Query 000076
Match_columns 2415
No_of_seqs 205 out of 286
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 13:16:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000076.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000076hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hu3a_ a.118.1.14 (A:) Eukary 79.3 1.4 0.0001 48.4 7.7 185 968-1160 9-234 (243)
2 d1uw4b_ a.118.1.14 (B:) Regula 73.8 1.5 0.00011 48.8 5.9 189 968-1167 5-220 (248)
3 d1ug3a1 a.118.1.14 (A:1235-142 39.8 45 0.0033 35.0 9.8 89 667-765 7-95 (193)
4 d1h2vc1 a.118.1.14 (C:29-290) 25.9 82 0.006 34.5 9.3 100 972-1078 1-107 (262)
5 d1iqpa1 a.80.1.1 (A:233-327) R 24.9 49 0.0035 30.7 6.1 62 8-72 3-65 (95)
6 d1paqa_ a.118.1.14 (A:) Transl 21.2 1.3E+02 0.0097 30.3 9.2 95 669-763 2-100 (161)
7 d1sxjd1 a.80.1.1 (D:263-353) R 20.2 44 0.0032 30.6 4.7 59 10-70 4-62 (91)
8 d1ujka_ a.118.9.2 (A:) ADP-rib 17.3 4.4E+02 0.032 25.7 12.7 37 1875-1915 109-145 (145)
9 d2nsza1 a.118.1.14 (A:322-450) 17.1 2.2E+02 0.016 27.6 9.4 89 668-765 5-93 (129)
10 d1sxjc1 a.80.1.1 (C:239-333) R 15.8 1E+02 0.0074 28.3 6.1 45 8-53 2-47 (95)
No 1
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.30 E-value=1.4 Score=48.44 Aligned_cols=185 Identities=11% Similarity=0.118 Sum_probs=111.6
Q ss_pred hhhhHhHhhhhhcCCcccHHHHHHHHHHHhh--hcchhHhHHHHHhhhcccCCcchHHHHHHHHHhCChh----------
Q 000076 968 SEVQDKISFIINNISALNVEAKAKEFTEILK--EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKA---------- 1035 (2415)
Q Consensus 968 e~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~--~~y~~WFA~YLV~kRasiEPN~H~LYl~fl~~l~~~~---------- 1035 (2415)
+++..+|.-++|-||++|++.=.+|+.++-. ++-..=+++ +|.++|-.||+|=.+|.++...+....
T Consensus 9 ~~l~r~v~~lLNKLt~~n~~~i~~ei~~l~~~~~~~l~~~v~-~I~~kai~e~~f~~~YA~Lc~~l~~~~~~~~~~~~~~ 87 (243)
T d1hu3a_ 9 QELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVID-LVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNT 87 (243)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHH-HHHHHHHHCGGGHHHHHHHHHHHTTCCCC--------
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHcCccccHHHHHHHHHHHHhcCccccccccc
Confidence 4667799999999999999999999987632 222222333 356779999999999999999987642
Q ss_pred --HHHHHHHHHHHHHHHHhcc-------------------------cccccChHHHHHHHHhhhhhhhhhhhcCcccccC
Q 000076 1036 --LNREIVQATYENCKVLLGS-------------------------ELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAR 1088 (2415)
Q Consensus 1036 --L~~~Vl~eTy~~i~~LL~S-------------------------e~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k 1088 (2415)
+.+.+++.....-...... |........|....|+..++|.+..-+=-+.+.=
T Consensus 88 ~~F~~~Ll~~~q~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~figeLy~~~~v~~~~i 167 (243)
T d1hu3a_ 88 VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIM 167 (243)
T ss_dssp -CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHccccchHHHH
Confidence 3444444433322222111 0011112234555577788888775432222111
Q ss_pred CCChhhHHHHHHhcCceEEEechhhhcccccCCCccccCCCccH--HHHHHHHHHHhcCCcccchhHHHHHHHH
Q 000076 1089 EIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWT--MAILGLLAEIYSMPNLKMNLKFDIEVLF 1160 (2415)
Q Consensus 1089 ~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~~~~S~vFkPPNPWt--m~IL~lL~Ely~~~~LKlnLKFEIEVL~ 1160 (2415)
.--++.|+ +.... --|-.+|.+|..|... +.-++|+. =.++.-|.++-..+++.--+||=|+-|.
T Consensus 168 ~~~l~~Ll-~~~~e----~~ie~l~~lL~~~G~~--L~~~~~~~~~~~~~~~l~~~~~~~~~s~Rirfml~~l~ 234 (243)
T d1hu3a_ 168 HDCVVKLL-KNHDE----ESLECLCRLLTTIGKD--LDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVI 234 (243)
T ss_dssp HHHHHHHH-HSCSH----HHHHHHHHHHHHHHHH--HCCTTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCCH----HHHHHHHHHHHHHHHH--HhccccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 11223332 22111 1255778888888754 34355553 3678888888888888888888887665
No 2
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.80 E-value=1.5 Score=48.84 Aligned_cols=189 Identities=12% Similarity=0.082 Sum_probs=122.8
Q ss_pred hhhhHhHhhhhhcCCcccHHHHHHHHHHHh--hhcchhHhHHHHHhhhcccCCcchHHHHHHHHHhC--ChhHHHHHHHH
Q 000076 968 SEVQDKISFIINNISALNVEAKAKEFTEIL--KEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVN--SKALNREIVQA 1043 (2415)
Q Consensus 968 e~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L--~~~y~~WFA~YLV~kRasiEPN~H~LYl~fl~~l~--~~~L~~~Vl~e 1043 (2415)
++.--|+ |+|.||+.|++.=+++++++= +++-..++...++. -+..+++|=.+|..++..|. .+++-..++..
T Consensus 5 ~~flr~l--i~n~Ls~~n~~~i~~~i~kl~~~n~e~~~~li~~i~~-~~~~~~~~i~~yA~l~a~L~~~~~~f~~~~id~ 81 (248)
T d1uw4b_ 5 QEYVRKL--LYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMIN-IWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDG 81 (248)
T ss_dssp HHHHHHH--HHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHHHHC-GGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHH--HHhhCCHhHHHHHHHHHHHCCCCCHHHHHHHHHHHhh-hhcCchhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4444554 689999999999888887763 24556778886664 59999999999999999995 45677777888
Q ss_pred HHHHHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcccccCCCChhhHHHHHHhcCceE---------EEechhhh
Q 000076 1044 TYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMI---------AVIPFTSK 1114 (2415)
Q Consensus 1044 Ty~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LL~eaY~~g~L~---------~VIPFV~K 1114 (2415)
+.+.++.-+..++. .++...-+.-.++|-+..-+=-+...-.=-+..||-.+++.+.-. .-|=.+|+
T Consensus 82 l~e~f~~~~e~~~~----~~~~r~~~~v~figeLy~~~~v~~~~i~~~l~~Ll~~~~~~~~~~~~~d~~~d~~rIe~l~~ 157 (248)
T d1uw4b_ 82 VLEDIRLGMEVNQP----KFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCT 157 (248)
T ss_dssp HHHHHHHHHHHCCG----GGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCTTSCCCSSSCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCcccccccCCCCcchhHHHHHHH
Confidence 88888777764422 233333344589999886655544443334556665566654210 11557999
Q ss_pred cccccCCCccccCCCccHHHHHH-HHH-------------HHhcCCcccchhHHHHHHHHhhcCCCc
Q 000076 1115 ILEPCQSSLAYQPPNPWTMAILG-LLA-------------EIYSMPNLKMNLKFDIEVLFKNLGVDM 1167 (2415)
Q Consensus 1115 VLe~~~~S~vFkPPNPWtm~IL~-lL~-------------Ely~~~~LKlnLKFEIEVL~K~L~ld~ 1167 (2415)
+|+.|..+- .+++...-+. .+. ++-+...+-.-++|-|+-|+.-.+=++
T Consensus 158 lL~t~G~~l----~~~~~~~~l~~~~~~fq~y~~~~~~~~~~~~~~~lp~ri~f~i~dll~lr~~~w 220 (248)
T d1uw4b_ 158 ILDTCGQYF----DRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKI 220 (248)
T ss_dssp HHHHHGGGC----SSHHHHHHHHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhHHh----cCccchhhHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhCCC
Confidence 999998773 2333322221 111 111234566778999999998776444
No 3
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.78 E-value=45 Score=35.05 Aligned_cols=89 Identities=8% Similarity=0.098 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHhhcCCCccchhhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhc
Q 000076 667 DDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQL 746 (2415)
Q Consensus 667 ~diE~ean~yfqkmY~~eisI~~iV~~L~r~K~S~~~rdqdvFaCMih~LFdEYrFF~~YP~~eL~~TAvLFGslI~~~L 746 (2415)
+|+++++++..+.+|+.. .++|.+..++.++.. .-+ .++-.++|..-+| .-+++-..++.|+..|++.++
T Consensus 7 ee~~kk~~~il~Ey~~~~-D~~Ea~~~l~el~~p-~~~-~~~V~~~i~~~le-------~~~~~re~~~~Ll~~L~~~~~ 76 (193)
T d1ug3a1 7 EELEKKSKAIIEEYLHLN-DMKEAVQCVQELASP-SLL-FIFVRHGVESTLE-------RSAIAREHMGQLLHQLLCAGH 76 (193)
T ss_dssp HHHHHHHHHHHHHHHHHC-CHHHHHHHHHTTCCG-GGH-HHHHHHHHHHHTT-------TCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCc-hhH-HHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHCCC
Confidence 578888888888888753 679999999888633 223 3444444444444 235566679999999999999
Q ss_pred cchhHHHHHHHHHHHHhcC
Q 000076 747 VTHLTLGIALRGVLDALRK 765 (2415)
Q Consensus 747 v~~~~L~iALr~ILeAlrk 765 (2415)
|+.-.+.-|+.-+++.+.+
T Consensus 77 is~~~~~~gf~~~l~~l~D 95 (193)
T d1ug3a1 77 LSTAQYYQGLYEILELAED 95 (193)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhh
Confidence 9999999999999888765
No 4
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.88 E-value=82 Score=34.50 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=74.3
Q ss_pred HhHhhhhhcCCc---ccHHHHHHHHHHHhhhcchh--HhHHHHHhhhcccCCcchHHHHHHHHHhCC--hhHHHHHHHHH
Q 000076 972 DKISFIINNISA---LNVEAKAKEFTEILKEQYYP--WFAQYMVMKRASIEPNFHDLYLKFLDKVNS--KALNREIVQAT 1044 (2415)
Q Consensus 972 DKI~FIiNNlS~---~Nl~~K~~Elk~~L~~~y~~--WFA~YLV~kRasiEPN~H~LYl~fl~~l~~--~~L~~~Vl~eT 1044 (2415)
||+-.+||-|++ .++++.++++.+.+.++.-. .---=.+++-+...|.+-.+|..++--+|. +++=+++++.+
T Consensus 1 drl~~LI~rige~~~~s~~~~ie~L~~~l~~~l~~~~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~ 80 (262)
T d1h2vc1 1 DHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAM 80 (262)
T ss_dssp CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence 567777887754 56677788888777765322 222224567788899999999999887774 46889999999
Q ss_pred HHHHHHHhcccccccChHHHHHHHHhhhhhhhhh
Q 000076 1045 YENCKVLLGSELIKSSSEERSLLKNLGSWLGKLT 1078 (2415)
Q Consensus 1045 y~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iT 1078 (2415)
.++.+..+++. +..-.||+-.+||.+.
T Consensus 81 ~~~f~~~l~~~-------~~~~~~~llrFla~L~ 107 (262)
T d1h2vc1 81 IRQLKESLKAN-------NYNEAVYLVRFLSDLV 107 (262)
T ss_dssp HHHHHHHHHTT-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-------CHHHHHHHHHHHHHHc
Confidence 99999888853 4566888888888874
No 5
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=24.93 E-value=49 Score=30.69 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=47.2
Q ss_pred cHHHHHHHHHhhhhhchHHHHHHHHHHH-hhccchhhHHHHhhhcccccCCCCCCCchHHHHHHHH
Q 000076 8 VPSQIRFLLQSLNEANADSVFRELCQFI-EYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASV 72 (2415)
Q Consensus 8 ~~~qi~~l~~~~~~~n~~~~~~el~~~~-~~g~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ll~~~ 72 (2415)
-+..|+.+++.+.++||+.....+.+++ ++|+.+.- ++..+.+.+- ..+..+..|..++...
T Consensus 3 ~P~~I~~il~~~l~~~f~~a~~~l~~l~~~~G~s~~d-Il~~l~~~v~--~~~~~~~~k~~ll~~l 65 (95)
T d1iqpa1 3 RPEDIREMMLLALKGNFLKAREKLREILLKQGLSGED-VLVQMHKEVF--NLPIEEPKKVLLADKI 65 (95)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHGG--GSSSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHh--hcCCCHHHHHHHHHHH
Confidence 4678999999999999999999999985 79999985 7777766552 2235566676665543
No 6
>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.21 E-value=1.3e+02 Score=30.25 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHhhcCCCccchhhHHHHHHhhhhhhccCC----CCcHHHHHHHHHHHHHhhhh
Q 000076 669 IEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFP----KYPERQLRIAAVLFGSIIKH 744 (2415)
Q Consensus 669 iE~ean~yfqkmY~~eisI~~iV~~L~r~K~S~~~rdqdvFaCMih~LFdEYrFF~----~YP~~eL~~TAvLFGslI~~ 744 (2415)
-.+|+-.-++|-+....++|.++-.|+-+|-|-|--+.||=.|++..+.+--.-++ .=+.++++..=.=||.+++.
T Consensus 2 F~~Ev~~sl~r~~ee~~~~dn~iLElnslr~a~N~~~~dv~~av~~All~~i~~~~~~~~~~~~~~~~~~l~k~~~ll~~ 81 (161)
T d1paqa_ 2 FEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLFKR 81 (161)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGGGGG
T ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999998888888876432221 11223333322335666666
Q ss_pred hccchhHHHHHHHHHHHHh
Q 000076 745 QLVTHLTLGIALRGVLDAL 763 (2415)
Q Consensus 745 ~Lv~~~~L~iALr~ILeAl 763 (2415)
-+-+.-...-+|..|.+.+
T Consensus 82 ~~~~~~~q~~~L~~lq~~c 100 (161)
T d1paqa_ 82 QAFDEEEYIDLMNIIMEKI 100 (161)
T ss_dssp TCCSHHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHH
Confidence 5544434334455555555
No 7
>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.19 E-value=44 Score=30.65 Aligned_cols=59 Identities=5% Similarity=0.130 Sum_probs=45.2
Q ss_pred HHHHHHHHhhhhhchHHHHHHHHHHHhhccchhhHHHHhhhcccccCCCCCCCchHHHHHH
Q 000076 10 SQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVA 70 (2415)
Q Consensus 10 ~qi~~l~~~~~~~n~~~~~~el~~~~~~g~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ll~ 70 (2415)
..|..++..+.++||+.....+..++..|..+.- ++..+.+.+-.. .+..+.+|..++.
T Consensus 4 ~~i~~il~~~~~~~f~~a~~~i~~l~~~Gys~~d-Il~~l~~~vv~~-~~i~~~~k~~i~~ 62 (91)
T d1sxjd1 4 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAAS-VVNQLHEYYITN-DNFDTNFKNQISW 62 (91)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTT-HHHHHHHHHHHC-SSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHhc-CCCCHHHHHHHHH
Confidence 4688999999999999999999999988999984 777777664322 2355666665554
No 8
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.29 E-value=4.4e+02 Score=25.73 Aligned_cols=37 Identities=16% Similarity=0.314 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHcCccc
Q 000076 1875 GFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLK 1915 (2415)
Q Consensus 1875 ~~~eq~~~lF~EWv~l~~~~~~~d~~~~~Fi~qL~~~giL~ 1915 (2415)
..++++-.++.+|-.-+ | ++..+..-..+|..+||++
T Consensus 109 ~Vk~kil~li~~W~~~f--p--~~~~~~~~Y~~L~~~Gii~ 145 (145)
T d1ujka_ 109 KVKNKILELLYSWTVGL--P--EEVKIAEAYQMLKKQGIVK 145 (145)
T ss_dssp HHHHHHHHHHHHHHHHC--T--TCHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHC--C--CchHHHHHHHHHHHCCCcC
Confidence 56899999999998755 3 4677778888999999975
No 9
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.11 E-value=2.2e+02 Score=27.58 Aligned_cols=89 Identities=12% Similarity=0.172 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHhhcCCCccchhhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhcc
Q 000076 668 DIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLV 747 (2415)
Q Consensus 668 diE~ean~yfqkmY~~eisI~~iV~~L~r~K~S~~~rdqdvFaCMih~LFdEYrFF~~YP~~eL~~TAvLFGslI~~~Lv 747 (2415)
...+++++..+.+++. -.++|.+.-++.++ ++.-+..=|...+.++| |. =+.+.-..++.||..|...++|
T Consensus 5 ~l~kk~~~ll~EY~~~-~D~~Ea~~~l~eL~-~p~~~~e~V~~~i~~al-e~------~~~~r~~~~~~Ll~~L~~~~~i 75 (129)
T d2nsza1 5 HLVKEIDMLLKEYLLS-GDISEAEHCLKELE-VPHFHHELVYEAIVMVL-ES------TGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHHHHH-CCHHHHHHHHHHHT-CGGGHHHHHHHHHHHHH-HC------CSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHhC-CCHHHHHHHHHHcC-CchhhHHHHHHHHHHHH-hc------CCHHHHHHHHHHHHHHHHCCCC
Confidence 3455666655555553 34788888888886 34334333455555555 32 1333345689999999999999
Q ss_pred chhHHHHHHHHHHHHhcC
Q 000076 748 THLTLGIALRGVLDALRK 765 (2415)
Q Consensus 748 ~~~~L~iALr~ILeAlrk 765 (2415)
+.-.+..|+..+++.+.+
T Consensus 76 s~~~i~~Gf~~~l~~l~D 93 (129)
T d2nsza1 76 TIDQMKRGYERIYNEIPD 93 (129)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcH
Confidence 999999999999987754
No 10
>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.82 E-value=1e+02 Score=28.32 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=39.1
Q ss_pred cHHHHHHHHHhhhhhchHHHHHHHHHHH-hhccchhhHHHHhhhccc
Q 000076 8 VPSQIRFLLQSLNEANADSVFRELCQFI-EYGIEGSTMMLQTCMDHL 53 (2415)
Q Consensus 8 ~~~qi~~l~~~~~~~n~~~~~~el~~~~-~~g~~~~~~~l~~~~~~~ 53 (2415)
.+..|..+++.+.+++|+..+..+.+++ ++|+.+.- +++.+.+.+
T Consensus 2 ~P~~I~~il~~~l~~~f~~a~~~l~~l~~~~G~s~~d-Il~~l~~~i 47 (95)
T d1sxjc1 2 RPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALID-LIEGIVKIL 47 (95)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 4678999999999999999999999986 79999985 778877755
Done!