Query 000073
Match_columns 2421
No_of_seqs 219 out of 295
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 16:42:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5103 CDC39 Cell division co 100.0 3E-296 6E-301 2699.0 107.6 1918 6-2408 25-1991(2005)
2 KOG1831 Negative regulator of 100.0 2E-290 4E-295 2714.7 92.7 1470 532-2409 82-1578(1591)
3 PF04054 Not1: CCR4-Not comple 100.0 4E-115 9E-120 1069.6 30.7 366 2025-2400 1-379 (379)
4 PF12842 DUF3819: Domain of un 100.0 4.6E-46 9.9E-51 405.2 17.7 145 1308-1452 1-147 (147)
5 KOG1831 Negative regulator of 96.9 1.2 2.6E-05 62.7 34.6 293 1010-1435 658-951 (1591)
6 smart00543 MIF4G Middle domain 91.8 1.3 2.7E-05 51.3 11.6 180 972-1162 2-196 (200)
7 KOG1467 Translation initiation 82.1 4.1 8.9E-05 52.7 8.4 127 1318-1451 241-387 (556)
8 PF02854 MIF4G: MIF4G domain; 80.3 5.2 0.00011 46.3 8.1 108 973-1081 3-117 (209)
9 PF02847 MA3: MA3 domain; Int 39.4 1.9E+02 0.0042 30.7 9.7 71 686-765 17-87 (113)
10 COG5088 SOH1 Rad5p-binding pro 34.0 86 0.0019 33.1 5.5 89 984-1077 15-108 (114)
11 PF08542 Rep_fac_C: Replicatio 33.3 1.1E+02 0.0023 31.3 6.4 61 7-70 3-63 (89)
12 KOG3091 Nuclear pore complex, 28.3 3.2E+02 0.0069 36.6 10.5 27 1347-1373 404-430 (508)
13 cd00686 Terpene_cyclase_cis_tr 27.2 99 0.0021 39.5 5.7 61 2088-2167 127-199 (357)
14 smart00544 MA3 Domain in DAP-5 21.6 4E+02 0.0086 28.4 8.4 71 686-765 17-87 (113)
No 1
>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
Probab=100.00 E-value=2.6e-296 Score=2698.96 Aligned_cols=1918 Identities=27% Similarity=0.401 Sum_probs=1495.8
Q ss_pred CCcHHHHHHHHHhhhhhchHHHHHHHHHHHH-hccchhhHHHHhhhcccccCC-CCCCCch---HHHHHHHHHHHhhcCC
Q 000073 6 STVPSQIRFLLQSLNEANADSVFRELCQFIE-YGIEGSTMMLQTCMDHLNLHG-TGLKNPQ---LESVVASVFKYIMDKP 80 (2421)
Q Consensus 6 ~~~~~qi~~Lv~~l~k~n~~~~~~el~qlv~-~G~ea~~~~L~~~l~~~~~~~-~~~k~~~---~~~Ll~~~~~~ll~kp 80 (2421)
+.+-+||.+|++.|++.|||+.-+||.|+++ ...+-.++++|.++.--.++- +.+|... --++|-+||+.++.|-
T Consensus 25 sIV~AQI~fLlsTL~eDqydt~~eqIRqlinkna~~vY~~~~rRLiq~nS~~If~tGK~~~~~a~~~~LL~Elks~~~Kr 104 (2005)
T COG5103 25 SIVKAQILFLLSTLREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKKR 104 (2005)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHccCCcHHHHHHHHHHhcccchhhhccCcccchhHHHHHHHHHHHhhhhhh
Confidence 4577999999999999999999999999997 999999999999996443311 2355444 4578889999999865
Q ss_pred CccchhhhhccCc--ccCHHHHHHHHhhcCCCchhHHHHhhhhccCCChHHHHHHHHHHHHHHHHHhcC----CC--CCC
Q 000073 81 NFSTVFSQSVKIT--EINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCAN----PV--PMN 152 (2421)
Q Consensus 81 nf~T~lc~A~~~~--~~~~~fl~~ls~~L~Ls~~qev~~gLAL~~s~n~e~~~~g~~f~~~~l~el~~~----~~--~~~ 152 (2421)
. ..|+.+. ++=++|-=+++ +||.++ .+++....+. | |. +++
T Consensus 105 ~-----sD~Is~~dsevFed~~FQ~s------------iGlT~S-------------Ll~n~Fqs~~-Nq~~~~t~qqS~ 153 (2005)
T COG5103 105 F-----SDAISGSDSEVFEDFHFQFS------------IGLTTS-------------LLKNTFQSLL-NQLSDPTQQQSI 153 (2005)
T ss_pred h-----hhHhhcchhhhhcchhhhhh------------hhhhHH-------------HHHHHHHHHH-hhccchHhhhhc
Confidence 4 6666654 22223311222 344433 2222222222 1 11 111
Q ss_pred CHHHHHHHHHHHhcccchhh-hHHHHHHHHhhhcCCCCCCccccCCCCCccccccccccccccccCCCCchHHHHHHhhc
Q 000073 153 SAEQIQNIIMFLQRSSDLSK-HVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEK 231 (2421)
Q Consensus 153 s~e~lh~il~~l~~~~gls~-~~~~f~~~l~~~~p~~~~~~~l~Pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (2421)
.-+-+ -.|++ |-.. ...-|.+.+...--+ +.+... +.+.++.+- +.+..+
T Consensus 154 d~NDl----d~lr~--~~Tdydr~~f~q~i~~~Le~-------------------s~~~~~-~~~p~e~~~-~~l~~~-- 204 (2005)
T COG5103 154 DKNDL----DLLRE--GTTDYDRKIFRQEIKDVLEK-------------------SDPLTA-LFGPREVDR-SFLDDA-- 204 (2005)
T ss_pred ccchH----HHHhc--CCchHHHHHHHHHhHHHHHc-------------------CCchhh-hcCcchhhH-HHHHHH--
Confidence 00000 01111 1110 011122211111000 001010 000011100 011111
Q ss_pred cCcHHHHHHhhCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccCCccCccchhhHhhhccCCCCCCCCCCCCCC
Q 000073 232 EMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWN 311 (2421)
Q Consensus 232 ~~~l~~~i~e~G~~~t~s~~~c~~~L~~~~~l~e~~va~~l~~mart~sgl~~~~~~~~~~~~~~~~~~~~~~~~~~~wn 311 (2421)
..++|+-.+.-.+.|||+.+-.|+.- ++.+.||
T Consensus 205 ---------------------l~~Il~P~~~~~~~dvar~il~~~~~--------------------------~D~~~w~ 237 (2005)
T COG5103 205 ---------------------LQRILRPRREVVPEDVARAILFMADF--------------------------PDRGEWN 237 (2005)
T ss_pred ---------------------HHHHhCCCccCCcchHHHHHhhhhhc--------------------------ccccccc
Confidence 23445534468889999984444422 2256799
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHhcCCCCCCCCChhhHHHHHHHHhh-hcCCCccccccccCcccCchh-hHHHHHHHhhC
Q 000073 312 VDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKY-ACQEPFPLHAVCGSVWKNTEG-QLSFLRYAVAS 389 (2421)
Q Consensus 312 ~~vlv~alk~~~p~~nW~~V~~~lD~~~f~i~d~~~l~ll~~~~~~-~~~~~fpi~~l~~~~W~N~~~-Qlsfl~~~l~~ 389 (2421)
.-..+.+++..+..+||.+|+.+||.+.|.|+....+..++.+|-. +.+.+||.+.+|. .|||... |+++.-|..+.
T Consensus 238 ~v~~~~a~~s~~e~iNW~~v~s~f~~~~F~i~~l~p~~v~~~c~f~~~~~~~v~~eff~~-~Wkn~~~~~l~i~lhi~s~ 316 (2005)
T COG5103 238 LVAIVGAMKSNLEEINWRDVYSCFLDVNFSIWTLEPLYVIIDCWFYISGIITVPYEFFFK-RWKNERAQILFIRLHIESD 316 (2005)
T ss_pred hHHHHHHHHhhhhhcCHHHHHHHhcCcceeeccCcchHHHHHHHHHHhcCCCccHHHHHH-HhcchhhhhHhhheeeeec
Confidence 9999999999999999999999999999999977666666555554 4567899999994 9999999 55555666677
Q ss_pred CCcccccCc-CccccccccCCCCccccc-cccccccchHHHHHHHHHhhhcCchHHHHHHhhhhhhcChhHHHHHhhcc-
Q 000073 390 PPEVFTFAH-SARQLPYVDAVPGLKLQS-GQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHI- 466 (2421)
Q Consensus 390 p~~~f~f~~-~~r~~v~~d~~~~~~~~~-~~~~~~W~sldl~e~L~~Lae~~~~~~v~~l~e~p~~~~pe~lllgl~~i- 466 (2421)
+...|+... .+.+.|..+...+.+... -...+++||.+|++++. +++.....-..++| +...||++.+||..+
T Consensus 317 ~~~~fd~~Nv~~tr~Vs~~~~~~~~~~ny~~~~snlNc~el~Q~~~-l~~~p~i~y~~~lF---lN~~pE~~~a~L~~~~ 392 (2005)
T COG5103 317 EKRTFDYSNVFFTRIVSIEDSRGHRFKNYMGYESNLNCVELFQCIM-LGSLPLIEYIARLF---LNKSPEWCAAGLGFVQ 392 (2005)
T ss_pred ccchheecccceeEEEeeecCchHHHHHHHHHhcccCHHHHHHHHH-hccchHHHHHHHHH---hccCHHHHHHHHHHhh
Confidence 677788754 344555544433333222 24789999999999994 33332222233466 789999999999654
Q ss_pred ----CcchhHHHHHHHHhhhHHHHcC-CCchHHHHHHHhhCChhHHHHHHHhhhcCCccHHHHHHHHHHhhhHHHHhhcC
Q 000073 467 ----NTAYNLIQYEVSFAVFPMIIKS-TMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMI 541 (2421)
Q Consensus 467 ----~~~~~~l~~ell~~lf~~fl~~-~~~~~vi~~lW~~~~~~~~~~~~d~y~~d~~~l~rIldvaqelk~L~~lL~~~ 541 (2421)
+-.||+.+.+.....+-+++.| .++++|+..+...+|+++++...-...+|...++|++|+.-|+|.|+.+.|..
T Consensus 393 ~~f~~L~~N~v~~s~if~~ll~~f~n~~p~sFvfv~~~rT~p~~~~~~~r~v~~kd~~pv~~~l~~~le~~~l~~V~n~l 472 (2005)
T COG5103 393 PKFSPLAWNPVQESRIFEELLMGFANGAPNSFVFVVLFRTHPEMMLQKSRLVLAKDGIPVSRLLDIFLEHKMLPLVSNLL 472 (2005)
T ss_pred hhhhhhhcCchHHHHHHHHHHHHHhcCCCCceEEEEEEecCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCchhhhhhcC
Confidence 4579999999888887777755 58899999999999999999998778999999999999999999999999999
Q ss_pred CchhHHHHHHHhhcccccCHHHHHHHHhhcCcc-h----HHHHHHHHHHHHhhcccccccCCCCCCCcccccccchhHHH
Q 000073 542 PSPFAIRLAVIASQKELVDLEKWLSINLSTYKD-V----FFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPV 616 (2421)
Q Consensus 542 pf~f~idLA~lAsrre~l~LekWL~~~l~~~~~-~----f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~~tv~~ 616 (2421)
|..|++|+++|++.|+.++|..|+..++....+ + |+...++||+.|+.......+.+ ..+-+ ++..|+-.
T Consensus 473 P~~f~~~i~vL~~aR~~l~~~~Wl~~~~~~~~dad~~NVfvv~~~~~l~sk~s~~k~p~~q~---ee~~~--f~~~tvie 547 (2005)
T COG5103 473 PPEFCFDIIVLSSARDHLNLGIWLSNNLTTRKDADGLNVFVVSLVQYLDSKVSKHKEPEKQK---EESVM--FPLNTVIE 547 (2005)
T ss_pred CHHHHHHHHHHHHHHHhcchhhhcccCceeeecCCcccchHHHHHHHHHHHHhhcCChhhhc---cccee--eehhhHHH
Confidence 999999999999999999999999999987665 3 99999999999997543211110 11223 34455555
Q ss_pred HHHHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCCC-CCC-----CCCCCChhhHHHHHHHHHHHHhccCCCHHHH
Q 000073 617 ILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEA-ADS-----STSEGYADDIEAEANSYFHQMFSGQLTIEAM 690 (2421)
Q Consensus 617 lL~~L~~~~~~~~s~~l~e~l~~v~~~~i~~~PrL~n~~~-~d~-----~~~~~~~~dIE~Ean~yfqkmYs~eisI~~i 690 (2421)
+|..+..... +-.+.++.++..|++.||||++.+- +|+ .+.++++.|||+||.+|||+||+++++|+++
T Consensus 548 il~t~~~~V~-----q~~~~~k~~~~~~l~~fprli~~G~~~Ds~v~at~tt~s~~~dIE~E~~sy~q~~y~~~~~I~~~ 622 (2005)
T COG5103 548 ILGTFTKAVE-----QYIRILKPETVVVLNEFPRLIPHGLRRDSIVAATNTTRSKEIDIEEEASSYIQQIYNSQRGIESS 622 (2005)
T ss_pred HHHHhHHHHH-----HHHHhcCcceEehHhhhhhhccCCCCcchhhhccCcccccCccHHHHHHHHHHHHHHhcccHHHH
Confidence 5554433221 1156778888899999999999874 444 3567899999999999999999999999999
Q ss_pred HHHHHHhhcCCccccchhHHhHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCCCCCc
Q 000073 691 VQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSK 770 (2421)
Q Consensus 691 v~~L~r~K~S~~~rdqdiFaCMih~LFdEYrFf~~YP~~eL~~TAvLFG~lI~~~Lv~~~~L~iALr~VLeAlr~p~~Sk 770 (2421)
|+.||+|++|++|||+|+|+|+.|.|||||+||++||+++|++|||||||||+++|+++.+|++|+|||..++++|++||
T Consensus 623 I~~l~~f~~senprd~elfsci~hal~~ey~ff~dyPl~ALaltavLfGslI~f~ll~~~~L~vA~ryI~~~lk~P~~sk 702 (2005)
T COG5103 623 INQLKEFLRSENPRDKELFSCIFHALLEEYGFFYDYPLSALALTAVLFGSLIKFRLLPKPYLRVAIRYIKGSLKHPENSK 702 (2005)
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhccCCCCCCCCCCCcccccccccccCCCCCc
Q 000073 771 MFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEV 850 (2421)
Q Consensus 771 Mf~FGiqAL~qF~~RL~EwPqyC~~Llqip~L~~~~p~l~~~ie~~l~~~~~~~~~~~~~~~~~~~q~~~~q~~~~~~~~ 850 (2421)
||+||+|||++|+.||++||+||+.++.||.|+. .|++|+.|-++.. ..+. .+
T Consensus 703 mf~Fg~qal~~Fq~kLp~Yp~yc~~vl~ip~l~~-r~~iy~sivem~s----~eNt-------~~--------------- 755 (2005)
T COG5103 703 MFSFGFQALEVFQEKLPSYPSYCSEVLEIPTLNN-RILIYKSIVEMDS----NENT-------EV--------------- 755 (2005)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHhccccccc-chHHHHHHHHHHh----ccCC-------cc---------------
Confidence 9999999999999999999999999999999965 8999998855542 1100 00
Q ss_pred cCCcccccccchhhhHHhhhhccccccccccccccCCCCCCCCcccCCCCCccCCCCCCchhhhhcccCCCccccccCCC
Q 000073 851 SGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSG 930 (2421)
Q Consensus 851 ~~~~~~~~~~q~~~~~~~qq~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 930 (2421)
++ ++++.|. ++.. .
T Consensus 756 ---------------------------Ek-------a~p~~pm---~pl~-----------------------------~ 769 (2005)
T COG5103 756 ---------------------------EK-------ANPTHPM---LPLE-----------------------------D 769 (2005)
T ss_pred ---------------------------cc-------cCCCCcc---cchh-----------------------------h
Confidence 00 0111111 1000 0
Q ss_pred ccCCCCCccccccccccchHHHHHHhhhcCCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHH
Q 000073 931 FARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMV 1010 (2421)
Q Consensus 931 ~~~p~~~~~~~~~~~~~nI~tL~~~~e~~~~~~e~Ppe~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~YLV 1010 (2421)
|++- .-+-+...|--++|+..+|+|.+||++..|+..|++|+|+.|+|.|.+||+.|||
T Consensus 770 fv~~---------------------~v~c~~n~Eg~~~evV~~iLFaiNNl~~ln~n~ki~~lk~~Ltp~y~~wfs~y~v 828 (2005)
T COG5103 770 FVRL---------------------IVKCDANNEGRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVGWFSIYMV 828 (2005)
T ss_pred hhee---------------------EeccccCccccHHHHHHHHHHHhhhHHhhhccchHHHHHHhcCcccccceeeEEE
Confidence 0000 0000122344567788889999999999999999999999999999999999999
Q ss_pred hhhcccCCcchHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcccccCCC
Q 000073 1011 MKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREI 1090 (2421)
Q Consensus 1011 ~kRasiEPN~H~LYl~fLd~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~l 1090 (2421)
.+|++.|||||+||.++++.++++.||+.+.+.|.+.++.||+...- +.+|+++|||||+|||+|||||||||+|+++
T Consensus 829 tqR~~~e~n~~~ly~kvve~lgS~dly~~~~r~TL~~l~~ll~~~~e--s~~ekk~lKnLgswLG~ItLa~NkpIt~~q~ 906 (2005)
T COG5103 829 TQRSTAEENCRRLYGKVVERLGSKDLYLRFSRKTLEFLKMLLDYRCE--SPSEKKVLKNLGSWLGRITLAKNKPITSEQF 906 (2005)
T ss_pred EeeccccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhcccc--ChHHHHHHHHHHHHHhHHHHhhcCccccccc
Confidence 99999999999999999999999999999999999999999997644 8899999999999999999999999999999
Q ss_pred ChhhHHHHHHhcCceEEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCcccc
Q 000073 1091 DPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDI 1170 (2421)
Q Consensus 1091 d~K~LLlEaY~~g~Li~VIPFVcKVLe~~~~SkVFkPPNPWtm~IL~lL~Ely~~~~LKLnLKFEIEVL~K~L~ldl~di 1170 (2421)
|||++|+|||+.||+..|||||||||++++.|+||||||||+||||+||.|||+++++||+||||||+|+|+||++++.|
T Consensus 907 ~Fk~~lve~~~~~Ri~~vvpFV~k~L~~as~s~IFkPpNPW~mgILkLL~El~~~a~~~l~lkFEie~Ll~~lnv~~~~i 986 (2005)
T COG5103 907 DFKKFLVESVECRRILFVVPFVSKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLLRHLNVELVPI 986 (2005)
T ss_pred cHHHHHHHHhhcCceEEeehHHHHHHHhcccceEecCCCchHHHHHHHHHHHHhcCcceeehhhhHHHHHHhcceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhh---ccCCCCCCCCCcCCCCCcccCCCCccccCCCCCCCCCCCcCCCCCCCCCcccccccccccccCcC
Q 000073 1171 TPTSLLKDRKRE---IEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSG 1247 (2421)
Q Consensus 1171 eps~~L~~r~~~---~~~~~d~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 1247 (2421)
||++.++++... ++. .+||. -++ .+.|.+ ..+++||.... .++.
T Consensus 987 kPs~~~~n~~V~ks~LEk---------------e~~Ed------vL~-a~~~d~----------~~~~~qyi~~~-sSq~ 1033 (2005)
T COG5103 987 KPSKSLGNHLVLKSRLEK---------------ELPED------VLN-AKFPDG----------TDYLAQYIIED-SSQI 1033 (2005)
T ss_pred ChhhhhCcHHHHHHHHhh---------------hchHH------HHh-hhcccc----------chHHHHHHHHh-hhcc
Confidence 999999876531 110 11110 000 001100 01233432100 0000
Q ss_pred cchhHHHHhhccCCCCCCcccccccccCCCCCCcccccccCCCCCCceEEecccccccccchhhhhhHHHHHHHHHHhhh
Q 000073 1248 TLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIV 1327 (2421)
Q Consensus 1248 ~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~~ip~l~~~~~i~~~l~~~~~~p~Lk~iv~~Ai~rAIrEII 1327 (2421)
..+|. ++. +...| -|.+|++.++|++.+||||+
T Consensus 1034 -TvtD~-va~--------------------------------------~~g~P-------~PaiK~~~Qlal~~SVrEI~ 1066 (2005)
T COG5103 1034 -TVTDL-VAR--------------------------------------HVGSP-------KPAIKNLTQLALDLSVREIC 1066 (2005)
T ss_pred -hHHHH-HHH--------------------------------------HcCCC-------ChHHHHHHHHHHHHHHHHHH
Confidence 00110 111 01111 28999999999999999999
Q ss_pred hhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 000073 1328 SGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQ 1407 (2421)
Q Consensus 1328 ~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si~~~Lr~ll~~~~~~~~~~E~ 1407 (2421)
+.|||||+.||++||+.|++||||||.|+.++..||++||++|||+||+|||+|||++.|.+++|++..++.+....+.+
T Consensus 1067 ~aVVeks~gIAi~Tt~~l~~KDFa~ev~~s~l~~aar~Mv~~La~~La~vT~~EPlk~~i~~n~rs~a~~l~sv~~~~ae 1146 (2005)
T COG5103 1067 GAVVEKSCGIAIQTTMALFKKDFAMEVEKSMLYVAARNMVVNLAKFLALVTAQEPLKACISGNVRSYAMKLCSVLDFSAE 1146 (2005)
T ss_pred HHHHHHhccchhhHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhccHHHHHHHHhhhhhchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887766677888
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcCcccccccccCCCCCCCCCCCCCChhH
Q 000073 1408 AVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQ 1486 (2421)
Q Consensus 1408 ~i~~~vnDNldLac~iIEKaA~EKAi~eIde~l~~~~~~RR~hre~-~~~~f~D~~~~~~~~~~lPe~LrlkpgGl~~~Q 1486 (2421)
++..++++|++.||.+||+|+++|++++|+..|+.++..|||||++ ++.||+||+. +..+++||++|+++-||+||+|
T Consensus 1147 ~vd~~~~eN~~va~~lIe~a~~~k~~~~i~aei~h~Iv~R~~Hrktt~n~PFvd~aa-a~~slnLps~L~ls~~~~Tpqq 1225 (2005)
T COG5103 1147 KVDKIAMENQDVACRLIERAGVSKVSESISAEIEHMIVERVRHRKTTPNLPFVDPAA-ANLSLNLPSSLELSIGKATPQQ 1225 (2005)
T ss_pred HHHHHHHhchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCccCccc-CccccCCCcccccccCCcCHHH
Confidence 8999999999999999999999999999999999999999999997 7899999996 5557899999999999999999
Q ss_pred HHHhHhhhcCcCCcCCCCCCCccccCccCCCCchhhhhcccCCCCCCCCCCcCCCCCCCcccccCCccccCCCcccCccc
Q 000073 1487 QRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAG 1566 (2421)
Q Consensus 1487 ~~VYEdF~r~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 1566 (2421)
+++||||.|+|-..- .+|.+.++.-+ -...+++ ++++ + |.++. +..+
T Consensus 1226 f~lyE~fD~l~ls~i---~~h~~~~~~n~----------~~Td~ad---------stda---l--~~nl~------nt~e 1272 (2005)
T COG5103 1226 FSLYEDFDRLSLSTI---MGHIEKIAINA----------IDTDSAD---------STDA---L--NNNLN------NTVE 1272 (2005)
T ss_pred hhhhhcccccccccc---ccccchhhhhh----------hcCChhh---------hhhh---h--ccccc------hhhh
Confidence 999999999763221 22222211100 0000000 0000 0 00000 0000
Q ss_pred cccccc-ccccCCCCCcccccccccccccCChhhhhhcccCCCCCCCCCCCCCCCCCCCchhhhccccccccccchhhhH
Q 000073 1567 FLSTSL-VHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDAL 1645 (2421)
Q Consensus 1567 ~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 1645 (2421)
.-..|+ +++.. . ... . +.+ ..+. ..++|.. .+..+. .
T Consensus 1273 ~eAnQta~~yq~-n-----------~L~-i-~~q--l~Ql------------~~~~Py~-~~~~V~---------a---- 1310 (2005)
T COG5103 1273 NEANQTALEYQE-N-----------LLI-I-KAQ--LVQL------------SKKIPYS-SKKNVI---------A---- 1310 (2005)
T ss_pred hHHHHHHHHHHH-H-----------hhh-h-hhH--HHHh------------cccCCcc-hhhcCc---------c----
Confidence 000000 01000 0 000 0 000 0000 0011111 011111 0
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHHHhhhhHHHHHhhcChhHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHhH
Q 000073 1646 DKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCK 1725 (2421)
Q Consensus 1646 ~~~~~~~~~l~~l~~~~~~~~~i~~~i~~v~~~i~~~~~rd~~al~~aqki~~~L~~~~~~~l~~e~~~~~L~~L~~~~~ 1725 (2421)
+..|-. +.+ +. +++..++.+|...|.++ |+.++.++|.+++.|+..+.+++++||+.++||+||++|-
T Consensus 1311 D~e~~~---lkE-----~~-NQ~~t~~~~Il~~Ia~s---d~~~l~c~q~c~~il~~~skSp~~~evls~~lEkic~~S~ 1378 (2005)
T COG5103 1311 DEEHGL---LKE-----GK-NQFETVFRRILESIASS---DDKDLECIQLCRYILGHLSKSPSKEEVLSRCLEKICKISF 1378 (2005)
T ss_pred hhhhhH---HHh-----hH-HHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHhHhH
Confidence 111111 111 11 35667777777777655 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccccccCHHHHHHHHHhCCCChhHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCchh-hHhhHHH
Q 000073 1726 LVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRV-VISELHN 1804 (2421)
Q Consensus 1726 ~~~kevt~wl~~~~d~rk~N~~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~~~~~-~~~df~~ 1804 (2421)
+++|+|.||++|+.|.||||+|+|.+||++||||..|||.+|++.|.+.. +.++|||+.|++.++.+|.++ +..||.+
T Consensus 1379 kt~k~V~~wl~ysnD~rKfnip~I~slie~nli~~~E~D~~l~r~i~~~~-gnvtdFai~Ll~~~V~~e~pi~~~~dFI~ 1457 (2005)
T COG5103 1379 KTQKEVLGWLIYSNDPRKFNIPLIGSLIEHNLINVVEYDQALSRKIPLAD-GNVTDFAIALLASLVTAEVPICTVYDFIC 1457 (2005)
T ss_pred HHhhhhheeeeecCChhhcCcHHHHHHHHhccchhhhHHHHHHhhccccc-cchHHHHHHHHHHHhccCCceeeHHHHHH
Confidence 99999999999999999999999999999999999999999999997543 458999999999888877665 4599999
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHhCcccccCCCCCCccccchhhhhhcccccccCcccCccCCCCCCCCCCCCCChHH
Q 000073 1805 LVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPE 1884 (2421)
Q Consensus 1805 tleaL~~~~~~~~~~~~l~~l~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e 1884 (2421)
|+|.|+.-. + +.++++.+++.+... ..+..| ....+.|
T Consensus 1458 tLe~la~s~----d-~~vk~f~~~~~~tm~---------------------~~v~kg----------------nKqq~nd 1495 (2005)
T COG5103 1458 TLEMLAGSS----D-PKVKDFFQKISNTMM---------------------HIVAKG----------------NKQQLND 1495 (2005)
T ss_pred HHHHHhccC----C-hhHHHHHHHHHHhhh---------------------hccccc----------------ccccccc
Confidence 999885432 2 445777766643100 000011 1235679
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHcCcccCCchhHHHHHHHHHHHHHHhhhccccCCCCCCCCCccccccch
Q 000073 1885 QVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFL 1964 (2421)
Q Consensus 1885 q~~~lF~EWv~l~~~~~~~~~~~~~Fi~qL~~~giL~~~d~~~~FfR~~~E~sV~~~~~~~~~~~g~~~~~s~~~~~~f~ 1964 (2421)
|+..+|.|||++.++...+|..-..|+.||+++|+++..|+...|||+.+|.+|..|.+.. +.+.+|.
T Consensus 1496 qi~iVf~ewv~llrn~~~nD~v~~~F~~ql~e~g~~s~~~~~~~ffk~sle~~i~aF~e~~------------pta~~y~ 1563 (2005)
T COG5103 1496 QIIIVFSEWVELLRNCRFNDTVPEMFLPQLMERGDYSASLDIRSFFKVSLEHFIRAFHERI------------PTAYCYL 1563 (2005)
T ss_pred eEEEeeHHHHHHHHhcccccccHHHHHHHHHHccCCCchHHHHHHHHhhHHHHHHHHhhcC------------Cccccee
Confidence 9999999999999999999999999999999999999999999999999999999997432 2479999
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHhhcCCCCCCCcchHHH
Q 000073 1965 AIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQI 2044 (2421)
Q Consensus 1965 ~iDA~akLi~~lvk~~~~~~~~~k~~~L~kiL~ivv~Vl~~dhe~~~~~FnQrpyfRlfs~LL~el~~~d~~l~~~~~~i 2044 (2421)
.||||+.||+.++++. +..+.++..|++||++++++|+.++|..+++.||+|+||||||++|+||.......++.-..+
T Consensus 1564 ~IDal~sLi~n~l~~e-G~te~T~s~~~~kii~~i~~VFae~h~~~~e~~h~~~fFrLfS~il~e~~dv~~~d~s~fv~~ 1642 (2005)
T COG5103 1564 KIDALPSLIKNRLYEE-GSTEGTVSVLFRKIIKDILFVFAEAHRKRAEFVHNYLFFRLFSRILIETLDVIDEDTSCFVNN 1642 (2005)
T ss_pred eccchHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhhhhhccchhhhhh
Confidence 9999999999999996 444567889999999999999999999999999999999999999999987554444555678
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHhHHhhcccchHhhhcCCCCCChHHHHHHHHHHHHhhhhhhcCCCCCchHHHHHHhHH
Q 000073 2045 LSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTL 2124 (2421)
Q Consensus 2045 l~~fa~~l~~LqP~~~PgF~FaWl~LISHR~FmP~lL~~~~~~GW~~~~~LL~~Ll~Fl~~~L~~~~ls~~i~~lYkGtL 2124 (2421)
.+.|-++|..|||.+||||+|||++|+|||+.+|++|+.|+.+||..|..+|+++|||+. ++...+...++++|+|+|
T Consensus 1643 ~Sv~y~~f~alqP~~fPgFtfawl~llSH~~llP~vL~v~Nd~~~d~f~~~lmsflKFlD--~s~~~v~~~~~~ly~Gfl 1720 (2005)
T COG5103 1643 RSVVYSIFEALQPSRFPGFTFAWLELLSHKFLLPKVLLVNNDKINDLFSEGLMSFLKFLD--LSEEGVVLVMEALYCGFL 1720 (2005)
T ss_pred HHHHHHHHHHcCcccCCchHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcch
Confidence 889999999999999999999999999999999999999999999999999999999998 788888899999999999
Q ss_pred HHHHHHHhcchhHHHHHhHhhhccCCCCccccccceecccCCCCCCCCCCCCCCCCCCCcCcCCCCccccchHHHHHHhh
Q 000073 2125 RVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQ 2204 (2421)
Q Consensus 2125 RilLvLlHDfPeFL~~yh~~lc~~IP~~ciQLRNlILSA~P~~mrLPDPftp~Lkvd~LpEi~~~P~I~~d~~~~L~~~~ 2204 (2421)
|+.||++||||-||+++||++...+|+.|+||||+||||||++|.+||||..||||.++|+|+..|.++.|+...| .+
T Consensus 1721 r~iLv~~hD~P~FLit~~yql~~~~P~e~vqlrNm~lSa~Psdlt~p~Pfa~~Lkv~~~P~~k~~p~~f~d~~v~l--e~ 1798 (2005)
T COG5103 1721 RTILVYLHDFPGFLITQIYQLFRRNPLECVQLRNMMLSAYPSDLTYPCPFAQGLKVQEYPHIKNFPNQFRDRIVPL--EG 1798 (2005)
T ss_pred heeeeeeccCchHHHHHHHHHhhcCCHHHHHHHHHHHHhccccCcCCCchhcccccccChHhhhhhHHhcccccch--hh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998887 47
Q ss_pred hhHHHHHHhccCCCCcchHHHHHHHccCCccccccCCcc---ccHhHHHHHHHHHHHHHHHhhhccCCcccccCCCCchh
Q 000073 2205 MRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTR---YNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLT 2281 (2421)
Q Consensus 2205 lk~~vD~yL~~r~~~~~~l~~l~~~L~~~~~~~~~~G~~---yN~~liNAlVLyVG~~Ai~~~~~~~~~~~~~~~~~~~~ 2281 (2421)
+++.+| | |.+.++.+..+.+++...-+.....|.. ++-..+-++|.|+|+.++.... +
T Consensus 1799 ~~s~~d--L--e~~~~S~l~~~~s~~~~d~y~~k~t~~~~~~~dn~~~~~~V~h~~~es~~~~~-----~---------- 1859 (2005)
T COG5103 1799 QNSFFD--L--EACLRSALQNRTSVKVTDLYIGKNTPLWVYLIDNLNEMDAVSHTVVESIKFMI-----E---------- 1859 (2005)
T ss_pred cccchh--h--HHHhhhhhhHHHHHHHHHhhccccCceeeeeeccHHHHHHHHHHHhhhHHHHH-----H----------
Confidence 888888 6 5666677777777665544333233322 2456788999999999865311 1
Q ss_pred hhh-hhHHHHHHHHHHhccChhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHhhccc----chhhHHHHHHHHHHHhccC
Q 000073 2282 AFL-VSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEAN----QEIIQEQITRVLFERLIVN 2356 (2421)
Q Consensus 2282 ~f~-~s~~~~il~~L~~~ld~EgRY~ll~aiaNQLRYPNsHT~yFS~~lL~LF~~~~----~~~IqEqItRVLLERLIv~ 2356 (2421)
.|+ +|+.+.++..++..+++|.||+++.||+|||||||+||+||||++|++|.+++ +-.||||||||||||+|||
T Consensus 1860 ~f~~ks~~~t~l~~~~r~g~~~~rY~ll~ai~~qlRYp~ihTy~fs~vfl~~fkS~~~N~QkL~ikE~m~t~lLeRII~N 1939 (2005)
T COG5103 1860 RFMHKSEILTMLWIRMRAGGPPKRYFLLTAILAQLRYPEIHTYDFSRVFLKSFKSHGYNPQKLLIKEQMTTVLLERIICN 1939 (2005)
T ss_pred HHhccccHHHHHHHHHhcCCCchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHcC
Confidence 233 35589999999999999999999999999999999999999999999998763 4579999999999999999
Q ss_pred CCCchHHHHHHHHHhhCCCCcccccCcCcchHHHHHHHHHHHHhcCCCCCCC
Q 000073 2357 RPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVD 2408 (2421)
Q Consensus 2357 rPHPWGLlITFiELikNp~Y~Fw~~~Fv~~aPEIe~lF~svarsc~~~~~~~ 2408 (2421)
|||||||+|||+||+||.+||||+||||+..|||.++|+++.+++|.+..+.
T Consensus 1940 rPH~WGl~i~FTeLlkNeD~Nf~k~Pyikr~~EI~~lfdsL~e~v~a~ssan 1991 (2005)
T COG5103 1940 RPHPWGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFDSLHEHVMAPSSAN 1991 (2005)
T ss_pred CCCcchhheeHHHHhcccccchhcCcccccCHHHHHHHHHHHHHhhCccccc
Confidence 9999999999999999999999999999999999999999999999775544
No 2
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=100.00 E-value=2e-290 Score=2714.74 Aligned_cols=1470 Identities=38% Similarity=0.597 Sum_probs=1163.8
Q ss_pred hhHHHHhhcCCchhHHHHHHHhhcccccCHHHHHHHHhhcCcchHHHHHHHHHHHHhhcccccccCCCCCCCcccccccc
Q 000073 532 KILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYM 611 (2421)
Q Consensus 532 k~L~~lL~~~pf~f~idLA~lAsrre~l~LekWL~~~l~~~~~~f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~ 611 (2421)
.-++.|.|+.||.++++.+.+|+.++++++..|+..++.--.+ |..++.-... .++.++.+..+...
T Consensus 82 ~~~~~v~Nm~pn~~~~n~~~la~~~~a~~F~~~l~~~~~~~~~-----~~~~~s~~~~--------~~q~~~~~~~~~~~ 148 (1591)
T KOG1831|consen 82 PGMDIVGNMSPNLEALNIRDLASCFGAVNFSIWLLESLYLMID-----DAVPLSLIIT--------APQEPSFKPWPNER 148 (1591)
T ss_pred CcchhhhhcCcchhhhchHhhhhhcCCCCchhhhcccceeecc-----CCCcccceee--------ccccccCCCChhHH
Confidence 4578899999999999999999999999999999988653221 1222221111 01111111111100
Q ss_pred -hhHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCCCCCC-----CCCCCChhhHHHHHHHHHHHHhccCC
Q 000073 612 -EKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADS-----STSEGYADDIEAEANSYFHQMFSGQL 685 (2421)
Q Consensus 612 -~tv~~lL~~L~~~~~~~~s~~l~e~l~~v~~~~i~~~PrL~n~~~~d~-----~~~~~~~~dIE~Ean~yfqkmYs~ei 685 (2421)
.++..++-..... ++ -.+..-+++.+|. .++.+|++|||+|||+||||||+ .+
T Consensus 149 ~~qi~~l~p~~~~q---------------~q-----rt~s~sa~~~~d~v~~~~~~~~~~s~die~E~~sYfqkiYn-~l 207 (1591)
T KOG1831|consen 149 FAQIYFLLPIGPSQ---------------LQ-----RTESVSAPGPHDPVFFARQVSIEFSRDIEFEVNSYFQKIYN-CL 207 (1591)
T ss_pred HHHHHHHccCChhh---------------cc-----ccccccCCCCCCchhhhcccccccChhHHHHHHHHHHHHHH-Hh
Confidence 1222221111110 01 1111113333443 34578999999999999999999 99
Q ss_pred CHHHHHHHHHHhhcCCccccchhHHhHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000073 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (2421)
Q Consensus 686 sI~~iv~~L~r~K~S~~~rdqdiFaCMih~LFdEYrFf~~YP~~eL~~TAvLFG~lI~~~Lv~~~~L~iALr~VLeAlr~ 765 (2421)
+|+++|++|+|||.|.++|||++|+||.|+||||||||++||++||++||+||||||.|+|+++.+||+|+|+|++|+++
T Consensus 208 sI~~vI~lL~rfr~Se~~Rdq~vf~C~~~~lF~EyrFF~dYPe~~L~~Ta~lfGsiI~~~Lls~v~l~la~R~Vl~~l~~ 287 (1591)
T KOG1831|consen 208 SIFQVIDLLQRFRLSELPRDQEVFACAAHNLFEEYRFFRDYPELALATTAVLFGSIIFFVLLSFVELGLALRLVLAALGI 287 (1591)
T ss_pred hHHHHHHHHHhcccccChhhhhHHHHHHhhccccccccccCHHHHHHHHHHhcchhHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhccCCCCCCCCCCCcccccccccccC
Q 000073 766 PADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATS 845 (2421)
Q Consensus 766 p~~SkMf~FGiqAL~qF~~RL~EwPqyC~~Llqip~L~~~~p~l~~~ie~~l~~~~~~~~~~~~~~~~~~~q~~~~q~~~ 845 (2421)
||+||||+||++||.+|+.||.+||+||.+|+.+|++...+|++|++|....- +.. . +.
T Consensus 288 P~~skl~~Fgv~Al~~frskL~~Yp~yC~~Il~~~~~s~~~~~l~~~I~~~~~---san----a---~~----------- 346 (1591)
T KOG1831|consen 288 PPSSKLFIFGVQALLPFRSKLLDYPKYCFDILSIPPFSKFRPHLYDSIWETAT---SAN----A---TT----------- 346 (1591)
T ss_pred CChhHHHHHHHHHHHHHHHHhcchHHHHHHHHhCcchhhccHHHHHHHHhhhh---hcc----C---CC-----------
Confidence 99999999999999999999999999999999999999999999999976321 110 0 00
Q ss_pred CCCCccCCcccccccchhhhHHhhhhccccccccccccccCCCCCCCCcccCC-CCCccCCCCCCchhhhhcccCCCccc
Q 000073 846 GNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIG-QPSSVAPLGDTSSAQKLHNAVSAPAM 924 (2421)
Q Consensus 846 ~~~~~~~~~~~~~~~q~~~~~~~qq~~~g~l~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~ 924 (2421)
....|..+..+ .++.+
T Consensus 347 ------------------------------------------~~s~pv~~~~p~~~~av--------------------- 363 (1591)
T KOG1831|consen 347 ------------------------------------------RKSDPVRSASPYLDSAV--------------------- 363 (1591)
T ss_pred ------------------------------------------cccccchhccccccccc---------------------
Confidence 00001000000 00000
Q ss_pred cccCCCccCCCCCccccccccccchHHHHHHhhhcCCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhH
Q 000073 925 LSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPW 1004 (2421)
Q Consensus 925 ~~~~~~~~~p~~~~~~~~~~~~~nI~tL~~~~e~~~~~~e~Ppe~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~W 1004 (2421)
+.. . + ..+.+.|||+|+|||+|++||+|+.|+.+|++|+|++|+++||+|
T Consensus 364 -s~~---~-~-------------------------P~n~~~~~e~v~dkilF~lNNlsq~N~~qKvdevk~~ltp~y~~W 413 (1591)
T KOG1831|consen 364 -SKH---V-E-------------------------PKNAEGPPEDVVDKILFPLNNLSQLNFNQKVDEVKEILTPEYYPW 413 (1591)
T ss_pred -ccc---C-C-------------------------cccccCCchhhhhhheeeechHhhhhhHHHHHHHHHHcChhhHHH
Confidence 000 0 0 112458999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcccCCcchHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcc
Q 000073 1005 FAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQV 1084 (2421)
Q Consensus 1005 FA~YLV~kRasiEPN~H~LYl~fLd~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkP 1084 (2421)
||+|+|+||||+|+|||+||.+|++.+++.. | -+||++|||||||||.||||||||
T Consensus 414 fs~YiV~qR~S~E~Nf~~LYskFi~ai~n~~--------t----------------~~dk~~LKNLgsWLG~iTl~rNkP 469 (1591)
T KOG1831|consen 414 FSQYIVTQRVSKEINFHELYSKFISAIKNSV--------T----------------ESDKRLLKNLGSWLGEITLGRNKP 469 (1591)
T ss_pred HHHHHhhhhhhcccchHHHHHHHHHHHhCcc--------c----------------hhHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999982 2 179999999999999999999999
Q ss_pred cccCCCChhhHHHHHHhcCceEEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcC
Q 000073 1085 LRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLG 1164 (2421)
Q Consensus 1085 I~~k~ld~K~LLlEaY~~g~Li~VIPFVcKVLe~~~~SkVFkPPNPWtm~IL~lL~Ely~~~~LKLnLKFEIEVL~K~L~ 1164 (2421)
|++.++|||+||+|||++||+..|+|||||||+.|.+|+|||||||||||||++|+|+|+.||||+|||||||||||+||
T Consensus 470 I~~l~l~~kslLlEaY~sg~ll~VvPFVaKIL~~asksrIFkpPnpW~~gIlklL~ELh~e~d~klnLkFEIEVLlkslN 549 (1591)
T KOG1831|consen 470 IKELDLDFKSLLLEAYGSGRLLPVVPFVAKILEGASKSRIFKPPNPWTMGILKLLAELHQEADLKLNLKFEIEVLLKSLN 549 (1591)
T ss_pred hHHhhhhHHHHHHHHhccCceeecchHHHHHHHhhhhccccCCCCchHHHHHHHHHHhcccccceeeeeeeeeehhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccccchhhccCCCCCCCCCcCCCCCcccCCCCccccCCCCCCCCCCCcCCCCCCCCCccccccccccccc
Q 000073 1165 VDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRL 1244 (2421)
Q Consensus 1165 ldl~dieps~~L~~r~~~~~~~~d~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 1244 (2421)
++++++||+++++|..+. .+... .+.++.. +..+++.. +|
T Consensus 550 ~~l~~le~~~~lnn~~~i-~~~L~-----------~~~~e~h-------~~~~~~~~--------------q~------- 589 (1591)
T KOG1831|consen 550 VILSELEPSETLNNIIRI-KKQLV-----------LMKLETH-------QSLELEDI--------------QQ------- 589 (1591)
T ss_pred chHhhcchhhHHhhHHhH-HHHHc-----------cCChhhc-------cccccCch--------------hc-------
Confidence 999999999999994431 11110 0000000 00000000 00
Q ss_pred CcCcchhHHHHhhccCCCCCCcccccccccCCCCCCccccccc-CCCCCCceEEecccccccccchhhhhhHHHHHHHHH
Q 000073 1245 SSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAI 1323 (2421)
Q Consensus 1245 ~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~-~ip~l~~~~~i~~~l~~~~~~p~Lk~iv~~Ai~rAI 1323 (2421)
..+.+ ...|++++... ...++.+++...| ||++|++|+.|++++|
T Consensus 590 -------------------------~~~~~--~~~fa~~~~n~~t~~~~i~~l~~~~-------~P~~Kh~~~~Aleqsv 635 (1591)
T KOG1831|consen 590 -------------------------VTLGN--TIAFAYDARNVSTATEVIKQLDLRP-------HPDIKHRVQEALEQSV 635 (1591)
T ss_pred -------------------------ccccC--CccceecccccchhhhhhhhccCCC-------CccHHHHHHHHHHHHH
Confidence 00000 11144444321 1223333444444 8999999999999999
Q ss_pred HhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHH
Q 000073 1324 KEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASE 1403 (2421)
Q Consensus 1324 rEII~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si~~~Lr~ll~~~~~~~~ 1403 (2421)
+|||.||||||+.||++||++||+||||+|+||+|||.||+.|||+||++||++||||||+++|+++|+..+.++.....
T Consensus 636 ~eii~~Vv~rs~~IA~ttTe~lirKDFA~e~~es~l~~Aa~~M~r~la~~lAmiTcreplk~am~~nl~~~~~~~l~~~~ 715 (1591)
T KOG1831|consen 636 VEIIEPVVERSSGIASTTTESLIRKDFALERDESRLRLAASQMVRELAAGLAMITCREPLKVAMSSNLVLAALSLLSLMA 715 (1591)
T ss_pred HHHHHHHHHHhhceeehhHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877666788
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcCcccccccccCCCCCCCCCCCCC
Q 000073 1404 LLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHL 1482 (2421)
Q Consensus 1404 ~~E~~i~~~vnDNldLac~iIEKaA~EKAi~eIde~l~~~~~~RR~hre~-~~~~f~D~~~~~~~~~~lPe~LrlkpgGl 1482 (2421)
.+++++..+++||++++|++|||+|+|||+.|||.+|++++..|+.||++ ++.||+|+....+. ..|||++|+++||+
T Consensus 716 ai~~a~~t~~~dNv~l~~~~Iek~a~eka~~dI~~~L~q~~~~Rv~~k~~~~~~~fvD~~~~~~~-~~LP~~vr~~~~~~ 794 (1591)
T KOG1831|consen 716 AIARAADTLQSDNVELVVKFIEKTAIEKATQDIDSRLEQDICGRVFHKENPEVMPFVDLLSAAYS-CTLPEVVRLKIGGL 794 (1591)
T ss_pred HHHHHHHHHHhhchhhHhhhhHHHHHHHHHHHHHHHHHHhhHhheecccCCccccchhhhhhhhh-ccCcHhhhcccCCC
Confidence 99999999999999999999999999999999999999999999999997 68999999875654 44999999999999
Q ss_pred ChhHHHHhHhhhc-CcCCcC-CCCCCCccccCccCCCCchhhhhcccCCCCCCCCCCcCCCCCCCcccccCCccccCCCc
Q 000073 1483 SVSQQRVYEDFVR-LPWQNQ-SSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTT 1560 (2421)
Q Consensus 1483 ~~~Q~~VYEdF~r-~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 1560 (2421)
+|+|++|||+|+| +|+... ++.+.+.. | .+++.++++...
T Consensus 795 ~~~l~~vYe~F~k~i~~~~~~s~~~~la~----------------~----------------------~~~~~dlt~~~~ 836 (1591)
T KOG1831|consen 795 TPQLFRVYEEFPKPIPGFLGNSSRKDLAE----------------Y----------------------ITESSDLTQPHV 836 (1591)
T ss_pred CHHHHHHHHHcccccccccccCCCccccc----------------c----------------------cCCCccccchhh
Confidence 9999999999998 554211 01100000 0 011111110000
Q ss_pred ccCcccccccccccccCCCCCcccccccccccc-cCChhhhhhcccCCCCCCCCCCCCCCCCCCCchhhhcccccccccc
Q 000073 1561 ESTSAGFLSTSLVHIGAADGGILHNSESESVNA-AFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSL 1639 (2421)
Q Consensus 1561 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1639 (2421)
.+..+... .+++.++. ... .+..++...++. .++ .....|+.+
T Consensus 837 -------~s~~~~lv------~~ei~~~~-~~~a~~~~i~~~~l~~----------~a~---s~~~~m~~v--------- 880 (1591)
T KOG1831|consen 837 -------ISNALDLV------VREICGAI-VEKACQTAIQTGMLQF----------KAQ---SVEKLMEEV--------- 880 (1591)
T ss_pred -------hhHHHHHH------HHHHHHHH-HHHHHHHHHHhhhhhh----------hhh---cchhhHHhc---------
Confidence 00000000 00000000 000 000000000000 000 000112111
Q ss_pred chhhhHHHHHHHHHHHHHHhhcCCcchhhHHHhhhhHHHHHhhcChhHHHHHHHH--HHHHHHhcccCCcchHHHHHHHH
Q 000073 1640 QTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQ--KVFKGLYENASNNLHFSAHLAIL 1717 (2421)
Q Consensus 1640 ~~~~~l~~~~~~~~~l~~l~~~~~~~~~i~~~i~~v~~~i~~~~~rd~~al~~aq--ki~~~L~~~~~~~l~~e~~~~~L 1717 (2421)
+.++..............++.. .-.+-.+.+ +.+...+ ..+--.+++..+|
T Consensus 881 -----------------------~~~~~~~~~~~~~~~~~ar~i~-hli~~~V~~~~~~l~~~~---~~~~I~~i~m~iL 933 (1591)
T KOG1831|consen 881 -----------------------PARNMVVNLVNSLLLLVARSIE-HLISGLVSYFMKNLELDF---STEKIFKIIMEIL 933 (1591)
T ss_pred -----------------------cchhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh---cchhHHHHHHHHH
Confidence 1111111111111111110000 000011111 1111111 1122345777888
Q ss_pred HHHHHHhHH-HHHHHHHhhhccccccccCHHHHHHHHHhCCCChhHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCch
Q 000073 1718 AAIRDVCKL-VVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESR 1796 (2421)
Q Consensus 1718 ~~L~~~~~~-~~kevt~wl~~~~d~rk~N~~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~~~~ 1796 (2421)
+-+|....+ ..+.|+-.+..+++++|||++.+..|++.+|++..++|.+|+++|++|.|..++.|+++|++....++..
T Consensus 934 ~~ic~~~qk~~~~~vs~a~s~~~~~~e~n~~~~~~L~~~~l~~~~~vd~~l~~amDs~~n~~vi~f~iell~~~~~~dnv 1013 (1591)
T KOG1831|consen 934 DNICRFIQKAGVRKVSEAISSSRSSLEYNIEKAEHLILSLLLDSGHVDKHLAKAMDSGGNQEVIAFLIELLRIAYGGDNV 1013 (1591)
T ss_pred HHHHHhccHHHHHHHHHHHHhchHHHHhhHHHHHHHHHHhccChhhHHHHHHHHhccCCChHHHHHHHHHHHHhccCcch
Confidence 888887744 5556777888999999999999999999999999999999999999999999999999999988888875
Q ss_pred hhH---hhHHHHHHHHHHHHcCCCCh----hHH----HHHHHHHhCcccccCCCCCCccccchhhhhhcccccccCcccC
Q 000073 1797 VVI---SELHNLVDALAKLAAKPGSP----ESL----QQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTAN 1865 (2421)
Q Consensus 1797 ~~~---~df~~tleaL~~~~~~~~~~----~~l----~~l~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1865 (2421)
+.. ..|..|.|.+.|+.+.-.+. +.. ...++.+-. ++.++
T Consensus 1014 i~~~~~~~~~~t~E~~~ri~q~v~s~~~~~g~~~~~~~~~v~~~~k----------------------------~~s~~- 1064 (1591)
T KOG1831|consen 1014 IADEWKNLFKETKEELFRILQSVESSEDKSGECASLCDYIVEHAIK----------------------------SGSSA- 1064 (1591)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccC----------------------------CCCch-
Confidence 433 35778999998864321110 111 111111100 00000
Q ss_pred ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHcCcccCCchhHHHHHHHHHHHHHHhhhcc
Q 000073 1866 REDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSE 1945 (2421)
Q Consensus 1866 ~~~~~~~~~~~~d~~~~~eq~~~lF~EWv~l~~~~~~~~~~~~~Fi~qL~~~giL~~~d~~~~FfR~~~E~sV~~~~~~~ 1945 (2421)
..-....+|+.++.||++.+|.|||++|+.+..++....+||+||+++|||++||..++|||.|+|+||+.++...
T Consensus 1065 ----~~m~~~~~~~~~lt~K~~~v~~~Wv~L~~~~~~~~~s~~~fi~ql~~~GVls~dd~ltqFfr~~~el~~~i~~~a~ 1140 (1591)
T KOG1831|consen 1065 ----DFMFRRMDDKQKLTEKTEIVFLEWVILLNDSRKNDESLAAFIQQLNEIGVLSTDDLLTQFFRADLELCVVIFLEAS 1140 (1591)
T ss_pred ----hHHHHhcCcchhhhhHHHHHHHHHHHHHhccccchHHHHHHHHHHHHcCcccchHHHHHHHHhhhhhhHHHHHHhc
Confidence 0011234677899999999999999999999999999999999999999999999999999999999999998543
Q ss_pred ccCCCCCCCCCccccccc-hhhhHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHH
Q 000073 1946 VINPGTLQSPQQSQSLSF-LAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFI 2024 (2421)
Q Consensus 1946 ~~~~g~~~~~s~~~~~~f-~~iDA~akLi~~lvk~~~~~~~~~k~~~L~kiL~ivv~Vl~~dhe~~~~~FnQrpyfRlfs 2024 (2421)
.. ....+ .+++|+.+....|.+|.. +++|.+|++||+++|++|+++||+++|+.|||+||||+|+
T Consensus 1141 ~~-----------~a~~~i~tv~~~~~~l~~l~~f~d---~~tk~dl~~KI~~livgv~akdHs~~~e~f~~~~y~Rlf~ 1206 (1591)
T KOG1831|consen 1141 LI-----------TALVQICTVYAFICTLEMLDGFVD---LPTKIDLFNKILNLIVGVFAKDHSERGEYFNQCPYFRLFS 1206 (1591)
T ss_pred cc-----------ccchhhhhHHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHhcchHHhhhhHhhCcHhHHHH
Confidence 10 12222 578888888888888863 2689999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCcchHHHHHHHHHHhhhcCCCCCCchhHHHhHHhhcccchHhhhcCCCCCChHHHHHHHHHHHHhhh
Q 000073 2025 NWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLE 2104 (2421)
Q Consensus 2025 ~LL~el~~~d~~l~~~~~~il~~fa~~l~~LqP~~~PgF~FaWl~LISHR~FmP~lL~~~~~~GW~~~~~LL~~Ll~Fl~ 2104 (2421)
|+|.||.+++.+++.+.++|+++|+++||.|||.++|||+||||+|||||+|+|+||..+++|||+.|++|+++|||||+
T Consensus 1207 ~ll~E~~~~~~~le~~~~~i~SaF~~tfhalqp~~~Pgf~fawL~lishr~li~~~L~~~~~k~~~~~~~llislfkfL~ 1286 (1591)
T KOG1831|consen 1207 MLLPELMTADSVLEPISLDILSAFKNTFHALQPRRFPGFAFAWLELISHRGLIPRMLAETNQKGWPLYAQLLISLFKFLA 1286 (1591)
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHHHHhCcccCcccceeeeecccchhHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCchHHHHHHhHHHHHHHHHhcchhHHHHHhHhhhccCCCCccccccceecccCCCCCCCCCCCCCCCCCCCc
Q 000073 2105 PFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLP 2184 (2421)
Q Consensus 2105 ~~L~~~~ls~~i~~lYkGtLRilLvLlHDfPeFL~~yh~~lc~~IP~~ciQLRNlILSA~P~~mrLPDPftp~Lkvd~Lp 2184 (2421)
||+||.+++++++.+|||||||+|||+||||||||+|||.|||.|||+|+||||+|||||||+|+|||||++|||||+||
T Consensus 1287 ~ylrn~~~~k~~~~lykgTLrVilvllhDfp~fl~~~hy~~~~~iPp~cvqlrniilsafp~~m~lpdpf~~~lkve~lp 1366 (1591)
T KOG1831|consen 1287 PYLRNYELFKPVQLLYKGTLRVILVLLHDFPEFLCEYHYGLCDTIPPNCVQLRNIILSAFPSNMRLPDPFAVNLKVEMLP 1366 (1591)
T ss_pred HHHhhhhhhhHHHHHHHcchHHhhcccccchHHHHHhhhhccCCCCcHHHHHHHHHHHhccccCcCCCccccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCccccchHHHHHHhhhhHHHHHHhccCCCCcchHHHHHHHccCCccccccCCccccHhHHHHHHHHHHHHHHHhh
Q 000073 2185 EIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQL 2264 (2421)
Q Consensus 2185 Ei~~~P~I~~d~~~~L~~~~lk~~vD~yL~~r~~~~~~l~~l~~~L~~~~~~~~~~G~~yN~~liNAlVLyVG~~Ai~~~ 2264 (2421)
|+..+|+|+++++. +.+...++++|.|+++|.+. +|+..++.-++... .+|++||..+|||+|+|||++||.++
T Consensus 1367 e~~~ap~i~~~~~~-i~~~~~~~dl~a~l~s~~~~-t~l~~~~~~~~~~~----~~~~~~~~~~~naiVlyvG~~ai~~~ 1440 (1591)
T KOG1831|consen 1367 EGFYAPRILYSITQ-IMPSNFRKDLDARLKSSSPV-TFLSCLPQLLQVIK----EPGTRYNNQLINAIVLYVGIQAIAHL 1440 (1591)
T ss_pred hhhcCchhcCCHHH-hcccccCCCHHHHhhccccH-hHHHHhhHHHHHhc----CccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 78889999999999999886 99999998877643 47999999999999999999999999
Q ss_pred hccCCcccccCCCCchhhhhhhHHHHHHHHHHhccChhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHhhcccchhhHHH
Q 000073 2265 QTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQ 2344 (2421)
Q Consensus 2265 ~~~~~~~~~~~~~~~~~~f~~s~~~~il~~L~~~ld~EgRY~ll~aiaNQLRYPNsHT~yFS~~lL~LF~~~~~~~IqEq 2344 (2421)
++++..++++ +++|+++|+||++|+.+||+||||++++||||||||||+|||||||++||||.+++...||||
T Consensus 1441 ~~~~~~~~~~-------~it~s~~~~i~~nL~~nld~e~ry~~l~aianqlryp~~ht~~~s~~~l~lfk~~~~~pike~ 1513 (1591)
T KOG1831|consen 1441 RRKSQNPSTS-------TITHSAYMDIFQNLIVNLDTEGRYLLLNAIANQLRYPNSHTYYFSCVFLYLFKRAGNNPIKEQ 1513 (1591)
T ss_pred HhccCCCccc-------ccccCchhhHHHHHHHhcchhhhHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCCCchHHH
Confidence 9887665544 467899999999999999999999999999999999999999999999999999988889999
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHhhCCCCcccccCcCcchHHHHHHHHHHHHhcCCCCCCCc
Q 000073 2345 ITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDD 2409 (2421)
Q Consensus 2345 ItRVLLERLIv~rPHPWGLlITFiELikNp~Y~Fw~~~Fv~~aPEIe~lF~svarsc~~~~~~~~ 2409 (2421)
|||+++||+||||||||||+|||+||||||.||||+||||+|||||.+||++|+++|+....+..
T Consensus 1514 i~~~~lerii~nrPHpWGllitF~eLikN~~YNfw~~~fv~~~pEI~rlfqsl~~~~~~~s~s~~ 1578 (1591)
T KOG1831|consen 1514 ITRVLLERIIVNRPHPWGLLITFTELIKNPDYNFWDHPFVQCAPEIKRLFQSLAKYCKAYSTSEQ 1578 (1591)
T ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHcCCCcccccCcccccCHHHHHHHHHHHHHhhCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999996654444
No 3
>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [].
Probab=100.00 E-value=4.1e-115 Score=1069.61 Aligned_cols=366 Identities=59% Similarity=1.051 Sum_probs=342.5
Q ss_pred HHHHhhcCCCC--CCCcch--HHHHHHHHHHhhhcCCCCCCchhHHHhHHhhcccchHhhhc-CCCCCChHHHHHHHHHH
Q 000073 2025 NWLLDMSSLDP--VADGSN--FQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLI-GNGQKGWPYIQRLLVNL 2099 (2421)
Q Consensus 2025 ~LL~el~~~d~--~l~~~~--~~il~~fa~~l~~LqP~~~PgF~FaWl~LISHR~FmP~lL~-~~~~~GW~~~~~LL~~L 2099 (2421)
||||||+..+. .++..+ .+++.+||++||.|||.++|||+|||++|||||+|||+||. .++++||+.|++||+++
T Consensus 1 ~ll~e~~~~~~~~~~~~~~~~~~~~~~fa~~l~~lqP~~~PgF~faWl~LisHR~Flp~lL~~~~~~~gW~~~~~Ll~~l 80 (379)
T PF04054_consen 1 SLLCELHAISIEDSLESEELDRQFLLAFASFLHSLQPLYFPGFAFAWLELISHRMFLPKLLRNSPDQKGWPAYTRLLIDL 80 (379)
T ss_pred CeeeecccCcccccchhhhhHHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Confidence 58999995332 344444 59999999999999999999999999999999999999999 88999999999999999
Q ss_pred HHhhhhhhcCCCCCchHHHHHHhHHHHHHHHHhcchhHHHHHhHhhhccCCCCccccccceecccCCCCCCCCCCCCCCC
Q 000073 2100 LQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLK 2179 (2421)
Q Consensus 2100 l~Fl~~~L~~~~ls~~i~~lYkGtLRilLvLlHDfPeFL~~yh~~lc~~IP~~ciQLRNlILSA~P~~mrLPDPftp~Lk 2179 (2421)
|+|+++|+|+.+++++++++||||||++|||+||||||||+||++||++||+||+||||+||||||++|+|||||+||+|
T Consensus 81 l~Fl~~~l~~~~~~~~~~~lYkg~LRillvL~HDfPeFL~~~h~~lc~~iP~~ciQLrNiILsA~P~~~~lpDPf~~~lk 160 (379)
T PF04054_consen 81 LKFLGPYLKNEELSDAIKVLYKGTLRILLVLLHDFPEFLCEYHFSLCDVIPPHCIQLRNIILSAFPRNMKLPDPFTPGLK 160 (379)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhcChhHHHHHHHHHHhCCCCCCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcCCCCccccchHHHHHHhhhhHHHHHHhccCCCCcchHHHHHHHccCCcccccc----CCccccHhHHHHHHHH
Q 000073 2180 IDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAAS----AGTRYNVPLINSLVLY 2255 (2421)
Q Consensus 2180 vd~LpEi~~~P~I~~d~~~~L~~~~lk~~vD~yL~~r~~~~~~l~~l~~~L~~~~~~~~~----~G~~yN~~liNAlVLy 2255 (2421)
||++|||+++|.|++|++..|++.|||+.||+||++|+ +.+++++|+++|+.++.+... .|++||+++|||+|+|
T Consensus 161 vd~l~e~~~~P~i~~d~~~~L~~~~lk~~vd~~l~~~~-~~~~l~~i~~~l~~~~~~~~~~~g~~~~~~n~~linalVly 239 (379)
T PF04054_consen 161 VDRLPEIKQAPKILSDPTEDLQQAGLKKPVDQYLRNGP-SESLLAQILHKLQLPEPEETNGFGFDGVKYNVKLINALVLY 239 (379)
T ss_pred chhchhhccCCccccchhhhcchHHHHHHHHHHHHhCC-CHHHHHHHHHHhcCCccccccccCCCCccccHHHHHHHHHH
Confidence 99999999999999999999999999999999998744 459999999999998876543 5699999999999999
Q ss_pred HHHHHHHhhhccCCcccccCCCCchhhhhhhHHHHHHHHHHhccChhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHhh-
Q 000073 2256 VGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYA- 2334 (2421)
Q Consensus 2256 VG~~Ai~~~~~~~~~~~~~~~~~~~~~f~~s~~~~il~~L~~~ld~EgRY~ll~aiaNQLRYPNsHT~yFS~~lL~LF~- 2334 (2421)
||++|+.+.+.++..+.++++ ++++++|++|++++|+||||++++||||||||||+|||||||+||+||+
T Consensus 240 vg~~a~~~~~~~~~~~~f~~~---------s~~~~ll~~Li~~ld~E~RY~ll~aiaNqLRYPN~HT~~Fs~~lL~lF~~ 310 (379)
T PF04054_consen 240 VGIQAVAEAQKKSSAPSFNTK---------SPHVTLLSKLIHELDPEGRYYLLSAIANQLRYPNSHTHFFSCVLLNLFSS 310 (379)
T ss_pred HhHHHHHHHhccCCCcccccc---------ChHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 999999876666555555443 6799999999999999999999999999999999999999999999999
Q ss_pred ---cccchhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhhCCCCcccccCcCcchHHHHHHHHHHHHh
Q 000073 2335 ---EANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARS 2400 (2421)
Q Consensus 2335 ---~~~~~~IqEqItRVLLERLIv~rPHPWGLlITFiELikNp~Y~Fw~~~Fv~~aPEIe~lF~svars 2400 (2421)
+.++++||||||||||||+||+|||||||+|||+||+|||+|+||++|||||+||||++|++|+||
T Consensus 311 ~~~~~~~~~IqEqItRVLLERliv~rPHPWGllitfiELikN~~y~f~~~pFik~~pEI~~~f~~~~~~ 379 (379)
T PF04054_consen 311 DMNDPNDEDIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPKYNFWELPFIKCAPEIEKLFESLARH 379 (379)
T ss_pred CCCccchhhhHHHHHHHHHHHHhcCCCCCccHHHHHHHHHhCccCCcccCcccccCHHHHHHHHHHhcC
Confidence 667899999999999999999999999999999999999999999999999999999999999986
No 4
>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. This entry represents a domain of unknown function found in the Not1 subunit of the CCR4-Not complex.
Probab=100.00 E-value=4.6e-46 Score=405.18 Aligned_cols=145 Identities=56% Similarity=0.809 Sum_probs=140.2
Q ss_pred chhhhhhHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHH
Q 000073 1308 HLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSI 1387 (2421)
Q Consensus 1308 ~p~Lk~iv~~Ai~rAIrEII~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si 1387 (2421)
||+||++|+.|+||||||||.|||||||+||++||++||+||||+||||+|||+|||+||++||||||+||||||||.+|
T Consensus 1 ~p~lk~~v~~Al~rai~Eii~pvveRsv~IA~~Tt~~LV~KDFa~E~De~~~r~aa~~Mv~~LA~sLalvTcrepL~~~i 80 (147)
T PF12842_consen 1 HPQLKRIVQNALDRAIREIISPVVERSVTIASITTEELVKKDFATEPDENKMRRAAHNMVRSLAGSLALVTCREPLRESI 80 (147)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-CC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 000073 1388 SSQLRNSLQGL-TI-ASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHRE 1452 (2421)
Q Consensus 1388 ~~~Lr~ll~~~-~~-~~~~~E~~i~~~vnDNldLac~iIEKaA~EKAi~eIde~l~~~~~~RR~hre 1452 (2421)
.+|||+++++. +. .++++|+++++++|||+||||++|||+|+|||++|||++|+++|+.||+|||
T Consensus 81 ~~~l~~~l~~~~~~~~~~~~e~~i~~~~~dNlel~~~~Iek~a~eka~~~id~~l~~~~~~R~~~re 147 (147)
T PF12842_consen 81 QNNLRSLLSQLNGSTEQELPEQAIQQIVNDNLELACAFIEKAAMEKAIKEIDERLEPEIELRRRHRE 147 (147)
T ss_pred HHHHHHHHHhhcCCchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999843 33 4689999999999999999999999999999999999999999999999996
No 5
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=96.95 E-value=1.2 Score=62.70 Aligned_cols=293 Identities=22% Similarity=0.248 Sum_probs=177.2
Q ss_pred HhhhcccCCcchHHHHHHHHHhCChhHHHHHHHHHHH-HHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcccccC
Q 000073 1010 VMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYE-NCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAR 1088 (2421)
Q Consensus 1010 V~kRasiEPN~H~LYl~fLd~l~~~~L~~~Vl~eTy~-~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k 1088 (2421)
+.|==..|++=..||+.+... .+.|-+-+...|-+ -+++..++. |-+...=+=.+..|.++-+..-
T Consensus 658 irKDFA~e~~es~l~~Aa~~M--~r~la~~lAmiTcreplk~am~~n-----------l~~~~~~~l~~~~ai~~a~~t~ 724 (1591)
T KOG1831|consen 658 IRKDFALERDESRLRLAASQM--VRELAAGLAMITCREPLKVAMSSN-----------LVLAALSLLSLMAAIARAADTL 724 (1591)
T ss_pred HHHHHhcccchhHHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHhh-----------HHHHHhhhhHHHHHHHHHHHHH
Confidence 334445788888888877644 23444555555554 233333322 1111111111577888888888
Q ss_pred CCChhhHHHHHHhcCceEEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCcc
Q 000073 1089 EIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMK 1168 (2421)
Q Consensus 1089 ~ld~K~LLlEaY~~g~Li~VIPFVcKVLe~~~~SkVFkPPNPWtm~IL~lL~Ely~~~~LKLnLKFEIEVL~K~L~ldl~ 1168 (2421)
--|.+.+.+.-.++-++.-.+-++.+-|++..--+||.+.|||.|.++-.+.+.|++- |. +-++++..
T Consensus 725 ~~dNv~l~~~~Iek~a~eka~~dI~~~L~q~~~~Rv~~k~~~~~~~fvD~~~~~~~~~-LP-----------~~vr~~~~ 792 (1591)
T KOG1831|consen 725 QSDNVELVVKFIEKTAIEKATQDIDSRLEQDICGRVFHKENPEVMPFVDLLSAAYSCT-LP-----------EVVRLKIG 792 (1591)
T ss_pred HhhchhhHhhhhHHHHHHHHHHHHHHHHHHhhHhheecccCCccccchhhhhhhhhcc-Cc-----------HhhhcccC
Confidence 8889999999999999999999999999999999999999999999999999999975 32 22223222
Q ss_pred ccccccccccchhhccCCCCCCCCCcCCCCCcccCCCCccccCCCCCCCCCCCcCCCCCCCCCcccccccccccccCcCc
Q 000073 1169 DITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGT 1248 (2421)
Q Consensus 1169 dieps~~L~~r~~~~~~~~d~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 1248 (2421)
.+.|.-+ +-.++ |.+ ..+. ++
T Consensus 793 ~~~~~l~-----~vYe~---F~k---------~i~~-----------------------------~~------------- 813 (1591)
T KOG1831|consen 793 GLTPQLF-----RVYEE---FPK---------PIPG-----------------------------FL------------- 813 (1591)
T ss_pred CCCHHHH-----HHHHH---ccc---------cccc-----------------------------cc-------------
Confidence 2222211 00000 000 0000 00
Q ss_pred chhHHHHhhccCCCCCCcccccccccCCCCCCcccccccCCCCCCceEEecccccccccchhhhhhHHHHHHHHHHhhhh
Q 000073 1249 LMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVS 1328 (2421)
Q Consensus 1249 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~~ip~l~~~~~i~~~l~~~~~~p~Lk~iv~~Ai~rAIrEII~ 1328 (2421)
|+ ...+++..++.=+..+ .-...+..+.+-..+||.+
T Consensus 814 ----------~~--------------------------s~~~~la~~~~~~~dl-------t~~~~~s~~~~lv~~ei~~ 850 (1591)
T KOG1831|consen 814 ----------GN--------------------------SSRKDLAEYITESSDL-------TQPHVISNALDLVVREICG 850 (1591)
T ss_pred ----------cc--------------------------CCCcccccccCCCccc-------cchhhhhHHHHHHHHHHHH
Confidence 00 0000000000000000 0013458899999999999
Q ss_pred hcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 000073 1329 GIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQA 1408 (2421)
Q Consensus 1329 PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si~~~Lr~ll~~~~~~~~~~E~~ 1408 (2421)
-.++|+...|..+.. +-.|-+.+++--+ .-=|.+|+-+++.|+..+.. +++..-|..|.-....++. ..---+-
T Consensus 851 ~~~~~a~~~~i~~~~-l~~~a~s~~~~m~--~v~~~~~~~~~~~~~~~~~a-r~i~hli~~~V~~~~~~l~--~~~~~~~ 924 (1591)
T KOG1831|consen 851 AIVEKACQTAIQTGM-LQFKAQSVEKLME--EVPARNMVVNLVNSLLLLVA-RSIEHLISGLVSYFMKNLE--LDFSTEK 924 (1591)
T ss_pred HHHHHHHHHHHHhhh-hhhhhhcchhhHH--hccchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--Hhhcchh
Confidence 999998887777777 7677777765443 22367899999999887777 5666656555433211111 1111122
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000073 1409 VQLVTNDNLDLGCAVIEQAATDKAIQT 1435 (2421)
Q Consensus 1409 i~~~vnDNldLac~iIEKaA~EKAi~e 1435 (2421)
|..++-.|+|.+|.+++|++..|...-
T Consensus 925 I~~i~m~iL~~ic~~~qk~~~~~vs~a 951 (1591)
T KOG1831|consen 925 IFKIIMEILDNICRFIQKAGVRKVSEA 951 (1591)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 567888999999999999998754443
No 6
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=91.76 E-value=1.3 Score=51.34 Aligned_cols=180 Identities=21% Similarity=0.262 Sum_probs=120.8
Q ss_pred HhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHH---HHhhhcccCCcchHHHHHHHHHhCC--hhHHHHHHHHHHH
Q 000073 972 DKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQY---MVMKRASIEPNFHDLYLKFLDKVNS--KALNREIVQATYE 1046 (2421)
Q Consensus 972 DKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~Y---LV~kRasiEPN~H~LYl~fLd~l~~--~~L~~~Vl~eTy~ 1046 (2421)
.+|.-++|-+|++|++.-++|+.+..... +....+ .+.+++-.+|+|-.+|..++..++. +.+-..+++.++.
T Consensus 2 ~~v~~~lnkLs~~n~~~~~~~l~~~~~~~--~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~~~~~~f~~~ll~~~~~ 79 (200)
T smart00543 2 KKVKGLINKLSPSNFESIIKELLKLNNSD--KNLRKYILELIFEKAVEEPNFIPAYARLCALLNAKNPDFGSLLLERLQE 79 (200)
T ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999888653 344444 3567899999999999999999987 5677888888887
Q ss_pred HHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcccccCCCChhhHHHHHHhcCce------EEEechhhhcccccC
Q 000073 1047 NCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLM------IAVIPFTSKILEPCQ 1120 (2421)
Q Consensus 1047 ~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LLlEaY~~g~L------i~VIPFVcKVLe~~~ 1120 (2421)
.....+... ...++...+|+--+||.+..-+=-+.. .+.+++-+--+...- ..-|=.+|.+|+.|.
T Consensus 80 ~f~~~~e~~----~~~~~~~~~~~i~fl~eL~~~~~i~~~----~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G 151 (200)
T smart00543 80 EFEKGLESE----EESDKQRRLGLVRFLGELYNFQVLTSK----IILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCG 151 (200)
T ss_pred HHHHHHHHH----HHHhhhhHHhHHHHHHHHHHcccCcHH----HHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhh
Confidence 776654432 345667778888888888765443322 122222222222111 134456788888886
Q ss_pred CCccccCCCccHHH-HHHHHHHHhcCC---cccchhHHHHHHHHhh
Q 000073 1121 SSLAYQPPNPWTMA-ILGLLAEIYSMP---NLKMNLKFDIEVLFKN 1162 (2421)
Q Consensus 1121 ~SkVFkPPNPWtm~-IL~lL~Ely~~~---~LKLnLKFEIEVL~K~ 1162 (2421)
..--+ +.+|=.|. ++..+....... ++....+|-+|-|+.-
T Consensus 152 ~~l~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~r~~~~l~~l~~l 196 (200)
T smart00543 152 KDLER-EKSPKLLDEILERLQDYLLKKDKTELSSRLRFMLELLIEL 196 (200)
T ss_pred HHHcC-cccHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHH
Confidence 66443 66665554 445555555555 6777888888877653
No 7
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=82.09 E-value=4.1 Score=52.68 Aligned_cols=127 Identities=21% Similarity=0.274 Sum_probs=91.4
Q ss_pred HHHHHHHhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhc
Q 000073 1318 AMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQG 1397 (2421)
Q Consensus 1318 Ai~rAIrEII~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si~~~Lr~ll~~ 1397 (2421)
.+.-|-.. |.-.--| -||.+-+-+.|.|||-|++.. +-.|.|...+.+=+++.|---||-.||.|-+|-+=+.
T Consensus 241 glq~a~~k-I~GsnaR--CIa~L~afqevi~Dy~TP~~k----tlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~e 313 (556)
T KOG1467|consen 241 GLQYALGK-ISGSNAR--CIAMLQAFQEVIKDYTTPPEK----TLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKNE 313 (556)
T ss_pred HHHHhhcc-cCCccHH--HHHHHHHHHHHHHhccCCCcc----ccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHHH
Confidence 33333333 3344444 499999999999999999987 5667888888888887776689999999999966322
Q ss_pred ---CC---Cc---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhh
Q 000073 1398 ---LT---IA---SELLEQAVQLVTNDNLDLGCAVIEQAATDKAI-----------QTIDGEIAQQLSLRRKHR 1451 (2421)
Q Consensus 1398 ---~~---~~---~~~~E~~i~~~vnDNldLac~iIEKaA~EKAi-----------~eIde~l~~~~~~RR~hr 1451 (2421)
+. ++ ++.+-..|..-+++++.+|-..|-+.|.+|.- .-++..|..+-+.+++.|
T Consensus 314 I~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~fr 387 (556)
T KOG1467|consen 314 ISKLPISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFR 387 (556)
T ss_pred HhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceE
Confidence 22 21 45556668889999999999999999999842 234555666665444444
No 8
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=80.26 E-value=5.2 Score=46.26 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=80.3
Q ss_pred hHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHH---HHhhhcccCCcchHHHHHHHHHhCCh---hHHHHHHHHHHH
Q 000073 973 KISFIINNISALNVEAKAKEFTEILKEQYYPWFAQY---MVMKRASIEPNFHDLYLKFLDKVNSK---ALNREIVQATYE 1046 (2421)
Q Consensus 973 KI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~Y---LV~kRasiEPN~H~LYl~fLd~l~~~---~L~~~Vl~eTy~ 1046 (2421)
||.-++|-+|..|++.-++++.+..... .++...+ ++.++|..+|+|..+|..++..+... .+-..+++.+..
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~-~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~~~ 81 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSD-DPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRCQE 81 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 6778999999999999999999998776 4454444 34678999999999999999998743 556666666666
Q ss_pred HHHHHh-cccccccChHHHHHHHHhhhhhhhhhhhc
Q 000073 1047 NCKVLL-GSELIKSSSEERSLLKNLGSWLGKLTIGR 1081 (2421)
Q Consensus 1047 ~i~~LL-~Se~~~~ss~eRslLKNLGsWLG~iTLar 1081 (2421)
.+.... ..+.......++...+|+.-+||.+....
T Consensus 82 ~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~ 117 (209)
T PF02854_consen 82 EFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFG 117 (209)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhc
Confidence 554411 01222345677888899999999887643
No 9
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=39.39 E-value=1.9e+02 Score=30.68 Aligned_cols=71 Identities=15% Similarity=0.322 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHhhcCCccccchhHHhHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000073 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (2421)
Q Consensus 686 sI~~iv~~L~r~K~S~~~rdqdiFaCMih~LFdEYrFf~~YP~~eL~~TAvLFG~lI~~~Lv~~~~L~iALr~VLeAlr~ 765 (2421)
..+|.+..+++++-+ ....++..-+|+..+|+ =..+-..++.|+..+++.++++...+.-|+.-+++.+.+
T Consensus 17 d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~-------~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~D 87 (113)
T PF02847_consen 17 DVDEAVECLKELKLP--SQHHEVVKVILECALEE-------KKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLESLED 87 (113)
T ss_dssp -HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTS-------SHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhh
Confidence 678888888887666 56677888888888887 345566699999999999999999999998888877754
No 10
>COG5088 SOH1 Rad5p-binding protein [General function prediction only]
Probab=33.98 E-value=86 Score=33.07 Aligned_cols=89 Identities=24% Similarity=0.339 Sum_probs=66.1
Q ss_pred ccHHHHHHHHHHHhhhcchhHhHHHHHhhhcccCCcchHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcccccccChHH
Q 000073 984 LNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEE 1063 (2421)
Q Consensus 984 ~Nl~~K~~Elk~~L~~~y~~WFA~YLV~kRasiEPN~H~LYl~fLd~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ss~e 1063 (2421)
+-+|-.++=+.-+-.+.|..|+++.=.-+ -+|| .-|++.++--.+|+--++|+--|.--|-.||++......-+|
T Consensus 15 sRFE~ELEFvQ~L~Np~Yl~~Ltq~~~fe----se~F-~~YL~YlEYWr~PeYs~fivYP~CL~iL~lLn~~~~~~~vs~ 89 (114)
T COG5088 15 SRFEVELEFVQSLANPQYLTLLTQQQIFE----SENF-KNYLKYLEYWRNPEYSQFIVYPNCLFILKLLNGFMESAIVSE 89 (114)
T ss_pred chhHHHHHHHHHhcCHHHHHHHHHhhhhc----CHHH-HHHHHHHHHhhCCcccceeechhHHHHHHHhcchhHhhhhhh
Confidence 44444444444444678888888754433 2344 569999999999999999887777778889998887777889
Q ss_pred HHHHHHhh-----hhhhhh
Q 000073 1064 RSLLKNLG-----SWLGKL 1077 (2421)
Q Consensus 1064 RslLKNLG-----sWLG~i 1077 (2421)
-.++|.|| -|||+.
T Consensus 90 ~~l~~~l~e~qy~~Wlnk~ 108 (114)
T COG5088 90 DGLLEGLDELQYPQWLNKM 108 (114)
T ss_pred hHHHHhhhHHHHHHHHHHH
Confidence 99999998 488764
No 11
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=33.25 E-value=1.1e+02 Score=31.28 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHhhhhhchHHHHHHHHHHHHhccchhhHHHHhhhcccccCCCCCCCchHHHHHH
Q 000073 7 TVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVA 70 (2421)
Q Consensus 7 ~~~~qi~~Lv~~l~k~n~~~~~~el~qlv~~G~ea~~~~L~~~l~~~~~~~~~~k~~~~~~Ll~ 70 (2421)
+...+|+.+++.+-++||+..+..+.+++.-|+.+.- +++.+.+.+--. +.++..|..++.
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~-Il~~l~~~l~~~--~~~~~~k~~i~~ 63 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELLVEGYSASD-ILKQLHEVLVES--DIPDSQKAEILK 63 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHH-HHHHHHHHHHTS--TSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHh--hccHHHHHHHHH
Confidence 3578999999999999999999999999966999985 888888766333 455666665544
No 12
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.27 E-value=3.2e+02 Score=36.60 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=23.8
Q ss_pred hhccCCChhhHHHHHHHHHHHHHHHhh
Q 000073 1347 LKDYAMESDETRIYNAAHLMVASLAGS 1373 (2421)
Q Consensus 1347 ~KDFA~E~DE~kmr~AAh~MVr~LAgS 1373 (2421)
.+-|++.+||+.||.=...|-+.|-+=
T Consensus 404 ~~G~~L~~~EE~Lr~Kldtll~~ln~P 430 (508)
T KOG3091|consen 404 KRGYALTPDEEELRAKLDTLLAQLNAP 430 (508)
T ss_pred ccCCcCCccHHHHHHHHHHHHHHhcCh
Confidence 678999999999999999998887654
No 13
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=27.21 E-value=99 Score=39.54 Aligned_cols=61 Identities=25% Similarity=0.461 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHhhhhhhcCCCCCchHHHHHHhHHHHHHHHH------------hcchhHHHHHhHhhhccCCCCccc
Q 000073 2088 GWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLL------------HDFPEFLCDYHFTFCDVIPPSCIQ 2155 (2421)
Q Consensus 2088 GW~~~~~LL~~Ll~Fl~~~L~~~~ls~~i~~lYkGtLRilLvLl------------HDfPeFL~~yh~~lc~~IP~~ciQ 2155 (2421)
-|..+..+|-+++++.+||-- ..++|+||..+-... +|||+||-. -+-++.-
T Consensus 127 ~l~~v~~~l~~~lr~fGpF~s--------~~IikSTLdFv~g~~iEq~nf~~~p~A~~fP~ylR~-----ksGl~E~--- 190 (357)
T cd00686 127 WWALVNEHFPNVLRHFGPFCS--------LNLIRSTLDFFEGCWIEQYNFGGFPGSHDYPQFLRR-----MNGLGHC--- 190 (357)
T ss_pred HHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHhhhccCCCCCCcccchHHHh-----ccCCcce---
Confidence 377777888888888888865 568899998865442 488888743 3334332
Q ss_pred cccceecccCCC
Q 000073 2156 MRNIILSAFPRN 2167 (2421)
Q Consensus 2156 LRNlILSA~P~~ 2167 (2421)
.-.+.||+.
T Consensus 191 ---yA~FiFPk~ 199 (357)
T cd00686 191 ---VGASLWPKE 199 (357)
T ss_pred ---eEEEecchh
Confidence 356778875
No 14
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.64 E-value=4e+02 Score=28.36 Aligned_cols=71 Identities=13% Similarity=0.279 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHhhcCCccccchhHHhHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000073 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (2421)
Q Consensus 686 sI~~iv~~L~r~K~S~~~rdqdiFaCMih~LFdEYrFf~~YP~~eL~~TAvLFG~lI~~~Lv~~~~L~iALr~VLeAlr~ 765 (2421)
..+|.+..+++++-+ ....++....|+--+||= .++-..++.|+..+.+.++++...+.-|+.-+++.+.+
T Consensus 17 D~~ea~~~l~~L~~~--~~~~~vv~~~i~~~le~~-------~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~d 87 (113)
T smart00544 17 DTDEAVHCLLELKLP--EQHHEVVKVLLTCALEEK-------RTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIED 87 (113)
T ss_pred CHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCC-------ccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChh
Confidence 678888888888766 478889999999989982 34566699999999999999999999999999988876
Done!