Query 000079
Match_columns 2396
No_of_seqs 346 out of 1594
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 13:33:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hna_A Histone-lysine N-methyl 100.0 7.5E-37 2.6E-41 350.0 12.2 249 1692-1990 25-287 (287)
2 3h6l_A Histone-lysine N-methyl 100.0 3.2E-36 1.1E-40 343.8 15.8 170 1797-1993 87-258 (278)
3 3bo5_A Histone-lysine N-methyl 100.0 5.5E-36 1.9E-40 343.2 17.6 251 1700-1991 15-285 (290)
4 1ml9_A Histone H3 methyltransf 100.0 3.5E-36 1.2E-40 345.8 13.5 265 1703-1991 6-301 (302)
5 1mvh_A Cryptic LOCI regulator 100.0 1.2E-35 4E-40 341.7 16.9 250 1703-1992 24-298 (299)
6 3ope_A Probable histone-lysine 100.0 2.4E-35 8.2E-40 326.0 17.2 168 1801-1994 47-216 (222)
7 3ooi_A Histone-lysine N-methyl 100.0 1.3E-35 4.3E-40 330.6 14.5 163 1802-1991 67-231 (232)
8 2r3a_A Histone-lysine N-methyl 100.0 2.5E-34 8.5E-39 331.1 17.1 240 1705-1991 40-299 (300)
9 2w5y_A Histone-lysine N-methyl 100.0 2.2E-31 7.5E-36 290.3 13.8 140 1832-1991 52-191 (192)
10 3f9x_A Histone-lysine N-methyl 99.9 2.1E-27 7E-32 249.9 12.7 126 1831-1970 29-155 (166)
11 2f69_A Histone-lysine N-methyl 99.9 6.1E-23 2.1E-27 232.9 13.4 142 1800-1970 83-235 (261)
12 3s8p_A Histone-lysine N-methyl 99.9 6.1E-24 2.1E-28 242.5 4.1 129 1835-1990 139-267 (273)
13 1n3j_A A612L, histone H3 lysin 99.9 2.6E-22 9E-27 202.5 5.7 109 1832-1972 4-112 (119)
14 1h3i_A Histone H3 lysine 4 spe 99.8 3.4E-21 1.2E-25 219.6 12.3 114 1834-1970 165-289 (293)
15 2qpw_A PR domain zinc finger p 99.8 4.6E-21 1.6E-25 202.4 9.5 109 1834-1970 31-146 (149)
16 3rq4_A Histone-lysine N-methyl 99.8 1.4E-20 4.9E-25 212.5 5.5 125 1835-1989 111-235 (247)
17 3ep0_A PR domain zinc finger p 99.6 1E-14 3.6E-19 157.4 11.7 107 1840-1970 37-148 (170)
18 3db5_A PR domain zinc finger p 99.5 1.6E-14 5.5E-19 152.8 8.2 108 1840-1970 32-144 (151)
19 3dal_A PR domain zinc finger p 99.5 1.1E-14 3.6E-19 160.4 5.7 119 1840-1992 68-191 (196)
20 3ray_A PR domain-containing pr 99.3 1.5E-12 5.2E-17 146.7 6.0 122 1835-1989 75-201 (237)
21 3ihx_A PR domain zinc finger p 99.2 1.2E-11 4.1E-16 131.5 6.9 107 1840-1969 28-142 (152)
22 3qwp_A SET and MYND domain-con 98.4 1.8E-07 6.2E-12 112.3 5.7 65 1921-1989 200-269 (429)
23 3n71_A Histone lysine methyltr 98.4 8.4E-08 2.9E-12 117.3 2.9 66 1922-1989 200-281 (490)
24 3qww_A SET and MYND domain-con 98.2 5.1E-07 1.7E-11 109.1 5.0 62 1922-1989 201-269 (433)
25 2ast_B S-phase kinase-associat 97.5 0.00016 5.5E-09 81.1 8.9 106 1202-1313 5-129 (336)
26 2p1m_B Transport inhibitor res 97.3 0.00048 1.6E-08 82.9 10.0 124 1202-1330 2-163 (594)
27 3ogk_B Coronatine-insensitive 96.5 0.0045 1.5E-07 74.7 8.4 36 1208-1244 15-50 (592)
28 1fs1_A SKP2 F-BOX, cyclin A/CD 96.0 0.0038 1.3E-07 55.0 3.4 40 1202-1243 5-44 (53)
29 3qxy_A N-lysine methyltransfer 95.5 0.0083 2.8E-07 73.3 4.7 43 1921-1967 221-263 (449)
30 1wh2_A Hypothetical protein AT 95.5 0.0046 1.6E-07 60.3 2.0 48 995-1042 18-65 (78)
31 2h21_A Ribulose-1,5 bisphospha 94.8 0.0092 3.1E-07 72.1 2.4 47 1922-1968 189-242 (440)
32 3k3v_A Protein SMY2; GYF domai 94.1 0.019 6.4E-07 58.5 2.4 52 995-1046 16-75 (100)
33 3smt_A Histone-lysine N-methyl 92.2 0.065 2.2E-06 66.5 3.4 44 1922-1968 272-315 (497)
34 2i7k_A Bromodomain-containing 88.6 0.61 2.1E-05 48.0 6.3 65 1426-1492 3-85 (117)
35 3dai_A ATPase family AAA domai 86.2 1.6 5.6E-05 45.4 7.9 68 1425-1494 4-89 (130)
36 3d7c_A General control of amin 86.0 1.3 4.5E-05 44.8 6.9 61 1431-1493 7-85 (112)
37 3e4g_A ATP synthase subunit S, 85.4 0.41 1.4E-05 52.5 3.1 64 1249-1317 63-129 (176)
38 3e4g_A ATP synthase subunit S, 85.2 0.63 2.2E-05 51.1 4.4 68 1249-1318 87-155 (176)
39 2d9e_A Peregrin; four-helix bu 84.6 1.3 4.3E-05 45.8 6.1 62 1429-1492 5-84 (121)
40 3rcw_A Bromodomain-containing 84.0 1.5 5.3E-05 45.7 6.6 62 1429-1492 11-90 (135)
41 3k3v_A Protein SMY2; GYF domai 83.4 0.45 1.5E-05 48.6 2.2 49 640-688 15-71 (100)
42 3v7d_B Cell division control p 83.2 0.53 1.8E-05 54.4 3.0 37 1205-1243 14-50 (464)
43 1wh2_A Hypothetical protein AT 82.4 0.49 1.7E-05 46.4 1.9 46 637-682 14-59 (78)
44 2dkw_A Hypothetical protein KI 82.1 3.9 0.00013 43.0 8.6 68 1426-1495 7-87 (131)
45 3hme_A Bromodomain-containing 81.7 1.4 4.9E-05 45.5 5.1 61 1430-1492 12-90 (123)
46 3l2o_B F-box only protein 4; s 81.3 0.62 2.1E-05 55.4 2.6 38 1204-1243 3-40 (312)
47 3ljw_A Protein polybromo-1; al 80.5 2.8 9.6E-05 43.0 6.8 65 1426-1492 3-91 (120)
48 1e6i_A Transcriptional activat 79.8 2.6 8.9E-05 43.4 6.3 58 1434-1493 16-91 (121)
49 2ri7_A Nucleosome-remodeling f 79.6 2.5 8.6E-05 45.4 6.4 57 1434-1492 75-149 (174)
50 2oss_A HUNK1 protein, bromodom 79.5 3 0.0001 43.4 6.7 60 1431-1492 21-100 (127)
51 3aad_A Transcription initiatio 79.3 2 6.9E-05 50.2 5.9 67 1425-1493 41-125 (292)
52 4alg_A Bromodomain-containing 78.5 5 0.00017 43.1 8.2 60 1431-1492 32-111 (154)
53 3fkm_X Signaling protein; brom 77.0 3 0.0001 45.3 6.0 61 1430-1492 20-100 (166)
54 3nxb_A CAT eye syndrome critic 76.8 3.4 0.00011 42.1 6.0 57 1434-1492 19-93 (116)
55 2e31_A FBS1, F-box only protei 76.4 1.3 4.6E-05 52.2 3.4 39 1203-1243 48-87 (297)
56 2dat_A Possible global transcr 75.9 6.1 0.00021 40.8 7.7 35 1457-1493 63-97 (123)
57 1p22_A F-BOX/WD-repeat protein 75.7 1.4 4.7E-05 51.1 3.2 35 1207-1243 12-50 (435)
58 3mb3_A PH-interacting protein; 75.2 4.5 0.00015 42.3 6.6 61 1430-1492 20-98 (135)
59 3p1f_A CREB-binding protein; s 75.0 5.7 0.00019 40.6 7.1 61 1430-1492 10-91 (119)
60 2ast_B S-phase kinase-associat 74.5 4.6 0.00016 45.4 6.9 36 1277-1312 169-205 (336)
61 2ovr_B FBW7, F-BOX/WD repeat p 72.7 1.7 5.7E-05 50.4 2.9 38 1204-1243 17-54 (445)
62 3g0l_A Hwalp4, bromodomain adj 71.9 5.5 0.00019 40.6 6.2 57 1434-1492 16-90 (117)
63 2grc_A Probable global transcr 70.5 7.7 0.00026 40.4 7.0 61 1431-1493 11-96 (129)
64 3q2e_A Bromodomain and WD repe 67.9 7.8 0.00027 39.9 6.3 58 1432-1491 11-86 (123)
65 3iu5_A Protein polybromo-1; PB 67.0 7.7 0.00026 39.5 6.0 34 1457-1492 55-88 (116)
66 3mb4_A Protein polybromo-1; PB 64.8 14 0.00047 38.2 7.4 34 1457-1492 65-98 (124)
67 3mqm_A Probable histone-lysine 64.5 14 0.00047 38.2 7.4 34 1457-1492 59-92 (126)
68 3jvl_A Bromodomain-containing 63.4 10 0.00035 38.7 6.2 34 1457-1492 58-91 (120)
69 3ogk_B Coronatine-insensitive 63.1 12 0.00041 45.4 7.7 60 1249-1313 465-524 (592)
70 1syx_B CD2BP2, CD2 antigen cyt 59.7 5.3 0.00018 40.0 3.1 48 996-1044 27-80 (86)
71 2ouo_A HUNK1 protein, bromodom 56.0 9.4 0.00032 39.9 4.4 35 1457-1493 71-105 (130)
72 3tlp_A Protein polybromo-1; PB 53.6 21 0.00071 37.9 6.6 34 1457-1492 75-108 (150)
73 3k2j_A Protein polybromo-1; PB 52.1 30 0.001 36.3 7.4 34 1457-1492 67-100 (130)
74 3uv5_A Transcription initiatio 51.4 20 0.00068 41.3 6.5 61 1431-1493 14-92 (265)
75 2yyn_A Transcription intermedi 51.1 23 0.00077 37.2 6.3 58 1434-1493 23-99 (135)
76 3uv4_A Second bromodomain of h 51.0 20 0.0007 38.7 6.1 34 1457-1492 74-107 (158)
77 3o36_A Transcription intermedi 50.8 16 0.00056 39.7 5.4 56 1435-1492 85-159 (184)
78 2p1m_B Transport inhibitor res 46.8 25 0.00087 42.5 6.8 60 1249-1314 434-493 (594)
79 3q0b_X Histone-lysine N-methyl 29.4 7.6 0.00026 42.7 -1.3 24 1646-1669 125-153 (167)
80 3iu6_A Protein polybromo-1; PB 28.4 51 0.0018 35.9 4.7 61 1456-1530 52-112 (147)
81 1z7x_W Ribonuclease inhibitor; 27.7 84 0.0029 36.8 6.8 66 1248-1317 342-412 (461)
82 3lqh_A Histone-lysine N-methyl 27.0 46 0.0016 37.1 4.2 32 1457-1490 108-139 (183)
83 2r10_A Chromatin structure-rem 24.1 89 0.003 37.7 6.2 62 1430-1494 77-158 (361)
84 1a9n_A U2A', U2A'; complex (nu 23.4 22 0.00075 36.9 0.8 86 1262-1351 5-93 (176)
85 3a79_B TLR6, VLRB.59, TOLL-lik 22.9 51 0.0017 40.3 3.9 87 1250-1351 34-126 (562)
86 3uv5_A Transcription initiatio 21.8 71 0.0024 36.8 4.6 35 1456-1492 180-214 (265)
87 3fde_A E3 ubiquitin-protein li 21.3 12 0.00041 42.7 -1.7 54 1647-1708 142-204 (212)
88 2r0y_A Chromatin structure-rem 21.3 63 0.0022 38.4 4.1 35 1456-1492 206-240 (311)
89 3oln_A E3 ubiquitin-protein li 21.1 13 0.00044 42.9 -1.6 23 1647-1669 166-194 (231)
90 2r0y_A Chromatin structure-rem 20.8 1.2E+02 0.0041 36.1 6.3 60 1431-1493 28-107 (311)
91 1z7x_W Ribonuclease inhibitor; 20.8 1.4E+02 0.0047 35.1 6.8 64 1249-1316 229-297 (461)
92 2r10_A Chromatin structure-rem 20.6 65 0.0022 38.8 4.2 35 1456-1492 256-290 (361)
93 3aad_A Transcription initiatio 20.0 74 0.0025 37.3 4.3 35 1456-1492 213-247 (292)
No 1
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=100.00 E-value=7.5e-37 Score=350.02 Aligned_cols=249 Identities=18% Similarity=0.182 Sum_probs=177.7
Q ss_pred hhhcccccchh--hhhhhcc-ccCCCccccCCcCcccccccccccCCc----cceeeecccCccCcccccccCCCccccc
Q 000079 1692 RRKMRVSLPED--YAEKLNA-QKNGSEELDMELPEVKDYKPRKQLGDQ----VFEQEVYGIDPYTHNLLLDSMPDELDWN 1764 (2396)
Q Consensus 1692 ~~km~v~lpd~--~~Ekl~~-~~ngt~e~~~~~PelK~Y~prKvLG~D----ViEqel~GcDcyTr~~I~~sLP~el~Ws 1764 (2396)
+.+++|+++|. +.|.+|+ ++|.+| +-..|.-++|.++.+++.. .......||+|.. .|....|+|
T Consensus 25 ~~~~~~~~~Dis~G~E~~pi~~~N~vD--~~~~p~~f~Y~~~~~~~~~~~~~~~~~~~~gC~C~~-~C~~~~C~C----- 96 (287)
T 3hna_A 25 SPVERIVSRDIARGYERIPIPCVNAVD--SEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCID-DCSSSNCMC----- 96 (287)
T ss_dssp CCCCEEEESCTTTTCSSSCCCEEESSS--SCCCCCSSEECSSCEESSCCCCCCBGGGCCCCCCSS-SSCSTTCHH-----
T ss_pred cccCCEEhHhhCCCCCCCCEEEEeCCC--CCCCCCCcEEccccccCCCccccccCCCCCCCcCcC-CCCCCCCcC-----
Confidence 44577888886 9999999 999998 4456888888887665542 2234567999974 333222322
Q ss_pred hhhhchhhHHHHHHHHhhhccccCCCCCCCCC--CCCCCccccc-CCcCccCCCchhhhcccccccccccCCCcceecCC
Q 000079 1765 LLEKHLFIEDVLLRTLNKQVRHFTGTGNTPMM--YPLQPVIEEI-EKEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYR 1841 (2396)
Q Consensus 1765 ~~qKn~FIek~LL~tLNkqvRhf~G~g~tP~~--c~ckPViEC~-eC~Cge~C~NRllQ~Cq~ilk~i~r~PleVFrT~~ 1841 (2396)
.+.+. .......|.- .+.. .....++||. .|.|+..|.||++|.+.. .++++|.+..
T Consensus 97 -~~~~~-----------~~~y~~~g~l-~~~~~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~-------~~l~v~~t~~ 156 (287)
T 3hna_A 97 -GQLSM-----------RCWYDKDGRL-LPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLR-------ARLQLYRTRD 156 (287)
T ss_dssp -HHHTS-----------SCCBCTTSCB-CTTCCSSSCCCEECCCTTSSSCTTCSSCSGGGCCC-------SCEEEEECSS
T ss_pred -cccCc-----------ccccCCCCcc-cccccccCCceEEecCCCCCCCCCCCCcccCcCCc-------ccEEEEEcCC
Confidence 11110 0000001110 1111 1122368995 899999999999987543 4789999999
Q ss_pred ccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCcccCC
Q 000079 1842 KGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKAN 1921 (2396)
Q Consensus 1842 KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDATrkGN 1921 (2396)
|||||||+++ |++|+||+||+|||++..++..+ ..+.|.+.+....+ ..++|||+.+||
T Consensus 157 kG~Gv~A~~~--I~~G~~I~eY~Gevi~~~e~~~r--------------~~~~Y~f~l~~~~~-----~~~~IDa~~~GN 215 (287)
T 3hna_A 157 MGWGVRSLQD--IPPGTFVCEYVGELISDSEADVR--------------EEDSYLFDLDNKDG-----EVYCIDARFYGN 215 (287)
T ss_dssp SSEEEEESSC--BCTTCEEEEECEEEEEHHHHHTC--------------SCCTTEEESCCSSS-----SCEEEEEEEEEC
T ss_pred CceEEEeCcc--cCCCCEEEEeeeEEccHHHHhhh--------------cccceEEEeccCCC-----ceEEEeccccCC
Confidence 9999999987 99999999999999986543221 12346555554322 248999999999
Q ss_pred cccccCCCCCCCeEEEEEEECC----EEEEEEEEcCCCCCCCeEEEecCCCCCCcccccCeeEEeCCCCcccc
Q 000079 1922 YASRICHSCRPNCEAKVTAVDG----HYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGS 1990 (2396)
Q Consensus 1922 iARFINHSCdPNCeaq~v~VnG----e~RIgfFAlRDI~pGEELTFDYg~~~eskeE~ek~~CLCGS~nCRGs 1990 (2396)
+||||||||+|||.++.+++.+ .++|+|||+|||++||||||||+..++... ...+.|+|||++|||+
T Consensus 216 ~aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~dYg~~~~~~~-~~~~~C~CGs~~CRgs 287 (287)
T 3hna_A 216 VSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIK-GKLFSCRCGSPKCRHS 287 (287)
T ss_dssp GGGGCEECSSCSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEECCCHHHHHHH-TTTCCCCCCCTTCSCC
T ss_pred chheeeecCCCCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEEeCCCcccccC-CCcCEeeCCCCCCCCC
Confidence 9999999999999998776654 479999999999999999999997554322 2468999999999984
No 2
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=100.00 E-value=3.2e-36 Score=343.75 Aligned_cols=170 Identities=28% Similarity=0.489 Sum_probs=141.7
Q ss_pred CCCCC-ccccc-CCcCccCCCchhhhcccccccccccCCCcceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhh
Q 000079 1797 YPLQP-VIEEI-EKEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWF 1874 (2396)
Q Consensus 1797 c~ckP-ViEC~-eC~Cge~C~NRllQ~Cq~ilk~i~r~PleVFrT~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ 1874 (2396)
|.+.. ++||. .|.|+..|.||++|.... .++++|.+..+||||||+++ |++|+||+||+||||+..++.
T Consensus 87 C~nr~~~~EC~~~C~C~~~C~Nr~~q~g~~-------~~leV~~t~~kG~Gl~A~~~--I~~G~~I~EY~Gevi~~~e~~ 157 (278)
T 3h6l_A 87 CLNRLLMIECSSRCPNGDYCSNRRFQRKQH-------ADVEVILTEKKGWGLRAAKD--LPSNTFVLEYCGEVLDHKEFK 157 (278)
T ss_dssp CTTGGGTBCCCTTCTTGGGCSSCTTTTTCC-------CCEEEEECSSSCEEEEESSC--BCTTCEEEECCCEEECHHHHH
T ss_pred CCCcceEeccCCCCCcCCCCCCccccCCCc-------cCEEEEEcCCCceEEEeCCc--cCCCCEeEEeeeeecCHHHHH
Confidence 44443 57995 888999999999986543 47899999999999999987 999999999999999987766
Q ss_pred hhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEEcCC
Q 000079 1875 EKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRG 1954 (2396)
Q Consensus 1875 ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDATrkGNiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRD 1954 (2396)
++...+.. ....++|++.+... ++|||+.+||+||||||||+|||+++.|.++|.++|+|||+||
T Consensus 158 ~R~~~y~~------~~~~~~y~~~l~~~---------~~IDa~~~GN~aRFiNHSC~PN~~~~~~~v~g~~ri~~fA~Rd 222 (278)
T 3h6l_A 158 ARVKEYAR------NKNIHYYFMALKND---------EIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKL 222 (278)
T ss_dssp HHHHHHHH------TTCCCCCEEEEETT---------EEEECSSEECGGGGCEECSSCSEEEEEEEETTEEEEEEEESSC
T ss_pred HHHHHHHh------ccCccceeecccCC---------eEEeCcccCChhhhcccCCCCCceeEEEEeCCceEEEEEECCc
Confidence 55433221 12345677666532 7999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEecCCCCCCcccccCeeEEeCCCCccccccc
Q 000079 1955 IHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLN 1993 (2396)
Q Consensus 1955 I~pGEELTFDYg~~~eskeE~ek~~CLCGS~nCRGs~L~ 1993 (2396)
|.+||||||||++..+.. ..+.|+||+++|||++.+
T Consensus 223 I~~GEELT~dY~~~~~~~---~~~~C~CGs~~Crg~l~~ 258 (278)
T 3h6l_A 223 VPSGSELTFDYQFQRYGK---EAQKCFCGSANCRGYLGG 258 (278)
T ss_dssp BCTTCBCEECCTTTEECS---SCEECCCCCTTCCSEECC
T ss_pred cCCCCEEEEecCCCcCCC---CCcEeECCCCCCeeecCC
Confidence 999999999999876542 468999999999996654
No 3
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=100.00 E-value=5.5e-36 Score=343.19 Aligned_cols=251 Identities=18% Similarity=0.197 Sum_probs=173.4
Q ss_pred chh--hhhhhcc-ccCCCccccCCcCcccccccccccCCcc----ceeeecccCccCcccccccCCCccccchhhhc-hh
Q 000079 1700 PED--YAEKLNA-QKNGSEELDMELPEVKDYKPRKQLGDQV----FEQEVYGIDPYTHNLLLDSMPDELDWNLLEKH-LF 1771 (2396)
Q Consensus 1700 pd~--~~Ekl~~-~~ngt~e~~~~~PelK~Y~prKvLG~DV----iEqel~GcDcyTr~~I~~sLP~el~Ws~~qKn-~F 1771 (2396)
+|. +.|.+|+ ++|. + ..|.-++|.+..++++.+ .+....||+|....|....|+|- .++ .|
T Consensus 15 ~Dis~G~E~~pi~~~n~-~----~~p~~f~Y~~~~~~~~~~~~~~~~~~~~gC~C~~~~C~~~~C~C~------~~~~~y 83 (290)
T 3bo5_A 15 LDVACGQENLPVGAWPP-G----AAPAPFQYTPDHVVGPGADIDPTQITFPGCICVKTPCLPGTCSCL------RHGENY 83 (290)
T ss_dssp SCTTTTCSSSCCEEEST-T----CCCCCCEECSSCEECTTCSSCTTSCCCCCCCCCSSCCCTTTCGGG------TTSCSB
T ss_pred hhhhCCCCCCceeeECC-C----CCCCCcEEeeceecCCCCcCCcccccCCCCCCCCCCcCCCCCcch------hhcCcc
Confidence 454 8899999 7776 2 357778888877776532 34446899998655544444441 111 12
Q ss_pred hHHHHHHHHhhhccccCCCCCCCCCCCCCCccccc-CCcCccCCCchhhhcccccccccccCCCcceecCCccceEEeCc
Q 000079 1772 IEDVLLRTLNKQVRHFTGTGNTPMMYPLQPVIEEI-EKEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVVCNK 1850 (2396)
Q Consensus 1772 Iek~LL~tLNkqvRhf~G~g~tP~~c~ckPViEC~-eC~Cge~C~NRllQ~Cq~ilk~i~r~PleVFrT~~KGwGVFAte 1850 (2396)
... ..++. .| ...-...+++||. .|.|+..|.||++|.+.. .++++|.+..+||||||++
T Consensus 84 ~~~-------~~l~~-~~----~~~~~~~~~~EC~~~C~C~~~C~Nr~~q~g~~-------~~l~V~~s~~~G~Gl~A~~ 144 (290)
T 3bo5_A 84 DDN-------SCLRD-IG----SGGKYAEPVFECNVLCRCSDHCRNRVVQKGLQ-------FHFQVFKTHKKGWGLRTLE 144 (290)
T ss_dssp CTT-------SCBCC----------CCCCCEECCCTTCCSCTTCTTCCGGGCCC-------SCEEEEECSSSSEEEEESS
T ss_pred Ccc-------ccccc-cc----cccccCCceEeCCCCCCCCCCCCCeEcccCCc-------ccEEEEEcCCCcceEeECC
Confidence 110 00000 00 0011234688995 889999999999986533 4789999999999999998
Q ss_pred cCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCcccCCcccccCCCC
Q 000079 1851 EGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSC 1930 (2396)
Q Consensus 1851 DegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDATrkGNiARFINHSC 1930 (2396)
+ |++|+||+||+||||+..++.++.. .+ +.....|.+.+..+.... ....++|||+.+||+||||||||
T Consensus 145 ~--I~~G~~I~EY~Gevi~~~e~~~R~~------~~--~~~~~~Y~~~l~~~~~~~-~~~~~~IDa~~~GN~arfiNHSC 213 (290)
T 3bo5_A 145 F--IPKGRFVCEYAGEVLGFSEVQRRIH------LQ--TKSDSNYIIAIREHVYNG-QVMETFVDPTYIGNIGRFLNHSC 213 (290)
T ss_dssp C--BCTTCEEEECCEEEECHHHHHHHHT------TC--CSSCCCCCEEEEECC------EEEEEEEEEEECGGGGCEECS
T ss_pred c--cCCCCEEEEEeeEEeCHHHHHHHHH------hh--cccCCcceeeecccccCC-ccceeEEeeeecCCchheeeecC
Confidence 7 9999999999999999765543321 11 112233544443321111 11237999999999999999999
Q ss_pred CCCeEEEEEEECC-EEEEEEEEcCCCCCCCeEEEecCCCCCCcc----------cccCeeEEeCCCCccccc
Q 000079 1931 RPNCEAKVTAVDG-HYQIGIYTVRGIHYGEEITFDYNSVTESKE----------EYEASVCLCGSQVCRGSY 1991 (2396)
Q Consensus 1931 dPNCeaq~v~VnG-e~RIgfFAlRDI~pGEELTFDYg~~~eske----------E~ek~~CLCGS~nCRGs~ 1991 (2396)
+|||.++.+.+++ .++|+|||+|||++||||||||+..++... ....+.|+|||++|||++
T Consensus 214 ~PN~~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~~~~~~~~~~~~C~CGs~~CrG~l 285 (290)
T 3bo5_A 214 EPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGAKSCTAFL 285 (290)
T ss_dssp SCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEECTTSCTTCCSSSEEEEEEECSSCCCBCCCCCTTCCSBC
T ss_pred CCCEEEEEEEeCCCceEEEEEEccccCCCCEEEEECCCccccccccccccccccCCCCccccCCCcCCCccC
Confidence 9999999988887 589999999999999999999997665310 123579999999999954
No 4
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=100.00 E-value=3.5e-36 Score=345.83 Aligned_cols=265 Identities=20% Similarity=0.266 Sum_probs=158.7
Q ss_pred hhhhhcc-ccCCCccccCCcCcccccccccccCCccce---eeecccCccCc-ccccccCCCccccchhhhchhhHHH-H
Q 000079 1703 YAEKLNA-QKNGSEELDMELPEVKDYKPRKQLGDQVFE---QEVYGIDPYTH-NLLLDSMPDELDWNLLEKHLFIEDV-L 1776 (2396)
Q Consensus 1703 ~~Ekl~~-~~ngt~e~~~~~PelK~Y~prKvLG~DViE---qel~GcDcyTr-~~I~~sLP~el~Ws~~qKn~FIek~-L 1776 (2396)
.+|++|+ ++|.+| +..+|.-+.|.++.+++..+.. ....||+|... .|....|+|-..+... ..++. .
T Consensus 6 ~~e~~pi~~~N~vd--~~~~P~~F~Yi~~~~~~~~~~~~~~~~~~gC~C~~~~~C~~~~C~C~~~~~~~----~~~~~~~ 79 (302)
T 1ml9_A 6 THAQLPISIVNRED--DAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMAPD----SDEEADP 79 (302)
T ss_dssp ---CCCEEEECSSS--SCCCCTTCEECSSCEECTTCCCCCGGGCCCCCCSSTTGGGSTTSGGGTTSCCC-----------
T ss_pred cCCCCCEEEEeCCC--CCCCCCCCEEeeeeecCCCccccCcccCCCccCcCCCCcCCCCCcChhhcccc----ccccccc
Confidence 4688988 999998 5567888999998888775533 22479999762 4544333332111100 00000 0
Q ss_pred HHHHhhhccccCCCCCCCCCC------CCCCccccc-CCcCccCCCchhhhcccccccccccCCCcceecCCccceEEeC
Q 000079 1777 LRTLNKQVRHFTGTGNTPMMY------PLQPVIEEI-EKEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVVCN 1849 (2396)
Q Consensus 1777 L~tLNkqvRhf~G~g~tP~~c------~ckPViEC~-eC~Cge~C~NRllQ~Cq~ilk~i~r~PleVFrT~~KGwGVFAt 1849 (2396)
+.....- .+...+...... .-.+++||. .|.|+..|.||++|.+.. .++++|++..+||||||+
T Consensus 80 ~~~~~~~--~y~~~g~~~g~l~~~~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~-------~~l~v~~t~~kG~Gv~A~ 150 (302)
T 1ml9_A 80 YTRKKRF--AYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRT-------VPLQIFRTKDRGWGVKCP 150 (302)
T ss_dssp ----CCS--SBBCSSTTBTSBCHHHHHHCCCEECCCTTCSSCTTCTTCHHHHCCC-------SCEEEEECSSSCEEEECS
T ss_pred ccccccc--ccccCCcccceeehhcccCCCCeEecCCCCCCCCCCCCcccccCCc-------cceEEEEcCCCceEEEEC
Confidence 0000000 000000001111 124578995 789999999999997543 478999999999999999
Q ss_pred ccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCC------ceEEEcCcccCCcc
Q 000079 1850 KEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGY------DLVVVDAMHKANYA 1923 (2396)
Q Consensus 1850 eDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGy------d~lvIDATrkGNiA 1923 (2396)
++ |++|+||+||+||||+..++.++.... ......+.|.+.+....+. ... ..++|||+.+||+|
T Consensus 151 ~~--I~~G~~I~EY~Gevi~~~e~~~R~~~~------~~~~~~~~Y~f~l~~~~~~-~~~d~~~~~~~~~IDa~~~GN~a 221 (302)
T 1ml9_A 151 VN--IKRGQFVDRYLGEIITSEEADRRRAES------TIARRKDVYLFALDKFSDP-DSLDPLLAGQPLEVDGEYMSGPT 221 (302)
T ss_dssp SC--BCTTCEEEECCCEEECHHHHHHHHHHS------CGGGCHHHHEEECCSSCCS-SSSCHHHHSCCCEEECSSEECGG
T ss_pred Ce--eCCCCEEEEEeeEEeCHHHHHHHHHHH------hhhcCCceEEEEeccccCc-ccccccccCCcEEEeCcccCCHH
Confidence 86 999999999999999987665543211 1112245677666542111 000 13799999999999
Q ss_pred cccCCCCCCCeEEEEEEEC----CEEEEEEEEcCCCCCCCeEEEecCCCCCCccc--------ccCeeEEeCCCCccccc
Q 000079 1924 SRICHSCRPNCEAKVTAVD----GHYQIGIYTVRGIHYGEEITFDYNSVTESKEE--------YEASVCLCGSQVCRGSY 1991 (2396)
Q Consensus 1924 RFINHSCdPNCeaq~v~Vn----Ge~RIgfFAlRDI~pGEELTFDYg~~~eskeE--------~ek~~CLCGS~nCRGs~ 1991 (2396)
|||||||+|||.++.+..+ +.++|+|||+|||++||||||||+..++.... ...+.|+|||++|||+|
T Consensus 222 rfiNHSC~PN~~~~~~~~~~~~~~~~~i~~~A~rdI~~GeELt~dY~~~~~~~~~~~~~~~k~~~~~~C~CGs~~Crg~l 301 (302)
T 1ml9_A 222 RFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRGYL 301 (302)
T ss_dssp GGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC--------------------------------
T ss_pred HhcccCCCCCeeEEEEEeccCCCCceEEEEEECCCcCCCCEEEEEECCCccccccccccccccCCCcEeeCCCCcCcccc
Confidence 9999999999998765443 24799999999999999999999987653211 12479999999999965
No 5
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=100.00 E-value=1.2e-35 Score=341.70 Aligned_cols=250 Identities=20% Similarity=0.223 Sum_probs=159.3
Q ss_pred hhhhhcc-ccCCCccccCCcCc-ccccccccccCCcccee---eecccCccC-ccccc---ccCCCccccchhhhchhhH
Q 000079 1703 YAEKLNA-QKNGSEELDMELPE-VKDYKPRKQLGDQVFEQ---EVYGIDPYT-HNLLL---DSMPDELDWNLLEKHLFIE 1773 (2396)
Q Consensus 1703 ~~Ekl~~-~~ngt~e~~~~~Pe-lK~Y~prKvLG~DViEq---el~GcDcyT-r~~I~---~sLP~el~Ws~~qKn~FIe 1773 (2396)
+.|++|+ ++|.+| +..+|. -+.|.++.+++..+... ...||+|.. ..|.. ..++|-..+.......|-.
T Consensus 24 g~e~~pi~~~N~vd--~~~~p~~~F~Yi~~~~~~~~~~~~~~~~~~gC~C~~~~~C~~~~~~~C~C~~~~~~~~~~~y~~ 101 (299)
T 1mvh_A 24 EIEGPEVTLVNEVD--DEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCECLDDLDEPTHFAYDA 101 (299)
T ss_dssp TSSSSCEEEECSSC--CCCCSCCCSEECSSCEECTTCCCCCGGGCCCCCCCCSSSSCTTCTTTCSSSTTCCSSCCCSBCT
T ss_pred CcCCCCEEEEeCCC--CCCCCCCCcEEccceecCCCcCcCCCcCCCCCcCcCCCCcCCCCCCCCccccccccccccccCC
Confidence 6789998 899998 345666 58888877776644422 237999874 24444 2233310010000011100
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCCCccccc-CCcCccCCCchhhhcccccccccccCCCcceecCCccceEEeCccC
Q 000079 1774 DVLLRTLNKQVRHFTGTGNTPMMYPLQPVIEEI-EKEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVVCNKEG 1852 (2396)
Q Consensus 1774 k~LL~tLNkqvRhf~G~g~tP~~c~ckPViEC~-eC~Cge~C~NRllQ~Cq~ilk~i~r~PleVFrT~~KGwGVFAteDe 1852 (2396)
.+..- ...-.+++||. .|.|+..|.||++|.+.. .++++|++..+||||||+++
T Consensus 102 ----------------~g~l~-~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~-------~~l~v~~t~~~G~Gv~A~~~- 156 (299)
T 1mvh_A 102 ----------------QGRVR-ADTGAVIYECNSFCSCSMECPNRVVQRGRT-------LPLEIFKTKEKGWGVRSLRF- 156 (299)
T ss_dssp ----------------TSSBC-TTCCSEEECCCTTSCSCTTCTTCTGGGCCC-------SCEEEEECSSSSEEEEESSC-
T ss_pred ----------------CCcee-ecCCCCeEeCCCCCCCCCCcCCcccccccc-------ccEEEEEcCCCcceEeeCce-
Confidence 00000 11123578995 899999999999997543 47899999999999999986
Q ss_pred CcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCcccCCcccccCCCCCC
Q 000079 1853 GFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRP 1932 (2396)
Q Consensus 1853 gI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDATrkGNiARFINHSCdP 1932 (2396)
|++|+||+||+||||+..++.++.. .+.. ....|.+.+..... ...++|||+.+||+||||||||+|
T Consensus 157 -I~kG~~I~EY~Gevi~~~ea~~R~~------~y~~--~~~~Y~f~l~~~~~----~~~~~IDa~~~GN~aRfiNHSC~P 223 (299)
T 1mvh_A 157 -APAGTFITCYLGEVITSAEAAKRDK------NYDD--DGITYLFDLDMFDD----ASEYTVDAQNYGDVSRFFNHSCSP 223 (299)
T ss_dssp -BCTTCEEEECCCEEEEHHHHHHHHT------TCCS--CSCCCEEEECSSCS----SSCEEEECSSEECGGGGCEECSSC
T ss_pred -eCCCCEEEEeeeEECcHHHHHHHHH------hhhc--cCceEEEEecCCCC----CccEEEeCcccCChhheEeecCCC
Confidence 9999999999999999866544332 1211 23456665543211 124899999999999999999999
Q ss_pred CeEEEEEEEC----CEEEEEEEEcCCCCCCCeEEEecCCCCCC--cc---------cccCeeEEeCCCCcccccc
Q 000079 1933 NCEAKVTAVD----GHYQIGIYTVRGIHYGEEITFDYNSVTES--KE---------EYEASVCLCGSQVCRGSYL 1992 (2396)
Q Consensus 1933 NCeaq~v~Vn----Ge~RIgfFAlRDI~pGEELTFDYg~~~es--ke---------E~ek~~CLCGS~nCRGs~L 1992 (2396)
||.++.+.++ +.++|+|||+|||.+||||||||+..++. .. ....+.|+|||++|||+|.
T Consensus 224 N~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~~~~~~~~k~~~~C~CGs~~Crg~l~ 298 (299)
T 1mvh_A 224 NIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWLF 298 (299)
T ss_dssp SEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTSSSSCCC----------------------------
T ss_pred CeEEEEEEeecCCCCceEEEEEEccCcCCCCEEEEEcCCcccccccccccccccccccCCcCcCCCCCCCccccC
Confidence 9999876665 46899999999999999999999987762 10 0112699999999999764
No 6
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=326.04 Aligned_cols=168 Identities=27% Similarity=0.492 Sum_probs=137.2
Q ss_pred Cccccc--CCcCccCCCchhhhcccccccccccCCCcceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhh
Q 000079 1801 PVIEEI--EKEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQD 1878 (2396)
Q Consensus 1801 PViEC~--eC~Cge~C~NRllQ~Cq~ilk~i~r~PleVFrT~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd 1878 (2396)
.++||. .|.|+..|.||++|.... ..++++|.++.|||||||+++ |++|+||+||+|||++..++.++..
T Consensus 47 ~~~EC~~~~C~C~~~C~Nr~~q~~~~------~~~lev~~t~~kG~Gl~A~~~--I~~G~~I~ey~Gevi~~~e~~~r~~ 118 (222)
T 3ope_A 47 IFAECSPNTCPCGEQCCNQRIQRHEW------VQCLERFRAEEKGWGIRTKEP--LKAGQFIIEYLGEVVSEQEFRNRMI 118 (222)
T ss_dssp GTBCCCTTTCTTTTSCSSCTTTTTCC------CSCCEEEECTTSSEEEECSSC--BCTTCEEEECCSEEECHHHHHHHHH
T ss_pred eEeEeCCCCCcCCCCCCCceEeCCCc------cccEEEEEcCCCceEEEECce--ECCCCEEEEecceecCHHHHHHHHH
Confidence 357996 599999999999986422 235899999999999999987 9999999999999999866544321
Q ss_pred hhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCC
Q 000079 1879 GIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYG 1958 (2396)
Q Consensus 1879 ~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDATrkGNiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pG 1958 (2396)
..+ ....++|.+.+... ++|||+.+||+||||||||+|||.++.|.+++.++|+|||+|||++|
T Consensus 119 -----~~~--~~~~~~y~~~l~~~---------~~IDa~~~Gn~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~G 182 (222)
T 3ope_A 119 -----EQY--HNHSDHYCLNLDSG---------MVIDSYRMGNEARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAG 182 (222)
T ss_dssp -----HTS--TTCCSCCEEEEETT---------EEEECSSEECGGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTT
T ss_pred -----HHh--cccCCeEEEecCCC---------EEEeCccccccceeeccCCCCCeEeEEEEECCeEEEEEEECCccCCC
Confidence 111 12345666666431 89999999999999999999999999999999999999999999999
Q ss_pred CeEEEecCCCCCCcccccCeeEEeCCCCcccccccC
Q 000079 1959 EEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNL 1994 (2396)
Q Consensus 1959 EELTFDYg~~~eskeE~ek~~CLCGS~nCRGs~L~~ 1994 (2396)
|||||||++..+... ..+.|+|||++|||+|.+.
T Consensus 183 EELT~dY~~~~~~~~--~~~~C~CGs~~Crg~i~~~ 216 (222)
T 3ope_A 183 TELTYDYNFHSFNVE--KQQLCKCGFEKCRGIIGGK 216 (222)
T ss_dssp CBCEECTTSSBCCCS--CCCBCCCCCTTCCSBCC--
T ss_pred CEEEEECCCcccCCc--CCCEeeCCCcCCCCccCCC
Confidence 999999998876432 4589999999999976543
No 7
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=330.57 Aligned_cols=163 Identities=25% Similarity=0.490 Sum_probs=138.0
Q ss_pred ccccc--CCcCccCCCchhhhcccccccccccCCCcceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhh
Q 000079 1802 VIEEI--EKEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDG 1879 (2396)
Q Consensus 1802 ViEC~--eC~Cge~C~NRllQ~Cq~ilk~i~r~PleVFrT~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~ 1879 (2396)
++||. .|.|+..|.||++|.... .++++|.+..+||||||+++ |++|+||+||+||||+..++.++...
T Consensus 67 ~~EC~~~~C~c~~~C~Nr~~q~~~~-------~~lev~~t~~kG~Gl~A~~~--I~~G~~I~ey~Gevi~~~e~~~r~~~ 137 (232)
T 3ooi_A 67 LYECHPTVCPAGGRCQNQCFSKRQY-------PEVEIFRTLQRGWGLRTKTD--IKKGEFVNEYVGELIDEEECRARIRY 137 (232)
T ss_dssp TBCCCTTTCTTGGGCCCCHHHHTCC-------CCEEEEECSSSSEEEEESSC--BCTTCEEEECCEEEECHHHHHHHHHH
T ss_pred eeEeCCCCCCCCCCcCCccccCCCC-------ccEEEEEcCCceeEEEECce--ecCCceeeEeeeeccCHHHHHHHHHH
Confidence 57885 589999999999986533 47899999999999999987 99999999999999998766554322
Q ss_pred hHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCC
Q 000079 1880 IRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGE 1959 (2396)
Q Consensus 1880 IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDATrkGNiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGE 1959 (2396)
.. . .....+|.+.+... ++|||+..||+||||||||+|||.++.|.+++.++|+|||+|||++||
T Consensus 138 ~~---~---~~~~~~y~~~l~~~---------~~IDa~~~Gn~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GE 202 (232)
T 3ooi_A 138 AQ---E---HDITNFYMLTLDKD---------RIIDAGPKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGT 202 (232)
T ss_dssp HH---H---TTCCCCCEEEEETT---------EEEEEEEEECGGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTC
T ss_pred Hh---h---cCCCceeeeecCcc---------eEEeccccccccccccccCCCCeEEEEEEECCceEEEEEECCccCCCC
Confidence 21 1 12456777766532 799999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCcccccCeeEEeCCCCccccc
Q 000079 1960 EITFDYNSVTESKEEYEASVCLCGSQVCRGSY 1991 (2396)
Q Consensus 1960 ELTFDYg~~~eskeE~ek~~CLCGS~nCRGs~ 1991 (2396)
||||||++.++.. ..+.|+|||++|||++
T Consensus 203 ELT~dY~~~~~~~---~~~~C~CGs~~CrG~l 231 (232)
T 3ooi_A 203 ELTFNYNLECLGN---GKTVCKCGAPNCSGFL 231 (232)
T ss_dssp BCEECCTTCSTTC---TTCBCCCCCTTCCSBC
T ss_pred EEEEECCCCcCCC---CCcEeECCCCcCcCcC
Confidence 9999999887643 4689999999999954
No 8
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=331.05 Aligned_cols=240 Identities=21% Similarity=0.276 Sum_probs=162.0
Q ss_pred hhhcc-ccCCCccccCCcCcccccccccccCCc--cceeeecccCccCcccccccCCCccccchhhhchhhHHHHHHHHh
Q 000079 1705 EKLNA-QKNGSEELDMELPEVKDYKPRKQLGDQ--VFEQEVYGIDPYTHNLLLDSMPDELDWNLLEKHLFIEDVLLRTLN 1781 (2396)
Q Consensus 1705 Ekl~~-~~ngt~e~~~~~PelK~Y~prKvLG~D--ViEqel~GcDcyTr~~I~~sLP~el~Ws~~qKn~FIek~LL~tLN 1781 (2396)
++.++ ++|.+| +-..|.-+.|..+.+++.. +......||+|.. |....+ +.....+.|
T Consensus 40 ~~~~i~~~N~vd--~~~~P~~f~yi~~~~~~~~~~~~~~~~~gC~C~~--C~~~~c-----c~~~~~~~~---------- 100 (300)
T 2r3a_A 40 HKGMIFVENTVD--LEGPPSDFYYINEYKPAPGISLVNEATFGCSCTD--CFFQKC-----CPAEAGVLL---------- 100 (300)
T ss_dssp SSSCEEEECSSS--CCCCCSSCEECSSCEECTTCCCC---CCCCCCSS--TTTSSC-----HHHHTTSCC----------
T ss_pred CCCCeEEEeCcC--CccCCCCEEECcccccCCCCccCCCCCCCcCCcC--CCCCCc-----chhhccCcc----------
Confidence 34455 788887 2245777888887776553 3245678999963 332211 111000000
Q ss_pred hhccccCCCCCCCCCCCCCCccccc-CCcCccCCCchhhhcccccccccccCCCcceecC-CccceEEeCccCCcCCCCE
Q 000079 1782 KQVRHFTGTGNTPMMYPLQPVIEEI-EKEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAY-RKGLGVVCNKEGGFGEDDF 1859 (2396)
Q Consensus 1782 kqvRhf~G~g~tP~~c~ckPViEC~-eC~Cge~C~NRllQ~Cq~ilk~i~r~PleVFrT~-~KGwGVFAteDegI~KGEF 1859 (2396)
.+...+... ...-.+++||. .|.|+..|.||++|.+.. .++.+|++. .+||||||+++ |++|+|
T Consensus 101 ----~Y~~~g~l~-~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~-------~~l~vfrt~~~kG~Gl~A~~~--I~~G~~ 166 (300)
T 2r3a_A 101 ----AYNKNQQIK-IPPGTPIYECNSRCQCGPDCPNRIVQKGTQ-------YSLCIFRTSNGRGWGVKTLVK--IKRMSF 166 (300)
T ss_dssp ----SBCTTSCBC-SCTTCCEECCCTTSSCCTTCTTCSGGGCCC-------SCEEEEECSSSCCEEEEESSC--BCTTCE
T ss_pred ----ccccCCcEe-ccCCCcEEeCCCCCCCCCcCCCcccccccc-------ccEEEEEeCCCceEEEEeCcc--ccCCCE
Confidence 000011000 01224678995 889999999999986533 478899986 69999999987 999999
Q ss_pred EEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCcccCCcccccCCCCCCCeEEEEE
Q 000079 1860 VVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVT 1939 (2396)
Q Consensus 1860 I~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDATrkGNiARFINHSCdPNCeaq~v 1939 (2396)
|+||+||||+..++.++...+. . ....|.+.+.... +.++|||+.+||+||||||||+|||.+..+
T Consensus 167 I~EY~Gevi~~~ea~~R~~~y~------~--~~~~Y~f~l~~~~------~~~~IDa~~~GN~aRfiNHSC~PN~~~~~v 232 (300)
T 2r3a_A 167 VMEYVGEVITSEEAERRGQFYD------N--KGITYLFDLDYES------DEFTVDAARYGNVSHFVNHSCDPNLQVFNV 232 (300)
T ss_dssp EEEECCEEEEHHHHHHHHHTCC------H--HHHHTEEECCSSC------SSEEEECSSEECGGGGCEECSSCSEEEEEE
T ss_pred eEEEeeEEecHHHHHHHHHHhh------h--ccccEEEEeecCC------ceEEEecccccChHHheecCCCCCEEEEEE
Confidence 9999999999876544332111 0 1123444443211 238999999999999999999999999988
Q ss_pred EECC----EEEEEEEEcCCCCCCCeEEEecCCCCCCc-----------ccccCeeEEeCCCCccccc
Q 000079 1940 AVDG----HYQIGIYTVRGIHYGEEITFDYNSVTESK-----------EEYEASVCLCGSQVCRGSY 1991 (2396)
Q Consensus 1940 ~VnG----e~RIgfFAlRDI~pGEELTFDYg~~~esk-----------eE~ek~~CLCGS~nCRGs~ 1991 (2396)
.+++ .++|+|||+|||++||||||||+...... .....+.|+|||++|||+|
T Consensus 233 ~~~~~d~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~d~~~~~~~~~~~C~CGs~~Crg~l 299 (300)
T 2r3a_A 233 FIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYL 299 (300)
T ss_dssp ESSCCCTTSCEEEEEESSCBCTTCEEEECGGGSSCC--------------CCCCBCCCCCTTCCSBC
T ss_pred EeccCCCCceEEEEEEccCCCCCCEEEEECCCCccccccccccccccccccCCCEeeCCCccccccC
Confidence 8763 58999999999999999999999874321 0113579999999999953
No 9
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*
Probab=99.97 E-value=2.2e-31 Score=290.26 Aligned_cols=140 Identities=30% Similarity=0.516 Sum_probs=111.9
Q ss_pred CCCcceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCce
Q 000079 1832 RPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDL 1911 (2396)
Q Consensus 1832 ~PleVFrT~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~ 1911 (2396)
.++++|.+..+||||||+++ |++|+||+||+|||++..+..++...+.. . ....|.+.+.. .
T Consensus 52 ~~l~V~~s~~~G~GlfA~~~--I~~G~~I~EY~Gevi~~~e~~~R~~~y~~---~----~~~~Y~f~l~~---------~ 113 (192)
T 2w5y_A 52 EAVGVYRSPIHGRGLFCKRN--IDAGEMVIEYAGNVIRSIQTDKREKYYDS---K----GIGCYMFRIDD---------S 113 (192)
T ss_dssp HHEEEEECSSSSEEEEESSC--BCTTCEEEECCSEEEEGGGHHHHHHHHHH---H----TCCCCEEECSS---------S
T ss_pred CcEEEEEcCCceeEEEECcc--cCCCCEEEEeeeeEechHHHHHHHHHHhh---c----CCceeeeeecC---------c
Confidence 35788999999999999987 99999999999999998765544332211 1 12245444432 2
Q ss_pred EEEcCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCCCcccccCeeEEeCCCCccccc
Q 000079 1912 VVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSY 1991 (2396)
Q Consensus 1912 lvIDATrkGNiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~eskeE~ek~~CLCGS~nCRGs~ 1991 (2396)
++|||+..||+||||||||+|||.++.+.++|.++|+|||+|||.+||||||||+...+.. ...+.|+|||++|||++
T Consensus 114 ~~IDa~~~Gn~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~~~~--~~~~~C~Cgs~~Crg~l 191 (192)
T 2w5y_A 114 EVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDA--SNKLPCNCGAKKCRKFL 191 (192)
T ss_dssp EEEECTTTCCGGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC---------CCBCCCCCTTCCSBC
T ss_pred eEEECccccChhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCchhcC--CCCceeECCCCCCcCcC
Confidence 7999999999999999999999999999999999999999999999999999999877542 24689999999999953
No 10
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=99.94 E-value=2.1e-27 Score=249.90 Aligned_cols=126 Identities=27% Similarity=0.428 Sum_probs=100.9
Q ss_pred cCCCcceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCc
Q 000079 1831 SRPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYD 1910 (2396)
Q Consensus 1831 r~PleVFrT~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd 1910 (2396)
..+++++.++.|||||||+++ |++|+||+||+|||++..+...+...+ ... .....|..++.... .
T Consensus 29 ~~~l~v~~~~~kG~Gl~A~~~--I~~G~~I~ey~Gevi~~~~~~~r~~~~---~~~---~~~~~y~~~~~~~~------~ 94 (166)
T 3f9x_A 29 EEGMKIDLIDGKGRGVIATKQ--FSRGDFVVEYHGDLIEITDAKKREALY---AQD---PSTGCYMYYFQYLS------K 94 (166)
T ss_dssp CTTEEEEEETTTEEEEEESSC--BCTTCEEEECCSEEEEHHHHHHHHHHH---TTC---TTSCCCEEEEEETT------E
T ss_pred ccCeEEEECCCceeEEEECCC--cCCCCEEEEeeceEcCHHHHHHHHHHH---hhc---cCCCceEEEEecCC------C
Confidence 347899999999999999987 999999999999999976655443222 111 12222332222111 2
Q ss_pred eEEEcCccc-CCcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCC
Q 000079 1911 LVVVDAMHK-ANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTE 1970 (2396)
Q Consensus 1911 ~lvIDATrk-GNiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~e 1970 (2396)
.++|||+.. ||+||||||||+|||.+..+.+++.++|+|||+|||.+||||||||+..+.
T Consensus 95 ~~~iDa~~~~Gn~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~ 155 (166)
T 3f9x_A 95 TYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGDRSK 155 (166)
T ss_dssp EEEEECCSCCSCSGGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCCCCCH
T ss_pred CeEEechhcCCChhheeecCCCCCeeEEEEEECCeeEEEEEECCcCCCCCEEEEEcCCChh
Confidence 389999996 999999999999999999999999999999999999999999999998764
No 11
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=99.88 E-value=6.1e-23 Score=232.94 Aligned_cols=142 Identities=15% Similarity=0.068 Sum_probs=100.3
Q ss_pred CCcccccCCcCccCCCchhhhcccccccccccCCCcceecC--CccceEEeCccCCcCCCCEEEEEecEEecchhhhhhh
Q 000079 1800 QPVIEEIEKEAVDDCDVRTMKMCRGILKAMDSRPDDKYVAY--RKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQ 1877 (2396)
Q Consensus 1800 kPViEC~eC~Cge~C~NRllQ~Cq~ilk~i~r~PleVFrT~--~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERq 1877 (2396)
.|+++|..+.+...|.++++.... ....+.+..+. .|||||||+++ |++|+||+||+||||+..+..++.
T Consensus 83 ~~~~~~d~~~~~~i~~~~~~~~~~------~~~~~~v~~S~i~~kG~GvfA~~~--I~~G~~I~eY~Gevi~~~e~~~R~ 154 (261)
T 2f69_A 83 NSVYHFDKSTSSCISTNALLPDPY------ESERVYVAESLISSAGEGLFSKVA--VGPNTVMSFYNGVRITHQEVDSRD 154 (261)
T ss_dssp CCEECCCCCCSSCSCSCTTSCCHH------HHTTEEEEECSSTTCCEEEEESSC--BCTTCEEEEECCEEECHHHHHTSC
T ss_pred CceEecCcccCcceeCccccCCcc------cCceEEEEecCCCCCceEEEECcc--cCCCCEEEEEeeEEeCHHHHHHHh
Confidence 456677655554556666554211 11234555555 45999999987 999999999999999976554322
Q ss_pred hhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCc--------ccCCcccccCCCCCCCeEEEEEEECC-EEEEE
Q 000079 1878 DGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAM--------HKANYASRICHSCRPNCEAKVTAVDG-HYQIG 1948 (2396)
Q Consensus 1878 d~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDAT--------rkGNiARFINHSCdPNCeaq~v~VnG-e~RIg 1948 (2396)
.. + ..|.+.+.. .++|||+ .+||+||||||||+|||.++.+...+ ...|+
T Consensus 155 ~~------~------~~~~f~l~~---------~~~IDa~~~~~~~~~~~Gn~aRfiNHSC~PN~~~~~~~~~~~~~~i~ 213 (261)
T 2f69_A 155 WA------L------NGNTLSLDE---------ETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKC 213 (261)
T ss_dssp GG------G------CSSCEECSS---------SCEEECCTTTTSTTTCCSCCGGGCEECSSCSEEEEEEEETTTEEEEE
T ss_pred hh------h------ccceeeecC---------CeEEEccccccccccccccceeeEeeCCCCCeEEEEEEcCCCCcEEE
Confidence 11 1 012233321 2699995 49999999999999999999874433 24459
Q ss_pred EEEcCCCCCCCeEEEecCCCCC
Q 000079 1949 IYTVRGIHYGEEITFDYNSVTE 1970 (2396)
Q Consensus 1949 fFAlRDI~pGEELTFDYg~~~e 1970 (2396)
|||+|||++||||||||++...
T Consensus 214 i~A~RdI~~GEELt~dYg~~~~ 235 (261)
T 2f69_A 214 IRTLRAVEADEELTVAYGYDHS 235 (261)
T ss_dssp EEESSCBCTTCEEEECCCCCSC
T ss_pred EEECcccCCCCEEEEEcCCccc
Confidence 9999999999999999998764
No 12
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}
Probab=99.88 E-value=6.1e-24 Score=242.49 Aligned_cols=129 Identities=26% Similarity=0.365 Sum_probs=99.3
Q ss_pred cceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEE
Q 000079 1835 DKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVV 1914 (2396)
Q Consensus 1835 eVFrT~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvI 1914 (2396)
..|.+..+||||||+++ |++|+||+||+|||+...+..+++ + ......+|+.++... ..
T Consensus 139 ~ry~~e~~G~GlfA~~~--I~kGe~I~EY~Geii~~~e~ee~~-----~---~~~~~~dF~i~~s~~-----------~~ 197 (273)
T 3s8p_A 139 NRYSSEQNGAKIVATKE--WKRNDKIELLVGCIAELSEIEENM-----L---LRHGENDFSVMYSTR-----------KN 197 (273)
T ss_dssp CCCTTCSSEEEEEESSC--BCTTCEEEEEEEEEEEECHHHHHH-----H---CCTTTSCTTEEEETT-----------TT
T ss_pred cceeecCCCceEEECCc--cCCCCEEEEEEEEEccccHHHHHH-----H---hhhcccccceecccc-----------cc
Confidence 45777889999999987 999999999999998764433221 1 112234555554332 13
Q ss_pred cCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCCCcccccCeeEEeCCCCcccc
Q 000079 1915 DAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGS 1990 (2396)
Q Consensus 1915 DATrkGNiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~eskeE~ek~~CLCGS~nCRGs 1990 (2396)
+|+..||.||||||||+|||.+.. .|..+|+|+|+|||++||||||||+...+.. ..+.|.||+.+|+|.
T Consensus 198 ~a~~~g~~arfiNHSC~PN~~~~~---~~~~~i~i~A~RdI~~GEELt~~Y~~~~~~~---~~f~C~C~~c~crG~ 267 (273)
T 3s8p_A 198 CAQLWLGPAAFINHDCRPNCKFVS---TGRDTACVKALRDIEPGEEISCYYGDGFFGE---NNEFCECYTCERRGT 267 (273)
T ss_dssp EEEEEESGGGGCEECSSCSEEEEE---EETTEEEEEESSCBCTTCBCEECCCTTTTSG---GGTTCCCHHHHHHTC
T ss_pred ccceecchHHhhCCCCCCCeEEEE---cCCCEEEEEECceeCCCCEEEEecCchhcCC---CCeEEECCCCcCCCC
Confidence 567889999999999999998642 3445899999999999999999999887654 257899999999994
No 13
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Probab=99.85 E-value=2.6e-22 Score=202.46 Aligned_cols=109 Identities=24% Similarity=0.254 Sum_probs=88.3
Q ss_pred CCCcceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCce
Q 000079 1832 RPDDKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDL 1911 (2396)
Q Consensus 1832 ~PleVFrT~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~ 1911 (2396)
.++.++.+..+||||||+++ |++|++|+||.|++++..++.. . ...|.+.+..
T Consensus 4 ~~~~v~~s~~~G~GvfA~~~--I~~G~~I~ey~g~vi~~~e~~~------~---------~~~y~f~~~~---------- 56 (119)
T 1n3j_A 4 DRVIVKKSPLGGYGVFARKS--FEKGELVEECLCIVRHNDDWGT------A---------LEDYLFSRKN---------- 56 (119)
T ss_dssp SSEEEECSCSSCCEEEECCC--BCSCEEECCCCCEEECSHHHHH------H---------SCSEEEEETT----------
T ss_pred CCEEEEECCCceeEEEECCc--CCCCCEEEEeeEEEECHHHHhh------c---------cCCeEEEeCC----------
Confidence 35678888999999999987 9999999999999999754422 0 1124332211
Q ss_pred EEEcCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCCCc
Q 000079 1912 VVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESK 1972 (2396)
Q Consensus 1912 lvIDATrkGNiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~esk 1972 (2396)
|++..||++|||||||+|||.+.. +.+..+|.|+|+|||++||||||||+..++..
T Consensus 57 ---d~~~~~~~~~~~NHsc~pN~~~~~--~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~ 112 (119)
T 1n3j_A 57 ---MSAMALGFGAIFNHSKDPNARHEL--TAGLKRMRIFTIKPIAIGEEITISYGDDYWLS 112 (119)
T ss_dssp ---EEEEESSSHHHHHSCSSCCCEEEE--CSSSSCEEEEECSCBCSSEEECCCCCCCCCCC
T ss_pred ---ccccccCceeeeccCCCCCeeEEE--ECCCeEEEEEEccccCCCCEEEEecCchhhcC
Confidence 778889999999999999999865 45677999999999999999999999887643
No 14
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.84 E-value=3.4e-21 Score=219.63 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=87.3
Q ss_pred CcceecC--CccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCce
Q 000079 1834 DDKYVAY--RKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDL 1911 (2396)
Q Consensus 1834 leVFrT~--~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~ 1911 (2396)
+.+..+. +|||||||+++ |++|+||+||+||+|+..+..++... + ..|.+.+.. .
T Consensus 165 ~~v~~S~i~GkG~Gvfa~~~--I~~G~~I~ey~Ge~i~~~~~~~r~~~------~------~~~~~~l~~---------~ 221 (293)
T 1h3i_A 165 VYVAESLISSAGEGLFSKVA--VGPNTVMSFYNGVRITHQEVDSRDWA------L------NGNTLSLDE---------E 221 (293)
T ss_dssp EEEEECSSSSSSEEEEESSC--BCTTCEEEEECCEEECHHHHHHSCGG------G------CTTEEECSS---------S
T ss_pred EEEeeeecCCCcceEEECCc--CCCCCEEEEeccEEcCHHHHhHHhhh------c------ccCEEecCC---------C
Confidence 4455544 46699999987 99999999999999997654433211 1 123333332 1
Q ss_pred EEEcC--------cccCCcccccCCCCCCCeEEEEEEECCEEE-EEEEEcCCCCCCCeEEEecCCCCC
Q 000079 1912 VVVDA--------MHKANYASRICHSCRPNCEAKVTAVDGHYQ-IGIYTVRGIHYGEEITFDYNSVTE 1970 (2396)
Q Consensus 1912 lvIDA--------TrkGNiARFINHSCdPNCeaq~v~VnGe~R-IgfFAlRDI~pGEELTFDYg~~~e 1970 (2396)
++||| +..||+||||||||+|||.++.+...+..+ |+|||+|||++||||||||++...
T Consensus 222 ~~iDa~~~~~~~~~~~gn~ar~iNHsc~pN~~~~~~~~~~~~~~~~~~a~r~I~~geElt~~Yg~~~~ 289 (293)
T 1h3i_A 222 TVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHS 289 (293)
T ss_dssp CEEECCTTTTSTTTCCSCCGGGSEEESSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEEEEETTBC
T ss_pred EEEeCcccccccceeeccceeeeccCCCCCeEEEEEEcCCCCcEEEEEECCccCCCCEEEEecCCCCC
Confidence 69999 779999999999999999999875544345 599999999999999999998764
No 15
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*
Probab=99.83 E-value=4.6e-21 Score=202.39 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=83.8
Q ss_pred Ccceec--CCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCce
Q 000079 1834 DDKYVA--YRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDL 1911 (2396)
Q Consensus 1834 leVFrT--~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~ 1911 (2396)
+.+..+ +.+||||||+++ |++|++|+||+||+++..+.. ...|.+.+....+ ..
T Consensus 31 l~l~~S~i~~~G~GVfA~~~--I~kG~~~gey~Ge~i~~~e~~-----------------~~~Y~f~i~~~~~-----~~ 86 (149)
T 2qpw_A 31 VRLFPSAVDKTRIGVWATKP--ILKGKKFGPFVGDKKKRSQVK-----------------NNVYMWEVYYPNL-----GW 86 (149)
T ss_dssp EEEEECSSCTTSEEEEESSC--BCTTCEECCCCCEEECGGGCC-----------------CSSSEEEEEETTT-----EE
T ss_pred eEEEEcCCCCCceEEEECCc--cCCCCEEEEEeCEEcCHHHhc-----------------cCceEEEEecCCC-----ee
Confidence 344444 467999999986 999999999999999853210 1234444432111 23
Q ss_pred EEEcCcc--cCCcccccCCCCCC---CeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCC
Q 000079 1912 VVVDAMH--KANYASRICHSCRP---NCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTE 1970 (2396)
Q Consensus 1912 lvIDATr--kGNiARFINHSCdP---NCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~e 1970 (2396)
++|||+. .||++|||||||+| ||.+.. +++ +|.|||+|||.+||||||||+..+.
T Consensus 87 ~~IDa~~~~~gn~~RfINhSc~p~eqNl~~~~--~~~--~I~~~A~RdI~~GEEL~~dY~~~~~ 146 (149)
T 2qpw_A 87 MCIDATDPEKGNWLRYVNWACSGEEQNLFPLE--INR--AIYYKTLKPIAPGEELLVWYNGEDN 146 (149)
T ss_dssp EEEECSSGGGSCGGGGCEECBTTBTCCEEEEE--ETT--EEEEEESSCBCTTCBCEECCCCCCC
T ss_pred EEEeCCCCCCCcceeeeeccCChhhcCEEEEE--ECC--EEEEEEccCCCCCCEEEEccCCccC
Confidence 6899997 99999999999999 998843 455 8999999999999999999998654
No 16
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}
Probab=99.80 E-value=1.4e-20 Score=212.50 Aligned_cols=125 Identities=22% Similarity=0.359 Sum_probs=91.8
Q ss_pred cceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEE
Q 000079 1835 DKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVV 1914 (2396)
Q Consensus 1835 eVFrT~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvI 1914 (2396)
..|....+|+||||+++ |++|+||+||+|+|+...+..++ . .......|..++... .+
T Consensus 111 ~Ry~~~~~G~Gv~A~~~--I~kGE~I~ey~Geli~~t~~e~~------~---~~~~~n~f~i~~~~~-----------~~ 168 (247)
T 3rq4_A 111 TRYSMETNGAKIVSTRA--WKKNEKLELLVGCIAELREADEG------L---LRAGENDFSIMYSTR-----------KR 168 (247)
T ss_dssp CCCTTCSSCEEEEESSC--BCTTCEEEEEEEEEEECCGGGGG------G---CCTTTSCTTEEEETT-----------TT
T ss_pred eeeeecCCcceEEeCCc--cCCCCEEEEEEeEEEeCcHHHHH------h---hhccCCcEEEEecCC-----------cc
Confidence 44666789999999987 99999999999999865332221 1 111233455544322 13
Q ss_pred cCcccCCcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCCCcccccCeeEEeCCCCccc
Q 000079 1915 DAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRG 1989 (2396)
Q Consensus 1915 DATrkGNiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~eskeE~ek~~CLCGS~nCRG 1989 (2396)
++...||+||||||||+|||.+..+ ++ .+|.|+|+|||.+||||||||+..++.. ..+.|.|++ |..
T Consensus 169 ~~~l~~~~ar~iNHSC~PN~~~~~~--~~-~~i~v~A~rdI~~GEElt~~Y~~~~~~~---~~f~C~C~~--C~~ 235 (247)
T 3rq4_A 169 SAQLWLGPAAFINHDCKPNCKFVPA--DG-NAACVKVLRDIEPGDEVTCFYGEGFFGE---KNEHCECHT--CER 235 (247)
T ss_dssp EEEEEESGGGGCEECSSCSEEEEEE--TT-TEEEEEESSCBCTTCBCEECCCTTSSSG---GGTTCCCHH--HHH
T ss_pred cceeecchhhhcCCCCCCCEEEEEe--CC-CEEEEEECCcCCCCCEEEEecCchhcCC---CCCEEECCC--CCC
Confidence 5677899999999999999976543 33 4899999999999999999999887643 346788876 643
No 17
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=157.39 Aligned_cols=107 Identities=15% Similarity=0.059 Sum_probs=73.7
Q ss_pred CCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCcc-
Q 000079 1840 YRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMH- 1918 (2396)
Q Consensus 1840 ~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDATr- 1918 (2396)
+++|+||||++. |++|++|++|+|++++..+... . ....|...+...+ |...++|||+.
T Consensus 37 ~~~G~GVfA~~~--IpkGt~fGpY~Ge~i~~~ea~~----------~----~~~~y~w~i~~~~----G~~~~~IDa~~e 96 (170)
T 3ep0_A 37 PGEGLGIFSKTW--IKAGTEMGPFTGRVIAPEHVDI----------C----KNNNLMWEVFNED----GTVRYFIDASQE 96 (170)
T ss_dssp SSCSEEEEESSC--BCTTCEEEEECCEEECC------------------------CEEEEECTT----SSEEEEEECC--
T ss_pred CCCceEEEECcc--cCCCCEEEecCceecCHHHhcc----------c----cCCceEEEEecCC----CcEEEEEECCCC
Confidence 457999999986 9999999999999998643211 0 1123333333221 22236999998
Q ss_pred -cCCcccccCCCCC---CCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCC
Q 000079 1919 -KANYASRICHSCR---PNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTE 1970 (2396)
Q Consensus 1919 -kGNiARFINHSCd---PNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~e 1970 (2396)
.||++|||||+|. +||.+.. +++ +|.|+|+|||.+||||+|+|+..+.
T Consensus 97 ~~~NWmR~Vn~A~~~~eqNl~a~q--~~~--~I~~~a~RdI~pGeELlvwYg~~y~ 148 (170)
T 3ep0_A 97 DHRSWMTYIKCARNEQEQNLEVVQ--IGT--SIFYKAIEMIPPDQELLVWYGNSHN 148 (170)
T ss_dssp ----GGGGCEECSSTTTCCEEEEE--ETT--EEEEEESSCBCTTCBCEEEECC---
T ss_pred CCcceeeeEEecCCcccCCeeeEE--ECC--EEEEEECcCcCCCCEEEEeeCHHHH
Confidence 8999999999995 8988754 465 8999999999999999999997664
No 18
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=152.79 Aligned_cols=108 Identities=16% Similarity=0.085 Sum_probs=73.5
Q ss_pred CCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCcc-
Q 000079 1840 YRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMH- 1918 (2396)
Q Consensus 1840 ~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDATr- 1918 (2396)
.+.|+||||++. |++|+++++|.|++++..+...+. + . ... |...++.. +....+|||+.
T Consensus 32 ~~~g~GVfa~~~--Ip~G~~fGPy~Ge~~~~~e~~~~~--------~-~--~~~-y~w~i~~~-----~~~~~~iD~~~~ 92 (151)
T 3db5_A 32 VGAEVGVWTGET--IPVRTCFGPLIGQQSHSMEVAEWT--------D-K--AVN-HIWKIYHN-----GVLEFCIITTDE 92 (151)
T ss_dssp ---CEEEEESSC--BCTTCEECCCCCEEEC----------------------CC-SEEEEEET-----TEEEEEEECCCT
T ss_pred CCCceEEEEecc--cCCCCEEEEeccEEeCHHHhhccc--------c-c--CCC-ceEEEEeC-----CCEEEEEECcCC
Confidence 357999999976 999999999999999864322110 0 1 111 32223221 11236899987
Q ss_pred -cCCcccccCCCCC---CCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCC
Q 000079 1919 -KANYASRICHSCR---PNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTE 1970 (2396)
Q Consensus 1919 -kGNiARFINHSCd---PNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~e 1970 (2396)
.||++|||||+|. +||.+.. +++ +|.++|+|||.+||||+|+|+..+.
T Consensus 93 ~~~NWmR~Vn~A~~~~eqNl~a~q--~~~--~I~~~a~rdI~pGeELlv~Yg~~y~ 144 (151)
T 3db5_A 93 NECNWMMFVRKARNREEQNLVAYP--HDG--KIFFCTSQDIPPENELLFYYSRDYA 144 (151)
T ss_dssp TTSCGGGGCEECSSTTTCCEEEEE--ETT--EEEEEESSCBCTTCBCEEEECC---
T ss_pred CCCcceeEEEecCCcccCceEEEE--ECC--EEEEEEccccCCCCEEEEecCHHHH
Confidence 5999999999995 5998854 465 7899999999999999999997664
No 19
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Probab=99.49 E-value=1.1e-14 Score=160.40 Aligned_cols=119 Identities=16% Similarity=0.092 Sum_probs=87.5
Q ss_pred CCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEEcCcc-
Q 000079 1840 YRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAMH- 1918 (2396)
Q Consensus 1840 ~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvIDATr- 1918 (2396)
+.+|+||||++. |++|+++++|.|++++..+.. .+ ....|...+... +....+|||+.
T Consensus 68 ~~~G~GVfa~~~--IpkGt~fGPY~Ge~~~~~e~~-------------~~-~~~~y~w~i~~~-----g~~~~~IDas~e 126 (196)
T 3dal_A 68 SEEVIGVMSKEY--IPKGTRFGPLIGEIYTNDTVP-------------KN-ANRKYFWRIYSR-----GELHHFIDGFNE 126 (196)
T ss_dssp SCCEEEEEESSC--BCTTEEECCCCCEEECTTTCC-----------------CCTTEEEEEET-----TEEEEEEECCCT
T ss_pred CCceeEEEEccc--cCCCCEEEeccceEcCHHHhh-------------hc-cCCcceeeeccC-----CCEEEEEECCCC
Confidence 458999999976 999999999999999863311 01 112233333211 11237999976
Q ss_pred -cCCcccccCCCCC---CCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCCCcccccCeeEEeCCCCcccccc
Q 000079 1919 -KANYASRICHSCR---PNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYL 1992 (2396)
Q Consensus 1919 -kGNiARFINHSCd---PNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~eskeE~ek~~CLCGS~nCRGs~L 1992 (2396)
.||++|||||+|. +||.+.. +++ +|.|+|+|||.|||||+|+|+..+ .+.||.+.|+..++
T Consensus 127 ~~gNWmRfVn~A~~~~eqNl~a~q--~~~--~I~y~a~RdI~pGeELlvwYg~~Y---------~~~lg~p~~~~~~~ 191 (196)
T 3dal_A 127 EKSNWMRYVNPAHSPREQNLAACQ--NGM--NIYFYTIKPIPANQELLVWYCRDF---------AERLHYPYPGELTM 191 (196)
T ss_dssp TSSCGGGGCEECSSTTTCCEEEEE--ETT--EEEEEESSCBCTTCBCEEEECHHH---------HHHTTCCCTTCCCH
T ss_pred CCCceEEeEEecCCcccCCcEEEE--ECC--EEEEEECcccCCCCEEEEecCHHH---------HHHcCCCCCHHHHH
Confidence 8999999999995 7998754 455 789999999999999999999643 36677777777553
No 20
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}
Probab=99.29 E-value=1.5e-12 Score=146.74 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=82.4
Q ss_pred cceecCCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcceEEeecCCCCCCCCCceEEE
Q 000079 1835 DKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVV 1914 (2396)
Q Consensus 1835 eVFrT~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY~myL~r~~gD~dGyd~lvI 1914 (2396)
.+..+...|.||||.. +.|++|+.+++|.|++++..+. ...|...+....+ ...+|
T Consensus 75 ~vr~S~i~~~Gv~~~~-~~IpkGt~fGPY~Ge~~s~~ea------------------~~~y~wei~~~~g-----~~~~I 130 (237)
T 3ray_A 75 EVVKDTSGESDVRCVN-EVIPKGHIFGPYEGQISTQDKS------------------AGFFSWLIVDKNN-----RYKSI 130 (237)
T ss_dssp EEEECTTSCEEEEECS-SCBCTTEEECCCCSEEECC-----------------------CCEEEEECTTS-----CEEEE
T ss_pred EEEEcCCCCcceEEEe-CcCCCCCEEEecccEEcChHHc------------------cccceEEEEcCCC-----cEEEE
Confidence 3445566789999885 3699999999999999974210 0123333332211 13699
Q ss_pred cCcc--cCCcccccCCCCC---CCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCCCcccccCeeEEeCCCCccc
Q 000079 1915 DAMH--KANYASRICHSCR---PNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRG 1989 (2396)
Q Consensus 1915 DATr--kGNiARFINHSCd---PNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~eskeE~ek~~CLCGS~nCRG 1989 (2396)
||.. .||++|||||+|. +||.+.. +++ +|.|+|+|+|.+||||+|+|+..+. ...-+.|++..|+.
T Consensus 131 Dgsde~~gNWmRfVn~Ar~~~EqNL~A~q--~~~--~Iyy~a~RdI~pGeELlVwYg~~Y~-----~~l~~~~~~~~~~~ 201 (237)
T 3ray_A 131 DGSDETKANWMRYVVISREEREQNLLAFQ--HSE--RIYFRACRDIRPGEWLRVWYSEDYM-----KRLHSMSQETIHRN 201 (237)
T ss_dssp ECCCTTTSCGGGGCEECCCTTTCCEEEEE--ETT--EEEEEESSCBCTTCBCEEEECHHHH-----HHHCC---------
T ss_pred ecCCCCCCcceeEEEcCCCcccccceeEE--eCC--EEEEEEccccCCCCEEEEeeCHHHH-----HHhcccccchhccc
Confidence 9997 7999999999995 7988754 466 7899999999999999999997653 23568899999987
No 21
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=131.54 Aligned_cols=107 Identities=11% Similarity=0.048 Sum_probs=74.4
Q ss_pred CCccceEEeCccCCcCCCCEEEEEecEEecchhhhhhhhhhHhhhcCCCCCCCcce--EEeecCCC-CCCCCCceEEEcC
Q 000079 1840 YRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFY--NIYLERPK-GDADGYDLVVVDA 1916 (2396)
Q Consensus 1840 ~~KGwGVFAteDegI~KGEFI~EYVGEVIt~eE~~ERqd~IRrlq~d~kd~~~dFY--~myL~r~~-gD~dGyd~lvIDA 1916 (2396)
...|+||||++. |++|+.+++|.|++++..+..+ .+| .+++.... .+..+-...+||+
T Consensus 28 ~~~g~GVfA~~~--IpkGt~fGPy~Ge~~~~~e~~~-----------------~~~~~~v~~~d~~~~~~~~~~~~~iD~ 88 (152)
T 3ihx_A 28 DRFLGGVFSKRR--IPKRTQFGPVEGPLVRGSELKD-----------------CYIHLKVSLDKGDRKERDLHEDLWFEL 88 (152)
T ss_dssp CTTTCSEEESSC--BCSSCEECCCCSCEECSTTCCS-----------------SSCCCBC---------------CEECC
T ss_pred eecCCeEEECce--ecCCCEEEeeccEEcCHHHhcc-----------------CcceEEEEccccccccccCCccEEEEc
Confidence 345899999976 9999999999999998632110 111 11111100 0000112369999
Q ss_pred cc--cCCcccccCCCCC---CCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCC
Q 000079 1917 MH--KANYASRICHSCR---PNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVT 1969 (2396)
Q Consensus 1917 Tr--kGNiARFINHSCd---PNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~ 1969 (2396)
+. .||++|||||+|. +||.+.. .++ +|.+.|+|+|.+||||+++|+..+
T Consensus 89 ~~~~~~NWmr~vn~a~~~~eqNl~a~q--~~~--~I~~~~~r~I~pGeELlv~Y~~~y 142 (152)
T 3ihx_A 89 SDETLCNWMMFVRPAQNHLEQNLVAYQ--YGH--HVYYTTIKNVEPKQELKVWYAASY 142 (152)
T ss_dssp CCTTTSCGGGGCCBCCSTTTCCEEEEE--CSS--SEEEEESSCBCTTCBCCEEECHHH
T ss_pred cCCCCCcceeeeeccCCccCCCcEEEE--eCC--eEEEEEeeecCCCCEEEEechHHH
Confidence 86 6999999999996 7988754 455 688999999999999999999654
No 22
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.38 E-value=1.8e-07 Score=112.34 Aligned_cols=65 Identities=29% Similarity=0.462 Sum_probs=47.4
Q ss_pred CcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCCCcccc-----cCeeEEeCCCCccc
Q 000079 1921 NYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEY-----EASVCLCGSQVCRG 1989 (2396)
Q Consensus 1921 NiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~eskeE~-----ek~~CLCGS~nCRG 1989 (2396)
..++||||||.|||.+.. .++ ++.|+|+|||++|||||++|........+. ....|.|++..|..
T Consensus 200 ~~~s~~NHsC~PN~~~~~--~~~--~~~~~a~r~I~~GeEl~isY~~~~~~~~~R~~~L~~~~~F~C~C~~C~~ 269 (429)
T 3qwp_A 200 PSISLLNHSCDPNCSIVF--NGP--HLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQT 269 (429)
T ss_dssp TTGGGCEECSSCSEEEEE--ETT--EEEEEECSCBCTTCEEEECCSCSSCCHHHHHHHHHHHHCCCCCSHHHHH
T ss_pred hhhHhhCcCCCCCeEEEE--eCC--EEEEEEeeeECCCCEEEEEecCCCCCHHHHHHHHhccCCeEeeCCCCCC
Confidence 457899999999998753 343 688999999999999999998765432111 12345566677876
No 23
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.38 E-value=8.4e-08 Score=117.33 Aligned_cols=66 Identities=26% Similarity=0.473 Sum_probs=46.0
Q ss_pred cccccCCCCCCCeEEEEEEECCE-----------EEEEEEEcCCCCCCCeEEEecCCCCCCcccc-----cCeeEEeCCC
Q 000079 1922 YASRICHSCRPNCEAKVTAVDGH-----------YQIGIYTVRGIHYGEEITFDYNSVTESKEEY-----EASVCLCGSQ 1985 (2396)
Q Consensus 1922 iARFINHSCdPNCeaq~v~VnGe-----------~RIgfFAlRDI~pGEELTFDYg~~~eskeE~-----ek~~CLCGS~ 1985 (2396)
.+.||||||.|||.+.. .++. .+|.|+|+|||++||||||+|.......... ....+.|.+.
T Consensus 200 ~~s~~NHSC~PN~~~~~--~~~~~~~~~~~~~~~~~~~v~A~rdI~~GEEltisY~~~~~~~~~R~~~L~~~~~F~C~C~ 277 (490)
T 3n71_A 200 NLGLVNHDCWPNCTVIF--NNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCE 277 (490)
T ss_dssp TGGGCEECSSCSEEEEE--ECCCCSSSCCCGGGSCEEEEEESSCBCTTCBCEECSSCSCSCHHHHHHHHHHHHSSCCCCH
T ss_pred hhhhcccCCCCCeeEEe--cCCccccccccccccceEEEEECCCCCCCCEEEEeecCCCCCHHHHHHHHHCCCCeEeeCC
Confidence 46789999999998644 2331 3899999999999999999998655432110 0123444556
Q ss_pred Cccc
Q 000079 1986 VCRG 1989 (2396)
Q Consensus 1986 nCRG 1989 (2396)
.|..
T Consensus 278 ~C~~ 281 (490)
T 3n71_A 278 HCQK 281 (490)
T ss_dssp HHHH
T ss_pred CCCC
Confidence 6876
No 24
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.24 E-value=5.1e-07 Score=109.05 Aligned_cols=62 Identities=24% Similarity=0.381 Sum_probs=45.0
Q ss_pred cccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCCCCCccc-------ccCeeEEeCCCCccc
Q 000079 1922 YASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEE-------YEASVCLCGSQVCRG 1989 (2396)
Q Consensus 1922 iARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~~eskeE-------~ek~~CLCGS~nCRG 1989 (2396)
.+.||||||.|||.+. +.++ ++.|+|+|||++|||||++|........+ .-.|.|.| ..|..
T Consensus 201 ~~s~~NHsC~PN~~~~--~~~~--~~~~~a~r~I~~Geel~i~Y~~~~~~~~~R~~~L~~~~~F~C~C--~~C~~ 269 (433)
T 3qww_A 201 DVALMNHSCCPNVIVT--YKGT--LAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCEC--RECTT 269 (433)
T ss_dssp TGGGSEECSSCSEEEE--EETT--EEEEEESSCBCTTCEEEECCSCTTSCHHHHHHHHHHHHSCCCCS--HHHHH
T ss_pred cccccCCCCCCCceEE--EcCC--EEEEEeccCcCCCCEEEEeecCCcCCHHHHHHHHhCcCCEEeEC--CCCCC
Confidence 4679999999999763 3344 57899999999999999999976543211 12466666 44765
No 25
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.53 E-value=0.00016 Score=81.08 Aligned_cols=106 Identities=19% Similarity=0.323 Sum_probs=82.9
Q ss_pred ccCccccCcchHHHHHHHHhhhchhHHHHhhhhchhHHHHHHhhcccceeeecCCCCCCchhHHHHHHHh----------
Q 000079 1202 ESGGWGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVRFYKGISRQVDLSSVGPNCTDSLIRKTLN---------- 1271 (2396)
Q Consensus 1202 ~~~~w~~l~g~~larvfh~lr~d~ksl~~~~~tc~~w~~~~~~~~~~~~~vdls~~g~~ctd~~~~~~~~---------- 1271 (2396)
+...|.-|+..+|..||.|| +.+.++.++.+|++|+.++.- ...-+.+||+...-. +..+..++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L--~~~d~~~~~~vc~~W~~~~~~-~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~ 79 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCL--CLPELLKVSGVCKRWYRLASD-ESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPR 79 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTS--CHHHHHHTTSSCHHHHHHHTC-STTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTT
T ss_pred ccCChhhCCHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhcC-chhheeeccccccCC--HHHHHhhhhccceEEEcCC
Confidence 45789999999999999999 667899999999999999843 345678999865433 556655521
Q ss_pred ---------hccccccceEEecccccCChhHHHHHHHhCCCccEEeecccc
Q 000079 1272 ---------AFDKEKLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCG 1313 (2396)
Q Consensus 1272 ---------~y~~~~~~~~~l~~c~n~~~~~l~~~l~~~p~~~~~~i~gc~ 1313 (2396)
.+.-.+++.+-|.+|. ++...+..++..+|.|.+++|++|.
T Consensus 80 n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~ 129 (336)
T 2ast_B 80 SFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR 129 (336)
T ss_dssp CEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB
T ss_pred ccccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc
Confidence 1223678888888886 8888888999999999999999994
No 26
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.32 E-value=0.00048 Score=82.85 Aligned_cols=124 Identities=23% Similarity=0.346 Sum_probs=76.5
Q ss_pred ccCccccCcchHHHHHHHHhhhchhHHHHhhhhchhHHHHHHhhc--------------------ccceeeecCCCCCCc
Q 000079 1202 ESGGWGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVRFYK--------------------GISRQVDLSSVGPNC 1261 (2396)
Q Consensus 1202 ~~~~w~~l~g~~larvfh~lr~d~ksl~~~~~tc~~w~~~~~~~~--------------------~~~~~vdls~~g~~c 1261 (2396)
+...|.-|+..+|.+||.||- +.+.++.++++|++|+.+...-+ ...+.++|+.- +..
T Consensus 2 ~~d~~~~LPdevL~~If~~L~-~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~ 79 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQ-LDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGK-PHF 79 (594)
T ss_dssp --------CHHHHHHHHHTCC-CHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECS-CGG
T ss_pred cccchhhCCHHHHHHHHhhcC-CchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCC-Cch
Confidence 345789999999999999995 36889999999999998832211 01133444431 111
Q ss_pred h-------------hHHHHHHHhhccccccceEEecccccCChhHHHHHHHhCCCccEEeecccccccc-----ccccCC
Q 000079 1262 T-------------DSLIRKTLNAFDKEKLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFGE-----LALKFP 1323 (2396)
Q Consensus 1262 t-------------d~~~~~~~~~y~~~~~~~~~l~~c~n~~~~~l~~~l~~~p~~~~~~i~gc~q~~~-----l~~~f~ 1323 (2396)
+ +..+..+...+ .+++.+-|.+|. ++...+..+...+|.|.+++|.+|..+++ +....|
T Consensus 80 ~~~~l~~~~~~~~~~~~l~~l~~~~--~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~ 156 (594)
T 2p1m_B 80 ADFNLVPDGWGGYVYPWIEAMSSSY--TWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR 156 (594)
T ss_dssp GGGTCSCTTSCCBCHHHHHHHHHHC--TTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCT
T ss_pred hhcccccccccchhhHHHHHHHHhC--CCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCC
Confidence 1 22333443322 478888888885 88888888877888888888888877665 223456
Q ss_pred ccccccc
Q 000079 1324 NINWVKS 1330 (2396)
Q Consensus 1324 ~v~w~~~ 1330 (2396)
++..+.=
T Consensus 157 ~L~~L~L 163 (594)
T 2p1m_B 157 NLKELDL 163 (594)
T ss_dssp TCCEEEC
T ss_pred CCCEEeC
Confidence 6665543
No 27
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.45 E-value=0.0045 Score=74.70 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=30.9
Q ss_pred cCcchHHHHHHHHhhhchhHHHHhhhhchhHHHHHHh
Q 000079 1208 LLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVRF 1244 (2396)
Q Consensus 1208 ~l~g~~larvfh~lr~d~ksl~~~~~tc~~w~~~~~~ 1244 (2396)
-|+-.+|.+||.||. +.+.++.+++.||+|+.+...
T Consensus 15 ~LPdeil~~I~~~L~-~~~d~~~~s~vck~W~~~~~~ 50 (592)
T 3ogk_B 15 ATVDDVIEQVMTYIT-DPKDRDSASLVCRRWFKIDSE 50 (592)
T ss_dssp CCGGGTHHHHHTTCC-CHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcC-CHHHHHHHHHHhHHHHHhhhc
Confidence 488999999999993 578899999999999987543
No 28
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=96.00 E-value=0.0038 Score=54.96 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=34.2
Q ss_pred ccCccccCcchHHHHHHHHhhhchhHHHHhhhhchhHHHHHH
Q 000079 1202 ESGGWGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR 1243 (2396)
Q Consensus 1202 ~~~~w~~l~g~~larvfh~lr~d~ksl~~~~~tc~~w~~~~~ 1243 (2396)
....|..|+..+|.+||.|| |++.|+-++.+||.|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L--~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCL--CLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTS--CGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhC
Confidence 35679999999999999999 68999999999999999885
No 29
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Probab=95.49 E-value=0.0083 Score=73.26 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=35.4
Q ss_pred CcccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCC
Q 000079 1921 NYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNS 1967 (2396)
Q Consensus 1921 NiARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~ 1967 (2396)
-++=++||+|+|||.+.. ++. .+.++|.|+|.+||||+++||.
T Consensus 221 P~~D~~NH~~~~~~~~~~---~~~-~~~~~a~~~i~~Geei~~~YG~ 263 (449)
T 3qxy_A 221 PAADILNHLANHNANLEY---SAN-CLRMVATQPIPKGHEIFNTYGQ 263 (449)
T ss_dssp TTGGGCEECSSCSEEEEE---CSS-EEEEEESSCBCTTCEEEECCSS
T ss_pred ecHHHhcCCCCCCeEEEE---eCC-eEEEEECCCcCCCchhhccCCC
Confidence 346789999999987532 332 6788999999999999999996
No 30
>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1
Probab=95.48 E-value=0.0046 Score=60.28 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=41.6
Q ss_pred cceEEecCCCCccCCCcHHHHHHHHhhcccccccccccccCceeeecc
Q 000079 995 GEWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFDKVWVPLT 1042 (2396)
Q Consensus 995 g~w~yldg~g~e~gp~s~selq~~v~~g~i~~~ssvfrk~d~~wvp~~ 1042 (2396)
--|||+|..|..||||+..+|+.-.+.|.+...--|.|....-|-||+
T Consensus 18 ~~W~Y~Dp~g~iQGPFs~~~M~~W~~~GyF~~~L~Vrr~~~~~~~~i~ 65 (78)
T 1wh2_A 18 LNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESAVL 65 (78)
T ss_dssp CCEEEECTTSCEEEEECHHHHHHHHTTTSSCSCCEEEETTSCTTSCEE
T ss_pred CeEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEeCCCCcceeh
Confidence 469999999999999999999999999999988888887755555554
No 31
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Probab=94.84 E-value=0.0092 Score=72.09 Aligned_cols=47 Identities=23% Similarity=0.356 Sum_probs=34.7
Q ss_pred cccccCCCCCCCeEEEEEEECC-------EEEEEEEEcCCCCCCCeEEEecCCC
Q 000079 1922 YASRICHSCRPNCEAKVTAVDG-------HYQIGIYTVRGIHYGEEITFDYNSV 1968 (2396)
Q Consensus 1922 iARFINHSCdPNCeaq~v~VnG-------e~RIgfFAlRDI~pGEELTFDYg~~ 1968 (2396)
++=++||+|.||.....+.+++ ...+.+.|.|+|++||||+++||..
T Consensus 189 ~~D~~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~i~~Geei~~sYG~~ 242 (440)
T 2h21_A 189 MADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLN 242 (440)
T ss_dssp STTSCEECTTCCCCCCEEEC----------CEEEEEESSCBCTTSBCEECSCTT
T ss_pred chHhhcCCCCcccccceeeecCcccccCCCceEEEEECCCCCCCCEEEEeCCCC
Confidence 4558999999985333333332 3578899999999999999999964
No 32
>3k3v_A Protein SMY2; GYF domain, poly-proline binding, domain SWAP, ragnya, phosphoprotein, protein binding; 1.80A {Saccharomyces cerevisiae} PDB: 3fma_A
Probab=94.14 E-value=0.019 Score=58.50 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=45.7
Q ss_pred cceEEecCCCCccCCCcHHHHHHHHhhcccccccccccc--------cCceeeecccccc
Q 000079 995 GEWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRK--------FDKVWVPLTFATE 1046 (2396)
Q Consensus 995 g~w~yldg~g~e~gp~s~selq~~v~~g~i~~~ssvfrk--------~d~~wvp~~~~~~ 1046 (2396)
-.|||+|-.|..||||+-.+++.-.+.|.....--|-|. +|..|+||...+.
T Consensus 16 ~~W~Y~Dp~G~vQGPFs~~~M~~W~~~GYF~~~L~VrR~~~~~~p~g~d~~F~~Lgel~~ 75 (100)
T 3k3v_A 16 SSWRYIDTQGQIHGPFTTQMMSQWYIGGYFASTLQISRLGSTPETLGINDIFITLGELMT 75 (100)
T ss_dssp CEEEEECTTSCEEEEEEHHHHHHHHHTTCCCTTCEEEECCSSCCSSSCBTCCEEHHHHHH
T ss_pred ceEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEcCCCCCccCCCCceeeHHHHHH
Confidence 469999999999999999999999999999998877775 5668888876655
No 33
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}
Probab=92.19 E-value=0.065 Score=66.53 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=32.8
Q ss_pred cccccCCCCCCCeEEEEEEECCEEEEEEEEcCCCCCCCeEEEecCCC
Q 000079 1922 YASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSV 1968 (2396)
Q Consensus 1922 iARFINHSCdPNCeaq~v~VnGe~RIgfFAlRDI~pGEELTFDYg~~ 1968 (2396)
++=++||+|.||.. .+..++ -.+.++|.++|.+||||+++||..
T Consensus 272 ~~Dm~NH~~~~~~~--~~~~~~-~~~~~~a~~~i~~Geei~isYG~~ 315 (497)
T 3smt_A 272 LWDMCNHTNGLITT--GYNLED-DRCECVALQDFRAGEQIYIFYGTR 315 (497)
T ss_dssp TGGGCEECSCSEEE--EEETTT-TEEEEEESSCBCTTCEEEECCCSC
T ss_pred hHHhhcCCCcccce--eeeccC-CeEEEEeCCccCCCCEEEEeCCCC
Confidence 45689999999632 222222 256789999999999999999963
No 34
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=88.63 E-value=0.61 Score=48.03 Aligned_cols=65 Identities=23% Similarity=0.416 Sum_probs=53.3
Q ss_pred chhhHHHHHHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhHHHHHHHHH
Q 000079 1426 ENGYKRMEEFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDA 1487 (2396)
Q Consensus 1426 e~~y~~~~~~~~~~l~~im~~~~~~~f~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a 1487 (2396)
|.+-.-+.+.|..-|+.||+.....+|.--| ..|+.|+++|+|.+ +..+..|+..|+.+|
T Consensus 3 e~~~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s--~~ef~~Dv~Li~~Na 80 (117)
T 2i7k_A 3 EVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQS--IEELKDNFKLMCTNA 80 (117)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCS--HHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHH
Confidence 4556677889999999999987777775322 38999999999975 778999999999999
Q ss_pred HHhcc
Q 000079 1488 IKAKN 1492 (2396)
Q Consensus 1488 ~~~~~ 1492 (2396)
+.+-.
T Consensus 81 ~~yN~ 85 (117)
T 2i7k_A 81 MIYNK 85 (117)
T ss_dssp HHTSC
T ss_pred HHHCC
Confidence 98754
No 35
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=86.19 E-value=1.6 Score=45.37 Aligned_cols=68 Identities=16% Similarity=0.359 Sum_probs=56.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhHHHHHHHH
Q 000079 1425 SENGYKRMEEFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRD 1486 (2396)
Q Consensus 1425 ~e~~y~~~~~~~~~~l~~im~~~~~~~f~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~~~r~ 1486 (2396)
.|.-.+.+-.+|..-|..+|+......|.--| ..|+.||++|+|. .+..+..|+..|+.+
T Consensus 4 ee~~l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~--~~~~f~~D~~li~~N 81 (130)
T 3dai_A 4 EEDTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYL--TVKDYLRDIDLICSN 81 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCS--SHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCC--CHHHHHHHHHHHHHH
Confidence 46677889999999999999988888775322 4899999999995 467899999999999
Q ss_pred HHHhccCC
Q 000079 1487 AIKAKNRG 1494 (2396)
Q Consensus 1487 a~~~~~~~ 1494 (2396)
|..+-..+
T Consensus 82 a~~yN~~~ 89 (130)
T 3dai_A 82 ALEYNPDR 89 (130)
T ss_dssp HHHHCCSS
T ss_pred HHHHCCCC
Confidence 99985543
No 36
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=86.01 E-value=1.3 Score=44.83 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1431 RMEEFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1431 ~~~~~~~~~l~~im~~~~~~~f~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
.+...+..-|..||+......|.--| ..|+.|+++|+|.+ +..+..|+..|+.+|+.+-.
T Consensus 7 ~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s--~~~f~~Dv~li~~Na~~yN~ 84 (112)
T 3d7c_A 7 QLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVT--RKLFVADLQRVIANCREYNP 84 (112)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCS--HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcC--HHHHHHHHHHHHHHHHHHCC
Confidence 45566777788888877777665432 37999999999976 57899999999999998754
Q ss_pred C
Q 000079 1493 R 1493 (2396)
Q Consensus 1493 ~ 1493 (2396)
.
T Consensus 85 ~ 85 (112)
T 3d7c_A 85 P 85 (112)
T ss_dssp T
T ss_pred C
Confidence 3
No 37
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=85.36 E-value=0.41 Score=52.53 Aligned_cols=64 Identities=19% Similarity=0.289 Sum_probs=38.8
Q ss_pred ceeeecCCCCCCchhHHHHHHHhhccccccceEEecccccCChhHHHHHHHh---CCCccEEeecccccccc
Q 000079 1249 SRQVDLSSVGPNCTDSLIRKTLNAFDKEKLNSILLVGCTNITSGMLEEILQS---FPHLSSIDIRGCGQFGE 1317 (2396)
Q Consensus 1249 ~~~vdls~~g~~ctd~~~~~~~~~y~~~~~~~~~l~~c~n~~~~~l~~~l~~---~p~~~~~~i~gc~q~~~ 1317 (2396)
-..+|||.-. =||.-+..|. +-.+++.+.|.+|.+||...|..|-.. .|.|.+++|+||.+..|
T Consensus 63 L~~LDLs~~~--Itd~GL~~L~---~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 63 IQAIDATDSC--IMSIGFDHME---GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp EEEEEEESCC--CCGGGGGGGT---TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred EeEEeCcCCC--ccHHHHHHhc---CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 3566666432 4555444442 345677777777777777777666652 45677777777766555
No 38
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=85.18 E-value=0.63 Score=51.08 Aligned_cols=68 Identities=12% Similarity=0.184 Sum_probs=52.8
Q ss_pred ceeeecCCCCCCchhHHHHHHHhhc-cccccceEEecccccCChhHHHHHHHhCCCccEEeeccccccccc
Q 000079 1249 SRQVDLSSVGPNCTDSLIRKTLNAF-DKEKLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFGEL 1318 (2396)
Q Consensus 1249 ~~~vdls~~g~~ctd~~~~~~~~~y-~~~~~~~~~l~~c~n~~~~~l~~~l~~~p~~~~~~i~gc~q~~~l 1318 (2396)
-+.++|+.- .+=||.-|..|-..- ....+..+-|.+|++||..-|..+ ..+|.|.+++|++|.+..+.
T Consensus 87 L~~L~L~~C-~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 87 VEKIRLCKC-HYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp CCEEEEESC-TTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCCH
T ss_pred CCEEEeCCC-CccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCch
Confidence 456777632 233788888887542 234799999999999999999865 67999999999999998763
No 39
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.62 E-value=1.3 Score=45.85 Aligned_cols=62 Identities=13% Similarity=0.258 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhHHHHHHHHHHHh
Q 000079 1429 YKRMEEFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKA 1490 (2396)
Q Consensus 1429 y~~~~~~~~~~l~~im~~~~~~~f~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~ 1490 (2396)
-.-+...|..-|..||+......|.--| ..|+.||++|+|.+ +..+..|+..|+.+|+.+
T Consensus 5 ~~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s--~~ef~~D~~li~~Na~~y 82 (121)
T 2d9e_A 5 SSGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLN--FDDFEEDFNLIVSNCLKY 82 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCS--HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHH
Confidence 3456678888899999988777775422 37999999999975 788999999999999987
Q ss_pred cc
Q 000079 1491 KN 1492 (2396)
Q Consensus 1491 ~~ 1492 (2396)
-.
T Consensus 83 N~ 84 (121)
T 2d9e_A 83 NA 84 (121)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 40
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=84.04 E-value=1.5 Score=45.68 Aligned_cols=62 Identities=18% Similarity=0.301 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhHHHHHHHHHHHh
Q 000079 1429 YKRMEEFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKA 1490 (2396)
Q Consensus 1429 y~~~~~~~~~~l~~im~~~~~~~f~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~ 1490 (2396)
-+.+..+|..-|..||+.....+|.--| ..|+.||++|+|. .+..+..|+..|+.+|+.+
T Consensus 11 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~--~~~~f~~D~~li~~Na~~y 88 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYK--NLHEFEEDFDLIIDNCMKY 88 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCS--SHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999988888885422 3799999999996 4678999999999999987
Q ss_pred cc
Q 000079 1491 KN 1492 (2396)
Q Consensus 1491 ~~ 1492 (2396)
-.
T Consensus 89 N~ 90 (135)
T 3rcw_A 89 NA 90 (135)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 41
>3k3v_A Protein SMY2; GYF domain, poly-proline binding, domain SWAP, ragnya, phosphoprotein, protein binding; 1.80A {Saccharomyces cerevisiae} PDB: 3fma_A
Probab=83.44 E-value=0.45 Score=48.63 Aligned_cols=49 Identities=24% Similarity=0.317 Sum_probs=43.7
Q ss_pred cCcEEEeccCCcccCchhhhhhhhhhhcCcccccchhhccCC--------CCceeee
Q 000079 640 VGKWFYLDHCGMECGPSRLCDLKTLVEEGVLVSDHFIKHLDS--------NRWETVE 688 (2396)
Q Consensus 640 ~GkWfyld~~G~e~gp~~l~~lk~l~~~g~l~~dh~ikh~d~--------~~w~t~e 688 (2396)
.-.|+|+|..|..|||=--.++..-.+.||+-.|-.|+..+. ++|+|+.
T Consensus 15 e~~W~Y~Dp~G~vQGPFs~~~M~~W~~~GYF~~~L~VrR~~~~~~p~g~d~~F~~Lg 71 (100)
T 3k3v_A 15 ESSWRYIDTQGQIHGPFTTQMMSQWYIGGYFASTLQISRLGSTPETLGINDIFITLG 71 (100)
T ss_dssp CCEEEEECTTSCEEEEEEHHHHHHHHHTTCCCTTCEEEECCSSCCSSSCBTCCEEHH
T ss_pred cceEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEcCCCCCccCCCCceeeHH
Confidence 358999999999999999999999999999999999998743 4888854
No 42
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=83.23 E-value=0.53 Score=54.39 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=33.6
Q ss_pred ccccCcchHHHHHHHHhhhchhHHHHhhhhchhHHHHHH
Q 000079 1205 GWGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR 1243 (2396)
Q Consensus 1205 ~w~~l~g~~larvfh~lr~d~ksl~~~~~tc~~w~~~~~ 1243 (2396)
-+..|+..+|.+||.|| |+++|+.++.+|+.|+..+.
T Consensus 14 ~~~~lp~~~~~~i~~~l--~~~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 14 LITSLPFEISLKIFNYL--QFEDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp HHHHSCHHHHHHHHTTS--CHHHHHHHHTTCHHHHHHHT
T ss_pred ChHHCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHc
Confidence 45679999999999999 99999999999999998764
No 43
>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1
Probab=82.40 E-value=0.49 Score=46.35 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=41.2
Q ss_pred ccccCcEEEeccCCcccCchhhhhhhhhhhcCcccccchhhccCCC
Q 000079 637 DSSVGKWFYLDHCGMECGPSRLCDLKTLVEEGVLVSDHFIKHLDSN 682 (2396)
Q Consensus 637 ds~~GkWfyld~~G~e~gp~~l~~lk~l~~~g~l~~dh~ikh~d~~ 682 (2396)
+...-.|+|+|..|..|||=...+|+.-.+.||+..|-+|...+..
T Consensus 14 ~~~~~~W~Y~Dp~g~iQGPFs~~~M~~W~~~GyF~~~L~Vrr~~~~ 59 (78)
T 1wh2_A 14 DKEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGES 59 (78)
T ss_dssp CSSSCCEEEECTTSCEEEEECHHHHHHHHTTTSSCSCCEEEETTSC
T ss_pred CcccCeEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEeCCC
Confidence 3444689999999999999999999999999999999999988744
No 44
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.14 E-value=3.9 Score=42.98 Aligned_cols=68 Identities=18% Similarity=0.375 Sum_probs=55.7
Q ss_pred chhhHHHHHHHHHHHHHHHHhccccccc---c----------hhHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1426 ENGYKRMEEFLASSLKEIMRVNTFEFFV---P----------KVAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1426 e~~y~~~~~~~~~~l~~im~~~~~~~f~---~----------kv~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
++-++.+..||..-|..+|+......|. | =...|+.|+++|+|.+ +..+..|+..|+.+|+.+-.
T Consensus 7 ~~~~~~L~~~~~~il~~l~~~~~~~~F~~P~pdY~~iIk~PmDL~tI~~kl~~~~Y~s--~~~f~~D~~Li~~Na~~yN~ 84 (131)
T 2dkw_A 7 GNTLRELRLFLRDVTKRLATDKRFNIFSKPVSDYLEVIKEPMDLSTVITKIDKHNYLT--AKDFLKDIDLICSNALEYNP 84 (131)
T ss_dssp THHHHHHHHHHHHHHHHHHHSGGGCTTSSCCSSCTTSCSSCCCHHHHHHHHHTTCCCS--SHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCccchhhcCcCccHHhHcCCCcCHHHHHHHHcCCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 3456788899999999999988888785 3 2348999999999975 78899999999999999755
Q ss_pred CCC
Q 000079 1493 RGS 1495 (2396)
Q Consensus 1493 ~~~ 1495 (2396)
.++
T Consensus 85 ~~s 87 (131)
T 2dkw_A 85 DKD 87 (131)
T ss_dssp CSS
T ss_pred CCC
Confidence 443
No 45
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=81.65 E-value=1.4 Score=45.49 Aligned_cols=61 Identities=20% Similarity=0.416 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhHHHHHHHHHHHhc
Q 000079 1430 KRMEEFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAK 1491 (2396)
Q Consensus 1430 ~~~~~~~~~~l~~im~~~~~~~f~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~ 1491 (2396)
..+.+++..-|+.+|+.....+|.--| ..|+.|+++|+|. .+..+..|+..|+.+|+.+-
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~--~~~~f~~D~~li~~Na~~yN 89 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYK--SVTEFKADFKLMCDNAMTYN 89 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCC--SHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCC--CHHHHHHHHHHHHHHHHHHC
Confidence 456678888899999988877885422 3899999999995 56788999999999999874
Q ss_pred c
Q 000079 1492 N 1492 (2396)
Q Consensus 1492 ~ 1492 (2396)
.
T Consensus 90 ~ 90 (123)
T 3hme_A 90 R 90 (123)
T ss_dssp C
T ss_pred C
Confidence 4
No 46
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=81.30 E-value=0.62 Score=55.35 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=34.6
Q ss_pred CccccCcchHHHHHHHHhhhchhHHHHhhhhchhHHHHHH
Q 000079 1204 GGWGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR 1243 (2396)
Q Consensus 1204 ~~w~~l~g~~larvfh~lr~d~ksl~~~~~tc~~w~~~~~ 1243 (2396)
++|.-|+-.||.+||+|| +.|.|.-++.||++||..++
T Consensus 3 ~~l~~LP~ei~l~IlsfL--~p~DL~~l~~vcr~Wr~la~ 40 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFL--SPHDLCQLGSTNHYWNETVR 40 (312)
T ss_dssp CHHHHSCHHHHHHHHHTS--CHHHHHHHHTTCHHHHHHHT
T ss_pred chhHhCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhc
Confidence 568889999999999999 67889999999999999875
No 47
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=80.54 E-value=2.8 Score=43.01 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=48.4
Q ss_pred chhhHHHHHHHHHHHHHHHHhcc------cccccc------------------hhHHHHhhhccccccccCCcchhhHHH
Q 000079 1426 ENGYKRMEEFLASSLKEIMRVNT------FEFFVP------------------KVAEIEGRMKKGYYISHGLGSVKDDIS 1481 (2396)
Q Consensus 1426 e~~y~~~~~~~~~~l~~im~~~~------~~~f~~------------------kv~~ie~~~k~gyy~~~g~~~~k~di~ 1481 (2396)
|++=..|.+.|..-|..||+.-. ...|.- -...|+.||++|+|.+ +..+..|+.
T Consensus 3 ~~~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s--~~~f~~D~~ 80 (120)
T 3ljw_A 3 GSSPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKS--IHAMAKDID 80 (120)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCS--HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCC--HHHHHHHHH
Confidence 34445666777788888887543 445542 1248999999999954 778999999
Q ss_pred HHHHHHHHhcc
Q 000079 1482 RMCRDAIKAKN 1492 (2396)
Q Consensus 1482 ~~~r~a~~~~~ 1492 (2396)
.|+.+|..+-.
T Consensus 81 li~~Na~~yN~ 91 (120)
T 3ljw_A 81 LLAKNAKTYNE 91 (120)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHCC
Confidence 99999998754
No 48
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=79.84 E-value=2.6 Score=43.43 Aligned_cols=58 Identities=12% Similarity=0.122 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhHHHHHHHHHHHhccC
Q 000079 1434 EFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNR 1493 (2396)
Q Consensus 1434 ~~~~~~l~~im~~~~~~~f~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~~ 1493 (2396)
.++..-|.+||+......|.--| ..|+.||++|+|.+ +..+..|+..|+.+|+.+-..
T Consensus 16 ~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s--~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 16 AAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQK--MEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp HHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSS--HHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCCC
Confidence 45667788888877776664422 38999999999975 778999999999999987553
No 49
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=79.56 E-value=2.5 Score=45.39 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1434 EFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1434 ~~~~~~l~~im~~~~~~~f~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
+.|...|+.||+......|.-.| ..|+.||++|+|.+ +..|..|+..|+.+|+.+-.
T Consensus 75 ~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s--~~~f~~D~~li~~Na~~yN~ 149 (174)
T 2ri7_A 75 EGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEK--LTEFVADMTKIFDNCRYYNP 149 (174)
T ss_dssp HHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCB--HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 34566777888776666664322 47999999999976 77899999999999998754
No 50
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=79.50 E-value=3 Score=43.38 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhcccccccch--------------------hHHHHhhhccccccccCCcchhhHHHHHHHHHHHh
Q 000079 1431 RMEEFLASSLKEIMRVNTFEFFVPK--------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKA 1490 (2396)
Q Consensus 1431 ~~~~~~~~~l~~im~~~~~~~f~~k--------------------v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~ 1490 (2396)
.|..++..-|..||+......|.-- ...|+.|+++|+|.+ +..+..|+..|+.+|+.+
T Consensus 21 ~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s--~~ef~~D~~li~~Na~~y 98 (127)
T 2oss_A 21 QLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWN--AQECIQDFNTMFTNCYIY 98 (127)
T ss_dssp HHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHHHHH
Confidence 4555666678888887766666421 248999999999965 788999999999999997
Q ss_pred cc
Q 000079 1491 KN 1492 (2396)
Q Consensus 1491 ~~ 1492 (2396)
-.
T Consensus 99 N~ 100 (127)
T 2oss_A 99 NK 100 (127)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 51
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=79.31 E-value=2 Score=50.20 Aligned_cols=67 Identities=10% Similarity=0.202 Sum_probs=52.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcccccccchhH------------------HHHhhhccccccccCCcchhhHHHHHHHH
Q 000079 1425 SENGYKRMEEFLASSLKEIMRVNTFEFFVPKVA------------------EIEGRMKKGYYISHGLGSVKDDISRMCRD 1486 (2396)
Q Consensus 1425 ~e~~y~~~~~~~~~~l~~im~~~~~~~f~~kv~------------------~ie~~~k~gyy~~~g~~~~k~di~~~~r~ 1486 (2396)
.....-.+-.++...|.+||+......|.--|. .|+.||++|+|.+ +..+..|+..|+.+
T Consensus 41 ~~~p~~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s--~~~f~~D~~li~~N 118 (292)
T 3aad_A 41 RTDPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPS--REEFREHLELIVKN 118 (292)
T ss_dssp -CCHHHHHHHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSS--HHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCC--HHHHHHHHHHHHHH
Confidence 334455567788888899998777777766443 7999999999975 78899999999999
Q ss_pred HHHhccC
Q 000079 1487 AIKAKNR 1493 (2396)
Q Consensus 1487 a~~~~~~ 1493 (2396)
|+.+-..
T Consensus 119 a~~yN~~ 125 (292)
T 3aad_A 119 SATYNGP 125 (292)
T ss_dssp HHHHTCS
T ss_pred HHHHcCC
Confidence 9987543
No 52
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=78.52 E-value=5 Score=43.12 Aligned_cols=60 Identities=13% Similarity=0.219 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHhcccccccc----h----------------hHHHHhhhccccccccCCcchhhHHHHHHHHHHHh
Q 000079 1431 RMEEFLASSLKEIMRVNTFEFFVP----K----------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKA 1490 (2396)
Q Consensus 1431 ~~~~~~~~~l~~im~~~~~~~f~~----k----------------v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~ 1490 (2396)
.|..++..-|..+|+......|.- + ...|+.||++|+|. -+..|..|+..|+.+|+.+
T Consensus 32 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~--s~~ef~~Dv~Lif~Na~~Y 109 (154)
T 4alg_A 32 QLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYW--AASECMQDFNTMFTNCYIY 109 (154)
T ss_dssp HHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCS--SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHH
Confidence 455556666777787655555532 1 24899999999996 4678999999999999987
Q ss_pred cc
Q 000079 1491 KN 1492 (2396)
Q Consensus 1491 ~~ 1492 (2396)
-.
T Consensus 110 N~ 111 (154)
T 4alg_A 110 NK 111 (154)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 53
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=76.96 E-value=3 Score=45.32 Aligned_cols=61 Identities=13% Similarity=0.142 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHhcccccccch--------------------hHHHHhhhccccccccCCcchhhHHHHHHHHHHH
Q 000079 1430 KRMEEFLASSLKEIMRVNTFEFFVPK--------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIK 1489 (2396)
Q Consensus 1430 ~~~~~~~~~~l~~im~~~~~~~f~~k--------------------v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~ 1489 (2396)
+.+..++..-|..||+.....+|.-- ...|+.||++|+|.+ +..|..|+..|+.+|+.
T Consensus 20 ~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s--~~ef~~Dv~Lif~Na~~ 97 (166)
T 3fkm_X 20 KQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAY--PSEFVKDVQLIFDNCSL 97 (166)
T ss_dssp HHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCC--HHHHHHHHHHHHHHHHH
Confidence 44556777888889987766666432 138999999999985 78899999999999998
Q ss_pred hcc
Q 000079 1490 AKN 1492 (2396)
Q Consensus 1490 ~~~ 1492 (2396)
+-.
T Consensus 98 yN~ 100 (166)
T 3fkm_X 98 YNT 100 (166)
T ss_dssp SSC
T ss_pred HCC
Confidence 744
No 54
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=76.83 E-value=3.4 Score=42.08 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcccccccc------------------hhHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1434 EFLASSLKEIMRVNTFEFFVP------------------KVAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1434 ~~~~~~l~~im~~~~~~~f~~------------------kv~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
..|..-|..||+......|.- =...|+.||++|+|. .+..+..|+..|+.+|..+-.
T Consensus 19 ~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~--~~~~f~~D~~li~~Na~~yN~ 93 (116)
T 3nxb_A 19 TAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYC--TKEEFVNDMKTMFRNCRKYNG 93 (116)
T ss_dssp HHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCS--SHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCC--CHHHHHHHHHHHHHHHHHHCC
Confidence 566677888888776666642 124899999999995 577899999999999998754
No 55
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=76.43 E-value=1.3 Score=52.20 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=34.8
Q ss_pred cCccccCcchHHHHHHHHhhhchhHHH-HhhhhchhHHHHHH
Q 000079 1203 SGGWGLLDGHTLAHVFHFLRSDMKSLA-FASLTCRHWRAAVR 1243 (2396)
Q Consensus 1203 ~~~w~~l~g~~larvfh~lr~d~ksl~-~~~~tc~~w~~~~~ 1243 (2396)
......|+..+|..||.+| ++++|+ -++++||.|++.+.
T Consensus 48 ~~~~~~LP~ell~~Il~~L--p~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAEL--PATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTS--CHHHHHHTGGGTCHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcC--CHHHHHHHHHHHhHHHHHHhc
Confidence 4467789999999999998 789999 99999999999874
No 56
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.94 E-value=6.1 Score=40.77 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=30.4
Q ss_pred HHHHhhhccccccccCCcchhhHHHHHHHHHHHhccC
Q 000079 1457 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNR 1493 (2396)
Q Consensus 1457 ~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~~ 1493 (2396)
..|+.||++|+|.+ +..|..|+..|+.+|+.+-..
T Consensus 63 ~tI~~kl~~~~Y~s--~~~f~~D~~li~~Na~~yN~~ 97 (123)
T 2dat_A 63 KKIKERIRNHKYRS--LGDLEKDVMLLCHNAQTFNLE 97 (123)
T ss_dssp HHHHHHHTTTCCCS--HHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHCCC
Confidence 48999999999965 678999999999999997553
No 57
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=75.68 E-value=1.4 Score=51.15 Aligned_cols=35 Identities=29% Similarity=0.572 Sum_probs=30.5
Q ss_pred ccCcch----HHHHHHHHhhhchhHHHHhhhhchhHHHHHH
Q 000079 1207 GLLDGH----TLAHVFHFLRSDMKSLAFASLTCRHWRAAVR 1243 (2396)
Q Consensus 1207 ~~l~g~----~larvfh~lr~d~ksl~~~~~tc~~w~~~~~ 1243 (2396)
..|+.. +|.+||.|| |.++|+.++.+||+|+..+.
T Consensus 12 ~~lp~e~~~~~~~~i~~~l--~~~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 12 TALPARGLDHIAENILSYL--DAKSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTC--CHHHHHHHHHHCHHHHHHHH
T ss_pred HHCCcchHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhc
Confidence 346666 999999999 79999999999999998864
No 58
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=75.23 E-value=4.5 Score=42.25 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchh------------------HHHHhhhccccccccCCcchhhHHHHHHHHHHHhc
Q 000079 1430 KRMEEFLASSLKEIMRVNTFEFFVPKV------------------AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAK 1491 (2396)
Q Consensus 1430 ~~~~~~~~~~l~~im~~~~~~~f~~kv------------------~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~ 1491 (2396)
..+.+.+..-|..||+......|.--| ..|+.||++|+|. .+..+..|+..|+.+|+.+-
T Consensus 20 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~--~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYE--SPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp STHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCS--SHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCC--CHHHHHHHHHHHHHHHHHHC
Confidence 345677788889999877777775322 3799999999997 57789999999999999874
Q ss_pred c
Q 000079 1492 N 1492 (2396)
Q Consensus 1492 ~ 1492 (2396)
.
T Consensus 98 ~ 98 (135)
T 3mb3_A 98 P 98 (135)
T ss_dssp C
T ss_pred C
Confidence 4
No 59
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=74.96 E-value=5.7 Score=40.58 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHhc--ccccccc---h----------------hHHHHhhhccccccccCCcchhhHHHHHHHHHH
Q 000079 1430 KRMEEFLASSLKEIMRVN--TFEFFVP---K----------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAI 1488 (2396)
Q Consensus 1430 ~~~~~~~~~~l~~im~~~--~~~~f~~---k----------------v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~ 1488 (2396)
..+-+.|...|..+|+.. +.-|-.| + ...|+.||++|+|.+ +..+..|+..|+.+|+
T Consensus 10 ~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~--~~~f~~D~~li~~Na~ 87 (119)
T 3p1f_A 10 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQE--PWQYVDDVWLMFNNAW 87 (119)
T ss_dssp HHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHH
Confidence 445567777888888743 3344433 1 248999999999965 6789999999999999
Q ss_pred Hhcc
Q 000079 1489 KAKN 1492 (2396)
Q Consensus 1489 ~~~~ 1492 (2396)
.+-.
T Consensus 88 ~yN~ 91 (119)
T 3p1f_A 88 LYNR 91 (119)
T ss_dssp HHSC
T ss_pred HHCC
Confidence 8754
No 60
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=74.53 E-value=4.6 Score=45.38 Aligned_cols=36 Identities=14% Similarity=0.384 Sum_probs=19.4
Q ss_pred ccceEEecccccCChhHHHHHHHhCC-CccEEeeccc
Q 000079 1277 KLNSILLVGCTNITSGMLEEILQSFP-HLSSIDIRGC 1312 (2396)
Q Consensus 1277 ~~~~~~l~~c~n~~~~~l~~~l~~~p-~~~~~~i~gc 1312 (2396)
+++.+-|.+|.+++...+..++..+| .|.+++|+||
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 45555555555555555555555555 5555555555
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=72.72 E-value=1.7 Score=50.36 Aligned_cols=38 Identities=34% Similarity=0.443 Sum_probs=34.0
Q ss_pred CccccCcchHHHHHHHHhhhchhHHHHhhhhchhHHHHHH
Q 000079 1204 GGWGLLDGHTLAHVFHFLRSDMKSLAFASLTCRHWRAAVR 1243 (2396)
Q Consensus 1204 ~~w~~l~g~~larvfh~lr~d~ksl~~~~~tc~~w~~~~~ 1243 (2396)
.-...|+..+|.+||-|| |.++|+-++.+|+.|+..+.
T Consensus 17 d~~~~lp~e~~~~i~~~l--~~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFL--EPKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp STTTSSCHHHHHHHHTTS--CHHHHHHHTTSCHHHHHHHT
T ss_pred ChhHHCCHHHHHHHHHhC--CHHHHHHHHHHhHHHHhhcC
Confidence 346789999999999999 79999999999999998763
No 62
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=71.88 E-value=5.5 Score=40.56 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcccccccch------------------hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1434 EFLASSLKEIMRVNTFEFFVPK------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1434 ~~~~~~l~~im~~~~~~~f~~k------------------v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
.++..-|.+||+..-...|.-- ...|+.||++|+|. .+..+..|+..|+.+|..+-.
T Consensus 16 ~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~--~~~~f~~D~~li~~Na~~yN~ 90 (117)
T 3g0l_A 16 ALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYP--NLETFALDVRLVFDNCETFNE 90 (117)
T ss_dssp HHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCC--SHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCC--CHHHHHHHHHHHHHHHHHHCC
Confidence 4556677888887666666321 23899999999997 577899999999999998754
No 63
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=70.54 E-value=7.7 Score=40.40 Aligned_cols=61 Identities=16% Similarity=0.342 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhc-------ccccc-cc-----------------hhHHHHhhhccccccccCCcchhhHHHHHHH
Q 000079 1431 RMEEFLASSLKEIMRVN-------TFEFF-VP-----------------KVAEIEGRMKKGYYISHGLGSVKDDISRMCR 1485 (2396)
Q Consensus 1431 ~~~~~~~~~l~~im~~~-------~~~~f-~~-----------------kv~~ie~~~k~gyy~~~g~~~~k~di~~~~r 1485 (2396)
++-..+..-|..||+.- -...| -| =...|+.||++|+|.+ +..|..|+..|+.
T Consensus 11 ~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s--~~~f~~Dv~Li~~ 88 (129)
T 2grc_A 11 NLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRS--LNDLEKDVMLLCQ 88 (129)
T ss_dssp HHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHH
Confidence 44566777788888753 12333 33 1248999999999965 6789999999999
Q ss_pred HHHHhccC
Q 000079 1486 DAIKAKNR 1493 (2396)
Q Consensus 1486 ~a~~~~~~ 1493 (2396)
+|+.+-..
T Consensus 89 Na~~yN~~ 96 (129)
T 2grc_A 89 NAQTFNLE 96 (129)
T ss_dssp HHHHHSCT
T ss_pred HHHHHCCC
Confidence 99997553
No 64
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=67.89 E-value=7.8 Score=39.92 Aligned_cols=58 Identities=16% Similarity=0.119 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhcccccccch------------------hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhc
Q 000079 1432 MEEFLASSLKEIMRVNTFEFFVPK------------------VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAK 1491 (2396)
Q Consensus 1432 ~~~~~~~~l~~im~~~~~~~f~~k------------------v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~ 1491 (2396)
+.+.+..-|..||+......|.-- ...|+.||++|+|.+ +..+..|+..|+.+|..+-
T Consensus 11 ~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~--~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 11 WKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDS--PLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp HHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSS--HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHC
Confidence 445566778888887766666531 248999999999964 6789999999999999874
No 65
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=67.00 E-value=7.7 Score=39.53 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=29.8
Q ss_pred HHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1457 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1457 ~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
..|+.|+++|+|. .+..+..|+..|+.+|..+-.
T Consensus 55 ~tI~~kl~~~~Y~--s~~~f~~D~~li~~Na~~yN~ 88 (116)
T 3iu5_A 55 MKIQQKLKMEEYD--DVNLLTADFQLLFNNAKSYYK 88 (116)
T ss_dssp HHHHHHHHTTCCC--SHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHHHCC
Confidence 4899999999995 567899999999999998754
No 66
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=64.83 E-value=14 Score=38.16 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=29.8
Q ss_pred HHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1457 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1457 ~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
..|+.||++|+|. .+..+..|+..|+.+|..+-.
T Consensus 65 ~tI~~kl~~~~Y~--~~~~f~~D~~li~~Na~~yN~ 98 (124)
T 3mb4_A 65 EKIRSHMMANKYQ--DIDSMVEDFVMMFNNACTYNE 98 (124)
T ss_dssp HHHHHHHHTTCCC--SHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHHHCC
Confidence 4899999999995 467899999999999998754
No 67
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=64.50 E-value=14 Score=38.18 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=30.0
Q ss_pred HHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1457 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1457 ~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
..|+.|+++|+|. -+..+..|+..|+.+|..+-.
T Consensus 59 ~tI~~kl~~~~Y~--s~~~f~~D~~li~~Na~~yN~ 92 (126)
T 3mqm_A 59 ITIEKQILTGYYK--TVEAFDADMLKVFRNAEKYYG 92 (126)
T ss_dssp HHHHHHHHHTCCC--SHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHHHCC
Confidence 4899999999995 467899999999999998754
No 68
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=63.43 E-value=10 Score=38.75 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=30.1
Q ss_pred HHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1457 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1457 ~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
..|+.||++|+|.+ +..+..|+..|+.+|+.+-.
T Consensus 58 ~tI~~kl~~~~Y~~--~~~f~~D~~li~~Na~~yN~ 91 (120)
T 3jvl_A 58 STIKSKLESREYRD--AQEFGADVRLMFSNCYKYNP 91 (120)
T ss_dssp HHHHHHHHTTCCCS--HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHccCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 48999999999974 77899999999999998744
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=63.08 E-value=12 Score=45.37 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=40.6
Q ss_pred ceeeecCCCCCCchhHHHHHHHhhccccccceEEecccccCChhHHHHHHHhCCCccEEeecccc
Q 000079 1249 SRQVDLSSVGPNCTDSLIRKTLNAFDKEKLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCG 1313 (2396)
Q Consensus 1249 ~~~vdls~~g~~ctd~~~~~~~~~y~~~~~~~~~l~~c~n~~~~~l~~~l~~~p~~~~~~i~gc~ 1313 (2396)
-+.++|+.-+ -||..+..++.+. .+++.+-|.+|. ++...+..++..+|.|.+++|+||.
T Consensus 465 L~~L~L~~n~--l~~~~~~~~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 465 VRWMLLGYVG--ESDEGLMEFSRGC--PNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCEEEECSCC--SSHHHHHHHHTCC--TTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ceEeeccCCC--CCHHHHHHHHhcC--cccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 4566666433 3555555555444 567777777777 7777777777777888888888776
No 70
>1syx_B CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2, CD; GYF-domain, thioredoxin-like, spliceosomal proteins, transla immune system complex; 2.35A {Homo sapiens} SCOP: d.76.1.1 PDB: 1gyf_A 1l2z_A
Probab=59.72 E-value=5.3 Score=40.04 Aligned_cols=48 Identities=23% Similarity=0.361 Sum_probs=40.4
Q ss_pred ceEEe---cCCCCccCCCcHHHHHHHHhhcccccccccccccC---ceeeecccc
Q 000079 996 EWYYL---DGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFD---KVWVPLTFA 1044 (2396)
Q Consensus 996 ~w~yl---dg~g~e~gp~s~selq~~v~~g~i~~~ssvfrk~d---~~wvp~~~~ 1044 (2396)
-|.|. |..|.-+||||=+|+|...++|....+ -.+|+.. ..|.||...
T Consensus 27 ~WeYKW~~~~~~~i~GPfs~~eM~~W~~~GYF~~~-v~vRrvg~~~~~Fy~~~rI 80 (86)
T 1syx_B 27 MWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDG-VYCRKLDPPGGQFYNSKRI 80 (86)
T ss_dssp EEEEESSSSSSSCCEEEEEHHHHHHHHHTTSCTTC-CEEEESSSTTCCCEEGGGC
T ss_pred eEEEEecCCCCCcccCCcCHHHHHHHHHCCCcCCC-eEEEEecCCCCceEEeeee
Confidence 49999 777889999999999999999999964 5667654 689988654
No 71
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=56.00 E-value=9.4 Score=39.87 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=30.6
Q ss_pred HHHHhhhccccccccCCcchhhHHHHHHHHHHHhccC
Q 000079 1457 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNR 1493 (2396)
Q Consensus 1457 ~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~~ 1493 (2396)
..|+.||++|+|.+ +..|..|+..|+.+|+.+-..
T Consensus 71 ~tI~~kl~~~~Y~s--~~ef~~Dv~li~~Na~~yN~~ 105 (130)
T 2ouo_A 71 STIKSKLEAREYRD--AQEFGADVRLMFSNCYKYNPP 105 (130)
T ss_dssp HHHHHHHHTTCCSS--HHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHcCCCCC--HHHHHHHHHHHHHHHHHHcCC
Confidence 48999999999975 678999999999999997553
No 72
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=53.65 E-value=21 Score=37.91 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=29.8
Q ss_pred HHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1457 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1457 ~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
..|+.||++|+|.+ +..|..|+..|+.+|..+-.
T Consensus 75 ~tI~~kl~~~~Y~s--~~ef~~D~~li~~Na~~yN~ 108 (150)
T 3tlp_A 75 KIIEHNIRNDKYAG--EEGMIEDMKLMFRNARHYNE 108 (150)
T ss_dssp HHHHHHHHTTCCSS--HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 48999999999965 57899999999999998744
No 73
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=52.07 E-value=30 Score=36.28 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=29.8
Q ss_pred HHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1457 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1457 ~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
..|+.||++|+|.+ +..|..|+..|+.+|..+-.
T Consensus 67 ~tI~~kL~~~~Y~s--~~ef~~Dv~Lif~Na~~yN~ 100 (130)
T 3k2j_A 67 QQIRTKLKNQEYET--LDHLECDLNLMFENAKRYNV 100 (130)
T ss_dssp HHHHHHHHTTCCSS--HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 48999999999954 77899999999999998743
No 74
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=51.36 E-value=20 Score=41.31 Aligned_cols=61 Identities=8% Similarity=0.218 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhcccccccc------------------hhHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1431 RMEEFLASSLKEIMRVNTFEFFVP------------------KVAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1431 ~~~~~~~~~l~~im~~~~~~~f~~------------------kv~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
.+...|..-|..||+.....+|.- -...|+.|+++|+|. .+..|..|+..|+.+|..+-.
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~--~~~~f~~D~~li~~Na~~yN~ 91 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYP--SREEFREHLELIVKNSATYNG 91 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCS--SHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCC--CHHHHHHHHHHHHhhhhhcCC
Confidence 455667777778887666566642 124899999999996 567899999999999998754
Q ss_pred C
Q 000079 1493 R 1493 (2396)
Q Consensus 1493 ~ 1493 (2396)
.
T Consensus 92 ~ 92 (265)
T 3uv5_A 92 P 92 (265)
T ss_dssp T
T ss_pred C
Confidence 3
No 75
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=51.05 E-value=23 Score=37.25 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcccccccc-----------------hhHHHHhhhcc--ccccccCCcchhhHHHHHHHHHHHhccC
Q 000079 1434 EFLASSLKEIMRVNTFEFFVP-----------------KVAEIEGRMKK--GYYISHGLGSVKDDISRMCRDAIKAKNR 1493 (2396)
Q Consensus 1434 ~~~~~~l~~im~~~~~~~f~~-----------------kv~~ie~~~k~--gyy~~~g~~~~k~di~~~~r~a~~~~~~ 1493 (2396)
+++..-|..||+......|.- =...|+.||++ |+|. -+..|..|+..|+.+|+.+-..
T Consensus 23 ~~c~~il~~L~~~~~s~~F~~Pv~~~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~--s~~ef~~Dv~Lif~Na~~yN~~ 99 (135)
T 2yyn_A 23 RKCERLLLFLYCHEMSLAFQDPVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYS--KPEDFVADFRLIFQNCAEFNEP 99 (135)
T ss_dssp HHHHHHHHHHHTSGGGGGGSSCCCTTSTTHHHHCSSCCCHHHHHHHHHSSSCCCS--SHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHhCccchhhcCCCcccCCCHHHHcCCCCCHHHHHHHHhccccCCC--CHHHHHHHHHHHHHHHHHHCCC
Confidence 345566778888777777742 12489999998 5774 4788999999999999987543
No 76
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=51.02 E-value=20 Score=38.71 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.1
Q ss_pred HHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1457 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1457 ~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
..|+.||++|+|.+ +..|..|+..|+.+|+.+-.
T Consensus 74 ~tI~~kl~~~~Y~s--~~ef~~Dv~Lif~Na~~yN~ 107 (158)
T 3uv4_A 74 ETIRKNISKHKYQS--RESFLDDVNLILANSVKYNG 107 (158)
T ss_dssp HHHHHHHHTTCCSS--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 48999999999965 77899999999999998754
No 77
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=50.77 E-value=16 Score=39.70 Aligned_cols=56 Identities=11% Similarity=0.091 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcccccccc-----------------hhHHHHhhhcc--ccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1435 FLASSLKEIMRVNTFEFFVP-----------------KVAEIEGRMKK--GYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1435 ~~~~~l~~im~~~~~~~f~~-----------------kv~~ie~~~k~--gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
.+..-|..||+.....+|.- -...|+.||++ |+|.+ +..|..||..|+.+|+.+-.
T Consensus 85 ~c~~il~~l~~~~~s~~F~~Pv~~~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s--~~ef~~Dv~li~~Na~~yN~ 159 (184)
T 3o36_A 85 KCERLLLFLYCHEMSLAFQDPVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSK--PEDFVADFRLIFQNCAEFNE 159 (184)
T ss_dssp HHHHHHHHHHHSTTCHHHHSCCCTTSTTHHHHCSSCCCHHHHHHHHHSTTCSCCS--HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhchhhhhhccccccCCCchhhhcCCCCCHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 34455666777666666642 23489999998 66755 67889999999999998754
No 78
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=46.84 E-value=25 Score=42.52 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=42.2
Q ss_pred ceeeecCCCCCCchhHHHHHHHhhccccccceEEecccccCChhHHHHHHHhCCCccEEeeccccc
Q 000079 1249 SRQVDLSSVGPNCTDSLIRKTLNAFDKEKLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQ 1314 (2396)
Q Consensus 1249 ~~~vdls~~g~~ctd~~~~~~~~~y~~~~~~~~~l~~c~n~~~~~l~~~l~~~p~~~~~~i~gc~q 1314 (2396)
-+.+||+. .-||..+..|.. .-.+++.+.|.+|. +|...+..++..+|.|.+++|++|.-
T Consensus 434 L~~L~L~~---~l~~~~~~~l~~--~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 434 LRRLSLSG---LLTDKVFEYIGT--YAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CCEEECCS---SCCHHHHHHHHH--HCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred ccEEeecC---cccHHHHHHHHH--hchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 45677754 667777766654 23467888886665 77777777777888888888888864
No 79
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X*
Probab=29.38 E-value=7.6 Score=42.72 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=20.9
Q ss_pred cCCCCcccccccc-----cccccccccCC
Q 000079 1646 TTDEGLDFSDDRE-----WGARMTKASLV 1669 (2396)
Q Consensus 1646 ~~~dgl~~i~~~~-----~G~~m~k~~lv 1669 (2396)
..|||||.|.+.| .|..++|+.|+
T Consensus 125 yrYDGLY~V~~~w~e~g~~G~~v~kf~L~ 153 (167)
T 3q0b_X 125 YVYDGLYLVEEYWEETGSHGKLVFKFKLR 153 (167)
T ss_dssp EEEEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred EEECeEEEEeeeEEeeCCCCcEEEEEEEE
Confidence 4589999998777 78899999998
No 80
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=28.38 E-value=51 Score=35.85 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=43.8
Q ss_pred hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHhhhccccchhhHHHHHhh
Q 000079 1456 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKNRGSAGDMNRITTLFIQLATRLEQGAKSSYYEREEMMKS 1530 (2396)
Q Consensus 1456 v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~r~~~~~~ 1530 (2396)
...|..|++.|.|. -|..+.+|+..||.+|-. -|+-+|..++-++.|- . .+-..|+++.+.
T Consensus 52 l~~Ikkri~~~~Y~--sld~f~~D~~lmf~NAr~-yN~e~S~IyeDAv~Lq---------~--~f~~~r~eL~~~ 112 (147)
T 3iu6_A 52 FDIIRKNVENNRYR--RLDLFQEHMFEVLERARR-MNRTDSEIYEDAVELQ---------Q--FFIKIRDELCKN 112 (147)
T ss_dssp HHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHH-HSCTTSHHHHHHHHHH---------H--HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHH---------H--HHHHHHHHHhhC
Confidence 34799999999995 588899999999999955 4666665555554442 1 234467777765
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=27.74 E-value=84 Score=36.82 Aligned_cols=66 Identities=17% Similarity=0.321 Sum_probs=47.5
Q ss_pred cceeeecCCCCCCchhHHHHHHHhhcc--ccccceEEecccccCChh---HHHHHHHhCCCccEEeecccccccc
Q 000079 1248 ISRQVDLSSVGPNCTDSLIRKTLNAFD--KEKLNSILLVGCTNITSG---MLEEILQSFPHLSSIDIRGCGQFGE 1317 (2396)
Q Consensus 1248 ~~~~vdls~~g~~ctd~~~~~~~~~y~--~~~~~~~~l~~c~n~~~~---~l~~~l~~~p~~~~~~i~gc~q~~~ 1317 (2396)
.-+.+||+.- .-+|..+..+.++.. ..+++.+-|.+| +|+.. ++...|..+|.|.++||+|| +|++
T Consensus 342 ~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~ 412 (461)
T 1z7x_W 342 FLLELQISNN--RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGD 412 (461)
T ss_dssp SCCEEECCSS--BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCH
T ss_pred CccEEEccCC--ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCCH
Confidence 3467888765 466766666665554 358999999998 67763 56666778999999999998 4543
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=26.97 E-value=46 Score=37.08 Aligned_cols=32 Identities=28% Similarity=0.521 Sum_probs=27.8
Q ss_pred HHHHhhhccccccccCCcchhhHHHHHHHHHHHh
Q 000079 1457 AEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKA 1490 (2396)
Q Consensus 1457 ~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~ 1490 (2396)
.-|+.||++|+|.+ +..+-+||..|+.++++.
T Consensus 108 ~~i~kKl~~~~Y~s--~~eF~~Dv~lIf~n~~~~ 139 (183)
T 3lqh_A 108 EGVKRKMDQGNYTS--VLEFSDDIVKIIQAAINS 139 (183)
T ss_dssp HHHHHHHHTTCCCC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCC--HHHHHHHHHHHHHHHhhc
Confidence 48999999999976 469999999999998764
No 83
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=24.08 E-value=89 Score=37.71 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHhcc---cccccc-----------------hhHHHHhhhccccccccCCcchhhHHHHHHHHHHH
Q 000079 1430 KRMEEFLASSLKEIMRVNT---FEFFVP-----------------KVAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIK 1489 (2396)
Q Consensus 1430 ~~~~~~~~~~l~~im~~~~---~~~f~~-----------------kv~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~ 1489 (2396)
-.|+.|+...|..+++... ..|..| =...|+.|| ..||. .+..|..|+..||.+|+.
T Consensus 77 ~~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl-~~y~~--~~~~f~~D~~li~~Na~~ 153 (361)
T 2r10_A 77 PKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD-YEYED--GPSNFLLDVELLTKNCQA 153 (361)
T ss_dssp TTHHHHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC-CCSTT--HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh-hccCC--CHHHHHHHHHHHHHHHhh
Confidence 3567888888888887654 344444 124789998 45543 677899999999999999
Q ss_pred hccCC
Q 000079 1490 AKNRG 1494 (2396)
Q Consensus 1490 ~~~~~ 1494 (2396)
+-..+
T Consensus 154 yN~~~ 158 (361)
T 2r10_A 154 YNEYD 158 (361)
T ss_dssp HBCSS
T ss_pred cCCCC
Confidence 85543
No 84
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=23.36 E-value=22 Score=36.90 Aligned_cols=86 Identities=14% Similarity=0.227 Sum_probs=49.7
Q ss_pred hhHHHHHHHhhccccccceEEecccccCChhHHHHHHHhCCCccEEeeccccccccc--cccCCcccccccccccCcccC
Q 000079 1262 TDSLIRKTLNAFDKEKLNSILLVGCTNITSGMLEEILQSFPHLSSIDIRGCGQFGEL--ALKFPNINWVKSQKSRGAKFN 1339 (2396)
Q Consensus 1262 td~~~~~~~~~y~~~~~~~~~l~~c~n~~~~~l~~~l~~~p~~~~~~i~gc~q~~~l--~~~f~~v~w~~~~~~~~~~~~ 1339 (2396)
|..++......++..+++.+.|.+| +|+. +..+...+|.|.++++++| ++..+ -..++++.++.=..+..+.++
T Consensus 5 t~~~i~~~~~~~~~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 5 TAELIEQAAQYTNAVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp CHHHHHTSCEEECTTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSCCCEEC
T ss_pred cHHHHHHHHhcCCcCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCcccccC
Confidence 3445555555667777888888887 4553 2444555568888888887 34444 123455666655555555555
Q ss_pred ccc-ccccchhhh
Q 000079 1340 DSR-SKIRSLKQI 1351 (2396)
Q Consensus 1340 ~~~-~k~~sl~~~ 1351 (2396)
..- ..+.+|+.+
T Consensus 81 ~~~~~~l~~L~~L 93 (176)
T 1a9n_A 81 EGLDQALPDLTEL 93 (176)
T ss_dssp SCHHHHCTTCCEE
T ss_pred cchhhcCCCCCEE
Confidence 443 244445444
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=22.87 E-value=51 Score=40.32 Aligned_cols=87 Identities=10% Similarity=0.148 Sum_probs=53.4
Q ss_pred eeeecCCCCCCchhHHHHHHHhhccccccceEEecccc--cCChhHHHHHHHhCCCccEEeecccccccccc-c---cCC
Q 000079 1250 RQVDLSSVGPNCTDSLIRKTLNAFDKEKLNSILLVGCT--NITSGMLEEILQSFPHLSSIDIRGCGQFGELA-L---KFP 1323 (2396)
Q Consensus 1250 ~~vdls~~g~~ctd~~~~~~~~~y~~~~~~~~~l~~c~--n~~~~~l~~~l~~~p~~~~~~i~gc~q~~~l~-~---~f~ 1323 (2396)
+.||+++-+-.= |-.+.- .+++.+-|.+|. .+.+. .+..+|.|.++++++| ++..+. . ..+
T Consensus 34 ~~l~ls~~~L~~-------ip~~~~-~~L~~L~Ls~N~i~~~~~~----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 100 (562)
T 3a79_B 34 SMVDYSNRNLTH-------VPKDLP-PRTKALSLSQNSISELRMP----DISFLSELRVLRLSHN-RIRSLDFHVFLFNQ 100 (562)
T ss_dssp CEEECTTSCCCS-------CCTTSC-TTCCEEECCSSCCCCCCGG----GTTTCTTCCEEECCSC-CCCEECTTTTTTCT
T ss_pred cEEEcCCCCCcc-------CCCCCC-CCcCEEECCCCCccccChh----hhccCCCccEEECCCC-CCCcCCHHHhCCCC
Confidence 789998765431 111121 689999999885 23333 3467899999999998 455542 2 235
Q ss_pred cccccccccccCcccCcccccccchhhh
Q 000079 1324 NINWVKSQKSRGAKFNDSRSKIRSLKQI 1351 (2396)
Q Consensus 1324 ~v~w~~~~~~~~~~~~~~~~k~~sl~~~ 1351 (2396)
++..+.=+.+..+.++.. .+.+|+.+
T Consensus 101 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L 126 (562)
T 3a79_B 101 DLEYLDVSHNRLQNISCC--PMASLRHL 126 (562)
T ss_dssp TCCEEECTTSCCCEECSC--CCTTCSEE
T ss_pred CCCEEECCCCcCCccCcc--ccccCCEE
Confidence 566665555555666655 44444444
No 86
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=21.78 E-value=71 Score=36.84 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=29.9
Q ss_pred hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1456 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1456 v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
...|+.||++|+|. .+..|..|+..|+.+|+.+-.
T Consensus 180 l~tI~~kl~~~~Y~--~~~~f~~D~~lif~Na~~yN~ 214 (265)
T 3uv5_A 180 LETIRKNISKHKYQ--SRESFLDDVNLILANSVKYNG 214 (265)
T ss_dssp HHHHHHHHHTTCCS--SHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHCC
Confidence 34899999999995 457889999999999998744
No 87
>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} SCOP: b.122.1.12 PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A*
Probab=21.32 E-value=12 Score=42.70 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=35.0
Q ss_pred CCCCcccccccc-----cccccccccCC--CCccceeeeEEeeeeccchHhHhhhcc--cccchhhhhhhc
Q 000079 1647 TDEGLDFSDDRE-----WGARMTKASLV--PPVTRKYEVIDQYVIVADEEDVRRKMR--VSLPEDYAEKLN 1708 (2396)
Q Consensus 1647 ~~dgl~~i~~~~-----~G~~m~k~~lv--P~~~rky~vI~~y~iv~D~e~v~~km~--v~lpd~~~Ekl~ 1708 (2396)
.|||||.|.+.| .|+.++|+.|+ |+-..-|+. +..+-..+++ ...|+-|.|.+-
T Consensus 142 rYDGLY~V~~~W~e~g~~G~~V~kf~L~R~~gqp~~w~~--------~~~~~~~~~~~~~~~p~~~~~~~~ 204 (212)
T 3fde_A 142 RYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEPEPWTR--------EGKDRTRQLGLTMQYPEGYLEALA 204 (212)
T ss_dssp EEEEEEEEEEEEEEECTTSSEEEEEEEEECCSSCCTTSH--------HHHHHHHHHTCCCBCCTTHHHHHH
T ss_pred EeCeEEEEEEEEEccCCCCcEEEEEEEEECCCCCCCcch--------hhHhhhhccccceeCCcchhhHhh
Confidence 699999998777 79999999998 433334432 2222334433 346777776554
No 88
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=21.26 E-value=63 Score=38.37 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=30.9
Q ss_pred hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1456 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1456 v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
...|+.||++|+|.+ +..|..|+..|+.+|+.+-.
T Consensus 206 L~tI~~kl~~~~Y~s--~~ef~~Dv~Lif~N~~~yN~ 240 (311)
T 2r0y_A 206 LSIVKQNLEIGQYSK--IYDFIIDMLLVFQNAHIFND 240 (311)
T ss_dssp HHHHHHHHHHTCCCB--HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHHHHHHHHHhCC
Confidence 678999999999954 78899999999999998754
No 89
>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} SCOP: b.122.1.12
Probab=21.08 E-value=13 Score=42.92 Aligned_cols=23 Identities=13% Similarity=-0.130 Sum_probs=20.7
Q ss_pred CCCCcccccccc-----c-ccccccccCC
Q 000079 1647 TDEGLDFSDDRE-----W-GARMTKASLV 1669 (2396)
Q Consensus 1647 ~~dgl~~i~~~~-----~-G~~m~k~~lv 1669 (2396)
.|||||.|.+.| . |..++|+.|+
T Consensus 166 rYDGLY~V~~~W~e~g~s~G~~V~Kf~L~ 194 (231)
T 3oln_A 166 RYDGIYKVVKYWPEISSSHGFLVWRYLLR 194 (231)
T ss_dssp EEEEEEEEEEEEEEECTTTCCEEEEEEEE
T ss_pred EeCeEEEEEEEEeccCCcCCeEEEEEEEE
Confidence 699999998877 6 8999999998
No 90
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=20.77 E-value=1.2e+02 Score=36.05 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhcc---cccccc-----------------hhHHHHhhhccccccccCCcchhhHHHHHHHHHHHh
Q 000079 1431 RMEEFLASSLKEIMRVNT---FEFFVP-----------------KVAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKA 1490 (2396)
Q Consensus 1431 ~~~~~~~~~l~~im~~~~---~~~f~~-----------------kv~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~ 1490 (2396)
.++.|+...|+.+.+..+ ..|..| =...|+.|+ ..||. .+..+..|+..|+.+|..+
T Consensus 28 ~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl-~~y~~--s~~~f~~D~~li~~Na~~y 104 (311)
T 2r0y_A 28 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD-YEYED--GPSNFLLDVELLTKNCQAY 104 (311)
T ss_dssp THHHHHHHHHHHHHHHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC-CCSTT--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH-hcccC--CHHHHHHHHHHHHHHHHHc
Confidence 345788888888887653 224444 123899998 45553 6788999999999999997
Q ss_pred ccC
Q 000079 1491 KNR 1493 (2396)
Q Consensus 1491 ~~~ 1493 (2396)
-..
T Consensus 105 N~~ 107 (311)
T 2r0y_A 105 NEY 107 (311)
T ss_dssp SCT
T ss_pred cCC
Confidence 553
No 91
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=20.76 E-value=1.4e+02 Score=35.07 Aligned_cols=64 Identities=20% Similarity=0.346 Sum_probs=45.7
Q ss_pred ceeeecCCCCCCchhHHHHHHHhhc--cccccceEEecccccCChhH---HHHHHHhCCCccEEeeccccccc
Q 000079 1249 SRQVDLSSVGPNCTDSLIRKTLNAF--DKEKLNSILLVGCTNITSGM---LEEILQSFPHLSSIDIRGCGQFG 1316 (2396)
Q Consensus 1249 ~~~vdls~~g~~ctd~~~~~~~~~y--~~~~~~~~~l~~c~n~~~~~---l~~~l~~~p~~~~~~i~gc~q~~ 1316 (2396)
-+.+||+.- .-+|..+..+..+. .-.+++.+.|.+| +|+... |...|..+|.|.+++|++| +++
T Consensus 229 L~~L~Ls~n--~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~ 297 (461)
T 1z7x_W 229 LRELALGSN--KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELG 297 (461)
T ss_dssp CCEEECCSS--BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCH
T ss_pred ccEEeccCC--cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCc
Confidence 457888764 34666555555443 3568999999999 788765 6666778899999999988 444
No 92
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=20.63 E-value=65 Score=38.85 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=31.1
Q ss_pred hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1456 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1456 v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
...|+.||++|+|.+ +..|..|+..|+.+|+.+-.
T Consensus 256 L~tI~~kl~~~~Y~s--~~ef~~Dv~Lif~N~~~yN~ 290 (361)
T 2r10_A 256 LSIVKQNLEIGQYSK--IYDFIIDMLLVFQNAHIFND 290 (361)
T ss_dssp HHHHHHHHHHTCCCB--HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 678999999999965 78899999999999998754
No 93
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=20.03 E-value=74 Score=37.31 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=30.8
Q ss_pred hHHHHhhhccccccccCCcchhhHHHHHHHHHHHhcc
Q 000079 1456 VAEIEGRMKKGYYISHGLGSVKDDISRMCRDAIKAKN 1492 (2396)
Q Consensus 1456 v~~ie~~~k~gyy~~~g~~~~k~di~~~~r~a~~~~~ 1492 (2396)
...|+.||++|+|.+ +..|..|+..|+.+|+.+-.
T Consensus 213 L~tI~~kl~~~~Y~s--~~~f~~D~~Li~~Na~~yN~ 247 (292)
T 3aad_A 213 LETIRKNISKHKYQS--RESFLDDVNLILANSVKYNG 247 (292)
T ss_dssp HHHHHHHHHTTCCSS--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHCC
Confidence 458999999999976 67899999999999999754
Done!