Query 000075
Match_columns 2419
No_of_seqs 206 out of 288
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 16:49:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5103 CDC39 Cell division co 100.0 2E-295 5E-300 2690.3 109.1 1920 6-2406 25-1991(2005)
2 KOG1831 Negative regulator of 100.0 9E-289 2E-293 2699.0 94.1 1476 532-2407 82-1578(1591)
3 PF04054 Not1: CCR4-Not comple 100.0 2E-114 5E-119 1062.9 30.6 366 2023-2398 1-379 (379)
4 PF12842 DUF3819: Domain of un 100.0 4.8E-46 1E-50 405.0 17.7 145 1308-1452 1-147 (147)
5 KOG1831 Negative regulator of 97.2 0.27 5.8E-06 68.7 31.5 294 1010-1436 658-952 (1591)
6 smart00543 MIF4G Middle domain 91.8 1.4 2.9E-05 51.1 11.9 179 972-1161 2-195 (200)
7 KOG1467 Translation initiation 83.1 3.6 7.7E-05 53.2 8.4 127 1318-1451 241-387 (556)
8 PF02854 MIF4G: MIF4G domain; 82.2 4.5 9.7E-05 46.8 8.5 108 973-1081 3-117 (209)
9 PF02847 MA3: MA3 domain; Int 39.1 1.9E+02 0.0041 30.7 9.7 71 686-765 17-87 (113)
10 COG5088 SOH1 Rad5p-binding pro 36.5 77 0.0017 33.4 5.7 89 984-1077 15-108 (114)
11 PF08542 Rep_fac_C: Replicatio 27.9 1.3E+02 0.0028 30.6 5.9 62 7-71 3-64 (89)
12 cd00686 Terpene_cyclase_cis_tr 24.6 1.2E+02 0.0026 38.9 5.7 61 2086-2165 127-199 (357)
13 smart00544 MA3 Domain in DAP-5 21.6 4.1E+02 0.0088 28.3 8.5 71 686-765 17-87 (113)
No 1
>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
Probab=100.00 E-value=2.2e-295 Score=2690.28 Aligned_cols=1920 Identities=27% Similarity=0.403 Sum_probs=1492.7
Q ss_pred CCcHHHHHHHHHhhhhhchHHHHHHHHHHHh-hccchhhHHHhhhhccc--ccCCCCCCCch---HHHHHHHHHHHhhcC
Q 000075 6 STVPSQIRFLLQSLNEANADSVFRELCQFIE-YGIEGSTMMLQTCMDHL--NLHGTGLKNPQ---LESVVASVFKYIMDK 79 (2419)
Q Consensus 6 ~~~~~qi~~l~~~~~~~n~~~~~~el~~~~~-~g~~~~~~~l~~~~~~~--~~~~~~~k~~~---~~~ll~~~~~~ll~k 79 (2419)
+.+-+||.+|++.|++.||++.-+||.|+++ ..++--+|++|.++-.- +.-+ .+|... --.+|-+|++.++.|
T Consensus 25 sIV~AQI~fLlsTL~eDqydt~~eqIRqlinkna~~vY~~~~rRLiq~nS~~If~-tGK~~~~~a~~~~LL~Elks~~~K 103 (2005)
T COG5103 25 SIVKAQILFLLSTLREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQGNSYRIFG-TGKSSDGLATYKLLLDELKSLTKK 103 (2005)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHccCCcHHHHHHHHHHhcccchhhhc-cCcccchhHHHHHHHHHHHhhhhh
Confidence 4677999999999999999999999999997 89999999999999533 3222 244333 457888999999987
Q ss_pred CCccchhhhhccCcccCHHHHHHHHhhcCCCchhHHHHhhhhccCCChHHHHHHHHHHHHHHHHHhcC----CCC--CCC
Q 000075 80 PNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCAN----PVP--MNS 153 (2419)
Q Consensus 80 p~f~t~~c~A~~~~~~~~~~l~~l~~~L~ls~~q~v~~~laL~~s~n~~~~~~~~~f~~~~i~~l~~~----~~~--~~s 153 (2419)
-. ..|+.+.. ++-|+++ ++ |..+||.++ .++...-.+. | |++ +..
T Consensus 104 r~-----sD~Is~~d--sevFed~----~F----Q~siGlT~S-------------Ll~n~Fqs~~-Nq~~~~t~qqS~d 154 (2005)
T COG5103 104 RF-----SDAISGSD--SEVFEDF----HF----QFSIGLTTS-------------LLKNTFQSLL-NQLSDPTQQQSID 154 (2005)
T ss_pred hh-----hhHhhcch--hhhhcch----hh----hhhhhhhHH-------------HHHHHHHHHH-hhccchHhhhhcc
Confidence 54 66776641 2223333 11 111444444 2222222222 1 111 110
Q ss_pred HHHHHHHHHHHhhcCchhH-hHHHHHHHHHhhcCCCCCCccccCCcCCcccccccccccccccCCCCcchHHHHHHhhcc
Q 000075 154 AEQIQNIIMFLQRSSDLSK-HVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKE 232 (2419)
Q Consensus 154 ~~~lh~il~~l~~~~gl~~-~~~~f~~~l~~~~~~~~~~~~l~Pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (2419)
-+-+ -.|++ |-.. ...-|.+.+.-.--+ +.++.. +.+.++.+- +.
T Consensus 155 ~NDl----d~lr~--~~Tdydr~~f~q~i~~~Le~-------------------s~~~~~-~~~p~e~~~-~~------- 200 (2005)
T COG5103 155 KNDL----DLLRE--GTTDYDRKIFRQEIKDVLEK-------------------SDPLTA-LFGPREVDR-SF------- 200 (2005)
T ss_pred cchH----HHHhc--CCchHHHHHHHHHhHHHHHc-------------------CCchhh-hcCcchhhH-HH-------
Confidence 0000 00111 2110 001122211111000 001000 000011000 01
Q ss_pred CcHHHHHHhhCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccCCccCccchhhHhhhccCCCCCCCCCCCCCCH
Q 000075 233 MSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNV 312 (2419)
Q Consensus 233 ~sl~~~i~elG~~~t~s~~~c~~~L~~~~~l~~~~va~vlg~ma~t~sgl~d~~~~~~~~~~~~~~~~~~~~~~~~~Wn~ 312 (2419)
|++. ..++|+-.+.-++.|||+.+-.|+.- ++.+.||.
T Consensus 201 --l~~~--------------l~~Il~P~~~~~~~dvar~il~~~~~--------------------------~D~~~w~~ 238 (2005)
T COG5103 201 --LDDA--------------LQRILRPRREVVPEDVARAILFMADF--------------------------PDRGEWNL 238 (2005)
T ss_pred --HHHH--------------HHHHhCCCccCCcchHHHHHhhhhhc--------------------------ccccccch
Confidence 1111 23445534457888999985444422 22567999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHhcCCCCCCCCChhhHHHHHHHHhhh-cCCCccccccccCcccCchh-hHHHHHHHhhCC
Q 000075 313 DVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYA-CQEPFPLHAVCGSVWKNTEG-QLSFLRYAVASP 390 (2419)
Q Consensus 313 ~vlv~alk~~~p~lnW~~Vi~~lD~~~f~i~d~~~l~ll~~~~~~~-~~~~Fpi~~l~~~~W~N~~~-Qlsfl~~~l~~p 390 (2419)
-..+.+++..+..+||.+|..+||.+.|.|+.......++.+|-.+ .+.+||.+.+|. .|||... |+++.-|..+.+
T Consensus 239 v~~~~a~~s~~e~iNW~~v~s~f~~~~F~i~~l~p~~v~~~c~f~~~~~~~v~~eff~~-~Wkn~~~~~l~i~lhi~s~~ 317 (2005)
T COG5103 239 VAIVGAMKSNLEEINWRDVYSCFLDVNFSIWTLEPLYVIIDCWFYISGIITVPYEFFFK-RWKNERAQILFIRLHIESDE 317 (2005)
T ss_pred HHHHHHHHhhhhhcCHHHHHHHhcCcceeeccCcchHHHHHHHHHHhcCCCccHHHHHH-HhcchhhhhHhhheeeeecc
Confidence 9999999999999999999999999999999777777766666554 567899999995 9999999 555556666777
Q ss_pred CcccccCc-CccccccccCCCCccccc-cccccccchHHHHHHHHHhhhcCchHHHHHHhhhhhhcChhHHHHHhhcc--
Q 000075 391 PEVFTFAH-SARQLPYVDAVPGLKLQS-GQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHI-- 466 (2419)
Q Consensus 391 ~~~f~f~~-~~~~~v~~d~~~~~~~~~-~~~~~~W~sldL~e~L~~Lae~~~~~~v~~l~e~p~~~~pe~lllgl~~i-- 466 (2419)
...|+... .+.+.|..+...+.+... -...+++||.+|++++. +++.....-..++| +...||++.+||..+
T Consensus 318 ~~~fd~~Nv~~tr~Vs~~~~~~~~~~ny~~~~snlNc~el~Q~~~-l~~~p~i~y~~~lF---lN~~pE~~~a~L~~~~~ 393 (2005)
T COG5103 318 KRTFDYSNVFFTRIVSIEDSRGHRFKNYMGYESNLNCVELFQCIM-LGSLPLIEYIARLF---LNKSPEWCAAGLGFVQP 393 (2005)
T ss_pred cchheecccceeEEEeeecCchHHHHHHHHHhcccCHHHHHHHHH-hccchHHHHHHHHH---hccCHHHHHHHHHHhhh
Confidence 77788754 345555554443333222 24779999999999994 44332222233466 788999999999754
Q ss_pred ---CcchhHHHHHHHHhhhHHHHcC-CCchHHHHHHHhhCChhHHHHHHHhhhcCCccHHHHHHHHHHhhhHHHHhhcCC
Q 000075 467 ---NTAYNLIQYEVSFAVFPMIIKS-TMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIP 542 (2419)
Q Consensus 467 ---~~~~~~l~~ell~~lf~~fl~~-~~~~~vi~~lW~~~~~~~~~~l~d~y~~d~~~l~rIldvaqelk~L~~lL~~~p 542 (2419)
+-.||+.+.+.+...+-+++.| .++++|+..+.+.+|+++++...-...+|...++|++|+.-|+|.|+.+.|..|
T Consensus 394 ~f~~L~~N~v~~s~if~~ll~~f~n~~p~sFvfv~~~rT~p~~~~~~~r~v~~kd~~pv~~~l~~~le~~~l~~V~n~lP 473 (2005)
T COG5103 394 KFSPLAWNPVQESRIFEELLMGFANGAPNSFVFVVLFRTHPEMMLQKSRLVLAKDGIPVSRLLDIFLEHKMLPLVSNLLP 473 (2005)
T ss_pred hhhhhhcCchHHHHHHHHHHHHHhcCCCCceEEEEEEecCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCchhhhhhcCC
Confidence 4479999998888877777755 588999999999999999999987789999999999999999999999999999
Q ss_pred chhHHHHHHHhhcccccCHHHHHHHHhhcCcc-h----HHHHHHHHHHHHhhcccccccCCCCCCCcccccccchhHHHH
Q 000075 543 SPFAIRLAVIASQKELVDLEKWLSINLSTYKD-V----FFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVI 617 (2419)
Q Consensus 543 f~FaidLA~lAsrre~l~LekWL~~~l~~~~~-~----f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~etv~~l 617 (2419)
..|++|+++|++.|+.++|..|+..++....+ + |+...++||+.|+.......+.+ ..+-+ ++..|+-.+
T Consensus 474 ~~f~~~i~vL~~aR~~l~~~~Wl~~~~~~~~dad~~NVfvv~~~~~l~sk~s~~k~p~~q~---ee~~~--f~~~tviei 548 (2005)
T COG5103 474 PEFCFDIIVLSSARDHLNLGIWLSNNLTTRKDADGLNVFVVSLVQYLDSKVSKHKEPEKQK---EESVM--FPLNTVIEI 548 (2005)
T ss_pred HHHHHHHHHHHHHHHhcchhhhcccCceeeecCCcccchHHHHHHHHHHHHhhcCChhhhc---cccee--eehhhHHHH
Confidence 99999999999999999999999999987665 3 99999999999997543311110 11223 344555555
Q ss_pred HHHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCCCC-CC-----CCCCCChhhHHHHHHHHHHHHhccCCCHHHHH
Q 000075 618 LKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAA-DS-----STSEGYADDIEAEANSYFHQMFSGQLTIEAMV 691 (2419)
Q Consensus 618 L~~L~~~~~~~~s~~l~e~l~~v~~~~i~~~PrL~n~~~~-d~-----~~~~~~~~dIE~Ean~yfqkmYs~eisI~~iV 691 (2419)
|..+..... +-.+.++.++..|++.||||++.+.+ |+ .+.++++.|||+||.+|+|+||+++++|+++|
T Consensus 549 l~t~~~~V~-----q~~~~~k~~~~~~l~~fprli~~G~~~Ds~v~at~tt~s~~~dIE~E~~sy~q~~y~~~~~I~~~I 623 (2005)
T COG5103 549 LGTFTKAVE-----QYIRILKPETVVVLNEFPRLIPHGLRRDSIVAATNTTRSKEIDIEEEASSYIQQIYNSQRGIESSI 623 (2005)
T ss_pred HHHhHHHHH-----HHHHhcCcceEehHhhhhhhccCCCCcchhhhccCcccccCccHHHHHHHHHHHHHHhcccHHHHH
Confidence 555433221 11567788888999999999998754 43 35678999999999999999999999999999
Q ss_pred HHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCCCCCcc
Q 000075 692 QMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKM 771 (2419)
Q Consensus 692 ~~L~r~K~S~~~rdqdvFaCMIh~LFdEYrFf~~YP~~eL~iTAvLFGslI~~~Lv~~~~L~iALr~ILeAlrkp~~SkM 771 (2419)
+.||+|++|++|||+|+|+|+.|.|||||+||++||.++|++|||||||||+++|+++.+|++|+|||..++++|++|||
T Consensus 624 ~~l~~f~~senprd~elfsci~hal~~ey~ff~dyPl~ALaltavLfGslI~f~ll~~~~L~vA~ryI~~~lk~P~~skm 703 (2005)
T COG5103 624 NQLKEFLRSENPRDKELFSCIFHALLEEYGFFYDYPLSALALTAVLFGSLIKFRLLPKPYLRVAIRYIKGSLKHPENSKM 703 (2005)
T ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCcc
Q 000075 772 FVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVS 851 (2419)
Q Consensus 772 f~FGiqAL~qF~~RL~EwPqyC~~Llqip~L~~~~p~l~~~ie~~l~~~~~~~~~~~~~~~~~~~q~~~~q~~~~~~~~~ 851 (2419)
|+||+|||++|+.||++||+||+.++.||.|+. .|++|+.|-.+.. ..+. .+
T Consensus 704 f~Fg~qal~~Fq~kLp~Yp~yc~~vl~ip~l~~-r~~iy~sivem~s----~eNt-------~~---------------- 755 (2005)
T COG5103 704 FSFGFQALEVFQEKLPSYPSYCSEVLEIPTLNN-RILIYKSIVEMDS----NENT-------EV---------------- 755 (2005)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhccccccc-chHHHHHHHHHHh----ccCC-------cc----------------
Confidence 999999999999999999999999999999965 8999998855432 1100 00
Q ss_pred CCcccccccchhhhHHhhhcccccccccccccccCCCCCCCccccCCCCCcccCCCCCchhhhhcccCCCccccccCCCc
Q 000075 852 GSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGF 931 (2419)
Q Consensus 852 ~~~~~~~~~~~~~~~~~qq~~~g~l~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 931 (2419)
++ +++.+|. ++-. .|
T Consensus 756 --------------------------Ek-------a~p~~pm---~pl~-----------------------------~f 770 (2005)
T COG5103 756 --------------------------EK-------ANPTHPM---LPLE-----------------------------DF 770 (2005)
T ss_pred --------------------------cc-------cCCCCcc---cchh-----------------------------hh
Confidence 00 0111111 1000 00
Q ss_pred cCCCCCccccccccccchHHHHHHhhhcCCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHHh
Q 000075 932 ARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVM 1011 (2419)
Q Consensus 932 ~~~~~~~~~~~~~~~~nI~tL~~a~e~~~~~~e~P~e~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~YLV~ 1011 (2419)
++- -+ +-+...|--++|+..+|+|.+||++..|+..|++|+|+.|+|.|.+||+.|||.
T Consensus 771 v~~-------~v--------------~c~~n~Eg~~~evV~~iLFaiNNl~~ln~n~ki~~lk~~Ltp~y~~wfs~y~vt 829 (2005)
T COG5103 771 VRL-------IV--------------KCDANNEGRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVGWFSIYMVT 829 (2005)
T ss_pred hee-------Ee--------------ccccCccccHHHHHHHHHHHhhhHHhhhccchHHHHHHhcCcccccceeeEEEE
Confidence 000 00 001223445677788899999999999999999999999999999999999999
Q ss_pred hhcccCCcchHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhcchhhccChHHHHHHHHhhhhhhhhhhhcCcccccCCCC
Q 000075 1012 KRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREID 1091 (2419)
Q Consensus 1012 kRasiEPNfH~LYl~fLd~l~~~~L~~~Vl~eTy~ni~~LL~Se~~~~ssseRslLKNLGsWLG~iTLarNkPI~~k~ld 1091 (2419)
+|++.|||||+||.++++.++++.||+.+.+.|.+.++.||+...- +.+|+++|||||+|||+|||||||||+|+++|
T Consensus 830 qR~~~e~n~~~ly~kvve~lgS~dly~~~~r~TL~~l~~ll~~~~e--s~~ekk~lKnLgswLG~ItLa~NkpIt~~q~~ 907 (2005)
T COG5103 830 QRSTAEENCRRLYGKVVERLGSKDLYLRFSRKTLEFLKMLLDYRCE--SPSEKKVLKNLGSWLGRITLAKNKPITSEQFD 907 (2005)
T ss_pred eeccccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhcccc--ChHHHHHHHHHHHHHhHHHHhhcCcccccccc
Confidence 9999999999999999999999999999999999999999997644 88999999999999999999999999999999
Q ss_pred hhhHHHHHHhcCceEEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCccccc
Q 000075 1092 PKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIT 1171 (2419)
Q Consensus 1092 ~K~LL~eaY~~g~L~~VIPFV~KVLe~c~~S~vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ld~~di~ 1171 (2419)
||++|+|||+.||+..|||||||||++++.|+||||||||+||||+||.|||+++++||+||||||+|+||||++++.||
T Consensus 908 Fk~~lve~~~~~Ri~~vvpFV~k~L~~as~s~IFkPpNPW~mgILkLL~El~~~a~~~l~lkFEie~Ll~~lnv~~~~ik 987 (2005)
T COG5103 908 FKKFLVESVECRRILFVVPFVSKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLLRHLNVELVPIK 987 (2005)
T ss_pred HHHHHHHHhhcCceEEeehHHHHHHHhcccceEecCCCchHHHHHHHHHHHHhcCcceeehhhhHHHHHHhcceeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhh---ccCCCCCCCCCcCCCCCcccCCCCccccCCCCCCCCCCCcCCCCCCCCCcccccccccccccCcCc
Q 000075 1172 PTSLLKDRKRE---IEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGT 1248 (2419)
Q Consensus 1172 ps~~L~~r~~~---~~~~~d~~~~~~~~~q~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~ 1248 (2419)
|++.++++... ++. .+||. -++ ++.|.++ .+++||...
T Consensus 988 Ps~~~~n~~V~ks~LEk---------------e~~Ed------vL~-a~~~d~~----------~~~~qyi~~------- 1028 (2005)
T COG5103 988 PSKSLGNHLVLKSRLEK---------------ELPED------VLN-AKFPDGT----------DYLAQYIIE------- 1028 (2005)
T ss_pred hhhhhCcHHHHHHHHhh---------------hchHH------HHh-hhccccc----------hHHHHHHHH-------
Confidence 99999876531 110 11110 000 0111000 123343310
Q ss_pred chhHHHHhhccCCCCCCccccccccCCCCCCCcccccccCCCCCCceEEecccccccccchhhhhhHHHHHHHHHHhhhh
Q 000075 1249 LMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVS 1328 (2419)
Q Consensus 1249 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~~ip~l~~~~~i~~~l~~~~~~p~Lk~iV~~AidRAIrEII~ 1328 (2419)
+. +..+..|..+ .+...| -|.+|++.++|++.+||||++
T Consensus 1029 ---~s------------------------Sq~TvtD~va-------~~~g~P-------~PaiK~~~Qlal~~SVrEI~~ 1067 (2005)
T COG5103 1029 ---DS------------------------SQITVTDLVA-------RHVGSP-------KPAIKNLTQLALDLSVREICG 1067 (2005)
T ss_pred ---hh------------------------hcchHHHHHH-------HHcCCC-------ChHHHHHHHHHHHHHHHHHHH
Confidence 00 0011111000 001111 289999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 000075 1329 GIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQA 1408 (2419)
Q Consensus 1329 PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si~~~Lr~ll~~~~~~~~~~E~~ 1408 (2419)
.|||||+.||++||+.|++||||||.|+.++..||++||++|||+||+|||+|||++.|.++.|++..++.+....+.++
T Consensus 1068 aVVeks~gIAi~Tt~~l~~KDFa~ev~~s~l~~aar~Mv~~La~~La~vT~~EPlk~~i~~n~rs~a~~l~sv~~~~ae~ 1147 (2005)
T COG5103 1068 AVVEKSCGIAIQTTMALFKKDFAMEVEKSMLYVAARNMVVNLAKFLALVTAQEPLKACISGNVRSYAMKLCSVLDFSAEK 1147 (2005)
T ss_pred HHHHHhccchhhHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhccHHHHHHHHhhhhhchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877666778888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcCcccccccccCCCCCCCCCCCCCChhHH
Q 000075 1409 VQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQ 1487 (2419)
Q Consensus 1409 i~~~vnDNldLac~iIEKaA~EKAv~eIde~l~~~~~~RRkhre~-~g~~f~D~~~~s~~~~~LPE~LrlkpgGl~~~Q~ 1487 (2419)
+..++++|++.||.+||||+++|+.++|+..|+.++..|||||++ ++.||+|+++ +..+++||++|+++-||+||+|+
T Consensus 1148 vd~~~~eN~~va~~lIe~a~~~k~~~~i~aei~h~Iv~R~~Hrktt~n~PFvd~aa-a~~slnLps~L~ls~~~~Tpqqf 1226 (2005)
T COG5103 1148 VDKIAMENQDVACRLIERAGVSKVSESISAEIEHMIVERVRHRKTTPNLPFVDPAA-ANLSLNLPSSLELSIGKATPQQF 1226 (2005)
T ss_pred HHHHHHhchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCccCccc-CccccCCCcccccccCCcCHHHh
Confidence 999999999999999999999999999999999999999999998 7899999997 55568899999999999999999
Q ss_pred HHhhhhhcCccCcCCCCCCcccccCccCCCCchhhhhcccCCCCCCCCCCcCCCCCCCccccCCCcccCCCCcccccccc
Q 000075 1488 RVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGF 1567 (2419)
Q Consensus 1488 ~VYEdF~r~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 1567 (2419)
++||||.|+|-..- .+|.+..+..+ -...+++ ++++ + |.++. +..+.
T Consensus 1227 ~lyE~fD~l~ls~i---~~h~~~~~~n~----------~~Td~ad---------stda---l--~~nl~------nt~e~ 1273 (2005)
T COG5103 1227 SLYEDFDRLSLSTI---MGHIEKIAINA----------IDTDSAD---------STDA---L--NNNLN------NTVEN 1273 (2005)
T ss_pred hhhhcccccccccc---ccccchhhhhh----------hcCChhh---------hhhh---h--ccccc------hhhhh
Confidence 99999999763221 22222111100 0000000 0000 0 00000 00000
Q ss_pred cccccccccCCCCCcccccccccccccCchhhhhhcccCCCCCCCCCCCCCCCCCCCcchhcccccccCccchhhhhHHH
Q 000075 1568 LSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDK 1647 (2419)
Q Consensus 1568 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~le~ 1647 (2419)
-..|+++..+. +... ++ .+..+. .++.+.++++..++ + .
T Consensus 1274 eAnQta~~yq~-----------n~L~-i~---~ql~Ql----~~~~Py~~~~~V~a------------------D----~ 1312 (2005)
T COG5103 1274 EANQTALEYQE-----------NLLI-IK---AQLVQL----SKKIPYSSKKNVIA------------------D----E 1312 (2005)
T ss_pred HHHHHHHHHHH-----------Hhhh-hh---hHHHHh----cccCCcchhhcCcc------------------h----h
Confidence 00000000000 0000 00 000000 00111111111111 0 0
Q ss_pred HHHHHHHHHHHhhcCcccchhhhhhhHHHHHhccChhHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHhHHHHH
Q 000075 1648 YHIVAQKLDALIGNDAREAEGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVK 1727 (2419)
Q Consensus 1648 ~~~~~~~l~~l~~~~~~~~~~~i~ev~~~i~~~~~rde~al~~aqki~~~L~~~~~~~l~~e~~~~~L~~L~~~~~~~~k 1727 (2419)
.|-. +.+... -.+.++++|...|.+ .|+.++.++|.+++.|+..+.+++++||+.++||+||++|-+++|
T Consensus 1313 e~~~---lkE~~N----Q~~t~~~~Il~~Ia~---sd~~~l~c~q~c~~il~~~skSp~~~evls~~lEkic~~S~kt~k 1382 (2005)
T COG5103 1313 EHGL---LKEGKN----QFETVFRRILESIAS---SDDKDLECIQLCRYILGHLSKSPSKEEVLSRCLEKICKISFKTQK 1382 (2005)
T ss_pred hhhH---HHhhHH----HHHHHHHHHHHHhcc---chhhHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHhHhHHHhh
Confidence 1111 111100 012455555555544 499999999999999999999999999999999999999999999
Q ss_pred HhHhhhcccccccccCHHHHHHHHHhCCCChhHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCchhh-HhhHHHHHHH
Q 000075 1728 ELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVV-ISELHNLVDA 1806 (2419)
Q Consensus 1728 evt~wl~~~~d~rk~Nv~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~~~~~~-~~df~~tlea 1806 (2419)
+|.||++|+.|.||||+|+|.+||++|||+..|||.+|++.|.+.. ..++|||+.|++.++.+|.++. ..||.+|+|.
T Consensus 1383 ~V~~wl~ysnD~rKfnip~I~slie~nli~~~E~D~~l~r~i~~~~-gnvtdFai~Ll~~~V~~e~pi~~~~dFI~tLe~ 1461 (2005)
T COG5103 1383 EVLGWLIYSNDPRKFNIPLIGSLIEHNLINVVEYDQALSRKIPLAD-GNVTDFAIALLASLVTAEVPICTVYDFICTLEM 1461 (2005)
T ss_pred hhheeeeecCChhhcCcHHHHHHHHhccchhhhHHHHHHhhccccc-cchHHHHHHHHHHHhccCCceeeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997543 4489999999998888777654 5999999988
Q ss_pred HHHHHcCCCChhHHHHHHHHHhCcccccCCCCCCccccchhhhhhcccccccCcccCccCCCCCCCCCCCCCChHHHHHH
Q 000075 1807 LAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSM 1886 (2419)
Q Consensus 1807 L~~l~~~~~~~~~l~~l~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~eq~~~ 1886 (2419)
|+.-. + +.++++.+++.+... ..+..| ....+.||+..
T Consensus 1462 la~s~----d-~~vk~f~~~~~~tm~---------------------~~v~kg----------------nKqq~ndqi~i 1499 (2005)
T COG5103 1462 LAGSS----D-PKVKDFFQKISNTMM---------------------HIVAKG----------------NKQQLNDQIII 1499 (2005)
T ss_pred HhccC----C-hhHHHHHHHHHHhhh---------------------hccccc----------------ccccccceEEE
Confidence 76432 2 455777666642100 001011 11346799999
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHcCcccCCchhHHHHHHHHHHHHHHhhhccccCCCCCCCCCccccccchhhhH
Q 000075 1887 LFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDI 1966 (2419)
Q Consensus 1887 lF~EWv~l~~~~~~~d~~~~~Fi~qL~~~giL~~dd~~~~FfR~~~E~sV~~~~~~~~~~~g~~~~~s~~~~~~f~~iDA 1966 (2419)
+|.|||++.++...+|..-..|+.||+++|+++.+++...|||+.+|.+|..|.+.. +.+.+|..|||
T Consensus 1500 Vf~ewv~llrn~~~nD~v~~~F~~ql~e~g~~s~~~~~~~ffk~sle~~i~aF~e~~------------pta~~y~~IDa 1567 (2005)
T COG5103 1500 VFSEWVELLRNCRFNDTVPEMFLPQLMERGDYSASLDIRSFFKVSLEHFIRAFHERI------------PTAYCYLKIDA 1567 (2005)
T ss_pred eeHHHHHHHHhcccccccHHHHHHHHHHccCCCchHHHHHHHHhhHHHHHHHHhhcC------------Ccccceeeccc
Confidence 999999999999999999999999999999999999999999999999999997432 24799999999
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHhhcCCCCCCCcchHHHHHHH
Q 000075 1967 YAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAF 2046 (2419)
Q Consensus 1967 ~akLi~~lvk~~~~~~~~~k~~~L~kiL~iiv~vl~~dhe~~~~~FnqRpyfRlfs~LL~el~~~d~~l~~~~~~il~~f 2046 (2419)
|+.||+.++++. +..+.++..|++||++++++|++++|..+++.||+|+||||||++|.||.......++.-..+.+.|
T Consensus 1568 l~sLi~n~l~~e-G~te~T~s~~~~kii~~i~~VFae~h~~~~e~~h~~~fFrLfS~il~e~~dv~~~d~s~fv~~~Sv~ 1646 (2005)
T COG5103 1568 LPSLIKNRLYEE-GSTEGTVSVLFRKIIKDILFVFAEAHRKRAEFVHNYLFFRLFSRILIETLDVIDEDTSCFVNNRSVV 1646 (2005)
T ss_pred hHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhhhhhccchhhhhhHHHH
Confidence 999999999996 4455678899999999999999999999999999999999999999999875544455556788999
Q ss_pred HHHhhhcCCCCCCchhHHHhHHhhcccchHhhhcCCCCCChHHHHHHHHHHHHhhhhhhcCCCCCchHHHHHHhHHHHHH
Q 000075 2047 ANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLL 2126 (2419)
Q Consensus 2047 a~~l~~LqP~~~PgF~FaWl~LISHR~Fmp~lL~~~~~~GW~~~~~LL~~llkFl~~~l~~~~ls~~i~~lYkgtLRilL 2126 (2419)
-++|..|||.+||||+|||++|+|||+.+|++|+.|+.+||..|..+|+++|||++ +++..++..++++|+|+||+.|
T Consensus 1647 y~~f~alqP~~fPgFtfawl~llSH~~llP~vL~v~Nd~~~d~f~~~lmsflKFlD--~s~~~v~~~~~~ly~Gflr~iL 1724 (2005)
T COG5103 1647 YSIFEALQPSRFPGFTFAWLELLSHKFLLPKVLLVNNDKINDLFSEGLMSFLKFLD--LSEEGVVLVMEALYCGFLRTIL 1724 (2005)
T ss_pred HHHHHHcCcccCCchHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcchheee
Confidence 99999999999999999999999999999999999999999999999999999998 7777888999999999999999
Q ss_pred HHHhcchhHHHHHhHhhhccCCCCccccccceecccCCCCCCCCCCCCCCCCCCCcCcCCCCccccchHHHHHHhhhhHH
Q 000075 2127 VLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRAD 2206 (2419)
Q Consensus 2127 vLlHDfPeFL~~yh~~lc~~IP~~ciQLRNiILSA~P~~mrLPDPf~p~Lkvd~LpEi~~~P~I~~d~~~~L~~~~lk~~ 2206 (2419)
|++||||.||+++||++...+|+.|+||||+||||||++|.+||||..||||.++|+|+..|.++.|+...| .++++.
T Consensus 1725 v~~hD~P~FLit~~yql~~~~P~e~vqlrNm~lSa~Psdlt~p~Pfa~~Lkv~~~P~~k~~p~~f~d~~v~l--e~~~s~ 1802 (2005)
T COG5103 1725 VYLHDFPGFLITQIYQLFRRNPLECVQLRNMMLSAYPSDLTYPCPFAQGLKVQEYPHIKNFPNQFRDRIVPL--EGQNSF 1802 (2005)
T ss_pred eeeccCchHHHHHHHHHhhcCCHHHHHHHHHHHHhccccCcCCCchhcccccccChHhhhhhHHhcccccch--hhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887 478888
Q ss_pred HHHHhccCCCCcchHHHHHHHccCCccccccCCcc---ccHhHHHHHHHHHHHHHHHhhhccCCcccccCCCCchhhhh-
Q 000075 2207 VDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTR---YNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFL- 2282 (2419)
Q Consensus 2207 vD~yL~~r~~~~~~l~~i~~~L~~~~~~~~~~G~~---yN~~liNAlVLyVG~~Ai~~~~~~~~~~~~~~~~~~~~~f~- 2282 (2419)
+| | |.+.++.+..+.+++...-+.....|.. ++-..+-++|.|+|+.++..... .|.
T Consensus 1803 ~d--L--e~~~~S~l~~~~s~~~~d~y~~k~t~~~~~~~dn~~~~~~V~h~~~es~~~~~~---------------~f~~ 1863 (2005)
T COG5103 1803 FD--L--EACLRSALQNRTSVKVTDLYIGKNTPLWVYLIDNLNEMDAVSHTVVESIKFMIE---------------RFMH 1863 (2005)
T ss_pred hh--h--HHHhhhhhhHHHHHHHHHhhccccCceeeeeeccHHHHHHHHHHHhhhHHHHHH---------------HHhc
Confidence 88 6 5666677777777766544433333322 24567889999999998653111 344
Q ss_pred hhHHHHHHHHHHhccChhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccc----chhhHHHHHHHHHHHhccCCCCC
Q 000075 2283 VSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEAN----QEIIQEQITRVLFERLIVNRPHP 2358 (2419)
Q Consensus 2283 ~s~~~~il~~L~~~ld~EgRY~ll~aiaNqLRYPN~HT~~FS~vlL~LF~~~~----~~~IqEqItRVLLERlIv~rPHP 2358 (2419)
+|+.+.++..++..++++.||+++.||++||||||+||+||||++|++|.+++ +-.||||||||||||+|||||||
T Consensus 1864 ks~~~t~l~~~~r~g~~~~rY~ll~ai~~qlRYp~ihTy~fs~vfl~~fkS~~~N~QkL~ikE~m~t~lLeRII~NrPH~ 1943 (2005)
T COG5103 1864 KSEILTMLWIRMRAGGPPKRYFLLTAILAQLRYPEIHTYDFSRVFLKSFKSHGYNPQKLLIKEQMTTVLLERIICNRPHP 1943 (2005)
T ss_pred cccHHHHHHHHHhcCCCchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 35589999999999999999999999999999999999999999999998763 45799999999999999999999
Q ss_pred hHHHHHHHHHhhCCCCcccccCcCcchHHHHHHHHHHHHhcCCCCCCC
Q 000075 2359 WGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVD 2406 (2419)
Q Consensus 2359 WGLliTFiELiKNp~Y~Fw~~~Fv~~aPEIe~lF~svarsc~~~~~~~ 2406 (2419)
|||+|||+||+||.+||||+||||+..|||.++|+++.+++|.+..+.
T Consensus 1944 WGl~i~FTeLlkNeD~Nf~k~Pyikr~~EI~~lfdsL~e~v~a~ssan 1991 (2005)
T COG5103 1944 WGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFDSLHEHVMAPSSAN 1991 (2005)
T ss_pred chhheeHHHHhcccccchhcCcccccCHHHHHHHHHHHHHhhCccccc
Confidence 999999999999999999999999999999999999999999766544
No 2
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=100.00 E-value=8.7e-289 Score=2699.00 Aligned_cols=1476 Identities=37% Similarity=0.589 Sum_probs=1162.5
Q ss_pred hhHHHHhhcCCchhHHHHHHHhhcccccCHHHHHHHHhhcCcchHHHHHHHHHHHHhhcccccccCCCCCCCcccccccc
Q 000075 532 KILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYM 611 (2419)
Q Consensus 532 k~L~~lL~~~pf~FaidLA~lAsrre~l~LekWL~~~l~~~~~~f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~ 611 (2419)
.-++-|.|+.||.++++.+.+|+.++++++..|+.+++.--.+ |..++.-... .+..++.+..+...
T Consensus 82 ~~~~~v~Nm~pn~~~~n~~~la~~~~a~~F~~~l~~~~~~~~~-----~~~~~s~~~~--------~~q~~~~~~~~~~~ 148 (1591)
T KOG1831|consen 82 PGMDIVGNMSPNLEALNIRDLASCFGAVNFSIWLLESLYLMID-----DAVPLSLIIT--------APQEPSFKPWPNER 148 (1591)
T ss_pred CcchhhhhcCcchhhhchHhhhhhcCCCCchhhhcccceeecc-----CCCcccceee--------ccccccCCCChhHH
Confidence 4578899999999999999999999999999999988653221 1222211111 01111111111100
Q ss_pred -hhHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCCCCCC-----CCCCCChhhHHHHHHHHHHHHhccCC
Q 000075 612 -EKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADS-----STSEGYADDIEAEANSYFHQMFSGQL 685 (2419)
Q Consensus 612 -etv~~lL~~L~~~~~~~~s~~l~e~l~~v~~~~i~~~PrL~n~~~~d~-----~~~~~~~~dIE~Ean~yfqkmYs~ei 685 (2419)
.++..++-.... +++ -.+..-+++.+|. .++.+|++|||+|||+||||||+ .+
T Consensus 149 ~~qi~~l~p~~~~---------------q~q-----rt~s~sa~~~~d~v~~~~~~~~~~s~die~E~~sYfqkiYn-~l 207 (1591)
T KOG1831|consen 149 FAQIYFLLPIGPS---------------QLQ-----RTESVSAPGPHDPVFFARQVSIEFSRDIEFEVNSYFQKIYN-CL 207 (1591)
T ss_pred HHHHHHHccCChh---------------hcc-----ccccccCCCCCCchhhhcccccccChhHHHHHHHHHHHHHH-Hh
Confidence 112221111100 001 1111123334443 35578999999999999999999 99
Q ss_pred CHHHHHHHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000075 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (2419)
Q Consensus 686 sI~~iV~~L~r~K~S~~~rdqdvFaCMIh~LFdEYrFf~~YP~~eL~iTAvLFGslI~~~Lv~~~~L~iALr~ILeAlrk 765 (2419)
+|+++|++|+|||.|.++|||++|+||.|+||||||||++||++||++||+||||||.|+|+++.+||+|+|+|++|+++
T Consensus 208 sI~~vI~lL~rfr~Se~~Rdq~vf~C~~~~lF~EyrFF~dYPe~~L~~Ta~lfGsiI~~~Lls~v~l~la~R~Vl~~l~~ 287 (1591)
T KOG1831|consen 208 SIFQVIDLLQRFRLSELPRDQEVFACAAHNLFEEYRFFRDYPELALATTAVLFGSIIFFVLLSFVELGLALRLVLAALGI 287 (1591)
T ss_pred hHHHHHHHHHhcccccChhhhhHHHHHHhhccccccccccCHHHHHHHHHHhcchhHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhhcCCCCCCCCCCCcccccccccccC
Q 000075 766 PADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATS 845 (2419)
Q Consensus 766 p~~SkMf~FGiqAL~qF~~RL~EwPqyC~~Llqip~L~~~~p~l~~~ie~~l~~~~~~~~~~~~~~~~~~~q~~~~q~~~ 845 (2419)
||+||||+||++||.+|+.||.+||+||.+|+.+|++...+|++|++|....- +.. . +.
T Consensus 288 P~~skl~~Fgv~Al~~frskL~~Yp~yC~~Il~~~~~s~~~~~l~~~I~~~~~---san----a---~~----------- 346 (1591)
T KOG1831|consen 288 PPSSKLFIFGVQALLPFRSKLLDYPKYCFDILSIPPFSKFRPHLYDSIWETAT---SAN----A---TT----------- 346 (1591)
T ss_pred CChhHHHHHHHHHHHHHHHHhcchHHHHHHHHhCcchhhccHHHHHHHHhhhh---hcc----C---CC-----------
Confidence 99999999999999999999999999999999999999999999999966321 110 0 00
Q ss_pred CCCCccCCcccccccchhhhHHhhhcccccccccccccccCCCCCCCccccCC-CCCcccCCCCCchhhhhcccCCCccc
Q 000075 846 GNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIG-QPSSVAPLGDTSSAQKLHNAVSAPAM 924 (2419)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~qq~~~g~l~~~~~~~~~~~~~~~p~~~~i~-~~~~~~~~~~~~~~~~~~~~p~~~~~ 924 (2419)
....|..+..+ .++.+
T Consensus 347 ------------------------------------------~~s~pv~~~~p~~~~av--------------------- 363 (1591)
T KOG1831|consen 347 ------------------------------------------RKSDPVRSASPYLDSAV--------------------- 363 (1591)
T ss_pred ------------------------------------------cccccchhccccccccc---------------------
Confidence 00001000000 00000
Q ss_pred cccCCCccCCCCCccccccccccchHHHHHHhhhcCCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhH
Q 000075 925 LSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPW 1004 (2419)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~nI~tL~~a~e~~~~~~e~P~e~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~W 1004 (2419)
+.+ .+ ..+.+.|||+|+|||+|++||+|+.|+.+|++|+|++|+++||+|
T Consensus 364 -s~~----~~-------------------------P~n~~~~~e~v~dkilF~lNNlsq~N~~qKvdevk~~ltp~y~~W 413 (1591)
T KOG1831|consen 364 -SKH----VE-------------------------PKNAEGPPEDVVDKILFPLNNLSQLNFNQKVDEVKEILTPEYYPW 413 (1591)
T ss_pred -ccc----CC-------------------------cccccCCchhhhhhheeeechHhhhhhHHHHHHHHHHcChhhHHH
Confidence 000 00 112357999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcccCCcchHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhcchhhccChHHHHHHHHhhhhhhhhhhhcCcc
Q 000075 1005 FAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQV 1084 (2419)
Q Consensus 1005 FA~YLV~kRasiEPNfH~LYl~fLd~l~~~~L~~~Vl~eTy~ni~~LL~Se~~~~ssseRslLKNLGsWLG~iTLarNkP 1084 (2419)
||+|+|+||||+|+|||+||.+|++.+++.. | -+||++|||||||||.||||||||
T Consensus 414 fs~YiV~qR~S~E~Nf~~LYskFi~ai~n~~--------t----------------~~dk~~LKNLgsWLG~iTl~rNkP 469 (1591)
T KOG1831|consen 414 FSQYIVTQRVSKEINFHELYSKFISAIKNSV--------T----------------ESDKRLLKNLGSWLGEITLGRNKP 469 (1591)
T ss_pred HHHHHhhhhhhcccchHHHHHHHHHHHhCcc--------c----------------hhHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999982 2 179999999999999999999999
Q ss_pred cccCCCChhhHHHHHHhcCceEEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcC
Q 000075 1085 LRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLG 1164 (2419)
Q Consensus 1085 I~~k~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~c~~S~vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ 1164 (2419)
|++.++|||+||+|||.+|++..|+|||||||+.|.+|+|||||||||||||++|+|+|+.||||+|||||||||||+||
T Consensus 470 I~~l~l~~kslLlEaY~sg~ll~VvPFVaKIL~~asksrIFkpPnpW~~gIlklL~ELh~e~d~klnLkFEIEVLlkslN 549 (1591)
T KOG1831|consen 470 IKELDLDFKSLLLEAYGSGRLLPVVPFVAKILEGASKSRIFKPPNPWTMGILKLLAELHQEADLKLNLKFEIEVLLKSLN 549 (1591)
T ss_pred hHHhhhhHHHHHHHHhccCceeecchHHHHHHHhhhhccccCCCCchHHHHHHHHHHhcccccceeeeeeeeeehhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccccchhhccCCCCCCCCCcCCCCCcccCCCCccccCCCCCCCCCCCcCCCCCCCCCccccccccccccc
Q 000075 1165 VDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRL 1244 (2419)
Q Consensus 1165 ld~~di~ps~~L~~r~~~~~~~~d~~~~~~~~~q~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~ 1244 (2419)
+++++++|+++++|..+. .+.. ..+.++.. +..+++..
T Consensus 550 ~~l~~le~~~~lnn~~~i-~~~L-----------~~~~~e~h-------~~~~~~~~----------------------- 587 (1591)
T KOG1831|consen 550 VILSELEPSETLNNIIRI-KKQL-----------VLMKLETH-------QSLELEDI----------------------- 587 (1591)
T ss_pred chHhhcchhhHHhhHHhH-HHHH-----------ccCChhhc-------cccccCch-----------------------
Confidence 999999999999994431 1110 00000000 00000000
Q ss_pred CcCcchhHHHHhhccCCCCCCccccccccCCCCCCCccccccc-CCCCCCceEEecccccccccchhhhhhHHHHHHHHH
Q 000075 1245 SSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAI 1323 (2419)
Q Consensus 1245 ~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~-~ip~l~~~~~i~~~l~~~~~~p~Lk~iV~~AidRAI 1323 (2419)
|...+.+ ...|++++... ...++.+++...| ||++|++|+.|++++|
T Consensus 588 -----------------------q~~~~~~--~~~fa~~~~n~~t~~~~i~~l~~~~-------~P~~Kh~~~~Aleqsv 635 (1591)
T KOG1831|consen 588 -----------------------QQVTLGN--TIAFAYDARNVSTATEVIKQLDLRP-------HPDIKHRVQEALEQSV 635 (1591)
T ss_pred -----------------------hcccccC--CccceecccccchhhhhhhhccCCC-------CccHHHHHHHHHHHHH
Confidence 0000000 11144444321 1223333444343 8999999999999999
Q ss_pred HhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHH
Q 000075 1324 KEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASE 1403 (2419)
Q Consensus 1324 rEII~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si~~~Lr~ll~~~~~~~~ 1403 (2419)
+|||.||||||+.||++||+.||+||||+|+||+|||.||+.|||+||++||++||||||+++|+++|+..+.++.....
T Consensus 636 ~eii~~Vv~rs~~IA~ttTe~lirKDFA~e~~es~l~~Aa~~M~r~la~~lAmiTcreplk~am~~nl~~~~~~~l~~~~ 715 (1591)
T KOG1831|consen 636 VEIIEPVVERSSGIASTTTESLIRKDFALERDESRLRLAASQMVRELAAGLAMITCREPLKVAMSSNLVLAALSLLSLMA 715 (1591)
T ss_pred HHHHHHHHHHhhceeehhHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876665678
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcCcccccccccCCCCCCCCCCCCC
Q 000075 1404 LLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHL 1482 (2419)
Q Consensus 1404 ~~E~~i~~~vnDNldLac~iIEKaA~EKAv~eIde~l~~~~~~RRkhre~-~g~~f~D~~~~s~~~~~LPE~LrlkpgGl 1482 (2419)
.+++++..+++||++++|++|||+|+|||+.|||.+|++++..|+.||++ ++.+|+|+....+. ..|||++|+++||+
T Consensus 716 ai~~a~~t~~~dNv~l~~~~Iek~a~eka~~dI~~~L~q~~~~Rv~~k~~~~~~~fvD~~~~~~~-~~LP~~vr~~~~~~ 794 (1591)
T KOG1831|consen 716 AIARAADTLQSDNVELVVKFIEKTAIEKATQDIDSRLEQDICGRVFHKENPEVMPFVDLLSAAYS-CTLPEVVRLKIGGL 794 (1591)
T ss_pred HHHHHHHHHHhhchhhHhhhhHHHHHHHHHHHHHHHHHHhhHhheecccCCccccchhhhhhhhh-ccCcHhhhcccCCC
Confidence 99999999999999999999999999999999999999999999999997 68999999876664 44999999999999
Q ss_pred ChhHHHHhhhhhc-CccCcC-CCCCCcccccCccCCCCchhhhhcccCCCCCCCCCCcCCCCCCCccccCCCcccCCCCc
Q 000075 1483 SVSQQRVYEDFVR-LPWQNQ-SSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTT 1560 (2419)
Q Consensus 1483 ~~~Q~~VYEdF~r-~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 1560 (2419)
+|+|++|||+|+| +|+... ++...+.. |-+-+. +..+|.....+.
T Consensus 795 ~~~l~~vYe~F~k~i~~~~~~s~~~~la~----------------~~~~~~----------------dlt~~~~~s~~~- 841 (1591)
T KOG1831|consen 795 TPQLFRVYEEFPKPIPGFLGNSSRKDLAE----------------YITESS----------------DLTQPHVISNAL- 841 (1591)
T ss_pred CHHHHHHHHHcccccccccccCCCccccc----------------ccCCCc----------------cccchhhhhHHH-
Confidence 9999999999997 543110 00000000 000000 011111000000
Q ss_pred ccccccccccccccccCCCCCcccccccccccc-cCchhhhhhcccCCCCCCCCCCCCCCCCCCCcchhcccccccCccc
Q 000075 1561 ESTSAGFLSTSLVHIGAADGGILHNSESESVNA-AFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSL 1639 (2419)
Q Consensus 1561 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l 1639 (2419)
....+++ + ++. ... .+..++.+.++.. ++++. ..++.+- .+
T Consensus 842 --------~lv~~ei-------~---~~~-~~~a~~~~i~~~~l~~~----------a~s~~---~~m~~v~----~~-- 883 (1591)
T KOG1831|consen 842 --------DLVVREI-------C---GAI-VEKACQTAIQTGMLQFK----------AQSVE---KLMEEVP----AR-- 883 (1591)
T ss_pred --------HHHHHHH-------H---HHH-HHHHHHHHHHhhhhhhh----------hhcch---hhHHhcc----ch--
Confidence 0000000 0 000 000 0000000001100 00000 0011110 00
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcCcccchhhhhhhHHHHHhccChhHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHH
Q 000075 1640 QTRDALDKYHIVAQKLDALIGNDAREAEGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIR 1719 (2419)
Q Consensus 1640 ~~~~~le~~~~~~~~l~~l~~~~~~~~~~~i~ev~~~i~~~~~rde~al~~aqki~~~L~~~~~~~l~~e~~~~~L~~L~ 1719 (2419)
+ .....++.+..++. |..+..++..+.. ..+.+...+ ..+--.+++..+|+-+|
T Consensus 884 -~-----~~~~~~~~~~~~~a---r~i~hli~~~V~~--------------~~~~l~~~~---~~~~I~~i~m~iL~~ic 937 (1591)
T KOG1831|consen 884 -N-----MVVNLVNSLLLLVA---RSIEHLISGLVSY--------------FMKNLELDF---STEKIFKIIMEILDNIC 937 (1591)
T ss_pred -h-----hhHHHHHHHHHHHH---HHHHHHHHHHHHH--------------HHHHHHHhh---cchhHHHHHHHHHHHHH
Confidence 0 00111111111110 1111111111110 011111111 11223456677888888
Q ss_pred HHhHH-HHHHhHhhhcccccccccCHHHHHHHHHhCCCChhHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCchhhH-
Q 000075 1720 DVCKL-VVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVI- 1797 (2419)
Q Consensus 1720 ~~~~~-~~kevt~wl~~~~d~rk~Nv~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~~~~~~~- 1797 (2419)
....+ ..+.|+-.+..+++++|||++.+..|++.+|++..++|.+|+++||+|.|..++.|+++|++....++.++..
T Consensus 938 ~~~qk~~~~~vs~a~s~~~~~~e~n~~~~~~L~~~~l~~~~~vd~~l~~amDs~~n~~vi~f~iell~~~~~~dnvi~~~ 1017 (1591)
T KOG1831|consen 938 RFIQKAGVRKVSEAISSSRSSLEYNIEKAEHLILSLLLDSGHVDKHLAKAMDSGGNQEVIAFLIELLRIAYGGDNVIADE 1017 (1591)
T ss_pred HhccHHHHHHHHHHHHhchHHHHhhHHHHHHHHHHhccChhhHHHHHHHHhccCCChHHHHHHHHHHHHhccCcchhhhh
Confidence 87644 4556777778999999999999999999999999999999999999999999999999999988888875433
Q ss_pred --hhHHHHHHHHHHHHcCCCCh----hHHHHHHHHHhCcccccCCCCCCccccchhhhhhcccccccCcccCccCCCCCC
Q 000075 1798 --SELHNLVDALAKLAAKPGSP----ESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPE 1871 (2419)
Q Consensus 1798 --~df~~tleaL~~l~~~~~~~----~~l~~l~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1871 (2419)
..|..|.|.+.|+.+.-.+. +...+..+..-+. -.| ++.+ ...-.
T Consensus 1018 ~~~~~~~t~E~~~ri~q~v~s~~~~~g~~~~~~~~~v~~---------------------~~k---~~s~-----~~~m~ 1068 (1591)
T KOG1831|consen 1018 WKNLFKETKEELFRILQSVESSEDKSGECASLCDYIVEH---------------------AIK---SGSS-----ADFMF 1068 (1591)
T ss_pred hhhhhhhHHHHHHHHHHHHhcccccchhhhhHHHHHHHh---------------------ccC---CCCc-----hhHHH
Confidence 45778999998865421110 1111111110000 000 0000 00011
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHcCcccCCchhHHHHHHHHHHHHHHhhhccccCCCCCC
Q 000075 1872 SVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQ 1951 (2419)
Q Consensus 1872 ~~~~dp~~~~eq~~~lF~EWv~l~~~~~~~d~~~~~Fi~qL~~~giL~~dd~~~~FfR~~~E~sV~~~~~~~~~~~g~~~ 1951 (2419)
...+|+.++.||++.+|.|||.+|+.+..++...++||+||+++|||++||..++|||.|+|+||+.++.....
T Consensus 1069 ~~~~~~~~lt~K~~~v~~~Wv~L~~~~~~~~~s~~~fi~ql~~~GVls~dd~ltqFfr~~~el~~~i~~~a~~~------ 1142 (1591)
T KOG1831|consen 1069 RRMDDKQKLTEKTEIVFLEWVILLNDSRKNDESLAAFIQQLNEIGVLSTDDLLTQFFRADLELCVVIFLEASLI------ 1142 (1591)
T ss_pred HhcCcchhhhhHHHHHHHHHHHHHhccccchHHHHHHHHHHHHcCcccchHHHHHHHHhhhhhhHHHHHHhccc------
Confidence 23467789999999999999999999999999999999999999999999999999999999999999954311
Q ss_pred CCCccccccc-hhhhHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHhhcC
Q 000075 1952 SPQQSQSLSF-LAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSS 2030 (2419)
Q Consensus 1952 ~~s~~~~~~f-~~iDA~akLi~~lvk~~~~~~~~~k~~~L~kiL~iiv~vl~~dhe~~~~~FnqRpyfRlfs~LL~el~~ 2030 (2419)
....+ .+++|+.+....+..|.. +++|.+|++||+++|++|+++||+++|+.|||+||||+|+|+|.||..
T Consensus 1143 -----~a~~~i~tv~~~~~~l~~l~~f~d---~~tk~dl~~KI~~livgv~akdHs~~~e~f~~~~y~Rlf~~ll~E~~~ 1214 (1591)
T KOG1831|consen 1143 -----TALVQICTVYAFICTLEMLDGFVD---LPTKIDLFNKILNLIVGVFAKDHSERGEYFNQCPYFRLFSMLLPELMT 1214 (1591)
T ss_pred -----ccchhhhhHHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHhcchHHhhhhHhhCcHhHHHHHHHHHhcc
Confidence 12222 578888888888888863 278999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHhhhcCCCCCCchhHHHhHHhhcccchHhhhcCCCCCChHHHHHHHHHHHHhhhhhhcCCCC
Q 000075 2031 LDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAEL 2110 (2419)
Q Consensus 2031 ~d~~l~~~~~~il~~fa~~l~~LqP~~~PgF~FaWl~LISHR~Fmp~lL~~~~~~GW~~~~~LL~~llkFl~~~l~~~~l 2110 (2419)
++.+++.+.++|+++|+++||.|||.++|||+||||+|||||+|+|++|..+++|||+.|++|+++|||||+||+|+.++
T Consensus 1215 ~~~~le~~~~~i~SaF~~tfhalqp~~~Pgf~fawL~lishr~li~~~L~~~~~k~~~~~~~llislfkfL~~ylrn~~~ 1294 (1591)
T KOG1831|consen 1215 ADSVLEPISLDILSAFKNTFHALQPRRFPGFAFAWLELISHRGLIPRMLAETNQKGWPLYAQLLISLFKFLAPYLRNYEL 1294 (1591)
T ss_pred ccchhhhHHHHHHHHHHHHHHHhCcccCcccceeeeecccchhHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHhHHHHHHHHHhcchhHHHHHhHhhhccCCCCccccccceecccCCCCCCCCCCCCCCCCCCCcCcCCCCcc
Q 000075 2111 GVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRI 2190 (2419)
Q Consensus 2111 s~~i~~lYkgtLRilLvLlHDfPeFL~~yh~~lc~~IP~~ciQLRNiILSA~P~~mrLPDPf~p~Lkvd~LpEi~~~P~I 2190 (2419)
+++++.+|||||||+|||+||||||||+|||.+||.|||+|+||||+||||||++|+|||||++|+|||+|||+..+|+|
T Consensus 1295 ~k~~~~lykgTLrVilvllhDfp~fl~~~hy~~~~~iPp~cvqlrniilsafp~~m~lpdpf~~~lkve~lpe~~~ap~i 1374 (1591)
T KOG1831|consen 1295 FKPVQLLYKGTLRVILVLLHDFPEFLCEYHYGLCDTIPPNCVQLRNIILSAFPSNMRLPDPFAVNLKVEMLPEGFYAPRI 1374 (1591)
T ss_pred hhHHHHHHHcchHHhhcccccchHHHHHhhhhccCCCCcHHHHHHHHHHHhccccCcCCCccccccchhhhhhhhcCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhhhhHHHHHHhccCCCCcchHHHHHHHccCCccccccCCccccHhHHHHHHHHHHHHHHHhhhccCCccc
Q 000075 2191 FSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQ 2270 (2419)
Q Consensus 2191 ~~d~~~~L~~~~lk~~vD~yL~~r~~~~~~l~~i~~~L~~~~~~~~~~G~~yN~~liNAlVLyVG~~Ai~~~~~~~~~~~ 2270 (2419)
+++++. +.+...|+++|.|+++|.+. +|+..++.-++... ..|++||..+|||+|+|||++||.+++.+....+
T Consensus 1375 ~~~~~~-i~~~~~~~dl~a~l~s~~~~-t~l~~~~~~~~~~~----~~~~~~~~~~~naiVlyvG~~ai~~~~~~~~~~~ 1448 (1591)
T KOG1831|consen 1375 LYSITQ-IMPSNFRKDLDARLKSSSPV-TFLSCLPQLLQVIK----EPGTRYNNQLINAIVLYVGIQAIAHLRRKSQNPS 1448 (1591)
T ss_pred cCCHHH-hcccccCCCHHHHhhccccH-hHHHHhhHHHHHhc----CccccccHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 999999 88899999999999999886 99999998877643 4799999999999999999999999988766544
Q ss_pred ccCCCCchhhhhhhHHHHHHHHHHhccChhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 000075 2271 STGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFER 2350 (2419)
Q Consensus 2271 ~~~~~~~~~~f~~s~~~~il~~L~~~ld~EgRY~ll~aiaNqLRYPN~HT~~FS~vlL~LF~~~~~~~IqEqItRVLLER 2350 (2419)
++ +++|+++|+||++|+.+||+||||++++||||||||||+|||||||++||||.+++...|||||||+++||
T Consensus 1449 ~~-------~it~s~~~~i~~nL~~nld~e~ry~~l~aianqlryp~~ht~~~s~~~l~lfk~~~~~pike~i~~~~ler 1521 (1591)
T KOG1831|consen 1449 TS-------TITHSAYMDIFQNLIVNLDTEGRYLLLNAIANQLRYPNSHTYYFSCVFLYLFKRAGNNPIKEQITRVLLER 1521 (1591)
T ss_pred cc-------ccccCchhhHHHHHHHhcchhhhHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 43 46789999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred hccCCCCChHHHHHHHHHhhCCCCcccccCcCcchHHHHHHHHHHHHhcCCCCCCCc
Q 000075 2351 LIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDD 2407 (2419)
Q Consensus 2351 lIv~rPHPWGLliTFiELiKNp~Y~Fw~~~Fv~~aPEIe~lF~svarsc~~~~~~~~ 2407 (2419)
+||||||||||+|||+||||||.||||+||||+|||||.+||++||++|+....+..
T Consensus 1522 ii~nrPHpWGllitF~eLikN~~YNfw~~~fv~~~pEI~rlfqsl~~~~~~~s~s~~ 1578 (1591)
T KOG1831|consen 1522 IIVNRPHPWGLLITFTELIKNPDYNFWDHPFVQCAPEIKRLFQSLAKYCKAYSTSEQ 1578 (1591)
T ss_pred HhcCCCCCchhHHHHHHHHcCCCcccccCcccccCHHHHHHHHHHHHHhhCcccccc
Confidence 999999999999999999999999999999999999999999999999986554444
No 3
>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [].
Probab=100.00 E-value=2.1e-114 Score=1062.86 Aligned_cols=366 Identities=59% Similarity=1.051 Sum_probs=341.5
Q ss_pred HHHHhhcCCCC--CCCcch--HHHHHHHHHHhhhcCCCCCCchhHHHhHHhhcccchHhhhc-CCCCCChHHHHHHHHHH
Q 000075 2023 NWLLDMSSLDP--VADGSN--FQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLI-GNGQKGWPYIQRLLVNL 2097 (2419)
Q Consensus 2023 ~LL~el~~~d~--~l~~~~--~~il~~fa~~l~~LqP~~~PgF~FaWl~LISHR~Fmp~lL~-~~~~~GW~~~~~LL~~l 2097 (2419)
||||||+..+. .++..+ .+++.+||++||.|||.++|||+|||++|||||+|||+||. .++++||+.|++||+++
T Consensus 1 ~ll~e~~~~~~~~~~~~~~~~~~~~~~fa~~l~~lqP~~~PgF~faWl~LisHR~Flp~lL~~~~~~~gW~~~~~Ll~~l 80 (379)
T PF04054_consen 1 SLLCELHAISIEDSLESEELDRQFLLAFASFLHSLQPLYFPGFAFAWLELISHRMFLPKLLRNSPDQKGWPAYTRLLIDL 80 (379)
T ss_pred CeeeecccCcccccchhhhhHHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Confidence 57999995332 344444 59999999999999999999999999999999999999999 88999999999999999
Q ss_pred HHhhhhhhcCCCCCchHHHHHHhHHHHHHHHHhcchhHHHHHhHhhhccCCCCccccccceecccCCCCCCCCCCCCCCC
Q 000075 2098 LQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLK 2177 (2419)
Q Consensus 2098 lkFl~~~l~~~~ls~~i~~lYkgtLRilLvLlHDfPeFL~~yh~~lc~~IP~~ciQLRNiILSA~P~~mrLPDPf~p~Lk 2177 (2419)
|+|+++|+|+.+++++++++||||||++|||+||||||||+||++||++||++|+||||+||||+|++|+|||||+||+|
T Consensus 81 l~Fl~~~l~~~~~~~~~~~lYkg~LRillvL~HDfPeFL~~~h~~lc~~iP~~ciQLrNiILsA~P~~~~lpDPf~~~lk 160 (379)
T PF04054_consen 81 LKFLGPYLKNEELSDAIKVLYKGTLRILLVLLHDFPEFLCEYHFSLCDVIPPHCIQLRNIILSAFPRNMKLPDPFTPGLK 160 (379)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhcChhHHHHHHHHHHhCCCCCCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcCCCCccccchHHHHHHhhhhHHHHHHhccCCCCcchHHHHHHHccCCcccccc----CCccccHhHHHHHHHH
Q 000075 2178 IDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAAS----AGTRYNVPLINSLVLY 2253 (2419)
Q Consensus 2178 vd~LpEi~~~P~I~~d~~~~L~~~~lk~~vD~yL~~r~~~~~~l~~i~~~L~~~~~~~~~----~G~~yN~~liNAlVLy 2253 (2419)
||++|||+++|.|++|++..|++.|||+.||+||++|+ +.+++++|+++|+.++.+... .|++||+++|||+|+|
T Consensus 161 vd~l~e~~~~P~i~~d~~~~L~~~~lk~~vd~~l~~~~-~~~~l~~i~~~l~~~~~~~~~~~g~~~~~~n~~linalVly 239 (379)
T PF04054_consen 161 VDRLPEIKQAPKILSDPTEDLQQAGLKKPVDQYLRNGP-SESLLAQILHKLQLPEPEETNGFGFDGVKYNVKLINALVLY 239 (379)
T ss_pred chhchhhccCCccccchhhhcchHHHHHHHHHHHHhCC-CHHHHHHHHHHhcCCccccccccCCCCccccHHHHHHHHHH
Confidence 99999999999999999999999999999999998744 459999999999998776542 5699999999999999
Q ss_pred HHHHHHHhhhccCCcccccCCCCchhhhhhhHHHHHHHHHHhccChhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHhh-
Q 000075 2254 VGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYA- 2332 (2419)
Q Consensus 2254 VG~~Ai~~~~~~~~~~~~~~~~~~~~~f~~s~~~~il~~L~~~ld~EgRY~ll~aiaNqLRYPN~HT~~FS~vlL~LF~- 2332 (2419)
||++|+.+.+.++..+.+.++ ++++++|++|++++|+||||++++||||||||||+|||||||+||+||+
T Consensus 240 vg~~a~~~~~~~~~~~~f~~~---------s~~~~ll~~Li~~ld~E~RY~ll~aiaNqLRYPN~HT~~Fs~~lL~lF~~ 310 (379)
T PF04054_consen 240 VGIQAVAEAQKKSSAPSFNTK---------SPHVTLLSKLIHELDPEGRYYLLSAIANQLRYPNSHTHFFSCVLLNLFSS 310 (379)
T ss_pred HhHHHHHHHhccCCCcccccc---------ChHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 999999876655544444432 6799999999999999999999999999999999999999999999999
Q ss_pred ---cccchhhHHHHHHHHHHHhccCCCCChHHHHHHHHHhhCCCCcccccCcCcchHHHHHHHHHHHHh
Q 000075 2333 ---EANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARS 2398 (2419)
Q Consensus 2333 ---~~~~~~IqEqItRVLLERlIv~rPHPWGLliTFiELiKNp~Y~Fw~~~Fv~~aPEIe~lF~svars 2398 (2419)
+.++++||||||||||||+||+|||||||+|||+||+|||+|+||++|||||+||||++|++|+||
T Consensus 311 ~~~~~~~~~IqEqItRVLLERliv~rPHPWGllitfiELikN~~y~f~~~pFik~~pEI~~~f~~~~~~ 379 (379)
T PF04054_consen 311 DMNDPNDEDIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPKYNFWELPFIKCAPEIEKLFESLARH 379 (379)
T ss_pred CCCccchhhhHHHHHHHHHHHHhcCCCCCccHHHHHHHHHhCccCCcccCcccccCHHHHHHHHHHhcC
Confidence 667899999999999999999999999999999999999999999999999999999999999986
No 4
>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. This entry represents a domain of unknown function found in the Not1 subunit of the CCR4-Not complex.
Probab=100.00 E-value=4.8e-46 Score=404.97 Aligned_cols=145 Identities=56% Similarity=0.809 Sum_probs=140.2
Q ss_pred chhhhhhHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHH
Q 000075 1308 HLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSI 1387 (2419)
Q Consensus 1308 ~p~Lk~iV~~AidRAIrEII~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si 1387 (2419)
||+||++|+.|+||||||||.|||||||+||++||++||+||||+||||+|||+|||+||++||||||+|||||||+.+|
T Consensus 1 ~p~lk~~v~~Al~rai~Eii~pvveRsv~IA~~Tt~~LV~KDFa~E~De~~~r~aa~~Mv~~LA~sLalvTcrepL~~~i 80 (147)
T PF12842_consen 1 HPQLKRIVQNALDRAIREIISPVVERSVTIASITTEELVKKDFATEPDENKMRRAAHNMVRSLAGSLALVTCREPLRESI 80 (147)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-CC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 000075 1388 SSQLRNSLQGL-TI-ASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHRE 1452 (2419)
Q Consensus 1388 ~~~Lr~ll~~~-~~-~~~~~E~~i~~~vnDNldLac~iIEKaA~EKAv~eIde~l~~~~~~RRkhre 1452 (2419)
.+|||+++++. +. .++++|++++++++||+||||++|||+|+|||++|||++|+++|+.||+|||
T Consensus 81 ~~~l~~~l~~~~~~~~~~~~e~~i~~~~~dNlel~~~~Iek~a~eka~~~id~~l~~~~~~R~~~re 147 (147)
T PF12842_consen 81 QNNLRSLLSQLNGSTEQELPEQAIQQIVNDNLELACAFIEKAAMEKAIKEIDERLEPEIELRRRHRE 147 (147)
T ss_pred HHHHHHHHHhhcCCchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999843 33 4689999999999999999999999999999999999999999999999996
No 5
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=97.16 E-value=0.27 Score=68.71 Aligned_cols=294 Identities=21% Similarity=0.248 Sum_probs=179.8
Q ss_pred HhhhcccCCcchHHHHHHHHHhCchhHHHHHHHHHHH-HHHHHhcchhhccChHHHHHHHHhhhhhhhhhhhcCcccccC
Q 000075 1010 VMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYE-NCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAR 1088 (2419)
Q Consensus 1010 V~kRasiEPNfH~LYl~fLd~l~~~~L~~~Vl~eTy~-ni~~LL~Se~~~~ssseRslLKNLGsWLG~iTLarNkPI~~k 1088 (2419)
+.|==..|++=..||+.+... .+.|-+-+...|.+ -+++..++. |-+...=+=.+..|.++-+..-
T Consensus 658 irKDFA~e~~es~l~~Aa~~M--~r~la~~lAmiTcreplk~am~~n-----------l~~~~~~~l~~~~ai~~a~~t~ 724 (1591)
T KOG1831|consen 658 IRKDFALERDESRLRLAASQM--VRELAAGLAMITCREPLKVAMSSN-----------LVLAALSLLSLMAAIARAADTL 724 (1591)
T ss_pred HHHHHhcccchhHHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHhh-----------HHHHHhhhhHHHHHHHHHHHHH
Confidence 344445788888888877644 23444555555544 233332222 1111111111577888888888
Q ss_pred CCChhhHHHHHHhcCceEEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCcc
Q 000075 1089 EIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMK 1168 (2419)
Q Consensus 1089 ~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~c~~S~vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ld~~ 1168 (2419)
--|.+.+.+.-.++-++...+-++.+-|++...-+||.+.|||.|.++-.+.+.|++- |- +-++++..
T Consensus 725 ~~dNv~l~~~~Iek~a~eka~~dI~~~L~q~~~~Rv~~k~~~~~~~fvD~~~~~~~~~-LP-----------~~vr~~~~ 792 (1591)
T KOG1831|consen 725 QSDNVELVVKFIEKTAIEKATQDIDSRLEQDICGRVFHKENPEVMPFVDLLSAAYSCT-LP-----------EVVRLKIG 792 (1591)
T ss_pred HhhchhhHhhhhHHHHHHHHHHHHHHHHHHhhHhheecccCCccccchhhhhhhhhcc-Cc-----------HhhhcccC
Confidence 8899999999999999999999999999999999999999999999999999999975 22 22233332
Q ss_pred ccccccccccchhhccCCCCCCCCCcCCCCCcccCCCCccccCCCCCCCCCCCcCCCCCCCCCcccccccccccccCcCc
Q 000075 1169 DITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGT 1248 (2419)
Q Consensus 1169 di~ps~~L~~r~~~~~~~~d~~~~~~~~~q~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~ 1248 (2419)
.+.|.-+ +-.++ |.. ..+. -. ...
T Consensus 793 ~~~~~l~-----~vYe~---F~k---------~i~~----~~------------~~s----------------------- 816 (1591)
T KOG1831|consen 793 GLTPQLF-----RVYEE---FPK---------PIPG----FL------------GNS----------------------- 816 (1591)
T ss_pred CCCHHHH-----HHHHH---ccc---------cccc----cc------------ccC-----------------------
Confidence 2222211 00000 000 0000 00 000
Q ss_pred chhHHHHhhccCCCCCCccccccccCCCCCCCcccccccCCCCCCceEEecccccccccchhhhhhHHHHHHHHHHhhhh
Q 000075 1249 LMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVS 1328 (2419)
Q Consensus 1249 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~~ip~l~~~~~i~~~l~~~~~~p~Lk~iV~~AidRAIrEII~ 1328 (2419)
..+++..++.=+..+. -...+..+.+-..+||.+
T Consensus 817 ---------------------------------------~~~~la~~~~~~~dlt-------~~~~~s~~~~lv~~ei~~ 850 (1591)
T KOG1831|consen 817 ---------------------------------------SRKDLAEYITESSDLT-------QPHVISNALDLVVREICG 850 (1591)
T ss_pred ---------------------------------------CCcccccccCCCcccc-------chhhhhHHHHHHHHHHHH
Confidence 0000000000000000 013458899999999999
Q ss_pred hcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 000075 1329 GIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQA 1408 (2419)
Q Consensus 1329 PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si~~~Lr~ll~~~~~~~~~~E~~ 1408 (2419)
-.++|+...|..+.+ +-.|-+.+++--. .-=|.+|+-+++.|+..+.. +++..-|..|.-....++. ..---+-
T Consensus 851 ~~~~~a~~~~i~~~~-l~~~a~s~~~~m~--~v~~~~~~~~~~~~~~~~~a-r~i~hli~~~V~~~~~~l~--~~~~~~~ 924 (1591)
T KOG1831|consen 851 AIVEKACQTAIQTGM-LQFKAQSVEKLME--EVPARNMVVNLVNSLLLLVA-RSIEHLISGLVSYFMKNLE--LDFSTEK 924 (1591)
T ss_pred HHHHHHHHHHHHhhh-hhhhhhcchhhHH--hccchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--Hhhcchh
Confidence 999998888877777 7777777776544 23467899999999888777 6666666555433211111 1111122
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000075 1409 VQLVTNDNLDLGCAVIEQAATDKAIQTI 1436 (2419)
Q Consensus 1409 i~~~vnDNldLac~iIEKaA~EKAv~eI 1436 (2419)
|..++-.|+|.+|.+++|++..|...-|
T Consensus 925 I~~i~m~iL~~ic~~~qk~~~~~vs~a~ 952 (1591)
T KOG1831|consen 925 IFKIIMEILDNICRFIQKAGVRKVSEAI 952 (1591)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5778889999999999999988554443
No 6
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=91.79 E-value=1.4 Score=51.06 Aligned_cols=179 Identities=21% Similarity=0.269 Sum_probs=119.6
Q ss_pred HhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHH---HHhhhcccCCcchHHHHHHHHHhCc--hhHHHHHHHHHHH
Q 000075 972 DKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQY---MVMKRASIEPNFHDLYLKFLDKVNS--KALNREIVQATYE 1046 (2419)
Q Consensus 972 DKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~Y---LV~kRasiEPNfH~LYl~fLd~l~~--~~L~~~Vl~eTy~ 1046 (2419)
.+|.-++|-+|++|++.-++|+.+..... +....+ .+++++-.+|+|-.+|..++..++. +.+-..+++.++.
T Consensus 2 ~~v~~~lnkLs~~n~~~~~~~l~~~~~~~--~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~~~~~~f~~~ll~~~~~ 79 (200)
T smart00543 2 KKVKGLINKLSPSNFESIIKELLKLNNSD--KNLRKYILELIFEKAVEEPNFIPAYARLCALLNAKNPDFGSLLLERLQE 79 (200)
T ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999888653 344444 3567899999999999999999987 5677888888887
Q ss_pred HHHHHhcchhhccChHHHHHHHHhhhhhhhhhhhcCcccccCCCChhhHHHHHHhcCce------EEEechhhhcccccC
Q 000075 1047 NCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLM------IAVIPFTSKILEPCQ 1120 (2419)
Q Consensus 1047 ni~~LL~Se~~~~ssseRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LL~eaY~~g~L------~~VIPFV~KVLe~c~ 1120 (2419)
.....+... ...++...+|+--+||.+..-+=-+.. .+.+++-+--....- ..-|=.+|.+|+.|.
T Consensus 80 ~f~~~~e~~----~~~~~~~~~~~i~fl~eL~~~~~i~~~----~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G 151 (200)
T smart00543 80 EFEKGLESE----EESDKQRRLGLVRFLGELYNFQVLTSK----IILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCG 151 (200)
T ss_pred HHHHHHHHH----HHHhhhhHHhHHHHHHHHHHcccCcHH----HHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhh
Confidence 776654432 335667778888888888765443322 122222222222111 134456778888776
Q ss_pred CCccccCCCccHHH-HHHHHHHHhcCC---cccchhHHHHHHHHh
Q 000075 1121 SSLAYQPPNPWTMA-ILGLLAEIYSMP---NLKMNLKFDIEVLFK 1161 (2419)
Q Consensus 1121 ~S~vFkPPNPWtm~-IL~lL~Ely~~~---~LKlnLKFEIEVL~K 1161 (2419)
..--+ +.+|=.|. ++..+....... ++....+|-+|-|+.
T Consensus 152 ~~l~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~r~~~~l~~l~~ 195 (200)
T smart00543 152 KDLER-EKSPKLLDEILERLQDYLLKKDKTELSSRLRFMLELLIE 195 (200)
T ss_pred HHHcC-cccHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHH
Confidence 65433 66665554 445555555555 577777888887765
No 7
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=83.06 E-value=3.6 Score=53.19 Aligned_cols=127 Identities=21% Similarity=0.274 Sum_probs=91.1
Q ss_pred HHHHHHHhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhc
Q 000075 1318 AMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQG 1397 (2419)
Q Consensus 1318 AidRAIrEII~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si~~~Lr~ll~~ 1397 (2419)
.+.-|-.. |.-.--| -||.+-+-+.|.|||-|++.. +-.|.|...+.+=+++.|---||-.||.|-+|-+=+.
T Consensus 241 glq~a~~k-I~GsnaR--CIa~L~afqevi~Dy~TP~~k----tlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~e 313 (556)
T KOG1467|consen 241 GLQYALGK-ISGSNAR--CIAMLQAFQEVIKDYTTPPEK----TLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKNE 313 (556)
T ss_pred HHHHhhcc-cCCccHH--HHHHHHHHHHHHHhccCCCcc----ccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHHH
Confidence 33333333 4444444 499999999999999999987 5677888888888887776689999999999976322
Q ss_pred ---CC---Cc---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhh
Q 000075 1398 ---LT---IA---SELLEQAVQLVTNDNLDLGCAVIEQAATDKAI-----------QTIDGEIAQQLSLRRKHR 1451 (2419)
Q Consensus 1398 ---~~---~~---~~~~E~~i~~~vnDNldLac~iIEKaA~EKAv-----------~eIde~l~~~~~~RRkhr 1451 (2419)
+. ++ ++.+-..|..-+++++.+|-..|-+.|.+|.- .-++..|..+-+.+++.|
T Consensus 314 I~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~fr 387 (556)
T KOG1467|consen 314 ISKLPISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFR 387 (556)
T ss_pred HhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceE
Confidence 22 11 45566678889999999999999999999842 234445655555444433
No 8
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=82.20 E-value=4.5 Score=46.76 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=80.4
Q ss_pred hHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHH---HHhhhcccCCcchHHHHHHHHHhCch---hHHHHHHHHHHH
Q 000075 973 KISFIINNISALNVEAKAKEFTEILKEQYYPWFAQY---MVMKRASIEPNFHDLYLKFLDKVNSK---ALNREIVQATYE 1046 (2419)
Q Consensus 973 KI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~Y---LV~kRasiEPNfH~LYl~fLd~l~~~---~L~~~Vl~eTy~ 1046 (2419)
||.-++|-+|..|++.-++++.+..... .++...+ ++.++|..+|+|..+|..++..+... .+-..+++.+.+
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~-~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~~~ 81 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSD-DPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRCQE 81 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 6778999999999999999999998776 4444444 34678999999999999999998743 456666666665
Q ss_pred HHHHHh-cchhhccChHHHHHHHHhhhhhhhhhhhc
Q 000075 1047 NCKVLL-GSELIKSSSEERSLLKNLGSWLGKLTIGR 1081 (2419)
Q Consensus 1047 ni~~LL-~Se~~~~ssseRslLKNLGsWLG~iTLar 1081 (2419)
.+.... ..+.......++...+|+.-+||.+....
T Consensus 82 ~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~ 117 (209)
T PF02854_consen 82 EFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFG 117 (209)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhc
Confidence 554411 01222345677888899999999887643
No 9
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=39.13 E-value=1.9e+02 Score=30.68 Aligned_cols=71 Identities=15% Similarity=0.322 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000075 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (2419)
Q Consensus 686 sI~~iV~~L~r~K~S~~~rdqdvFaCMIh~LFdEYrFf~~YP~~eL~iTAvLFGslI~~~Lv~~~~L~iALr~ILeAlrk 765 (2419)
..+|.+..+++++-+ ....++..-+|+..+|+ =..+-..++.|+..+++.++++...+.-|+.-+++.+.+
T Consensus 17 d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~-------~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~D 87 (113)
T PF02847_consen 17 DVDEAVECLKELKLP--SQHHEVVKVILECALEE-------KKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLESLED 87 (113)
T ss_dssp -HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTS-------SHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhh
Confidence 678888888887666 56677888888888887 355566799999999999999999999988888877654
No 10
>COG5088 SOH1 Rad5p-binding protein [General function prediction only]
Probab=36.52 E-value=77 Score=33.43 Aligned_cols=89 Identities=24% Similarity=0.339 Sum_probs=67.0
Q ss_pred ccHHHHHHHHHHHhhhcchhHhHHHHHhhhcccCCcchHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhcchhhccChHH
Q 000075 984 LNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEE 1063 (2419)
Q Consensus 984 ~Nl~~K~~Elk~~L~~~y~~WFA~YLV~kRasiEPNfH~LYl~fLd~l~~~~L~~~Vl~eTy~ni~~LL~Se~~~~ssse 1063 (2419)
+-+|-.++=+.-+-.+.|..|+++.=.-+ -+|| .-|++.++--.+|+-.++|+--|.--|-.||++......-+|
T Consensus 15 sRFE~ELEFvQ~L~Np~Yl~~Ltq~~~fe----se~F-~~YL~YlEYWr~PeYs~fivYP~CL~iL~lLn~~~~~~~vs~ 89 (114)
T COG5088 15 SRFEVELEFVQSLANPQYLTLLTQQQIFE----SENF-KNYLKYLEYWRNPEYSQFIVYPNCLFILKLLNGFMESAIVSE 89 (114)
T ss_pred chhHHHHHHHHHhcCHHHHHHHHHhhhhc----CHHH-HHHHHHHHHhhCCcccceeechhHHHHHHHhcchhHhhhhhh
Confidence 44454444444444678989888754433 2344 569999999999999999988888888889999888778889
Q ss_pred HHHHHHhh-----hhhhhh
Q 000075 1064 RSLLKNLG-----SWLGKL 1077 (2419)
Q Consensus 1064 RslLKNLG-----sWLG~i 1077 (2419)
-.++|.|| -|||+.
T Consensus 90 ~~l~~~l~e~qy~~Wlnk~ 108 (114)
T COG5088 90 DGLLEGLDELQYPQWLNKM 108 (114)
T ss_pred hHHHHhhhHHHHHHHHHHH
Confidence 99999998 488764
No 11
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=27.87 E-value=1.3e+02 Score=30.63 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHhhhhhchHHHHHHHHHHHhhccchhhHHHhhhhcccccCCCCCCCchHHHHHHH
Q 000075 7 TVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVAS 71 (2419)
Q Consensus 7 ~~~~qi~~l~~~~~~~n~~~~~~el~~~~~~g~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ll~~ 71 (2419)
+...+|+.+++.+-+++|+.++..+.+++.-|+.+.- +++.+.+.+--. +.++.+|..++..
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~-Il~~l~~~l~~~--~~~~~~k~~i~~~ 64 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELLVEGYSASD-ILKQLHEVLVES--DIPDSQKAEILKI 64 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHH-HHHHHHHHHHTS--TSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHh--hccHHHHHHHHHH
Confidence 3468899999999999999999999999966999985 888888766433 4556677665543
No 12
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=24.63 E-value=1.2e+02 Score=38.91 Aligned_cols=61 Identities=25% Similarity=0.461 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHhhhhhhcCCCCCchHHHHHHhHHHHHHHHH------------hcchhHHHHHhHhhhccCCCCccc
Q 000075 2086 GWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLL------------HDFPEFLCDYHFTFCDVIPPSCIQ 2153 (2419)
Q Consensus 2086 GW~~~~~LL~~llkFl~~~l~~~~ls~~i~~lYkgtLRilLvLl------------HDfPeFL~~yh~~lc~~IP~~ciQ 2153 (2419)
-|..+..+|-+++++.+||-- ..++|+||..+-... +|||+||-. -+-++.-
T Consensus 127 ~l~~v~~~l~~~lr~fGpF~s--------~~IikSTLdFv~g~~iEq~nf~~~p~A~~fP~ylR~-----ksGl~E~--- 190 (357)
T cd00686 127 WWALVNEHFPNVLRHFGPFCS--------LNLIRSTLDFFEGCWIEQYNFGGFPGSHDYPQFLRR-----MNGLGHC--- 190 (357)
T ss_pred HHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHhhhccCCCCCCcccchHHHh-----ccCCcce---
Confidence 377777788888888888854 668888888865442 478888743 3334332
Q ss_pred cccceecccCCC
Q 000075 2154 MRNIILSAFPRN 2165 (2419)
Q Consensus 2154 LRNiILSA~P~~ 2165 (2419)
.-.+.||+.
T Consensus 191 ---yA~FiFPk~ 199 (357)
T cd00686 191 ---VGASLWPKE 199 (357)
T ss_pred ---eEEEecchh
Confidence 356778875
No 13
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.64 E-value=4.1e+02 Score=28.29 Aligned_cols=71 Identities=13% Similarity=0.279 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000075 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (2419)
Q Consensus 686 sI~~iV~~L~r~K~S~~~rdqdvFaCMIh~LFdEYrFf~~YP~~eL~iTAvLFGslI~~~Lv~~~~L~iALr~ILeAlrk 765 (2419)
..+|.+..+++++-+ ....++....|+--+||- .++-..++.|+..+.+.++++...+.-|+.-+++.+.+
T Consensus 17 D~~ea~~~l~~L~~~--~~~~~vv~~~i~~~le~~-------~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~d 87 (113)
T smart00544 17 DTDEAVHCLLELKLP--EQHHEVVKVLLTCALEEK-------RTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIED 87 (113)
T ss_pred CHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCC-------ccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChh
Confidence 678888888888766 478889999999989982 34566699999999999999999999999999888876
Done!