Query 000076
Match_columns 2415
No_of_seqs 205 out of 286
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 16:53:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5103 CDC39 Cell division co 100.0 4E-294 1E-298 2678.3 108.6 1918 6-2402 25-1991(2005)
2 KOG1831 Negative regulator of 100.0 2E-290 4E-295 2713.9 93.1 1483 532-2403 82-1578(1591)
3 PF04054 Not1: CCR4-Not comple 100.0 3E-115 6E-120 1070.8 30.8 366 2019-2394 1-379 (379)
4 PF12842 DUF3819: Domain of un 100.0 3.8E-46 8.2E-51 405.7 17.6 145 1308-1452 1-147 (147)
5 smart00543 MIF4G Middle domain 91.9 1.2 2.6E-05 51.5 11.6 179 972-1161 2-195 (200)
6 KOG1831 Negative regulator of 91.0 0.53 1.2E-05 65.9 8.3 123 1662-1795 919-1041(1591)
7 KOG1467 Translation initiation 81.6 4.3 9.4E-05 52.5 8.4 127 1318-1451 241-387 (556)
8 PF02854 MIF4G: MIF4G domain; 81.4 4.5 9.7E-05 46.8 8.1 108 973-1081 3-117 (209)
9 PF02847 MA3: MA3 domain; Int 42.1 1.7E+02 0.0036 31.1 9.8 85 671-765 3-87 (113)
10 COG5088 SOH1 Rad5p-binding pro 38.0 68 0.0015 33.8 5.5 89 984-1077 15-108 (114)
11 PF08542 Rep_fac_C: Replicatio 27.8 1.3E+02 0.0029 30.6 6.0 62 7-71 3-64 (89)
12 cd00686 Terpene_cyclase_cis_tr 25.5 1.1E+02 0.0024 39.1 5.7 73 2070-2161 113-199 (357)
No 1
>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
Probab=100.00 E-value=4.4e-294 Score=2678.33 Aligned_cols=1918 Identities=27% Similarity=0.406 Sum_probs=1485.4
Q ss_pred CCcHHHHHHHHHhhhhhchHHHHHHHHHHHh-hccchhhHHHHhhhccc--ccCCCCCCCch---HHHHHHHHHHHhhcC
Q 000076 6 STVPSQIRFLLQSLNEANADSVFRELCQFIE-YGIEGSTMMLQTCMDHL--NLHGTGLKNPQ---LESVVASVFKYIMDK 79 (2415)
Q Consensus 6 ~~~~~qi~~l~~~~~~~n~~~~~~el~~~~~-~g~~~~~~~l~~~~~~~--~~~~~~~k~~~---~~~ll~~~~~~ll~k 79 (2415)
+.+-+||.+|++.|++.||++.-+||.|+++ ..++--+|++|.++-.- +.-+ .+|... --.+|-+|++.++.|
T Consensus 25 sIV~AQI~fLlsTL~eDqydt~~eqIRqlinkna~~vY~~~~rRLiq~nS~~If~-tGK~~~~~a~~~~LL~Elks~~~K 103 (2005)
T COG5103 25 SIVKAQILFLLSTLREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQGNSYRIFG-TGKSSDGLATYKLLLDELKSLTKK 103 (2005)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHccCCcHHHHHHHHHHhcccchhhhc-cCcccchhHHHHHHHHHHHhhhhh
Confidence 4677999999999999999999999999997 89999999999999533 3222 244333 457888999999987
Q ss_pred CCccchhhhhccCcccCHHHHHHHHhhcCCCchhHHHHhhhhccCCChHHHHHHHHHHHHHHHHHhcC----CCC--CCC
Q 000076 80 PNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCAN----PVP--MNS 153 (2415)
Q Consensus 80 p~f~t~~c~A~~~~~~~~~~l~~l~~~L~ls~~q~v~~~laL~~s~n~~~~~~~~~f~~~~i~~l~~~----~~~--~~s 153 (2415)
-. ..|+.+.. ++-|+++ ++ |..+||.++ .++...-.+. | |++ +..
T Consensus 104 r~-----sD~Is~~d--sevFed~----~F----Q~siGlT~S-------------Ll~n~Fqs~~-Nq~~~~t~qqS~d 154 (2005)
T COG5103 104 RF-----SDAISGSD--SEVFEDF----HF----QFSIGLTTS-------------LLKNTFQSLL-NQLSDPTQQQSID 154 (2005)
T ss_pred hh-----hhHhhcch--hhhhcch----hh----hhhhhhhHH-------------HHHHHHHHHH-hhccchHhhhhcc
Confidence 54 66776641 2223333 11 111444444 2222222222 1 111 110
Q ss_pred HHHHHHHHHHHhhcCchhH-hHHHHHHHHHhhcCCCCCCccccCCcCCcccccccccccccccCCCCcchHHHHHHhhcc
Q 000076 154 AEQIQNIIMFLQRSSDLSK-HVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKE 232 (2415)
Q Consensus 154 ~~~lh~il~~l~~~~gl~~-~~~~f~~~l~~~~~~~~~~~~l~Pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (2415)
-+-+ -.|++ |-.. ...-|.+.+.-.--+ +.++.. +.+.++.+- +.
T Consensus 155 ~NDl----d~lr~--~~Tdydr~~f~q~i~~~Le~-------------------s~~~~~-~~~p~e~~~-~~------- 200 (2005)
T COG5103 155 KNDL----DLLRE--GTTDYDRKIFRQEIKDVLEK-------------------SDPLTA-LFGPREVDR-SF------- 200 (2005)
T ss_pred cchH----HHHhc--CCchHHHHHHHHHhHHHHHc-------------------CCchhh-hcCcchhhH-HH-------
Confidence 0000 00111 2110 001122211111000 001000 000011000 01
Q ss_pred CcHHHHHHhhCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccCCccCccchhhHhhhccCCCCCCCCCCCCCCH
Q 000076 233 MSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNV 312 (2415)
Q Consensus 233 ~sl~~~i~elG~~~t~s~~~c~~~L~~~~~l~~~~va~vlg~ma~t~sgl~d~~~~~~~~~~~~~~~~~~~~~~~~~Wn~ 312 (2415)
|++. ..++|+-.+.-++.|||+.+-.|+.- ++.+.||.
T Consensus 201 --l~~~--------------l~~Il~P~~~~~~~dvar~il~~~~~--------------------------~D~~~w~~ 238 (2005)
T COG5103 201 --LDDA--------------LQRILRPRREVVPEDVARAILFMADF--------------------------PDRGEWNL 238 (2005)
T ss_pred --HHHH--------------HHHHhCCCccCCcchHHHHHhhhhhc--------------------------ccccccch
Confidence 1111 23445534457888999985444422 22567999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHhcCCCCCCCCChhhHHHHHHHHhh-hcCCCccccccccCcccCchh-hHHHHHHHhhCC
Q 000076 313 DVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKY-ACQEPFPLHAVCGSVWKNTEG-QLSFLRYAVASP 390 (2415)
Q Consensus 313 ~vlv~alk~~~p~lnW~~Vi~~lD~~~f~i~d~~~l~ll~~~~~~-~~~~~Fpi~~l~~~~W~N~~~-Qlsfl~~~l~~p 390 (2415)
-..+.+++..+..+||.+|..+||.+.|.|+.......++.+|-. +.+.+||.+.+|. .|||... |+++.-|..+.+
T Consensus 239 v~~~~a~~s~~e~iNW~~v~s~f~~~~F~i~~l~p~~v~~~c~f~~~~~~~v~~eff~~-~Wkn~~~~~l~i~lhi~s~~ 317 (2005)
T COG5103 239 VAIVGAMKSNLEEINWRDVYSCFLDVNFSIWTLEPLYVIIDCWFYISGIITVPYEFFFK-RWKNERAQILFIRLHIESDE 317 (2005)
T ss_pred HHHHHHHHhhhhhcCHHHHHHHhcCcceeeccCcchHHHHHHHHHHhcCCCccHHHHHH-HhcchhhhhHhhheeeeecc
Confidence 999999999999999999999999999999977766666665555 4567899999995 9999999 555556666776
Q ss_pred CcccccCc-CccccccccCCCCccccc-cccccccchHHHHHHHHHhhhcCchHHHHHHhhhhhhcChhHHHHHhhcc--
Q 000076 391 PEVFTFAH-SARQLPYVDAVPGLKLQS-GQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHI-- 466 (2415)
Q Consensus 391 ~~~f~f~~-~~~~~v~~d~~~~~~~~~-~~~~~~W~sldL~e~L~~Lae~~~~~~v~~l~e~p~~~~pe~lllgl~~i-- 466 (2415)
...|+... .+.+.|..+...+.+... -...+++||.+|++++. +++.....-..++| +...||++.+||..+
T Consensus 318 ~~~fd~~Nv~~tr~Vs~~~~~~~~~~ny~~~~snlNc~el~Q~~~-l~~~p~i~y~~~lF---lN~~pE~~~a~L~~~~~ 393 (2005)
T COG5103 318 KRTFDYSNVFFTRIVSIEDSRGHRFKNYMGYESNLNCVELFQCIM-LGSLPLIEYIARLF---LNKSPEWCAAGLGFVQP 393 (2005)
T ss_pred cchheecccceeEEEeeecCchHHHHHHHHHhcccCHHHHHHHHH-hccchHHHHHHHHH---hccCHHHHHHHHHHhhh
Confidence 77788754 345555554433332222 24779999999999994 44332222233466 788999999999754
Q ss_pred ---CcchhHHHHHHHHhhhHHHHcC-CCchHHHHHHHhhCchhHHHHHHHhhhcCCccHHHHHHHHHHhhhHHHHhhcCC
Q 000076 467 ---NTAYNLIQYEVSFAVFPMIIKS-TMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIP 542 (2415)
Q Consensus 467 ---~~~~~~l~~ell~~lfp~fl~~-~~~~~vi~~lW~~~~~~v~~~l~d~y~~d~~~l~rIldvaqelk~L~~ll~~~p 542 (2415)
+-.||+.+.+.+...+-+++.| .++++|+..+...+|+++++...-...+|...++|++|+.-|+|.|+.+.|..|
T Consensus 394 ~f~~L~~N~v~~s~if~~ll~~f~n~~p~sFvfv~~~rT~p~~~~~~~r~v~~kd~~pv~~~l~~~le~~~l~~V~n~lP 473 (2005)
T COG5103 394 KFSPLAWNPVQESRIFEELLMGFANGAPNSFVFVVLFRTHPEMMLQKSRLVLAKDGIPVSRLLDIFLEHKMLPLVSNLLP 473 (2005)
T ss_pred hhhhhhcCchHHHHHHHHHHHHHhcCCCCceEEEEEEecCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCchhhhhhcCC
Confidence 4479999998888877777755 588999999999999999999987789999999999999999999999999999
Q ss_pred chhHHHHHHHhhcccccCHHHHHHHHhhcCcc-h----HHHHHHHHHHHHhhcccccccCCCCCCCcccccccchhHHHH
Q 000076 543 SPFAIRLAVIASQKELVDLEKWLSINLSTYKD-V----FFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVI 617 (2415)
Q Consensus 543 ~~f~idLa~lAsrre~l~lekWl~~~l~~~~~-~----f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~etv~~l 617 (2415)
..|++|+++|++.|+.++|..|+..++....+ + |+...++||+.|+.......+.+ ..+-+ ++..|+-.+
T Consensus 474 ~~f~~~i~vL~~aR~~l~~~~Wl~~~~~~~~dad~~NVfvv~~~~~l~sk~s~~k~p~~q~---ee~~~--f~~~tviei 548 (2005)
T COG5103 474 PEFCFDIIVLSSARDHLNLGIWLSNNLTTRKDADGLNVFVVSLVQYLDSKVSKHKEPEKQK---EESVM--FPLNTVIEI 548 (2005)
T ss_pred HHHHHHHHHHHHHHHhcchhhhcccCceeeecCCcccchHHHHHHHHHHHHhhcCChhhhc---cccee--eehhhHHHH
Confidence 99999999999999999999999999987665 3 99999999999997543211110 11222 344565555
Q ss_pred HHHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCCC-CCC-----CCCCCCchhHHHHHHHHHHHHhccCCCHHHHH
Q 000076 618 LKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEA-ADS-----STSEGYADDIEAEANSYFHQMFSGQLTIEAMV 691 (2415)
Q Consensus 618 L~~L~~~~~~~~s~~~~e~l~~v~~~~i~~~PrL~n~~~-~d~-----~~~~~~~~diE~ean~yfqkmY~~eisI~~iV 691 (2415)
|..+..... .-.+.++.++..|++.||||++.+- +|+ .+.++++.|||+||.+|+|+||+++++|+++|
T Consensus 549 l~t~~~~V~-----q~~~~~k~~~~~~l~~fprli~~G~~~Ds~v~at~tt~s~~~dIE~E~~sy~q~~y~~~~~I~~~I 623 (2005)
T COG5103 549 LGTFTKAVE-----QYIRILKPETVVVLNEFPRLIPHGLRRDSIVAATNTTRSKEIDIEEEASSYIQQIYNSQRGIESSI 623 (2005)
T ss_pred HHHhHHHHH-----HHHHhcCcceEehHhhhhhhccCCCCcchhhhccCcccccCccHHHHHHHHHHHHHHhcccHHHHH
Confidence 555433222 1156778888899999999999874 454 35678999999999999999999999999999
Q ss_pred HHHHHhhcCCCccchhhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCCCCCcc
Q 000076 692 QMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKM 771 (2415)
Q Consensus 692 ~~L~r~K~S~~~rdqdvFaCMih~LFdEYrFF~~YP~~eL~~TAvLFGslI~~~Lv~~~~L~iALr~ILeAlrkp~~SkM 771 (2415)
+.||+|++|++|||+|+|+|+.|.|||||+||++||.++|++|||||||||+++|+++.+|++|+|||..++++|++|||
T Consensus 624 ~~l~~f~~senprd~elfsci~hal~~ey~ff~dyPl~ALaltavLfGslI~f~ll~~~~L~vA~ryI~~~lk~P~~skm 703 (2005)
T COG5103 624 NQLKEFLRSENPRDKELFSCIFHALLEEYGFFYDYPLSALALTAVLFGSLIKFRLLPKPYLRVAIRYIKGSLKHPENSKM 703 (2005)
T ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhccCCCCCCCCCCCcccccccccccCCCCCcc
Q 000076 772 FVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVS 851 (2415)
Q Consensus 772 f~FGiqAL~qF~~RL~EwPqyC~~Llqip~L~~~~p~l~~~ie~~l~~~~~~~~~~~~~~~~~~~q~~~~q~~~~~~~~~ 851 (2415)
|+||+|||++|+.||++||+||+.++.||.|+. .|++|+.|-.+.. ..+. .+
T Consensus 704 f~Fg~qal~~Fq~kLp~Yp~yc~~vl~ip~l~~-r~~iy~sivem~s----~eNt-------~~---------------- 755 (2005)
T COG5103 704 FSFGFQALEVFQEKLPSYPSYCSEVLEIPTLNN-RILIYKSIVEMDS----NENT-------EV---------------- 755 (2005)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhccccccc-chHHHHHHHHHHh----ccCC-------cc----------------
Confidence 999999999999999999999999999999965 8999998855443 1100 00
Q ss_pred CCcccccccchhhhHHhhhhccccccccccccccccCCCCCccccCCCCCcccCCCCCchhhhhcccCCCccccccCCCc
Q 000076 852 GSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGF 931 (2415)
Q Consensus 852 ~~~~~~~~~~~~~~~~~qq~~~~~l~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 931 (2415)
|+ +++++|. ++.. .|
T Consensus 756 --------------------------Ek-------a~p~~pm---~pl~-----------------------------~f 770 (2005)
T COG5103 756 --------------------------EK-------ANPTHPM---LPLE-----------------------------DF 770 (2005)
T ss_pred --------------------------cc-------cCCCCcc---cchh-----------------------------hh
Confidence 00 0111111 1000 00
Q ss_pred cCCCCCccccccccccchHHHHHHhhhcCCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHHh
Q 000076 932 ARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVM 1011 (2415)
Q Consensus 932 ~~p~~~~~~~~~~~~~ni~tL~~a~e~~~~~~e~Ppe~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~YLV~ 1011 (2415)
++- .-+-+...|.-++||..+|+|.+||++..|+..|++|+|+.|+|.|.+||+.|||.
T Consensus 771 v~~---------------------~v~c~~n~Eg~~~evV~~iLFaiNNl~~ln~n~ki~~lk~~Ltp~y~~wfs~y~vt 829 (2005)
T COG5103 771 VRL---------------------IVKCDANNEGRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVGWFSIYMVT 829 (2005)
T ss_pred hee---------------------EeccccCccccHHHHHHHHHHHhhhHHhhhccchHHHHHHhcCcccccceeeEEEE
Confidence 000 00001224555678888899999999999999999999999999999999999999
Q ss_pred hhcccCCcchHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcccccCCCC
Q 000076 1012 KRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREID 1091 (2415)
Q Consensus 1012 kRasiEPN~H~LYl~fl~~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~ld 1091 (2415)
+|++.|||||+||.++++.++++.||+.+.+.|.+.++.||+...- +++|+++|||||+|||+|||||||||+|+++|
T Consensus 830 qR~~~e~n~~~ly~kvve~lgS~dly~~~~r~TL~~l~~ll~~~~e--s~~ekk~lKnLgswLG~ItLa~NkpIt~~q~~ 907 (2005)
T COG5103 830 QRSTAEENCRRLYGKVVERLGSKDLYLRFSRKTLEFLKMLLDYRCE--SPSEKKVLKNLGSWLGRITLAKNKPITSEQFD 907 (2005)
T ss_pred eeccccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhcccc--ChHHHHHHHHHHHHHhHHHHhhcCcccccccc
Confidence 9999999999999999999999999999999999999999997644 88999999999999999999999999999999
Q ss_pred hhhHHHHHHhcCceEEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCccccc
Q 000076 1092 PKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIT 1171 (2415)
Q Consensus 1092 ~K~LL~eaY~~g~L~~VIPFV~KVLe~~~~S~vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ld~~die 1171 (2415)
||++|+|||+.||+..|||||||||++++.|+||||||||+||||+||.|||+++++||+||||||+|+||||++++.||
T Consensus 908 Fk~~lve~~~~~Ri~~vvpFV~k~L~~as~s~IFkPpNPW~mgILkLL~El~~~a~~~l~lkFEie~Ll~~lnv~~~~ik 987 (2005)
T COG5103 908 FKKFLVESVECRRILFVVPFVSKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLLRHLNVELVPIK 987 (2005)
T ss_pred HHHHHHHHhhcCceEEeehHHHHHHHhcccceEecCCCchHHHHHHHHHHHHhcCcceeehhhhHHHHHHhcceeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhh---ccCCCCCCCCCcCCCCCcccCCCCcCccCCCCCCCCCCCcCCCCCCCCCcccccccccccccCcCc
Q 000076 1172 PTSLLKDRKRE---IEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGT 1248 (2415)
Q Consensus 1172 ps~~L~~r~~~---~~~~~d~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 1248 (2415)
|++.++++... ++. .+||. -++ +++|.++ ..++||..
T Consensus 988 Ps~~~~n~~V~ks~LEk---------------e~~Ed------vL~-a~~~d~~----------~~~~qyi~-------- 1027 (2005)
T COG5103 988 PSKSLGNHLVLKSRLEK---------------ELPED------VLN-AKFPDGT----------DYLAQYII-------- 1027 (2005)
T ss_pred hhhhhCcHHHHHHHHhh---------------hchHH------HHh-hhccccc----------hHHHHHHH--------
Confidence 99999876531 110 11110 000 0111000 02233321
Q ss_pred chhHHHHhhccCCCCCCccccccccCCCCCCCcccccccCCCCCCceEEecccccccccchhhhhhHHHHHHHHHHhhhh
Q 000076 1249 LMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVS 1328 (2415)
Q Consensus 1249 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~~ip~l~~~~~in~~l~~~~~~p~Lk~iv~~Ai~rAIrEII~ 1328 (2415)
++. +..+..|..+ .+...| -|.+|++.++|++.+||||++
T Consensus 1028 --~~s------------------------Sq~TvtD~va-------~~~g~P-------~PaiK~~~Qlal~~SVrEI~~ 1067 (2005)
T COG5103 1028 --EDS------------------------SQITVTDLVA-------RHVGSP-------KPAIKNLTQLALDLSVREICG 1067 (2005)
T ss_pred --Hhh------------------------hcchHHHHHH-------HHcCCC-------ChHHHHHHHHHHHHHHHHHHH
Confidence 000 0011111000 001111 289999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 000076 1329 GIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQA 1408 (2415)
Q Consensus 1329 PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTCkEPLr~si~~~Lr~ll~~~~~~~~~~E~~ 1408 (2415)
.|||||+.||++||..|++||||||.|+.++..||++||++|||+||+|||+|||++.|.++.|++..++.+....+.++
T Consensus 1068 aVVeks~gIAi~Tt~~l~~KDFa~ev~~s~l~~aar~Mv~~La~~La~vT~~EPlk~~i~~n~rs~a~~l~sv~~~~ae~ 1147 (2005)
T COG5103 1068 AVVEKSCGIAIQTTMALFKKDFAMEVEKSMLYVAARNMVVNLAKFLALVTAQEPLKACISGNVRSYAMKLCSVLDFSAEK 1147 (2005)
T ss_pred HHHHHhccchhhHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhccHHHHHHHHhhhhhchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877667778889
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCCCcCcccccccccCCCCCCCCCCCCCChhHh
Q 000076 1409 VQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQ 1487 (2415)
Q Consensus 1409 i~~~vnDNldLac~iIEKaA~EkAv~eIde~l~~~~~~RR~hre~-~g~~f~D~~~~~~~~~~LPe~LrlkpgGl~~~Q~ 1487 (2415)
+..++++|++.||.+||||+++|+.++|+..|+.++..|||||++ ++.||+||++ +..+++||++|+++-||+||+|+
T Consensus 1148 vd~~~~eN~~va~~lIe~a~~~k~~~~i~aei~h~Iv~R~~Hrktt~n~PFvd~aa-a~~slnLps~L~ls~~~~Tpqqf 1226 (2005)
T COG5103 1148 VDKIAMENQDVACRLIERAGVSKVSESISAEIEHMIVERVRHRKTTPNLPFVDPAA-ANLSLNLPSSLELSIGKATPQQF 1226 (2005)
T ss_pred HHHHHHhchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCccCccc-CccccCCCcccccccCCcCHHHh
Confidence 999999999999999999999999999999999999999999998 7899999996 55578999999999999999999
Q ss_pred HhhhhhhcCcCCcCCCCCCCccccCccCCCCchhhhhcccCCCCCCCCCCcCCCCCCCcccccCCccccCCCcccCcccc
Q 000076 1488 RVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGF 1567 (2415)
Q Consensus 1488 ~VYEdF~r~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 1567 (2415)
++||||.|+|-..- .+|.+.++.-+ ....+++ ++++ -|.++. +.++.
T Consensus 1227 ~lyE~fD~l~ls~i---~~h~~~~~~n~----------~~Td~ad---------stda-----l~~nl~------nt~e~ 1273 (2005)
T COG5103 1227 SLYEDFDRLSLSTI---MGHIEKIAINA----------IDTDSAD---------STDA-----LNNNLN------NTVEN 1273 (2005)
T ss_pred hhhhcccccccccc---ccccchhhhhh----------hcCChhh---------hhhh-----hccccc------hhhhh
Confidence 99999999763221 12221111100 0000000 0000 000000 00000
Q ss_pred cccccc-cccCCCCCcccccccccccccCChhhhhhhccCCCCCCCCCCCCCCCCCCCchhhhccccccccccchhhhHH
Q 000076 1568 LSTSLV-HIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALD 1646 (2415)
Q Consensus 1568 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~le 1646 (2415)
-..|++ ++.. +... . +.+..++ ..++|.. .+..+. . +
T Consensus 1274 eAnQta~~yq~------------n~L~-i-~~ql~Ql--------------~~~~Py~-~~~~V~---------a----D 1311 (2005)
T COG5103 1274 EANQTALEYQE------------NLLI-I-KAQLVQL--------------SKKIPYS-SKKNVI---------A----D 1311 (2005)
T ss_pred HHHHHHHHHHH------------Hhhh-h-hhHHHHh--------------cccCCcc-hhhcCc---------c----h
Confidence 000000 0000 0000 0 0000000 0011110 011111 0 0
Q ss_pred HHHHHHHHHHHHhhcCccchhHHHHhhhhHHHHHhhcChhHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHhHH
Q 000076 1647 KYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKL 1726 (2415)
Q Consensus 1647 ~~~~~~~~l~~l~~~~~~~~~i~~~i~~v~~~i~~~~~rde~al~~aqkv~~~L~~~~~~~l~~e~~~~~L~~L~~~~~~ 1726 (2415)
..|- .+.+. . +++..++.+|...|.++ |+.++.++|.+++.|+..+.+++++||+.++||+||+++-+
T Consensus 1312 ~e~~---~lkE~-----~-NQ~~t~~~~Il~~Ia~s---d~~~l~c~q~c~~il~~~skSp~~~evls~~lEkic~~S~k 1379 (2005)
T COG5103 1312 EEHG---LLKEG-----K-NQFETVFRRILESIASS---DDKDLECIQLCRYILGHLSKSPSKEEVLSRCLEKICKISFK 1379 (2005)
T ss_pred hhhh---HHHhh-----H-HHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHhHhHH
Confidence 0010 11111 1 35667777777777654 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccCHHHHHHHHhhCCCChhhhHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCChhh-HHHHHHH
Q 000076 1727 VVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVV-ISELHNL 1805 (2415)
Q Consensus 1727 ~~kevt~wl~~~~d~rk~N~~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~~~~~~-~~~~~~~ 1805 (2415)
++|+|.||++|+.|.||||+|+|.+||+++||+..|||.+|++.|.+.. ..++|||+.|++..+..|.++. +.||.+|
T Consensus 1380 t~k~V~~wl~ysnD~rKfnip~I~slie~nli~~~E~D~~l~r~i~~~~-gnvtdFai~Ll~~~V~~e~pi~~~~dFI~t 1458 (2005)
T COG5103 1380 TQKEVLGWLIYSNDPRKFNIPLIGSLIEHNLINVVEYDQALSRKIPLAD-GNVTDFAIALLASLVTAEVPICTVYDFICT 1458 (2005)
T ss_pred HhhhhheeeeecCChhhcCcHHHHHHHHhccchhhhHHHHHHhhccccc-cchHHHHHHHHHHHhccCCceeeHHHHHHH
Confidence 9999999999999999999999999999999999999999999997644 4589999999998888776644 6677665
Q ss_pred HhcCCC-CHHHHHHHHHHHhCCccccCcCCCCccchhhhhhhhccccccCCcccCCCCCCCCCCCCCCCCChHHHHHHHH
Q 000076 1806 LAAKPG-SPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLF 1884 (2415)
Q Consensus 1806 ~a~~~~-~~~sL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~eq~~~lF 1884 (2415)
+..-++ +.+-..+..+-..+.. ...+..| ....+.||+..+|
T Consensus 1459 Le~la~s~d~~vk~f~~~~~~tm---------------------~~~v~kg----------------nKqq~ndqi~iVf 1501 (2005)
T COG5103 1459 LEMLAGSSDPKVKDFFQKISNTM---------------------MHIVAKG----------------NKQQLNDQIIIVF 1501 (2005)
T ss_pred HHHHhccCChhHHHHHHHHHHhh---------------------hhccccc----------------ccccccceEEEee
Confidence 211110 1111111111111100 0000001 1245678999999
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHcCcccCCchhHHHHHHHHHHHHHHhhhccccCCCCCCCCCccccccchhhhHHH
Q 000076 1885 AEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYA 1964 (2415)
Q Consensus 1885 ~EWv~l~~~~~~~d~~~~~Fi~qL~~~giL~~dd~~~~FfR~~~E~sV~~~~~~~~~~~g~~~~~s~~~~~~f~~iDA~a 1964 (2415)
.|||++.++...+|..-..|+.||+++|+++.+++...|||+.+|.+|..|.+.. +.+.+|..||||+
T Consensus 1502 ~ewv~llrn~~~nD~v~~~F~~ql~e~g~~s~~~~~~~ffk~sle~~i~aF~e~~------------pta~~y~~IDal~ 1569 (2005)
T COG5103 1502 SEWVELLRNCRFNDTVPEMFLPQLMERGDYSASLDIRSFFKVSLEHFIRAFHERI------------PTAYCYLKIDALP 1569 (2005)
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHccCCCchHHHHHHHHhhHHHHHHHHhhcC------------CcccceeeccchH
Confidence 9999999999999999999999999999999999999999999999999997432 2478999999999
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCchHHHHHHHHHhhcCCCCCCCcchHHHHHHHHH
Q 000076 1965 KLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFAN 2044 (2415)
Q Consensus 1965 kLi~~lvk~~~~~~~~~k~~~L~kiLsiiv~vl~~dhe~~~~~FnQRpyfRlfs~LL~el~~~d~~l~~~~~~il~~fa~ 2044 (2415)
.||+.++++. +..+.++..|++||++++++|+.++|..+++.||+|+||||||++|.||.......+++-..+.+.|-+
T Consensus 1570 sLi~n~l~~e-G~te~T~s~~~~kii~~i~~VFae~h~~~~e~~h~~~fFrLfS~il~e~~dv~~~d~s~fv~~~Sv~y~ 1648 (2005)
T COG5103 1570 SLIKNRLYEE-GSTEGTVSVLFRKIIKDILFVFAEAHRKRAEFVHNYLFFRLFSRILIETLDVIDEDTSCFVNNRSVVYS 1648 (2005)
T ss_pred HHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH
Confidence 9999999996 445567889999999999999999999999999999999999999999987554445555678899999
Q ss_pred HhhhcCCCCCCchhHHHhHHhhcccchHhhhcCCCCCChHHHHHHHHHHHHhhhhhhcCCCCCchHHHHHHhHHHHHHHH
Q 000076 2045 AFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVL 2124 (2415)
Q Consensus 2045 ~l~~LqP~~~PgFaFaWl~LISHR~Fmp~lL~~~~~~GW~~~~~LL~~LlkFl~~~l~~~~ls~~i~~lYkGtLRilLVL 2124 (2415)
+|..|||.+||||+|||++|+|||+.+|++|+.|+.+||..|..+|+++|||++ +++..++.+++++|+|+||+.||+
T Consensus 1649 ~f~alqP~~fPgFtfawl~llSH~~llP~vL~v~Nd~~~d~f~~~lmsflKFlD--~s~~~v~~~~~~ly~Gflr~iLv~ 1726 (2005)
T COG5103 1649 IFEALQPSRFPGFTFAWLELLSHKFLLPKVLLVNNDKINDLFSEGLMSFLKFLD--LSEEGVVLVMEALYCGFLRTILVY 1726 (2005)
T ss_pred HHHHcCcccCCchHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcchheeeee
Confidence 999999999999999999999999999999999999999999999999999998 777788899999999999999999
Q ss_pred HhcchhHHHHHhHhhhccCCCCccccccceecccCCCCCCCCCCCCCCCCCCCcCcCCCCccccchHHHHHHhhhhHHHH
Q 000076 2125 LHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVD 2204 (2415)
Q Consensus 2125 lHDFPEFL~eyh~~lcd~IP~~CiQLRNlILSAfP~~mrLPDPftp~LkvD~LpEi~~~P~I~~d~~~~L~~~~lk~~vD 2204 (2415)
+||||-||+++||++...+|+.|+||||+||||||++|.+||||..||||.++|+|+..|.++.|+...| .++++.+|
T Consensus 1727 ~hD~P~FLit~~yql~~~~P~e~vqlrNm~lSa~Psdlt~p~Pfa~~Lkv~~~P~~k~~p~~f~d~~v~l--e~~~s~~d 1804 (2005)
T COG5103 1727 LHDFPGFLITQIYQLFRRNPLECVQLRNMMLSAYPSDLTYPCPFAQGLKVQEYPHIKNFPNQFRDRIVPL--EGQNSFFD 1804 (2005)
T ss_pred eccCchHHHHHHHHHhhcCCHHHHHHHHHHHHhccccCcCCCchhcccccccChHhhhhhHHhcccccch--hhcccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887 47899988
Q ss_pred HHhccCCCCcchHHHHHHHccCCccccccCCcc---ccHhHHHHHHHHHHHHHHHhhhccCCcccccCCCCchhhhh-hh
Q 000076 2205 DYLKTGQPGSSFLSELKQKLLLPPSEAASAGTR---YNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFL-VS 2280 (2415)
Q Consensus 2205 ~yL~~r~~~~~~l~~l~~~L~~~~~~~~~~G~~---yNv~liNAlVLyVG~~Ai~~~~~~~~~~~~~~~~~~~~~f~-~s 2280 (2415)
| |.+.++.++.+.+++...-+.....|.. ++-..+-++|.|+|++++..... .|+ +|
T Consensus 1805 --L--e~~~~S~l~~~~s~~~~d~y~~k~t~~~~~~~dn~~~~~~V~h~~~es~~~~~~---------------~f~~ks 1865 (2005)
T COG5103 1805 --L--EACLRSALQNRTSVKVTDLYIGKNTPLWVYLIDNLNEMDAVSHTVVESIKFMIE---------------RFMHKS 1865 (2005)
T ss_pred --h--HHHhhhhhhHHHHHHHHHhhccccCceeeeeeccHHHHHHHHHHHhhhHHHHHH---------------HHhccc
Confidence 6 6666677877777766544433333322 24577889999999998653211 233 35
Q ss_pred HHHHHHHHHHhccChhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHhhccc----chhhHHHHHHHHHHHhccCCCCChH
Q 000076 2281 AALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEAN----QEIIQEQITRVLFERLIVNRPHPWG 2356 (2415)
Q Consensus 2281 ~~~~il~~L~~~ld~EgRY~ll~aiaNQLRYPNsHT~yFS~vlL~LF~e~~----~~~IqEqItRVLLERLIvnrPHPWG 2356 (2415)
+.+.++..++..+++|.||+++.||+|||||||+||+|||||+||+|.+.+ +-.||||||||||||+|||||||||
T Consensus 1866 ~~~t~l~~~~r~g~~~~rY~ll~ai~~qlRYp~ihTy~fs~vfl~~fkS~~~N~QkL~ikE~m~t~lLeRII~NrPH~WG 1945 (2005)
T COG5103 1866 EILTMLWIRMRAGGPPKRYFLLTAILAQLRYPEIHTYDFSRVFLKSFKSHGYNPQKLLIKEQMTTVLLERIICNRPHPWG 1945 (2005)
T ss_pred cHHHHHHHHHhcCCCchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHcCCCCcch
Confidence 689999999999999999999999999999999999999999999998863 4579999999999999999999999
Q ss_pred HHHHHHHHhhCCCCccccCCcCcchHHHHHHHHHHHHhcCCCCCCC
Q 000076 2357 LLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVD 2402 (2415)
Q Consensus 2357 LliTFiELikNp~Y~Fw~~~Fv~~aPEIe~lF~svarsc~~~~~~~ 2402 (2415)
|+|||+||+||.+||||+||||+..|||.++|+++.+++|.+..+.
T Consensus 1946 l~i~FTeLlkNeD~Nf~k~Pyikr~~EI~~lfdsL~e~v~a~ssan 1991 (2005)
T COG5103 1946 LLITFTELLKNEDYNFWKHPYIKRNDEICRLFDSLHEHVMAPSSAN 1991 (2005)
T ss_pred hheeHHHHhcccccchhcCcccccCHHHHHHHHHHHHHhhCccccc
Confidence 9999999999999999999999999999999999999999776544
No 2
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=100.00 E-value=1.9e-290 Score=2713.90 Aligned_cols=1483 Identities=37% Similarity=0.591 Sum_probs=1158.8
Q ss_pred hhHHHHhhcCCchhHHHHHHHhhcccccCHHHHHHHHhhcCcchHHHHHHHHHHHHhhcccccccCCCCCCCcccccccc
Q 000076 532 KILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYM 611 (2415)
Q Consensus 532 k~L~~ll~~~p~~f~idLa~lAsrre~l~lekWl~~~l~~~~~~f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~ 611 (2415)
.-++-|.|+.||.++++.+.+|+.++++++..|+.+++.--.+ |..++--... .+..++.+..+...
T Consensus 82 ~~~~~v~Nm~pn~~~~n~~~la~~~~a~~F~~~l~~~~~~~~~-----~~~~~s~~~~--------~~q~~~~~~~~~~~ 148 (1591)
T KOG1831|consen 82 PGMDIVGNMSPNLEALNIRDLASCFGAVNFSIWLLESLYLMID-----DAVPLSLIIT--------APQEPSFKPWPNER 148 (1591)
T ss_pred CcchhhhhcCcchhhhchHhhhhhcCCCCchhhhcccceeecc-----CCCcccceee--------ccccccCCCChhHH
Confidence 4578899999999999999999999999999999988653221 1222211111 01111111111100
Q ss_pred -hhHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCCCCCC-----CCCCCCchhHHHHHHHHHHHHhccCC
Q 000076 612 -EKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADS-----STSEGYADDIEAEANSYFHQMFSGQL 685 (2415)
Q Consensus 612 -etv~~lL~~L~~~~~~~~s~~~~e~l~~v~~~~i~~~PrL~n~~~~d~-----~~~~~~~~diE~ean~yfqkmY~~ei 685 (2415)
.++..++-..... ++ -.+..-+++.+|. .++.+|++|||+|||+||||||+ .+
T Consensus 149 ~~qi~~l~p~~~~q---------------~q-----rt~s~sa~~~~d~v~~~~~~~~~~s~die~E~~sYfqkiYn-~l 207 (1591)
T KOG1831|consen 149 FAQIYFLLPIGPSQ---------------LQ-----RTESVSAPGPHDPVFFARQVSIEFSRDIEFEVNSYFQKIYN-CL 207 (1591)
T ss_pred HHHHHHHccCChhh---------------cc-----ccccccCCCCCCchhhhcccccccChhHHHHHHHHHHHHHH-Hh
Confidence 1122211111000 01 1111123333443 35578999999999999999999 99
Q ss_pred CHHHHHHHHHHhhcCCCccchhhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000076 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (2415)
Q Consensus 686 sI~~iV~~L~r~K~S~~~rdqdvFaCMih~LFdEYrFF~~YP~~eL~~TAvLFGslI~~~Lv~~~~L~iALr~ILeAlrk 765 (2415)
+|+++|++|+|||.|.++|||++|+||.|+||||||||++||++||++||+||||||.|+|+++.+||+|+|+|++|+++
T Consensus 208 sI~~vI~lL~rfr~Se~~Rdq~vf~C~~~~lF~EyrFF~dYPe~~L~~Ta~lfGsiI~~~Lls~v~l~la~R~Vl~~l~~ 287 (1591)
T KOG1831|consen 208 SIFQVIDLLQRFRLSELPRDQEVFACAAHNLFEEYRFFRDYPELALATTAVLFGSIIFFVLLSFVELGLALRLVLAALGI 287 (1591)
T ss_pred hHHHHHHHHHhcccccChhhhhHHHHHHhhccccccccccCHHHHHHHHHHhcchhHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhccCCCCCCCCCCCcccccccccccC
Q 000076 766 PADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATS 845 (2415)
Q Consensus 766 p~~SkMf~FGiqAL~qF~~RL~EwPqyC~~Llqip~L~~~~p~l~~~ie~~l~~~~~~~~~~~~~~~~~~~q~~~~q~~~ 845 (2415)
||+||||+||+|||.+|+.||.+||+||++|+.+|++...+|++|++|....- +.. . +.
T Consensus 288 P~~skl~~Fgv~Al~~frskL~~Yp~yC~~Il~~~~~s~~~~~l~~~I~~~~~---san----a---~~----------- 346 (1591)
T KOG1831|consen 288 PPSSKLFIFGVQALLPFRSKLLDYPKYCFDILSIPPFSKFRPHLYDSIWETAT---SAN----A---TT----------- 346 (1591)
T ss_pred CChhHHHHHHHHHHHHHHHHhcchHHHHHHHHhCcchhhccHHHHHHHHhhhh---hcc----C---CC-----------
Confidence 99999999999999999999999999999999999999999999999966321 110 0 00
Q ss_pred CCCCccCCcccccccchhhhHHhhhhccccccccccccccccCCCCCccccCC-CCCcccCCCCCchhhhhcccCCCccc
Q 000076 846 GNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIG-QPSSVAPLGDTSSAQKLHNAVSAPAM 924 (2415)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~qq~~~~~l~~~~~~~~~~~~~~~p~~~~i~-~~~~~~~~~~~~~~~~~~~~p~~~~~ 924 (2415)
....|..+..+ .++++
T Consensus 347 ------------------------------------------~~s~pv~~~~p~~~~av--------------------- 363 (1591)
T KOG1831|consen 347 ------------------------------------------RKSDPVRSASPYLDSAV--------------------- 363 (1591)
T ss_pred ------------------------------------------cccccchhccccccccc---------------------
Confidence 00001000000 00000
Q ss_pred cccCCCccCCCCCccccccccccchHHHHHHhhhcCCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhH
Q 000076 925 LSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPW 1004 (2415)
Q Consensus 925 ~~~~~~~~~p~~~~~~~~~~~~~ni~tL~~a~e~~~~~~e~Ppe~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~W 1004 (2415)
+.+ .+ ..+.+.|||+|+|||+|++||+|+.|+.+|++|+|++|+++||+|
T Consensus 364 -s~~----~~-------------------------P~n~~~~~e~v~dkilF~lNNlsq~N~~qKvdevk~~ltp~y~~W 413 (1591)
T KOG1831|consen 364 -SKH----VE-------------------------PKNAEGPPEDVVDKILFPLNNLSQLNFNQKVDEVKEILTPEYYPW 413 (1591)
T ss_pred -ccc----CC-------------------------cccccCCchhhhhhheeeechHhhhhhHHHHHHHHHHcChhhHHH
Confidence 000 00 112358999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcccCCcchHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcc
Q 000076 1005 FAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQV 1084 (2415)
Q Consensus 1005 FA~YLV~kRasiEPN~H~LYl~fl~~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkP 1084 (2415)
||+|+|+||||+|+|||+||.+|++.+++. +| -+||++|||||||||.||||||||
T Consensus 414 fs~YiV~qR~S~E~Nf~~LYskFi~ai~n~--------~t----------------~~dk~~LKNLgsWLG~iTl~rNkP 469 (1591)
T KOG1831|consen 414 FSQYIVTQRVSKEINFHELYSKFISAIKNS--------VT----------------ESDKRLLKNLGSWLGEITLGRNKP 469 (1591)
T ss_pred HHHHHhhhhhhcccchHHHHHHHHHHHhCc--------cc----------------hhHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999998 22 179999999999999999999999
Q ss_pred cccCCCChhhHHHHHHhcCceEEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcC
Q 000076 1085 LRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLG 1164 (2415)
Q Consensus 1085 I~~k~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~~~~S~vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ 1164 (2415)
|++.++|||+||+|||.+|++..|+|||||||+.|.+|+|||||||||||||++|+|+|+.||||+|||||||||||+||
T Consensus 470 I~~l~l~~kslLlEaY~sg~ll~VvPFVaKIL~~asksrIFkpPnpW~~gIlklL~ELh~e~d~klnLkFEIEVLlkslN 549 (1591)
T KOG1831|consen 470 IKELDLDFKSLLLEAYGSGRLLPVVPFVAKILEGASKSRIFKPPNPWTMGILKLLAELHQEADLKLNLKFEIEVLLKSLN 549 (1591)
T ss_pred hHHhhhhHHHHHHHHhccCceeecchHHHHHHHhhhhccccCCCCchHHHHHHHHHHhcccccceeeeeeeeeehhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccccchhhccCCCCCCCCCcCCCCCcccCCCCcCccCCCCCCCCCCCcCCCCCCCCCccccccccccccc
Q 000076 1165 VDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRL 1244 (2415)
Q Consensus 1165 ld~~dieps~~L~~r~~~~~~~~d~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 1244 (2415)
+++++++|+++++|..+. .+... .+.++.. +..+++.. |
T Consensus 550 ~~l~~le~~~~lnn~~~i-~~~L~-----------~~~~e~h-------~~~~~~~~---------------q------- 588 (1591)
T KOG1831|consen 550 VILSELEPSETLNNIIRI-KKQLV-----------LMKLETH-------QSLELEDI---------------Q------- 588 (1591)
T ss_pred chHhhcchhhHHhhHHhH-HHHHc-----------cCChhhc-------cccccCch---------------h-------
Confidence 999999999999994431 11100 0000000 00000000 0
Q ss_pred CcCcchhHHHHhhccCCCCCCccccccccCCCCCCCccccccc-CCCCCCceEEecccccccccchhhhhhHHHHHHHHH
Q 000076 1245 SSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAI 1323 (2415)
Q Consensus 1245 ~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~-~ip~l~~~~~in~~l~~~~~~p~Lk~iv~~Ai~rAI 1323 (2415)
...+.+ ...|++++... ...++.+++...| ||+.|++|+.|++++|
T Consensus 589 ------------------------~~~~~~--~~~fa~~~~n~~t~~~~i~~l~~~~-------~P~~Kh~~~~Aleqsv 635 (1591)
T KOG1831|consen 589 ------------------------QVTLGN--TIAFAYDARNVSTATEVIKQLDLRP-------HPDIKHRVQEALEQSV 635 (1591)
T ss_pred ------------------------cccccC--CccceecccccchhhhhhhhccCCC-------CccHHHHHHHHHHHHH
Confidence 000000 11144444321 1123333344333 8999999999999999
Q ss_pred HhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHH
Q 000076 1324 KEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASE 1403 (2415)
Q Consensus 1324 rEII~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTCkEPLr~si~~~Lr~ll~~~~~~~~ 1403 (2415)
+|||.||||||+.||++||+.||+||||+|+||+|||.||+.|||+||++||++||||||+++|+++|+....++.....
T Consensus 636 ~eii~~Vv~rs~~IA~ttTe~lirKDFA~e~~es~l~~Aa~~M~r~la~~lAmiTcreplk~am~~nl~~~~~~~l~~~~ 715 (1591)
T KOG1831|consen 636 VEIIEPVVERSSGIASTTTESLIRKDFALERDESRLRLAASQMVRELAAGLAMITCREPLKVAMSSNLVLAALSLLSLMA 715 (1591)
T ss_pred HHHHHHHHHHhhceeehhHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877666778
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCCCcCcccccccccCCCCCCCCCCCCC
Q 000076 1404 LLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHL 1482 (2415)
Q Consensus 1404 ~~E~~i~~~vnDNldLac~iIEKaA~EkAv~eIde~l~~~~~~RR~hre~-~g~~f~D~~~~~~~~~~LPe~LrlkpgGl 1482 (2415)
.+++++..+++||++++|++|||+|+|||++|||.+|++++..|+.||++ ++.||+|+....+. ..|||++|+++||+
T Consensus 716 ai~~a~~t~~~dNv~l~~~~Iek~a~eka~~dI~~~L~q~~~~Rv~~k~~~~~~~fvD~~~~~~~-~~LP~~vr~~~~~~ 794 (1591)
T KOG1831|consen 716 AIARAADTLQSDNVELVVKFIEKTAIEKATQDIDSRLEQDICGRVFHKENPEVMPFVDLLSAAYS-CTLPEVVRLKIGGL 794 (1591)
T ss_pred HHHHHHHHHHhhchhhHhhhhHHHHHHHHHHHHHHHHHHhhHhheecccCCccccchhhhhhhhh-ccCcHhhhcccCCC
Confidence 99999999999999999999999999999999999999999999999997 68999999875654 45999999999999
Q ss_pred ChhHhHhhhhhhc-CcCCcC-CCCCCCccccCccCCCCchhhhhcccCCCCCCCCCCcCCCCCCCcccccCCccccCCCc
Q 000076 1483 SVSQQRVYEDFVR-LPWQNQ-SSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTT 1560 (2415)
Q Consensus 1483 ~~~Q~~VYEdF~r-~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 1560 (2415)
+|+|++|||+|+| +|+... ++...+.. | .+++.++++...
T Consensus 795 ~~~l~~vYe~F~k~i~~~~~~s~~~~la~----------------~----------------------~~~~~dlt~~~~ 836 (1591)
T KOG1831|consen 795 TPQLFRVYEEFPKPIPGFLGNSSRKDLAE----------------Y----------------------ITESSDLTQPHV 836 (1591)
T ss_pred CHHHHHHHHHcccccccccccCCCccccc----------------c----------------------cCCCccccchhh
Confidence 9999999999998 553211 00000000 0 011111111000
Q ss_pred ccCcccccccccccccCCCCCcccccccccccc-cCChhhhhhhccCCCCCCCCCCCCCCCCCCCchhhhcccccccccc
Q 000076 1561 ESTSAGFLSTSLVHIGAADGGILHNSESESVNA-AFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSL 1639 (2415)
Q Consensus 1561 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1639 (2415)
.+..+... .+++.++ .... .+...+...+.. .+++ ....|+.+
T Consensus 837 -------~s~~~~lv------~~ei~~~-~~~~a~~~~i~~~~l~~----------~a~s---~~~~m~~v--------- 880 (1591)
T KOG1831|consen 837 -------ISNALDLV------VREICGA-IVEKACQTAIQTGMLQF----------KAQS---VEKLMEEV--------- 880 (1591)
T ss_pred -------hhHHHHHH------HHHHHHH-HHHHHHHHHHHhhhhhh----------hhhc---chhhHHhc---------
Confidence 00000000 0000000 0000 000000000000 0000 00112211
Q ss_pred chhhhHHHHHHHHHHHHHHhhcCccchhHHHHhhhhHHHHHhhcChhHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHH
Q 000076 1640 QTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAA 1719 (2415)
Q Consensus 1640 ~~~~~le~~~~~~~~l~~l~~~~~~~~~i~~~i~~v~~~i~~~~~rde~al~~aqkv~~~L~~~~~~~l~~e~~~~~L~~ 1719 (2415)
+.++..-........+..++. ..-..-.+.+..-++..+. ..+--.+++..+|+-
T Consensus 881 -----------------------~~~~~~~~~~~~~~~~~ar~i-~hli~~~V~~~~~~l~~~~-~~~~I~~i~m~iL~~ 935 (1591)
T KOG1831|consen 881 -----------------------PARNMVVNLVNSLLLLVARSI-EHLISGLVSYFMKNLELDF-STEKIFKIIMEILDN 935 (1591)
T ss_pred -----------------------cchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence 111111111111111111100 0000111222110111111 112234577788888
Q ss_pred HHHHhHH-HHHHHHHhhhccccccccCHHHHHHHHhhCCCChhhhHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCChhh
Q 000076 1720 IRDVCKL-VVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVV 1798 (2415)
Q Consensus 1720 L~~~~~~-~~kevt~wl~~~~d~rk~N~~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~~~~~~ 1798 (2415)
+|....+ ..+.|+-.+..+++++|||++.+..|++.+|++..++|.+|+++||+|.|..++.|+++|++.....+..+.
T Consensus 936 ic~~~qk~~~~~vs~a~s~~~~~~e~n~~~~~~L~~~~l~~~~~vd~~l~~amDs~~n~~vi~f~iell~~~~~~dnvi~ 1015 (1591)
T KOG1831|consen 936 ICRFIQKAGVRKVSEAISSSRSSLEYNIEKAEHLILSLLLDSGHVDKHLAKAMDSGGNQEVIAFLIELLRIAYGGDNVIA 1015 (1591)
T ss_pred HHHhccHHHHHHHHHHHHhchHHHHhhHHHHHHHHHHhccChhhHHHHHHHHhccCCChHHHHHHHHHHHHhccCcchhh
Confidence 8887743 555688888899999999999999999999999999999999999999999999999999998887776322
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhCCccccCcCCCCccchhhhhhhhccccccCCcccCCCCCCCCCCCCCCCCChHH
Q 000076 1799 ISELHNLLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPE 1878 (2415)
Q Consensus 1799 ~~~~~~~~a~~~~~~~sL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~e 1878 (2415)
....+ -+.++-+.+..+.+.-.......+....+.+...... .+ ++. +...-....+|+.++.|
T Consensus 1016 -~~~~~------~~~~t~E~~~ri~q~v~s~~~~~g~~~~~~~~~v~~~-~k---~~s-----~~~~m~~~~~~~~~lt~ 1079 (1591)
T KOG1831|consen 1016 -DEWKN------LFKETKEELFRILQSVESSEDKSGECASLCDYIVEHA-IK---SGS-----SADFMFRRMDDKQKLTE 1079 (1591)
T ss_pred -hhhhh------hhhhHHHHHHHHHHHHhcccccchhhhhHHHHHHHhc-cC---CCC-----chhHHHHhcCcchhhhh
Confidence 11111 2455666666643321110000000111111100000 00 000 00001123457789999
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHcCcccCCchhHHHHHHHHHHHHHHhhhccccCCCCCCCCCccccccc-
Q 000076 1879 QVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSF- 1957 (2415)
Q Consensus 1879 q~~~lF~EWv~l~~~~~~~d~~~~~Fi~qL~~~giL~~dd~~~~FfR~~~E~sV~~~~~~~~~~~g~~~~~s~~~~~~f- 1957 (2415)
|++.+|.|||.+|+.+..++....+||+||+++|||++||..++|||.|+|+||+.++..... ....+
T Consensus 1080 K~~~v~~~Wv~L~~~~~~~~~s~~~fi~ql~~~GVls~dd~ltqFfr~~~el~~~i~~~a~~~-----------~a~~~i 1148 (1591)
T KOG1831|consen 1080 KTEIVFLEWVILLNDSRKNDESLAAFIQQLNEIGVLSTDDLLTQFFRADLELCVVIFLEASLI-----------TALVQI 1148 (1591)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHcCcccchHHHHHHHHhhhhhhHHHHHHhccc-----------ccchhh
Confidence 999999999999999999999999999999999999999999999999999999999854310 12222
Q ss_pred hhhhHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCchHHHHHHHHHhhcCCCCCCCcchHH
Q 000076 1958 LAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQ 2037 (2415)
Q Consensus 1958 ~~iDA~akLi~~lvk~~~~~~~~~k~~~L~kiLsiiv~vl~~dhe~~~~~FnQRpyfRlfs~LL~el~~~d~~l~~~~~~ 2037 (2415)
.+++|+.+....+.+|.. +++|.+|++||+++|++|+++||+++|+.|||+||||+|+|+|.||..++.+++.+.++
T Consensus 1149 ~tv~~~~~~l~~l~~f~d---~~tk~dl~~KI~~livgv~akdHs~~~e~f~~~~y~Rlf~~ll~E~~~~~~~le~~~~~ 1225 (1591)
T KOG1831|consen 1149 CTVYAFICTLEMLDGFVD---LPTKIDLFNKILNLIVGVFAKDHSERGEYFNQCPYFRLFSMLLPELMTADSVLEPISLD 1225 (1591)
T ss_pred hhHHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHhcchHHhhhhHhhCcHhHHHHHHHHHhccccchhhhHHHH
Confidence 578888888888888862 26899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCchhHHHhHHhhcccchHhhhcCCCCCChHHHHHHHHHHHHhhhhhhcCCCCCchHHHHHHhH
Q 000076 2038 ILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGT 2117 (2415)
Q Consensus 2038 il~~fa~~l~~LqP~~~PgFaFaWl~LISHR~Fmp~lL~~~~~~GW~~~~~LL~~LlkFl~~~l~~~~ls~~i~~lYkGt 2117 (2415)
|+++|+++||.|||.++|||+||||+|||||+|+|++|..+++|||+.|++|+++|||||+||+|+.+++++++.+||||
T Consensus 1226 i~SaF~~tfhalqp~~~Pgf~fawL~lishr~li~~~L~~~~~k~~~~~~~llislfkfL~~ylrn~~~~k~~~~lykgT 1305 (1591)
T KOG1831|consen 1226 ILSAFKNTFHALQPRRFPGFAFAWLELISHRGLIPRMLAETNQKGWPLYAQLLISLFKFLAPYLRNYELFKPVQLLYKGT 1305 (1591)
T ss_pred HHHHHHHHHHHhCcccCcccceeeeecccchhHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhHHHHHhHhhhccCCCCccccccceecccCCCCCCCCCCCCCCCCCCCcCcCCCCccccchHHHHHHh
Q 000076 2118 LRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAK 2197 (2415)
Q Consensus 2118 LRilLVLlHDFPEFL~eyh~~lcd~IP~~CiQLRNlILSAfP~~mrLPDPftp~LkvD~LpEi~~~P~I~~d~~~~L~~~ 2197 (2415)
|||+|||+||||||||+|||.|||.|||+|+||||+|||||||+|+|||||++|||||+|||+..+|+|+++++. +.+.
T Consensus 1306 LrVilvllhDfp~fl~~~hy~~~~~iPp~cvqlrniilsafp~~m~lpdpf~~~lkve~lpe~~~ap~i~~~~~~-i~~~ 1384 (1591)
T KOG1831|consen 1306 LRVILVLLHDFPEFLCEYHYGLCDTIPPNCVQLRNIILSAFPSNMRLPDPFAVNLKVEMLPEGFYAPRILYSITQ-IMPS 1384 (1591)
T ss_pred hHHhhcccccchHHHHHhhhhccCCCCcHHHHHHHHHHHhccccCcCCCccccccchhhhhhhhcCchhcCCHHH-hccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred hhhHHHHHHhccCCCCcchHHHHHHHccCCccccccCCccccHhHHHHHHHHHHHHHHHhhhccCCcccccCCCCchhhh
Q 000076 2198 QMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAF 2277 (2415)
Q Consensus 2198 ~lk~~vD~yL~~r~~~~~~l~~l~~~L~~~~~~~~~~G~~yNv~liNAlVLyVG~~Ai~~~~~~~~~~~~~~~~~~~~~f 2277 (2415)
..|+++|.|+++|.+. +|+..++.-++... .+|++||..+|||+|+|||++||.+++++....+++ ++
T Consensus 1385 ~~~~dl~a~l~s~~~~-t~l~~~~~~~~~~~----~~~~~~~~~~~naiVlyvG~~ai~~~~~~~~~~~~~-------~i 1452 (1591)
T KOG1831|consen 1385 NFRKDLDARLKSSSPV-TFLSCLPQLLQVIK----EPGTRYNNQLINAIVLYVGIQAIAHLRRKSQNPSTS-------TI 1452 (1591)
T ss_pred ccCCCHHHHhhccccH-hHHHHhhHHHHHhc----CccccccHHHHHHHHHHHHHHHHHHHHhccCCCccc-------cc
Confidence 9999999999999986 99999998877643 479999999999999999999999999877665544 46
Q ss_pred hhhHHHHHHHHHHhccChhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHhccCCCCChHH
Q 000076 2278 LVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGL 2357 (2415)
Q Consensus 2278 ~~s~~~~il~~L~~~ld~EgRY~ll~aiaNQLRYPNsHT~yFS~vlL~LF~e~~~~~IqEqItRVLLERLIvnrPHPWGL 2357 (2415)
+|+++|+||++|+.+||+||||++++||||||||||+|||||||++||||.+++...|||||||+++||+||||||||||
T Consensus 1453 t~s~~~~i~~nL~~nld~e~ry~~l~aianqlryp~~ht~~~s~~~l~lfk~~~~~pike~i~~~~lerii~nrPHpWGl 1532 (1591)
T KOG1831|consen 1453 THSAYMDIFQNLIVNLDTEGRYLLLNAIANQLRYPNSHTYYFSCVFLYLFKRAGNNPIKEQITRVLLERIIVNRPHPWGL 1532 (1591)
T ss_pred ccCchhhHHHHHHHhcchhhhHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcCCCCCchh
Confidence 78999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHHhhCCCCccccCCcCcchHHHHHHHHHHHHhcCCCCCCCc
Q 000076 2358 LITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDD 2403 (2415)
Q Consensus 2358 liTFiELikNp~Y~Fw~~~Fv~~aPEIe~lF~svarsc~~~~~~~~ 2403 (2415)
+|||+||||||.||||+||||+|||||.+||++||++|+....+..
T Consensus 1533 litF~eLikN~~YNfw~~~fv~~~pEI~rlfqsl~~~~~~~s~s~~ 1578 (1591)
T KOG1831|consen 1533 LITFTELIKNPDYNFWDHPFVQCAPEIKRLFQSLAKYCKAYSTSEQ 1578 (1591)
T ss_pred HHHHHHHHcCCCcccccCcccccCHHHHHHHHHHHHHhhCcccccc
Confidence 9999999999999999999999999999999999999996554444
No 3
>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [].
Probab=100.00 E-value=2.5e-115 Score=1070.85 Aligned_cols=366 Identities=59% Similarity=1.051 Sum_probs=342.0
Q ss_pred HHHHhhcCCCC--CCCcch--HHHHHHHHHHhhhcCCCCCCchhHHHhHHhhcccchHhhhc-CCCCCChHHHHHHHHHH
Q 000076 2019 NWLLDMSSLDP--VADGSN--FQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLI-GNGQKGWPYIQRLLVNL 2093 (2415)
Q Consensus 2019 ~LL~el~~~d~--~l~~~~--~~il~~fa~~l~~LqP~~~PgFaFaWl~LISHR~Fmp~lL~-~~~~~GW~~~~~LL~~L 2093 (2415)
||||||+..+. .++..+ .+++.+||++||.|||.++|||+|||++|||||+|||+||. .++++||+.|++||+++
T Consensus 1 ~ll~e~~~~~~~~~~~~~~~~~~~~~~fa~~l~~lqP~~~PgF~faWl~LisHR~Flp~lL~~~~~~~gW~~~~~Ll~~l 80 (379)
T PF04054_consen 1 SLLCELHAISIEDSLESEELDRQFLLAFASFLHSLQPLYFPGFAFAWLELISHRMFLPKLLRNSPDQKGWPAYTRLLIDL 80 (379)
T ss_pred CeeeecccCcccccchhhhhHHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Confidence 58999995332 334344 59999999999999999999999999999999999999999 88999999999999999
Q ss_pred HHhhhhhhcCCCCCchHHHHHHhHHHHHHHHHhcchhHHHHHhHhhhccCCCCccccccceecccCCCCCCCCCCCCCCC
Q 000076 2094 LQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLK 2173 (2415)
Q Consensus 2094 lkFl~~~l~~~~ls~~i~~lYkGtLRilLVLlHDFPEFL~eyh~~lcd~IP~~CiQLRNlILSAfP~~mrLPDPftp~Lk 2173 (2415)
|+|+++|+|+.+++++++++||||||++|||+||||||||+||++||++||++|+||||+||||||++|+|||||+||+|
T Consensus 81 l~Fl~~~l~~~~~~~~~~~lYkg~LRillvL~HDfPeFL~~~h~~lc~~iP~~ciQLrNiILsA~P~~~~lpDPf~~~lk 160 (379)
T PF04054_consen 81 LKFLGPYLKNEELSDAIKVLYKGTLRILLVLLHDFPEFLCEYHFSLCDVIPPHCIQLRNIILSAFPRNMKLPDPFTPGLK 160 (379)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhcChhHHHHHHHHHHhCCCCCCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcCCCCccccchHHHHHHhhhhHHHHHHhccCCCCcchHHHHHHHccCCcccccc----CCccccHhHHHHHHHH
Q 000076 2174 IDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAAS----AGTRYNVPLINSLVLY 2249 (2415)
Q Consensus 2174 vD~LpEi~~~P~I~~d~~~~L~~~~lk~~vD~yL~~r~~~~~~l~~l~~~L~~~~~~~~~----~G~~yNv~liNAlVLy 2249 (2415)
||++|||+++|.|++|++..|++.+||+.||+||++|+ +.+++++|+++|+.++.+... .|++||+++|||+|+|
T Consensus 161 vd~l~e~~~~P~i~~d~~~~L~~~~lk~~vd~~l~~~~-~~~~l~~i~~~l~~~~~~~~~~~g~~~~~~n~~linalVly 239 (379)
T PF04054_consen 161 VDRLPEIKQAPKILSDPTEDLQQAGLKKPVDQYLRNGP-SESLLAQILHKLQLPEPEETNGFGFDGVKYNVKLINALVLY 239 (379)
T ss_pred chhchhhccCCccccchhhhcchHHHHHHHHHHHHhCC-CHHHHHHHHHHhcCCccccccccCCCCccccHHHHHHHHHH
Confidence 99999999999999999999999999999999998744 459999999999998776542 5799999999999999
Q ss_pred HHHHHHHhhhccCCcccccCCCCchhhhhhhHHHHHHHHHHhccChhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHhh-
Q 000076 2250 VGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYA- 2328 (2415)
Q Consensus 2250 VG~~Ai~~~~~~~~~~~~~~~~~~~~~f~~s~~~~il~~L~~~ld~EgRY~ll~aiaNQLRYPNsHT~yFS~vlL~LF~- 2328 (2415)
||++|+.+.+.++..+.+.++ ++++++|++|++++|+||||++++||||||||||+|||||||+||+||+
T Consensus 240 vg~~a~~~~~~~~~~~~f~~~---------s~~~~ll~~Li~~ld~E~RY~ll~aiaNqLRYPN~HT~~Fs~~lL~lF~~ 310 (379)
T PF04054_consen 240 VGIQAVAEAQKKSSAPSFNTK---------SPHVTLLSKLIHELDPEGRYYLLSAIANQLRYPNSHTHFFSCVLLNLFSS 310 (379)
T ss_pred HhHHHHHHHhccCCCcccccc---------ChHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 999999876665555444433 6799999999999999999999999999999999999999999999999
Q ss_pred ---cccchhhHHHHHHHHHHHhccCCCCChHHHHHHHHHhhCCCCccccCCcCcchHHHHHHHHHHHHh
Q 000076 2329 ---EANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARS 2394 (2415)
Q Consensus 2329 ---e~~~~~IqEqItRVLLERLIvnrPHPWGLliTFiELikNp~Y~Fw~~~Fv~~aPEIe~lF~svars 2394 (2415)
+.++++||||||||||||+||+|||||||+|||+||+|||+|+||++|||||+||||++|++|+||
T Consensus 311 ~~~~~~~~~IqEqItRVLLERliv~rPHPWGllitfiELikN~~y~f~~~pFik~~pEI~~~f~~~~~~ 379 (379)
T PF04054_consen 311 DMNDPNDEDIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPKYNFWELPFIKCAPEIEKLFESLARH 379 (379)
T ss_pred CCCccchhhhHHHHHHHHHHHHhcCCCCCccHHHHHHHHHhCccCCcccCcccccCHHHHHHHHHHhcC
Confidence 667899999999999999999999999999999999999999999999999999999999999986
No 4
>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. This entry represents a domain of unknown function found in the Not1 subunit of the CCR4-Not complex.
Probab=100.00 E-value=3.8e-46 Score=405.70 Aligned_cols=145 Identities=56% Similarity=0.809 Sum_probs=140.2
Q ss_pred chhhhhhHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHH
Q 000076 1308 HLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSI 1387 (2415)
Q Consensus 1308 ~p~Lk~iv~~Ai~rAIrEII~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTCkEPLr~si 1387 (2415)
||+||++|+.|+||||||||.|||||||+||++||++||+||||+||||+|||+|||+||++||||||+||||||||.+|
T Consensus 1 ~p~lk~~v~~Al~rai~Eii~pvveRsv~IA~~Tt~~LV~KDFa~E~De~~~r~aa~~Mv~~LA~sLalvTcrepL~~~i 80 (147)
T PF12842_consen 1 HPQLKRIVQNALDRAIREIISPVVERSVTIASITTEELVKKDFATEPDENKMRRAAHNMVRSLAGSLALVTCREPLRESI 80 (147)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-CC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000076 1388 SSQLRNSLQGL-TI-ASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHRE 1452 (2415)
Q Consensus 1388 ~~~Lr~ll~~~-~~-~~~~~E~~i~~~vnDNldLac~iIEKaA~EkAv~eIde~l~~~~~~RR~hre 1452 (2415)
.+|||+++++. +. .++++|+++++++|||+||||++|||+|+|||++|||++|+++|+.||+|||
T Consensus 81 ~~~l~~~l~~~~~~~~~~~~e~~i~~~~~dNlel~~~~Iek~a~eka~~~id~~l~~~~~~R~~~re 147 (147)
T PF12842_consen 81 QNNLRSLLSQLNGSTEQELPEQAIQQIVNDNLELACAFIEKAAMEKAIKEIDERLEPEIELRRRHRE 147 (147)
T ss_pred HHHHHHHHHhhcCCchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999843 33 4689999999999999999999999999999999999999999999999996
No 5
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=91.91 E-value=1.2 Score=51.47 Aligned_cols=179 Identities=21% Similarity=0.269 Sum_probs=119.8
Q ss_pred HhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHH---HHhhhcccCCcchHHHHHHHHHhCC--hhHHHHHHHHHHH
Q 000076 972 DKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQY---MVMKRASIEPNFHDLYLKFLDKVNS--KALNREIVQATYE 1046 (2415)
Q Consensus 972 DKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~Y---LV~kRasiEPN~H~LYl~fl~~l~~--~~L~~~Vl~eTy~ 1046 (2415)
.+|.-++|-+|++|++.-++|+.+..... +....+ .+.+++-.+|+|-.+|..++..++. +.+-+.+++.++.
T Consensus 2 ~~v~~~lnkLs~~n~~~~~~~l~~~~~~~--~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~~~~~~f~~~ll~~~~~ 79 (200)
T smart00543 2 KKVKGLINKLSPSNFESIIKELLKLNNSD--KNLRKYILELIFEKAVEEPNFIPAYARLCALLNAKNPDFGSLLLERLQE 79 (200)
T ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999888653 344444 3668899999999999999999987 5677888888887
Q ss_pred HHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcccccCCCChhhHHHHHHhcCce------EEEechhhhcccccC
Q 000076 1047 NCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLM------IAVIPFTSKILEPCQ 1120 (2415)
Q Consensus 1047 ~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LL~eaY~~g~L------~~VIPFV~KVLe~~~ 1120 (2415)
.....+... ...++...+|+--+||.+..-+=-+.. .+.+++-+--....- ..-|=.+|.+|+.|.
T Consensus 80 ~f~~~~e~~----~~~~~~~~~~~i~fl~eL~~~~~i~~~----~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G 151 (200)
T smart00543 80 EFEKGLESE----EESDKQRRLGLVRFLGELYNFQVLTSK----IILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCG 151 (200)
T ss_pred HHHHHHHHH----HHHhhhhHHhHHHHHHHHHHcccCcHH----HHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhh
Confidence 776654432 335667778888888888765443322 122222222222111 134456677888776
Q ss_pred CCccccCCCccHHH-HHHHHHHHhcCC---cccchhHHHHHHHHh
Q 000076 1121 SSLAYQPPNPWTMA-ILGLLAEIYSMP---NLKMNLKFDIEVLFK 1161 (2415)
Q Consensus 1121 ~S~vFkPPNPWtm~-IL~lL~Ely~~~---~LKlnLKFEIEVL~K 1161 (2415)
..--+ +.+|=.|. ++..+....... .+....+|-+|-|+.
T Consensus 152 ~~l~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~r~~~~l~~l~~ 195 (200)
T smart00543 152 KDLER-EKSPKLLDEILERLQDYLLKKDKTELSSRLRFMLELLIE 195 (200)
T ss_pred HHHcC-cccHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHH
Confidence 65433 56665554 445555555555 577777888887765
No 6
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=90.96 E-value=0.53 Score=65.93 Aligned_cols=123 Identities=16% Similarity=0.103 Sum_probs=98.1
Q ss_pred CccchhHHHHhhhhHHHHHhhcChhHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHhHHHHHHHHHhhhccccc
Q 000076 1662 DAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEE 1741 (2415)
Q Consensus 1662 ~~~~~~i~~~i~~v~~~i~~~~~rde~al~~aqkv~~~L~~~~~~~l~~e~~~~~L~~L~~~~~~~~kevt~wl~~~~d~ 1741 (2415)
+.+...|..++.++.+.|.+..+++... +|..+. .++..++|+.+..++.||...-...+++-+|++++-|.
T Consensus 919 ~~~~~~I~~i~m~iL~~ic~~~qk~~~~-----~vs~a~---s~~~~~~e~n~~~~~~L~~~~l~~~~~vd~~l~~amDs 990 (1591)
T KOG1831|consen 919 DFSTEKIFKIIMEILDNICRFIQKAGVR-----KVSEAI---SSSRSSLEYNIEKAEHLILSLLLDSGHVDKHLAKAMDS 990 (1591)
T ss_pred hhcchhHHHHHHHHHHHHHHhccHHHHH-----HHHHHH---HhchHHHHhhHHHHHHHHHHhccChhhHHHHHHHHhcc
Confidence 4555667777878888877776666533 333333 34567899999999999998878899999999999999
Q ss_pred cccCHHHHHHHHhhCCCChhhhHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCC
Q 000076 1742 RKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDES 1795 (2415)
Q Consensus 1742 rk~N~~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~~~ 1795 (2415)
+ +|.||+..|+.. |.....-|..+|..++ ++.+...|+++++.+....++.
T Consensus 991 ~-~n~~vi~f~iel-l~~~~~~dnvi~~~~~-~~~~~t~E~~~ri~q~v~s~~~ 1041 (1591)
T KOG1831|consen 991 G-GNQEVIAFLIEL-LRIAYGGDNVIADEWK-NLFKETKEELFRILQSVESSED 1041 (1591)
T ss_pred C-CChHHHHHHHHH-HHHhccCcchhhhhhh-hhhhhHHHHHHHHHHHHhcccc
Confidence 9 999999999999 9999999999999998 4567888999996666555443
No 7
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=81.61 E-value=4.3 Score=52.46 Aligned_cols=127 Identities=21% Similarity=0.274 Sum_probs=90.8
Q ss_pred HHHHHHHhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhc
Q 000076 1318 AMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQG 1397 (2415)
Q Consensus 1318 Ai~rAIrEII~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTCkEPLr~si~~~Lr~ll~~ 1397 (2415)
.+.-|-.. |.-.--| -||.+-+-+.|.|||-|++.. +-.|.|...+.+=+++.|---||-.||.|-+|-+=+.
T Consensus 241 glq~a~~k-I~GsnaR--CIa~L~afqevi~Dy~TP~~k----tlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~e 313 (556)
T KOG1467|consen 241 GLQYALGK-ISGSNAR--CIAMLQAFQEVIKDYTTPPEK----TLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKNE 313 (556)
T ss_pred HHHHhhcc-cCCccHH--HHHHHHHHHHHHHhccCCCcc----ccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHHH
Confidence 33333333 4444444 499999999999999999977 5567888888888887776689999999999976322
Q ss_pred ---CC---Cc---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhh
Q 000076 1398 ---LT---IA---SELLEQAVQLVTNDNLDLGCAVIEQAATDKAI-----------QTIDGEIAQQLSLRRKHR 1451 (2415)
Q Consensus 1398 ---~~---~~---~~~~E~~i~~~vnDNldLac~iIEKaA~EkAv-----------~eIde~l~~~~~~RR~hr 1451 (2415)
+. ++ ++.+-..|..-+++++.+|-..|-+.|.+|.- .-++..|..+-+.+++.|
T Consensus 314 I~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~fr 387 (556)
T KOG1467|consen 314 ISKLPISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFR 387 (556)
T ss_pred HhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceE
Confidence 22 21 45556678889999999999999999999843 234555655555434333
No 8
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=81.38 E-value=4.5 Score=46.76 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=80.6
Q ss_pred hHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHH---HHhhhcccCCcchHHHHHHHHHhCCh---hHHHHHHHHHHH
Q 000076 973 KISFIINNISALNVEAKAKEFTEILKEQYYPWFAQY---MVMKRASIEPNFHDLYLKFLDKVNSK---ALNREIVQATYE 1046 (2415)
Q Consensus 973 KI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~Y---LV~kRasiEPN~H~LYl~fl~~l~~~---~L~~~Vl~eTy~ 1046 (2415)
||.-++|-+|..|++.-++++.+..... .++...+ ++.++|..+|+|..+|..++..+... .+-..+++.+..
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~-~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~~~ 81 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSD-DPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRCQE 81 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 6778999999999999999999998776 4454444 44678999999999999999998743 556667766666
Q ss_pred HHHHHh-cccccccChHHHHHHHHhhhhhhhhhhhc
Q 000076 1047 NCKVLL-GSELIKSSSEERSLLKNLGSWLGKLTIGR 1081 (2415)
Q Consensus 1047 ~i~~LL-~Se~~~~ss~eRslLKNLGsWLG~iTLar 1081 (2415)
.+.... ..+.......++...+|+.-+||.+....
T Consensus 82 ~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~ 117 (209)
T PF02854_consen 82 EFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFG 117 (209)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhc
Confidence 555411 01222345677888899999999887643
No 9
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=42.07 E-value=1.7e+02 Score=31.12 Aligned_cols=85 Identities=16% Similarity=0.292 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHhhcCCCccchhhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchh
Q 000076 671 AEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHL 750 (2415)
Q Consensus 671 ~ean~yfqkmY~~eisI~~iV~~L~r~K~S~~~rdqdvFaCMih~LFdEYrFF~~YP~~eL~~TAvLFGslI~~~Lv~~~ 750 (2415)
++++...+-.++. -..+|.+..+++++-+ ....++..-+|+..+|+ =..+-..++.|+..+++.++++..
T Consensus 3 k~i~~~l~ey~~~-~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~-------~~~~r~~~~~Ll~~L~~~~~~~~~ 72 (113)
T PF02847_consen 3 KKIFSILMEYFSS-GDVDEAVECLKELKLP--SQHHEVVKVILECALEE-------KKSYREYYSKLLSHLCKRKLISKE 72 (113)
T ss_dssp HHHHHHHHHHHHH-T-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTS-------SHHHHHHHHHHHHHHHHTTSS-HH
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHhcCCCCHH
Confidence 3344444443333 2678888888887666 56678888888888887 355566799999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 000076 751 TLGIALRGVLDALRK 765 (2415)
Q Consensus 751 ~L~iALr~ILeAlrk 765 (2415)
.+.-|+.-+++.+.+
T Consensus 73 ~~~~gf~~~l~~l~D 87 (113)
T PF02847_consen 73 QFQEGFEDLLESLED 87 (113)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhh
Confidence 999998888877754
No 10
>COG5088 SOH1 Rad5p-binding protein [General function prediction only]
Probab=37.99 E-value=68 Score=33.81 Aligned_cols=89 Identities=24% Similarity=0.339 Sum_probs=66.6
Q ss_pred ccHHHHHHHHHHHhhhcchhHhHHHHHhhhcccCCcchHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcccccccChHH
Q 000076 984 LNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEE 1063 (2415)
Q Consensus 984 ~Nl~~K~~Elk~~L~~~y~~WFA~YLV~kRasiEPN~H~LYl~fl~~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ss~e 1063 (2415)
+-+|-.++=+.-+-.+.|..|+++.=.-+ -+|| .-|++.++--.+|+..++|+--|.--|-.||++......-+|
T Consensus 15 sRFE~ELEFvQ~L~Np~Yl~~Ltq~~~fe----se~F-~~YL~YlEYWr~PeYs~fivYP~CL~iL~lLn~~~~~~~vs~ 89 (114)
T COG5088 15 SRFEVELEFVQSLANPQYLTLLTQQQIFE----SENF-KNYLKYLEYWRNPEYSQFIVYPNCLFILKLLNGFMESAIVSE 89 (114)
T ss_pred chhHHHHHHHHHhcCHHHHHHHHHhhhhc----CHHH-HHHHHHHHHhhCCcccceeechhHHHHHHHhcchhHhhhhhh
Confidence 44454444444444678888888754432 2344 569999999999999999988887788889998887777889
Q ss_pred HHHHHHhh-----hhhhhh
Q 000076 1064 RSLLKNLG-----SWLGKL 1077 (2415)
Q Consensus 1064 RslLKNLG-----sWLG~i 1077 (2415)
-.++|.|| -|||+.
T Consensus 90 ~~l~~~l~e~qy~~Wlnk~ 108 (114)
T COG5088 90 DGLLEGLDELQYPQWLNKM 108 (114)
T ss_pred hHHHHhhhHHHHHHHHHHH
Confidence 99999998 488765
No 11
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=27.84 E-value=1.3e+02 Score=30.60 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHhhhhhchHHHHHHHHHHHhhccchhhHHHHhhhcccccCCCCCCCchHHHHHHH
Q 000076 7 TVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVAS 71 (2415)
Q Consensus 7 ~~~~qi~~l~~~~~~~n~~~~~~el~~~~~~g~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ll~~ 71 (2415)
+...+|+.+++.+-+++|+.++..+.+++.-|+.+.- +++.+.+.+--. +.++.+|..++..
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~-Il~~l~~~l~~~--~~~~~~k~~i~~~ 64 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELLVEGYSASD-ILKQLHEVLVES--DIPDSQKAEILKI 64 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHH-HHHHHHHHHHTS--TSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHh--hccHHHHHHHHHH
Confidence 3468899999999999999999999999966999985 888888766433 4556677665543
No 12
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=25.53 E-value=1.1e+02 Score=39.14 Aligned_cols=73 Identities=25% Similarity=0.461 Sum_probs=46.3
Q ss_pred chHhhhcCCCCC--ChHHHHHHHHHHHHhhhhhhcCCCCCchHHHHHHhHHHHHHHHH------------hcchhHHHHH
Q 000076 2070 FMPKLLIGNGQK--GWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLL------------HDFPEFLCDY 2135 (2415)
Q Consensus 2070 Fmp~lL~~~~~~--GW~~~~~LL~~LlkFl~~~l~~~~ls~~i~~lYkGtLRilLVLl------------HDFPEFL~ey 2135 (2415)
|--.|+....|+ -|..+..+|-+++++.+||-- ..++|+||..+-... +|||+||-.
T Consensus 113 f~~dL~~G~~qkhP~l~~v~~~l~~~lr~fGpF~s--------~~IikSTLdFv~g~~iEq~nf~~~p~A~~fP~ylR~- 183 (357)
T cd00686 113 YFDDLQAGREQAHPWWALVNEHFPNVLRHFGPFCS--------LNLIRSTLDFFEGCWIEQYNFGGFPGSHDYPQFLRR- 183 (357)
T ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHhhhccCCCCCCcccchHHHh-
Confidence 333444433332 377777788888888888854 668899998865442 488888743
Q ss_pred hHhhhccCCCCccccccceecccCCC
Q 000076 2136 HFTFCDVIPPSCIQMRNIILSAFPRN 2161 (2415)
Q Consensus 2136 h~~lcd~IP~~CiQLRNlILSAfP~~ 2161 (2415)
-+-++.- .-.+.||+.
T Consensus 184 ----ksGl~E~------yA~FiFPk~ 199 (357)
T cd00686 184 ----MNGLGHC------VGASLWPKE 199 (357)
T ss_pred ----ccCCcce------eEEEecchh
Confidence 3334432 356778875
Done!