Query 000078
Match_columns 2405
No_of_seqs 213 out of 285
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 17:00:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5103 CDC39 Cell division co 100.0 1E-289 3E-294 2638.4 107.4 1906 6-2392 25-1991(2005)
2 KOG1831 Negative regulator of 100.0 1E-284 3E-289 2660.4 95.1 1454 532-2393 82-1578(1591)
3 PF04054 Not1: CCR4-Not comple 100.0 4E-115 9E-120 1068.6 30.8 366 2009-2384 1-379 (379)
4 PF12842 DUF3819: Domain of un 100.0 2.5E-46 5.5E-51 406.9 17.5 145 1292-1436 1-147 (147)
5 KOG1831 Negative regulator of 93.2 0.31 6.7E-06 68.1 9.9 122 1646-1778 919-1040(1591)
6 smart00543 MIF4G Middle domain 90.1 2.5 5.4E-05 48.8 11.9 105 972-1082 2-111 (200)
7 KOG1467 Translation initiation 82.3 3.9 8.6E-05 52.8 8.4 128 1301-1435 240-387 (556)
8 PF02854 MIF4G: MIF4G domain; 80.2 5.4 0.00012 46.1 8.2 108 973-1081 3-117 (209)
9 PF02847 MA3: MA3 domain; Int 38.6 2E+02 0.0043 30.5 9.7 71 686-765 17-87 (113)
10 COG5088 SOH1 Rad5p-binding pro 36.2 77 0.0017 33.4 5.6 89 984-1077 15-108 (114)
11 KOG3091 Nuclear pore complex, 28.9 3E+02 0.0066 36.8 10.5 27 1331-1357 404-430 (508)
12 cd00686 Terpene_cyclase_cis_tr 27.6 97 0.0021 39.6 5.7 61 2072-2151 127-199 (357)
13 PF08542 Rep_fac_C: Replicatio 27.2 1.2E+02 0.0025 31.0 5.5 62 7-71 3-64 (89)
14 smart00544 MA3 Domain in DAP-5 21.1 4.3E+02 0.0093 28.1 8.5 71 686-765 17-87 (113)
No 1
>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
Probab=100.00 E-value=1.2e-289 Score=2638.37 Aligned_cols=1906 Identities=26% Similarity=0.404 Sum_probs=1478.8
Q ss_pred CCcHHHHHHHHHhhhhhchHHHHHHHHHHHh-hccchhhHHHhhhhccc--ccCCCCCCCch---HHHHHHHHHHHhhcC
Q 000078 6 STVPSQIRFLLQSLNEANADSVFRELCQFIE-YGIEGSTMMLQTCMDHL--NLHGTGLKNPQ---LESVVASVFKYIMDK 79 (2405)
Q Consensus 6 ~~~~~qi~~l~~~~~~~n~~~~~~e~~~~~~-~g~~~~~~~l~~~~~~~--~~~~~~~k~~~---~~~ll~~~~~~~~~k 79 (2405)
+.+-+||.+|++.|++.||++.-+||.|+++ ..++--+|++|.++-.- +.-| .||... --.+|-+|++.++.|
T Consensus 25 sIV~AQI~fLlsTL~eDqydt~~eqIRqlinkna~~vY~~~~rRLiq~nS~~If~-tGK~~~~~a~~~~LL~Elks~~~K 103 (2005)
T COG5103 25 SIVKAQILFLLSTLREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQGNSYRIFG-TGKSSDGLATYKLLLDELKSLTKK 103 (2005)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHccCCcHHHHHHHHHHhcccchhhhc-cCcccchhHHHHHHHHHHHhhhhh
Confidence 4577999999999999999999999999997 99999999999999533 3222 244333 457888999999987
Q ss_pred CCccchhhhhccCcccCHHHHHHHHhhcCCCchhHHHHhhhhccCCChHHHHHHHHHHHHHHHHHhcC----CCC--CCC
Q 000078 80 PNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCAN----PVP--MNS 153 (2405)
Q Consensus 80 p~f~t~~c~A~~~~~~~~~~l~~l~~~L~ls~~q~v~~~laL~~s~~~~~~~~~~~f~~~~~~~l~~~----~~~--~~~ 153 (2405)
-. ..|+.+.. ++-|+++ ++ |..+||.++ .++...-.+. | |++ +..
T Consensus 104 r~-----sD~Is~~d--sevFed~----~F----Q~siGlT~S-------------Ll~n~Fqs~~-Nq~~~~t~qqS~d 154 (2005)
T COG5103 104 RF-----SDAISGSD--SEVFEDF----HF----QFSIGLTTS-------------LLKNTFQSLL-NQLSDPTQQQSID 154 (2005)
T ss_pred hh-----hhHhhcch--hhhhcch----hh----hhhhhhhHH-------------HHHHHHHHHH-hhccchHhhhhcc
Confidence 54 66776642 2223333 11 111444443 1222222211 2 111 110
Q ss_pred HHHHHHHHHHHhcccchhH-hHHHHHHHHHhhcCCCCCCccccCCcCCcccccccccccccccCCCCcchHHHHHHhhcc
Q 000078 154 AEQIQNIIMFLQRSSDLSK-HVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKE 232 (2405)
Q Consensus 154 ~~~l~~il~~l~~~~~l~~-~~~~f~~~l~~~~~~~~~~~~l~Pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (2405)
-+-+ -.|++ |-.. ...-|.+.+.-.--+. .|+ .. +.+.++.+- +.
T Consensus 155 ~NDl----d~lr~--~~Tdydr~~f~q~i~~~Le~s------~~~-------------~~-~~~p~e~~~-~~------- 200 (2005)
T COG5103 155 KNDL----DLLRE--GTTDYDRKIFRQEIKDVLEKS------DPL-------------TA-LFGPREVDR-SF------- 200 (2005)
T ss_pred cchH----HHHhc--CCchHHHHHHHHHhHHHHHcC------Cch-------------hh-hcCcchhhH-HH-------
Confidence 0000 00111 2110 0111222111110000 001 00 000011000 01
Q ss_pred CcHHHHHHhhCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccCCccCccchhhHhhhccCCCCCCCCCCCCCCH
Q 000078 233 MSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNV 312 (2405)
Q Consensus 233 ~sl~~~i~elG~~~t~s~~~c~~~L~~~~~l~~~~va~vlg~ma~t~sgl~d~~~~~~~~~~~~g~~~~~~~~~~~~Wn~ 312 (2405)
|++. ..++|+-.+.-++.|||+.+-.|+.- ++.+.||.
T Consensus 201 --l~~~--------------l~~Il~P~~~~~~~dvar~il~~~~~--------------------------~D~~~w~~ 238 (2005)
T COG5103 201 --LDDA--------------LQRILRPRREVVPEDVARAILFMADF--------------------------PDRGEWNL 238 (2005)
T ss_pred --HHHH--------------HHHHhCCCccCCcchHHHHHhhhhhc--------------------------ccccccch
Confidence 1111 23445544468889999985444422 22467999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHhcCCCCCCCCChhhHHHHHHHHhh-hcCCCccccccccCcccCchh-hHHHHHHHhhCC
Q 000078 313 DVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKY-ACQEPFPLHAVCGSVWKNTEG-QLSFLRYAVASP 390 (2405)
Q Consensus 313 ~v~v~alk~~~p~lnW~~Vi~~lD~~~f~i~d~~~l~ll~~~~~~-~~~~~Fpi~~l~~~~W~N~~~-Qlsfl~~~l~~p 390 (2405)
-..+.+++..+..+||.+|..+||.+.|.|+....+..++.+|-. +.+.+||.+.+|. .|||... ||++.-|..+.+
T Consensus 239 v~~~~a~~s~~e~iNW~~v~s~f~~~~F~i~~l~p~~v~~~c~f~~~~~~~v~~eff~~-~Wkn~~~~~l~i~lhi~s~~ 317 (2005)
T COG5103 239 VAIVGAMKSNLEEINWRDVYSCFLDVNFSIWTLEPLYVIIDCWFYISGIITVPYEFFFK-RWKNERAQILFIRLHIESDE 317 (2005)
T ss_pred HHHHHHHHhhhhhcCHHHHHHHhcCcceeeccCcchHHHHHHHHHHhcCCCccHHHHHH-HhcchhhhhHhhheeeeecc
Confidence 999999999999999999999999999999977666666555554 4567899999995 9999999 566666667777
Q ss_pred CcccccCc-CccccccccCCCCccccc-cccccccchHHHHHHHHHhhhcCchHHHHHHhhhhhhcChhHHHHHhhcc--
Q 000078 391 PEVFTFAH-SARQLPYVDAVPGLKLQS-GQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHI-- 466 (2405)
Q Consensus 391 ~~~f~f~~-~~~~~v~~d~~~~~~~~~-~~~~~~W~sldLie~L~~Lae~~~~~~v~~l~~~p~~~~pe~lllgl~~i-- 466 (2405)
...|+... .+.+.|..+...+.+... -...+++||.+|++++. +++.....-..++| ....||.+.+||..+
T Consensus 318 ~~~fd~~Nv~~tr~Vs~~~~~~~~~~ny~~~~snlNc~el~Q~~~-l~~~p~i~y~~~lF---lN~~pE~~~a~L~~~~~ 393 (2005)
T COG5103 318 KRTFDYSNVFFTRIVSIEDSRGHRFKNYMGYESNLNCVELFQCIM-LGSLPLIEYIARLF---LNKSPEWCAAGLGFVQP 393 (2005)
T ss_pred cchheecccceeEEEeeecCchHHHHHHHHHhcccCHHHHHHHHH-hccchHHHHHHHHH---hccCHHHHHHHHHHhhh
Confidence 77788754 344555544433333222 24789999999999994 44332222233466 789999999999754
Q ss_pred ---CcchhHHHHHHHHhhhHHHHcC-CCchHHHHHHHhhCChhHHHHHHHhhhcCCccHHHHHHHHHHhhhHHHHhhcCC
Q 000078 467 ---NTAYNLIQYEVSFAVFPMIIKS-TMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIP 542 (2405)
Q Consensus 467 ---~~~~~~l~~ell~~lf~~fl~~-~~~~~vi~~lW~~~~~~~~~~l~d~y~~d~~~l~rIldvaqelk~L~~ll~~~p 542 (2405)
+-.||+.+.+.+...+-+++.| .++++|+..+...+|+++++...-...+|...++|++|+.-|+|.|+.+.|..|
T Consensus 394 ~f~~L~~N~v~~s~if~~ll~~f~n~~p~sFvfv~~~rT~p~~~~~~~r~v~~kd~~pv~~~l~~~le~~~l~~V~n~lP 473 (2005)
T COG5103 394 KFSPLAWNPVQESRIFEELLMGFANGAPNSFVFVVLFRTHPEMMLQKSRLVLAKDGIPVSRLLDIFLEHKMLPLVSNLLP 473 (2005)
T ss_pred hhhhhhcCchHHHHHHHHHHHHHhcCCCCceEEEEEEecCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCchhhhhhcCC
Confidence 4479999999888877777755 588999999999999999999987779999999999999999999999999999
Q ss_pred chhHHHHHHHhhcccccCHHHHHHHHhhcCcc-h----HHHHHHHHHHHHhhcccccccCCCCCCCcccccccchhHHHH
Q 000078 543 SPFAIRLAVIASQKELVDLEKWLSINLSTYKD-V----FFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVI 617 (2405)
Q Consensus 543 ~~f~idLA~lAsrre~l~lekWL~~~l~~~~~-~----f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~etv~~l 617 (2405)
..|++|+++|++.|+.++|..|+..++....+ + |+...++||+.|+.......+.+ ..+-+ ++..|+-.+
T Consensus 474 ~~f~~~i~vL~~aR~~l~~~~Wl~~~~~~~~dad~~NVfvv~~~~~l~sk~s~~k~p~~q~---ee~~~--f~~~tviei 548 (2005)
T COG5103 474 PEFCFDIIVLSSARDHLNLGIWLSNNLTTRKDADGLNVFVVSLVQYLDSKVSKHKEPEKQK---EESVM--FPLNTVIEI 548 (2005)
T ss_pred HHHHHHHHHHHHHHHhcchhhhcccCceeeecCCcccchHHHHHHHHHHHHhhcCChhhhc---cccee--eehhhHHHH
Confidence 99999999999999999999999999987665 3 99999999999997543211111 11222 344566555
Q ss_pred HHHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCCC-CCC-----CCCCCChhhHHHHHHHHHHHHhccCCCHHHHH
Q 000078 618 LKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEA-ADS-----STSEGYADDIEAEANSYFHQMFSGQLTIEAMV 691 (2405)
Q Consensus 618 l~~L~~~~~~~~s~~l~e~l~~v~~~~i~~~PRL~n~~~-~d~-----~~~~~f~~dIE~Ean~yfqkmYs~eisI~eiv 691 (2405)
|..+...... -.+.++.++..|++.||||++.+- +|+ .+.++++.|||+||.+|||+||+++++|+++|
T Consensus 549 l~t~~~~V~q-----~~~~~k~~~~~~l~~fprli~~G~~~Ds~v~at~tt~s~~~dIE~E~~sy~q~~y~~~~~I~~~I 623 (2005)
T COG5103 549 LGTFTKAVEQ-----YIRILKPETVVVLNEFPRLIPHGLRRDSIVAATNTTRSKEIDIEEEASSYIQQIYNSQRGIESSI 623 (2005)
T ss_pred HHHhHHHHHH-----HHHhcCcceEehHhhhhhhccCCCCcchhhhccCcccccCccHHHHHHHHHHHHHHhcccHHHHH
Confidence 5554332221 156778888899999999999874 444 35678999999999999999999999999999
Q ss_pred HHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCCCCCcc
Q 000078 692 QMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKM 771 (2405)
Q Consensus 692 ~~L~r~K~S~~~rdqdvFaCMIh~LFdEYrFF~~YP~~eL~iTAvLFG~lI~~~Lv~~~~L~iALr~ILeAlrkp~~SkM 771 (2405)
+.||+|++|++|||+|+|+|+-|.|||||+||++||+++|++|||||||||+++|+++.+|++|+|||..++++|++|||
T Consensus 624 ~~l~~f~~senprd~elfsci~hal~~ey~ff~dyPl~ALaltavLfGslI~f~ll~~~~L~vA~ryI~~~lk~P~~skm 703 (2005)
T COG5103 624 NQLKEFLRSENPRDKELFSCIFHALLEEYGFFYDYPLSALALTAVLFGSLIKFRLLPKPYLRVAIRYIKGSLKHPENSKM 703 (2005)
T ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCcc
Q 000078 772 FVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVS 851 (2405)
Q Consensus 772 f~FGiqAL~qF~~RL~EwPqyC~~LlqIp~L~~~~p~l~~~ie~~l~~~~~~~~~~~~~~~~~~~q~~~~q~~~~~~~~~ 851 (2405)
|+||+|||++|+.||++||+||+.++.||.|+. .|++|+.|-.+.. ..+. .+
T Consensus 704 f~Fg~qal~~Fq~kLp~Yp~yc~~vl~ip~l~~-r~~iy~sivem~s----~eNt-------~~---------------- 755 (2005)
T COG5103 704 FSFGFQALEVFQEKLPSYPSYCSEVLEIPTLNN-RILIYKSIVEMDS----NENT-------EV---------------- 755 (2005)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhccccccc-chHHHHHHHHHHh----ccCC-------cc----------------
Confidence 999999999999999999999999999999965 8999998855542 1100 00
Q ss_pred CCcccccccchhhhHHhhhcccccccccccccccccCCCCCccccCCCCCcccCCCCCchhhhhcccCCCccccccCCCc
Q 000078 852 GSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGF 931 (2405)
Q Consensus 852 ~~~~~~~~~~~~~~~~~qq~~~g~l~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 931 (2405)
|+ +++.+|. ++.- .|
T Consensus 756 --------------------------Ek-------a~p~~pm---~pl~-----------------------------~f 770 (2005)
T COG5103 756 --------------------------EK-------ANPTHPM---LPLE-----------------------------DF 770 (2005)
T ss_pred --------------------------cc-------cCCCCcc---cchh-----------------------------hh
Confidence 00 0111111 1000 00
Q ss_pred cCCCCCccccccccccchHHHHHHhhhcCCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHHh
Q 000078 932 ARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVM 1011 (2405)
Q Consensus 932 ~~p~~~~~~~~~~~~~ni~tL~~a~e~~~~~~e~Ppe~vqDKI~FIiNNlS~~Nle~K~~Elke~L~e~y~~WFA~YLV~ 1011 (2405)
++- -+ +-+...|--++|+..+|+|.+||++..|+..|++|+|+.|+|.|.+||+.|||.
T Consensus 771 v~~-------~v--------------~c~~n~Eg~~~evV~~iLFaiNNl~~ln~n~ki~~lk~~Ltp~y~~wfs~y~vt 829 (2005)
T COG5103 771 VRL-------IV--------------KCDANNEGRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVGWFSIYMVT 829 (2005)
T ss_pred hee-------Ee--------------ccccCccccHHHHHHHHHHHhhhHHhhhccchHHHHHHhcCcccccceeeEEEE
Confidence 000 00 001123445677888899999999999999999999999999999999999999
Q ss_pred hhcccCCchhHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhcccccccChHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 000078 1012 KRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREID 1091 (2405)
Q Consensus 1012 kRAsiEPNfH~LYl~fLd~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ssseRslLKNLGsWLG~iTLarNkPI~~k~id 1091 (2405)
+|++.|||||+||.++++.++++.||+.+.+.|.+.++.||+.... +.+|+++|||||+|||+|||||||||+|+++|
T Consensus 830 qR~~~e~n~~~ly~kvve~lgS~dly~~~~r~TL~~l~~ll~~~~e--s~~ekk~lKnLgswLG~ItLa~NkpIt~~q~~ 907 (2005)
T COG5103 830 QRSTAEENCRRLYGKVVERLGSKDLYLRFSRKTLEFLKMLLDYRCE--SPSEKKVLKNLGSWLGRITLAKNKPITSEQFD 907 (2005)
T ss_pred eeccccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhcccc--ChHHHHHHHHHHHHHhHHHHhhcCcccccccc
Confidence 9999999999999999999999999999999999999999987644 88999999999999999999999999999999
Q ss_pred hhHHHHH----------------HHhcccccccccCCChhHHHHHHHHHHHhcCCcccchhHHHHHHHhhhcCCCccccc
Q 000078 1092 PKSLIIE----------------ILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIT 1155 (2405)
Q Consensus 1092 ~K~LLlE----------------VLe~~~~SkVFkPPNPWtm~IL~LL~ELy~~~dLKLNLKFEIEVLcK~L~ldl~die 1155 (2405)
||++|+| ||++++.|+||||||||+||||+||+|||+++++||+||||||+|+|+||++++.||
T Consensus 908 Fk~~lve~~~~~Ri~~vvpFV~k~L~~as~s~IFkPpNPW~mgILkLL~El~~~a~~~l~lkFEie~Ll~~lnv~~~~ik 987 (2005)
T COG5103 908 FKKFLVESVECRRILFVVPFVSKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLLRHLNVELVPIK 987 (2005)
T ss_pred HHHHHHHHhhcCceEEeehHHHHHHHhcccceEecCCCchHHHHHHHHHHHHhcCcceeehhhhHHHHHHhcceeeccCC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhccCCCCCCCCccCCCCCcccCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccccccccccCcCcchh
Q 000078 1156 PTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLME 1235 (2405)
Q Consensus 1156 Ps~~L~~r~~~~~~~~d~~~k~~~~~q~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~l~~ 1235 (2405)
|++.++++...-. +. .+.+||. -++ .+.|.+ ..+++||.... .++. ..+
T Consensus 988 Ps~~~~n~~V~ks--------~L----Eke~~Ed------vL~-a~~~d~----------~~~~~qyi~~~-sSq~-Tvt 1036 (2005)
T COG5103 988 PSKSLGNHLVLKS--------RL----EKELPED------VLN-AKFPDG----------TDYLAQYIIED-SSQI-TVT 1036 (2005)
T ss_pred hhhhhCcHHHHHH--------HH----hhhchHH------HHh-hhcccc----------chHHHHHHHHh-hhcc-hHH
Confidence 9999987653100 00 0011110 000 001100 01233433100 0000 001
Q ss_pred HHHHhhccCCCCCCccccccccCCCCCCCcccccccCCCCCCceEEecccccccccchhhhhhHHHHHHHHHHhhhhccc
Q 000078 1236 DEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIV 1315 (2405)
Q Consensus 1236 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~~ip~l~~~~~in~~l~~f~~~p~LkriV~~AidRAIrEII~PVV 1315 (2405)
|. ++. +...| -|.+|++.++|++.+||||++.||
T Consensus 1037 D~-va~--------------------------------------~~g~P-------~PaiK~~~Qlal~~SVrEI~~aVV 1070 (2005)
T COG5103 1037 DL-VAR--------------------------------------HVGSP-------KPAIKNLTQLALDLSVREICGAVV 1070 (2005)
T ss_pred HH-HHH--------------------------------------HcCCC-------ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111 01111 289999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 000078 1316 QRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQL 1395 (2405)
Q Consensus 1316 eRSVtIA~iTT~eLV~KDFA~EpDE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si~~~Lr~~l~~~~~~~~~~Eq~i~~ 1395 (2405)
|||+.||++||+.|++||||||.|+.++..||++||++|||+||+|||+|||++.|.+++|++..++.+....+-+++..
T Consensus 1071 eks~gIAi~Tt~~l~~KDFa~ev~~s~l~~aar~Mv~~La~~La~vT~~EPlk~~i~~n~rs~a~~l~sv~~~~ae~vd~ 1150 (2005)
T COG5103 1071 EKSCGIAIQTTMALFKKDFAMEVEKSMLYVAARNMVVNLAKFLALVTAQEPLKACISGNVRSYAMKLCSVLDFSAEKVDK 1150 (2005)
T ss_pred HHhccchhhHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhccHHHHHHHHhhhhhchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988877666778888999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCcCcccccccccCCCCCCCCCCCCCCHhHHHHh
Q 000078 1396 VTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVY 1474 (2405)
Q Consensus 1396 ~vnDNldLac~iIEKaA~EKAi~eIde~l~~~~~~RRkhre~-~g~~f~D~~~~s~~~~~LPe~LrlkpgGL~~~Q~~VY 1474 (2405)
++++|++.||.+||||+++|++++|+..|+.++..|||||++ ++.||+||++ +..+++||++|+++-||+||+|+++|
T Consensus 1151 ~~~eN~~va~~lIe~a~~~k~~~~i~aei~h~Iv~R~~Hrktt~n~PFvd~aa-a~~slnLps~L~ls~~~~Tpqqf~ly 1229 (2005)
T COG5103 1151 IAMENQDVACRLIERAGVSKVSESISAEIEHMIVERVRHRKTTPNLPFVDPAA-ANLSLNLPSSLELSIGKATPQQFSLY 1229 (2005)
T ss_pred HHHhchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCccCccc-CccccCCCcccccccCCcCHHHhhhh
Confidence 999999999999999999999999999999999999999997 7999999996 55578999999999999999999999
Q ss_pred HhhhcCcCCcCCCCCCCccccCCcCCCCchhhhhcccCCCCCCCCCCCCCCCCCCcccccCCccccCCCcccCccccccc
Q 000078 1475 EDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLST 1554 (2405)
Q Consensus 1475 EdF~r~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 1554 (2405)
|||.|+|-..- .+|.+.++.-+. ...+++ ++.+ + |.++. +..+.-..
T Consensus 1230 E~fD~l~ls~i---~~h~~~~~~n~~----------~Td~ad---------stda---l--~~nl~------nt~e~eAn 1276 (2005)
T COG5103 1230 EDFDRLSLSTI---MGHIEKIAINAI----------DTDSAD---------STDA---L--NNNLN------NTVENEAN 1276 (2005)
T ss_pred hcccccccccc---ccccchhhhhhh----------cCChhh---------hhhh---h--ccccc------hhhhhHHH
Confidence 99999763221 122221111000 000000 0000 0 00000 00000000
Q ss_pred cc-ccccCCCCCcccccccccccccCChhhhhhhccCCCCCCCCCCCCCCCCCCCchhhhccccccccccchhhhHHHHH
Q 000078 1555 SL-VHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYH 1633 (2405)
Q Consensus 1555 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~ 1633 (2405)
|+ +++.. . .-. + +.+ ..+. . .+++.. .+..+. . +..|
T Consensus 1277 Qta~~yq~-n-----------~L~-i-~~q--l~Ql----~--------~~~Py~-~~~~V~---------a----D~e~ 1314 (2005)
T COG5103 1277 QTALEYQE-N-----------LLI-I-KAQ--LVQL----S--------KKIPYS-SKKNVI---------A----DEEH 1314 (2005)
T ss_pred HHHHHHHH-H-----------hhh-h-hhH--HHHh----c--------ccCCcc-hhhcCc---------c----hhhh
Confidence 00 01100 0 000 0 000 0000 0 011110 011111 0 1111
Q ss_pred HHHHHHHHHhhcCCcchhhHHHhhhhHHHHHhhcChhHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHhHHHHH
Q 000078 1634 IVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVK 1713 (2405)
Q Consensus 1634 ~~~~~l~~l~~~~~~~~~i~~~i~~v~~~i~~~~~rd~~al~~aqki~~~L~~~~~~~l~~ev~~~~L~~L~~~~~~~~k 1713 (2405)
-. +.+. . +++..++.+|...|.++ |+.++.++|.+++.|+..+.+++++||+.++||+||++|-+++|
T Consensus 1315 ~~---lkE~-----~-NQ~~t~~~~Il~~Ia~s---d~~~l~c~q~c~~il~~~skSp~~~evls~~lEkic~~S~kt~k 1382 (2005)
T COG5103 1315 GL---LKEG-----K-NQFETVFRRILESIASS---DDKDLECIQLCRYILGHLSKSPSKEEVLSRCLEKICKISFKTQK 1382 (2005)
T ss_pred hH---HHhh-----H-HHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHhHhHHHhh
Confidence 11 1111 1 35667777777777655 99999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccccccCHHHHHHHHHhCCCChhHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCchhh-HhhHHHHHHH
Q 000078 1714 ELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVV-ISELHNLVDA 1792 (2405)
Q Consensus 1714 evt~wl~~~~d~rk~Nv~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~~~~~~-~~df~~tlea 1792 (2405)
+|.||++|+.|.||||+|+|.+||++||||..|||.+|++.|.+.. +.++|||+.|++.++.+|.++. ..||.+|+|.
T Consensus 1383 ~V~~wl~ysnD~rKfnip~I~slie~nli~~~E~D~~l~r~i~~~~-gnvtdFai~Ll~~~V~~e~pi~~~~dFI~tLe~ 1461 (2005)
T COG5103 1383 EVLGWLIYSNDPRKFNIPLIGSLIEHNLINVVEYDQALSRKIPLAD-GNVTDFAIALLASLVTAEVPICTVYDFICTLEM 1461 (2005)
T ss_pred hhheeeeecCChhhcCcHHHHHHHHhccchhhhHHHHHHhhccccc-cchHHHHHHHHHHHhccCCceeeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997544 4589999999998887776654 5999999998
Q ss_pred HHHHHcCCCChhHHHHHHHHHhCcccccCCCCCCccccchhhhhhcccccccCcccCccCCCCCCCCCCCCCChHHHHHH
Q 000078 1793 LAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSM 1872 (2405)
Q Consensus 1793 L~~~~~~~~~~~~l~~l~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~eq~~~ 1872 (2405)
|+.-. + +.++++.+++.+... ..+..| ....+.||+..
T Consensus 1462 la~s~----d-~~vk~f~~~~~~tm~---------------------~~v~kg----------------nKqq~ndqi~i 1499 (2005)
T COG5103 1462 LAGSS----D-PKVKDFFQKISNTMM---------------------HIVAKG----------------NKQQLNDQIII 1499 (2005)
T ss_pred HhccC----C-hhHHHHHHHHHHhhh---------------------hccccc----------------ccccccceEEE
Confidence 85432 2 455777766643100 000011 12356799999
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHcCcccCCchhHHHHHHHHHHHHHHhhhccccCCCCCCCCCccccccchhhhH
Q 000078 1873 LFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDI 1952 (2405)
Q Consensus 1873 lF~EWv~l~~~~~~~~~~~~~Fi~qL~~~giL~~~d~~~~FfR~~~E~sV~~~~~~~~~~~g~~~~~s~~~~~~f~~iDA 1952 (2405)
+|.|||++.++...+|..-..|+.||+++|+++.+|+...|||+.+|.+|..|.+.. +.+.+|..|||
T Consensus 1500 Vf~ewv~llrn~~~nD~v~~~F~~ql~e~g~~s~~~~~~~ffk~sle~~i~aF~e~~------------pta~~y~~IDa 1567 (2005)
T COG5103 1500 VFSEWVELLRNCRFNDTVPEMFLPQLMERGDYSASLDIRSFFKVSLEHFIRAFHERI------------PTAYCYLKIDA 1567 (2005)
T ss_pred eeHHHHHHHHhcccccccHHHHHHHHHHccCCCchHHHHHHHHhhHHHHHHHHhhcC------------Ccccceeeccc
Confidence 999999999999999999999999999999999999999999999999999997432 24799999999
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHhhcCCCCCCCcchHHHHHHH
Q 000078 1953 YAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAF 2032 (2405)
Q Consensus 1953 ~akLi~~lvk~~~~~~~~~k~~~L~kiL~iiv~vl~~dhe~~~~~FnQRpyfRlfs~LL~el~~~d~~l~~~~~~il~~f 2032 (2405)
|+.||+.++++. +..+.++..|++||++++++|+.++|..+++.||+|+||||||++|+||.......++.-..+.+.|
T Consensus 1568 l~sLi~n~l~~e-G~te~T~s~~~~kii~~i~~VFae~h~~~~e~~h~~~fFrLfS~il~e~~dv~~~d~s~fv~~~Sv~ 1646 (2005)
T COG5103 1568 LPSLIKNRLYEE-GSTEGTVSVLFRKIIKDILFVFAEAHRKRAEFVHNYLFFRLFSRILIETLDVIDEDTSCFVNNRSVV 1646 (2005)
T ss_pred hHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhhhhhccchhhhhhHHHH
Confidence 999999999996 4445678899999999999999999999999999999999999999999875544445556788899
Q ss_pred HHHhhhcCCCCCCchhHHHhHHhhcccchHhhhcCCCCCChHHHHHHHHHHHHhhhhhhcCCCCCchHHHHHHhHHHHHH
Q 000078 2033 ANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLL 2112 (2405)
Q Consensus 2033 a~~l~~LqP~~~PgF~FaWl~LISHR~FmP~lL~~~~~~GW~~~~~LL~~ll~Fl~~~L~~~~ls~~i~~lYkGtLRilL 2112 (2405)
-++|..|||.+||||+|||++|+|||+.+|++|+.|+.+||..|..+|+++|||+. ++...+...++++|+|+||+.|
T Consensus 1647 y~~f~alqP~~fPgFtfawl~llSH~~llP~vL~v~Nd~~~d~f~~~lmsflKFlD--~s~~~v~~~~~~ly~Gflr~iL 1724 (2005)
T COG5103 1647 YSIFEALQPSRFPGFTFAWLELLSHKFLLPKVLLVNNDKINDLFSEGLMSFLKFLD--LSEEGVVLVMEALYCGFLRTIL 1724 (2005)
T ss_pred HHHHHHcCcccCCchHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcchheee
Confidence 99999999999999999999999999999999999999999999999999999998 7888889999999999999999
Q ss_pred HHHhcchhHHHHHhHhhhccCCCCCcccccceecccCCCCCCCCCCCCCCCCCCCcCccCCCccccchHHHHHHhhhhHH
Q 000078 2113 VLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRAD 2192 (2405)
Q Consensus 2113 vLlHDfPEFL~~yh~~lc~~IP~~ciQLRNlILSA~P~~mrLPDPftp~Lkvd~lpEi~~~P~I~~d~~~~L~~~~lk~~ 2192 (2405)
|++||||-||+++||++...+|+.|+||||+||||||++|.+||||..||||.++|+|+..|.++.|+...| .++++.
T Consensus 1725 v~~hD~P~FLit~~yql~~~~P~e~vqlrNm~lSa~Psdlt~p~Pfa~~Lkv~~~P~~k~~p~~f~d~~v~l--e~~~s~ 1802 (2005)
T COG5103 1725 VYLHDFPGFLITQIYQLFRRNPLECVQLRNMMLSAYPSDLTYPCPFAQGLKVQEYPHIKNFPNQFRDRIVPL--EGQNSF 1802 (2005)
T ss_pred eeeccCchHHHHHHHHHhhcCCHHHHHHHHHHHHhccccCcCCCchhcccccccChHhhhhhHHhcccccch--hhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887 478888
Q ss_pred HHHHhccCCCCcchHHHHHHHccCCccccccCCcc---ccHhHHHHHHHHHHHHHHHhhhccCCcccccCCCCchhhhh-
Q 000078 2193 VDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTR---YNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFL- 2268 (2405)
Q Consensus 2193 vD~yL~~r~~~~~~l~~i~~~L~~~~~~~~~~g~~---yN~~liNAlVLyVG~~Ai~~~~~~~~~~~~~~~~~~~~~f~- 2268 (2405)
+| | |.+.++.+..+.+++...-+.....|.. ++-..+-++|.|+|+.++.... + .|+
T Consensus 1803 ~d--L--e~~~~S~l~~~~s~~~~d~y~~k~t~~~~~~~dn~~~~~~V~h~~~es~~~~~-----~----------~f~~ 1863 (2005)
T COG5103 1803 FD--L--EACLRSALQNRTSVKVTDLYIGKNTPLWVYLIDNLNEMDAVSHTVVESIKFMI-----E----------RFMH 1863 (2005)
T ss_pred hh--h--HHHhhhhhhHHHHHHHHHhhccccCceeeeeeccHHHHHHHHHHHhhhHHHHH-----H----------HHhc
Confidence 88 5 5566677777777665544333233322 2456788999999999865311 1 233
Q ss_pred hhhHHHHHHHHHhccChhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccc----chhhHHHHHHHHHHHhccCCCCc
Q 000078 2269 VSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEAN----QEIIQEQITRVLFERLIVNRPHP 2344 (2405)
Q Consensus 2269 ~s~~~~il~~L~~~ld~EgRY~ll~aiaNQLRYPNsHT~yFS~~lL~LF~~~~----~~~IqEqItRVLLERLIv~rPHP 2344 (2405)
+|+.+.++..++..++++.||+++.||+|||||||+||+||||++|++|.+++ +-.||||||||||||+|||||||
T Consensus 1864 ks~~~t~l~~~~r~g~~~~rY~ll~ai~~qlRYp~ihTy~fs~vfl~~fkS~~~N~QkL~ikE~m~t~lLeRII~NrPH~ 1943 (2005)
T COG5103 1864 KSEILTMLWIRMRAGGPPKRYFLLTAILAQLRYPEIHTYDFSRVFLKSFKSHGYNPQKLLIKEQMTTVLLERIICNRPHP 1943 (2005)
T ss_pred cccHHHHHHHHHhcCCCchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 35589999999999999999999999999999999999999999999998763 45799999999999999999999
Q ss_pred hHHHHHHHHHhhCCCCccccCCcCcchHHHHHHHHHHHHhcCCCCCCC
Q 000078 2345 WGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVD 2392 (2405)
Q Consensus 2345 WGLliTfiELiKNp~Y~Fw~~~Fv~~aPEIe~lF~svarsc~~~~~~~ 2392 (2405)
|||+|||+||+||.+||||+||||+..|||.++|+++.+++|.+..+.
T Consensus 1944 WGl~i~FTeLlkNeD~Nf~k~Pyikr~~EI~~lfdsL~e~v~a~ssan 1991 (2005)
T COG5103 1944 WGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFDSLHEHVMAPSSAN 1991 (2005)
T ss_pred chhheeHHHHhcccccchhcCcccccCHHHHHHHHHHHHHhhCccccc
Confidence 999999999999999999999999999999999999999999776544
No 2
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=100.00 E-value=1.2e-284 Score=2660.37 Aligned_cols=1454 Identities=37% Similarity=0.588 Sum_probs=1146.8
Q ss_pred hhHHHHhhcCCchhHHHHHHHhhcccccCHHHHHHHHhhcCcchHHHHHHHHHHHHhhcccccccCCCCCCCcccccccc
Q 000078 532 KILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYM 611 (2405)
Q Consensus 532 k~L~~ll~~~p~~f~idLA~lAsrre~l~lekWL~~~l~~~~~~f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~ 611 (2405)
.-++-|.|+.||.++++.+.+|+.++++++..|+..++.--.+ |..++.-... .++.++.+..+...
T Consensus 82 ~~~~~v~Nm~pn~~~~n~~~la~~~~a~~F~~~l~~~~~~~~~-----~~~~~s~~~~--------~~q~~~~~~~~~~~ 148 (1591)
T KOG1831|consen 82 PGMDIVGNMSPNLEALNIRDLASCFGAVNFSIWLLESLYLMID-----DAVPLSLIIT--------APQEPSFKPWPNER 148 (1591)
T ss_pred CcchhhhhcCcchhhhchHhhhhhcCCCCchhhhcccceeecc-----CCCcccceee--------ccccccCCCChhHH
Confidence 4578899999999999999999999999999999988653221 1222221111 01111111111100
Q ss_pred -hhHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCCCCCC-----CCCCCChhhHHHHHHHHHHHHhccCC
Q 000078 612 -EKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADS-----STSEGYADDIEAEANSYFHQMFSGQL 685 (2405)
Q Consensus 612 -etv~~ll~~L~~~~~~~~s~~l~e~l~~v~~~~i~~~PRL~n~~~~d~-----~~~~~f~~dIE~Ean~yfqkmYs~ei 685 (2405)
.++..++-..... ++ -.+..-+++.+|. .++.+|++|||+|||+||||||+ .+
T Consensus 149 ~~qi~~l~p~~~~q---------------~q-----rt~s~sa~~~~d~v~~~~~~~~~~s~die~E~~sYfqkiYn-~l 207 (1591)
T KOG1831|consen 149 FAQIYFLLPIGPSQ---------------LQ-----RTESVSAPGPHDPVFFARQVSIEFSRDIEFEVNSYFQKIYN-CL 207 (1591)
T ss_pred HHHHHHHccCChhh---------------cc-----ccccccCCCCCCchhhhcccccccChhHHHHHHHHHHHHHH-Hh
Confidence 1122221111100 00 1111113333443 34578999999999999999999 99
Q ss_pred CHHHHHHHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000078 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (2405)
Q Consensus 686 sI~eiv~~L~r~K~S~~~rdqdvFaCMIh~LFdEYrFF~~YP~~eL~iTAvLFG~lI~~~Lv~~~~L~iALr~ILeAlrk 765 (2405)
||+++|++|+|||.|.++|||++|+||.|+||||||||++||++||++||+||||||.|+|+++.+||+|+|+|++|+++
T Consensus 208 sI~~vI~lL~rfr~Se~~Rdq~vf~C~~~~lF~EyrFF~dYPe~~L~~Ta~lfGsiI~~~Lls~v~l~la~R~Vl~~l~~ 287 (1591)
T KOG1831|consen 208 SIFQVIDLLQRFRLSELPRDQEVFACAAHNLFEEYRFFRDYPELALATTAVLFGSIIFFVLLSFVELGLALRLVLAALGI 287 (1591)
T ss_pred hHHHHHHHHHhcccccChhhhhHHHHHHhhccccccccccCHHHHHHHHHHhcchhHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhhcCCCCCCCCCCCcccccccccccC
Q 000078 766 PADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATS 845 (2405)
Q Consensus 766 p~~SkMf~FGiqAL~qF~~RL~EwPqyC~~LlqIp~L~~~~p~l~~~ie~~l~~~~~~~~~~~~~~~~~~~q~~~~q~~~ 845 (2405)
||+||||+||++||.+|+.||.+||+||.+|+.+|++..++|++|++|....- +.. . +.
T Consensus 288 P~~skl~~Fgv~Al~~frskL~~Yp~yC~~Il~~~~~s~~~~~l~~~I~~~~~---san----a---~~----------- 346 (1591)
T KOG1831|consen 288 PPSSKLFIFGVQALLPFRSKLLDYPKYCFDILSIPPFSKFRPHLYDSIWETAT---SAN----A---TT----------- 346 (1591)
T ss_pred CChhHHHHHHHHHHHHHHHHhcchHHHHHHHHhCcchhhccHHHHHHHHhhhh---hcc----C---CC-----------
Confidence 99999999999999999999999999999999999999999999999976321 110 0 00
Q ss_pred CCCCccCCcccccccchhhhHHhhhcccccccccccccccccCCCCCccccCC-CCCcccCCCCCchhhhhcccCCCccc
Q 000078 846 GNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIG-QPSSVAPLGDTSSAQKLHNAVSAPAM 924 (2405)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~qq~~~g~l~~~~~~~~~~~~~~~p~~~~i~-~~~~~~~~~~~~~~~~~~~~p~~~~~ 924 (2405)
....|..+..+ .++++
T Consensus 347 ------------------------------------------~~s~pv~~~~p~~~~av--------------------- 363 (1591)
T KOG1831|consen 347 ------------------------------------------RKSDPVRSASPYLDSAV--------------------- 363 (1591)
T ss_pred ------------------------------------------cccccchhccccccccc---------------------
Confidence 00001000000 00000
Q ss_pred cccCCCccCCCCCccccccccccchHHHHHHhhhcCCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhH
Q 000078 925 LSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPW 1004 (2405)
Q Consensus 925 ~~~~~~~~~p~~~~~~~~~~~~~ni~tL~~a~e~~~~~~e~Ppe~vqDKI~FIiNNlS~~Nle~K~~Elke~L~e~y~~W 1004 (2405)
+. + . + ..+.+.|||+|+|||+|++||+|+.|+.+|++|+|++|+++||+|
T Consensus 364 -s~--~-~-~-------------------------P~n~~~~~e~v~dkilF~lNNlsq~N~~qKvdevk~~ltp~y~~W 413 (1591)
T KOG1831|consen 364 -SK--H-V-E-------------------------PKNAEGPPEDVVDKILFPLNNLSQLNFNQKVDEVKEILTPEYYPW 413 (1591)
T ss_pred -cc--c-C-C-------------------------cccccCCchhhhhhheeeechHhhhhhHHHHHHHHHHcChhhHHH
Confidence 00 0 0 0 112358999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcccCCchhHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhcccccccChHHHHHHHhhhhhhhhhhhhcCcc
Q 000078 1005 FAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQV 1084 (2405)
Q Consensus 1005 FA~YLV~kRAsiEPNfH~LYl~fLd~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ssseRslLKNLGsWLG~iTLarNkP 1084 (2405)
||+|+|+||||+|+|||+||.+|++.+++.. | -+||++|||||||||.||||||||
T Consensus 414 fs~YiV~qR~S~E~Nf~~LYskFi~ai~n~~--------t----------------~~dk~~LKNLgsWLG~iTl~rNkP 469 (1591)
T KOG1831|consen 414 FSQYIVTQRVSKEINFHELYSKFISAIKNSV--------T----------------ESDKRLLKNLGSWLGEITLGRNKP 469 (1591)
T ss_pred HHHHHhhhhhhcccchHHHHHHHHHHHhCcc--------c----------------hhHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999982 2 179999999999999999999999
Q ss_pred cccCCCChhHHHHH----------------HHhcccccccccCCChhHHHHHHHHHHHhcCCcccchhHHHHHHHhhhcC
Q 000078 1085 LRAREIDPKSLIIE----------------ILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLG 1148 (2405)
Q Consensus 1085 I~~k~id~K~LLlE----------------VLe~~~~SkVFkPPNPWtm~IL~LL~ELy~~~dLKLNLKFEIEVLcK~L~ 1148 (2405)
|++.++|||+||+| ||+.|.+|+|||||||||||||++|+|||++||||+|||||||||||+||
T Consensus 470 I~~l~l~~kslLlEaY~sg~ll~VvPFVaKIL~~asksrIFkpPnpW~~gIlklL~ELh~e~d~klnLkFEIEVLlkslN 549 (1591)
T KOG1831|consen 470 IKELDLDFKSLLLEAYGSGRLLPVVPFVAKILEGASKSRIFKPPNPWTMGILKLLAELHQEADLKLNLKFEIEVLLKSLN 549 (1591)
T ss_pred hHHhhhhHHHHHHHHhccCceeecchHHHHHHHhhhhccccCCCCchHHHHHHHHHHhcccccceeeeeeeeeehhcccc
Confidence 99999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccccchhhccCCCCCCCCccCCCCCcccCCCCCcccCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 000078 1149 VDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRL 1228 (2405)
Q Consensus 1149 ldl~diePs~~L~~r~~~~~~~~d~~~k~~~~~q~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~ 1228 (2405)
++++++||+++++|..+. .+... .+.++.. +..+++.. +|
T Consensus 550 ~~l~~le~~~~lnn~~~i-~~~L~-----------~~~~e~h-------~~~~~~~~--------------q~------- 589 (1591)
T KOG1831|consen 550 VILSELEPSETLNNIIRI-KKQLV-----------LMKLETH-------QSLELEDI--------------QQ------- 589 (1591)
T ss_pred chHhhcchhhHHhhHHhH-HHHHc-----------cCChhhc-------cccccCch--------------hc-------
Confidence 999999999999994431 11110 0000000 00000000 00
Q ss_pred CcCcchhHHHHhhccCCCCCCccccccccCCCCCCCccccccc-CCCCCCceEEecccccccccchhhhhhHHHHHHHHH
Q 000078 1229 SSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAI 1307 (2405)
Q Consensus 1229 ~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~-~ip~l~~~~~in~~l~~f~~~p~LkriV~~AidRAI 1307 (2405)
+.++ + ...|++++... ...++.+++.+.| ||++|++|+.|++++|
T Consensus 590 ----------------------~~~~---~--~~~fa~~~~n~~t~~~~i~~l~~~~-------~P~~Kh~~~~Aleqsv 635 (1591)
T KOG1831|consen 590 ----------------------VTLG---N--TIAFAYDARNVSTATEVIKQLDLRP-------HPDIKHRVQEALEQSV 635 (1591)
T ss_pred ----------------------cccc---C--CccceecccccchhhhhhhhccCCC-------CccHHHHHHHHHHHHH
Confidence 0000 0 11144444322 1223334444444 8999999999999999
Q ss_pred HhhhhccchhhhHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHH
Q 000078 1308 KEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASE 1387 (2405)
Q Consensus 1308 rEII~PVVeRSVtIA~iTT~eLV~KDFA~EpDE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si~~~Lr~~l~~~~~~~~ 1387 (2405)
+|||.||||||+.||++||+.||+||||+|+||+|||.||+.|||+||++||++||||||+++|+++|+..+.++.....
T Consensus 636 ~eii~~Vv~rs~~IA~ttTe~lirKDFA~e~~es~l~~Aa~~M~r~la~~lAmiTcreplk~am~~nl~~~~~~~l~~~~ 715 (1591)
T KOG1831|consen 636 VEIIEPVVERSSGIASTTTESLIRKDFALERDESRLRLAASQMVRELAAGLAMITCREPLKVAMSSNLVLAALSLLSLMA 715 (1591)
T ss_pred HHHHHHHHHHhhceeehhHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777666778
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCcCcccccccccCCCCCCCCCCCCC
Q 000078 1388 LLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHL 1466 (2405)
Q Consensus 1388 ~~Eq~i~~~vnDNldLac~iIEKaA~EKAi~eIde~l~~~~~~RRkhre~-~g~~f~D~~~~s~~~~~LPe~LrlkpgGL 1466 (2405)
.+++++..+++||++++|++|||+|+|||+.|||.+|++++..|+.||++ ++.+|.|+....+. ..|||++|+++||+
T Consensus 716 ai~~a~~t~~~dNv~l~~~~Iek~a~eka~~dI~~~L~q~~~~Rv~~k~~~~~~~fvD~~~~~~~-~~LP~~vr~~~~~~ 794 (1591)
T KOG1831|consen 716 AIARAADTLQSDNVELVVKFIEKTAIEKATQDIDSRLEQDICGRVFHKENPEVMPFVDLLSAAYS-CTLPEVVRLKIGGL 794 (1591)
T ss_pred HHHHHHHHHHhhchhhHhhhhHHHHHHHHHHHHHHHHHHhhHhheecccCCccccchhhhhhhhh-ccCcHhhhcccCCC
Confidence 99999999999999999999999999999999999999999999999997 78999999875654 44999999999999
Q ss_pred CHhHHHHhHhhhc-CcCCcC-CCCCCCccccCCcCCCCchhhhhcccCCCCCCCCCCCCCCCCCCcccccCCccccCCCc
Q 000078 1467 SVSQQRVYEDFVR-LPWQNQ-SSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTT 1544 (2405)
Q Consensus 1467 ~~~Q~~VYEdF~r-~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 1544 (2405)
+|+|++|||+|+| +|+... ++...+... .+++.++++...
T Consensus 795 ~~~l~~vYe~F~k~i~~~~~~s~~~~la~~--------------------------------------~~~~~dlt~~~~ 836 (1591)
T KOG1831|consen 795 TPQLFRVYEEFPKPIPGFLGNSSRKDLAEY--------------------------------------ITESSDLTQPHV 836 (1591)
T ss_pred CHHHHHHHHHcccccccccccCCCcccccc--------------------------------------cCCCccccchhh
Confidence 9999999999998 554211 111111000 011111110000
Q ss_pred ccCcccccccccccccCCCCCcccccccccccc-cCChhhhhhhccCCCCCCCCCCCCCCCCCCCchhhhcccccccccc
Q 000078 1545 ESTSAGFLSTSLVHIGAADGGILHNSESESVNA-AFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSL 1623 (2405)
Q Consensus 1545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1623 (2405)
.+..+... .+++.++. ... .+..++.+.++.. ++ .....|+.+
T Consensus 837 -------~s~~~~lv------~~ei~~~~-~~~a~~~~i~~~~l~~~----------a~---s~~~~m~~v--------- 880 (1591)
T KOG1831|consen 837 -------ISNALDLV------VREICGAI-VEKACQTAIQTGMLQFK----------AQ---SVEKLMEEV--------- 880 (1591)
T ss_pred -------hhHHHHHH------HHHHHHHH-HHHHHHHHHHhhhhhhh----------hh---cchhhHHhc---------
Confidence 00000000 00000000 000 0000000000000 00 000011111
Q ss_pred chhhhHHHHHHHHHHHHHHhhcCCcchhhHHHhhhhHHHHHhhcChhHHHHHHHH--HHHHHHhcccCCcchHHHHHHHH
Q 000078 1624 QTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQ--KVFKGLYENASNNLHFSAHLAIL 1701 (2405)
Q Consensus 1624 ~~~~~l~~~~~~~~~l~~l~~~~~~~~~i~~~i~~v~~~i~~~~~rd~~al~~aq--ki~~~L~~~~~~~l~~ev~~~~L 1701 (2405)
+.++..............++.. .-.+-.+.+ +.+...+ ..+--.+++..+|
T Consensus 881 -----------------------~~~~~~~~~~~~~~~~~ar~i~-hli~~~V~~~~~~l~~~~---~~~~I~~i~m~iL 933 (1591)
T KOG1831|consen 881 -----------------------PARNMVVNLVNSLLLLVARSIE-HLISGLVSYFMKNLELDF---STEKIFKIIMEIL 933 (1591)
T ss_pred -----------------------cchhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh---cchhHHHHHHHHH
Confidence 0000100111111100000000 000001111 1111111 1122345677788
Q ss_pred HHHHHHhHH-HHHHHHHhhhccccccccCHHHHHHHHHhCCCChhHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCch
Q 000078 1702 AAIRDVCKL-VVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESR 1780 (2405)
Q Consensus 1702 ~~L~~~~~~-~~kevt~wl~~~~d~rk~Nv~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~~~~ 1780 (2405)
+-+|....+ ..+.|+-.+..+++++|||++.+..|++.+|++..++|.+|+++|++|.|..++.|+++|++....++..
T Consensus 934 ~~ic~~~qk~~~~~vs~a~s~~~~~~e~n~~~~~~L~~~~l~~~~~vd~~l~~amDs~~n~~vi~f~iell~~~~~~dnv 1013 (1591)
T KOG1831|consen 934 DNICRFIQKAGVRKVSEAISSSRSSLEYNIEKAEHLILSLLLDSGHVDKHLAKAMDSGGNQEVIAFLIELLRIAYGGDNV 1013 (1591)
T ss_pred HHHHHhccHHHHHHHHHHHHhchHHHHhhHHHHHHHHHHhccChhhHHHHHHHHhccCCChHHHHHHHHHHHHhccCcch
Confidence 888887744 5555777888999999999999999999999999999999999999999999999999999988888875
Q ss_pred hhH---hhHHHHHHHHHHHHcCCCCh----hHH----HHHHHHHhCcccccCCCCCCccccchhhhhhcccccccCcccC
Q 000078 1781 VVI---SELHNLVDALAKLAAKPGSP----ESL----QQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTAN 1849 (2405)
Q Consensus 1781 ~~~---~df~~tleaL~~~~~~~~~~----~~l----~~l~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1849 (2405)
+.. ..|..|.|.+.|+.+.-.+. +.. ...++.+-. ++.+
T Consensus 1014 i~~~~~~~~~~t~E~~~ri~q~v~s~~~~~g~~~~~~~~~v~~~~k----------------------------~~s~-- 1063 (1591)
T KOG1831|consen 1014 IADEWKNLFKETKEELFRILQSVESSEDKSGECASLCDYIVEHAIK----------------------------SGSS-- 1063 (1591)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccC----------------------------CCCc--
Confidence 433 35778999998864321110 111 111111100 0000
Q ss_pred ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHcCcccCCchhHHHHHHHHHHHHHHhhhcc
Q 000078 1850 REDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSE 1929 (2405)
Q Consensus 1850 ~~~~~~~~~~~~d~~~~~eq~~~lF~EWv~l~~~~~~~~~~~~~Fi~qL~~~giL~~~d~~~~FfR~~~E~sV~~~~~~~ 1929 (2405)
...-....+|+.++.||++.+|.|||++|+.+..++....+||+||+++|||++||..++|||.|+|+||+.++...
T Consensus 1064 ---~~~m~~~~~~~~~lt~K~~~v~~~Wv~L~~~~~~~~~s~~~fi~ql~~~GVls~dd~ltqFfr~~~el~~~i~~~a~ 1140 (1591)
T KOG1831|consen 1064 ---ADFMFRRMDDKQKLTEKTEIVFLEWVILLNDSRKNDESLAAFIQQLNEIGVLSTDDLLTQFFRADLELCVVIFLEAS 1140 (1591)
T ss_pred ---hhHHHHhcCcchhhhhHHHHHHHHHHHHHhccccchHHHHHHHHHHHHcCcccchHHHHHHHHhhhhhhHHHHHHhc
Confidence 00011234677899999999999999999999999999999999999999999999999999999999999998543
Q ss_pred ccCCCCCCCCCccccccc-hhhhHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHH
Q 000078 1930 VINPGTLQSPQQSQSLSF-LAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFI 2008 (2405)
Q Consensus 1930 ~~~~g~~~~~s~~~~~~f-~~iDA~akLi~~lvk~~~~~~~~~k~~~L~kiL~iiv~vl~~dhe~~~~~FnQRpyfRlfs 2008 (2405)
.. ....+ .+++|+.+....|.+|.. +++|.+|++||+++|++|+++||+++|+.|||+||||+|+
T Consensus 1141 ~~-----------~a~~~i~tv~~~~~~l~~l~~f~d---~~tk~dl~~KI~~livgv~akdHs~~~e~f~~~~y~Rlf~ 1206 (1591)
T KOG1831|consen 1141 LI-----------TALVQICTVYAFICTLEMLDGFVD---LPTKIDLFNKILNLIVGVFAKDHSERGEYFNQCPYFRLFS 1206 (1591)
T ss_pred cc-----------ccchhhhhHHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHhcchHHhhhhHhhCcHhHHHH
Confidence 10 12222 578888888888888863 2689999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCcchHHHHHHHHHHhhhcCCCCCCchhHHHhHHhhcccchHhhhcCCCCCChHHHHHHHHHHHHhhh
Q 000078 2009 NWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLE 2088 (2405)
Q Consensus 2009 ~LL~el~~~d~~l~~~~~~il~~fa~~l~~LqP~~~PgF~FaWl~LISHR~FmP~lL~~~~~~GW~~~~~LL~~ll~Fl~ 2088 (2405)
|+|.||..++.+++.+.++|+++|+++||.|||.++|||+||||+|||||+|+|+||..+++|||+.|++|+++|||||+
T Consensus 1207 ~ll~E~~~~~~~le~~~~~i~SaF~~tfhalqp~~~Pgf~fawL~lishr~li~~~L~~~~~k~~~~~~~llislfkfL~ 1286 (1591)
T KOG1831|consen 1207 MLLPELMTADSVLEPISLDILSAFKNTFHALQPRRFPGFAFAWLELISHRGLIPRMLAETNQKGWPLYAQLLISLFKFLA 1286 (1591)
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHHHHhCcccCcccceeeeecccchhHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCchHHHHHHhHHHHHHHHHhcchhHHHHHhHhhhccCCCCCcccccceecccCCCCCCCCCCCCCCCCCCCc
Q 000078 2089 PFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLP 2168 (2405)
Q Consensus 2089 ~~L~~~~ls~~i~~lYkGtLRilLvLlHDfPEFL~~yh~~lc~~IP~~ciQLRNlILSA~P~~mrLPDPftp~Lkvd~lp 2168 (2405)
||+||.+++++++.+|||||||+|||+||||||||+|||.|||.|||+|+||||+|||||||+|+|||||++|||||+||
T Consensus 1287 ~ylrn~~~~k~~~~lykgTLrVilvllhDfp~fl~~~hy~~~~~iPp~cvqlrniilsafp~~m~lpdpf~~~lkve~lp 1366 (1591)
T KOG1831|consen 1287 PYLRNYELFKPVQLLYKGTLRVILVLLHDFPEFLCEYHYGLCDTIPPNCVQLRNIILSAFPSNMRLPDPFAVNLKVEMLP 1366 (1591)
T ss_pred HHHhhhhhhhHHHHHHHcchHHhhcccccchHHHHHhhhhccCCCCcHHHHHHHHHHHhccccCcCCCccccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCccccchHHHHHHhhhhHHHHHHhccCCCCcchHHHHHHHccCCccccccCCccccHhHHHHHHHHHHHHHHHhh
Q 000078 2169 EIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQL 2248 (2405)
Q Consensus 2169 Ei~~~P~I~~d~~~~L~~~~lk~~vD~yL~~r~~~~~~l~~i~~~L~~~~~~~~~~g~~yN~~liNAlVLyVG~~Ai~~~ 2248 (2405)
|+..+|+|+++++. +.+...++++|.|+++|.+. +|+..++.-++... ..|++||..+|||+|+|||++||.++
T Consensus 1367 e~~~ap~i~~~~~~-i~~~~~~~dl~a~l~s~~~~-t~l~~~~~~~~~~~----~~~~~~~~~~~naiVlyvG~~ai~~~ 1440 (1591)
T KOG1831|consen 1367 EGFYAPRILYSITQ-IMPSNFRKDLDARLKSSSPV-TFLSCLPQLLQVIK----EPGTRYNNQLINAIVLYVGIQAIAHL 1440 (1591)
T ss_pred hhhcCchhcCCHHH-hcccccCCCHHHHhhccccH-hHHHHhhHHHHHhc----CccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 78889999999999999886 99999998877643 47999999999999999999999999
Q ss_pred hccCCcccccCCCCchhhhhhhhHHHHHHHHHhccChhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhcccchhhHHH
Q 000078 2249 QTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQ 2328 (2405)
Q Consensus 2249 ~~~~~~~~~~~~~~~~~~f~~s~~~~il~~L~~~ld~EgRY~ll~aiaNQLRYPNsHT~yFS~~lL~LF~~~~~~~IqEq 2328 (2405)
++++..++++ +++|+++|+||++|+.+||+||||++++||||||||||+|||||||++||||.+++...||||
T Consensus 1441 ~~~~~~~~~~-------~it~s~~~~i~~nL~~nld~e~ry~~l~aianqlryp~~ht~~~s~~~l~lfk~~~~~pike~ 1513 (1591)
T KOG1831|consen 1441 RRKSQNPSTS-------TITHSAYMDIFQNLIVNLDTEGRYLLLNAIANQLRYPNSHTYYFSCVFLYLFKRAGNNPIKEQ 1513 (1591)
T ss_pred HhccCCCccc-------ccccCchhhHHHHHHHhcchhhhHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCCCchHHH
Confidence 9887665544 467899999999999999999999999999999999999999999999999999988889999
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHhhCCCCccccCCcCcchHHHHHHHHHHHHhcCCCCCCCc
Q 000078 2329 ITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDD 2393 (2405)
Q Consensus 2329 ItRVLLERLIv~rPHPWGLliTfiELiKNp~Y~Fw~~~Fv~~aPEIe~lF~svarsc~~~~~~~~ 2393 (2405)
|||+++||+||||||||||+|||+||||||.||||+||||+|||||.+||++|+++|+....+..
T Consensus 1514 i~~~~lerii~nrPHpWGllitF~eLikN~~YNfw~~~fv~~~pEI~rlfqsl~~~~~~~s~s~~ 1578 (1591)
T KOG1831|consen 1514 ITRVLLERIIVNRPHPWGLLITFTELIKNPDYNFWDHPFVQCAPEIKRLFQSLAKYCKAYSTSEQ 1578 (1591)
T ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHcCCCcccccCcccccCHHHHHHHHHHHHHhhCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999996654444
No 3
>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [].
Probab=100.00 E-value=4.3e-115 Score=1068.65 Aligned_cols=366 Identities=59% Similarity=1.051 Sum_probs=342.7
Q ss_pred HHHHhhcCCCC--CCCcch--HHHHHHHHHHhhhcCCCCCCchhHHHhHHhhcccchHhhhc-CCCCCChHHHHHHHHHH
Q 000078 2009 NWLLDMSSLDP--VADGSN--FQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLI-GNGQKGWPYIQRLLVNL 2083 (2405)
Q Consensus 2009 ~LL~el~~~d~--~l~~~~--~~il~~fa~~l~~LqP~~~PgF~FaWl~LISHR~FmP~lL~-~~~~~GW~~~~~LL~~l 2083 (2405)
||||||+..+. .++..+ .+++.+||++||.|||.++|||+|||++|||||+|||+||. .++++||+.|++||+++
T Consensus 1 ~ll~e~~~~~~~~~~~~~~~~~~~~~~fa~~l~~lqP~~~PgF~faWl~LisHR~Flp~lL~~~~~~~gW~~~~~Ll~~l 80 (379)
T PF04054_consen 1 SLLCELHAISIEDSLESEELDRQFLLAFASFLHSLQPLYFPGFAFAWLELISHRMFLPKLLRNSPDQKGWPAYTRLLIDL 80 (379)
T ss_pred CeeeecccCcccccchhhhhHHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Confidence 58999995332 344444 59999999999999999999999999999999999999999 88999999999999999
Q ss_pred HHhhhhhhcCCCCCchHHHHHHhHHHHHHHHHhcchhHHHHHhHhhhccCCCCCcccccceecccCCCCCCCCCCCCCCC
Q 000078 2084 LQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLK 2163 (2405)
Q Consensus 2084 l~Fl~~~L~~~~ls~~i~~lYkGtLRilLvLlHDfPEFL~~yh~~lc~~IP~~ciQLRNlILSA~P~~mrLPDPftp~Lk 2163 (2405)
|+|+++|+|+.+++++++++||||||++|||+||||||||+||++||++||+||+||||+||||||++|+|||||+||+|
T Consensus 81 l~Fl~~~l~~~~~~~~~~~lYkg~LRillvL~HDfPeFL~~~h~~lc~~iP~~ciQLrNiILsA~P~~~~lpDPf~~~lk 160 (379)
T PF04054_consen 81 LKFLGPYLKNEELSDAIKVLYKGTLRILLVLLHDFPEFLCEYHFSLCDVIPPHCIQLRNIILSAFPRNMKLPDPFTPGLK 160 (379)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhcChhHHHHHHHHHHhCCCCCCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCccCCCccccchHHHHHHhhhhHHHHHHhccCCCCcchHHHHHHHccCCcccccc----CCccccHhHHHHHHHH
Q 000078 2164 IDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAAS----AGTRYNVPLINSLVLY 2239 (2405)
Q Consensus 2164 vd~lpEi~~~P~I~~d~~~~L~~~~lk~~vD~yL~~r~~~~~~l~~i~~~L~~~~~~~~~----~g~~yN~~liNAlVLy 2239 (2405)
||++|||+++|.|++|++..|++.|||+.||+||++|++ .+++++|+++|+.++.+... .|++||+++|||+|+|
T Consensus 161 vd~l~e~~~~P~i~~d~~~~L~~~~lk~~vd~~l~~~~~-~~~l~~i~~~l~~~~~~~~~~~g~~~~~~n~~linalVly 239 (379)
T PF04054_consen 161 VDRLPEIKQAPKILSDPTEDLQQAGLKKPVDQYLRNGPS-ESLLAQILHKLQLPEPEETNGFGFDGVKYNVKLINALVLY 239 (379)
T ss_pred chhchhhccCCccccchhhhcchHHHHHHHHHHHHhCCC-HHHHHHHHHHhcCCccccccccCCCCccccHHHHHHHHHH
Confidence 999999999999999999999999999999999987554 49999999999998876542 5699999999999999
Q ss_pred HHHHHHHhhhccCCcccccCCCCchhhhhhhhHHHHHHHHHhccChhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHhh-
Q 000078 2240 VGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYA- 2318 (2405)
Q Consensus 2240 VG~~Ai~~~~~~~~~~~~~~~~~~~~~f~~s~~~~il~~L~~~ld~EgRY~ll~aiaNQLRYPNsHT~yFS~~lL~LF~- 2318 (2405)
||++|+.+.+.++..+.++++ ++++++|++|++++|+||||++++||||||||||+|||||||+||+||+
T Consensus 240 vg~~a~~~~~~~~~~~~f~~~---------s~~~~ll~~Li~~ld~E~RY~ll~aiaNqLRYPN~HT~~Fs~~lL~lF~~ 310 (379)
T PF04054_consen 240 VGIQAVAEAQKKSSAPSFNTK---------SPHVTLLSKLIHELDPEGRYYLLSAIANQLRYPNSHTHFFSCVLLNLFSS 310 (379)
T ss_pred HhHHHHHHHhccCCCcccccc---------ChHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 999999887666555555543 6799999999999999999999999999999999999999999999999
Q ss_pred ---cccchhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhhCCCCccccCCcCcchHHHHHHHHHHHHh
Q 000078 2319 ---EANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARS 2384 (2405)
Q Consensus 2319 ---~~~~~~IqEqItRVLLERLIv~rPHPWGLliTfiELiKNp~Y~Fw~~~Fv~~aPEIe~lF~svars 2384 (2405)
+.++++||||||||||||+||+|||||||+|||+||+|||+|+||++|||||+||||++|++|+||
T Consensus 311 ~~~~~~~~~IqEqItRVLLERliv~rPHPWGllitfiELikN~~y~f~~~pFik~~pEI~~~f~~~~~~ 379 (379)
T PF04054_consen 311 DMNDPNDEDIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPKYNFWELPFIKCAPEIEKLFESLARH 379 (379)
T ss_pred CCCccchhhhHHHHHHHHHHHHhcCCCCCccHHHHHHHHHhCccCCcccCcccccCHHHHHHHHHHhcC
Confidence 667899999999999999999999999999999999999999999999999999999999999986
No 4
>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. This entry represents a domain of unknown function found in the Not1 subunit of the CCR4-Not complex.
Probab=100.00 E-value=2.5e-46 Score=406.94 Aligned_cols=145 Identities=56% Similarity=0.809 Sum_probs=140.1
Q ss_pred chhhhhhHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHH
Q 000078 1292 HLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSI 1371 (2405)
Q Consensus 1292 ~p~LkriV~~AidRAIrEII~PVVeRSVtIA~iTT~eLV~KDFA~EpDE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si 1371 (2405)
||+||++|+.|+||||||||.|||||||+||++||++||+||||+||||+|||+|||+|||+||||||+|||||||+.+|
T Consensus 1 ~p~lk~~v~~Al~rai~Eii~pvveRsv~IA~~Tt~~LV~KDFa~E~De~~~r~aa~~Mv~~LA~sLalvTcrepL~~~i 80 (147)
T PF12842_consen 1 HPQLKRIVQNALDRAIREIISPVVERSVTIASITTEELVKKDFATEPDENKMRRAAHNMVRSLAGSLALVTCREPLRESI 80 (147)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-CC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000078 1372 SSQLRNSLQGL-TI-ASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHRE 1436 (2405)
Q Consensus 1372 ~~~Lr~~l~~~-~~-~~~~~Eq~i~~~vnDNldLac~iIEKaA~EKAi~eIde~l~~~~~~RRkhre 1436 (2405)
.+|||+++++. +. .++++|++++++++||+||||++|||+|+|||++|||++|+++|+.||+|||
T Consensus 81 ~~~l~~~l~~~~~~~~~~~~e~~i~~~~~dNlel~~~~Iek~a~eka~~~id~~l~~~~~~R~~~re 147 (147)
T PF12842_consen 81 QNNLRSLLSQLNGSTEQELPEQAIQQIVNDNLELACAFIEKAAMEKAIKEIDERLEPEIELRRRHRE 147 (147)
T ss_pred HHHHHHHHHhhcCCchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999843 33 4689999999999999999999999999999999999999999999999996
No 5
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=93.15 E-value=0.31 Score=68.09 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=97.5
Q ss_pred CCcchhhHHHhhhhHHHHHhhcChhHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHhHHHHHHHHHhhhccccc
Q 000078 1646 DAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEE 1725 (2405)
Q Consensus 1646 ~~~~~~i~~~i~~v~~~i~~~~~rd~~al~~aqki~~~L~~~~~~~l~~ev~~~~L~~L~~~~~~~~kevt~wl~~~~d~ 1725 (2405)
+.+...|..++.++.+.|.+...++..+ +|.... ++...++|+.+..++.||...-...+++.+|++++-|.
T Consensus 919 ~~~~~~I~~i~m~iL~~ic~~~qk~~~~-----~vs~a~---s~~~~~~e~n~~~~~~L~~~~l~~~~~vd~~l~~amDs 990 (1591)
T KOG1831|consen 919 DFSTEKIFKIIMEILDNICRFIQKAGVR-----KVSEAI---SSSRSSLEYNIEKAEHLILSLLLDSGHVDKHLAKAMDS 990 (1591)
T ss_pred hhcchhHHHHHHHHHHHHHHhccHHHHH-----HHHHHH---HhchHHHHhhHHHHHHHHHHhccChhhHHHHHHHHhcc
Confidence 3455667777888888877777676533 333332 34567899999999999998888999999999999999
Q ss_pred cccCHHHHHHHHHhCCCChhHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCC
Q 000078 1726 RKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE 1778 (2405)
Q Consensus 1726 rk~Nv~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~~ 1778 (2405)
+ +|.||+..|+.. |.....-|..+|..++ ++.+...|+++++.+....++
T Consensus 991 ~-~n~~vi~f~iel-l~~~~~~dnvi~~~~~-~~~~~t~E~~~ri~q~v~s~~ 1040 (1591)
T KOG1831|consen 991 G-GNQEVIAFLIEL-LRIAYGGDNVIADEWK-NLFKETKEELFRILQSVESSE 1040 (1591)
T ss_pred C-CChHHHHHHHHH-HHHhccCcchhhhhhh-hhhhhHHHHHHHHHHHHhccc
Confidence 9 999999999999 9999999999999998 556788999999666554443
No 6
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=90.06 E-value=2.5 Score=48.83 Aligned_cols=105 Identities=23% Similarity=0.317 Sum_probs=80.9
Q ss_pred HhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHH---HHhhhcccCCchhHHHHHHHHHhCc--hhHHHHHHHHHHH
Q 000078 972 DKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQY---MVMKRASIEPNFHDLYLKFLDKVNS--KALNREIVQATYE 1046 (2405)
Q Consensus 972 DKI~FIiNNlS~~Nle~K~~Elke~L~e~y~~WFA~Y---LV~kRAsiEPNfH~LYl~fLd~l~~--~~L~~~Vl~eTy~ 1046 (2405)
.+|.-++|-+|++|++.-++|+.+..... +....+ .+++++-.+|+|-.+|..++..++. +.+-+.+++.++.
T Consensus 2 ~~v~~~lnkLs~~n~~~~~~~l~~~~~~~--~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~~~~~~f~~~ll~~~~~ 79 (200)
T smart00543 2 KKVKGLINKLSPSNFESIIKELLKLNNSD--KNLRKYILELIFEKAVEEPNFIPAYARLCALLNAKNPDFGSLLLERLQE 79 (200)
T ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999888653 344444 3568899999999999999999987 5677888888887
Q ss_pred HHHHHhcccccccChHHHHHHHhhhhhhhhhhhhcC
Q 000078 1047 NCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN 1082 (2405)
Q Consensus 1047 ~i~~LL~Se~~~~ssseRslLKNLGsWLG~iTLarN 1082 (2405)
.....+... ...++...+|+--+||.+..-+=
T Consensus 80 ~f~~~~e~~----~~~~~~~~~~~i~fl~eL~~~~~ 111 (200)
T smart00543 80 EFEKGLESE----EESDKQRRLGLVRFLGELYNFQV 111 (200)
T ss_pred HHHHHHHHH----HHHhhhhHHhHHHHHHHHHHccc
Confidence 776654432 34566677888888888775543
No 7
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=82.32 E-value=3.9 Score=52.78 Aligned_cols=128 Identities=21% Similarity=0.279 Sum_probs=92.0
Q ss_pred HHHHHHHHhhhhccchhhhHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhh
Q 000078 1301 IAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQ 1380 (2405)
Q Consensus 1301 ~AidRAIrEII~PVVeRSVtIA~iTT~eLV~KDFA~EpDE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si~~~Lr~~l~ 1380 (2405)
..+.-|-.. |.-+--| -||++-+-+.|.|||-+++.. +-.|.|...+.+=+++.|---||-.||.|-+|-+=.
T Consensus 240 Lglq~a~~k-I~GsnaR--CIa~L~afqevi~Dy~TP~~k----tlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~ 312 (556)
T KOG1467|consen 240 LGLQYALGK-ISGSNAR--CIAMLQAFQEVIKDYTTPPEK----TLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKN 312 (556)
T ss_pred HHHHHhhcc-cCCccHH--HHHHHHHHHHHHHhccCCCcc----ccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHH
Confidence 333333333 4444444 499999999999999999987 567788888888888777668999999999996622
Q ss_pred c---CC---Cc---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhh
Q 000078 1381 G---LT---IA---SELLEQAVQLVTNDNLDLGCAVIEQAATDKAI-----------QTIDGEIAQQLSLRRKHR 1435 (2405)
Q Consensus 1381 ~---~~---~~---~~~~Eq~i~~~vnDNldLac~iIEKaA~EKAi-----------~eIde~l~~~~~~RRkhr 1435 (2405)
. +. ++ ++.+-..|..-+++++.+|-..|-+.|.+|.- .-++..|..+-+.+++.|
T Consensus 313 eI~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~fr 387 (556)
T KOG1467|consen 313 EISKLPISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFR 387 (556)
T ss_pred HHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceE
Confidence 2 22 11 45556668889999999999999999999842 234555666665444444
No 8
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=80.19 E-value=5.4 Score=46.09 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=80.9
Q ss_pred hHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHH---HHhhhcccCCchhHHHHHHHHHhCch---hHHHHHHHHHHH
Q 000078 973 KISFIINNISALNVEAKAKEFTEILKEQYYPWFAQY---MVMKRASIEPNFHDLYLKFLDKVNSK---ALNREIVQATYE 1046 (2405)
Q Consensus 973 KI~FIiNNlS~~Nle~K~~Elke~L~e~y~~WFA~Y---LV~kRAsiEPNfH~LYl~fLd~l~~~---~L~~~Vl~eTy~ 1046 (2405)
||.-++|-+|..|++.-++++.+..... .++...+ ++.++|..+|+|..+|..++..+... .+-..+++.++.
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~-~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~~~ 81 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSD-DPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRCQE 81 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 6778999999999999999999998776 4454444 34678999999999999999998743 556666666666
Q ss_pred HHHHHh-cccccccChHHHHHHHhhhhhhhhhhhhc
Q 000078 1047 NCKVLL-GSELIKSSSEERSLLKNLGSWLGKLTIGR 1081 (2405)
Q Consensus 1047 ~i~~LL-~Se~~~~ssseRslLKNLGsWLG~iTLar 1081 (2405)
.+.... ..+.......++...+|+.-+||.+....
T Consensus 82 ~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~ 117 (209)
T PF02854_consen 82 EFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFG 117 (209)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhc
Confidence 555411 01222345678888999999999987643
No 9
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=38.60 E-value=2e+02 Score=30.54 Aligned_cols=71 Identities=15% Similarity=0.322 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000078 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (2405)
Q Consensus 686 sI~eiv~~L~r~K~S~~~rdqdvFaCMIh~LFdEYrFF~~YP~~eL~iTAvLFG~lI~~~Lv~~~~L~iALr~ILeAlrk 765 (2405)
..+|.+..+++++-+ ....++..-+|+..+|+ =..+-..++.|+..+++.++++...+.-|+.-+++.+.+
T Consensus 17 d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~-------~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~D 87 (113)
T PF02847_consen 17 DVDEAVECLKELKLP--SQHHEVVKVILECALEE-------KKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLESLED 87 (113)
T ss_dssp -HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTS-------SHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhh
Confidence 678888888887666 56677888888888887 355566799999999999999999999998888877654
No 10
>COG5088 SOH1 Rad5p-binding protein [General function prediction only]
Probab=36.20 E-value=77 Score=33.39 Aligned_cols=89 Identities=24% Similarity=0.339 Sum_probs=66.1
Q ss_pred ccHHHHHHHHHHHhhhcchhHhHHHHHhhhcccCCchhHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhcccccccChHH
Q 000078 984 LNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEE 1063 (2405)
Q Consensus 984 ~Nle~K~~Elke~L~e~y~~WFA~YLV~kRAsiEPNfH~LYl~fLd~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ssse 1063 (2405)
+-+|-.++=+.-+-.+.|..|+++.=.-+ -+|| .-|++.++--.+|+--++|+--|.--|-.||++......-+|
T Consensus 15 sRFE~ELEFvQ~L~Np~Yl~~Ltq~~~fe----se~F-~~YL~YlEYWr~PeYs~fivYP~CL~iL~lLn~~~~~~~vs~ 89 (114)
T COG5088 15 SRFEVELEFVQSLANPQYLTLLTQQQIFE----SENF-KNYLKYLEYWRNPEYSQFIVYPNCLFILKLLNGFMESAIVSE 89 (114)
T ss_pred chhHHHHHHHHHhcCHHHHHHHHHhhhhc----CHHH-HHHHHHHHHhhCCcccceeechhHHHHHHHhcchhHhhhhhh
Confidence 34444443333444678888888754433 2444 459999999999999999887777778889999888777889
Q ss_pred HHHHHhhh-----hhhhhh
Q 000078 1064 RSLLKNLG-----SWLGKL 1077 (2405)
Q Consensus 1064 RslLKNLG-----sWLG~i 1077 (2405)
-.++|.|| -|||+.
T Consensus 90 ~~l~~~l~e~qy~~Wlnk~ 108 (114)
T COG5088 90 DGLLEGLDELQYPQWLNKM 108 (114)
T ss_pred hHHHHhhhHHHHHHHHHHH
Confidence 99999998 488865
No 11
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.92 E-value=3e+02 Score=36.77 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=23.9
Q ss_pred hhccCCChhhHHHHHHHHHHHHHHHhh
Q 000078 1331 LKDYAMESDETRIYNAAHLMVASLAGS 1357 (2405)
Q Consensus 1331 ~KDFA~EpDE~kmr~AAh~MVr~LAgS 1357 (2405)
.+-|++.+||+.||.=...|-+.|-+=
T Consensus 404 ~~G~~L~~~EE~Lr~Kldtll~~ln~P 430 (508)
T KOG3091|consen 404 KRGYALTPDEEELRAKLDTLLAQLNAP 430 (508)
T ss_pred ccCCcCCccHHHHHHHHHHHHHHhcCh
Confidence 678999999999999999998887654
No 12
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=27.61 E-value=97 Score=39.61 Aligned_cols=61 Identities=25% Similarity=0.461 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHhhhhhhcCCCCCchHHHHHHhHHHHHHHHH------------hcchhHHHHHhHhhhccCCCCCcc
Q 000078 2072 GWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLL------------HDFPEFLCDYHFTFCDVIPPSCIQ 2139 (2405)
Q Consensus 2072 GW~~~~~LL~~ll~Fl~~~L~~~~ls~~i~~lYkGtLRilLvLl------------HDfPEFL~~yh~~lc~~IP~~ciQ 2139 (2405)
-|..+..+|-+++++.+||-- ..++|+||..+-... +|||+||-. -+-++.-
T Consensus 127 ~l~~v~~~l~~~lr~fGpF~s--------~~IikSTLdFv~g~~iEq~nf~~~p~A~~fP~ylR~-----ksGl~E~--- 190 (357)
T cd00686 127 WWALVNEHFPNVLRHFGPFCS--------LNLIRSTLDFFEGCWIEQYNFGGFPGSHDYPQFLRR-----MNGLGHC--- 190 (357)
T ss_pred HHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHhhhccCCCCCCcccchHHHh-----ccCCcce---
Confidence 377777888888888888865 568899998865442 488888743 3334332
Q ss_pred cccceecccCCC
Q 000078 2140 MRNIILSAFPRN 2151 (2405)
Q Consensus 2140 LRNlILSA~P~~ 2151 (2405)
.-.+.||+.
T Consensus 191 ---yA~FiFPk~ 199 (357)
T cd00686 191 ---VGASLWPKE 199 (357)
T ss_pred ---eEEEecchh
Confidence 356778875
No 13
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=27.22 E-value=1.2e+02 Score=30.96 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=46.1
Q ss_pred CcHHHHHHHHHhhhhhchHHHHHHHHHHHhhccchhhHHHhhhhcccccCCCCCCCchHHHHHHH
Q 000078 7 TVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVAS 71 (2405)
Q Consensus 7 ~~~~qi~~l~~~~~~~n~~~~~~e~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ll~~ 71 (2405)
+...+|+.+++.+.+++|+.++..+.+++.-|+.+.- +++.+.+.+--. +.++.+|..++..
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~-Il~~l~~~l~~~--~~~~~~k~~i~~~ 64 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELLVEGYSASD-ILKQLHEVLVES--DIPDSQKAEILKI 64 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHH-HHHHHHHHHHTS--TSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHh--hccHHHHHHHHHH
Confidence 3467899999999999999999999999977999985 888888766433 4556667665543
No 14
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.05 E-value=4.3e+02 Score=28.09 Aligned_cols=71 Identities=13% Similarity=0.279 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000078 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (2405)
Q Consensus 686 sI~eiv~~L~r~K~S~~~rdqdvFaCMIh~LFdEYrFF~~YP~~eL~iTAvLFG~lI~~~Lv~~~~L~iALr~ILeAlrk 765 (2405)
..+|.+..+++++-+ ....++....|+--+||= .++-..++.|+..+.+.++++...+.-|+.-+++.+.+
T Consensus 17 D~~ea~~~l~~L~~~--~~~~~vv~~~i~~~le~~-------~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~d 87 (113)
T smart00544 17 DTDEAVHCLLELKLP--EQHHEVVKVLLTCALEEK-------RTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIED 87 (113)
T ss_pred CHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCC-------ccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChh
Confidence 678888888888766 478889999999989982 34566699999999999999999999999999888876
Done!