BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000080
(2389 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PNC0|DMXL1_MOUSE DmX-like protein 1 OS=Mus musculus GN=Dmxl1 PE=1 SV=1
Length = 3013
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 153/301 (50%), Gaps = 32/301 (10%)
Query: 1134 LAGVTDAEKMEILAVVDLLNEF-----DNKHSASVYENLDEPGQRFWVELRFQLLCFFRR 1188
L G+T E+M ++A+ D + +++ E LDE G +F + +R
Sbjct: 1496 LPGLTRMEQMSLMALADTIATTSTDIGESRDRNQGGETLDECGLKFLLAVRLHTFLTTSL 1555
Query: 1189 FGKLVSAEELAVDSRLIAWAFHSECQETLFGSILP----NEPTWPEMRALGVGFWYTDVT 1244
+ + AWAFHS +E L ++LP ++PTW E+RA+GVG+W +
Sbjct: 1556 PAYRAQLLHQGLSTGHFAWAFHSVAEEELL-NMLPAMQKDDPTWSELRAMGVGWWVRNAR 1614
Query: 1245 QLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQ 1304
LR +EK+A+ + + DP D A+ Y+A+ + V+ GL++ KD K + F NF+
Sbjct: 1615 ILRRCIEKVAKAAFHRNNDPLDAAIFYLAMKKKAVIWGLYRSQKDTK---MTQFFGHNFE 1671
Query: 1305 EEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEK 1364
EE+ + AALKNA+ LLG+ + E + AFFLLGG A+ VC L D+QLALVI RL E
Sbjct: 1672 EERWRKAALKNAFSLLGKQRFEHSAAFFLLGGCLKDAIEVCLEKLNDIQLALVIARLFES 1731
Query: 1365 HGGPLERNLVTKFILPSSI----------------ERGDYWLTSLLEWELGNYSQSFLTM 1408
+++ K IL + D +L S+ W L +YS + T+
Sbjct: 1732 E---FDKSATYKSILRKKVLGIGSPASELSSSSINAHHDPFLRSMAHWILEDYSAALETL 1788
Query: 1409 L 1409
+
Sbjct: 1789 I 1789
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 78/152 (51%), Gaps = 17/152 (11%)
Query: 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFD 2280
+ R +SHP P++L G+ + + ++E+G + + N + I+ ++F+
Sbjct: 2732 NVRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQITCFR--SGGN-------SRITRMRFN 2782
Query: 2281 HYGHRFASAALDGTVCTWQLE-----VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIA 2335
+ G++F DG + +Q V G S +P + C + A D +++SS S+IA
Sbjct: 2783 YQGNKFGIVDADGYLSLYQTNWKCCPVTG-SMPKPYLAWQCHNKTANDFVFVSSS-SLIA 2840
Query: 2336 AAGHSSNGINVVVWDTLAPPTSSRA-SITCHE 2366
AG SS+ N+ +WDTL P +S + TCH+
Sbjct: 2841 TAGLSSDNRNICLWDTLVAPANSLVHAFTCHD 2872
Score = 39.3 bits (90), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 228 SDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCE 284
S G+ ++ + L HP+ V+ WR T ++ P + S +VLLTCC D RLW E
Sbjct: 215 SQGEIDFSFVYLAHPRAVNGFSWR-KTSKYMP---RASVCNVLLTCCKDNVCRLWVE 267
>sp|Q8TDJ6|DMXL2_HUMAN DmX-like protein 2 OS=Homo sapiens GN=DMXL2 PE=1 SV=2
Length = 3036
Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/400 (30%), Positives = 185/400 (46%), Gaps = 58/400 (14%)
Query: 1134 LAGVTDAEKMEILAVVDLL----NEFDNKH--SASVYENLDEPGQRFWVELRFQLLCFFR 1187
L G+T E+M ++A+ D + E D S S + LDE G R+ + +R C
Sbjct: 1523 LPGLTRLEQMFLVALADTVATTSTELDESRDKSCSGRDTLDECGLRYLLAMRLHT-CLLT 1581
Query: 1188 RFGKLVSAEEL--AVDSRLIAWAFHSECQETLFG---SILPNEPTWPEMRALGVGFWYTD 1242
L + L V + AWAFHSE +E L +I +P W E+RA+G+G+W +
Sbjct: 1582 SLPPLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRN 1641
Query: 1243 VTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRN 1302
+ LR +EK+A+ + + D D AL Y+++ + V+ GLF+ DEK + F S N
Sbjct: 1642 INTLRRCIEKVAKASFQRNNDALDAALFYLSMKKKAVVWGLFRSQHDEK---MTTFFSHN 1698
Query: 1303 FQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLV 1362
F E++ + AALKNA+ LLG+ + E + AFFLL G A+ VC + D+QLA+VI RL
Sbjct: 1699 FNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLY 1758
Query: 1363 EKHGGPLERNLVTKFILPSSI--------------ERGDYWLTSLLEWELGNYSQSFLTM 1408
E E + IL I D +L SL W + +Y+++ T+
Sbjct: 1759 ESE---FETSSTYISILNQKILGCQKDGSGFSCKRLHPDPFLRSLAYWVMKDYTRALDTL 1815
Query: 1409 LGFQSTAVINNFAL---SSNSVAF-----------------MDPSIGLYCLMLANKNSMR 1448
L Q+ + + S N VAF P L L L + +
Sbjct: 1816 LE-QTPKEDDEHQVIIKSCNPVAFSFYNYLRTHPLLIRRNLASPEGTLATLGLKTEKNFV 1874
Query: 1449 NAIGEKNAAILGRWAALMRATALNRCGLPLEALDCLSSSP 1488
+ I ++ R A A + G P+ AL+ LS P
Sbjct: 1875 DKIN-----LIERKLFFTTANAHFKVGCPVLALEVLSKIP 1909
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 12/147 (8%)
Query: 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFD 2280
+ + +SHP+ ++L G+ + + ++E+ + + + A N A ++ L F+
Sbjct: 2765 NVKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFR--QAGN-------ARVTRLYFN 2815
Query: 2281 HYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS 2340
G++ A +G + WQ+ SN +P S C S D ++ITSS S++A +GHS
Sbjct: 2816 SQGNKCGVADGEGFLSIWQVNQTA-SNPKPYMSWQCHSKATSDFAFITSS-SLVATSGHS 2873
Query: 2341 SNGINVVVWDTLAPPTSSRA-SITCHE 2366
++ NV +WDTL P +S TCH+
Sbjct: 2874 NDNRNVCLWDTLISPGNSLIHGFTCHD 2900
Score = 35.8 bits (81), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 239 LCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCE 284
L HP+ V+ WR +++ G S +VLLT C DG RLW E
Sbjct: 229 LAHPRAVTGFSWRKTSKYMPRG----SVCNVLLTSCHDGVCRLWAE 270
>sp|Q9Y485|DMXL1_HUMAN DmX-like protein 1 OS=Homo sapiens GN=DMXL1 PE=1 SV=3
Length = 3027
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 184/403 (45%), Gaps = 54/403 (13%)
Query: 1134 LAGVTDAEKMEILAVVDLLNEF-----DNKHSASVYENLDEPGQRFWVELRFQLLCFFRR 1188
L G++ E+M ++A+ D + +++ + E LDE G +F + +R
Sbjct: 1498 LPGLSRMEQMSLMALADTIATTSTDIGESRDRSQGGETLDECGLKFLLAVRLHTFLTTSL 1557
Query: 1189 FGKLVSAEELAVDSRLIAWAFHSECQETLFGSILP----NEPTWPEMRALGVGFWYTDVT 1244
+ + AWAFHS +E L ++LP ++PTW E+RA+GVG+W +
Sbjct: 1558 PAYRAQLLHQGLSTSHFAWAFHSVAEEELL-NMLPAMQKDDPTWSELRAMGVGWWVRNTR 1616
Query: 1245 QLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQ 1304
LR +EK+A+ + +K DP D A+ Y+A+ + V+ GL++ EK+ + F NF+
Sbjct: 1617 ILRKCIEKVAKAAFYRKNDPLDAAIFYLAMKKKAVIWGLYRA---EKNTRMTQFFGHNFE 1673
Query: 1305 EEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEK 1364
+E+ + AALKNA+ LLG+ + E + AFFLL G A+ VC L D+QLALVI RL E
Sbjct: 1674 DERWRKAALKNAFSLLGKQRFEHSAAFFLLAGCLRDAIEVCLEKLNDIQLALVIARLYES 1733
Query: 1365 HGGPLERNLVTKFILPSSI----------------ERGDYWLTSLLEWELGNYSQSFLTM 1408
+ + K IL + D +L S+ W L +YS + T+
Sbjct: 1734 E---FDTSAAYKSILRKKVLGIDSPVSELCSLNINMHHDPFLRSMAYWILEDYSGALETL 1790
Query: 1409 LGFQSTAVINNFALSSNSVAFMDPSIGLYCLMLANKNSMRNAIGEKNA-----AILG--- 1460
+ + +SN F Y + + +R G + ++ G
Sbjct: 1791 IKQPIRENDDQVLSASNPTVF-----NFYNYLRTHPLLLRRHFGSSDTFSTHMSLTGKSG 1845
Query: 1461 ---------RWAALMRATALNRCGLPLEALDCLSSSPSTIGGT 1494
R A+A + G P+ AL+ LS P I T
Sbjct: 1846 LAGTINLSERRLFFTTASAHLKAGCPMLALEVLSKMPKVIKKT 1888
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 17/152 (11%)
Query: 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFD 2280
+ R +SHP P++L G+ + + ++E+G + + N + ++ ++F+
Sbjct: 2746 NVRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQITCFR--SGGN-------SRVTRMRFN 2796
Query: 2281 HYGHRFASAALDGTVCTWQLE-----VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIA 2335
+ G++F DG + +Q V G S +P + C + A D +++SS S+IA
Sbjct: 2797 YQGNKFGIVDADGYLSLYQTNWKCCPVTG-SMPKPYLTWQCHNKTANDFVFVSSS-SLIA 2854
Query: 2336 AAGHSSNGINVVVWDTLAPPTSSRA-SITCHE 2366
AG S++ NV +WDTL P +S + TCH+
Sbjct: 2855 TAGLSTDNRNVCLWDTLVAPANSLVHAFTCHD 2886
Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 228 SDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCE 284
S G+ ++ + L HP+ V+ WR T ++ P + S +VLLTCC D RLW E
Sbjct: 217 SQGEIDFSFVYLAHPRAVNGFSWR-KTSKYMP---RASVCNVLLTCCKDNVCRLWVE 269
>sp|Q8BPN8|DMXL2_MOUSE DmX-like protein 2 OS=Mus musculus GN=Dmxl2 PE=1 SV=3
Length = 3032
Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 152/301 (50%), Gaps = 32/301 (10%)
Query: 1134 LAGVTDAEKMEILAVVDLL----NEFDNKHSA--SVYENLDEPGQRFWVELRFQLLCFFR 1187
L G+T E+M ++A+ D + E D S + LDE G R+ + +R C
Sbjct: 1522 LPGLTRLEQMFLVALADTVATTSTELDENRDKNYSGRDTLDECGLRYLLAMRLHT-CLLT 1580
Query: 1188 RFGKLVSAEEL--AVDSRLIAWAFHSECQETLFG---SILPNEPTWPEMRALGVGFWYTD 1242
L + L V + AWAFHSE +E L +I +P W E+RA+G+G+W +
Sbjct: 1581 SLPPLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRN 1640
Query: 1243 VTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRN 1302
V LR +EK+A+ + + + D AL Y+++ + V+ GLF+ DEK + F S N
Sbjct: 1641 VNTLRRCIEKVAKAAFQRNNEALDAALFYLSMKKKAVVWGLFRSQHDEK---MTTFFSHN 1697
Query: 1303 FQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLV 1362
F E++ + AALKNA+ LLG+ + E + AFFLL G A+ VC + D+QLA+VI RL
Sbjct: 1698 FNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLF 1757
Query: 1363 EKHGGPLERNLVTKFILPSSI--------------ERGDYWLTSLLEWELGNYSQSFLTM 1408
E E + IL I D +L SL W + +Y+++ T+
Sbjct: 1758 ESE---FETSSTYISILNQKILGCQKDGTGFDCKRLHPDPFLRSLAYWVVKDYTRALDTL 1814
Query: 1409 L 1409
L
Sbjct: 1815 L 1815
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 12/147 (8%)
Query: 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFD 2280
+ + +SHP+ ++L G+ + + ++E+ + + + A N A ++ L F+
Sbjct: 2761 NVKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFR--QAGN-------ARVTRLYFN 2811
Query: 2281 HYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS 2340
G++ A +G + WQ+ SN +P S C S D ++ITSS S++A +GHS
Sbjct: 2812 SQGNKCGVADGEGFLSIWQVNQTA-SNPKPYMSWQCHSKATSDFAFITSS-SLVATSGHS 2869
Query: 2341 SNGINVVVWDTLAPPTSSRA-SITCHE 2366
++ NV +WDTL P +S TCH+
Sbjct: 2870 NDNRNVCLWDTLISPGNSLIHGFTCHD 2896
Score = 35.8 bits (81), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 239 LCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCE 284
L HP+ V+ WR +++ G S +VLLT C DG RLW E
Sbjct: 229 LAHPRAVTGFSWRKTSKYMPRG----SVCNVLLTSCHDGVCRLWAE 270
>sp|P47104|RAV1_YEAST Regulator of V-ATPase in vacuolar membrane protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAV1 PE=1 SV=1
Length = 1357
Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 141/278 (50%), Gaps = 12/278 (4%)
Query: 1203 RLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLK-- 1260
R ++WA HS+ +E L SI + +W R + +W + L + E +A+ ++ K
Sbjct: 904 RDVSWALHSDNKEILLSSIDRHITSWNRAREYRIAYWIKE-QDLVKKFEDIAKYEFSKDD 962
Query: 1261 KKDPKDCALLYIALNRIQVLAGLFK--ISKDEKDKPLVGFLSRNFQEEKNKAAALKNAYV 1318
K+DP CA+ Y+AL + Q+L L+K I E+ K +V F+S +F + + AALKNA+V
Sbjct: 963 KRDPSRCAIFYLALKKKQILLSLWKMAIGHPEQQK-MVRFISNDFTVPRWRTAALKNAFV 1021
Query: 1319 LLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNLVTKFI 1378
LL +H+ A FFLL V V + + D+ LA+ +CR+ E GP+ L+T +
Sbjct: 1022 LLSKHRYMDAAVFFLLTDSLKDCVNVLCKQVHDMDLAIGVCRVYEGDNGPVLGELLTAQM 1081
Query: 1379 LPSSIERGDYWLTSLLEWELGNYSQSFLTMLGF-----QSTAVINNFALSSNSVAFMDPS 1433
LP +I+ D W S + W+L + +L ++++++ + S DP+
Sbjct: 1082 LPETIKENDRWKASFIYWKLRKQEVAIKALLTAPIDLENNSSIVDKEVCVNRSFLVEDPA 1141
Query: 1434 IGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATAL 1471
+ L N+N ++ IG N ++R T +
Sbjct: 1142 LLYLYNHLRNRN-LKYFIGSLNVEAKIECTLILRVTDI 1178
>sp|Q9Y817|RAV1_SCHPO Regulator of V-ATPase in vacuolar membrane protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rav1 PE=1 SV=1
Length = 1297
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 142/271 (52%), Gaps = 19/271 (7%)
Query: 1128 LQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFR 1187
L V ++ +T + + +L +++ N+ + ++ ++LD G+R+ + L +L +
Sbjct: 865 LLKVKKVKTLTRSSQFLLLNLIEAFNK-----ARALRDSLDLNGKRYCIMLNQYVLSKHQ 919
Query: 1188 RFGKLVSAEELAVDSRLIAWAFHSECQETLFGSI--LPNEPT-WPEMRALGVGFWYTDVT 1244
R + ++ +R +AWAFHS + L L +P W + + FW +
Sbjct: 920 R-------QLTSLPTREMAWAFHSSNKAVLLDHTKKLHGKPLLWNAVEEYAIPFWLNE-Q 971
Query: 1245 QLRTRMEKLARLQY--LKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKP-LVGFLSR 1301
L+ +L+R Y + ++P++ +L +IAL++I V L++++ K+ V LS
Sbjct: 972 LLKDVFLELSRNHYAEIDDRNPENVSLYHIALHKINVFRDLWRLASWHKESARTVKLLSN 1031
Query: 1302 NFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRL 1361
+F ++K K A KNA+ LL +H+ A AFFLL A VC RNL + LA+ + R+
Sbjct: 1032 DFSKKKWKVVASKNAFALLSKHRYFYASAFFLLADSCYDAAKVCIRNLKSISLAIAMTRV 1091
Query: 1362 VEKHGGPLERNLVTKFILPSSIERGDYWLTS 1392
E GP + L+ +++LP ++ + D WLT+
Sbjct: 1092 YEGDDGPTLKRLINEYVLPLAVSQNDRWLTN 1122
>sp|Q03897|WDR59_YEAST Maintenance of telomere capping protein 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MTC5 PE=1 SV=1
Length = 1148
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 2206 DFEDYVDPPATVENIS-----TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVL 2260
D +D PP + +I+ +S HP +P+++V +SN +W K + A VL
Sbjct: 51 DLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVL 110
Query: 2261 PAANVPPPYALASISALQFD-HYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS 2319
+ +I+ + F+ + A+ ++D V W + RS RP S + S
Sbjct: 111 HGHS-------RAITDINFNPQHPDVLATCSVDTYVHAWDM----RSPHRPFYSTSSWRS 159
Query: 2320 HAMDVSYITSSGSVIAAAGHSSNGINVVVWD 2350
A V + +V+A SS+G ++ VWD
Sbjct: 160 AASQVKWNYKDPNVLA----SSHGNDIFVWD 186
>sp|Q9Y6I7|WSB1_HUMAN WD repeat and SOCS box-containing protein 1 OS=Homo sapiens GN=WSB1
PE=1 SV=1
Length = 421
Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 29/158 (18%)
Query: 2237 GSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALAS-------ISALQFDHYGHRFASA 2289
S +T +Y+W+ +G L PPP + + + ++ F H G AS
Sbjct: 274 ASYDTRVYIWDPHNGDILMEFGHL----FPPPTPIFAGGANDRWVRSVSFSHDGLHVASL 329
Query: 2290 ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349
A D V W+++ V P+ + LC + ++ GSV+AA H +V W
Sbjct: 330 ADDKMVRFWRIDEDYPVQVAPLSNGLCCA--------FSTDGSVLAAGTHDG---SVYFW 378
Query: 2350 DTLAPPTS-------SRASITCHEGLYDLFLPLKLLNF 2380
T S S + + + +L +P KLL F
Sbjct: 379 ATPRQVPSLQHLCRMSIRRVMPTQEVQELPIPSKLLEF 416
>sp|A5ABH4|RGLB_ASPNC Probable rhamnogalacturonate lyase B OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=rglB PE=3 SV=1
Length = 706
Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 1745 HFASAWLQRDSKGLLQVLQPVLITYTNGHTPYEVDMNNLKTFFHQSAELLTRNTSIDNMV 1804
HF W RD + L + Y N TPY ++ +T F + EL T +S +
Sbjct: 119 HFQQYWFLRDGETGLHTFS--RLAYYNETTPYLRNLQEFRTLFRPNTELWTHLSSSEVQT 176
Query: 1805 GDLQVSKFVDDE----RSTDLMNSIPEDERW 1831
L K V++E +T N+ P DE +
Sbjct: 177 APLPSKKAVEEEVVVQDATWTFNNTPTDEYY 207
>sp|Q91WQ5|TAF5L_MOUSE TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2
SV=1
Length = 589
Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 732 CSKIPPYT--MATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGR 789
C K P + +ATG +D ++RLW ++ G S V + H+GPV ++S + G+
Sbjct: 431 CVKFHPNSNYLATGSTDKTVRLWSAQQGNS---------VRLFTGHRGPVLSLSFSPNGK 481
Query: 790 KIATV 794
+A+
Sbjct: 482 YLASA 486
>sp|P38538|SLAPH_BRECH Surface layer protein OS=Brevibacillus choshinensis PE=1 SV=1
Length = 1116
Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 2107 VFFNLEDEIPLHDQLKYIWADADWPQNGWAGSESTPVPTFVSPGVGLGSNKGAHLGLGGA 2166
+ N+ DE L LK D DW S+ P+ T V P +GLGS K + L G
Sbjct: 232 IRLNVTDETLLTKYLKVTVRDMDWAHEKGNNSDELPLVTNV-PAIGLGSLKANEVTLNGK 290
Query: 2167 TIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWETQDDFEDYV 2211
+GS + T +A GI A G W +DD E+ +
Sbjct: 291 DADLGS------NTTYKVAEGINPNAFDGQKVQVW-IKDDRENVI 328
>sp|O75529|TAF5L_HUMAN TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1
SV=1
Length = 589
Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 732 CSKIPPYT--MATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGR 789
C K P + +ATG +D ++RLW ++ G S V + H+GPV +++ + G+
Sbjct: 431 CVKFHPNSNYLATGSTDKTVRLWSAQQGNS---------VRLFTGHRGPVLSLAFSPNGK 481
Query: 790 KIATV 794
+A+
Sbjct: 482 YLASA 486
>sp|Q9VU65|POC1_DROME POC1 centriolar protein homolog OS=Drosophila melanogaster GN=Poc1
PE=2 SV=1
Length = 391
Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 2274 ISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYI--TSSG 2331
I+ L+F G + A+++ D TV W L R C+ F+SH+ V+ + + G
Sbjct: 21 ITQLRFGPDGAQIATSSTDSTVILWNLNQAAR--------CIRFASHSAPVNGVAWSPKG 72
Query: 2332 SVIAAAGHSSNGINVVVWD 2350
+++A+AGH V +W+
Sbjct: 73 NLVASAGHDR---TVKIWE 88
>sp|B3RQN1|WDR12_TRIAD Ribosome biogenesis protein WDR12 homolog OS=Trichoplax adhaerens
GN=TRIADDRAFT_55049 PE=3 SV=2
Length = 432
Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 739 TMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGRKIATVSAAS 798
T+ T DG+LRLW +G S C+ E G H V+A+++ KI +VS+
Sbjct: 167 TIVTASQDGTLRLWEWAIGTKSVECLC-ECKG----HTQAVNAVTVNQSKTKICSVSSDK 221
Query: 799 HSNAVSNVRIWESVC 813
++IW + C
Sbjct: 222 M------IKIWSTDC 230
>sp|A5DL92|YTM1_PICGU Ribosome biogenesis protein YTM1 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=YTM1 PE=3 SV=2
Length = 453
Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 735 IPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGRKIATV 794
I P + + +D SLRLW+++L G + +L H+GPV +++ KI +
Sbjct: 179 ISPTRIVSAGNDHSLRLWKTKLAGVEEGAEDGKTTAILEGHKGPVVDLAVDYKSNKI--I 236
Query: 795 SAASHS 800
SA + S
Sbjct: 237 SAGNDS 242
>sp|O54927|WSB1_MOUSE WD repeat and SOCS box-containing protein 1 OS=Mus musculus GN=Wsb1
PE=1 SV=1
Length = 421
Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 14/126 (11%)
Query: 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALAS---ISALQFDHYGHR 2285
P S +T +Y+W+ +G L + P A+ + A+ F H G
Sbjct: 266 PDGALLATASYDTRVYVWDPHNGDLLMEFGHLFPSPTPIFAGGANDRWVRAVSFSHDGLH 325
Query: 2286 FASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGIN 2345
AS A D V W+++ V P+ + LC + ++ GSV+AA H +
Sbjct: 326 VASLADDKMVRFWRIDEDCPVQVAPLSNGLCCA--------FSTDGSVLAAGTHDG---S 374
Query: 2346 VVVWDT 2351
V W T
Sbjct: 375 VYFWAT 380
>sp|P49846|TAF5_DROME Transcription initiation factor TFIID subunit 5 OS=Drosophila
melanogaster GN=Taf5 PE=1 SV=1
Length = 704
Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 2228 HPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA 2287
HP + GSS+ + LW D T L + S+S+L F G A
Sbjct: 543 HPNSNYVATGSSDRTVRLW----DNMTGQSVRLMTGHK------GSVSSLAFSACGRYLA 592
Query: 2288 SAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347
S ++D + W L SN + + L +S +++ + G+V+AAAG + N+
Sbjct: 593 SGSVDHNIIIWDL-----SNGSLVTTLLRHTSTVTTITF-SRDGTVLAAAGLDN---NLT 643
Query: 2348 VWD 2350
+WD
Sbjct: 644 LWD 646
Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 21/121 (17%)
Query: 732 CSKIPPYT--MATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGR 789
C + P + +ATG SD ++RLW + G S V ++ H+G VS+++ + GR
Sbjct: 539 CVQFHPNSNYVATGSSDRTVRLWDNMTGQS---------VRLMTGHKGSVSSLAFSACGR 589
Query: 790 KIATVSAASHSNAVSNVRIWE----SVCVTELGSFVLEDTLSFDTNIVAVNWLTLENGQS 845
+A+ S N+ IW+ S+ T L T++F + + L+N +
Sbjct: 590 YLASGSVD------HNIIIWDLSNGSLVTTLLRHTSTVTTITFSRDGTVLAAAGLDNNLT 643
Query: 846 L 846
L
Sbjct: 644 L 644
>sp|P06546|SLAPM_BREBN Middle cell wall protein OS=Brevibacillus brevis (strain 47 / JCM
6285 / NBRC 100599) GN=BBR47_54160 PE=4 SV=4
Length = 1053
Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 2114 EIPLHDQLKYIWADADWPQNGWAGSESTPVPTFVSPGVGLGSNKGAHLGLGGATIGVGSL 2173
E L LK D +W Q SE P+ T V P +GLG K + L G G+G+
Sbjct: 211 ETLLTKYLKVTVRDMEWAQEAGNDSEDLPLVTNV-PAIGLGKIKANEVTLNGKDAGIGN- 268
Query: 2174 ARPGRDLTGGLAFGIPGYAGIGASALGWETQDDFEDYV 2211
T +A GI G W +DD ED +
Sbjct: 269 ------TTYKVADGINANDFDGQHVQVW-IKDDKEDVI 299
>sp|O74319|TAF73_SCHPO Transcription initiation factor TFIID subunit taf73
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf73 PE=1 SV=1
Length = 642
Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 21/101 (20%)
Query: 740 MATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGRKIATVSAASH 799
+ATG SD + R+W GG+ V + AH PVSA+ ++ G +A+ +
Sbjct: 502 LATGSSDHTTRMWDVRTGGT---------VRVFNAHHSPVSALCMSADGLSLASADESGI 552
Query: 800 SNAVSNVRIW------ESVCVTELGSFVLEDTLSFDTNIVA 834
+++W + V + S V + S+D I+
Sbjct: 553 ------IKVWDLRSSNQHVSFVKHSSIVYSLSFSYDNKILV 587
>sp|B4LJT7|CIAO1_DROVI Probable cytosolic iron-sulfur protein assembly protein Ciao1
OS=Drosophila virilis GN=Ciao1 PE=3 SV=1
Length = 331
Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 85/222 (38%), Gaps = 51/222 (22%)
Query: 84 FRQVFALSDNSLPVTSISWSPETPSIGQLAAASENCIFVFAHDSASSKGSFCWSQNAILV 143
F L+ +S V + W P + +A+ +N I +FA + S W A L
Sbjct: 134 FECAAVLNAHSQDVKRVVWHPTKEVLA--SASYDNTIKMFAESALDSD----WDCTATLS 187
Query: 144 QGTK-VEAIEWTGSGDGIVAGGMETVL--WK-------------KKNTLWEIAWKFKENY 187
T V +I++ G+ +V+ + L W+ K T+W+ +
Sbjct: 188 SHTSTVWSIDFDADGERLVSCSDDATLKIWRAYHPGNDAGIATPDKTTVWKCVCTLSGEH 247
Query: 188 PQNLVSATWSIE-GPSATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLEL------C 240
+ + +W + G A+A + G +F CSD K + EL
Sbjct: 248 SRAIYDVSWCKQTGLIASACG----------DDGIRIFKECSDSKRDAPTFELLTAEESA 297
Query: 241 HPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLW 282
H Q V+ V+W P T L++C DGT+++W
Sbjct: 298 HEQDVNAVEWNPVTAGQ------------LISCSDDGTIKIW 327
>sp|Q6P1V3|WSB1_XENTR WD repeat and SOCS box-containing protein 1 OS=Xenopus tropicalis
GN=wsb1 PE=2 SV=1
Length = 422
Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 19/122 (15%)
Query: 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALAS-------ISALQFDH 2281
P S +T +Y+W+ +G L PPP + + + ++ F H
Sbjct: 266 PDGALLATASYDTRVYVWDPHIGSILFEFGHL----FPPPTPIFAGGDNGRWVKSVSFSH 321
Query: 2282 YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS 2341
G AS A D V W+++ V P+ LC + ++ GSV+AA
Sbjct: 322 DGVHIASLADDNLVRFWRIDKSYPVEVAPLSKGLCCA--------FSTDGSVLAAGTQDG 373
Query: 2342 NG 2343
N
Sbjct: 374 NA 375
>sp|Q9ZCB8|HEM1_RICPR 5-aminolevulinate synthase OS=Rickettsia prowazekii (strain Madrid E)
GN=hemA PE=3 SV=1
Length = 414
Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 86/215 (40%), Gaps = 32/215 (14%)
Query: 1513 KPSAATGSSNWLLRDVALHLESCAKLDLSLQYFSKLIRDHPSWPDLGFGRASK-CFMDFE 1571
K +A +S ++ D L S AK+ + +FS + + RA K + +
Sbjct: 102 KETALVFTSGFVANDTTL--ASLAKIIPDIVFFSDELNHASIIAGIKSSRAEKYVYRHLD 159
Query: 1572 IHQYEKLVQNFQQKLYTALAFFEQRFSMDSS-SLIAKILSLLCN-NGLLFIGYDLLHGYI 1629
+ EKL+Q+ + FE +SMD S I I++L N L FI D +H
Sbjct: 160 VQHLEKLLQSVDIN-KPKIIVFESAYSMDGFFSPIKDIINLAKKYNALTFI--DEVHTVG 216
Query: 1630 CQGKSQEKSSDTVDGLSLYFCQHKPLLKAAEDISIFLSR--------------FIAATSI 1675
GK S+ +D + L KA I +++ FI TS+
Sbjct: 217 LYGKQGGGISELLDCSNQIDIIQGTLAKAYGTIGGYITSNYNLIDAIRLTAPGFIFTTSL 276
Query: 1676 ----------TCSHLKSTNSENVRHHEVRSRWSNA 1700
+ HLK +N E ++H EV ++ N+
Sbjct: 277 PPVISTAATHSIRHLKESNEERIKHQEVVTKLKNS 311
>sp|O25582|HTPX_HELPY Protease HtpX homolog OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=htpX PE=3 SV=2
Length = 310
Score = 35.0 bits (79), Expect = 7.7, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 1730 LITPLFLLDLYEYYVHFASAWLQRDSKGLLQVLQPVLITYTNGHTPYEVDMNNLKTFFHQ 1789
L+ ++L EY +A+L D+K +++ LQ + YTN E+D N+ ++ +
Sbjct: 228 LLLQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYTNNDYK-EIDKNSTRSAAYL 286
Query: 1790 -SAELLTRNTSIDNMVGDLQ 1808
+AE+ + + SI N + L+
Sbjct: 287 FNAEMFSTHPSIKNRIQSLR 306
>sp|Q9ZKS4|HTPX_HELPJ Protease HtpX homolog OS=Helicobacter pylori (strain J99) GN=htpX
PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 7.7, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 1730 LITPLFLLDLYEYYVHFASAWLQRDSKGLLQVLQPVLITYTNGHTPYEVDMNNLKTFFHQ 1789
L+ ++L EY +A+L D+K +++ LQ + YTN E+D N+ ++ +
Sbjct: 228 LLLQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYTNNDYK-EIDKNSTRSAAYL 286
Query: 1790 -SAELLTRNTSIDNMVGDLQ 1808
+AE+ + + SI N + L+
Sbjct: 287 FNAEMFSTHPSIKNRIQSLR 306
>sp|Q12226|AYT1_YEAST Trichothecene 3-O-acetyltransferase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=AYT1 PE=3 SV=1
Length = 474
Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 72 PLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAAASENCIFVFAHDSASSK 131
P S EE LIG I + S+P+ +W P+T + ++ S N S SS
Sbjct: 196 PFSDEELLIGNIDKS------KSIPLFDETWEPDTTLVHEIVETSRNTSGEEKEQSCSSN 249
Query: 132 GSFCWSQ-NAILVQGTKVEAIEWTGSGDGIVAGG--METVLWK 171
++ + + +AI +Q ++ A++ SG V+ + +WK
Sbjct: 250 STWAYVEFSAISLQNLRILAMQTCTSGTKFVSTDDIVTAFIWK 292
>sp|Q68VS3|HEM1_RICTY 5-aminolevulinate synthase OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=hemA PE=3 SV=1
Length = 414
Score = 34.7 bits (78), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 86/215 (40%), Gaps = 32/215 (14%)
Query: 1513 KPSAATGSSNWLLRDVALHLESCAKLDLSLQYFSKLIRDHPSWPDLGFGRASK-CFMDFE 1571
K +A +S ++ D L S AK+ + +FS + + RA K + +
Sbjct: 102 KETALVFTSGFVANDTTL--ASLAKIIPDIVFFSDELNHASIIAGITSSRAEKYVYRHLD 159
Query: 1572 IHQYEKLVQNFQQKLYTALAFFEQRFSMDSS-SLIAKILSLLCN-NGLLFIGYDLLHGYI 1629
+ EKL+Q+ + FE +SMD S I I++L N L FI D +H
Sbjct: 160 VQHLEKLLQSVDIN-KPKIIVFESAYSMDGFFSPIKDIINLAKKYNALTFI--DEVHTVG 216
Query: 1630 CQGKSQEKSSDTVDGLSLYFCQHKPLLKAAEDISIFLSR--------------FIAATSI 1675
GK S+ +D + L KA I +++ FI TS+
Sbjct: 217 LYGKQGGGISELLDCSNQIDIIQGTLAKAYGTIGGYITSNYNLIDAIRLTAPGFIFTTSL 276
Query: 1676 ----------TCSHLKSTNSENVRHHEVRSRWSNA 1700
+ HLK +N E ++H EV ++ N+
Sbjct: 277 PPVISTAATHSIRHLKVSNEERIKHQEVVTKLKNS 311
>sp|Q9QXW2|FBXW5_MOUSE F-box/WD repeat-containing protein 5 OS=Mus musculus GN=Fbxw5 PE=1
SV=1
Length = 573
Score = 34.7 bits (78), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 2277 LQFDHYGHRFASAALDGTVCTWQ----LEVGGRSNVRPME-SCLCFSSHAMDVSYITSSG 2331
L F H G++FAS + D TV W + + +++RP S FS D S + +SG
Sbjct: 98 LSFSHSGYQFASCSKDCTVKIWNNDLTISLLHSADMRPYNWSYTQFSQFNQDDSLLLASG 157
Query: 2332 SVIAAAGHSSNGINVVVWDTLA 2353
+ SS I V+ D+ A
Sbjct: 158 VFLGPHNSSSGEIAVISLDSFA 179
>sp|Q4KLI9|FBXW5_RAT F-box/WD repeat-containing protein 5 OS=Rattus norvegicus GN=Fbxw5
PE=2 SV=1
Length = 569
Score = 34.7 bits (78), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 2277 LQFDHYGHRFASAALDGTVCTWQ----LEVGGRSNVRPME-SCLCFSSHAMDVSYITSSG 2331
L F H G++FAS + D TV W + + +++RP S FS D S + +SG
Sbjct: 98 LSFSHSGYQFASCSKDCTVKIWNNDLTISLLHSADMRPYNWSYTQFSQFNQDDSLLLASG 157
Query: 2332 SVIAAAGHSSNGINVVVWDTLA 2353
+ SS I V+ D+ A
Sbjct: 158 VFLGPHNSSSGEIAVISLDSFA 179
>sp|B5X212|CIO1B_SALSA Probable cytosolic iron-sulfur protein assembly protein ciao1-B
OS=Salmo salar GN=ciao1b PE=2 SV=1
Length = 333
Score = 34.7 bits (78), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 2272 ASISALQFDHYGHRFASAALDGTVCTWQ--LEVGGRSNVRPMESCLCFSS-----HAMDV 2324
+++ L FD G R AS + D TV W+ GG+ C+C S D+
Sbjct: 195 STVWGLTFDPSGQRLASCSDDCTVKIWKECQPEGGQEGTDAAWKCVCTLSGFHGRTVYDI 254
Query: 2325 SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH 2365
++ +G++ A G +G+ V D A P S++ H
Sbjct: 255 AWCPLTGALATACG--DDGVRVFKEDETADPDQPAFSLSAH 293
>sp|P93107|PF20_CHLRE Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas
reinhardtii GN=PF20 PE=2 SV=1
Length = 606
Score = 34.7 bits (78), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 2228 HPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA 2287
HP G ++ + +W+F K + T+ A I +++F H G A
Sbjct: 377 HPAGTCLASGGGDSAVKIWDFEKQRCVTTFTDHKQA----------IWSVRFHHLGEVVA 426
Query: 2288 SAALDGTVCTWQLEVG 2303
S +LD TV W L G
Sbjct: 427 SGSLDHTVRLWDLPAG 442
>sp|Q6FLI3|CAF4_CANGA CCR4-associated factor 4 homolog OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CAF4 PE=3 SV=1
Length = 579
Score = 34.7 bits (78), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 31/127 (24%)
Query: 740 MATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGRKIATVSAASH 799
+ TG DG + LW +G +VG L H+GP++++ G ++ T S
Sbjct: 448 LVTGTKDGIVYLWDLRIG---------RVVGSLEGHRGPITSLKYM--GSELITGSMDKS 496
Query: 800 SNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVNWLTLENGQSLLGVCLQNE-LKVY 858
+ RIW+ +GS + + LSF+ +V+V E Q+ L L+ E +K+Y
Sbjct: 497 T------RIWD----LRMGS--VAELLSFEKEVVSV-----EESQTQLINALEGEPVKIY 539
Query: 859 --AQRHY 863
+R Y
Sbjct: 540 DRGERQY 546
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 908,620,355
Number of Sequences: 539616
Number of extensions: 39031175
Number of successful extensions: 87750
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 87547
Number of HSP's gapped (non-prelim): 266
length of query: 2389
length of database: 191,569,459
effective HSP length: 134
effective length of query: 2255
effective length of database: 119,260,915
effective search space: 268933363325
effective search space used: 268933363325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 70 (31.6 bits)