Query 000075
Match_columns 2419
No_of_seqs 206 out of 288
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 13:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gmj_A CCR4-NOT transcription 100.0 8.1E-81 2.8E-85 707.8 19.9 218 966-1183 3-222 (229)
2 4b89_A General negative regula 100.0 6.6E-81 2.3E-85 711.0 15.5 220 960-1181 24-243 (249)
3 4b8b_A General negative regula 100.0 4.1E-78 1.4E-82 751.8 35.7 484 314-819 89-597 (603)
4 3rk6_A Polyadenylate-binding p 71.8 8 0.00028 45.3 8.5 187 967-1161 16-232 (234)
5 2vso_E Eukaryotic initiation f 66.5 13 0.00045 44.6 9.1 192 965-1161 31-275 (284)
6 1hu3_A EIF4GII; heat repeat, t 58.1 12 0.00041 44.4 6.5 187 968-1161 9-235 (260)
7 1h2v_C 80 kDa nuclear CAP bind 30.2 1.2E+02 0.004 41.5 9.9 224 2089-2371 352-631 (771)
8 2rg8_A Programmed cell death p 25.7 2.7E+02 0.0093 30.7 10.2 89 666-765 6-94 (165)
9 2ion_A PDCD4, programmed cell 19.6 3.7E+02 0.013 29.3 9.6 90 667-765 6-95 (152)
10 1x5b_A Signal transducing adap 19.4 4.9E+02 0.017 28.5 10.6 94 2299-2398 47-146 (163)
No 1
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=100.00 E-value=8.1e-81 Score=707.83 Aligned_cols=218 Identities=48% Similarity=0.855 Sum_probs=214.8
Q ss_pred CChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHHhhhcccCCcchHHHHHHHHHhCchhHHHHHHHHHH
Q 000075 966 PASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATY 1045 (2419)
Q Consensus 966 P~e~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~YLV~kRasiEPNfH~LYl~fLd~l~~~~L~~~Vl~eTy 1045 (2419)
++|+|+|||+|||||+|++|+++|++|+|++|+++|++|||+|||+||||+|||||+||++|+++++++.|+++|+++||
T Consensus 3 ~de~v~dki~Fi~NNls~~N~~~k~~elk~~l~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~~l~~~vl~~T~ 82 (229)
T 4gmj_A 3 LEENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETY 82 (229)
T ss_dssp SCHHHHHHHHHHHHSCCSSTHHHHHHHHHHHSCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHhhhhheeehhcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchhhccChHHHHHHHHhhhhhhhhhhhcCcccccCCCChhhHHHHHHhcCc--eEEEechhhhcccccCCCc
Q 000075 1046 ENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSL 1123 (2419)
Q Consensus 1046 ~ni~~LL~Se~~~~ssseRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LL~eaY~~g~--L~~VIPFV~KVLe~c~~S~ 1123 (2419)
++|++||++++++++++||++|||||+|||+|||||||||+||+||+|+||+|||++|. |++|||||||||++|++|+
T Consensus 83 ~~i~~LL~s~~~~~~~~eR~~LKNLG~WLG~lTLarnkPI~~~~l~~K~LL~eay~~g~~rL~~viPFVcKvLe~~~~S~ 162 (229)
T 4gmj_A 83 RNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSV 162 (229)
T ss_dssp HHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCCCTTTCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCT
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHccCCCchhcccCHHHHHHHHHHCCCceEEEeehhHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999995 9999999999999999999
Q ss_pred cccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCccccccccccccchhhc
Q 000075 1124 AYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREI 1183 (2419)
Q Consensus 1124 vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ld~~di~ps~~L~~r~~~~ 1183 (2419)
|||||||||||||++|+|||++||||+|||||||||||+|++|++||+|+++|++|++..
T Consensus 163 iFkPPNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~l~~~~~~i~ps~~l~~~~~~~ 222 (229)
T 4gmj_A 163 VFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLK 222 (229)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCCGGGSCCCSGGGCSTTGG
T ss_pred cCCCCChhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHcCCChhhcCchhhhhccchhc
Confidence 999999999999999999999999999999999999999999999999999999998753
No 2
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=100.00 E-value=6.6e-81 Score=711.00 Aligned_cols=220 Identities=34% Similarity=0.658 Sum_probs=211.5
Q ss_pred CCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHHhhhcccCCcchHHHHHHHHHhCchhHHHH
Q 000075 960 ETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNRE 1039 (2419)
Q Consensus 960 ~~~~e~P~e~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~YLV~kRasiEPNfH~LYl~fLd~l~~~~L~~~ 1039 (2419)
...+++|||+|+|||+|||||+|++|+++|++|+|++|+++||+|||+|||++|||+|||||+||++|+++++++.|+++
T Consensus 24 ~~~~e~P~~~v~dki~Fi~NNls~~Nl~~k~~el~~~l~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~~~L~~~ 103 (249)
T 4b89_A 24 QINQEGAPKDVVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSGLLHQF 103 (249)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHCCTTTHHHHHHHHHHHCCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHH
T ss_pred CccCCCcCHHHHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCCHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhccChHHHHHHHHhhhhhhhhhhhcCcccccCCCChhhHHHHHHhcCceEEEechhhhccccc
Q 000075 1040 IVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPC 1119 (2419)
Q Consensus 1040 Vl~eTy~ni~~LL~Se~~~~ssseRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~c 1119 (2419)
|+++||++|++||+++++ +++||++|||||+|||+|||||||||+||+||+|+||+|||++|+|.+|||||||||++|
T Consensus 104 vl~~T~~~i~~LL~~~~i--~~~eRs~LKNLG~WLG~iTLarNkPI~~~~ld~K~LL~eay~~g~L~~vIPFVcKvLe~~ 181 (249)
T 4b89_A 104 MVNVTLRQLFVLLSTKDE--QAIDKKHLKNLASWLGCITLALNKPIKHKNIAFREMLIEAYKENRLEIVVPFVTKILQRA 181 (249)
T ss_dssp HHHHHHHHHHHHHTBSCG--GGSCHHHHHHHHHHHHHHTGGGTCCCCTTTBCHHHHHHHHHHHTCHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhhccc--ChHHHHHHHHHHHHHhHHHHhcCCCchhcccCHHHHHHHHHHcCCeEEEeeHHHHHHHhc
Confidence 999999999999999876 478999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCccccccccccccchh
Q 000075 1120 QSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1181 (2419)
Q Consensus 1120 ~~S~vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ld~~di~ps~~L~~r~~ 1181 (2419)
++|+||||||||||+||++|+|||++|+||+|||||||||||+|++|++||+||++|+++++
T Consensus 182 k~SkiFkPPNPWt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~l~l~l~~i~ps~~l~~~~~ 243 (249)
T 4b89_A 182 SESKIFKPPNPWTVGILKLLIELNEKANWKLSLTFEVEVLLKSFNLTTKSLKPSNFINTPEV 243 (249)
T ss_dssp TTCSSSSTTCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCGGGSCCCCCC-----
T ss_pred ccCCccCCCCchHHHHHHHHHHHHhCcchhHhHHHHHHHHHHHcCCChHhCCcccccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999988765
No 3
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.1e-78 Score=751.78 Aligned_cols=484 Identities=21% Similarity=0.325 Sum_probs=376.4
Q ss_pred HHHHHHHhhCC-CCCHHHHHHhc-----CCCCCCCCChhhHHHHHHHHhhhcCCCccccccccCccc-CchhhHHHHHHH
Q 000075 314 VLVKAIKQLAP-NTNWIRVVENL-----DYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWK-NTEGQLSFLRYA 386 (2419)
Q Consensus 314 vlv~alk~~~p-~lnW~~Vi~~l-----D~~~f~i~d~~~l~ll~~~~~~~~~~~Fpi~~l~~~~W~-N~~~Qlsfl~~~ 386 (2419)
-+-.+++.+.. ++||.+|+..+ |. .-.-|+..++.-+++++..+ =+|+.++...|. .=.-.|.++=|-
T Consensus 89 q~~~~~~~~~~~~inW~~vFnlms~~~f~~-~~~~pt~asls~~~~~L~~~----~liD~F~~~dw~~~f~~~l~~~L~~ 163 (603)
T 4b8b_A 89 VIARSISSLQANQINWNRVFNLMSTKYFLS-APLMPTTASLSCLFAALHDG----PVIDEFFSCDWKVIFKLDLAIQLHK 163 (603)
T ss_dssp HHHHHHHTSCGGGSCHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHCSH----HHHHHHHHSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccccCHHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHcCCC----chHHHHHcCcchHhHhHHHHHHHHh
Confidence 34466777755 89999999775 33 22446667787788887743 456666655664 344455555555
Q ss_pred hhCCCcccccCcCc-cccccccCCCCccccccccccccchHHHHHHHHH---hhhcCchHHHHHHhhhhhhcChhHHHHH
Q 000075 387 VASPPEVFTFAHSA-RQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQ---LSEMGHASFARSMLEYPLKQCPEMLLLG 462 (2419)
Q Consensus 387 l~~p~~~f~f~~~~-~~~v~~d~~~~~~~~~~~~~~~W~sldL~e~L~~---Lae~~~~~~v~~l~e~p~~~~pe~lllg 462 (2419)
.+..-.-||+..++ -+.++- ..++.+... -.--.=.+||+ +.+.. ++++..-....+.|+.-.+..||.+.++
T Consensus 164 ~~~~qg~~dl~~~~~~~~~~~-~~p~~~~~l-l~~~si~~l~l-~~~~~~~~~~~~~~~~~~~~~f~~d~~~~Peylal~ 240 (603)
T 4b8b_A 164 WSVQNGCFDLLNAEGTRKVSE-TIPNTKQSL-LYLLSIASLNL-ELFLQREELSDGPMLAYFQECFFEDFNYAPEYLILA 240 (603)
T ss_dssp CCTTTTCCCGGGCTTCCBSCS-SSCCCSCCG-GGBHHHHHHHH-HHHHTTTTSCCCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cCccCCchhhhcCCCceeccc-CCCCcccce-eeeeehhhhhH-HHHHHHHHhccchhHHHHHHHHhhhhccCHHHHHHH
Confidence 54323346666665 344442 222221000 00011123333 22222 2222223456789999999999999777
Q ss_pred hhccCcch------hHHHHHHHHhhhHHHHcCCCch-HHHHHHHhhCChhHHHHHHHhhhcCCccHHHHHHHHHHhhhHH
Q 000075 463 MAHINTAY------NLIQYEVSFAVFPMIIKSTMSN-GMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILS 535 (2419)
Q Consensus 463 l~~i~~~~------~~l~~ell~~lf~~fl~~~~~~-~vi~~lW~~~~~~~~~~l~d~y~~d~~~l~rIldvaqelk~L~ 535 (2419)
+..-.+.| ..+.+|++-.||-..+.+.+.+ .-+.+.+. ++.-++......+++|+.+++|++|||+|+|||+
T Consensus 241 ~~~~~k~~~~~~en~~~i~~l~~~l~~~~~~~~~~~l~~~i~~~~-~~~k~~~~~~~Ii~kD~~~l~rildi~~elk~L~ 319 (603)
T 4b8b_A 241 LVKEMKRFVLLIENRTVIDEILITLLIQVHNKSPSSFKDVISTIT-DDSKIVDAAKIIINSDDAPIANFLKSLLDTGRLD 319 (603)
T ss_dssp HHHTHHHHHHHHCCHHHHHHHHHHHHHHHHHSCGGGHHHHHHHCC-CHHHHHHHHHHHHHHSCSCCSHHHHHHHHTTCHH
T ss_pred HHhhccccccccccchHHHHHHHHHHHHHHhcChHHHHHHHHHcc-ChhHHHHHHHHHHhcCchhHHHHHHHHHHhChHH
Confidence 76544444 4566788888887766544333 22333344 4455558888889999999999999999999999
Q ss_pred HHhhcCCchhHHHHHHHhhcccccCHHHHHHHHhhcCcchHHHHHHHHHHHHhhcccccccCCCCCCCcccccccchhHH
Q 000075 536 SVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIP 615 (2419)
Q Consensus 536 ~lL~~~pf~FaidLA~lAsrre~l~LekWL~~~l~~~~~~f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~etv~ 615 (2419)
.||+..||+||+|+|++|+||||+|||+|++++++.+|.+ +|++||+.|+..+. +..+++ +..+|.++|++
T Consensus 320 ~lL~~~p~~faldLAalAs~rg~lnLe~WL~~~l~~~~~~---~lL~FL~~K~~~e~----~~~~~~--~~~~L~i~tv~ 390 (603)
T 4b8b_A 320 TVINKLPFNEAFKILPCARQIGWEGFDTFLKTKVSPSNVD---VVLESLEVQTKMTD----TNTPFR--SLKTFDLFAFH 390 (603)
T ss_dssp HHHHHSCTTHHHHTHHHHHHHTCCCHHHHHHHHCCTTTHH---HHHHHHHHHHHCCC----C--CSC--TTTSCCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHhhcCch---HHHHHHHHHhhccc----cCCCCC--CCceecHHHHH
Confidence 9999999999999999999999999999999999999976 99999999997651 111122 33558889999
Q ss_pred HHHHHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCC-CCCC-----CCCCCChhhHHHHHHHHHHHHhccCCCHHH
Q 000075 616 VILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGE-AADS-----STSEGYADDIEAEANSYFHQMFSGQLTIEA 689 (2419)
Q Consensus 616 ~lL~~L~~~~~~~~s~~l~e~l~~v~~~~i~~~PrL~n~~-~~d~-----~~~~~~~~dIE~Ean~yfqkmYs~eisI~~ 689 (2419)
+||++|++. .++++..|+++++|+.|+++||||+|++ |+|+ +.++.|++|||+|||+||||||++++||++
T Consensus 391 ~lLk~L~~~---~l~~e~~e~l~~vq~~~lq~yPRLiN~G~G~D~~i~an~~~~~~~~dIE~ean~yfqkmY~~eisI~~ 467 (603)
T 4b8b_A 391 SLIEVLNKC---PLDVLQLQRFESLEFSLLIAFPRLINFGFGHDEAILANGDIAGINNDIEKEMQNYLQKMYSGELAIKD 467 (603)
T ss_dssp HHHHHHHTS---CCCHHHHHHHHHHHHHHHHHCGGGTTTTSSCHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHhc---CCChHHHHHHHHHHHHHHHhCchhhcCCCcchhhhhccCCCCCCCHHHHHHHHHHHHHHHcCCCCHHH
Confidence 999999864 4578889999999999999999999986 4554 456789999999999999999999999999
Q ss_pred HHHHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCCCCC
Q 000075 690 MVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADS 769 (2419)
Q Consensus 690 iV~~L~r~K~S~~~rdqdvFaCMIh~LFdEYrFf~~YP~~eL~iTAvLFGslI~~~Lv~~~~L~iALr~ILeAlrkp~~S 769 (2419)
+|++|+|||+|+++||||||+||||+||||||||++||++||++||+|||+||+|+||++.+|++||||||||+|+|++|
T Consensus 468 iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~Ll~~~~L~iALr~ILeAlrkp~~s 547 (603)
T 4b8b_A 468 VIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRGFVLDVAFRIIMRFAKEPPES 547 (603)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTSCTTS
T ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHhhhhhhHHHHHHh-cccccccccHHHHHHHHHHHHh
Q 000075 770 KMFVFGTKALEQFVDRLIEWPQYCNHIL-QISHLRSTHAELVAFIERALAR 819 (2419)
Q Consensus 770 kMf~FGiqAL~qF~~RL~EwPqyC~~Ll-qip~L~~~~p~l~~~ie~~l~~ 819 (2419)
|||+||++||+||++||+||||||++|+ +|||| +++|+||++|+++...
T Consensus 548 kmf~FGi~ALeqF~~RL~ewPqyc~~lL~~ip~l-q~~P~l~q~i~~~a~~ 597 (603)
T 4b8b_A 548 KMFKFAVQAIYAFRIRLAEYPQYCKDLLRDVPAL-KSQAQVYQSIVEAATL 597 (603)
T ss_dssp HHHHHHHHHHHHTGGGGGGCHHHHHHHHHHCGGG-GGCHHHHHHHHHTTC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc-ccChHHHHHHHHHHcC
Confidence 9999999999999999999999997766 79999 5889999999887653
No 4
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=71.77 E-value=8 Score=45.28 Aligned_cols=187 Identities=16% Similarity=0.213 Sum_probs=111.7
Q ss_pred ChhhhHhHhhhhhcCC--cccHHHHHHHHHHHhh-----hcchhHhHHHHHhhhcccCCcchHHHHHHHHHhCch-----
Q 000075 967 ASEVQDKISFIINNIS--ALNVEAKAKEFTEILK-----EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSK----- 1034 (2419)
Q Consensus 967 ~e~vqDKI~FIiNNlS--~~Nl~~K~~Elk~~L~-----~~y~~WFA~YLV~kRasiEPNfH~LYl~fLd~l~~~----- 1034 (2419)
++.+..||.-|+|-|| ++|++.-++++.+.+. ++...-+..- |.+.|-.||||-.+|.++...+..+
T Consensus 16 ~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~l-IfekAi~ep~fs~~YA~LC~~l~~~l~~~~ 94 (234)
T 3rk6_A 16 GSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVEL-IYQQATSIPNFSYMGARLCNYLSHHLTISP 94 (234)
T ss_dssp --CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHH-HHHHHHSSTTCHHHHHHHHHHHHHHCCCCC
T ss_pred hHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHHHHhCcccHHHHHHHHHHHHHhcCCCC
Confidence 5789999999999999 9999999999888753 2344455554 4455889999999999999988652
Q ss_pred h---HHHHHHH---HHHHHHHHHhcchhhccChHHHHHHHHhhhhhhhhhhhcC------cccccCCC---ChhhHHHHH
Q 000075 1035 A---LNREIVQ---ATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN------QVLRAREI---DPKSLIIEA 1099 (2419)
Q Consensus 1035 ~---L~~~Vl~---eTy~ni~~LL~Se~~~~ssseRslLKNLGsWLG~iTLarN------kPI~~k~l---d~K~LL~ea 1099 (2419)
. +.+..|+ +-|++-.....+ +...|...-+.--++|-+-.-.+ +++ +-.| .+++||-.-
T Consensus 95 ~~~~Fr~lLL~rcQ~eFe~~~~~~~~-----d~~~k~r~lg~i~FIgELf~~l~~~~~~~~~l-~e~I~~~ci~~Ll~~l 168 (234)
T 3rk6_A 95 QSGNFRQLLLQRCRTEYEVKDQAAKG-----DEVTRKRFHAFVLFLGELYLNLEIKGTNGQVT-RADILQVGLRELLNAL 168 (234)
T ss_dssp TTCCHHHHHHHHHHHHHTTHHHHTSS-----CHHHHHHHHHHHHHHHHHHHHCCEECTTSSEE-CCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhhHHhhhc-----cHHHHHHHHHHHHHHHHHHhhhcccccccchh-HHHHHHHHHHHHHHhc
Confidence 1 3344442 334433322222 21223322233336777765422 333 2222 356665432
Q ss_pred HhcCceEEEechhhhcccccCCCcc---ccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHh
Q 000075 1100 YEKGLMIAVIPFTSKILEPCQSSLA---YQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFK 1161 (2419)
Q Consensus 1100 Y~~g~L~~VIPFV~KVLe~c~~S~v---FkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K 1161 (2419)
.++ .-.--|-.+|++|..|...-= +.--.++.-.++.-|.++.+.+++--.++|=|+.|+.
T Consensus 169 ~~~-p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~dlie 232 (234)
T 3rk6_A 169 FSN-PMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVE 232 (234)
T ss_dssp HHS-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred cCC-CChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 221 111223344555543321100 0011268888999999999989999999999998864
No 5
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=66.49 E-value=13 Score=44.59 Aligned_cols=192 Identities=13% Similarity=0.141 Sum_probs=110.4
Q ss_pred CCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhc-------chhHhHHHHHhhhcccCCcchHHHHHHHHHhCch---
Q 000075 965 APASEVQDKISFIINNISALNVEAKAKEFTEILKEQ-------YYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSK--- 1034 (2419)
Q Consensus 965 ~P~e~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~-------y~~WFA~YLV~kRasiEPNfH~LYl~fLd~l~~~--- 1034 (2419)
...+++.-||.-|+|-||++|++.=+.++.++-... -..=+. -+|.+.|-.||+|=.+|.+|+..|...
T Consensus 31 ~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi-~~If~kA~~ep~fs~~YA~Lc~~l~~~l~~ 109 (284)
T 2vso_E 31 LDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVI-EQIFLKACDEPHWSSMYAQLCGKVVKELNP 109 (284)
T ss_dssp CCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHH-HHHHHHHHHCGGGHHHHHHHHHHHHHHSCT
T ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHH-HHHHHHHHcCcchHHHHHHHHHHHHHhcCc
Confidence 456889999999999999999999999998775321 111133 256778999999999999999887532
Q ss_pred -------------hHH-HHHHHHHHHHHHHHhcchhhcc-------------C-----hHHHHHHHHhhhhhhhhhhhcC
Q 000075 1035 -------------ALN-REIVQATYENCKVLLGSELIKS-------------S-----SEERSLLKNLGSWLGKLTIGRN 1082 (2419)
Q Consensus 1035 -------------~L~-~~Vl~eTy~ni~~LL~Se~~~~-------------s-----sseRslLKNLGsWLG~iTLarN 1082 (2419)
.++ +.+|+..-..-..... ++... . ...|..--|+-.++|-+-.-+=
T Consensus 110 ~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~-~~~~~~~~~~~~e~e~~~~e~~~~~~~k~r~lg~i~FIgeLyk~~~ 188 (284)
T 2vso_E 110 DITDETNEGKTGPKLVLHYLVARCHAEFDKGWT-DKLPTNEDGTPLEPEMMSEEYYAAASAKRRGLGLVRFIGFLYRLNL 188 (284)
T ss_dssp TCCBCC---CCTHHHHHHHHHHHHHHHHHHCCC-SSCC------------CCTTHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHhhhhh-hhhhhccccchhhhhhhhhHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 122 2333222111111111 11000 0 0111222233456665543211
Q ss_pred cc--cccCCCChhhHHHHHHhcCceEEEechhhhcccccCCCccccCC---------CccHHHHHHHHHHHhcCCcccch
Q 000075 1083 QV--LRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPP---------NPWTMAILGLLAEIYSMPNLKMN 1151 (2419)
Q Consensus 1083 kP--I~~k~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~c~~S~vFkPP---------NPWtm~IL~lL~Ely~~~~LKln 1151 (2419)
-+ |.| -.++.|| +.+....=.--|=.+|++|..|...-=-.+| -+..-.++..|.++-+.+++---
T Consensus 189 l~~~i~~--~ci~~LL-~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~~l~~l~~~~~ls~R 265 (284)
T 2vso_E 189 LTGKMMF--ECFRRLM-KDLTDSPSEETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQTAKISSR 265 (284)
T ss_dssp SCHHHHH--HHHHHHH-HHHHSCCCHHHHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred CcHHHHH--HHHHHHh-ccCCCCCCHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCHH
Confidence 11 111 1244444 3322111122355678888776554222222 24788899999999888888888
Q ss_pred hHHHHHHHHh
Q 000075 1152 LKFDIEVLFK 1161 (2419)
Q Consensus 1152 LKFEIEVL~K 1161 (2419)
++|=||.++.
T Consensus 266 irFml~dlid 275 (284)
T 2vso_E 266 IKFKLIDIKE 275 (284)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 6
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=58.06 E-value=12 Score=44.40 Aligned_cols=187 Identities=14% Similarity=0.149 Sum_probs=107.6
Q ss_pred hhhhHhHhhhhhcCCcccHHHHHHHHHHHhh--hcchhHhHHHHHhhhcccCCcchHHHHHHHHHhCc---hh-------
Q 000075 968 SEVQDKISFIINNISALNVEAKAKEFTEILK--EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNS---KA------- 1035 (2419)
Q Consensus 968 e~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~--~~y~~WFA~YLV~kRasiEPNfH~LYl~fLd~l~~---~~------- 1035 (2419)
+.+..+|.-++|-||++|++.=+.++.++-- ++-..=+ --+|.++|-.||+|=.+|.+|+..|.. |.
T Consensus 9 ~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~v-i~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~~~~~ 87 (260)
T 1hu3_A 9 QELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGV-IDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNT 87 (260)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHH-HHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC--------
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcccCCccc
Confidence 6788999999999999999998888765311 1111112 236888999999999999999999975 11
Q ss_pred --HHHHHHH---HHHHHHHHHhc--chhhc-----cChHHH---------------HHHHHhhhhhhhhhhhcCcccccC
Q 000075 1036 --LNREIVQ---ATYENCKVLLG--SELIK-----SSSEER---------------SLLKNLGSWLGKLTIGRNQVLRAR 1088 (2419)
Q Consensus 1036 --L~~~Vl~---eTy~ni~~LL~--Se~~~-----~ssseR---------------slLKNLGsWLG~iTLarNkPI~~k 1088 (2419)
+-+.+|+ +.|++...-.. .++.+ ..+.|| ..--|+-.++|-+-.-+=-+-+.=
T Consensus 88 ~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~~i~ 167 (260)
T 1hu3_A 88 VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIM 167 (260)
T ss_dssp -CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCHHHH
T ss_pred hHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCHHHH
Confidence 2333332 23333211000 00000 112222 222356667777664321111100
Q ss_pred CCChhhHHHHHHhcCceEEEechhhhcccccCCCccccC-CCccHHHHHHHHHHHhcCCcccchhHHHHHHHHh
Q 000075 1089 EIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQP-PNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFK 1161 (2419)
Q Consensus 1089 ~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~c~~S~vFkP-PNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K 1161 (2419)
.-.++.|| +.... --|=.+|++|..|...- .++ +.+..-.++.-|.++-+.+++---.+|=||.++.
T Consensus 168 ~~~l~~Ll-~~~~e----~~iE~l~~lL~tvG~~L-~~~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~d 235 (260)
T 1hu3_A 168 HDCVVKLL-KNHDE----ESLECLCRLLTTIGKDL-DFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVID 235 (260)
T ss_dssp HHHHHHHH-HSCSH----HHHHHHHHHHHHHHHHH-CCTTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCH----HHHHHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 11233333 21111 13556788888876553 333 3367888899999988888888889999999875
No 7
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=30.22 E-value=1.2e+02 Score=41.52 Aligned_cols=224 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCCchHHHHHH--------hHHHHHHHHHhcchhH-------------------------
Q 000075 2089 YIQRLLVNLLQFLEPFLRNAELGVPVRFLYK--------GTLRVLLVLLHDFPEF------------------------- 2135 (2419)
Q Consensus 2089 ~~~~LL~~llkFl~~~l~~~~ls~~i~~lYk--------gtLRilLvLlHDfPeF------------------------- 2135 (2419)
.|+.|++.|.| +.|-.=..-+..+++.+|+ -.-|+.--..|=+--|
T Consensus 352 yY~sll~eLCk-l~P~~~~~v~~~ai~~lY~~i~~md~e~~~Rf~dwFShhLSNF~f~W~W~eW~~~~e~~~~~p~r~Fi 430 (771)
T 1h2v_C 352 MYTTLLIELCK-LQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFV 430 (771)
T ss_dssp HHHHHHHHHHH-HSTTTHHHHHHHHHHHHHHTGGGBCHHHHHHHHHHHHHHHTTTTTCCCGGGGGGGTTSCTTSHHHHHH
T ss_pred HHHHHHHHHHH-hChHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhcCCcCccHHHhHHhhcCCccCcHHHHH
Q ss_pred ---------HHHHhHhhhccCCCCccccccceecccCCCCCCCCCCCCCCCCCCCcCcCCCCccccchHHHHHHhhhhHH
Q 000075 2136 ---------LCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRAD 2206 (2419)
Q Consensus 2136 ---------L~~yh~~lc~~IP~~ciQLRNiILSA~P~~mrLPDPf~p~Lkvd~LpEi~~~P~I~~d~~~~L~~~~lk~~ 2206 (2419)
| .||-.+-+.+|+.+.+| +|.+..|+.|.+ -++-...|- ..+-..
T Consensus 431 k~ll~k~~RL-Sy~~rIk~~lP~~~~~l-------------lp~~p~p~f~y~-~e~~~~~p~-----------~~~a~~ 484 (771)
T 1h2v_C 431 REVLEKCMRL-SYHQRILDIVPPTFSAL-------------CPSNPTCIYKYG-DESSNSLPG-----------HSVALC 484 (771)
T ss_dssp HHHHHHHHHT-SCHHHHHTTSCGGGGGG-------------SCCCCCCCCTTS-TTSCTTSTT-----------HHHHHH
T ss_pred HHHHHHHHhh-hhHHHHHHhCcHHHHhh-------------CCCCCCCCceeC-CccccCCcc-----------hHHHHH
Q ss_pred HHHHhccCCCCcchHHHHHHHccCCccccccC-CccccHhHHHHHHHHHHHHHHHhhhccCCcccccCCCCchhhhhhhH
Q 000075 2207 VDDYLKTGQPGSSFLSELKQKLLLPPSEAASA-GTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSA 2285 (2419)
Q Consensus 2207 vD~yL~~r~~~~~~l~~i~~~L~~~~~~~~~~-G~~yN~~liNAlVLyVG~~Ai~~~~~~~~~~~~~~~~~~~~~f~~s~ 2285 (2419)
+-++++.+.+...+...|++ +..+..+.... +..+|.-.++.+| +++-.+.+|+-+-.++.. +-
T Consensus 485 l~~~ir~k~~~eei~~~l~~-i~~~~~~~~~~~~~~~~~~~i~v~~-----q~ll~~GskS~SH~~~~l---------er 549 (771)
T 1h2v_C 485 LAVAFKSKATNDEIFSILKD-VPNPNQDDDDDEGFSFNPLKIEVFV-----QTLLHLAAKSFSHSFSAL---------AK 549 (771)
T ss_dssp HHHHHHTTCCHHHHHHHGGG-CC-------------CCHHHHHHHH-----HHHHHHSTTCHHHHHHHH---------HH
T ss_pred HHHHHHccCCHHHHHHHHHh-chhcccccccccccccchHHHHHHH-----HHHHHhccchHHHHHHHH---------HH
Q ss_pred HHHHHHHHHhccChhhHHHHHHHHHhhhcCCCchhHHHHH-------------HHHHHhhcccchhhHHHHHHHHHHHhc
Q 000075 2286 ALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSF-------------VLLYLYAEANQEIIQEQITRVLFERLI 2352 (2419)
Q Consensus 2286 ~~~il~~L~~~ld~EgRY~ll~aiaNqLRYPN~HT~~FS~-------------vlL~LF~~~~~~~IqEqItRVLLERlI 2352 (2419)
+.+.|..|+. +.|+|..+|.++.+--+. |.+.-+=.. ++-++|++......
T Consensus 550 y~~~lk~l~~--~~~~q~~il~~v~~~W~~-~~q~~~ividkll~~~iv~p~~Vv~w~f~~~~~~~~------------- 613 (771)
T 1h2v_C 550 FHEVFKTLAE--SDEGKLHVLRVMFEVWRN-HPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDF------------- 613 (771)
T ss_dssp THHHHHHHTS--SHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTSSCHHHHHHHHTSGGGTTTT-------------
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHHHhc-CCceEehHHHHHHhcCCCCHHHHHHHHcCchhhhHH-------------
Q ss_pred cCCCCChHHHHHHHHHhhC
Q 000075 2353 VNRPHPWGLLITFIELIKN 2371 (2419)
Q Consensus 2353 v~rPHPWGLliTFiELiKN 2371 (2419)
.++|.|-++-.-++-+++
T Consensus 614 -~~~~~weil~~ti~kv~~ 631 (771)
T 1h2v_C 614 -TRLFVWEILHSTIRKMNK 631 (771)
T ss_dssp -TSHHHHHHHHHHHHHHHH
T ss_pred -hhhhHHHHHHHHHHHHHH
No 8
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=25.65 E-value=2.7e+02 Score=30.67 Aligned_cols=89 Identities=10% Similarity=0.183 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhh
Q 000075 666 ADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQ 745 (2419)
Q Consensus 666 ~~dIE~Ean~yfqkmYs~eisI~~iV~~L~r~K~S~~~rdqdvFaCMIh~LFdEYrFf~~YP~~eL~iTAvLFGslI~~~ 745 (2419)
.+++++++++..+..|+.. .++|.+.-++.++... .-..+....|..-||. + ++|=..+++|+-.|.. +
T Consensus 6 ~ee~~kk~~~ii~EYf~~~-D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldr-----k--~~ere~~s~LL~~L~~-~ 74 (165)
T 2rg8_A 6 ERAFEKTLTPIIQEYFEHG-DTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEG-----K--ASHREMTSKLLSDLCG-T 74 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTS-----C--HHHHHHHHHHHHHHBT-T
T ss_pred HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcC-----C--HHHHHHHHHHHHHHHH-C
Confidence 4688889998888888864 6899999999988432 4445556666655663 2 4555569999999965 9
Q ss_pred ccchhHHHHHHHHHHHHhcC
Q 000075 746 LVTHLTLGIALRGVLDALRK 765 (2419)
Q Consensus 746 Lv~~~~L~iALr~ILeAlrk 765 (2419)
+++.-.+.-|+..+++.+-+
T Consensus 75 ~ls~~~i~~Gf~~lle~ldD 94 (165)
T 2rg8_A 75 VMSTTDVEKSFDKLLKDLPE 94 (165)
T ss_dssp TBCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhChh
Confidence 99999999999999988764
No 9
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=19.64 E-value=3.7e+02 Score=29.26 Aligned_cols=90 Identities=12% Similarity=0.160 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhc
Q 000075 667 DDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQL 746 (2419)
Q Consensus 667 ~dIE~Ean~yfqkmYs~eisI~~iV~~L~r~K~S~~~rdqdvFaCMIh~LFdEYrFf~~YP~~eL~iTAvLFGslI~~~L 746 (2419)
+++++++++..+-.|+.. .++|.+.-++.++.. ..-.++-...|..-+|.- .+++-..++.|+-.+.+.++
T Consensus 6 eel~kki~~lL~EY~~~~-D~~EA~~cl~EL~~p--~f~~e~V~~~i~~alE~~------~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 6 NHLVKEIDMLLKEYLLSG-DISEAEHCLKELEVP--HFHHELVYEAIVMVLEST------GESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp CHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCC------SSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHCCC
Confidence 578889998888888864 689999999999753 333455444444445521 34666779999999999999
Q ss_pred cchhHHHHHHHHHHHHhcC
Q 000075 747 VTHLTLGIALRGVLDALRK 765 (2419)
Q Consensus 747 v~~~~L~iALr~ILeAlrk 765 (2419)
|+.-.+.-|+.-|++.+-+
T Consensus 77 is~~q~~~Gf~~vl~~ldD 95 (152)
T 2ion_A 77 ITIDQMKRGYERIYNEIPD 95 (152)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhChH
Confidence 9999999999999988754
No 10
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=19.43 E-value=4.9e+02 Score=28.55 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhcccchhhHHHH-HHHHHH---HhccCCCCChHHHHHHHHHhhCCCC
Q 000075 2299 TEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQI-TRVLFE---RLIVNRPHPWGLLITFIELIKNPRY 2374 (2419)
Q Consensus 2299 ~EgRY~ll~aiaNqLRYPN~HT~~FS~vlL~LF~~~~~~~IqEqI-tRVLLE---RlIv~rPHPWGLliTFiELiKNp~Y 2374 (2419)
++|--..+.||...|.|+|.|+-+++-.||......-...++.+| .|-.++ |++..++|| -+---.+|||+.
T Consensus 47 ~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~-~Vk~kil~li~~--- 122 (163)
T 1x5b_A 47 PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHP-KVCEKLKSLMVE--- 122 (163)
T ss_dssp SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCH-HHHHHHHHHHHH---
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCH-HHHHHHHHHHHH---
Confidence 456667778999999999999999999999888764334444333 344443 445555776 455556677764
Q ss_pred cccccCcCcc--hHHHHHHHHHHHHh
Q 000075 2375 NFWNQSFIRC--APEIEKLFESVARS 2398 (2419)
Q Consensus 2375 ~Fw~~~Fv~~--aPEIe~lF~svars 2398 (2419)
|...|-+. -+.|..+++.+-+.
T Consensus 123 --W~~~f~~~~~l~~i~~~Y~~Lk~~ 146 (163)
T 1x5b_A 123 --WSEEFQKDPQFSLISATIKSMKEE 146 (163)
T ss_dssp --HHHHTTTCSTTHHHHHHHHHHHTT
T ss_pred --HHHHhcCCcccHHHHHHHHHHHHc
Confidence 77777653 24578888888776
Done!