Query 000078
Match_columns 2405
No_of_seqs 213 out of 285
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 13:27:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b8b_A General negative regula 100.0 5.3E-78 1.8E-82 750.5 35.8 480 314-818 89-596 (603)
2 4gmj_A CCR4-NOT transcription 100.0 1.2E-73 4E-78 649.0 22.9 201 966-1166 3-221 (229)
3 4b89_A General negative regula 100.0 2.1E-73 7.2E-78 649.1 18.1 204 960-1165 24-243 (249)
4 3rk6_A Polyadenylate-binding p 81.7 4.8 0.00016 47.1 10.3 164 967-1145 16-232 (234)
5 1hu3_A EIF4GII; heat repeat, t 58.0 30 0.001 40.9 9.9 176 968-1145 9-235 (260)
6 2vso_E Eukaryotic initiation f 49.2 11 0.00038 45.2 4.3 68 965-1033 31-105 (284)
7 1h2v_C 80 kDa nuclear CAP bind 33.8 94 0.0032 42.4 9.9 224 2075-2357 352-631 (771)
8 2rg8_A Programmed cell death p 24.7 3E+02 0.01 30.4 10.2 89 666-765 6-94 (165)
9 1x5b_A Signal transducing adap 19.1 5.1E+02 0.017 28.4 10.7 94 2285-2384 47-146 (163)
10 2ion_A PDCD4, programmed cell 18.7 4E+02 0.014 28.9 9.6 90 667-765 6-95 (152)
No 1
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=5.3e-78 Score=750.51 Aligned_cols=480 Identities=21% Similarity=0.338 Sum_probs=376.1
Q ss_pred HHHHHHHhhCC-CCCHHHHHHhc-----CCCCCCCCChhhHHHHHHHHhhhcCCCccccccccCccc-CchhhHHHHHHH
Q 000078 314 VLVKAIKQLAP-NTNWIRVVENL-----DYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWK-NTEGQLSFLRYA 386 (2405)
Q Consensus 314 v~v~alk~~~p-~lnW~~Vi~~l-----D~~~f~i~d~~~l~ll~~~~~~~~~~~Fpi~~l~~~~W~-N~~~Qlsfl~~~ 386 (2405)
-+-.+++.+.. ++||.+|+..+ |. .-.-|+..++.-+++++..+ =+|+.++...|. .=.-.|.++-|-
T Consensus 89 q~~~~~~~~~~~~inW~~vFnlms~~~f~~-~~~~pt~asls~~~~~L~~~----~liD~F~~~dw~~~f~~~l~~~L~~ 163 (603)
T 4b8b_A 89 VIARSISSLQANQINWNRVFNLMSTKYFLS-APLMPTTASLSCLFAALHDG----PVIDEFFSCDWKVIFKLDLAIQLHK 163 (603)
T ss_dssp HHHHHHHTSCGGGSCHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHCSH----HHHHHHHHSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccccCHHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHcCCC----chHHHHHcCcchHhHhHHHHHHHHh
Confidence 34466777755 89999999875 33 22345667777788877642 456666655664 344455555555
Q ss_pred hhCCCcccccCcCc-cccccccCCCCccccccccccccc---hHHHHHHHHH---hhhcCchHHHHHHhhhhhhcChhHH
Q 000078 387 VASPPEVFTFAHSA-RQLPYVDAVPGLKLQSGQANHAWL---CLDLLDVLCQ---LSEMGHASFARSMLEYPLKQCPEML 459 (2405)
Q Consensus 387 l~~p~~~f~f~~~~-~~~v~~d~~~~~~~~~~~~~~~W~---sldLie~L~~---Lae~~~~~~v~~l~~~p~~~~pe~l 459 (2405)
.+..-.-||+..++ -+.++- ..++.+ ...=.+. +||+ +.+.. ++++..-....+.|+.-.+..||.+
T Consensus 164 ~~~~qg~~dl~~~~~~~~~~~-~~p~~~----~~ll~~~si~~l~l-~~~~~~~~~~~~~~~~~~~~~f~~d~~~~Peyl 237 (603)
T 4b8b_A 164 WSVQNGCFDLLNAEGTRKVSE-TIPNTK----QSLLYLLSIASLNL-ELFLQREELSDGPMLAYFQECFFEDFNYAPEYL 237 (603)
T ss_dssp CCTTTTCCCGGGCTTCCBSCS-SSCCCS----CCGGGBHHHHHHHH-HHHHTTTTSCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred cCccCCchhhhcCCCceeccc-CCCCcc----cceeeeeehhhhhH-HHHHHHHHhccchhHHHHHHHHhhhhccCHHHH
Confidence 54323346666666 333442 222211 0111122 3333 22222 2222123456789999999999999
Q ss_pred HHHhhccCcch------hHHHHHHHHhhhHHHHcCCCch-HHHHHHHhhCChhHHHHHHHhhhcCCccHHHHHHHHHHhh
Q 000078 460 LLGMAHINTAY------NLIQYEVSFAVFPMIIKSTMSN-GMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELK 532 (2405)
Q Consensus 460 llgl~~i~~~~------~~l~~ell~~lf~~fl~~~~~~-~vi~~lW~~~~~~~~~~l~d~y~~d~~~l~rIldvaqelk 532 (2405)
.+++..-.+.| ..+.+|++-.||-..+...+.+ .-+.+.+. ++.-++......+++|+.+++|++|||+|+|
T Consensus 238 al~~~~~~k~~~~~~en~~~i~~l~~~l~~~~~~~~~~~l~~~i~~~~-~~~k~~~~~~~Ii~kD~~~l~rildi~~elk 316 (603)
T 4b8b_A 238 ILALVKEMKRFVLLIENRTVIDEILITLLIQVHNKSPSSFKDVISTIT-DDSKIVDAAKIIINSDDAPIANFLKSLLDTG 316 (603)
T ss_dssp HHHHHHTHHHHHHHHCCHHHHHHHHHHHHHHHHHSCGGGHHHHHHHCC-CHHHHHHHHHHHHHHSCSCCSHHHHHHHHTT
T ss_pred HHHHHhhccccccccccchHHHHHHHHHHHHHHhcChHHHHHHHHHcc-ChhHHHHHHHHHHhcCchhHHHHHHHHHHhC
Confidence 77776544444 4566788888887766444333 23334444 4445558888889999999999999999999
Q ss_pred hHHHHhhcCCchhHHHHHHHhhcccccCHHHHHHHHhhcCcchHHHHHHHHHHHHhhcccccccCCCCCCCcccccccch
Q 000078 533 ILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYME 612 (2405)
Q Consensus 533 ~L~~ll~~~p~~f~idLA~lAsrre~l~lekWL~~~l~~~~~~f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~e 612 (2405)
||+.||+..||+||+|+|++|+||||+|||+|++++++.+|.+ +|++||+.|+..+. +.. +.++..+|.++
T Consensus 317 ~L~~lL~~~p~~faldLAalAs~rg~lnLe~WL~~~l~~~~~~---~lL~FL~~K~~~e~----~~~--~~~~~~~L~i~ 387 (603)
T 4b8b_A 317 RLDTVINKLPFNEAFKILPCARQIGWEGFDTFLKTKVSPSNVD---VVLESLEVQTKMTD----TNT--PFRSLKTFDLF 387 (603)
T ss_dssp CHHHHHHHSCTTHHHHTHHHHHHHTCCCHHHHHHHHCCTTTHH---HHHHHHHHHHHCCC----C----CSCTTTSCCHH
T ss_pred hHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHhhcCch---HHHHHHHHHhhccc----cCC--CCCCCceecHH
Confidence 9999999999999999999999999999999999999999976 99999999997651 111 22233568889
Q ss_pred hHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCC-CCCC-----CCCCCChhhHHHHHHHHHHHHhccCCC
Q 000078 613 KIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGE-AADS-----STSEGYADDIEAEANSYFHQMFSGQLT 686 (2405)
Q Consensus 613 tv~~ll~~L~~~~~~~~s~~l~e~l~~v~~~~i~~~PRL~n~~-~~d~-----~~~~~f~~dIE~Ean~yfqkmYs~eis 686 (2405)
|+++||++|++. .++++.+|+++++|+.|+++||||+|++ |+|+ +.++.|++|||+|||+||||||++++|
T Consensus 388 tv~~lLk~L~~~---~l~~e~~e~l~~vq~~~lq~yPRLiN~G~G~D~~i~an~~~~~~~~dIE~ean~yfqkmY~~eis 464 (603)
T 4b8b_A 388 AFHSLIEVLNKC---PLDVLQLQRFESLEFSLLIAFPRLINFGFGHDEAILANGDIAGINNDIEKEMQNYLQKMYSGELA 464 (603)
T ss_dssp HHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHCGGGTTTTSSCHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHhCchhhcCCCcchhhhhccCCCCCCCHHHHHHHHHHHHHHHcCCCC
Confidence 999999999864 4577889999999999999999999986 5554 456789999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCC
Q 000078 687 IEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKP 766 (2405)
Q Consensus 687 I~eiv~~L~r~K~S~~~rdqdvFaCMIh~LFdEYrFF~~YP~~eL~iTAvLFG~lI~~~Lv~~~~L~iALr~ILeAlrkp 766 (2405)
|+++|++|+|||+|+++||||||+||||+||||||||++||++||++||+|||+||+|+||++.+|++||||||||+|+|
T Consensus 465 I~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~Ll~~~~L~iALr~ILeAlrkp 544 (603)
T 4b8b_A 465 IKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRGFVLDVAFRIIMRFAKEP 544 (603)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHhhhhhhHHHHHHh-cccccccccHHHHHHHHHHHH
Q 000078 767 ADSKMFVFGTKALEQFVDRLIEWPQYCNHIL-QISHLRSTHAELVAFIERALA 818 (2405)
Q Consensus 767 ~~SkMf~FGiqAL~qF~~RL~EwPqyC~~Ll-qIp~L~~~~p~l~~~ie~~l~ 818 (2405)
++||||+||++||+||++||+||||||.+|+ +|||| +++|+||+.|+++..
T Consensus 545 ~~skmf~FGi~ALeqF~~RL~ewPqyc~~lL~~ip~l-q~~P~l~q~i~~~a~ 596 (603)
T 4b8b_A 545 PESKMFKFAVQAIYAFRIRLAEYPQYCKDLLRDVPAL-KSQAQVYQSIVEAAT 596 (603)
T ss_dssp TTSHHHHHHHHHHHHTGGGGGGCHHHHHHHHHHCGGG-GGCHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc-ccChHHHHHHHHHHc
Confidence 9999999999999999999999999997766 79999 588999999988765
No 2
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=100.00 E-value=1.2e-73 Score=648.95 Aligned_cols=201 Identities=48% Similarity=0.855 Sum_probs=198.8
Q ss_pred CChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHHhhhcccCCchhHHHHHHHHHhCchhHHHHHHHHHH
Q 000078 966 PASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATY 1045 (2405)
Q Consensus 966 Ppe~vqDKI~FIiNNlS~~Nle~K~~Elke~L~e~y~~WFA~YLV~kRAsiEPNfH~LYl~fLd~l~~~~L~~~Vl~eTy 1045 (2405)
++|+|||||+|||||+|++|+++|++|+|++|+++|++|||+|||+||||+|||||+||++|+++++++.|+++|+++||
T Consensus 3 ~de~v~dki~Fi~NNls~~N~~~k~~elk~~l~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~~l~~~vl~~T~ 82 (229)
T 4gmj_A 3 LEENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETY 82 (229)
T ss_dssp SCHHHHHHHHHHHHSCCSSTHHHHHHHHHHHSCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHhhhhheeehhcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccChHHHHHHHhhhhhhhhhhhhcCcccccCCCChhHHHHH------------------HHhcccccc
Q 000078 1046 ENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIE------------------ILEPCQSSL 1107 (2405)
Q Consensus 1046 ~~i~~LL~Se~~~~ssseRslLKNLGsWLG~iTLarNkPI~~k~id~K~LLlE------------------VLe~~~~Sk 1107 (2405)
++|++||+|++++.+++||++|||||+|||+|||||||||+||+||+|+||+| ||++|++|+
T Consensus 83 ~~i~~LL~s~~~~~~~~eR~~LKNLG~WLG~lTLarnkPI~~~~l~~K~LL~eay~~g~~rL~~viPFVcKvLe~~~~S~ 162 (229)
T 4gmj_A 83 RNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSV 162 (229)
T ss_dssp HHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCCCTTTCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCT
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHccCCCchhcccCHHHHHHHHHHCCCceEEEeehhHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999999999998 999999999
Q ss_pred cccCCChhHHHHHHHHHHHhcCCcccchhHHHHHHHhhhcCCCccccccccccccchhh
Q 000078 1108 AYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKRE 1166 (2405)
Q Consensus 1108 VFkPPNPWtm~IL~LL~ELy~~~dLKLNLKFEIEVLcK~L~ldl~diePs~~L~~r~~~ 1166 (2405)
|||||||||||||++|+|||++||||+|||||||||||+|++|++||+|+++|++|++.
T Consensus 163 iFkPPNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~l~~~~~~i~ps~~l~~~~~~ 221 (229)
T 4gmj_A 163 VFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRL 221 (229)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCCGGGSCCCSGGGCSTTG
T ss_pred cCCCCChhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHcCCChhhcCchhhhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999874
No 3
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=100.00 E-value=2.1e-73 Score=649.12 Aligned_cols=204 Identities=34% Similarity=0.651 Sum_probs=195.4
Q ss_pred CCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHHhhhcccCCchhHHHHHHHHHhCchhHHHH
Q 000078 960 ETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNRE 1039 (2405)
Q Consensus 960 ~~~~e~Ppe~vqDKI~FIiNNlS~~Nle~K~~Elke~L~e~y~~WFA~YLV~kRAsiEPNfH~LYl~fLd~l~~~~L~~~ 1039 (2405)
...+|+|||+|+|||+|||||+|++|+++|++|+|++|+++||+|||+|||++|||+|||||+||++|+++++++.|+++
T Consensus 24 ~~~~e~P~~~v~dki~Fi~NNls~~Nl~~k~~el~~~l~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~~~L~~~ 103 (249)
T 4b89_A 24 QINQEGAPKDVVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSGLLHQF 103 (249)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHCCTTTHHHHHHHHHHHCCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHH
T ss_pred CccCCCcCHHHHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCCHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccChHHHHHHHhhhhhhhhhhhhcCcccccCCCChhHHHHH----------------HHhcc
Q 000078 1040 IVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIE----------------ILEPC 1103 (2405)
Q Consensus 1040 Vl~eTy~~i~~LL~Se~~~~ssseRslLKNLGsWLG~iTLarNkPI~~k~id~K~LLlE----------------VLe~~ 1103 (2405)
|+++||++|++||+++++ +++||++|||||+|||+|||||||||+||+||+|+||+| ||++|
T Consensus 104 vl~~T~~~i~~LL~~~~i--~~~eRs~LKNLG~WLG~iTLarNkPI~~~~ld~K~LL~eay~~g~L~~vIPFVcKvLe~~ 181 (249)
T 4b89_A 104 MVNVTLRQLFVLLSTKDE--QAIDKKHLKNLASWLGCITLALNKPIKHKNIAFREMLIEAYKENRLEIVVPFVTKILQRA 181 (249)
T ss_dssp HHHHHHHHHHHHHTBSCG--GGSCHHHHHHHHHHHHHHTGGGTCCCCTTTBCHHHHHHHHHHHTCHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhhccc--ChHHHHHHHHHHHHHhHHHHhcCCCchhcccCHHHHHHHHHHcCCeEEEeeHHHHHHHhc
Confidence 999999999999999876 478999999999999999999999999999999999999 99999
Q ss_pred cccccccCCChhHHHHHHHHHHHhcCCcccchhHHHHHHHhhhcCCCccccccccccccchh
Q 000078 1104 QSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1165 (2405)
Q Consensus 1104 ~~SkVFkPPNPWtm~IL~LL~ELy~~~dLKLNLKFEIEVLcK~L~ldl~diePs~~L~~r~~ 1165 (2405)
++|+||||||||||+||++|+|||++||||+|||||||||||+|++|++||+||++|+++++
T Consensus 182 k~SkiFkPPNPWt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~l~l~l~~i~ps~~l~~~~~ 243 (249)
T 4b89_A 182 SESKIFKPPNPWTVGILKLLIELNEKANWKLSLTFEVEVLLKSFNLTTKSLKPSNFINTPEV 243 (249)
T ss_dssp TTCSSSSTTCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCGGGSCCCCCC-----
T ss_pred ccCCccCCCCchHHHHHHHHHHHHhCcchhHhHHHHHHHHHHHcCCChHhCCcccccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999998765
No 4
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=81.69 E-value=4.8 Score=47.14 Aligned_cols=164 Identities=16% Similarity=0.248 Sum_probs=105.6
Q ss_pred ChhhhHhHhhhhhcCC--cccHHHHHHHHHHHhh-----hcchhHhHHHHHhhhcccCCchhHHHHHHHHHhCc-----h
Q 000078 967 ASEVQDKISFIINNIS--ALNVEAKAKEFTEILK-----EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNS-----K 1034 (2405)
Q Consensus 967 pe~vqDKI~FIiNNlS--~~Nle~K~~Elke~L~-----e~y~~WFA~YLV~kRAsiEPNfH~LYl~fLd~l~~-----~ 1034 (2405)
++++..||.-|+|-|| ++|++.-++++.+.+. ++...-+..- |.+.|-.||||-.+|.++...+.. +
T Consensus 16 ~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~l-IfekAi~ep~fs~~YA~LC~~l~~~l~~~~ 94 (234)
T 3rk6_A 16 GSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVEL-IYQQATSIPNFSYMGARLCNYLSHHLTISP 94 (234)
T ss_dssp --CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHH-HHHHHHSSTTCHHHHHHHHHHHHHHCCCCC
T ss_pred hHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHHHHhCcccHHHHHHHHHHHHHhcCCCC
Confidence 5789999999999999 9999999999888753 2344455554 445588999999999999998865 2
Q ss_pred h---HHHHHH---HHHHHHHHHHhcccccccChHHHHHHHhhhh--hhhhhhhhcC------cccccCCC---ChhHHHH
Q 000078 1035 A---LNREIV---QATYENCKVLLGSELIKSSSEERSLLKNLGS--WLGKLTIGRN------QVLRAREI---DPKSLII 1097 (2405)
Q Consensus 1035 ~---L~~~Vl---~eTy~~i~~LL~Se~~~~ssseRslLKNLGs--WLG~iTLarN------kPI~~k~i---d~K~LLl 1097 (2405)
. +.+..| ++.|++-.....+| ++.--+-+|. ++|-+-.-.+ +++. -.| .+++||-
T Consensus 95 ~~~~Fr~lLL~rcQ~eFe~~~~~~~~d-------~~~k~r~lg~i~FIgELf~~l~~~~~~~~~l~-e~I~~~ci~~Ll~ 166 (234)
T 3rk6_A 95 QSGNFRQLLLQRCRTEYEVKDQAAKGD-------EVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR-ADILQVGLRELLN 166 (234)
T ss_dssp TTCCHHHHHHHHHHHHHTTHHHHTSSC-------HHHHHHHHHHHHHHHHHHHHCCEECTTSSEEC-CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhhHHhhhcc-------HHHHHHHHHHHHHHHHHHhhhcccccccchhH-HHHHHHHHHHHHH
Confidence 1 334433 23344433222222 2222333443 6777765422 3332 222 2455443
Q ss_pred H----------------------HHhcc--cccccccCCChhHHHHHHHHHHHhcCCcccchhHHHHHHHhh
Q 000078 1098 E----------------------ILEPC--QSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFK 1145 (2405)
Q Consensus 1098 E----------------------VLe~~--~~SkVFkPPNPWtm~IL~LL~ELy~~~dLKLNLKFEIEVLcK 1145 (2405)
. .|+.. .++ .++.-.++.-|.++.+.+++--.++|=|+.|+.
T Consensus 167 ~l~~~p~ee~vE~l~~lL~tvG~~Ld~~~~~~~------~~~md~~f~rl~~i~~~~~ls~Rirfml~dlie 232 (234)
T 3rk6_A 167 ALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKG------KMDMEEIIQRIENVVLDANCSRDVKQMLLKLVE 232 (234)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHTT------CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred hccCCCChHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 2 56643 122 257888999999999889998899999988864
No 5
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=58.01 E-value=30 Score=40.89 Aligned_cols=176 Identities=16% Similarity=0.156 Sum_probs=98.2
Q ss_pred hhhhHhHhhhhhcCCcccHHHHHHHHHHHhh--hcchhHhHHHHHhhhcccCCchhHHHHHHHHHhCc---hh-------
Q 000078 968 SEVQDKISFIINNISALNVEAKAKEFTEILK--EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNS---KA------- 1035 (2405)
Q Consensus 968 e~vqDKI~FIiNNlS~~Nle~K~~Elke~L~--e~y~~WFA~YLV~kRAsiEPNfH~LYl~fLd~l~~---~~------- 1035 (2405)
+.+..+|.-++|-||++|++.=+.++.++-- ++-..=+ --+|.++|-.||+|=.+|.+|+..|.. |.
T Consensus 9 ~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~v-i~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~~~~~ 87 (260)
T 1hu3_A 9 QELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGV-IDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNT 87 (260)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHH-HHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC--------
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcccCCccc
Confidence 6788999999999999999998888765311 1111112 136888999999999999999999975 11
Q ss_pred --HHHHHH---HHHHHHHHHHhc--ccccc-----cChHHH---------------HHHHhhhhhhhhhhhhcCcccccC
Q 000078 1036 --LNREIV---QATYENCKVLLG--SELIK-----SSSEER---------------SLLKNLGSWLGKLTIGRNQVLRAR 1088 (2405)
Q Consensus 1036 --L~~~Vl---~eTy~~i~~LL~--Se~~~-----~ssseR---------------slLKNLGsWLG~iTLarNkPI~~k 1088 (2405)
+-+.+| ++.|++...-.. .++.+ ..+.|| ..--|+-.++|-+-.-+=-+-+.=
T Consensus 88 ~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~~i~ 167 (260)
T 1hu3_A 88 VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIM 167 (260)
T ss_dssp -CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCHHHH
T ss_pred hHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCHHHH
Confidence 223333 223333211000 00000 112222 222256667777664321110000
Q ss_pred CCChhHHHH-------H----HHhcccccccccC-CChhHHHHHHHHHHHhcCCcccchhHHHHHHHhh
Q 000078 1089 EIDPKSLII-------E----ILEPCQSSLAYQP-PNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFK 1145 (2405)
Q Consensus 1089 ~id~K~LLl-------E----VLe~~~~SkVFkP-PNPWtm~IL~LL~ELy~~~dLKLNLKFEIEVLcK 1145 (2405)
.-.++.||- | +|..|...- .++ +.+.+-.++.-|.++-+.+++---.+|=||.++.
T Consensus 168 ~~~l~~Ll~~~~e~~iE~l~~lL~tvG~~L-~~~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~d 235 (260)
T 1hu3_A 168 HDCVVKLLKNHDEESLECLCRLLTTIGKDL-DFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVID 235 (260)
T ss_dssp HHHHHHHHHSCSHHHHHHHHHHHHHHHHHH-CCTTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 001222221 1 555554432 232 3357778888888888888888888899988874
No 6
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=49.23 E-value=11 Score=45.20 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=53.6
Q ss_pred CCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhc-------chhHhHHHHHhhhcccCCchhHHHHHHHHHhCc
Q 000078 965 APASEVQDKISFIINNISALNVEAKAKEFTEILKEQ-------YYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNS 1033 (2405)
Q Consensus 965 ~Ppe~vqDKI~FIiNNlS~~Nle~K~~Elke~L~e~-------y~~WFA~YLV~kRAsiEPNfH~LYl~fLd~l~~ 1033 (2405)
...+++.-||.-|+|-||++|++.=+.+|.++-... -..=+. -+|.+.|-.||+|=.+|.+|+..|..
T Consensus 31 ~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi-~~If~kA~~ep~fs~~YA~Lc~~l~~ 105 (284)
T 2vso_E 31 LDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVI-EQIFLKACDEPHWSSMYAQLCGKVVK 105 (284)
T ss_dssp CCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHH-HHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHH-HHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 456889999999999999999999999998775321 111132 25677899999999999999988653
No 7
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=33.82 E-value=94 Score=42.42 Aligned_cols=224 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCCchHHHHHH--------hHHHHHHHHHhcchhH-------------------------
Q 000078 2075 YIQRLLVNLLQFLEPFLRNAELGVPVRFLYK--------GTLRVLLVLLHDFPEF------------------------- 2121 (2405)
Q Consensus 2075 ~~~~LL~~ll~Fl~~~L~~~~ls~~i~~lYk--------GtLRilLvLlHDfPEF------------------------- 2121 (2405)
.|+.|++.|.| +.|-.=..-+..+++.+|+ -.-|+.--..|=+--|
T Consensus 352 yY~sll~eLCk-l~P~~~~~v~~~ai~~lY~~i~~md~e~~~Rf~dwFShhLSNF~f~W~W~eW~~~~e~~~~~p~r~Fi 430 (771)
T 1h2v_C 352 MYTTLLIELCK-LQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFV 430 (771)
T ss_dssp HHHHHHHHHHH-HSTTTHHHHHHHHHHHHHHTGGGBCHHHHHHHHHHHHHHHTTTTTCCCGGGGGGGTTSCTTSHHHHHH
T ss_pred HHHHHHHHHHH-hChHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhcCCcCccHHHhHHhhcCCccCcHHHHH
Q ss_pred ---------HHHHhHhhhccCCCCCcccccceecccCCCCCCCCCCCCCCCCCCCcCccCCCccccchHHHHHHhhhhHH
Q 000078 2122 ---------LCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRAD 2192 (2405)
Q Consensus 2122 ---------L~~yh~~lc~~IP~~ciQLRNlILSA~P~~mrLPDPftp~Lkvd~lpEi~~~P~I~~d~~~~L~~~~lk~~ 2192 (2405)
| .||-.+-+.+|+.+.+| +|.+..|+.|.+ -++-...|- ..+-..
T Consensus 431 k~ll~k~~RL-Sy~~rIk~~lP~~~~~l-------------lp~~p~p~f~y~-~e~~~~~p~-----------~~~a~~ 484 (771)
T 1h2v_C 431 REVLEKCMRL-SYHQRILDIVPPTFSAL-------------CPSNPTCIYKYG-DESSNSLPG-----------HSVALC 484 (771)
T ss_dssp HHHHHHHHHT-SCHHHHHTTSCGGGGGG-------------SCCCCCCCCTTS-TTSCTTSTT-----------HHHHHH
T ss_pred HHHHHHHHhh-hhHHHHHHhCcHHHHhh-------------CCCCCCCCceeC-CccccCCcc-----------hHHHHH
Q ss_pred HHHHhccCCCCcchHHHHHHHccCCccccccC-CccccHhHHHHHHHHHHHHHHHhhhccCCcccccCCCCchhhhhhhh
Q 000078 2193 VDDYLKTGQPGSSFLSELKQKLLLPPSEAASA-GTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSA 2271 (2405)
Q Consensus 2193 vD~yL~~r~~~~~~l~~i~~~L~~~~~~~~~~-g~~yN~~liNAlVLyVG~~Ai~~~~~~~~~~~~~~~~~~~~~f~~s~ 2271 (2405)
+-++++.+.+...+...|++ +..+..+.... +..+|.-.++.+| +++-.+.+|+-+-.++.. +-
T Consensus 485 l~~~ir~k~~~eei~~~l~~-i~~~~~~~~~~~~~~~~~~~i~v~~-----q~ll~~GskS~SH~~~~l---------er 549 (771)
T 1h2v_C 485 LAVAFKSKATNDEIFSILKD-VPNPNQDDDDDEGFSFNPLKIEVFV-----QTLLHLAAKSFSHSFSAL---------AK 549 (771)
T ss_dssp HHHHHHTTCCHHHHHHHGGG-CC-------------CCHHHHHHHH-----HHHHHHSTTCHHHHHHHH---------HH
T ss_pred HHHHHHccCCHHHHHHHHHh-chhcccccccccccccchHHHHHHH-----HHHHHhccchHHHHHHHH---------HH
Q ss_pred HHHHHHHHHhccChhhHHHHHHHHHhhhcCCCchhHHHHH-------------HHHHHhhcccchhhHHHHHHHHHHHhc
Q 000078 2272 ALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSF-------------VLLYLYAEANQEIIQEQITRVLFERLI 2338 (2405)
Q Consensus 2272 ~~~il~~L~~~ld~EgRY~ll~aiaNQLRYPNsHT~yFS~-------------~lL~LF~~~~~~~IqEqItRVLLERLI 2338 (2405)
+.+.|..|+. +.|+|..+|.++..--+. |.+.-+=.. ++-++|++......
T Consensus 550 y~~~lk~l~~--~~~~q~~il~~v~~~W~~-~~q~~~ividkll~~~iv~p~~Vv~w~f~~~~~~~~------------- 613 (771)
T 1h2v_C 550 FHEVFKTLAE--SDEGKLHVLRVMFEVWRN-HPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDF------------- 613 (771)
T ss_dssp THHHHHHHTS--SHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTSSCHHHHHHHHTSGGGTTTT-------------
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHHHhc-CCceEehHHHHHHhcCCCCHHHHHHHHcCchhhhHH-------------
Q ss_pred cCCCCchHHHHHHHHHhhC
Q 000078 2339 VNRPHPWGLLITFIELIKN 2357 (2405)
Q Consensus 2339 v~rPHPWGLliTfiELiKN 2357 (2405)
.++|.|-++-.-++-+++
T Consensus 614 -~~~~~weil~~ti~kv~~ 631 (771)
T 1h2v_C 614 -TRLFVWEILHSTIRKMNK 631 (771)
T ss_dssp -TSHHHHHHHHHHHHHHHH
T ss_pred -hhhhHHHHHHHHHHHHHH
No 8
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=24.67 E-value=3e+02 Score=30.37 Aligned_cols=89 Identities=10% Similarity=0.183 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhh
Q 000078 666 ADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQ 745 (2405)
Q Consensus 666 ~~dIE~Ean~yfqkmYs~eisI~eiv~~L~r~K~S~~~rdqdvFaCMIh~LFdEYrFF~~YP~~eL~iTAvLFG~lI~~~ 745 (2405)
.+++++++++..+..|+.. .++|.+.-++.++... .-..+....|..-||. + ++|=..+++|+-.+.. +
T Consensus 6 ~ee~~kk~~~ii~EYf~~~-D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldr-----k--~~ere~~s~LL~~L~~-~ 74 (165)
T 2rg8_A 6 ERAFEKTLTPIIQEYFEHG-DTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEG-----K--ASHREMTSKLLSDLCG-T 74 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTS-----C--HHHHHHHHHHHHHHBT-T
T ss_pred HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcC-----C--HHHHHHHHHHHHHHHH-C
Confidence 4688889998888888864 6899999999988432 3344555555555663 2 4555569999999965 9
Q ss_pred ccchhHHHHHHHHHHHHhcC
Q 000078 746 LVTHLTLGIALRGVLDALRK 765 (2405)
Q Consensus 746 Lv~~~~L~iALr~ILeAlrk 765 (2405)
+++.-.+.-|+..+++.+-+
T Consensus 75 ~ls~~~i~~Gf~~lle~ldD 94 (165)
T 2rg8_A 75 VMSTTDVEKSFDKLLKDLPE 94 (165)
T ss_dssp TBCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhChh
Confidence 99999999999999988764
No 9
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=19.10 E-value=5.1e+02 Score=28.40 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhcccchhhHHHH-HHHHHH---HhccCCCCchHHHHHHHHHhhCCCC
Q 000078 2285 TEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQI-TRVLFE---RLIVNRPHPWGLLITFIELIKNPRY 2360 (2405)
Q Consensus 2285 ~EgRY~ll~aiaNQLRYPNsHT~yFS~~lL~LF~~~~~~~IqEqI-tRVLLE---RLIv~rPHPWGLliTfiELiKNp~Y 2360 (2405)
++|--..+.||..-|.|+|.|+-+++-.||......-...++.+| .|-.++ |++..++|| -+---.+|||+.
T Consensus 47 ~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~-~Vk~kil~li~~--- 122 (163)
T 1x5b_A 47 PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHP-KVCEKLKSLMVE--- 122 (163)
T ss_dssp SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCH-HHHHHHHHHHHH---
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCH-HHHHHHHHHHHH---
Confidence 455566778899999999999999999999888764334444333 344443 445555777 466666777764
Q ss_pred ccccCCcCcc--hHHHHHHHHHHHHh
Q 000078 2361 NFWNQSFIRC--APEIEKLFESVARS 2384 (2405)
Q Consensus 2361 ~Fw~~~Fv~~--aPEIe~lF~svars 2384 (2405)
|...|-+. -+.|..+++.+-+.
T Consensus 123 --W~~~f~~~~~l~~i~~~Y~~Lk~~ 146 (163)
T 1x5b_A 123 --WSEEFQKDPQFSLISATIKSMKEE 146 (163)
T ss_dssp --HHHHTTTCSTTHHHHHHHHHHHTT
T ss_pred --HHHHhcCCcccHHHHHHHHHHHHc
Confidence 77766653 24578888888776
No 10
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=18.69 E-value=4e+02 Score=28.94 Aligned_cols=90 Identities=12% Similarity=0.160 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhc
Q 000078 667 DDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQL 746 (2405)
Q Consensus 667 ~dIE~Ean~yfqkmYs~eisI~eiv~~L~r~K~S~~~rdqdvFaCMIh~LFdEYrFF~~YP~~eL~iTAvLFG~lI~~~L 746 (2405)
+++++++++..+-.|+.. .++|.+.-++.++.. ..-.++-...|..-+|.- .+++-..++.|+-.+.+.++
T Consensus 6 eel~kki~~lL~EY~~~~-D~~EA~~cl~EL~~p--~f~~e~V~~~i~~alE~~------~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 6 NHLVKEIDMLLKEYLLSG-DISEAEHCLKELEVP--HFHHELVYEAIVMVLEST------GESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp CHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCC------SSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHCCC
Confidence 578889998888888864 689999999999753 233444444444445521 34666779999999999999
Q ss_pred cchhHHHHHHHHHHHHhcC
Q 000078 747 VTHLTLGIALRGVLDALRK 765 (2405)
Q Consensus 747 v~~~~L~iALr~ILeAlrk 765 (2405)
|+.-.+.-|+.-|++.+-+
T Consensus 77 is~~q~~~Gf~~vl~~ldD 95 (152)
T 2ion_A 77 ITIDQMKRGYERIYNEIPD 95 (152)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhChH
Confidence 9999999999999988754
Done!