Query 000079
Match_columns 2396
No_of_seqs 346 out of 1594
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 17:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1080 Histone H3 (Lys4) meth 100.0 1.5E-68 3.2E-73 677.2 18.0 935 717-1991 47-1004(1005)
2 KOG4442 Clathrin coat binding 100.0 2.5E-39 5.5E-44 392.8 13.1 169 1802-1997 94-265 (729)
3 KOG1082 Histone H3 (Lys9) meth 100.0 2.3E-28 5E-33 289.2 13.5 265 1693-1991 56-353 (364)
4 KOG1079 Transcriptional repres 99.8 7.5E-21 1.6E-25 231.9 10.5 114 1839-1971 601-714 (739)
5 KOG1083 Putative transcription 99.8 1.7E-21 3.7E-26 243.3 3.9 127 1826-1970 1172-1298(1306)
6 smart00317 SET SET (Su(var)3-9 99.8 7.5E-20 1.6E-24 177.8 13.3 114 1835-1965 3-116 (116)
7 KOG1141 Predicted histone meth 99.8 8E-19 1.7E-23 215.0 9.5 188 1802-1992 981-1262(1262)
8 KOG1085 Predicted methyltransf 99.6 1.6E-15 3.5E-20 172.3 9.3 116 1839-1968 263-379 (392)
9 COG2940 Proteins containing SE 99.5 1E-14 2.2E-19 179.1 3.4 142 1833-1991 333-479 (480)
10 PF00856 SET: SET domain; Int 99.3 1.9E-12 4.1E-17 130.3 6.1 54 1913-1966 109-162 (162)
11 KOG1081 Transcription factor N 98.8 1.3E-09 2.9E-14 134.5 1.5 122 1847-1995 319-440 (463)
12 KOG2589 Histone tail methylase 98.7 1.5E-08 3.2E-13 119.9 5.0 120 1841-1989 136-255 (453)
13 PF14237 DUF4339: Domain of un 97.4 0.00011 2.4E-09 65.2 3.5 45 996-1041 1-45 (45)
14 KOG1141 Predicted histone meth 97.0 0.00019 4.2E-09 91.6 0.0 60 1802-1870 774-835 (1262)
15 KOG2461 Transcription factor B 96.5 0.0027 5.8E-08 78.7 4.8 104 1841-1970 39-147 (396)
16 PF12937 F-box-like: F-box-lik 96.1 0.0032 7E-08 55.7 2.4 36 1206-1243 1-36 (47)
17 PF02213 GYF: GYF domain; Int 95.6 0.0069 1.5E-07 56.6 2.2 48 996-1043 2-53 (57)
18 cd00072 GYF GYF domain: contai 95.4 0.016 3.5E-07 54.7 3.9 50 996-1045 3-53 (57)
19 KOG4676 Splicing factor, argin 95.4 0.017 3.6E-07 70.7 4.9 9 64-72 30-38 (479)
20 KOG0147 Transcriptional coacti 93.6 0.13 2.8E-06 65.6 6.9 19 619-637 274-293 (549)
21 KOG4368 Predicted RNA binding 92.8 0.11 2.4E-06 66.1 4.6 14 365-378 562-575 (757)
22 PF14237 DUF4339: Domain of un 92.5 0.089 1.9E-06 47.2 2.5 44 642-686 1-44 (45)
23 KOG4368 Predicted RNA binding 91.9 0.17 3.8E-06 64.5 4.8 12 12-23 275-286 (757)
24 cd00072 GYF GYF domain: contai 91.9 0.13 2.8E-06 48.8 2.9 48 642-689 3-51 (57)
25 smart00256 FBOX A Receptor for 91.0 0.21 4.5E-06 42.0 3.0 34 1209-1244 1-34 (41)
26 smart00508 PostSET Cysteine-ri 90.8 0.12 2.6E-06 42.8 1.3 15 1977-1991 2-16 (26)
27 KOG0147 Transcriptional coacti 90.3 0.47 1E-05 60.8 6.4 21 710-730 251-271 (549)
28 KOG2146 Splicing coactivator S 89.9 1.7 3.8E-05 52.4 10.2 8 428-435 220-227 (354)
29 PF02213 GYF: GYF domain; Int 89.4 0.23 5E-06 46.7 2.1 43 642-684 2-44 (57)
30 KOG1847 mRNA splicing factor [ 89.4 0.45 9.7E-06 61.5 5.2 7 550-556 817-823 (878)
31 KOG4341 F-box protein containi 89.2 0.39 8.4E-06 60.4 4.4 110 1199-1314 66-176 (483)
32 KOG2548 SWAP mRNA splicing reg 89.0 0.3 6.4E-06 62.0 3.2 10 85-94 126-135 (653)
33 KOG0670 U4/U6-associated splic 88.6 1.3 2.8E-05 57.1 8.4 21 778-798 478-498 (752)
34 PF00646 F-box: F-box domain; 88.6 0.27 6E-06 43.3 2.0 38 1205-1244 2-39 (48)
35 PF05033 Pre-SET: Pre-SET moti 88.5 0.29 6.4E-06 49.8 2.4 94 1703-1817 5-103 (103)
36 smart00444 GYF Contains conser 88.2 0.52 1.1E-05 44.7 3.6 37 996-1032 2-38 (56)
37 cd05512 Bromo_brd1_like Bromod 86.1 1.9 4E-05 44.8 6.5 59 1432-1492 2-78 (98)
38 KOG2997 F-box protein FBX9 [Ge 86.0 0.65 1.4E-05 56.8 3.7 43 1201-1243 102-147 (366)
39 KOG3794 CBF1-interacting corep 85.7 0.81 1.8E-05 56.9 4.3 16 318-333 251-266 (453)
40 cd05529 Bromo_WDR9_I_like Brom 85.2 2.4 5.1E-05 46.0 7.0 61 1431-1493 24-106 (128)
41 KOG0670 U4/U6-associated splic 85.2 1.6 3.5E-05 56.3 6.6 78 960-1043 483-573 (752)
42 PF00439 Bromodomain: Bromodom 84.4 1.4 3E-05 42.9 4.5 55 1439-1495 4-76 (84)
43 cd05513 Bromo_brd7_like Bromod 84.2 1.9 4.1E-05 44.9 5.6 59 1432-1492 2-78 (98)
44 TIGR01642 U2AF_lg U2 snRNP aux 84.0 3.2 7E-05 52.4 8.6 8 1034-1041 446-453 (509)
45 TIGR01622 SF-CC1 splicing fact 83.7 1.2 2.6E-05 55.5 4.7 12 1011-1022 381-392 (457)
46 KOG4246 Predicted DNA-binding 83.3 1.3 2.8E-05 58.9 4.7 14 1203-1216 638-651 (1194)
47 KOG3794 CBF1-interacting corep 82.2 1.1 2.4E-05 55.7 3.5 9 491-499 416-424 (453)
48 KOG0415 Predicted peptidyl pro 81.3 0.52 1.1E-05 57.8 0.3 37 403-439 430-466 (479)
49 cd05507 Bromo_brd8_like Bromod 80.1 3.1 6.7E-05 43.5 5.4 61 1430-1492 2-80 (104)
50 KOG2084 Predicted histone tail 79.4 3.2 6.9E-05 51.2 6.1 43 1925-1971 208-251 (482)
51 KOG4207 Predicted splicing fac 78.9 8.1 0.00018 45.5 8.6 7 456-462 152-158 (256)
52 PF15440 THRAP3_BCLAF1: THRAP3 78.1 9 0.00019 51.3 9.9 31 1091-1125 477-507 (646)
53 smart00297 BROMO bromo domain. 78.0 4.2 9.1E-05 41.4 5.5 63 1428-1492 4-84 (107)
54 cd05528 Bromo_AAA Bromodomain; 75.1 9.5 0.00021 40.7 7.3 61 1431-1493 3-81 (112)
55 KOG0835 Cyclin L [General func 72.9 7.7 0.00017 48.1 6.7 15 222-237 203-219 (367)
56 cd05511 Bromo_TFIID Bromodomai 72.9 7.4 0.00016 41.4 5.9 56 1435-1492 4-77 (112)
57 cd05508 Bromo_RACK7 Bromodomai 72.6 11 0.00024 39.5 7.0 56 1435-1492 7-79 (99)
58 KOG1947 Leucine rich repeat pr 72.6 4.1 8.9E-05 49.7 4.5 65 1250-1317 246-310 (482)
59 smart00444 GYF Contains conser 71.1 3.7 8E-05 39.2 2.9 43 642-684 2-44 (56)
60 KOG4246 Predicted DNA-binding 70.6 3.1 6.7E-05 55.5 3.0 8 470-477 353-360 (1194)
61 cd04369 Bromodomain Bromodomai 67.6 12 0.00027 36.4 5.8 36 1457-1494 46-81 (99)
62 cd05503 Bromo_BAZ2A_B_like Bro 66.7 13 0.00029 38.4 6.1 57 1434-1492 3-77 (97)
63 cd05504 Bromo_Acf1_like Bromod 66.1 13 0.00028 39.8 6.0 60 1433-1494 14-91 (115)
64 KOG2812 Uncharacterized conser 64.5 22 0.00047 44.7 8.1 9 778-786 359-367 (426)
65 cd05510 Bromo_SPT7_like Bromod 63.3 22 0.00047 38.2 7.0 57 1434-1492 10-85 (112)
66 cd05505 Bromo_WSTF_like Bromod 63.2 18 0.00039 37.8 6.3 59 1434-1494 3-79 (97)
67 KOG0151 Predicted splicing reg 62.7 6.3 0.00014 52.4 3.5 9 219-227 664-673 (877)
68 KOG3263 Nucleic acid binding p 60.4 2.2 4.8E-05 48.5 -0.8 17 609-626 137-153 (196)
69 cd05500 Bromo_BDF1_2_I Bromodo 60.4 25 0.00054 36.7 6.7 59 1432-1492 5-83 (103)
70 PF15440 THRAP3_BCLAF1: THRAP3 60.1 56 0.0012 44.2 11.4 25 1092-1118 490-515 (646)
71 cd05491 Bromo_TBP7_like Bromod 59.1 7.5 0.00016 42.5 2.8 43 1446-1490 56-99 (119)
72 cd05497 Bromo_Brdt_I_like Brom 58.9 27 0.00059 37.0 6.8 59 1432-1492 6-84 (107)
73 cd05495 Bromo_cbp_like Bromodo 57.0 25 0.00055 37.2 6.2 58 1433-1492 5-83 (108)
74 KOG1337 N-methyltransferase [G 56.1 7.3 0.00016 49.9 2.5 40 1925-1967 239-278 (472)
75 cd05509 Bromo_gcn5_like Bromod 52.2 38 0.00082 35.1 6.4 57 1434-1492 4-78 (101)
76 KOG1947 Leucine rich repeat pr 47.4 28 0.00061 42.7 5.5 111 1204-1315 166-282 (482)
77 KOG1869 Splicing coactivator S 47.3 46 0.00099 42.4 7.1 8 387-394 242-249 (425)
78 smart00468 PreSET N-terminal t 46.6 14 0.00031 37.9 2.4 45 1703-1749 7-56 (98)
79 KOG3263 Nucleic acid binding p 45.4 5.2 0.00011 45.7 -1.0 13 497-509 77-89 (196)
80 cd05496 Bromo_WDR9_II Bromodom 45.4 43 0.00092 36.5 5.8 58 1432-1491 6-81 (119)
81 cd05506 Bromo_plant1 Bromodoma 44.3 57 0.0012 33.6 6.2 55 1436-1492 5-79 (99)
82 cd05525 Bromo_ASH1 Bromodomain 42.7 34 0.00075 36.3 4.5 37 1456-1494 51-87 (106)
83 cd05499 Bromo_BDF1_2_II Bromod 42.3 69 0.0015 33.4 6.6 58 1434-1493 3-83 (102)
84 KOG0415 Predicted peptidyl pro 40.6 9 0.00019 47.7 -0.1 18 479-496 450-467 (479)
85 cd05498 Bromo_Brdt_II_like Bro 40.5 70 0.0015 33.2 6.2 34 1457-1492 49-82 (102)
86 KOG4341 F-box protein containi 38.8 23 0.00051 45.5 3.0 44 1277-1320 295-338 (483)
87 smart00466 SRA SET and RING fi 36.8 9.2 0.0002 43.2 -0.7 24 1646-1669 122-150 (155)
88 PF12799 LRR_4: Leucine Rich r 36.7 32 0.0007 31.2 2.8 39 1277-1319 2-40 (44)
89 cd05501 Bromo_SP100C_like Brom 33.0 83 0.0018 33.7 5.5 52 1438-1491 9-76 (102)
90 PF05663 DUF809: Protein of un 33.0 23 0.00049 37.7 1.4 12 169-180 101-112 (138)
91 cd05515 Bromo_polybromo_V Brom 31.8 65 0.0014 34.0 4.5 35 1456-1492 49-83 (105)
92 PF00560 LRR_1: Leucine Rich R 31.7 32 0.0007 27.1 1.7 21 1303-1324 1-21 (22)
93 KOG3864 Uncharacterized conser 30.8 40 0.00087 40.2 3.0 57 1261-1317 108-166 (221)
94 PF01473 CW_binding_1: Putativ 30.8 30 0.00064 26.6 1.3 11 995-1005 8-18 (19)
95 cd05518 Bromo_polybromo_IV Bro 29.7 74 0.0016 33.7 4.5 34 1457-1492 50-83 (103)
96 PF14878 DLD: Death-like domai 29.4 52 0.0011 36.1 3.4 87 2049-2149 15-108 (115)
97 KOG1862 GYF domain containing 27.0 70 0.0015 43.4 4.7 54 642-695 205-261 (673)
98 KOG1081 Transcription factor N 25.9 22 0.00047 46.2 -0.1 129 1846-1993 130-265 (463)
99 cd00116 LRR_RI Leucine-rich re 25.6 1.1E+02 0.0025 35.7 5.6 64 1248-1314 222-290 (319)
100 PF05663 DUF809: Protein of un 24.9 34 0.00073 36.5 1.0 26 164-189 108-136 (138)
101 smart00367 LRR_CC Leucine-rich 24.1 56 0.0012 26.5 1.9 22 1277-1298 3-24 (26)
102 KOG1869 Splicing coactivator S 24.0 2.4E+02 0.0052 36.5 7.9 18 515-532 380-397 (425)
103 cd05524 Bromo_polybromo_I Brom 22.8 1.1E+02 0.0024 32.9 4.4 34 1457-1492 52-85 (113)
104 cd05520 Bromo_polybromo_III Br 22.8 1.5E+02 0.0033 31.5 5.2 35 1456-1492 49-83 (103)
105 cd05502 Bromo_tif1_like Bromod 22.0 2.9E+02 0.0063 29.3 7.2 56 1437-1494 10-85 (109)
106 cd05522 Bromo_Rsc1_2_II Bromod 21.9 1.3E+02 0.0028 31.9 4.6 35 1456-1492 50-84 (104)
107 cd05516 Bromo_SNF2L2 Bromodoma 21.9 1.3E+02 0.0028 32.0 4.6 35 1456-1492 50-84 (107)
108 KOG0120 Splicing factor U2AF, 21.7 1.1E+02 0.0024 40.6 4.8 13 1012-1024 419-431 (500)
109 KOG0132 RNA polymerase II C-te 20.1 1.2E+02 0.0026 41.7 4.7 11 196-206 116-126 (894)
No 1
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.5e-68 Score=677.22 Aligned_cols=935 Identities=26% Similarity=0.263 Sum_probs=692.1
Q ss_pred CCchhhhhhccccccCCCCccccccccCCCCc-ccccccccccchhHHHHhhhcccccccCCchhhccccccCC------
Q 000079 717 SGNLLADTGDTAQSTGEEFPVTLQSQCCPDGS-AAAAESSEDLHIDVRVGALLDGFTVIPGKEIETLGELKSGD------ 789 (2396)
Q Consensus 717 ~gn~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~e~~~id~rv~~l~~~~~~~~g~e~e~~~~~~~~~------ 789 (2396)
|+|++-+...+.++-. ++......+|.+-. .++....+++.++.|+..+..+....++.|+++.++.+...
T Consensus 47 ~~n~~~~~~~~~vp~~--t~~~~~~sv~~~t~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~ke~~~~~~~~~~~~~~~k~ 124 (1005)
T KOG1080|consen 47 PCNSVPELLTSSVPSL--TSKEESQSVCSDTSKKSSRGRVRAVPSRFRDSNVGTWRSSTPSKEFETEGEILKVNSEFEEV 124 (1005)
T ss_pred cccccccccccCCCCC--CCCCcceeeeecCCCccccCCcccccccccccccccCCcccccccccCcceeeecccccCCc
Confidence 4555555554433300 01111233455555 88889999999999999999999999999998888877210
Q ss_pred ------ccCccc-----ccCCCCcccccccccCCCcccCChhhhccccccceeecCCcccccCCCCCCCCCCCCCCCCcc
Q 000079 790 ------KDHWVV-----CFDSDEWFSGRWSCKGGDWKRNDEAAQDRCSRKKQVLNDGFPLCQMPKSGYEDPRWNQKDDLY 858 (2396)
Q Consensus 790 ------~~~~~~-----~~~~~~w~~~~ws~kggdw~r~~~~~qd~~~~~k~vln~g~~lc~~~k~~~edpr~~~~d~ly 858 (2396)
.+++-. +.-...--+--|+| .+-++.+|+|+. .+|+|+|+|||.+++..++.+.|+.+.+++
T Consensus 125 ~~s~~~~~~~~~~~s~~~~~~~~~~ss~~~~-----~~~~~~s~~~~~--~i~~~~~~p~~~~~~~~~~~~~~~~~~e~~ 197 (1005)
T KOG1080|consen 125 KVSSGSSKLHPSKDSKVFPRKDNPDSSEVSC-----IDYWEASQDRYD--EIVANDGMPLKSDASSKGVYKPEEFTVGDL 197 (1005)
T ss_pred eeccCccccCcccccccCCcCCCCcccccch-----hhhhhcccCccc--ceeeccCCcCcccccccccccCcccccchh
Confidence 011110 00000111112889 888889999999 999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCcccccCCccCCCCCCCCcccccccccccccceeeeEEeeeeeEecCCCCccccCccccccCcCCCCCc
Q 000079 859 YPSHSRRLDLPPWAYACPDERNDGSGGSRSTQSKLAAVRGVKGTMLPVVRINACVVNDHGSFVSEPRSKVRAKERHSSRS 938 (2396)
Q Consensus 859 ~~~~~~~~~lp~wa~~~~~e~~~~~~~~~~~~~~~~~~~~v~g~~l~vvr~n~~vv~d~~~~~~~~~~k~~~~~r~~~r~ 938 (2396)
++..+.+...+.||+...++++ +++||+-+-+|+|.-+..|.+.+...-.....+.++..+++++.
T Consensus 198 ~~~~~~~~~~~~~a~~~d~~~~--------------~~~~v~as~~~~~~~~~~~~~s~~~~~~~~~~~r~~m~~~~~~~ 263 (1005)
T KOG1080|consen 198 VWAKSGRNEPPWPAIVIDPIRQ--------------APRGVLASCLPVAACVMFFGNSGVPTERDYAWVRRGMERPFSRP 263 (1005)
T ss_pred hhcccccCCcccccceeehhhc--------------chhhhhccCcchhhhheeeeccCCccccchhhhhhccccccchh
Confidence 9999999999999998755542 66899999888888888888888776777889999999999999
Q ss_pred cCcccccccccccccccccccccccCCCCCCcccccccccCCCCcccccccccccccceEEecCCCCccCCCcHHHHHHH
Q 000079 939 ARSYSSANDVRRSSAESDSHSKARNNQDSQGSWKSIACINTPKDRLCTVDDLQLQLGEWYYLDGAGHERGPSSFSELQVL 1018 (2396)
Q Consensus 939 ~r~~~~~~~~~~~~~e~~s~sk~~~~~~~~~~~~~~~~~~~p~d~~ct~~~l~l~~g~w~yldg~g~e~gp~s~selq~~ 1018 (2396)
.+.+.-..+..+-.....+|+-+..-+..|++|+-. +++++|+.|+|.+-|+++.+.||++|++++.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 331 (1005)
T KOG1080|consen 264 VRPFQDQTELKREKARSFEQALEEAGLAEQGNWKKD------------VDDAHLITGDSSATDSALSEGGPSSFSELQKL 331 (1005)
T ss_pred hhhccccccccccCccchhHHHHHhhcccccccccc------------ccchhhhcCCCccchhhhhccccccccccccc
Confidence 999999999888888888888888888999999977 89999999999999999999999999999999
Q ss_pred HhhcccccccccccccCceeeecccccccccccccccCCcccCCCCCCCCCCCCcccccccccCCCCCCCccccccccee
Q 000079 1019 VDQGCIQKHTSVFRKFDKVWVPLTFATETSASTVRNHGEKIMPSGDSSGLPPTQSQDAVLGESNNNVNSNAFHTMHPQFI 1098 (2396)
Q Consensus 1019 v~~g~i~~~ssvfrk~d~~wvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~f~~~hpqf~ 1098 (2396)
+..|.+..+++||++.|+.|+|++.+.....-..+.......+.+. .++....++.-...... .+-..|+..|+++.
T Consensus 332 ~~~~~~~s~~~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~l~~k~~~~~~~s~~~--~g~~~~~~~~~~~~ 408 (1005)
T KOG1080|consen 332 HEKGFIKSHSSVFRKSDKIHVPSTSITKSPPPIAKSAKKTKALPPA-QGLLCKECSDETKSNQT--CGICKRIWHSSDSG 408 (1005)
T ss_pred cccCCccccccccCCCccccccccccccCCCCchhhccccCccccc-chhhhhhhhchhhcccc--ccccceeccccccc
Confidence 9999999999999999999999999988765555444444444443 33333333333322222 44557889999999
Q ss_pred eecchhhHHHHHHHhcchHHHHHHHhhhccccccCCCchhhh-hhhccCCCCcccccceeeccccCCCCcchhhhhh-hc
Q 000079 1099 GYTRGKLHELVMKSYKNREFAAAINEVLDPWINAKQPKKETE-HVYRKSEGDTRAGKRARLLVRESDGDEETEEELQ-TI 1176 (2396)
Q Consensus 1099 gyt~gklhe~vmk~~k~r~~~~~~ne~ld~wi~~~~p~~e~e-~~~~~s~~d~~~~kr~r~~~~~s~~~~~~~~~~~-~~ 1176 (2396)
+| +++.+-|+||.+.+++.+-+ ..+..+.... ...+. .-.+.-...+ -+
T Consensus 409 d~--------------------~~~~~c~~~~~~~~~~~~~~~~~~~s~~~~~------~~~~~---~~~~~~~~~~~~~ 459 (1005)
T KOG1080|consen 409 DW--------------------VRCDGCDVWIHARCDKISSEKFKYSSSGMHN------YQTLN---FPQEYTALNLSYC 459 (1005)
T ss_pred ce--------------------eeecccccceeeccCcccccccccccccccc------ccccc---chhhhhhhhcccc
Confidence 99 78999999999999887776 3332221100 00000 0000001111 11
Q ss_pred -cCcchHhhhcCCCcccCCCccccccccCccccCcchHHHHHHHHhhhchhHHHHhhhhchhHHHHHHhhcccceeeecC
Q 000079 1177 -QDESTFEDLCGDASFPGEESASSAIESGGWGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVRFYKGISRQVDLS 1255 (2396)
Q Consensus 1177 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~l~g~~larvfh~lr~d~ksl~~~~~tc~~w~~~~~~~~~~~~~vdls 1255 (2396)
+...+|+.++++.+ +++|++|||.++.++|...+.+++|+||.++.+-++..+++.|..
T Consensus 460 ~~~~l~~d~~s~~~~--------------------~~~~~~~~~~~~~~~~~k~~~~e~~k~~~~~~~~~k~~~~~~~~~ 519 (1005)
T KOG1080|consen 460 PKCKLTFDDLSTDLS--------------------PAALARVFHMLRYSVKKKKFLSEWERHTGATAKIWKDSSRVKDEL 519 (1005)
T ss_pred chhheecccccccCC--------------------cchheeeecccCcchhhhhcccchhhhhccccccccccccccccc
Confidence 45555555555544 899999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHhhccccccceEEecccccCChhHHHHHHHhCCCccEEeeccccccccccccCCcccccccccccC
Q 000079 1256 SVGPNCTDSLIRKTLNAFDKEKLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFGELALKFPNINWVKSQKSRG 1335 (2396)
Q Consensus 1256 ~~g~~ctd~~~~~~~~~y~~~~~~~~~l~~c~n~~~~~l~~~l~~~p~~~~~~i~gc~q~~~l~~~f~~v~w~~~~~~~~ 1335 (2396)
..++.|++.....+|++|...+..+|++.+|+++...+|..+....|.+.-.++.+|.++.++.+...||.|+.++-.+.
T Consensus 520 ~~l~~~~~~~~~~~~~~~~~~~p~s~~~~~~~s~~~~~~~~~~~~~~~l~~~~t~~c~~~~~~~~~~~n~~~~~~~~~~~ 599 (1005)
T KOG1080|consen 520 LPLPKWVESRGRSIMNTYNSEKPKSIVLMGKTSVQRMLLELIEKREPRLSKWTTERCAVCRDDEDWEKNVSIICDRCTRS 599 (1005)
T ss_pred ccchhhhhhccccccccccccCCcchhhhccchhhhhcCcccccchhhhcCCCcccccccccccccccceeeeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998874411
Q ss_pred cccCcccccccchhhhcccCCCCcCcCCCCCCCCCcccchhhhhccccccchhhhhhhhhhccchhhhccccccccchhH
Q 000079 1336 AKFNDSRSKIRSLKQITEKSSSAPKSKGLGDDMDDFGDLKDYFESVDKRDSANQSFRRSLYQRSKVFDARKSSSILSRDA 1415 (2396)
Q Consensus 1336 ~~~~~~~~k~~sl~~~~~~~~~~~~~~~~~~~~~~~~~l~~yf~~v~~r~~a~~~f~~~~y~rs~~~dar~ss~~~~~da 1415 (2396)
-..+.+|+++.|+..++..++++++ .|+|.+++.+.++.++.++|
T Consensus 600 ------------------------------~~s~~~g~~~~~~~~~~~~~~~~~~----~~~r~~~l~~~~g~al~p~d- 644 (1005)
T KOG1080|consen 600 ------------------------------VHSECYGNLKSYDGTSWVCDSCETL----DIKRSCCLCPVKGGALKPTD- 644 (1005)
T ss_pred ------------------------------CCCcccccCCCCCCCcchhhccccc----cCCchhhhccccCcccCCCC-
Confidence 1147889999999999999998888 99999999999999999999
Q ss_pred HHHHhhhhhcchhhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhhccccccccCCcchhhHHHH--HHHHHHHhccC
Q 000079 1416 RMRRWSIKKSENGYKRMEEFLASSLKEIMRVNTFEFFVPKVAEIEGRMKKGYYISHGLGSVKDDISR--MCRDAIKAKNR 1493 (2396)
Q Consensus 1416 ~~rr~~~k~~e~~y~~~~~~~~~~l~~im~~~~~~~f~~kv~~ie~~~k~gyy~~~g~~~~k~di~~--~~r~a~~~~~~ 1493 (2396)
+.|.|.+..|. .+||+++++-.+-.|..+.+.|+--.+.+|=.- ||+-.--..+.. .|+.|+.
T Consensus 645 ~gr~~~~e~a~---~~~e~~~~~~~~~~p~~~~~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~a~~---- 709 (1005)
T KOG1080|consen 645 EGRWVHVECAW---FRPEVCLASPERMEPAVGTFKIPALSFLKICFI--------HGSCRQCCKCETGSHAMCASR---- 709 (1005)
T ss_pred ccchhhhhchh---ccccccCCCccCCCCcccccccCccchhhhccc--------cccccccchhhhcceehhhcC----
Confidence 99999999999 899999999999999999999998877664222 554432222211 1233333
Q ss_pred CCCCccchHHHHHHHHHHHhhhccccchhhHHHHHhhcccCCCCcccccchhhhhhhhhhhhhhhhcccCCCCcccCCCC
Q 000079 1494 GSAGDMNRITTLFIQLATRLEQGAKSSYYEREEMMKSWKDESPAGLYSATSKYKKKLSKMVSERKYMNRSNGTSLANGDF 1573 (2396)
Q Consensus 1494 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~r~~~~~~~~~~~~~~~~~~~~k~k~k~~k~~~~~~~~~~~~~~~~~~~~~ 1573 (2396)
.++ ++.+.+|+.- ++.+-...+.-..+++ .-++.-+...+-.+.+..+++..++..+++-+
T Consensus 710 ----------~~~-~~~~~~l~~~---~~~~~~~~~~~~~~~d-----~~l~~~~~~~~~~~~~~~~~k~~~~~g~~~~~ 770 (1005)
T KOG1080|consen 710 ----------AGY-IMEAVSLEEV---SQQTTSYVKEDGPGPD-----SVLKVNTPSGKFGAENLSQNKKSRTDGVRLVL 770 (1005)
T ss_pred ----------ccC-hhhhhhhhhh---hhhhhhhhhhccCCcc-----cceeecCccccccccchhhhhhcccccccccc
Confidence 333 4444444442 1111111111000111 11111111222223344455555555569999
Q ss_pred CcccccchHHHHHHhhhhcccccCCCCCCCcCCCCCCCCCCCCCccccccCCccccccccccccccCCCCCccCCCCccc
Q 000079 1574 DYGEYASDREIRKRLSKLNRKSLDSGSETSDDLDGSSEDGKSDSESTVSDTDSDMDFRSDGRARESRGAGDFTTDEGLDF 1653 (2396)
Q Consensus 1574 d~~~~~~~~ei~r~l~kl~~~~~~s~setsd~~d~~~e~~~~~~~~t~s~~~s~~~~~~~~~~~~~~~~~~~~~~dgl~~ 1653 (2396)
++++++.++||++++..+|+.++.|+.-.. .+ ..++++....+++|+.|..+.....+.+...+++..+
T Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~------~~-~r~~~~~~~~~~~s~~~~~s~~~s~~~s~~~rl~q~r---- 839 (1005)
T KOG1080|consen 771 TYKEYAPLREIKSRAEPLNRIDFSSEARCR------SE-SRSDNSKSPLAEESESDITSGGSSHDLSAEERLNQFR---- 839 (1005)
T ss_pred ccccccccccchhcccCCcccCcccccccc------ch-hhcccccccccccccccccccccccchhHHhhhHHHH----
Confidence 999999999999999999999998874332 22 2788888888888888888777766655444443222
Q ss_pred ccccccccccccccCCCCccceeeeEEeeeeccchHhHhhhcccccchhhhhhhccccCCCccccCCcCccccccccccc
Q 000079 1654 SDDREWGARMTKASLVPPVTRKYEVIDQYVIVADEEDVRRKMRVSLPEDYAEKLNAQKNGSEELDMELPEVKDYKPRKQL 1733 (2396)
Q Consensus 1654 i~~~~~G~~m~k~~lvP~~~rky~vI~~y~iv~D~e~v~~km~v~lpd~~~Ekl~~~~ngt~e~~~~~PelK~Y~prKvL 1733 (2396)
| .=.++..+. .|+.++.+.|++.++.++
T Consensus 840 ---------l-----~a~~~~~~~--------~~~~~~~~~~~~~~rkk~------------------------------ 867 (1005)
T KOG1080|consen 840 ---------L-----SASFTASFI--------LDEAEVLRYNQLKFRKKY------------------------------ 867 (1005)
T ss_pred ---------h-----hhhcccccc--------cchHHHHHHHHHhhhhhh------------------------------
Confidence 0 000000000 333344433333322220
Q ss_pred CCccceeeecccCccCcccccccCCCccccchhhhchhhHHHHHHHHhhhccccCCCCCCCCCCCCCCcccccCCcCccC
Q 000079 1734 GDQVFEQEVYGIDPYTHNLLLDSMPDELDWNLLEKHLFIEDVLLRTLNKQVRHFTGTGNTPMMYPLQPVIEEIEKEAVDD 1813 (2396)
Q Consensus 1734 G~DViEqel~GcDcyTr~~I~~sLP~el~Ws~~qKn~FIek~LL~tLNkqvRhf~G~g~tP~~c~ckPViEC~eC~Cge~ 1813 (2396)
T Consensus 868 -------------------------------------------------------------------------------- 867 (1005)
T KOG1080|consen 868 -------------------------------------------------------------------------------- 867 (1005)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhhhcccccccccccCCCcceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCc
Q 000079 1814 CDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPE 1893 (2396)
Q Consensus 1814 C~NRllQ~Cq~ilk~i~r~PleVFrT~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~d 1893 (2396)
+..-+...+||||||++ +|.+|+||+||+||+|.+.=...++. .|...+...
T Consensus 868 --------------------~~F~~s~iH~wglfa~~--~i~~~dmViEY~Ge~vR~~iad~RE~------~Y~~~gi~~ 919 (1005)
T KOG1080|consen 868 --------------------VKFGRSGIHGWGLFAME--NIAAGDMVIEYRGELVRSSIADLREA------RYERMGIGD 919 (1005)
T ss_pred --------------------hccccccccccceeecc--CccccceEEEeeceehhhhHHHHHHH------HHhccCccc
Confidence 00011335799999997 59999999999999997532222221 122233344
Q ss_pred ceEEeecCCCCCCCCCceEEEcCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCCCcc
Q 000079 1894 FYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKE 1973 (2396)
Q Consensus 1894 FY~myL~r~~gD~dGyd~lvIDATrkGNiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~eske 1973 (2396)
.|||+.+. .+|||||++||+||||||||+|||++.++.|+|+.+|+|||.|+|.+||||||||.|..+..
T Consensus 920 ---sYlfrid~------~~ViDAtk~gniAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e~~- 989 (1005)
T KOG1080|consen 920 ---SYLFRIDD------EVVVDATKKGNIARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTEDD- 989 (1005)
T ss_pred ---ceeeeccc------ceEEeccccCchhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecccccccc-
Confidence 44555543 28999999999999999999999999999999999999999999999999999999988643
Q ss_pred cccCeeEEeCCCCccccc
Q 000079 1974 EYEASVCLCGSQVCRGSY 1991 (2396)
Q Consensus 1974 E~ek~~CLCGS~nCRGs~ 1991 (2396)
+.+|+|||++|||++
T Consensus 990 ---kipClCgap~Crg~~ 1004 (1005)
T KOG1080|consen 990 ---KIPCLCGAPNCRGFL 1004 (1005)
T ss_pred ---ccccccCCCcccccc
Confidence 699999999999954
No 2
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-39 Score=392.76 Aligned_cols=169 Identities=27% Similarity=0.458 Sum_probs=144.0
Q ss_pred ccccc--CCc-CccCCCchhhhcccccccccccCCCcceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhh
Q 000079 1802 VIEEI--EKE-AVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQD 1878 (2396)
Q Consensus 1802 ViEC~--eC~-Cge~C~NRllQ~Cq~ilk~i~r~PleVFrT~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd 1878 (2396)
.+||. .|. |+..|.|..-|.++. .++++|.|..|||||+|..+ |++|+||+||+||||+..++..+
T Consensus 94 ~iECs~~~C~~cg~~C~NQRFQkkqy-------A~vevF~Te~KG~GLRA~~d--I~~g~FI~EY~GEVI~~~Ef~kR-- 162 (729)
T KOG4442|consen 94 SIECSDRECPRCGVYCKNQRFQKKQY-------AKVEVFLTEKKGCGLRAEED--IPKGQFILEYIGEVIEEKEFEKR-- 162 (729)
T ss_pred hcccCCccCCCccccccchhhhhhcc-------CceeEEEecCcccceeeccc--cCCCcEEeeeccccccHHHHHHH--
Confidence 35663 455 677777766665443 47899999999999999998 99999999999999997665544
Q ss_pred hhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCC
Q 000079 1879 GIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYG 1958 (2396)
Q Consensus 1879 ~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDATrkGNiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pG 1958 (2396)
+..|..++..+||+|+|... .+||||.+||+||||||||+|||++++|+|+|++||||||.|.|.+|
T Consensus 163 ----~~~Y~~d~~kh~Yfm~L~~~---------e~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~G 229 (729)
T KOG4442|consen 163 ----VKRYAKDGIKHYYFMALQGG---------EYIDATKKGNLARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPG 229 (729)
T ss_pred ----HHHHHhcCCceEEEEEecCC---------ceecccccCcHHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCC
Confidence 34566778999999998753 69999999999999999999999999999999999999999999999
Q ss_pred CeEEEecCCCCCCcccccCeeEEeCCCCcccccccCCCc
Q 000079 1959 EEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGE 1997 (2396)
Q Consensus 1959 EELTFDYg~~~eskeE~ek~~CLCGS~nCRGs~L~~~~e 1997 (2396)
|||||||++..++. .+++|+||+++|+|||.+....
T Consensus 230 EEITFDYqf~rYGr---~AQ~CyCgeanC~G~IGgk~q~ 265 (729)
T KOG4442|consen 230 EEITFDYQFDRYGR---DAQPCYCGEANCRGWIGGKPQT 265 (729)
T ss_pred ceeeEecccccccc---cccccccCCcccccccCCCCcc
Confidence 99999999998765 5689999999999977666443
No 3
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=2.3e-28 Score=289.21 Aligned_cols=265 Identities=21% Similarity=0.207 Sum_probs=169.3
Q ss_pred hhcccccchh--hhhhhcc-ccCCCcc-ccCCcCcccccccccccCC--ccceeeecccCccCcccccccCCCccccchh
Q 000079 1693 RKMRVSLPED--YAEKLNA-QKNGSEE-LDMELPEVKDYKPRKQLGD--QVFEQEVYGIDPYTHNLLLDSMPDELDWNLL 1766 (2396)
Q Consensus 1693 ~km~v~lpd~--~~Ekl~~-~~ngt~e-~~~~~PelK~Y~prKvLG~--DViEqel~GcDcyTr~~I~~sLP~el~Ws~~ 1766 (2396)
.+++..++|. +.|.|++ +.|.+++ +. .-++|....++.+ .-.....-||+|........... +.+.
T Consensus 56 ~~~~~~~~d~~~~~e~~~v~~~n~id~~~~----~~f~y~~~~~~~~~~~~~~~~~~~c~C~~~~~~~~~~~----C~C~ 127 (364)
T KOG1082|consen 56 LEAKSELEDIALGSENLPVPLVNRIDEDAP----LYFQYIATEIVDPGELSDCENSTGCRCCSSCSSVLPLT----CLCE 127 (364)
T ss_pred cccccccccccCccccCceeeeeeccCCcc----ccceeccccccCccccccCccccCCCccCCCCCCCCcc----ccCh
Confidence 3445555554 7778888 7777763 22 2333444333333 22335677888886432222110 1122
Q ss_pred hhchhhHHHHHHHHhhhccccCCCCCC-CCCCCCCCccccc-CCcCccCCCchhhhcccccccccccCCCcceecCCccc
Q 000079 1767 EKHLFIEDVLLRTLNKQVRHFTGTGNT-PMMYPLQPVIEEI-EKEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGL 1844 (2396)
Q Consensus 1767 qKn~FIek~LL~tLNkqvRhf~G~g~t-P~~c~ckPViEC~-eC~Cge~C~NRllQ~Cq~ilk~i~r~PleVFrT~~KGw 1844 (2396)
.++.. ...+..++.. .....-.+++||. .|+|+..|.||++|.+. +.+++||++..+||
T Consensus 128 ~~n~~------------~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q~g~-------~~~leIfrt~~kGw 188 (364)
T KOG1082|consen 128 RHNGG------------LVAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVVQKGL-------QFHLEVFRTPEKGW 188 (364)
T ss_pred HhhCC------------ccccccCCccccccccCccccccccCCCCCCcCcchhhcccc-------ccceEEEecCCcee
Confidence 22211 1111111110 1122334678995 89999999999999863 45899999999999
Q ss_pred eEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCC-------------CCCCCCce
Q 000079 1845 GVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPK-------------GDADGYDL 1911 (2396)
Q Consensus 1845 GVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~-------------gD~dGyd~ 1911 (2396)
||++.+. |++|+|||||+||+++..++..+.... .+..+ ....|...+.... ........
T Consensus 189 gvRs~~~--I~~G~fvcEyaGe~~t~~e~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (364)
T KOG1082|consen 189 GVRTLDP--IPAGEFVCEYAGEVLTSEEAQRRTHLR----EYLDD-DCDAYSIADREWVDESPVGNTFVAPSLPGGPGRE 261 (364)
T ss_pred eeccccc--ccCCCeeEEEeeEecChHHhhhccccc----ccccc-ccccchhhhccccccccccccccccccccCCCcc
Confidence 9999986 999999999999999986654332111 11111 1111211111000 00011234
Q ss_pred EEEcCcccCCcccccCCCCCCCeEEEEEEECC----EEEEEEEEcCCCCCCCeEEEecCCCCC----Ccc----cccCee
Q 000079 1912 VVVDAMHKANYASRICHSCRPNCEAKVTAVDG----HYQIGIYTVRGIHYGEEITFDYNSVTE----SKE----EYEASV 1979 (2396)
Q Consensus 1912 lvIDATrkGNiARFINHSCdPNCeaq~v~VnG----e~RIgfFAlRDI~pGEELTFDYg~~~e----ske----E~ek~~ 1979 (2396)
++|||...||+||||||||.||+.++.+..+. .++|+|||+++|.|||||||||+..+. ... ......
T Consensus 262 ~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~~~~~~~~~~~~~~~~~~ 341 (364)
T KOG1082|consen 262 LLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYKLLVQDGANIYTPVMKKN 341 (364)
T ss_pred eEEchhhcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcccccccccccccccccccchh
Confidence 89999999999999999999999999988874 489999999999999999999996632 111 235678
Q ss_pred EEeCCCCccccc
Q 000079 1980 CLCGSQVCRGSY 1991 (2396)
Q Consensus 1980 CLCGS~nCRGs~ 1991 (2396)
|.||+.+||+.+
T Consensus 342 c~c~~~~cr~~~ 353 (364)
T KOG1082|consen 342 CNCGLEKCRGLL 353 (364)
T ss_pred hcCCCHHhCccc
Confidence 999999999954
No 4
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.83 E-value=7.5e-21 Score=231.94 Aligned_cols=114 Identities=30% Similarity=0.457 Sum_probs=94.6
Q ss_pred cCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCcc
Q 000079 1839 AYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMH 1918 (2396)
Q Consensus 1839 T~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDATr 1918 (2396)
+..-|||+|+.+. +.+++||.||+||+|+..|...+-..+.+ +-..+|+....+ ++|||++
T Consensus 601 SdVaGwGlFlKe~--v~KnefisEY~GE~IS~dEADrRGkiYDr-----------~~cSflFnln~d------yviDs~r 661 (739)
T KOG1079|consen 601 SDVAGWGLFLKES--VSKNEFISEYTGEIISHDEADRRGKIYDR-----------YMCSFLFNLNND------YVIDSTR 661 (739)
T ss_pred hhccccceeeccc--cCCCceeeeecceeccchhhhhccccccc-----------ccceeeeecccc------ceEeeee
Confidence 3346999999975 99999999999999998776544332211 112445555433 7999999
Q ss_pred cCCcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCCC
Q 000079 1919 KANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTES 1971 (2396)
Q Consensus 1919 kGNiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~es 1971 (2396)
+||.+||+|||-+|||++.+++|+|..||||||.|.|.+||||||||.+..+.
T Consensus 662 kGnk~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs~~~ 714 (739)
T KOG1079|consen 662 KGNKIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYSPEH 714 (739)
T ss_pred ecchhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccCccc
Confidence 99999999999999999999999999999999999999999999999987653
No 5
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.83 E-value=1.7e-21 Score=243.32 Aligned_cols=127 Identities=27% Similarity=0.528 Sum_probs=103.0
Q ss_pred ccccccCCCcceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCC
Q 000079 1826 LKAMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGD 1905 (2396)
Q Consensus 1826 lk~i~r~PleVFrT~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD 1905 (2396)
.+.-.+.++.+|+.+.+||||.+.. +|++|+||+||+||||...++.+++ +..+ ....+.|.+.+..+
T Consensus 1172 ~r~e~cp~L~v~~gp~~G~~v~tk~--PikagtfI~EYvGeVit~ke~e~~m-----mtl~--~~d~~~~cL~I~p~--- 1239 (1306)
T KOG1083|consen 1172 QRHEECPPLEVFRGPKKGWGVRTKE--PIKAGTFIMEYVGEVITEKEFEPRM-----MTLY--HNDDDHYCLVIDPG--- 1239 (1306)
T ss_pred hhhccCCCcceeccCCCCccccccc--cccccchHHHHHHHHHHHHhhcccc-----cccC--CCCCcccccccCcc---
Confidence 3344445799999999999999997 5999999999999999865544331 1111 12344555544322
Q ss_pred CCCCceEEEcCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCC
Q 000079 1906 ADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTE 1970 (2396)
Q Consensus 1906 ~dGyd~lvIDATrkGNiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~e 1970 (2396)
+|||+.++||.+||+||||.|||+++.|.|+|.+||++||+|||.+||||||||++..+
T Consensus 1240 ------l~id~~R~~n~~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks~ 1298 (1306)
T KOG1083|consen 1240 ------LFIDIPRMGNGARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKSF 1298 (1306)
T ss_pred ------ccCChhhccccccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecccccc
Confidence 79999999999999999999999999999999999999999999999999999997554
No 6
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.82 E-value=7.5e-20 Score=177.78 Aligned_cols=114 Identities=33% Similarity=0.571 Sum_probs=90.3
Q ss_pred cceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEE
Q 000079 1835 DKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVV 1914 (2396)
Q Consensus 1835 eVFrT~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvI 1914 (2396)
+++.++.+|+||||+++ |++|++|++|.|.++...+..+....... .....+|.+.... .++|
T Consensus 3 ~~~~~~~~G~gl~a~~~--i~~g~~i~~~~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---------~~~i 65 (116)
T smart00317 3 EVFKSPGKGWGVRATED--IPKGEFIGEYVGEIITSEEAEERSKAYDT------DGADSFYLFEIDS---------DLCI 65 (116)
T ss_pred EEEecCCCcEEEEECCc--cCCCCEEEEEEeEEECHHHHHHHHHHHHh------cCCCCEEEEECCC---------CEEE
Confidence 45666789999999997 99999999999999987554433221111 1111233332211 2799
Q ss_pred cCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEec
Q 000079 1915 DAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDY 1965 (2396)
Q Consensus 1915 DATrkGNiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDY 1965 (2396)
|+...||++|||||||.|||.+..+..++..+|.|+|+|||++|||||+||
T Consensus 66 d~~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 66 DARRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred eCCccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 999999999999999999999999999988899999999999999999999
No 7
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.76 E-value=8e-19 Score=214.99 Aligned_cols=188 Identities=23% Similarity=0.361 Sum_probs=128.4
Q ss_pred ccccc-CCcCccCCCchhhhcccccccccc-cCCCcceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhh
Q 000079 1802 VIEEI-EKEAVDDCDVRTMKMCRGILKAMD-SRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDG 1879 (2396)
Q Consensus 1802 ViEC~-eC~Cge~C~NRllQ~Cq~ilk~i~-r~PleVFrT~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~ 1879 (2396)
+++|. .|.|...|.++.++...+.-.++. -.-+++|.+..-|||+.+..| |+.-+|||+|+|...+..-..+-..+
T Consensus 981 f~e~~~hss~~~~e~~~~v~~~~~~~me~~s~~~l~i~~~~~~~~~~~edtD--~~~~~~~~~~~~~ppt~~l~~~~r~a 1058 (1262)
T KOG1141|consen 981 FFECNDHSSCHRKEYNRVVQNNIKYPMEVSSFNDLQIFKTAQSGWGVREDTD--IPQSTFICTYVGAPPTDDLADELRNA 1058 (1262)
T ss_pred ceeccccchhcccccchhhhcCCccceeeeeccccccccccccccccccccc--CCCCcccccccCCCCchhhHHHHhhh
Confidence 46774 788999999999986544322222 223789999999999999987 99999999999988765221111110
Q ss_pred hHhhhcCCC-------------CCCCcc------eE------------E-------------------------------
Q 000079 1880 IRSLQKNNE-------------DPAPEF------YN------------I------------------------------- 1897 (2396)
Q Consensus 1880 IRrlq~d~k-------------d~~~dF------Y~------------m------------------------------- 1897 (2396)
++..+-+.. +....| |. +
T Consensus 1059 qad~~sn~~D~~~~~~l~es~~~~~T~~r~~t~~~~~~~~~d~dd~q~I~k~ve~qd~~~~~~~T~~~~RQ~~~~s~k~~ 1138 (1262)
T KOG1141|consen 1059 QADQYSNDLDLKDTVELEESREDHETDFRGDTSDYDDEEGSDGDDGQDIMKMVERQDSSESGEETKRLTRQKRKQSKKSG 1138 (1262)
T ss_pred hhccccCccchhhhhhhhhcccccccccCCCCCCCcccccccCccHHHHHHHhhcccccccccccchhhhhhhhhhhhcc
Confidence 000000000 000000 00 0
Q ss_pred --------------eecCCCCC--------CCCC----ceEEEcCcccCCcccccCCCCCCCeEEEEEEECCE----EEE
Q 000079 1898 --------------YLERPKGD--------ADGY----DLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGH----YQI 1947 (2396)
Q Consensus 1898 --------------yL~r~~gD--------~dGy----d~lvIDATrkGNiARFINHSCdPNCeaq~v~VnGe----~RI 1947 (2396)
+....++. .+-| ..++|||+..||++||+||||+||+.+|.++|+-+ |.+
T Consensus 1139 ~~~s~~~~~~ts~~~~~~dkges~~~~~~~~~~y~~~~~~yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwV 1218 (1262)
T KOG1141|consen 1139 KGGSVEKDDTTSRDSMEKDKGESKDEPVFNWDKYFEPFPLYVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWV 1218 (1262)
T ss_pred cCccccccccCccchhhhccCccCcccccchhhccCCCceEEEecccccchhhhhccCCCccceeeeeeeeccccCCchh
Confidence 00000000 0001 24899999999999999999999999999999975 889
Q ss_pred EEEEcCCCCCCCeEEEecCCCCCCcccccCeeEEeCCCCcccccc
Q 000079 1948 GIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYL 1992 (2396)
Q Consensus 1948 gfFAlRDI~pGEELTFDYg~~~eskeE~ek~~CLCGS~nCRGs~L 1992 (2396)
||||.+-|++|+||||||++.....+. ....|.||+.+|||.+|
T Consensus 1219 AFFt~kyVkAgtELTWDY~Ye~g~v~~-keL~C~CGa~~CrgrLL 1262 (1262)
T KOG1141|consen 1219 AFFTRKYVKAGTELTWDYQYEQGQVAT-KELTCHCGAENCRGRLL 1262 (1262)
T ss_pred hhhhhhhhccCceeeeecccccccccc-ceEEEecChhhhhcccC
Confidence 999999999999999999987654433 34789999999999775
No 8
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.60 E-value=1.6e-15 Score=172.34 Aligned_cols=116 Identities=28% Similarity=0.398 Sum_probs=95.2
Q ss_pred cCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCcc
Q 000079 1839 AYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMH 1918 (2396)
Q Consensus 1839 T~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDATr 1918 (2396)
..+||.||+|+.. |++|+||.||.|.+|...+..+++.. |..+....+|+ |.|.+.. ..++||||.
T Consensus 263 ~dgKGRGv~a~~~--F~rgdFVVEY~Gdliei~eAk~rE~~------Ya~De~~GcYM-YyF~h~s-----k~yCiDAT~ 328 (392)
T KOG1085|consen 263 KDGKGRGVRAKVN--FERGDFVVEYRGDLIEISEAKVREEQ------YANDEEIGCYM-YYFEHNS-----KKYCIDATK 328 (392)
T ss_pred eccccceeEeecc--cccCceEEEEecceeeechHHHHHHH------hccCcccceEE-EeeeccC-----eeeeeeccc
Confidence 3469999999986 99999999999999987666555432 33455666774 4444432 238999997
Q ss_pred cC-CcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCC
Q 000079 1919 KA-NYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSV 1968 (2396)
Q Consensus 1919 kG-NiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~ 1968 (2396)
-- -++|.||||-.+||.+..+.++|.+++.++|.|||.+||||+||||..
T Consensus 329 et~~lGRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 329 ETPWLGRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred ccccchhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc
Confidence 65 479999999999999999999999999999999999999999999964
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.48 E-value=1e-14 Score=179.14 Aligned_cols=142 Identities=30% Similarity=0.500 Sum_probs=106.8
Q ss_pred CCcceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceE
Q 000079 1833 PDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLV 1912 (2396)
Q Consensus 1833 PleVFrT~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~l 1912 (2396)
+..+.....+|+||||... |++|+||++|.|+++...+...+.. .+.. ....+..++.... ..
T Consensus 333 ~~~~~~~~~~~~g~fa~~~--i~~~e~i~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~-------~~ 395 (480)
T COG2940 333 PNVVQESEIKGYGVFALES--IKKGEFIIEYHGEIIRRKEAREREE------NYDL--LGNEFSFGLLEDK-------DK 395 (480)
T ss_pred hhhhhhhcccccceeehhh--ccchHHHHHhcCcccchHHHHhhhc------cccc--cccccchhhcccc-------ch
Confidence 4455567789999999986 9999999999999987533222111 1111 1111111122111 26
Q ss_pred EEcCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCCCcc-----cccCeeEEeCCCCc
Q 000079 1913 VVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKE-----EYEASVCLCGSQVC 1987 (2396)
Q Consensus 1913 vIDATrkGNiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~eske-----E~ek~~CLCGS~nC 1987 (2396)
++|+...|+++|||||||.|||.+....++|..++.++|+|||.+|||||+||+...+... ......|.||+..|
T Consensus 396 ~~d~~~~g~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (480)
T COG2940 396 VRDSQKAGDVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRC 475 (480)
T ss_pred hhhhhhcccccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCcc
Confidence 8999999999999999999999999988888889999999999999999999998876432 11357899999999
Q ss_pred cccc
Q 000079 1988 RGSY 1991 (2396)
Q Consensus 1988 RGs~ 1991 (2396)
++++
T Consensus 476 ~~~~ 479 (480)
T COG2940 476 SHTM 479 (480)
T ss_pred CCCC
Confidence 9965
No 10
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.31 E-value=1.9e-12 Score=130.29 Aligned_cols=54 Identities=30% Similarity=0.442 Sum_probs=46.0
Q ss_pred EEcCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecC
Q 000079 1913 VVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYN 1966 (2396)
Q Consensus 1913 vIDATrkGNiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg 1966 (2396)
..++.....++.|+||||.|||.+......+...+.|.|.|+|++|||||++||
T Consensus 109 ~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 109 DRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred cccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 456667788999999999999999887666677899999999999999999997
No 11
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.79 E-value=1.3e-09 Score=134.49 Aligned_cols=122 Identities=29% Similarity=0.550 Sum_probs=94.7
Q ss_pred EeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCcccCCccccc
Q 000079 1847 VCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRI 1926 (2396)
Q Consensus 1847 FAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDATrkGNiARFI 1926 (2396)
+|..+ |.+| +|+++...++.-+.... ......++|..++..+ ..||+..+||+.||+
T Consensus 319 ~~~~~--~~k~------vg~~i~~~e~~~~~~~~------~~~~~~~~~~~~~e~~---------~~id~~~~~n~sr~~ 375 (463)
T KOG1081|consen 319 TAKAD--IRKG------VGEVIDDKECKARLQRV------KESDLVDFYMVFIQKD---------RIIDAGPKGNYSRFL 375 (463)
T ss_pred hhHHh--hhcc------cCcccchhhheeehhhh------hccchhhhhhhhhhcc---------cccccccccchhhhh
Confidence 56655 7777 99999876554332211 1223455665444432 279999999999999
Q ss_pred CCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCCCcccccCeeEEeCCCCcccccccCC
Q 000079 1927 CHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLT 1995 (2396)
Q Consensus 1927 NHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~eskeE~ek~~CLCGS~nCRGs~L~~~ 1995 (2396)
||||+|||+.+.+.+.+..++++||.+.|+.||||||+|+..... ..+.|.||+.+|.++.....
T Consensus 376 nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~~~~----~~~~~~~~~e~~~~~~~k~~ 440 (463)
T KOG1081|consen 376 NHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGNCEG----NEKRCCCGSENCTETKGKKK 440 (463)
T ss_pred cccCCCceeechhheecccccccccccccccchhhhheeeccccC----CcceEeecccccccCCcccc
Confidence 999999999999999999999999999999999999999987553 34789999999999665443
No 12
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.67 E-value=1.5e-08 Score=119.85 Aligned_cols=120 Identities=26% Similarity=0.386 Sum_probs=88.1
Q ss_pred CccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCcccC
Q 000079 1841 RKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKA 1920 (2396)
Q Consensus 1841 ~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDATrkG 1920 (2396)
..|--|++++. |.+|+-|--.+|-|+.-.+.+|+.- . .....+|-.||-.+..- |...=
T Consensus 136 ~~gAkivst~~--w~~ndkIe~LvGcIaeLse~eE~~l-l-------~~g~nDFSvmyStRk~c-----------aqLwL 194 (453)
T KOG2589|consen 136 QNGAKIVSTKS--WSRNDKIELLVGCIAELSEAEERSL-L-------RGGGNDFSVMYSTRKRC-----------AQLWL 194 (453)
T ss_pred CCCceEEeecc--ccCCccHHHhhhhhhhcChhhhHHH-H-------hccCCceeeeeecccch-----------hhhee
Confidence 56889999986 9999999999999876554444321 1 12356777777655321 22223
Q ss_pred CcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCCCcccccCeeEEeCCCCccc
Q 000079 1921 NYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRG 1989 (2396)
Q Consensus 1921 NiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~eskeE~ek~~CLCGS~nCRG 1989 (2396)
..|+||||-|.|||++.. .|.-++.+-++|||+||||||.=|+..+++.. ...|.|-+ |-.
T Consensus 195 GPaafINHDCrpnCkFvs---~g~~tacvkvlRDIePGeEITcFYgs~fFG~~---N~~CeC~T--CER 255 (453)
T KOG2589|consen 195 GPAAFINHDCRPNCKFVS---TGRDTACVKVLRDIEPGEEITCFYGSGFFGEN---NEECECVT--CER 255 (453)
T ss_pred ccHHhhcCCCCCCceeec---CCCceeeeehhhcCCCCceeEEeecccccCCC---CceeEEee--ccc
Confidence 568999999999999866 57678999999999999999999999988753 34566644 643
No 13
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=97.43 E-value=0.00011 Score=65.25 Aligned_cols=45 Identities=40% Similarity=0.789 Sum_probs=43.1
Q ss_pred ceEEecCCCCccCCCcHHHHHHHHhhcccccccccccccCceeeec
Q 000079 996 EWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFDKVWVPL 1041 (2396)
Q Consensus 996 ~w~yldg~g~e~gp~s~selq~~v~~g~i~~~ssvfrk~d~~wvp~ 1041 (2396)
.|||.+ .|..+||||+.||..|+..|.|...+-|.+.--.-|+|+
T Consensus 1 ~Wy~~~-~g~~~GP~s~~el~~l~~~g~i~~~tlvw~~g~~~W~pl 45 (45)
T PF14237_consen 1 EWYYAR-NGQQQGPFSLEELRQLISSGEIDPDTLVWKEGMSDWKPL 45 (45)
T ss_pred CEEEeC-CCeEECCcCHHHHHHHHHcCCCCCCCeEeCCChhhceEC
Confidence 599999 899999999999999999999999999999999999996
No 14
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=96.96 E-value=0.00019 Score=91.63 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=51.7
Q ss_pred ccccc-CC-cCccCCCchhhhcccccccccccCCCcceecCCccceEEeCccCCcCCCCEEEEEecEEecc
Q 000079 1802 VIEEI-EK-EAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPV 1870 (2396)
Q Consensus 1802 ViEC~-eC-~Cge~C~NRllQ~Cq~ilk~i~r~PleVFrT~~KGwGVFAteDegI~KGEFI~EYVGEVIt~ 1870 (2396)
++||. .| +|+..|.||++|.+-++ .+++|.+..||||++|..+ |..|.|||-|.|-++..
T Consensus 774 ~yEc~k~ckc~~~~C~nrmvqhg~qv-------Rlq~fkt~~kGWg~rcldd--i~~g~fVciy~g~~l~~ 835 (1262)
T KOG1141|consen 774 PYECLKACKCCGPDCLNRMVQHGYQV-------RLQRFKTIHKGWGRRCLDD--ITGGNFVCIYPGGALLH 835 (1262)
T ss_pred HHHHHHhhccCcHHHHHHHhhcCcee-------EeeeccccccccceEeeee--cCCceEEEEecchhhhh
Confidence 57884 34 46899999999987554 6889999999999999998 99999999999999875
No 15
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=96.46 E-value=0.0027 Score=78.68 Aligned_cols=104 Identities=21% Similarity=0.163 Sum_probs=74.0
Q ss_pred CccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCc--c
Q 000079 1841 RKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAM--H 1918 (2396)
Q Consensus 1841 ~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDAT--r 1918 (2396)
..|.||.+... |.+|+-.+-|.|+++.. + ........|.-.++..+ . ...+||++ .
T Consensus 39 ~~~lgV~s~~~--i~~G~~FGP~~G~~~~~----~-----------~~~~~n~~y~W~I~~~d---~--~~~~iDg~d~~ 96 (396)
T KOG2461|consen 39 VTGLGVWSNAS--ILPGTSFGPFEGEIIAS----I-----------DSKSANNRYMWEIFSSD---N--GYEYIDGTDEE 96 (396)
T ss_pred Ccccccccccc--ccCcccccCccCccccc----c-----------ccccccCcceEEEEeCC---C--ceEEeccCChh
Confidence 45899999986 99999999999998221 0 00112234544444432 1 23799996 4
Q ss_pred cCCcccccCCCCCC---CeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCC
Q 000079 1919 KANYASRICHSCRP---NCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTE 1970 (2396)
Q Consensus 1919 kGNiARFINHSCdP---NCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~e 1970 (2396)
..|+.||+|=.|+. |+.+. ...-.|.+.|+|+|.+||||.+.|+.++-
T Consensus 97 ~sNWmRYV~~Ar~~eeQNL~A~----Q~~~~Ifyrt~r~I~p~eELlVWY~~e~~ 147 (396)
T KOG2461|consen 97 HSNWMRYVNSARSEEEQNLLAF----QIGENIFYRTIRDIRPNEELLVWYGSEYA 147 (396)
T ss_pred hcceeeeecccCChhhhhHHHH----hccCceEEEecccCCCCCeEEEEeccchH
Confidence 68999999988854 66552 23346889999999999999999997654
No 16
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=96.15 E-value=0.0032 Score=55.69 Aligned_cols=36 Identities=33% Similarity=0.618 Sum_probs=31.8
Q ss_pred cccCcchHHHHHHHHhhhchhHHHHhhhhchhHHHHHH
Q 000079 1206 WGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR 1243 (2396)
Q Consensus 1206 w~~l~g~~larvfh~lr~d~ksl~~~~~tc~~w~~~~~ 1243 (2396)
|.-|+..+|..||.|| |++.|+-++.|||+|+.++.
T Consensus 1 i~~LP~Eil~~If~~L--~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYL--DPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS---HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHC
Confidence 6779999999999999 99999999999999999984
No 17
>PF02213 GYF: GYF domain; InterPro: IPR003169 The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif. It was identified in the human intracellular protein termed CD2 binding protein 2 (CD2BP2), which binds to a site containing two tandem PPPGHR segments within the cytoplasmic region of CD2. Binding experiments and mutational analyses have demonstrated the critical importance of the GYF tripeptide in ligand binding. A GYF domain is also found in several other eukaryotic proteins of unknown function []. It has been proposed that the GYF domain found in these proteins could also be involved in proline-rich sequence recognition []. Resolution of the structure of the CD2BP2 GYF domain by NMR spectroscopy revealed a compact domain with a beta-beta-alpha-beta-beta topology, where the single alpha-helix is tilted away from the twisted, anti-parallel beta-sheet. The conserved residues of the GYF domain create a contiguous patch of predominantly hydrophobic nature which forms an integral part of the ligand-binding site []. There is limited homology within the C-terminal 20-30 amino acids of various GYF domains, supporting the idea that this part of the domain is structurally but not functionally important [].; GO: 0005515 protein binding; PDB: 1SYX_F 1L2Z_A 1GYF_A 1WH2_A 3FMA_C 3K3V_A.
Probab=95.62 E-value=0.0069 Score=56.61 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=37.9
Q ss_pred ceEEecCCCCccCCCcHHHHHHHHhhcccccccccccccC----ceeeeccc
Q 000079 996 EWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFD----KVWVPLTF 1043 (2396)
Q Consensus 996 ~w~yldg~g~e~gp~s~selq~~v~~g~i~~~ssvfrk~d----~~wvp~~~ 1043 (2396)
.|||+|..|..+|||+-.++|.-.++|.+....-|.|..+ ..|+++..
T Consensus 2 ~W~Y~d~~g~~qGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~~~~~~~~~~ 53 (57)
T PF02213_consen 2 MWYYKDPDGNIQGPFSSEQMQAWYKQGYFPDDLQVRRVDDTQFIDPFGSIDR 53 (57)
T ss_dssp EEEEESTTS-EEEEEEHHHHHHHHHTTSSTTT-EEEETTSTTT--SSCECCG
T ss_pred EeEEECCCCCcCCCcCHHHHHHHHHCCCCCCCcEEEEecCCCCcccchhhhh
Confidence 4999999999999999999999999999998777777644 44555543
No 18
>cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.
Probab=95.41 E-value=0.016 Score=54.65 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=42.5
Q ss_pred ceEEecCCCCccCCCcHHHHHHHHhhcccccccccccc-cCceeeeccccc
Q 000079 996 EWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRK-FDKVWVPLTFAT 1045 (2396)
Q Consensus 996 ~w~yldg~g~e~gp~s~selq~~v~~g~i~~~ssvfrk-~d~~wvp~~~~~ 1045 (2396)
-|+|+|-.|..||||+-++++.-..+|.....--|=|. .|.-|+||....
T Consensus 3 ~W~Y~d~~g~vqGPF~~~~M~~W~~~gyF~~~l~vr~~~~~~~f~~l~~~~ 53 (57)
T cd00072 3 QWFYKDPQGEIQGPFSASQMLQWYQAGYFPDGLQVRRLDNGGEFYTLGDIL 53 (57)
T ss_pred EEEEECCCCCCcCCcCHHHHHHHHHCCCCCCCeEEEECCCCCCcEEHHHHH
Confidence 39999999999999999999999999999876555555 567899987654
No 19
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.39 E-value=0.017 Score=70.72 Aligned_cols=9 Identities=22% Similarity=0.169 Sum_probs=4.1
Q ss_pred CCCCCCCCC
Q 000079 64 NNGSSSSKN 72 (2396)
Q Consensus 64 ~~~~~~~~~ 72 (2396)
|.|+...-.
T Consensus 30 ~lGkI~elr 38 (479)
T KOG4676|consen 30 NLGKIPELR 38 (479)
T ss_pred hcccccccc
Confidence 345554443
No 20
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=93.62 E-value=0.13 Score=65.58 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=8.8
Q ss_pred ccccCC-CCCCCCCCccccc
Q 000079 619 MEEDMD-ICDTPPHVPAVTD 637 (2396)
Q Consensus 619 meeDmD-IcdtppH~~~~~d 637 (2396)
++--|. .|++--|.-.-.|
T Consensus 274 ~~~p~~rl~vgnLHfNite~ 293 (549)
T KOG0147|consen 274 FTGPMRRLYVGNLHFNITED 293 (549)
T ss_pred cccchhhhhhcccccCchHH
Confidence 344444 4555555444433
No 21
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=92.76 E-value=0.11 Score=66.12 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=7.0
Q ss_pred ccccccccccccCC
Q 000079 365 HYSRHSVEKFHRNS 378 (2396)
Q Consensus 365 ~ys~~s~~rr~r~~ 378 (2396)
.|-+.-+.+|.+++
T Consensus 562 Afys~pshdrpr~s 575 (757)
T KOG4368|consen 562 AFYSPPSHDRPRNS 575 (757)
T ss_pred HhhccccccCCCCC
Confidence 35445555555544
No 22
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=92.53 E-value=0.089 Score=47.18 Aligned_cols=44 Identities=25% Similarity=0.626 Sum_probs=41.6
Q ss_pred cEEEeccCCcccCchhhhhhhhhhhcCcccccchhhccCCCCcee
Q 000079 642 KWFYLDHCGMECGPSRLCDLKTLVEEGVLVSDHFIKHLDSNRWET 686 (2396)
Q Consensus 642 kWfyld~~G~e~gp~~l~~lk~l~~~g~l~~dh~ikh~d~~~w~t 686 (2396)
+|||.+ +|...||-.+.+|+.|...|.|-.+-||=+-+-.-|+.
T Consensus 1 ~Wy~~~-~g~~~GP~s~~el~~l~~~g~i~~~tlvw~~g~~~W~p 44 (45)
T PF14237_consen 1 EWYYAR-NGQQQGPFSLEELRQLISSGEIDPDTLVWKEGMSDWKP 44 (45)
T ss_pred CEEEeC-CCeEECCcCHHHHHHHHHcCCCCCCCeEeCCChhhceE
Confidence 699999 99999999999999999999999999999999888875
No 23
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=91.92 E-value=0.17 Score=64.49 Aligned_cols=12 Identities=58% Similarity=0.509 Sum_probs=5.9
Q ss_pred cccccccchhhc
Q 000079 12 QQQQQHNSIMER 23 (2396)
Q Consensus 12 ~~~~~~~~~~~~ 23 (2396)
||+|+.+--||+
T Consensus 275 q~~q~q~~~~e~ 286 (757)
T KOG4368|consen 275 QQQQQQMPQMEA 286 (757)
T ss_pred HHHHHhhHHHHH
Confidence 444445555554
No 24
>cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.
Probab=91.90 E-value=0.13 Score=48.79 Aligned_cols=48 Identities=21% Similarity=0.438 Sum_probs=44.6
Q ss_pred cEEEeccCCcccCchhhhhhhhhhhcCcccccchhhcc-CCCCceeeec
Q 000079 642 KWFYLDHCGMECGPSRLCDLKTLVEEGVLVSDHFIKHL-DSNRWETVEN 689 (2396)
Q Consensus 642 kWfyld~~G~e~gp~~l~~lk~l~~~g~l~~dh~ikh~-d~~~w~t~e~ 689 (2396)
.|+|+|..|..|||=-...+..-.+.|++-.|..|+.. +..+|+++..
T Consensus 3 ~W~Y~d~~g~vqGPF~~~~M~~W~~~gyF~~~l~vr~~~~~~~f~~l~~ 51 (57)
T cd00072 3 QWFYKDPQGEIQGPFSASQMLQWYQAGYFPDGLQVRRLDNGGEFYTLGD 51 (57)
T ss_pred EEEEECCCCCCcCCcCHHHHHHHHHCCCCCCCeEEEECCCCCCcEEHHH
Confidence 59999999999999999999999999999999999999 6679998754
No 25
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=91.00 E-value=0.21 Score=42.00 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=29.6
Q ss_pred CcchHHHHHHHHhhhchhHHHHhhhhchhHHHHHHh
Q 000079 1209 LDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVRF 1244 (2396)
Q Consensus 1209 l~g~~larvfh~lr~d~ksl~~~~~tc~~w~~~~~~ 1244 (2396)
|+..+|.+||-|| |.+.++.++.+|+.|++++..
T Consensus 1 lP~~ll~~I~~~l--~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKL--PPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcC
Confidence 5678999999988 569999999999999999853
No 26
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=90.75 E-value=0.12 Score=42.76 Aligned_cols=15 Identities=47% Similarity=1.116 Sum_probs=13.3
Q ss_pred CeeEEeCCCCccccc
Q 000079 1977 ASVCLCGSQVCRGSY 1991 (2396)
Q Consensus 1977 k~~CLCGS~nCRGs~ 1991 (2396)
.+.|+|||.+|||++
T Consensus 2 ~~~C~CGs~~CRG~l 16 (26)
T smart00508 2 KQPCLCGAPNCRGFL 16 (26)
T ss_pred CeeeeCCCcccccee
Confidence 378999999999976
No 27
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=90.34 E-value=0.47 Score=60.79 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=15.9
Q ss_pred ccCCCCCCCchhhhhhccccc
Q 000079 710 LVSPPEASGNLLADTGDTAQS 730 (2396)
Q Consensus 710 lv~ppea~gn~l~~~~~~~~~ 730 (2396)
+|-++||-+|+++.++..++.
T Consensus 251 ~vq~sEaeknr~a~~s~a~~~ 271 (549)
T KOG0147|consen 251 IVQLSEAEKNRAANASPALQG 271 (549)
T ss_pred EecccHHHHHHHHhccccccc
Confidence 488899999997777666554
No 28
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=89.93 E-value=1.7 Score=52.36 Aligned_cols=8 Identities=63% Similarity=1.049 Sum_probs=3.5
Q ss_pred CCCCCCCC
Q 000079 428 RDRSPSRH 435 (2396)
Q Consensus 428 r~RSP~rr 435 (2396)
|.|||-+.
T Consensus 220 Rsrsp~r~ 227 (354)
T KOG2146|consen 220 RSRSPPRE 227 (354)
T ss_pred cccCCccc
Confidence 44444443
No 29
>PF02213 GYF: GYF domain; InterPro: IPR003169 The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif. It was identified in the human intracellular protein termed CD2 binding protein 2 (CD2BP2), which binds to a site containing two tandem PPPGHR segments within the cytoplasmic region of CD2. Binding experiments and mutational analyses have demonstrated the critical importance of the GYF tripeptide in ligand binding. A GYF domain is also found in several other eukaryotic proteins of unknown function []. It has been proposed that the GYF domain found in these proteins could also be involved in proline-rich sequence recognition []. Resolution of the structure of the CD2BP2 GYF domain by NMR spectroscopy revealed a compact domain with a beta-beta-alpha-beta-beta topology, where the single alpha-helix is tilted away from the twisted, anti-parallel beta-sheet. The conserved residues of the GYF domain create a contiguous patch of predominantly hydrophobic nature which forms an integral part of the ligand-binding site []. There is limited homology within the C-terminal 20-30 amino acids of various GYF domains, supporting the idea that this part of the domain is structurally but not functionally important [].; GO: 0005515 protein binding; PDB: 1SYX_F 1L2Z_A 1GYF_A 1WH2_A 3FMA_C 3K3V_A.
Probab=89.40 E-value=0.23 Score=46.68 Aligned_cols=43 Identities=21% Similarity=0.479 Sum_probs=37.8
Q ss_pred cEEEeccCCcccCchhhhhhhhhhhcCcccccchhhccCCCCc
Q 000079 642 KWFYLDHCGMECGPSRLCDLKTLVEEGVLVSDHFIKHLDSNRW 684 (2396)
Q Consensus 642 kWfyld~~G~e~gp~~l~~lk~l~~~g~l~~dh~ikh~d~~~w 684 (2396)
.|+|+|..|..|||=-...+..-...|++-.+..|++.+...|
T Consensus 2 ~W~Y~d~~g~~qGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~ 44 (57)
T PF02213_consen 2 MWYYKDPDGNIQGPFSSEQMQAWYKQGYFPDDLQVRRVDDTQF 44 (57)
T ss_dssp EEEEESTTS-EEEEEEHHHHHHHHHTTSSTTT-EEEETTSTTT
T ss_pred EeEEECCCCCcCCCcCHHHHHHHHHCCCCCCCcEEEEecCCCC
Confidence 6999999999999999999999999999999999999976433
No 30
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.38 E-value=0.45 Score=61.49 Aligned_cols=7 Identities=43% Similarity=0.192 Sum_probs=2.8
Q ss_pred cCCCCCC
Q 000079 550 KLGPKDS 556 (2396)
Q Consensus 550 K~~~k~~ 556 (2396)
|-+++..
T Consensus 817 ~~~~~~~ 823 (878)
T KOG1847|consen 817 KRIKKDE 823 (878)
T ss_pred ccCcCcc
Confidence 3344433
No 31
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=89.20 E-value=0.39 Score=60.42 Aligned_cols=110 Identities=22% Similarity=0.401 Sum_probs=74.4
Q ss_pred cccccCccccCcchHHHHHHHHhhhchhHHHHhhhhchhHHHHHHhhcccc-eeeecCCCCCCchhHHHHHHHhhccccc
Q 000079 1199 SAIESGGWGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVRFYKGIS-RQVDLSSVGPNCTDSLIRKTLNAFDKEK 1277 (2396)
Q Consensus 1199 ~~~~~~~w~~l~g~~larvfh~lr~d~ksl~~~~~tc~~w~~~~~~~~~~~-~~vdls~~g~~ctd~~~~~~~~~y~~~~ 1277 (2396)
++-++.+|. |++.+|-|||-|| |.|||-=++.-|+-|+-.|-= ..+ -++||-..---=--.|+.+|++.-+ +.
T Consensus 66 ~~~~~~~~~-LPpEl~lkvFS~L--Dtksl~r~a~~c~~~n~~AlD--~~~~q~idL~t~~rDv~g~VV~~~~~Rcg-g~ 139 (483)
T KOG4341|consen 66 ADNNSISRS-LPPELLLKVFSML--DTKSLCRAAQCCTMWNKLALD--GSCWQHIDLFTFQRDVDGGVVENMISRCG-GF 139 (483)
T ss_pred hhccccccc-CCHHHHHHHHHHH--hHHHHHHHHHHHHHhhhhhhc--cccceeeehhcchhcCCCcceehHhhhhc-cc
Confidence 345567786 5678999999999 999999999999999987631 111 2344433322222346666665444 66
Q ss_pred cceEEecccccCChhHHHHHHHhCCCccEEeeccccc
Q 000079 1278 LNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQ 1314 (2396)
Q Consensus 1278 ~~~~~l~~c~n~~~~~l~~~l~~~p~~~~~~i~gc~q 1314 (2396)
++.+-|.||-++--..|.-+..-+|.|..+.|.||-.
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~ 176 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKK 176 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhccee
Confidence 6777777777777777777777777777777777753
No 32
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=88.96 E-value=0.3 Score=62.03 Aligned_cols=10 Identities=50% Similarity=0.461 Sum_probs=4.3
Q ss_pred cchhhhhhhe
Q 000079 85 VSTKTVRKKI 94 (2396)
Q Consensus 85 ~~~~~~~~~~ 94 (2396)
++.+.-+++|
T Consensus 126 vSE~~~L~qi 135 (653)
T KOG2548|consen 126 VSEKHYLKQI 135 (653)
T ss_pred ccHHHHHHHH
Confidence 3444444443
No 33
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=88.63 E-value=1.3 Score=57.08 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=13.3
Q ss_pred chhhccccccCCccCcccccC
Q 000079 778 EIETLGELKSGDKDHWVVCFD 798 (2396)
Q Consensus 778 e~e~~~~~~~~~~~~~~~~~~ 798 (2396)
|||+|..+-++++++-|||.-
T Consensus 478 EleiLkKL~~AD~Edk~Hclr 498 (752)
T KOG0670|consen 478 ELEILKKLNDADPEDKFHCLR 498 (752)
T ss_pred HHHHHHHhhccCchhhhHHHH
Confidence 666666666666666666543
No 34
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=88.59 E-value=0.27 Score=43.29 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=30.9
Q ss_pred ccccCcchHHHHHHHHhhhchhHHHHhhhhchhHHHHHHh
Q 000079 1205 GWGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVRF 1244 (2396)
Q Consensus 1205 ~w~~l~g~~larvfh~lr~d~ksl~~~~~tc~~w~~~~~~ 1244 (2396)
+|.-|+-.+|..||.+| |+++++..+.||++|+.++..
T Consensus 2 ~~~~LP~~il~~Il~~l--~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYL--DPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHHS-HHHHHHHHHTS---HHHHHHHCTT-HHHHHHHTT
T ss_pred CHHHCCHHHHHHHHHHC--cHHHHHHHHHHhhHHHHHHcC
Confidence 36668889999999988 789999999999999999864
No 35
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=88.51 E-value=0.29 Score=49.80 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=43.2
Q ss_pred hhhhhcc-ccCCCccccCCcCcccccccccccCCc---cceeeecccCccCcccccccCCCccccchhhhchhhHHHHHH
Q 000079 1703 YAEKLNA-QKNGSEELDMELPEVKDYKPRKQLGDQ---VFEQEVYGIDPYTHNLLLDSMPDELDWNLLEKHLFIEDVLLR 1778 (2396)
Q Consensus 1703 ~~Ekl~~-~~ngt~e~~~~~PelK~Y~prKvLG~D---ViEqel~GcDcyTr~~I~~sLP~el~Ws~~qKn~FIek~LL~ 1778 (2396)
+.|++|+ ++|.+| +...|.-+.|.++.+++.. ......+||+|.. .+. -+. .......+..
T Consensus 5 g~e~~pI~~~N~vd--~~~~p~~F~Yi~~~~~~~~~~~~~~~~~~~C~C~~-~C~---~~~--~C~C~~~~~~------- 69 (103)
T PF05033_consen 5 GKENVPIPVVNDVD--DEPPPPNFEYIPENIYGEGVPDIDPEFLQGCDCSG-DCS---NPS--NCECLQRNGG------- 69 (103)
T ss_dssp TSSSS-EEEEESSS--S--SSTSSEE-SS-EESTTSS-TBGGGTS----SS-SST---CTT--TSHHHCCTSS-------
T ss_pred CccCCCEEEEeCCC--CCCCCCCeEEeeeEEcCCCccccccccCccCccCC-CCC---CCC--CCcCccccCc-------
Confidence 6788888 889988 3445788888888888774 3556777999943 220 111 1111111100
Q ss_pred HHhhhccccCCCCCCCCCCCCCCccccc-CCcCccCCCch
Q 000079 1779 TLNKQVRHFTGTGNTPMMYPLQPVIEEI-EKEAVDDCDVR 1817 (2396)
Q Consensus 1779 tLNkqvRhf~G~g~tP~~c~ckPViEC~-eC~Cge~C~NR 1817 (2396)
...+...+... .....+++||. .|.|+..|.||
T Consensus 70 -----~~~Y~~~g~l~-~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 70 -----IFAYDSNGRLR-IPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp -----S-SB-TTSSBS-SSSTSEEE---TTSSS-TTSTT-
T ss_pred -----cccccCCCcCc-cCCCCeEEeCCCCCCCCCCCCCC
Confidence 00011111111 12356789995 89999999997
No 36
>smart00444 GYF Contains conserved Gly-Tyr-Phe residues. Proline-binding domain in CD2-binding protein. Contains conserved Gly-Tyr-Phe residues.
Probab=88.21 E-value=0.52 Score=44.66 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=31.6
Q ss_pred ceEEecCCCCccCCCcHHHHHHHHhhccccccccccc
Q 000079 996 EWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFR 1032 (2396)
Q Consensus 996 ~w~yldg~g~e~gp~s~selq~~v~~g~i~~~ssvfr 1032 (2396)
-|+|+|-.|..+|||+-+++|.-.++|.....--|=|
T Consensus 2 ~W~Y~d~~~~iqGPf~~~~M~~W~~~gyF~~~l~vr~ 38 (56)
T smart00444 2 LWLYKDPDGEIQGPFTASQMSQWYQAGYFPDSLQIKR 38 (56)
T ss_pred EEEEECCCCCEeCCcCHHHHHHHHHCCCCCCCeEEEE
Confidence 3999999999999999999999999999975443333
No 37
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=86.11 E-value=1.9 Score=44.82 Aligned_cols=59 Identities=15% Similarity=0.330 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhcccccccch------------------hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1432 MEEFLASSLKEIMRVNTFEFFVPK------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1432 ~~~~~~~~l~~im~~~~~~~f~~k------------------v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
++++|...|..||+......|.-- +..|+.|+++|+|.+ +..+..|+..|+.+|+.+-.
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s--~~ef~~D~~li~~Na~~yN~ 78 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRT--LEDFEADFNLIINNCLAYNA 78 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 578899999999999988888752 248999999999987 78899999999999988644
No 38
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=86.04 E-value=0.65 Score=56.84 Aligned_cols=43 Identities=30% Similarity=0.462 Sum_probs=36.6
Q ss_pred cccCccccCcchHHHHHHHHhhh---chhHHHHhhhhchhHHHHHH
Q 000079 1201 IESGGWGLLDGHTLAHVFHFLRS---DMKSLAFASLTCRHWRAAVR 1243 (2396)
Q Consensus 1201 ~~~~~w~~l~g~~larvfh~lr~---d~ksl~~~~~tc~~w~~~~~ 1243 (2396)
+...+-.-|+..+|+|||..+-+ |+.||.-+||||++|.-|++
T Consensus 102 p~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 102 PELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred hhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence 33334567999999999999876 88999999999999999875
No 39
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=85.70 E-value=0.81 Score=56.86 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=9.2
Q ss_pred ccccccccCCCCCCCC
Q 000079 318 FHGNRFKRHGTDSDSG 333 (2396)
Q Consensus 318 ~~~~r~kR~~~~~~s~ 333 (2396)
.+.+..+++++++.++
T Consensus 251 kskS~~s~e~SdSs~~ 266 (453)
T KOG3794|consen 251 KSKSSKSKEGSDSSSS 266 (453)
T ss_pred cccchhccccCCcccc
Confidence 3445566666666555
No 40
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=85.18 E-value=2.4 Score=45.96 Aligned_cols=61 Identities=23% Similarity=0.377 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHH---Hhcccccccc---hh----------------HHHHhhhccccccccCCcchhhHHHHHHHHHH
Q 000079 1431 RMEEFLASSLKEIM---RVNTFEFFVP---KV----------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAI 1488 (2396)
Q Consensus 1431 ~~~~~~~~~l~~im---~~~~~~~f~~---kv----------------~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~ 1488 (2396)
.+-+.+...|+.|| +.....+|.- +. ..|+.|+++|||.+ +..+..||..|+.+|.
T Consensus 24 ~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s--~~~f~~Dv~Li~~Na~ 101 (128)
T cd05529 24 EERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRS--LEALRHDVRLILSNAE 101 (128)
T ss_pred HHHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHH
Confidence 34477889999999 6666666652 22 47999999999988 7789999999999998
Q ss_pred HhccC
Q 000079 1489 KAKNR 1493 (2396)
Q Consensus 1489 ~~~~~ 1493 (2396)
.+-..
T Consensus 102 ~yN~~ 106 (128)
T cd05529 102 TFNEP 106 (128)
T ss_pred HHCCC
Confidence 87543
No 41
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=85.17 E-value=1.6 Score=56.30 Aligned_cols=78 Identities=28% Similarity=0.405 Sum_probs=41.1
Q ss_pred ccccCCCCCCcccccccccC--CCCccccccc-ccccccceEEecCCCCccCCC-----c-----HHHHHHHHhhccccc
Q 000079 960 KARNNQDSQGSWKSIACINT--PKDRLCTVDD-LQLQLGEWYYLDGAGHERGPS-----S-----FSELQVLVDQGCIQK 1026 (2396)
Q Consensus 960 k~~~~~~~~~~~~~~~~~~~--p~d~~ct~~~-l~l~~g~w~yldg~g~e~gp~-----s-----~selq~~v~~g~i~~ 1026 (2396)
|+.++.|-.+-+-++-+.-+ -+.|||-|=| |.|+|-+- |---|+--|=. | |-.|.-|-.-|+|-.
T Consensus 483 kKL~~AD~Edk~Hclrl~r~F~hknHLClVFE~LslNLRev--LKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHa 560 (752)
T KOG0670|consen 483 KKLNDADPEDKFHCLRLFRHFKHKNHLCLVFEPLSLNLREV--LKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHA 560 (752)
T ss_pred HHhhccCchhhhHHHHHHHHhhhcceeEEEehhhhchHHHH--HHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeec
Confidence 44455555555555444433 3678998844 67776553 33445555533 2 334444444555433
Q ss_pred ccccccccCceeeeccc
Q 000079 1027 HTSVFRKFDKVWVPLTF 1043 (2396)
Q Consensus 1027 ~ssvfrk~d~~wvp~~~ 1043 (2396)
-- |-||+-|-=..
T Consensus 561 DI----KPDNiLVNE~k 573 (752)
T KOG0670|consen 561 DI----KPDNILVNESK 573 (752)
T ss_pred cc----CccceEeccCc
Confidence 32 66777775433
No 42
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=84.36 E-value=1.4 Score=42.89 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=43.4
Q ss_pred HHHHHHHhcccccccc------------------hhHHHHhhhccccccccCCcchhhHHHHHHHHHHHhccCCC
Q 000079 1439 SLKEIMRVNTFEFFVP------------------KVAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGS 1495 (2396)
Q Consensus 1439 ~l~~im~~~~~~~f~~------------------kv~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~~~~ 1495 (2396)
-|.++|+.....+|.- -+..|+.|+++|+|.+ +..+..|+.+|+.+|+.+-..++
T Consensus 4 il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s--~~~f~~Dv~~i~~Na~~yn~~~s 76 (84)
T PF00439_consen 4 ILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKS--IEEFEADVRLIFQNARRYNPPDS 76 (84)
T ss_dssp HHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSS--HHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhh--HHHHHHHHHHHHHHHHHHCCCcC
Confidence 4667787777777742 2348999999999996 88999999999999999755443
No 43
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=84.23 E-value=1.9 Score=44.90 Aligned_cols=59 Identities=25% Similarity=0.512 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1432 MEEFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1432 ~~~~~~~~l~~im~~~~~~~f~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
+.+.|..-|..+|+.....+|.--| ..|+.|+++|+|.+ +..+..||..|+.+|.++-.
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s--~~~f~~D~~li~~Na~~yN~ 78 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQS--IEEFKDDFKLMCENAMKYNK 78 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 3467778899999999988886322 48999999999986 88999999999999998744
No 44
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=84.04 E-value=3.2 Score=52.41 Aligned_cols=8 Identities=13% Similarity=0.335 Sum_probs=3.9
Q ss_pred cCceeeec
Q 000079 1034 FDKVWVPL 1041 (2396)
Q Consensus 1034 ~d~~wvp~ 1041 (2396)
...++||-
T Consensus 446 v~~v~i~~ 453 (509)
T TIGR01642 446 LINIVIPR 453 (509)
T ss_pred eeEEEeec
Confidence 34455553
No 45
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=83.70 E-value=1.2 Score=55.47 Aligned_cols=12 Identities=17% Similarity=-0.100 Sum_probs=5.2
Q ss_pred cHHHHHHHHhhc
Q 000079 1011 SFSELQVLVDQG 1022 (2396)
Q Consensus 1011 s~selq~~v~~g 1022 (2396)
-|.||..=|.+.
T Consensus 381 ~~~~~~~dv~~e 392 (457)
T TIGR01622 381 FDNEILDDVKEE 392 (457)
T ss_pred HHHHHHHHHHHH
Confidence 445554433333
No 46
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=83.26 E-value=1.3 Score=58.86 Aligned_cols=14 Identities=21% Similarity=0.435 Sum_probs=7.9
Q ss_pred cCccccCcchHHHH
Q 000079 1203 SGGWGLLDGHTLAH 1216 (2396)
Q Consensus 1203 ~~~w~~l~g~~lar 1216 (2396)
-+.|.-||+.++-+
T Consensus 638 PT~wSkldpK~mKv 651 (1194)
T KOG4246|consen 638 PTTWSKLDPKIMKV 651 (1194)
T ss_pred CCcccccCchhhhh
Confidence 34566666655443
No 47
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=82.22 E-value=1.1 Score=55.69 Aligned_cols=9 Identities=44% Similarity=0.708 Sum_probs=3.5
Q ss_pred cCCCccccc
Q 000079 491 AERSPQDRA 499 (2396)
Q Consensus 491 ~erSP~dRs 499 (2396)
-|++...|+
T Consensus 416 ~E~~Rr~rs 424 (453)
T KOG3794|consen 416 EERSRRNRS 424 (453)
T ss_pred hhhhhhhhh
Confidence 334443333
No 48
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=81.34 E-value=0.52 Score=57.81 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=25.3
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000079 403 IYDRHGRSPSHSDRSPHDRGRYYDHRDRSPSRHDRSP 439 (2396)
Q Consensus 403 ~y~rr~rsps~~~rsp~DR~R~~~~r~RSP~rr~Rs~ 439 (2396)
+|.+|.|..-+++|..+++-++|+||+.|++||.++.
T Consensus 430 ~~~kR~rt~nkssrr~r~~d~hyS~~~~~e~rr~~~d 466 (479)
T KOG0415|consen 430 SRRKRERTRNKSSRRERDEDDHYSHRDKSEERRERYD 466 (479)
T ss_pred hHHHhhhhccccccccccccccchhcccchhhcccch
Confidence 3445555556666777777778888888888766555
No 49
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=80.07 E-value=3.1 Score=43.50 Aligned_cols=61 Identities=15% Similarity=0.216 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhHHHHHHHHHHHhc
Q 000079 1430 KRMEEFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAK 1491 (2396)
Q Consensus 1430 ~~~~~~~~~~l~~im~~~~~~~f~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~ 1491 (2396)
+-+.+.|.+-|..||+......|.-.| ..|+.|+++|+|.+ +..+..|+..|+.+|+.+-
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s--~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRS--TAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHC
Confidence 456788999999999988877776433 37999999999965 6889999999999998864
Q ss_pred c
Q 000079 1492 N 1492 (2396)
Q Consensus 1492 ~ 1492 (2396)
+
T Consensus 80 ~ 80 (104)
T cd05507 80 S 80 (104)
T ss_pred C
Confidence 4
No 50
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=79.40 E-value=3.2 Score=51.15 Aligned_cols=43 Identities=35% Similarity=0.539 Sum_probs=31.4
Q ss_pred ccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCC-eEEEecCCCCCC
Q 000079 1925 RICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGE-EITFDYNSVTES 1971 (2396)
Q Consensus 1925 FINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGE-ELTFDYg~~~es 1971 (2396)
++||||.||+. ...++.. ..+++...+.+++ ||+..|-....+
T Consensus 208 ~~~hsC~pn~~---~~~~~~~-~~~~~~~~~~~~~~~l~~~y~~~~~~ 251 (482)
T KOG2084|consen 208 LFNHSCFPNIS---VIFDGRG-LALLVPAGIDAGEEELTISYTDPLLS 251 (482)
T ss_pred hcccCCCCCeE---EEECCce-eEEEeecccCCCCCEEEEeecccccC
Confidence 89999999998 3345543 3455666666666 999999876664
No 51
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=78.85 E-value=8.1 Score=45.50 Aligned_cols=7 Identities=57% Similarity=0.833 Sum_probs=2.8
Q ss_pred cCCCCCC
Q 000079 456 RERSPYN 462 (2396)
Q Consensus 456 R~RSPy~ 462 (2396)
+.|++|.
T Consensus 152 ~~rS~~s 158 (256)
T KOG4207|consen 152 RVRSRYS 158 (256)
T ss_pred cccCccc
Confidence 3344443
No 52
>PF15440 THRAP3_BCLAF1: THRAP3/BCLAF1 family
Probab=78.11 E-value=9 Score=51.34 Aligned_cols=31 Identities=29% Similarity=0.218 Sum_probs=15.2
Q ss_pred cccccceeeecchhhHHHHHHHhcchHHHHHHHhh
Q 000079 1091 HTMHPQFIGYTRGKLHELVMKSYKNREFAAAINEV 1125 (2396)
Q Consensus 1091 ~~~hpqf~gyt~gklhe~vmk~~k~r~~~~~~ne~ 1125 (2396)
|-+=-|..+=..=-|||-.-++- -.|+.||+
T Consensus 477 H~VKa~~F~ss~mTL~ERFt~yq----~~a~e~e~ 507 (646)
T PF15440_consen 477 HHVKAQHFPSSGMTLNERFTKYQ----RKAAENEI 507 (646)
T ss_pred eeeeccccCCCCccHHHHHHHhh----hhhhHhhh
Confidence 33333444444445777665554 23555654
No 53
>smart00297 BROMO bromo domain.
Probab=78.03 E-value=4.2 Score=41.36 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccccch------------------hHHHHhhhccccccccCCcchhhHHHHHHHHHHH
Q 000079 1428 GYKRMEEFLASSLKEIMRVNTFEFFVPK------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIK 1489 (2396)
Q Consensus 1428 ~y~~~~~~~~~~l~~im~~~~~~~f~~k------------------v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~ 1489 (2396)
..++|...|..-+..+++.-....|.-. ...|+.|+++|+|.+ +..+..|+..|+.+|+.
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s--~~ef~~D~~li~~Na~~ 81 (107)
T smart00297 4 LQKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSS--VEEFVADVQLMFSNAKT 81 (107)
T ss_pred hHHHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHH
Confidence 3577888888888888876555566521 238999999999965 77889999999999988
Q ss_pred hcc
Q 000079 1490 AKN 1492 (2396)
Q Consensus 1490 ~~~ 1492 (2396)
+-.
T Consensus 82 ~n~ 84 (107)
T smart00297 82 YNG 84 (107)
T ss_pred HCC
Confidence 754
No 54
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=75.07 E-value=9.5 Score=40.72 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1431 RMEEFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1431 ~~~~~~~~~l~~im~~~~~~~f~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
.|--+|..-|..||+...+..|.--| ..|+.|+++|+|.+ +..+..||..|+.+|..+-.
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s--~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLT--AKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCC--HHHHHHHHHHHHHHHHHHCC
Confidence 34567888899999988777776544 37999999999976 66889999999999988754
Q ss_pred C
Q 000079 1493 R 1493 (2396)
Q Consensus 1493 ~ 1493 (2396)
.
T Consensus 81 ~ 81 (112)
T cd05528 81 D 81 (112)
T ss_pred C
Confidence 3
No 55
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=72.93 E-value=7.7 Score=48.12 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=8.0
Q ss_pred ccccccc--ccccccccc
Q 000079 222 FIPDRWH--KEVVKDEYG 237 (2396)
Q Consensus 222 fi~~rw~--~~~~k~e~~ 237 (2396)
|-| -|. .++-+.||.
T Consensus 203 ~~P-~Wf~~Fd~~k~eid 219 (367)
T KOG0835|consen 203 FQP-HWFKAFDTTKREID 219 (367)
T ss_pred CCc-cHHHHcCCcHHHHH
Confidence 444 344 366666663
No 56
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=72.88 E-value=7.4 Score=41.36 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1435 FLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1435 ~~~~~l~~im~~~~~~~f~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
+|...|.+||+...+..|+-.| ..|+.|+++|+|.. +..+..|+..|+.+|..+-+
T Consensus 4 ~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s--~~ef~~Dv~li~~Na~~yN~ 77 (112)
T cd05511 4 ILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQS--REEFLEDIELIVDNSVLYNG 77 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 4556677788777666665433 38999999999976 68899999999999988644
No 57
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=72.64 E-value=11 Score=39.51 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcccccccc-----------------hhHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1435 FLASSLKEIMRVNTFEFFVP-----------------KVAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1435 ~~~~~l~~im~~~~~~~f~~-----------------kv~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
.|...|..++...+..|.-| =...|+.|+++|+|.+ +..+..||..|+.+|..+-+
T Consensus 7 ~L~~~~~~~~~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s--~~ef~~Dv~LI~~Na~~YN~ 79 (99)
T cd05508 7 LLKFALERMKQPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGS--TDAFLADAKWILHNAIIYNG 79 (99)
T ss_pred HHHHHHHHHhCcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 34444444444666667665 1248999999999987 78899999999999988744
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=72.55 E-value=4.1 Score=49.68 Aligned_cols=65 Identities=28% Similarity=0.484 Sum_probs=51.6
Q ss_pred eeeecCCCCCCchhHHHHHHHhhccccccceEEecccccCChhHHHHHHHhCCCccEEeecccccccc
Q 000079 1250 RQVDLSSVGPNCTDSLIRKTLNAFDKEKLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFGE 1317 (2396)
Q Consensus 1250 ~~vdls~~g~~ctd~~~~~~~~~y~~~~~~~~~l~~c~n~~~~~l~~~l~~~p~~~~~~i~gc~q~~~ 1317 (2396)
..+||+.-+. .||..|..|.+. =.+++.+.|.+|.++|...|..|...+|.|++++|++|.++.+
T Consensus 246 ~~l~l~~~~~-isd~~l~~l~~~--c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 246 KSLDLSGCGL-VTDIGLSALASR--CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred Cccchhhhhc-cCchhHHHHHhh--CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 3456654333 788888887755 2378888899999999999999999999999999999999744
No 59
>smart00444 GYF Contains conserved Gly-Tyr-Phe residues. Proline-binding domain in CD2-binding protein. Contains conserved Gly-Tyr-Phe residues.
Probab=71.06 E-value=3.7 Score=39.15 Aligned_cols=43 Identities=23% Similarity=0.406 Sum_probs=39.9
Q ss_pred cEEEeccCCcccCchhhhhhhhhhhcCcccccchhhccCCCCc
Q 000079 642 KWFYLDHCGMECGPSRLCDLKTLVEEGVLVSDHFIKHLDSNRW 684 (2396)
Q Consensus 642 kWfyld~~G~e~gp~~l~~lk~l~~~g~l~~dh~ikh~d~~~w 684 (2396)
.|+|.|..|..|||=--..+..--++|++-.+..|++.+....
T Consensus 2 ~W~Y~d~~~~iqGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~ 44 (56)
T smart00444 2 LWLYKDPDGEIQGPFTASQMSQWYQAGYFPDSLQIKRLNEPPY 44 (56)
T ss_pred EEEEECCCCCEeCCcCHHHHHHHHHCCCCCCCeEEEEcCCCCC
Confidence 5999999999999999999999999999999999999987733
No 60
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=70.65 E-value=3.1 Score=55.54 Aligned_cols=8 Identities=50% Similarity=0.808 Sum_probs=3.6
Q ss_pred ccCCCCCc
Q 000079 470 REKSPYDR 477 (2396)
Q Consensus 470 rerSP~~R 477 (2396)
|+|+|++|
T Consensus 353 rer~prRr 360 (1194)
T KOG4246|consen 353 RERIPRRR 360 (1194)
T ss_pred hhcchHhh
Confidence 44444443
No 61
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=67.64 E-value=12 Score=36.42 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=31.1
Q ss_pred HHHHhhhccccccccCCcchhhHHHHHHHHHHHhccCC
Q 000079 1457 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 1494 (2396)
Q Consensus 1457 ~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~~~ 1494 (2396)
..|+.|+++|+|. .+..+..||..|+.+|+.+.+.+
T Consensus 46 ~~I~~kl~~~~Y~--s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 46 STIKKKLKNGEYK--SLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHCCCC
Confidence 4899999999995 67788999999999999975544
No 62
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=66.66 E-value=13 Score=38.35 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhcccccccch------------------hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1434 EFLASSLKEIMRVNTFEFFVPK------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1434 ~~~~~~l~~im~~~~~~~f~~k------------------v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
.|...-|.+||+......|+-- ...|+.|+++|+|.+ +..+..|+..|..+|.++-+
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s--~~ef~~D~~li~~Na~~yN~ 77 (97)
T cd05503 3 ALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKT--LEEFAEDVRLVFDNCETFNE 77 (97)
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 4677888999999888877632 248999999999955 57789999999999988744
No 63
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=66.11 E-value=13 Score=39.80 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhcccccccch------------------hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhccCC
Q 000079 1433 EEFLASSLKEIMRVNTFEFFVPK------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 1494 (2396)
Q Consensus 1433 ~~~~~~~l~~im~~~~~~~f~~k------------------v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~~~ 1494 (2396)
-+++..-|.+||+......|.-. +..|+.|+++|+|.+ +..+..|+..|..+|..+-..+
T Consensus 14 ~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s--~~~f~~Dv~LI~~Na~~yN~~~ 91 (115)
T cd05504 14 LSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKL--AEEFLSDIQLVFSNCFLYNPEH 91 (115)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 46778888999987777666432 238999999999987 6688999999999998875433
No 64
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.50 E-value=22 Score=44.66 Aligned_cols=9 Identities=22% Similarity=0.386 Sum_probs=3.9
Q ss_pred chhhccccc
Q 000079 778 EIETLGELK 786 (2396)
Q Consensus 778 e~e~~~~~~ 786 (2396)
+||++|=|+
T Consensus 359 ~fE~~GYVM 367 (426)
T KOG2812|consen 359 SFECVGYVM 367 (426)
T ss_pred hhhhcceee
Confidence 344444444
No 65
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=63.30 E-value=22 Score=38.17 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHh--cccccccc-----------------hhHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1434 EFLASSLKEIMRV--NTFEFFVP-----------------KVAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1434 ~~~~~~l~~im~~--~~~~~f~~-----------------kv~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
+++..-|.++|+- .+.-|.-| =...|+.|+++|.|.+ +..+..|+..|+.+|..+-.
T Consensus 10 ~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s--~~ef~~D~~Li~~N~~~yN~ 85 (112)
T cd05510 10 ESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKS--KAEFVDDLNLIWKNCLLYNS 85 (112)
T ss_pred HHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 4566667777775 34445444 1248999999999987 78999999999999988643
No 66
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=63.20 E-value=18 Score=37.76 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhHHHHHHHHHHHhccCC
Q 000079 1434 EFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 1494 (2396)
Q Consensus 1434 ~~~~~~l~~im~~~~~~~f~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~~~ 1494 (2396)
++...-|.+||+-.....|.-.| ..|+.|+++|.|.+ +..+.+|+..|+.+|.++-+.+
T Consensus 3 ~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s--~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 3 QKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSS--VQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 45667788888866555555323 37999999999977 4789999999999998875433
No 67
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=62.70 E-value=6.3 Score=52.39 Aligned_cols=9 Identities=22% Similarity=1.021 Sum_probs=4.3
Q ss_pred ccccccc-cc
Q 000079 219 KGEFIPD-RW 227 (2396)
Q Consensus 219 KGEfi~~-rw 227 (2396)
-|-||+- +|
T Consensus 664 ~~q~vstskw 673 (877)
T KOG0151|consen 664 EGQAVSTSKW 673 (877)
T ss_pred cccccchhhh
Confidence 3445554 45
No 68
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=60.42 E-value=2.2 Score=48.53 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=11.5
Q ss_pred CCCCchhhccccccCCCC
Q 000079 609 DGPPLEELVSMEEDMDIC 626 (2396)
Q Consensus 609 ~gpppeEl~SmeeDmDIc 626 (2396)
+|..+|| +-|-.=|-||
T Consensus 137 eg~eeEe-iEMmk~MGf~ 153 (196)
T KOG3263|consen 137 EGKEEEE-IEMMKIMGFS 153 (196)
T ss_pred cCCCHHH-HHHHHHhCcC
Confidence 4444555 6787888888
No 69
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=60.37 E-value=25 Score=36.73 Aligned_cols=59 Identities=20% Similarity=0.381 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhcccccccc----h----------------hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhc
Q 000079 1432 MEEFLASSLKEIMRVNTFEFFVP----K----------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAK 1491 (2396)
Q Consensus 1432 ~~~~~~~~l~~im~~~~~~~f~~----k----------------v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~ 1491 (2396)
+-+|+...|..||+.-....|.- . ...|+.|+++|.|. -+..+..||..|+.+|..+-
T Consensus 5 ~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~--s~~~f~~D~~li~~Na~~yN 82 (103)
T cd05500 5 QHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYT--SVEEFTADFNLMVDNCLTFN 82 (103)
T ss_pred HHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHC
Confidence 34788889999999876666652 1 24899999999995 56789999999999998875
Q ss_pred c
Q 000079 1492 N 1492 (2396)
Q Consensus 1492 ~ 1492 (2396)
+
T Consensus 83 ~ 83 (103)
T cd05500 83 G 83 (103)
T ss_pred C
Confidence 4
No 70
>PF15440 THRAP3_BCLAF1: THRAP3/BCLAF1 family
Probab=60.12 E-value=56 Score=44.24 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=13.8
Q ss_pred ccccceeeec-chhhHHHHHHHhcchHH
Q 000079 1092 TMHPQFIGYT-RGKLHELVMKSYKNREF 1118 (2396)
Q Consensus 1092 ~~hpqf~gyt-~gklhe~vmk~~k~r~~ 1118 (2396)
+||--|-=|- ++-.-| ||.=|+.|+
T Consensus 490 TL~ERFt~yq~~a~e~e--~k~~ksPEI 515 (646)
T PF15440_consen 490 TLNERFTKYQRKAAENE--IKPRKSPEI 515 (646)
T ss_pred cHHHHHHHhhhhhhHhh--hhccCCccc
Confidence 5666666666 333333 366666554
No 71
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=59.07 E-value=7.5 Score=42.45 Aligned_cols=43 Identities=30% Similarity=0.434 Sum_probs=36.1
Q ss_pred hcccccccc-hhHHHHhhhccccccccCCcchhhHHHHHHHHHHHh
Q 000079 1446 VNTFEFFVP-KVAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKA 1490 (2396)
Q Consensus 1446 ~~~~~~f~~-kv~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~ 1490 (2396)
.-+--||+| -...||.||.+|||.. ...+..||..|..||..+
T Consensus 56 ~~tgk~~y~MDL~tIe~RL~ng~Y~t--p~~F~~DiklI~~Nc~~y 99 (119)
T cd05491 56 TASGKKFYNMDLDTIEERLWNGYYAT--PKDFLKDIKRIVRDAKTI 99 (119)
T ss_pred ecCCCeEeccCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHh
Confidence 345667777 6889999999999987 566789999999999886
No 72
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=58.90 E-value=27 Score=37.01 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhcccccccc----h----------------hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhc
Q 000079 1432 MEEFLASSLKEIMRVNTFEFFVP----K----------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAK 1491 (2396)
Q Consensus 1432 ~~~~~~~~l~~im~~~~~~~f~~----k----------------v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~ 1491 (2396)
|.-+|..-|..||+......|.- + ...|+.|+++|+|.+ +..+..||..|+.+|..+-
T Consensus 6 ~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s--~~ef~~D~~li~~Na~~yN 83 (107)
T cd05497 6 LQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWS--ASECIQDFNTMFTNCYIYN 83 (107)
T ss_pred HHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCC--HHHHHHHHHHHHHHHHHHC
Confidence 44455566888998777666642 1 248999999999976 4588999999999999875
Q ss_pred c
Q 000079 1492 N 1492 (2396)
Q Consensus 1492 ~ 1492 (2396)
.
T Consensus 84 ~ 84 (107)
T cd05497 84 K 84 (107)
T ss_pred C
Confidence 4
No 73
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=57.04 E-value=25 Score=37.24 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHh-ccccccc-c---h----------------hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhc
Q 000079 1433 EEFLASSLKEIMRV-NTFEFFV-P---K----------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAK 1491 (2396)
Q Consensus 1433 ~~~~~~~l~~im~~-~~~~~f~-~---k----------------v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~ 1491 (2396)
-..|..-|..+|+. -....|. | + ...|+.||++|.|.+ +..+..|+..|+.+|..+-
T Consensus 5 ~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s--~~ef~~D~~li~~Na~~yN 82 (108)
T cd05495 5 RQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQD--PWQYVDDVWLMFDNAWLYN 82 (108)
T ss_pred HHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHC
Confidence 35666777888887 4444443 2 2 238999999999986 7789999999999999875
Q ss_pred c
Q 000079 1492 N 1492 (2396)
Q Consensus 1492 ~ 1492 (2396)
.
T Consensus 83 ~ 83 (108)
T cd05495 83 R 83 (108)
T ss_pred C
Confidence 4
No 74
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=56.10 E-value=7.3 Score=49.92 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=30.4
Q ss_pred ccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCC
Q 000079 1925 RICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNS 1967 (2396)
Q Consensus 1925 FINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~ 1967 (2396)
+.||+|++ +.......+ ..+-+++.++|.+||||.++||.
T Consensus 239 ~~NH~~~~-~~~~~~~~d--~~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 239 LLNHSPEV-IKAGYNQED--EAVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred hhccCchh-ccccccCCC--CcEEEEEeeeecCCCeEEEecCC
Confidence 78999999 222111112 38889999999999999999996
No 75
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=52.19 E-value=38 Score=35.08 Aligned_cols=57 Identities=16% Similarity=0.311 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcccccccc------------------hhHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1434 EFLASSLKEIMRVNTFEFFVP------------------KVAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1434 ~~~~~~l~~im~~~~~~~f~~------------------kv~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
.+|..-|..||+......|.- =...|+.|+++|+|.+ +..+..||..|+.+|..+-+
T Consensus 4 ~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s--~~~f~~Dv~li~~Na~~yN~ 78 (101)
T cd05509 4 TQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVT--LEEFVADLKLIFDNCRLYNG 78 (101)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 456677778888777766642 1238999999999974 67789999999999987644
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=47.39 E-value=28 Score=42.68 Aligned_cols=111 Identities=22% Similarity=0.201 Sum_probs=70.9
Q ss_pred CccccCcchHHHHHHHHhhhchhHHHHhhhh-c----hhHHHHHHhhcccceeeecCC-CCCCchhHHHHHHHhhccccc
Q 000079 1204 GGWGLLDGHTLAHVFHFLRSDMKSLAFASLT-C----RHWRAAVRFYKGISRQVDLSS-VGPNCTDSLIRKTLNAFDKEK 1277 (2396)
Q Consensus 1204 ~~w~~l~g~~larvfh~lr~d~ksl~~~~~t-c----~~w~~~~~~~~~~~~~vdls~-~g~~ctd~~~~~~~~~y~~~~ 1277 (2396)
-.|....+.+...+.+.|-.....|-.-.+. | ..|..++-....-...+||+. ....+......-.+ +-.-.+
T Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~ 244 (482)
T KOG1947|consen 166 LSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLL-LSICRK 244 (482)
T ss_pred eeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhh-hhhcCC
Confidence 3455555555555555555443333322111 2 223455556666667788876 33333333222223 233378
Q ss_pred cceEEecccccCChhHHHHHHHhCCCccEEeecccccc
Q 000079 1278 LNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQF 1315 (2396)
Q Consensus 1278 ~~~~~l~~c~n~~~~~l~~~l~~~p~~~~~~i~gc~q~ 1315 (2396)
+..+-|.+|.+||..+|+.|...+|.|.++.+.+|.+.
T Consensus 245 L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~l 282 (482)
T KOG1947|consen 245 LKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNL 282 (482)
T ss_pred cCccchhhhhccCchhHHHHHhhCCCcceEccCCCCcc
Confidence 99999999999999999999999999999999999983
No 77
>KOG1869 consensus Splicing coactivator SRm160/300, subunit SRm300 [RNA processing and modification]
Probab=47.30 E-value=46 Score=42.44 Aligned_cols=8 Identities=25% Similarity=0.584 Sum_probs=3.1
Q ss_pred CCCCCCcC
Q 000079 387 DKYSSRHH 394 (2396)
Q Consensus 387 e~ysrr~~ 394 (2396)
+.|+++.-
T Consensus 242 ks~k~rke 249 (425)
T KOG1869|consen 242 KSYKRRKE 249 (425)
T ss_pred hhhccccc
Confidence 33444433
No 78
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=46.64 E-value=14 Score=37.86 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=36.3
Q ss_pred hhhhhcc-ccCCCccccCCcCcccccccccccCCcc----ceeeecccCccC
Q 000079 1703 YAEKLNA-QKNGSEELDMELPEVKDYKPRKQLGDQV----FEQEVYGIDPYT 1749 (2396)
Q Consensus 1703 ~~Ekl~~-~~ngt~e~~~~~PelK~Y~prKvLG~DV----iEqel~GcDcyT 1749 (2396)
+.|.+|+ ++|.+| ....|+-++|.++.+.+..+ ......||+|..
T Consensus 7 G~E~~pI~~vN~vD--~~~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~ 56 (98)
T smart00468 7 GKENVPVPLVNEVD--EDPPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSG 56 (98)
T ss_pred CccCCCcceEecCC--CCCCCCCcEECcceEcCCCcccccCCCCCCCCcCCC
Confidence 7899998 889988 44667888999988888744 566788999887
No 79
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=45.39 E-value=5.2 Score=45.74 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=5.7
Q ss_pred ccccCCCCCCCCC
Q 000079 497 DRARFHDRSDRTP 509 (2396)
Q Consensus 497 dRsR~~drRdRTP 509 (2396)
||-|++-+|.+||
T Consensus 77 dR~R~~r~rs~Sp 89 (196)
T KOG3263|consen 77 DRERKKRRRSVSP 89 (196)
T ss_pred HHHHHhhhcccCC
Confidence 3344444444444
No 80
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=45.35 E-value=43 Score=36.46 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhHHHHHHHHHHHhc
Q 000079 1432 MEEFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAK 1491 (2396)
Q Consensus 1432 ~~~~~~~~l~~im~~~~~~~f~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~ 1491 (2396)
+.+.+..-|..+|+......|.--| ..|+.||++|+|.. +..+..|+..|+.+|..+-
T Consensus 6 w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~--~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 6 WKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDD--PMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHC
Confidence 3456667788888877665554322 48999999999975 6789999999999998874
No 81
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=44.33 E-value=57 Score=33.64 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcccccccc----h----------------hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1436 LASSLKEIMRVNTFEFFVP----K----------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1436 ~~~~l~~im~~~~~~~f~~----k----------------v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
...-|..+|+......|.- . ...|+.||++|.|.+ +..+..|+..|..+|+.+-.
T Consensus 5 c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s--~~ef~~D~~li~~Na~~yn~ 79 (99)
T cd05506 5 CGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSS--PEEFAADVRLTFANAMRYNP 79 (99)
T ss_pred HHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 4456778888777666652 1 138999999999987 77789999999999988643
No 82
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=42.72 E-value=34 Score=36.34 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=31.8
Q ss_pred hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhccCC
Q 000079 1456 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRG 1494 (2396)
Q Consensus 1456 v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~~~ 1494 (2396)
...|+.||++|.|.+ +..+..|+..|+.+|.++-..+
T Consensus 51 L~tI~~kl~~~~Y~s--~~ef~~D~~l~f~Na~~yn~~~ 87 (106)
T cd05525 51 LSTIEKQILTGYYKT--PEAFDSDMLKVFRNAEKYYGRK 87 (106)
T ss_pred HHHHHHHHcCCCCCC--HHHHHHHHHHHHHHHHHHCCCC
Confidence 358999999999987 8889999999999998874433
No 83
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=42.35 E-value=69 Score=33.37 Aligned_cols=58 Identities=19% Similarity=0.421 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHh----cccccccc--h-----------------hHHHHhhhccccccccCCcchhhHHHHHHHHHHHh
Q 000079 1434 EFLASSLKEIMRV----NTFEFFVP--K-----------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKA 1490 (2396)
Q Consensus 1434 ~~~~~~l~~im~~----~~~~~f~~--k-----------------v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~ 1490 (2396)
++...-|.++|+. .+..|..| + ...|+.||++|.|. -+..+..|+..|..+|..+
T Consensus 3 ~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~--s~~ef~~D~~li~~N~~~y 80 (102)
T cd05499 3 KFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQ--SAKEFERDVRLIFKNCYTF 80 (102)
T ss_pred HHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCC--CHHHHHHHHHHHHHHHHHH
Confidence 4666778888884 23334333 2 24899999999996 4668899999999999887
Q ss_pred ccC
Q 000079 1491 KNR 1493 (2396)
Q Consensus 1491 ~~~ 1493 (2396)
-..
T Consensus 81 n~~ 83 (102)
T cd05499 81 NPE 83 (102)
T ss_pred CCC
Confidence 543
No 84
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.65 E-value=9 Score=47.74 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=9.7
Q ss_pred CCCCCcCCCCCCcCCCcc
Q 000079 479 RHYDHRNRSPFSAERSPQ 496 (2396)
Q Consensus 479 r~~~~R~RSP~r~erSP~ 496 (2396)
.|.++|+.++.|+++-++
T Consensus 450 ~hyS~~~~~e~rr~~~dR 467 (479)
T KOG0415|consen 450 DHYSHRDKSEERRERYDR 467 (479)
T ss_pred ccchhcccchhhcccchh
Confidence 445555555555555553
No 85
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=40.47 E-value=70 Score=33.24 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=30.0
Q ss_pred HHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1457 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1457 ~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
..|+.|+++|.|. .+..+..||..|+.+|..+-.
T Consensus 49 ~~I~~kl~~~~Y~--s~~ef~~D~~li~~Na~~yn~ 82 (102)
T cd05498 49 STIKKKLDNREYA--DAQEFAADVRLMFSNCYKYNP 82 (102)
T ss_pred HHHHHHHccCCCC--CHHHHHHHHHHHHHHHHHHCC
Confidence 4899999999996 578899999999999988744
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=38.85 E-value=23 Score=45.55 Aligned_cols=44 Identities=27% Similarity=0.527 Sum_probs=38.5
Q ss_pred ccceEEecccccCChhHHHHHHHhCCCccEEeeccccccccccc
Q 000079 1277 KLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFGELAL 1320 (2396)
Q Consensus 1277 ~~~~~~l~~c~n~~~~~l~~~l~~~p~~~~~~i~gc~q~~~l~~ 1320 (2396)
++..+-..+|++++-..|..+-+..+.|..+-|.||.||++.-.
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f 338 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF 338 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh
Confidence 34556678899999999999999999999999999999998643
No 87
>smart00466 SRA SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
Probab=36.84 E-value=9.2 Score=43.24 Aligned_cols=24 Identities=29% Similarity=0.037 Sum_probs=21.0
Q ss_pred cCCCCcccccccc-----cccccccccCC
Q 000079 1646 TTDEGLDFSDDRE-----WGARMTKASLV 1669 (2396)
Q Consensus 1646 ~~~dgl~~i~~~~-----~G~~m~k~~lv 1669 (2396)
..|||||.|.+.| .|..++|++|+
T Consensus 122 yrYDGLY~V~~~w~e~g~~G~~v~kfkL~ 150 (155)
T smart00466 122 YIYDGLYRIVDYWREVGKSGFLVFKFKLV 150 (155)
T ss_pred EEECcEEEEEEEEEecCCCCcEEEEEEEE
Confidence 4589999998877 88899999997
No 88
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=36.74 E-value=32 Score=31.17 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=29.1
Q ss_pred ccceEEecccccCChhHHHHHHHhCCCccEEeecccccccccc
Q 000079 1277 KLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFGELA 1319 (2396)
Q Consensus 1277 ~~~~~~l~~c~n~~~~~l~~~l~~~p~~~~~~i~gc~q~~~l~ 1319 (2396)
+++.+.|.+| +|+. |...|..+|.|.+++++|| +|.++.
T Consensus 2 ~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNN-QITD--LPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCC-CCcc--cCchHhCCCCCCEEEecCC-CCCCCc
Confidence 5677888777 6663 6666899999999999999 676553
No 89
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=33.03 E-value=83 Score=33.72 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=39.9
Q ss_pred HHHHHHHHhcccccccch----------------hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhc
Q 000079 1438 SSLKEIMRVNTFEFFVPK----------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAK 1491 (2396)
Q Consensus 1438 ~~l~~im~~~~~~~f~~k----------------v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~ 1491 (2396)
.-|.++++...-.+|.+. ...|+.|+++|.|.+ +..+..|+..|..+|..+-
T Consensus 9 ~il~~l~~~~~s~~f~~~p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s--~~ef~~D~~Lif~N~~~yN 76 (102)
T cd05501 9 FLLLKVYCMSKSGFFISKPYYIRDYCQGIKEPMWLNKVKERLNERVYHT--VEGFVRDMRLIFHNHKLFY 76 (102)
T ss_pred HHHHHHHhCcccccccCCCCCCCchHHHcCCCCCHHHHHHHHcCCCCCC--HHHHHHHHHHHHHHHHHHc
Confidence 346677766666666441 238999999999976 6779999999999998873
No 90
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=32.98 E-value=23 Score=37.70 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=5.5
Q ss_pred CCCCCCCccccc
Q 000079 169 PEKSQPQSQLQS 180 (2396)
Q Consensus 169 ~e~~~~~~~~~~ 180 (2396)
||+.+|.|+|+-
T Consensus 101 eekkegkgeieg 112 (138)
T PF05663_consen 101 EEKKEGKGEIEG 112 (138)
T ss_pred hhhcccCCcccc
Confidence 444444444443
No 91
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=31.78 E-value=65 Score=34.02 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=30.7
Q ss_pred hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1456 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1456 v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
...|+.|+++|+|.+ +..+..|+..|..+|..+-.
T Consensus 49 L~tI~~kl~~~~Y~s--~~ef~~D~~l~~~Na~~yN~ 83 (105)
T cd05515 49 MEKIRSKIEGNQYQS--LDDMVSDFVLMFDNACKYNE 83 (105)
T ss_pred HHHHHHHHccCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 458999999999966 78899999999999988754
No 92
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=31.69 E-value=32 Score=27.06 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=17.1
Q ss_pred CccEEeeccccccccccccCCc
Q 000079 1303 HLSSIDIRGCGQFGELALKFPN 1324 (2396)
Q Consensus 1303 ~~~~~~i~gc~q~~~l~~~f~~ 1324 (2396)
.|.++||+|| +|.++...|.+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4789999999 98888777664
No 93
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.84 E-value=40 Score=40.22 Aligned_cols=57 Identities=25% Similarity=0.385 Sum_probs=45.6
Q ss_pred chhHHHHHH--HhhccccccceEEecccccCChhHHHHHHHhCCCccEEeecccccccc
Q 000079 1261 CTDSLIRKT--LNAFDKEKLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFGE 1317 (2396)
Q Consensus 1261 ctd~~~~~~--~~~y~~~~~~~~~l~~c~n~~~~~l~~~l~~~p~~~~~~i~gc~q~~~ 1317 (2396)
|+|+-|-++ =|==+-..|+++.|.-|.++-...|+.|-..+|+|..+||.||-+..+
T Consensus 108 Asds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 108 ASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred cCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 455543322 233356789999999999999999999999999999999999998544
No 94
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=30.80 E-value=30 Score=26.58 Aligned_cols=11 Identities=55% Similarity=1.467 Sum_probs=9.9
Q ss_pred cceEEecCCCC
Q 000079 995 GEWYYLDGAGH 1005 (2396)
Q Consensus 995 g~w~yldg~g~ 1005 (2396)
|.|||++..|.
T Consensus 8 ~~wYy~~~~G~ 18 (19)
T PF01473_consen 8 GNWYYFDSDGY 18 (19)
T ss_dssp TEEEEETTTSB
T ss_pred CEEEEeCCCcc
Confidence 89999999885
No 95
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=29.67 E-value=74 Score=33.71 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=29.8
Q ss_pred HHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1457 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1457 ~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
..|+.|+++|.|.+ +..+..|+..|+.+|..+-.
T Consensus 50 ~tI~~kl~~~~Y~s--~~ef~~D~~li~~Na~~yN~ 83 (103)
T cd05518 50 KTIEHNIRNDKYAT--EEELMDDFKLMFRNARHYNE 83 (103)
T ss_pred HHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 48999999999986 56789999999999988744
No 96
>PF14878 DLD: Death-like domain of SPT6; PDB: 3PSI_A 3PSF_A.
Probab=29.43 E-value=52 Score=36.07 Aligned_cols=87 Identities=23% Similarity=0.318 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHH---HHh----hCcHHHHhhhHHhhhhhhhchhhhhhcchHHHHHhhhhhccceeeeeeehhHHH
Q 000079 2049 NWVVAYSARLVRFINL---ERT----KLPEEILRHNLEEKRKYFSDICLEVEKSDAEVQAEGVYNQRLQNLAVTLDKVRY 2121 (2396)
Q Consensus 2049 ~WL~k~aA~ilryI~~---Er~----~Lp~ell~~~l~ekrk~~~~~~~~~e~~dAe~eA~gv~~~RiQNlaiTLDKVRy 2121 (2396)
+|..+-|+.++++-.. |.. .+ ++++.. .....+.+++++. =|..+-.+.-+|--.||--||-
T Consensus 15 ~lArkmA~DAle~deed~~~~~~~~~av-~~~~~~---~~p~kL~~LdLd~-------yA~~Le~~~~~~K~~TL~~Ir~ 83 (115)
T PF14878_consen 15 DLARKMAADALEYDEEDIAEDEDPSGAV-EEIMED---DRPEKLNDLDLDE-------YAEELERQGGGNKRATLYDIRS 83 (115)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHH-HT-T-THHHHT---THHHHHTTS-HHH-------HHHHHHHHHS---HHHHHHHHH
T ss_pred HHHHHHHHHHHhcChhhhcchhhHHHHH-HHHHcc---ccHHHHhhcCHHH-------HHHHHHHhcCCcHHHHHHHHHH
Confidence 5777888888776543 111 11 222321 1122244555432 2334444566788899999999
Q ss_pred HHhhccCCCCCCCCCcccCChHHHHHHH
Q 000079 2122 VMRCVFGDPKKAPPPVERLSPEETVSFL 2149 (2396)
Q Consensus 2122 vL~~~~gdp~~a~PPL~~Lt~~evv~~L 2149 (2396)
-|++.|.+. .+||..+|++|+|.-|
T Consensus 84 EL~~pf~d~---R~~f~~pt~de~F~ml 108 (115)
T PF14878_consen 84 ELQHPFEDL---RKPFREPTPDEIFTML 108 (115)
T ss_dssp HHHSTT------SB----B-HHHHHHHH
T ss_pred HHhCccccc---ccCCCCCCHHHhhhHh
Confidence 999987554 4799999999998654
No 97
>KOG1862 consensus GYF domain containing proteins [General function prediction only]
Probab=27.00 E-value=70 Score=43.40 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=46.7
Q ss_pred cEEEeccCCcccCchhhhhhhhhhhcCcccccchhhccCCCC---ceeeeccCCCcc
Q 000079 642 KWFYLDHCGMECGPSRLCDLKTLVEEGVLVSDHFIKHLDSNR---WETVENAVSPLV 695 (2396)
Q Consensus 642 kWfyld~~G~e~gp~~l~~lk~l~~~g~l~~dh~ikh~d~~~---w~t~e~a~sp~~ 695 (2396)
.|+|.|.-|.=+||-...++-.--..||...||.|+-.+... ..|+.=....+.
T Consensus 205 ~~~Y~DP~g~iqGPf~~~~v~~W~~~GyF~~~l~vr~~e~~~~~~f~tl~~~~~~l~ 261 (673)
T KOG1862|consen 205 SWLYKDPQGQIQGPFSASDVLQWYEAGYFPDDLQVRLGENPERSIFQTLGEVMQLLK 261 (673)
T ss_pred eEEeeCCCCcccCCchHHHHHHHHhcCccCCCceeeeccCCccccceehhhhhhhcc
Confidence 699999999999999999999999999999998888888887 777655544444
No 98
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=25.91 E-value=22 Score=46.20 Aligned_cols=129 Identities=12% Similarity=-0.012 Sum_probs=83.9
Q ss_pred EEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCC-CCcceEEeecCCCCCCCCCceEEEcCcccCCccc
Q 000079 1846 VVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDP-APEFYNIYLERPKGDADGYDLVVVDAMHKANYAS 1924 (2396)
Q Consensus 1846 VFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~-~~dFY~myL~r~~gD~dGyd~lvIDATrkGNiAR 1924 (2396)
..+-.. +..|+||+.++|+..-.. ++-..+.. ....... ...||.. ..+..++.++...|+..+
T Consensus 130 ~~~~~~--~~~~~~vw~~vg~~~~~~-c~vc~~~~---~~~~~~~~~~~f~~~---------~~~~~~~~~~~~~g~~~~ 194 (463)
T KOG1081|consen 130 CRAFKK--REVGDLVWSKVGEYPWWP-CMVCHDPL---LPKGMKHDHVNFFGC---------YAWTHEKRVFPYEGQSSK 194 (463)
T ss_pred eeeecc--ccceeEEeEEcCcccccc-cceecCcc---cchhhccccceeccc---------hhhHHHhhhhhccchHHH
Confidence 455544 899999999999985321 00000000 0000000 1122211 112224566666999999
Q ss_pred ccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCe------EEEecCCCCCCcccccCeeEEeCCCCccccccc
Q 000079 1925 RICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEE------ITFDYNSVTESKEEYEASVCLCGSQVCRGSYLN 1993 (2396)
Q Consensus 1925 FINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEE------LTFDYg~~~eskeE~ek~~CLCGS~nCRGs~L~ 1993 (2396)
+++|+|.|+-.+..+......++..++.+.+..+.- ++.+|...... ..+.|.|.+..|.-.++.
T Consensus 195 ~l~~~~~~~s~~~~~~~~~~~r~~~~~~q~~~~~~~~e~k~~~~~~~~~~~~~----~~~~~~~~~~~~~~k~~~ 265 (463)
T KOG1081|consen 195 LIPHSKKPASTMSEKIKEAKARFGKLKAQWEAGIKQKELKPEEYKRIKVVCPI----GDQQIYSAAVSCIKKLLA 265 (463)
T ss_pred hhhhccccchhhhhhhhcccchhhhcccchhhccchhhcccccccccccccCc----Ccccccchhhhhhhhccc
Confidence 999999999999999999999999999999988887 77777765542 234588888888775543
No 99
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=25.62 E-value=1.1e+02 Score=35.75 Aligned_cols=64 Identities=25% Similarity=0.214 Sum_probs=40.7
Q ss_pred cceeeecCCCCCCchhHHHHHHHhhccc--cccceEEecccccCC---hhHHHHHHHhCCCccEEeeccccc
Q 000079 1248 ISRQVDLSSVGPNCTDSLIRKTLNAFDK--EKLNSILLVGCTNIT---SGMLEEILQSFPHLSSIDIRGCGQ 1314 (2396)
Q Consensus 1248 ~~~~vdls~~g~~ctd~~~~~~~~~y~~--~~~~~~~l~~c~n~~---~~~l~~~l~~~p~~~~~~i~gc~q 1314 (2396)
.-+.+|||. -..+|..+..|..+..+ .+++.+-|.+| .|+ ..++.+.+..+|.|.++|+++|.-
T Consensus 222 ~L~~L~ls~--n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 222 SLEVLNLGD--NNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred CCCEEecCC--CcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 346677765 34566555555555443 67778888777 443 445556666677788888877653
No 100
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=24.93 E-value=34 Score=36.49 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=17.8
Q ss_pred Cccc-CCCCCCCCccccc--cchhhcccc
Q 000079 164 GEFV-QPEKSQPQSQLQS--QSKQIEKGE 189 (2396)
Q Consensus 164 Ge~v-~~e~~~~~~~~~~--~~~eiE~GE 189 (2396)
||+. +||+.+|.|+|+- .++|+|||-
T Consensus 108 geiegkeekkegkgeiegkeekkevengp 136 (138)
T PF05663_consen 108 GEIEGKEEKKEGKGEIEGKEEKKEVENGP 136 (138)
T ss_pred CcccchhhhhccccccccchhhhhhccCC
Confidence 4443 5778888888876 345777763
No 101
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=24.13 E-value=56 Score=26.49 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=19.2
Q ss_pred ccceEEecccccCChhHHHHHH
Q 000079 1277 KLNSILLVGCTNITSGMLEEIL 1298 (2396)
Q Consensus 1277 ~~~~~~l~~c~n~~~~~l~~~l 1298 (2396)
+|+.+-|.+|.+||...|..|-
T Consensus 3 ~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 3 NLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCEeCCCCCCCcCHHHHHHHh
Confidence 6788999999999999998774
No 102
>KOG1869 consensus Splicing coactivator SRm160/300, subunit SRm300 [RNA processing and modification]
Probab=24.00 E-value=2.4e+02 Score=36.55 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCccccccc
Q 000079 515 SPLHRSRPNNHREASSKT 532 (2396)
Q Consensus 515 SP~dR~R~~~rre~s~k~ 532 (2396)
.|.+..+...--++++++
T Consensus 380 ~p~r~e~~~~k~e~s~~~ 397 (425)
T KOG1869|consen 380 APIRVEKSAEKVEKSRKS 397 (425)
T ss_pred cccccccccchhccCccc
Confidence 333333333333333333
No 103
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=22.84 E-value=1.1e+02 Score=32.89 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=29.2
Q ss_pred HHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1457 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1457 ~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
..|+.|+++|.|.+ +..+..|+..|+.+|..+-.
T Consensus 52 ~tI~~kl~~~~Y~s--~~~f~~D~~lm~~Na~~yN~ 85 (113)
T cd05524 52 LKIQQKLKTEEYDD--VDDLTADFELLINNAKAYYK 85 (113)
T ss_pred HHHHHHhCcCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 48999999999974 56689999999999988744
No 104
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=22.76 E-value=1.5e+02 Score=31.47 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=30.1
Q ss_pred hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1456 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1456 v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
...|+.|+++|+|.. +..+..|+..|+.+|..+-.
T Consensus 49 L~tI~~kl~~~~Y~s--~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 49 LQQIRTKLKNGEYET--LEELEADLNLMFENAKRYNV 83 (103)
T ss_pred HHHHHHHHccCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 458999999999976 55789999999999998754
No 105
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=22.01 E-value=2.9e+02 Score=29.34 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=39.7
Q ss_pred HHHHHHHHHhccccccc-c----------------hhHHHHhhhcc---ccccccCCcchhhHHHHHHHHHHHhccCC
Q 000079 1437 ASSLKEIMRVNTFEFFV-P----------------KVAEIEGRMKK---GYYISHGLGSVKDDISRMCRDAIKAKNRG 1494 (2396)
Q Consensus 1437 ~~~l~~im~~~~~~~f~-~----------------kv~~ie~~~k~---gyy~~~g~~~~k~di~~~~r~a~~~~~~~ 1494 (2396)
..-|.++|+......|. | =...|+.|+++ |+|. .+..+..|+..|..+|..+-+.+
T Consensus 10 ~~il~~l~~~~~s~~F~~pv~~~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~--s~~~f~~D~~li~~Na~~yN~~~ 85 (109)
T cd05502 10 ERLLLELYCHELSLPFHEPVSPSVPNYYKIIKTPMDLSLIRKKLQPKSPQHYS--SPEEFVADVRLMFKNCYKFNEED 85 (109)
T ss_pred HHHHHHHHhCCCChhhcCCCCCCCCCHHHHCCCCccHHHHHHHHhcCCCCCCC--CHHHHHHHHHHHHHHHHHHCCCC
Confidence 34556777754444443 3 12389999999 5886 66779999999999998875533
No 106
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=21.93 E-value=1.3e+02 Score=31.87 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=30.1
Q ss_pred hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1456 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1456 v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
...|+.|+++|.| +-+..+..|+..|..+|..+-.
T Consensus 50 l~tI~~kl~~~~Y--~s~~~f~~D~~li~~Na~~yn~ 84 (104)
T cd05522 50 LDDIKKKVKRRKY--KSFDQFLNDLNLMFENAKLYNE 84 (104)
T ss_pred HHHHHHHHccCCC--CCHHHHHHHHHHHHHHHHHHCC
Confidence 3589999999999 4677899999999999988744
No 107
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=21.89 E-value=1.3e+02 Score=32.03 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=30.0
Q ss_pred hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1456 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1456 v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
...|+.|+++|.|. -+..+..|+..|+.+|..+-.
T Consensus 50 l~tI~~kl~~~~Y~--s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05516 50 FKKIKERIRNHKYR--SLEDLEKDVMLLCQNAQTFNL 84 (107)
T ss_pred HHHHHHHHccCCCC--CHHHHHHHHHHHHHHHHHHCC
Confidence 34899999999996 477799999999999988744
No 108
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=21.68 E-value=1.1e+02 Score=40.56 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=6.1
Q ss_pred HHHHHHHHhhccc
Q 000079 1012 FSELQVLVDQGCI 1024 (2396)
Q Consensus 1012 ~selq~~v~~g~i 1024 (2396)
|+|+-+=|.+.+-
T Consensus 419 yeeIlEdvr~ec~ 431 (500)
T KOG0120|consen 419 YEEILEDVRTECA 431 (500)
T ss_pred HHHHHHHHHHHhc
Confidence 4555544444443
No 109
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=20.11 E-value=1.2e+02 Score=41.70 Aligned_cols=11 Identities=18% Similarity=0.175 Sum_probs=4.4
Q ss_pred ccccCccccCc
Q 000079 196 KCRRGETEKGE 206 (2396)
Q Consensus 196 ~~rr~e~e~gE 206 (2396)
.|.+--|+|-|
T Consensus 116 lwqkn~VfK~e 126 (894)
T KOG0132|consen 116 LWQKNNVFKSE 126 (894)
T ss_pred hhhcccchhHH
Confidence 44444443333
Done!