVQKADLEK------- 1085
Query: 1193 DVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMED 1252
+LP DV + G T +++QY
Sbjct: 1086 ------------------------ELPEDVLNAEFPDG-TDVITQY-------------- 1106
Query: 1253 EKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQ 1312
+ S Q+ + Q P I NI T +II Q +
Sbjct: 1107 ----IVAASSQITVTDAVAQVFGKPKP--------AIKNI-TQLIIQQSVL--------- 1144
Query: 1313 RVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAG 1372
++ + R++ ++ I +S L+ KD+A ES+ +R+ AA M +LAG
Sbjct: 1145 EIISAVVRRSVG--IAAITTKS----------LLQKDFAAESNPSRLLLAARQMAKTLAG 1192
Query: 1373 SLAHVTCKEPLRGSISSQLRN-SLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDK 1431
+LA VTC+EPL+ + + R +LQ + + QA+ + + NL + +VIE A++
Sbjct: 1193 NLAMVTCREPLQMLMINNFRTIALQDVENVHAAVAQAIDELVSQNLFVASSVIESVASET 1252
Query: 1432 AIQTIDGEIAQQLSLRRKHREGVGS-SFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVY 1490
AI ID EI + R +HR+ + F DP A + +P L+ L+ Q ++Y
Sbjct: 1253 AIAEIDAEIEHMIVERVRHRKTTPNLPFVDPAGAANLHLNLPSVLKLS-SELTPQQFQLY 1311
Query: 1491 EDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVS 1550
E+F RL S S G T S D+ A L N + A T + +
Sbjct: 1312 ENFDRLSLSTIMSNNSFTSLNGLRTDSADSTDALNSNL-----NNTVENEANQTALN-YA 1365
Query: 1551 RPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEP 1610
R + G +A TS+ + A LH E VN T A+
Sbjct: 1366 RNLLIIIGQLFQLAAQMPYTSMQEVPADHE--LH----ELVNQFLTGVAS---------- 1409
Query: 1611 VKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQG 1670
+ P A L + AQ+ ++ D++ +
Sbjct: 1410 INHPIADHVFL----------------------------LCAQECCRILLTDSKSPFILE 1441
Query: 1671 VISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKE 1730
V S + E I C + + A+ V+ LY N SN+L IL+ IR
Sbjct: 1442 VFSAILEYI--CQASTKTAINVS------LYWNFSNDLEKLNLPIILSLIR--------- 1484
Query: 1731 LTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKA-ATEFAISLLQT 1789
G++ S E + H+A+ + + T+FAI LL+T
Sbjct: 1485 -------------------FGILTS-----GEVDYHVARGVRSEQGSGPVTDFAIELLRT 1520
Query: 1790 LVTDESRVVISELHNLVDALAKL-----AAKPGSPESLQQLIEIVRNPAANANASSGATT 1844
V E+ + + N V+++ L + + ++ +QL+E + N + S +
Sbjct: 1521 AVGGENPMALP--GNFVNSITSLYEISESFSGETKQAYEQLVETM-----NKSVSPASEI 1573
Query: 1845 AKD-DKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSN 1903
D D +Q D Q+ ++F W + +N
Sbjct: 1574 LSDLDNKQQLND-----------------------------QIIIVFVSWVHLLRNSATN 1604
Query: 1904 DAACTRYVLQLHQNGLLKGDDMTDRFFR-RLTEVSVAHCLSSEVINPGTLQSPQQSQSLS 1962
D +V QLH+ G+L ++ +FFR L V VA ++ V P
Sbjct: 1605 DETKAAFVYQLHKQGILSEPELCIQFFRCNLEAVLVAFLEAASVNAPD------------ 1652
Query: 1963 FLAIDIYAKLMLSILKCCP-VEQG--SSKIFLLSKILTVTVKFILKDAEEKKASF-NPRP 2018
+ +D YA L+++++K +G SSK L KI+ + + + + A F + +
Sbjct: 1653 YFNVDAYASLLVNVVKYTEGSTEGTVSSKSVLFRKIIALIIG-VFAELHNSMAEFVHQKT 1711
Query: 2019 YFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMP 2078
+FRLF + L ++ V + I S F +QP PAF+FAWL L+SH +P
Sbjct: 1712 FFRLFSSILSELDDAKDVLESCFVDIYSVILECFLAIQPRSFPAFTFAWLSLISHSYLLP 1771
Query: 2079 KLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFL 2138
K+L+ N K +L++ L+FL+ L++ + LY G LR++LVLLHDFP FL
Sbjct: 1772 KVLLVNNDKINDLFSEILMSFLKFLD--LKDDIDKAQFKLLYNGFLRIILVLLHDFPGFL 1829
Query: 2139 CDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDA 2198
+ + IP C+Q+RN++LSAFP ++ LPDP LK+ LPE+ P I + V A
Sbjct: 1830 ATHCYQLIPYIPLECVQLRNMVLSAFPSDLHLPDPFAQGLKVGRLPEVTRAPLISNSVSA 1889
Query: 2199 ALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGM 2258
+L D++ + +P KLLL + T+ N N +L +
Sbjct: 1890 SLEKFASALDLEACFSSSKPAEV------AKLLLEVYSSQDTPTKLN-EWANYFMLCLIR 1942
Query: 2259 QAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYP 2318
A TR S A+ S + V I T+ + D++ RY L A ANQLRYP
Sbjct: 1943 HA-----TRDSPAKQAPQFQSKSPECV-----IISTMNRSCDSKCRYFLLTAIANQLRYP 1992
Query: 2319 NNHTHYFSFVLLYLYAEANQE----IIQEQITRVLFERLIVNRPHPWGLLITFIELIKNP 2374
++HT+Y S LYL+ ++ +I+EQ+T VL ER+I NRPHPWGLLITF EL+KN
Sbjct: 1993 SSHTYYASCCFLYLFKSSSNNPQELLIKEQMTTVLLERIICNRPHPWGLLITFTELLKNE 2052
Query: 2375 RYNFWNQSFIRCAPEIEKLFESV 2397
YNFW +I+ EI +LF+S+
Sbjct: 2053 DYNFWKHPYIKRNDEICRLFDSL 2075
Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 158/560 (28%), Positives = 278/560 (49%), Gaps = 46/560 (8%)
Query: 309 SWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYAC---QEPFPL 365
+W+ ++ KAI N NW ++ D F I + F +++ A Q F L
Sbjct: 292 AWDTVLMGKAIVSSFENLNWEAMLSMFDNPKFMITGTPSLVLFFTIFTNAYKLRQTNFTL 351
Query: 366 HAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQ-ANHAWL 424
+ +W+N QLS + + + SP +F P V +V LK S + N+A +
Sbjct: 352 DFL-WVLWRNPLPQLSIISHIILSPTSMFDIREFNVN-PVV-SVDSLKDYSEELVNYAKI 408
Query: 425 -------CLDLLDVLCQL-SEMGHASFARSMLEYPL--KQCPEMLLLGMAHINTAYNLIQ 474
C++L+ +L +L SE+ ++ S+ L K E+LLLG + A+N +Q
Sbjct: 409 YEKSNLNCIELVQILLRLLSEV--VTYETSLFLNFLDEKVSAELLLLGTLQLPLAWNPVQ 466
Query: 475 YEVSFAVFPMIIKSTMSNGMI-LHIWHVNPNIVLRGFVDAQNMEPDCTI-RILEICQELK 532
++F + + + + I NP L F+ + ++ ++ +++E E
Sbjct: 467 ESLAFQWCSDFFSNFKEHKFVFVRIERTNPQF-LFAFLRSLWLKDSSSVNQVVEFIIEND 525
Query: 533 ILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKD-----VFFEECLKFVKEV 587
S + + P+ FA+ +A +A+ ++ + + WL + ++D VF E L F+
Sbjct: 526 FTSHIGNIQPNRFALEIAALAAARKALSFQDWLDKKMLEFEDADGLNVFLVEVLDFLMS- 584
Query: 588 QFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDS 647
+ ++ S Q +L++ + + V+L L ++ + S ++SE I+ Q + L
Sbjct: 585 RAALQKNESEQ--KEESVVLSI--DTVNVLLTTLMDNVSI--SEEVSEHIKDVQILCLQV 638
Query: 648 TPRLQN-GEAADS-----STSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESS 701
PRL + G DS +T+ ++ D+E+E SYF ++ +++I +V L FK+S
Sbjct: 639 YPRLFSLGHDRDSIVIATNTTNSFSPDVESEVESYFQALYERRISIGKIVLTLQNFKKSE 698
Query: 702 VKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLD 761
R+ +F C+ +LF+EYRFFP YP L + AVLFGS+I+ +L++ + LG+ALR V
Sbjct: 699 NPRDLDLFACLQHSLFDEYRFFPDYPLEALALTAVLFGSLIQFELLSFVPLGVALRYVYQ 758
Query: 762 ALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARIS 821
AL P DSKMF FG +AL QF ++L ++ YCN IL I L+ ++ I +A
Sbjct: 759 ALLMPTDSKMFRFGMQALVQFQEKLPKYINYCNLILGIPSLQLVRPDIYDSIREMIASNE 818
Query: 822 SGHLESD------GASNPAA 835
+ +E D +NPA+
Sbjct: 819 NTEVEKDKLDSFSALANPAS 838
>sp|P25655|NOT1_YEAST General negative regulator of transcription subunit 1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CDC39 PE=1 SV=3
Length = 2108
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 199/759 (26%), Positives = 363/759 (47%), Gaps = 95/759 (12%)
Query: 1665 EAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVC 1724
+ +++ +I ++ I + +D+ AL V+Q V L+ + + L +L + +
Sbjct: 1393 QNQIKTIIFQILTFIAKSAQKDQLALKVSQAVVNSLFATSESPLCREVLSLLLEKLCSLS 1452
Query: 1725 KLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKA--ATEF 1782
+ K++ W++Y+ + RKFN + L+ L++ E + L+ +NK +TEF
Sbjct: 1453 LVARKDVVWWLVYALDSRKFNVPVIRSLLEVNLIDATELD---NVLVTAMKNKMENSTEF 1509
Query: 1783 AISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGA 1842
A+ L+Q V + +++ + + L LA+ + + N
Sbjct: 1510 AMKLIQNTVLSDDPILMR--MDFIKTLEHLAS------------------SEDENVKKFI 1549
Query: 1843 TTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGS 1902
+D K + + T E++ ++F EW ++ + +
Sbjct: 1550 KEFEDTKIMPVRKGTKTTRT---------------------EKLYLVFTEWVKLLQRVEN 1588
Query: 1903 NDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLS 1962
ND T ++ QL + G++ D F + E+SV+ S+ +
Sbjct: 1589 NDVITTVFIKQLVEKGVISDTDNLLTFVKSSLELSVSSFKESDPTDE------------V 1636
Query: 1963 FLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRL 2022
F+AID L++ +L + + + ++ + I +V V KD ++ +FN RPYFRL
Sbjct: 1637 FIAIDALGSLIIKLLILQGFKDDTRRDYI-NAIFSVIVLVFAKDHSQEGTTFNERPYFRL 1695
Query: 2023 FINWLLDMSSLDP-----VADGSNFQIL----SAFANAF----HVLQPLKVPAFSFAWLE 2069
F N L + +++ ++D S Q L S F N F H LQP P FSFAW+
Sbjct: 1696 FSNILYEWATIRTHNFVRISDSSTRQELIEFDSVFYNTFSGYLHALQPFAFPGFSFAWVT 1755
Query: 2070 LVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLV 2129
L+SHR +P +L + GW + L+++L +FL+ + + V +YKGTLRV+L
Sbjct: 1756 LLSHRMLLPIMLRLPNKIGWEKLMLLIIDLFKFLDQYTSKHAVSDAVSVVYKGTLRVILG 1815
Query: 2130 LLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDP 2189
+ +D P FL + H+ + +PP+ Q++N+ILSA P+NM +P+P +L ++ +P ++
Sbjct: 1816 ISNDMPSFLIENHYELMNNLPPTYFQLKNVILSAIPKNMTVPNPYDVDLNMEDIPACKEL 1875
Query: 2190 PRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNV--- 2246
P +F D + ++ VD+YL+ P +S L + + + G Y+
Sbjct: 1876 PEVF--FDPVIDLHSLKKPVDNYLRI--PSNSLLRTILSA-IYKDTYDIKKGVGYDFLSV 1930
Query: 2247 --PLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGR 2304
LI ++VL+VG++A + + +S+A +S T LIQ+ E +
Sbjct: 1931 DSKLIRAIVLHVGIEAGIEYKRTSSNAVFNTKSSYYTLLF---------NLIQNGSIEMK 1981
Query: 2305 YLFLNAAANQLRYPNNHTHYFSFVLLYLYA--EANQEI--IQEQITRVLFERLIVNRPHP 2360
Y + + QLRYPN HT++FSFVL+ ++ E N + +QE I R +R+IVN+PH
Sbjct: 1982 YQIILSIVEQLRYPNIHTYWFSFVLMNMFKSDEWNDQKLEVQEIILRNFLKRIIVNKPHT 2041
Query: 2361 WGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVAR 2399
WG+ + F +LI N N + F++ PEI+ + + + +
Sbjct: 2042 WGVSVFFTQLINNNDINLLDLPFVQSVPEIKLILQQLVK 2080
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 146/267 (54%), Gaps = 10/267 (3%)
Query: 910 SSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASE 969
S AQ + V A + + +RP + + KF + + + E +
Sbjct: 733 SQAQVYQSIVEAATLANAPKERSRPVQEMIPLKFFAVDEVSCQINQ--------EGAPKD 784
Query: 970 VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLD 1029
V +K+ F++NN++ N+ K E + L Y+ WF+ Y+V +RA EPN+HDLY K +
Sbjct: 785 VVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIV 844
Query: 1030 KVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRARE 1089
+ S L++ +V T VLL ++ + ++ LKNL SWLG +T+ N+ ++ +
Sbjct: 845 AMGSGLLHQFMVNVTLRQLFVLLSTK--DEQAIDKKHLKNLASWLGCITLALNKPIKHKN 902
Query: 1090 IDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLK 1149
I + ++IEAY++ + V+PF +KIL+ S ++PPNPWT+ IL LL E+ N K
Sbjct: 903 IAFREMLIEAYKENRLEIVVPFVTKILQRASESKIFKPPNPWTVGILKLLIELNEKANWK 962
Query: 1150 MNLKFDIEVLFKNLGVDMKDITPTSLL 1176
++L F++EVL K+ + K + P++ +
Sbjct: 963 LSLTFEVEVLLKSFNLTTKSLKPSNFI 989
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 651 LQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFE 710
L NG+ A G +DIE E +Y +M+SG+L I+ ++++L R ++S + R+ +F
Sbjct: 585 LANGDIA------GINNDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFT 638
Query: 711 CMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSK 770
C+ + E FF YP L +VLFGS+I QL+ L +A R ++ ++P +SK
Sbjct: 639 CITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRGFVLDVAFRIIMRFAKEPPESK 698
Query: 771 MFVFGTKALEQFVDRLIEWPQYCNHILQ 798
MF F +A+ F RL E+PQYC +L+
Sbjct: 699 MFKFAVQAIYAFRIRLAEYPQYCKDLLR 726
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 106/191 (55%)
Query: 1303 TALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNA 1362
T H +RV +A+ ++++EI+ +V++S IA TT +++LKD+A E DE+++ A
Sbjct: 1080 TIFVTHPDLKRVFQMALAKSVREILLEVVEKSSGIAVVTTTKIILKDFATEVDESKLKTA 1139
Query: 1363 AHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCA 1422
A +MV LA SLA T EPL+ I S +++ L S + + N+N+ +
Sbjct: 1140 AIIMVRHLAQSLARATSIEPLKEGIRSTMQSLAPNLMSLSSSPAEELDTAINENIGIALV 1199
Query: 1423 VIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHL 1482
+IE+A+ DK+ Q + ++ Q +++RR H+E F S+ +PE L K +
Sbjct: 1200 LIEKASMDKSTQDLADQLMQAIAIRRYHKERRADQPFITQNTNPYSLSLPEPLGLKNTGV 1259
Query: 1483 SVSQQRVYEDF 1493
+ Q RVYE+F
Sbjct: 1260 TPQQFRVYEEF 1270
>sp|Q8Y5X6|AROB_LISMO 3-dehydroquinate synthase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=aroB PE=3 SV=1
Length = 365
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 17/89 (19%)
Query: 706 HSIFECMIGNLFE------EYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGV 759
H + + MIGN ++ + +FF PER+LR F +IKH L++ LTL LR +
Sbjct: 147 HPLGKNMIGNFYQPEAVIYDTQFFATLPERELRSG---FAEMIKHALISDLTL---LRAL 200
Query: 760 LDALRKPADSKMFVFGTKALEQFVDRLIE 788
+D +P D F TK L F+ R IE
Sbjct: 201 MDTFTEPKD-----FYTKDLTPFLQRGIE 224
>sp|Q8TSP6|SYC_METAC Cysteine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=cysS PE=3 SV=1
Length = 473
Score = 42.0 bits (97), Expect = 0.056, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 2258 MQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRY 2317
++A+ +L+T+ HA N+ AL +F+ L + + L+L A N+
Sbjct: 349 LKALPELETQFRHALEDDFNTP-------RALTVFRELSRTAN-----LYLEAGKNRKVL 396
Query: 2318 PNNHTHYFSFV-LLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRY 2376
HT Y F +L L+A+A +E I E++ R++ ER + WG T E I+ Y
Sbjct: 397 EKVHTLYRKFSDVLGLFAQAGKEEIPEEVFRLVEEREAARKKKDWGTSDTLREKIRTLGY 456
Query: 2377 NFWNQSFIRCAPEIEKLFES 2396
++ + P ++K ES
Sbjct: 457 IIQDK---KEGPNVKKAEES 473
>sp|A6LSY5|HEM3_CLOB8 Porphobilinogen deaminase OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=hemC PE=3 SV=1
Length = 291
Score = 40.0 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 1326 IVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMV-----ASLAGSLAHVTCK 1380
+ G + VS+A K L +KD + E R A H M S +A +T +
Sbjct: 39 VTEGDRKLDVSLAKIGGKGLFVKDIEIALLEKRADGAVHSMKDVPYELSHEFEIAAITER 98
Query: 1381 EPLRGSISSQ----LRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIE---QAATDKAI 1433
E +R + S+ + +G I + + +A QL N DL I Q +K
Sbjct: 99 EDIRDVLISKDNIPFKELRKGAIIGTSSIRRACQLKLMRN-DLDIVPIRGNVQTRLEKMK 157
Query: 1434 -QTIDGEIAQQLSLRRKHREGVGSSFFDPNIY----AQGSMGV 1471
Q +DG I L+R + E + + +FDP ++ AQG++G+
Sbjct: 158 EQNLDGIILASAGLKRLNEEDIITEYFDPKVFIPAVAQGALGI 200
>sp|Q7D5C5|PPE62_MYCTU Uncharacterized PPE family protein PPE62 OS=Mycobacterium
tuberculosis GN=ppe62 PE=3 SV=1
Length = 582
Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 1498 WQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQG------YSSSAGSTGF-DAVS 1550
W N + A +AGSL ++G A + G G GN G +++ GS+GF + S
Sbjct: 465 WSNSGLTNTGAFNAGSL-NTGFGAVGTGSGPNSGFGNAGTNNSGFFNTGVGSSGFQNGGS 523
Query: 1551 RPSDVASGTTESTSAGFLSTSLVHIGAADGGILHN 1585
S + + +AGF +T +G A+ G+L++
Sbjct: 524 NNSGLQNAVGTVIAAGFGNTGAQTVGIANSGVLNS 558
>sp|Q09693|DPO4_SCHPO DNA polymerase type-X family protein pol4 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pol4 PE=3 SV=1
Length = 506
Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 325 NTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAV 368
N N ++ ++N+D EG PT + + + + + +YACQ PL V
Sbjct: 135 NNNEVKSIDNVDQEGSVYPTTKEYPYVLEIPRYACQRKTPLKCV 178
>sp|A5DUP0|U507_LODEL UPF0507 protein LELG_01076 OS=Lodderomyces elongisporus (strain ATCC
11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239)
GN=LELG_01076 PE=3 SV=1
Length = 1260
Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 942 KFGSALNIETLVAAAERRETPIEAPASE--VQDKISFIINNISALNVEAKAKEFTEILKE 999
K+G N+E+++A R + E P++ + D +SF+ + NVE K+ E
Sbjct: 781 KYGRLENLESILAD-NRLDFLAEDPSTHYNIFDYLSFLAGRYAKENVEKIEKKLIEFYFS 839
Query: 1000 QYYPWFAQY-MVMKRASIEPNFHDLYLKF 1027
Y+P+ A Y +V +P+ D Y+ +
Sbjct: 840 HYFPFEAHYKLVALNGKYDPSTRDWYIYY 868
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 843,515,086
Number of Sequences: 539616
Number of extensions: 35046184
Number of successful extensions: 104562
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 103182
Number of HSP's gapped (non-prelim): 1090
length of query: 2421
length of database: 191,569,459
effective HSP length: 134
effective length of query: 2287
effective length of database: 119,260,915
effective search space: 272749712605
effective search space used: 272749712605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)