BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000080
         (2389 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
          Length = 345

 Score = 33.5 bits (75), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 13/105 (12%)

Query: 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGR------SNVRPMESCLC----FSSHA 2321
            +++ +L FD  G R AS + D TV  W+  + G       S   P   C+C    F S  
Sbjct: 195  STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254

Query: 2322 M-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH 2365
            + D+++   +G++  A G   + I V   D  + P     S+T H
Sbjct: 255  IYDIAWCQLTGALATACG--DDAIRVFQEDPNSDPQQPTFSLTAH 297


>pdb|3LLX|A Chain A, Crystal Structure Of An Ala Racemase-like Protein (il1761)
            From Idiomarina Loihiensis At 1.50 A Resolution
          Length = 376

 Score = 32.7 bits (73), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 2075 EICKRNGELFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLK 2122
            ++CK +G + + LCVNS  Q  G I  +      + LED  P+  QL+
Sbjct: 300  QVCKIDGSVLDGLCVNSTSQEHGVIELSDA----YQLED-FPVGHQLR 342


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,578,032
Number of Sequences: 62578
Number of extensions: 2992637
Number of successful extensions: 5890
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5888
Number of HSP's gapped (non-prelim): 4
length of query: 2389
length of database: 14,973,337
effective HSP length: 115
effective length of query: 2274
effective length of database: 7,776,867
effective search space: 17684595558
effective search space used: 17684595558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)