Query 000081
Match_columns 2362
No_of_seqs 211 out of 288
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 17:10:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5103 CDC39 Cell division co 100.0 3E-275 6E-280 2507.8 103.5 1862 6-2347 25-1930(2005)
2 KOG1831 Negative regulator of 100.0 7E-269 2E-273 2513.2 89.6 1411 532-2350 82-1519(1591)
3 PF04054 Not1: CCR4-Not comple 100.0 8.3E-92 1.8E-96 861.6 24.1 313 2025-2347 1-326 (379)
4 PF12842 DUF3819: Domain of un 100.0 2.7E-46 5.8E-51 406.1 17.7 145 1308-1452 1-147 (147)
5 KOG1831 Negative regulator of 97.0 1.2 2.6E-05 62.6 35.1 294 1010-1436 658-952 (1591)
6 smart00543 MIF4G Middle domain 91.8 1.4 3E-05 50.9 11.9 180 972-1162 2-196 (200)
7 KOG1467 Translation initiation 82.3 4 8.7E-05 52.6 8.4 113 1335-1451 255-387 (556)
8 PF02854 MIF4G: MIF4G domain; 81.1 5.2 0.00011 46.1 8.5 108 973-1081 3-117 (209)
9 PF02847 MA3: MA3 domain; Int 41.3 1.7E+02 0.0036 31.0 9.7 71 686-765 17-87 (113)
10 COG5088 SOH1 Rad5p-binding pro 35.8 81 0.0018 33.2 5.7 89 984-1077 15-108 (114)
11 cd00686 Terpene_cyclase_cis_tr 30.0 75 0.0016 40.5 5.3 73 2076-2167 113-199 (357)
12 PF08542 Rep_fac_C: Replicatio 26.9 1.4E+02 0.003 30.3 5.9 62 7-71 3-64 (89)
13 smart00544 MA3 Domain in DAP-5 23.3 3.6E+02 0.0078 28.6 8.5 71 686-765 17-87 (113)
No 1
>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
Probab=100.00 E-value=2.6e-275 Score=2507.76 Aligned_cols=1862 Identities=26% Similarity=0.386 Sum_probs=1440.4
Q ss_pred CCcHHHHHHHHHhhhhhchHHHHHHHHHHHh-hccchhhHHHHhhhccc--ccCCCCCCCch---HHHHHHHHHHHhhcC
Q 000081 6 STVPSQIRFLLQSLNEANADSVFRELCQFIE-YGIEGSTMMLQTCMDHL--NLHGTGLKNPQ---LESVVASVFKYIMDK 79 (2362)
Q Consensus 6 ~~~~~qi~~l~~~~~~~n~~~~~~el~~~~~-~g~~~~~~~l~~~~~~~--~~~~~~~k~~~---~~~ll~~~~~~~l~k 79 (2362)
+.+-+||.+|++.|++.||++.-+||.|+++ ..++--+|++|.++-.- +.-+ .+|.+. --.+|-+|++.++.|
T Consensus 25 sIV~AQI~fLlsTL~eDqydt~~eqIRqlinkna~~vY~~~~rRLiq~nS~~If~-tGK~~~~~a~~~~LL~Elks~~~K 103 (2005)
T COG5103 25 SIVKAQILFLLSTLREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQGNSYRIFG-TGKSSDGLATYKLLLDELKSLTKK 103 (2005)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHccCCcHHHHHHHHHHhcccchhhhc-cCcccchhHHHHHHHHHHHhhhhh
Confidence 4677999999999999999999999999997 88999999999999533 3222 244333 457888999999987
Q ss_pred CCccchhhhhccCcccCHHHHHHHHhhcCCCchhHHHHhhhhccCCChHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 000081 80 PNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQN 159 (2362)
Q Consensus 80 p~f~t~~c~A~~~~~~~~~~l~~l~~~L~ls~~q~v~~~lal~~s~n~~~~~~~~~f~~~~i~~l~~~~~~~~s~~~lh~ 159 (2362)
-. ..|+.+.. ++-|+++ ++ |..+||.++ .++...-.+. |+..+.+-++=-+
T Consensus 104 r~-----sD~Is~~d--sevFed~----~F----Q~siGlT~S-------------Ll~n~Fqs~~-Nq~~~~t~qqS~d 154 (2005)
T COG5103 104 RF-----SDAISGSD--SEVFEDF----HF----QFSIGLTTS-------------LLKNTFQSLL-NQLSDPTQQQSID 154 (2005)
T ss_pred hh-----hhHhhcch--hhhhcch----hh----hhhhhhhHH-------------HHHHHHHHHH-hhccchHhhhhcc
Confidence 54 66766641 2233333 11 111444443 2222222222 2211100000000
Q ss_pred H--HHHHhhcCchhH-hHHHHHHHHHhhcCCCCCCccccCCcCCcccccccccccccccCCCCcchHHHHHHhhccCcHH
Q 000081 160 I--IMFLQRSSDLSK-HVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMG 236 (2362)
Q Consensus 160 i--l~~l~~~~gl~~-~~~~f~~~l~~~~~~~~~~~~l~Pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ 236 (2362)
+ +-.|++ |-.. ...-|.+.+.-.--+. .|+ .. +.+.++.+- +. |+
T Consensus 155 ~NDld~lr~--~~Tdydr~~f~q~i~~~Le~s------~~~-------------~~-~~~p~e~~~-~~---------l~ 202 (2005)
T COG5103 155 KNDLDLLRE--GTTDYDRKIFRQEIKDVLEKS------DPL-------------TA-LFGPREVDR-SF---------LD 202 (2005)
T ss_pred cchHHHHhc--CCchHHHHHHHHHhHHHHHcC------Cch-------------hh-hcCcchhhH-HH---------HH
Confidence 0 000111 2110 0011222111110000 001 00 001011000 01 11
Q ss_pred HHHHhhCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccCCccCccchhhHhhhccCCCCCCCCCCCCCCHHHHH
Q 000081 237 DVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLV 316 (2362)
Q Consensus 237 ~~i~elG~~~t~s~~~c~~~L~~~~~l~e~~va~~lg~ma~t~sgl~d~~~~~~~~~~~~g~~~~~~~~~~~~wn~~vlv 316 (2362)
+. ..++|+-.+.-++.|||+.+-.|+. .++.+.||.-..+
T Consensus 203 ~~--------------l~~Il~P~~~~~~~dvar~il~~~~--------------------------~~D~~~w~~v~~~ 242 (2005)
T COG5103 203 DA--------------LQRILRPRREVVPEDVARAILFMAD--------------------------FPDRGEWNLVAIV 242 (2005)
T ss_pred HH--------------HHHHhCCCccCCcchHHHHHhhhhh--------------------------cccccccchHHHH
Confidence 11 2344553445888899998444432 2235679999999
Q ss_pred HHHHhhCCCCCHHHHHHhcCCCCCCCCChhhHHHHHHHHhh-hcCCCccccccccCcccCchh-hHHHHHHHhhCCCccc
Q 000081 317 KAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKY-ACQEPFPLHAVCGSVWKNTEG-QLSFLRYAVASPPEVF 394 (2362)
Q Consensus 317 ~alk~~~p~lnW~~Vi~~lD~~~f~i~d~~~l~ll~~~~~~-~~~~~fpi~~l~~~~W~N~~~-Qlsfl~~~l~~p~~~f 394 (2362)
.+++..+..+||.+|+.+||.+.|.|+.......++.+|-. +.+.+||.+.+| ..|||... |+++.-|..+.+...|
T Consensus 243 ~a~~s~~e~iNW~~v~s~f~~~~F~i~~l~p~~v~~~c~f~~~~~~~v~~eff~-~~Wkn~~~~~l~i~lhi~s~~~~~f 321 (2005)
T COG5103 243 GAMKSNLEEINWRDVYSCFLDVNFSIWTLEPLYVIIDCWFYISGIITVPYEFFF-KRWKNERAQILFIRLHIESDEKRTF 321 (2005)
T ss_pred HHHHhhhhhcCHHHHHHHhcCcceeeccCcchHHHHHHHHHHhcCCCccHHHHH-HHhcchhhhhHhhheeeeecccchh
Confidence 99999999999999999999999999977766666665555 456789999999 49999999 5666667777777778
Q ss_pred ccCc-CccccccccCCCCccccc-cccccccchHHHHHHHHHhhhcCchHHHHHHhhhhhhcChhHHHHHhhcc-----C
Q 000081 395 TFAH-SARQLPYVDAVPGLKLQS-GQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHI-----N 467 (2362)
Q Consensus 395 ~f~~-~~~~~~~~d~~~~~~~~~-~~~~~~W~sldl~e~L~~Lae~~~~~~v~~l~~~p~~~~pe~lllgl~~i-----~ 467 (2362)
+... .+.+.|..+...+.+... -...+++||.+|++++. +++.....-..++| +...||++..||..+ +
T Consensus 322 d~~Nv~~tr~Vs~~~~~~~~~~ny~~~~snlNc~el~Q~~~-l~~~p~i~y~~~lF---lN~~pE~~~a~L~~~~~~f~~ 397 (2005)
T COG5103 322 DYSNVFFTRIVSIEDSRGHRFKNYMGYESNLNCVELFQCIM-LGSLPLIEYIARLF---LNKSPEWCAAGLGFVQPKFSP 397 (2005)
T ss_pred eecccceeEEEeeecCchHHHHHHHHHhcccCHHHHHHHHH-hccchHHHHHHHHH---hccCHHHHHHHHHHhhhhhhh
Confidence 8754 344555544443333222 24789999999999994 44332222233466 789999999999754 4
Q ss_pred cchhHHHHHHHHHhhHHHHcC-CCchHHHHHHhhhCchhHHHHHHHhhhcCCccHHHHHHHHHHhhhHHHHhhcCCchhH
Q 000081 468 TAYNLIQYEVSFAVFPMIIKS-TMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFA 546 (2362)
Q Consensus 468 ~~~~~l~~ell~~lf~~fl~~-~~~~~vi~~lW~~~~~~~~~~l~d~y~~d~~~l~rIldvaqelk~L~~lL~~~pf~fa 546 (2362)
-.||+.+.+.....+-+++.| .++++|+..+.+.+|+++++...-...+|...++|++|+.-|+|.|+.+.|..|..|+
T Consensus 398 L~~N~v~~s~if~~ll~~f~n~~p~sFvfv~~~rT~p~~~~~~~r~v~~kd~~pv~~~l~~~le~~~l~~V~n~lP~~f~ 477 (2005)
T COG5103 398 LAWNPVQESRIFEELLMGFANGAPNSFVFVVLFRTHPEMMLQKSRLVLAKDGIPVSRLLDIFLEHKMLPLVSNLLPPEFC 477 (2005)
T ss_pred hhcCchHHHHHHHHHHHHHhcCCCCceEEEEEEecCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCchhhhhhcCCHHHH
Confidence 479999999888887777755 5889999999999999999999877799999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCHHHHHHHHhhcCcc-h----HHHHHHHHHHHHhhcccccccCCCCCCCccccccccchHHHHHHHH
Q 000081 547 IRLAVIASQKELVDLEKWLSINLSTYKD-V----FFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLL 621 (2362)
Q Consensus 547 idLA~lAsrre~L~LekWL~~~l~~~~~-~----F~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~~tv~~lL~~L 621 (2362)
+|+++|++.|+.++|..|+..++....+ + |+...++||+.|+.......+.+ ..+-+ ++..|+-.+|..+
T Consensus 478 ~~i~vL~~aR~~l~~~~Wl~~~~~~~~dad~~NVfvv~~~~~l~sk~s~~k~p~~q~---ee~~~--f~~~tvieil~t~ 552 (2005)
T COG5103 478 FDIIVLSSARDHLNLGIWLSNNLTTRKDADGLNVFVVSLVQYLDSKVSKHKEPEKQK---EESVM--FPLNTVIEILGTF 552 (2005)
T ss_pred HHHHHHHHHHHhcchhhhcccCceeeecCCcccchHHHHHHHHHHHHhhcCChhhhc---cccee--eehhhHHHHHHHh
Confidence 9999999999999999999999987665 3 99999999999997543211111 11223 3445655555544
Q ss_pred HhhhCCCCcHHHHHHHHHHHHHhhccCCCCCCCCC-CCC-----CCCCCChhhHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 000081 622 KAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEA-ADS-----STSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLA 695 (2362)
Q Consensus 622 ~~~~~~~~s~~l~e~l~~~~~~~i~~~PrL~n~~~-~d~-----~~~~~~~~dVE~Ean~yfqkmYs~eisI~~iV~~L~ 695 (2362)
..... +-.+.++.++..|++.||||++.+- +|+ .+.++++.|||+||++|||+||+++++|+++|+.||
T Consensus 553 ~~~V~-----q~~~~~k~~~~~~l~~fprli~~G~~~Ds~v~at~tt~s~~~dIE~E~~sy~q~~y~~~~~I~~~I~~l~ 627 (2005)
T COG5103 553 TKAVE-----QYIRILKPETVVVLNEFPRLIPHGLRRDSIVAATNTTRSKEIDIEEEASSYIQQIYNSQRGIESSINQLK 627 (2005)
T ss_pred HHHHH-----HHHHhcCcceEehHhhhhhhccCCCCcchhhhccCcccccCccHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 33221 1156778888899999999999874 454 356789999999999999999999999999999999
Q ss_pred HhhcCCCcccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCCCCCcccchH
Q 000081 696 RFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFG 775 (2362)
Q Consensus 696 r~K~S~~~rdqdvFaCMih~LFdEYrFF~~YP~~eL~~TAvLFG~lI~~~Lv~~~~L~iALr~ILeAlrkp~~SkMf~FG 775 (2362)
+|++|++|||+|+|+|+-|.|||||+||++||+++|++|||||||||+++|+++.+|++|+|||..++++|++||||+||
T Consensus 628 ~f~~senprd~elfsci~hal~~ey~ff~dyPl~ALaltavLfGslI~f~ll~~~~L~vA~ryI~~~lk~P~~skmf~Fg 707 (2005)
T COG5103 628 EFLRSENPRDKELFSCIFHALLEEYGFFYDYPLSALALTAVLFGSLIKFRLLPKPYLRVAIRYIKGSLKHPENSKMFSFG 707 (2005)
T ss_pred HHhhcCCcchHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCCchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCccCCcc
Q 000081 776 TKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVSGSGI 855 (2362)
Q Consensus 776 iqAL~qF~~RL~EwPqyC~~Ll~Ip~L~~t~p~l~~~ie~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 855 (2362)
+|||++|+.||++||+||+.++.||.|+. .|++|+.|-.+.. ..+. .+
T Consensus 708 ~qal~~Fq~kLp~Yp~yc~~vl~ip~l~~-r~~iy~sivem~s----~eNt-------~~-------------------- 755 (2005)
T COG5103 708 FQALEVFQEKLPSYPSYCSEVLEIPTLNN-RILIYKSIVEMDS----NENT-------EV-------------------- 755 (2005)
T ss_pred HHHHHHHHHhhhhhhHHHHHHhccccccc-chHHHHHHHHHHh----ccCC-------cc--------------------
Confidence 99999999999999999999999999965 9999998855442 1100 00
Q ss_pred cccccchhhhHHHhhhccccccccccccccCCCCCCCccccCCCCCcccCCCCCchhhhhccccCCccccccCCCccCCC
Q 000081 856 TQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPS 935 (2362)
Q Consensus 856 ~~~~~~~~~~~~~qq~~~g~l~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~ 935 (2362)
|+ +++++|. ++.- .|++-
T Consensus 756 ----------------------Ek-------a~p~~pm---~pl~-----------------------------~fv~~- 773 (2005)
T COG5103 756 ----------------------EK-------ANPTHPM---LPLE-----------------------------DFVRL- 773 (2005)
T ss_pred ----------------------cc-------cCCCCcc---cchh-----------------------------hhhee-
Confidence 00 0111111 1000 00000
Q ss_pred CCccccccccccchhHHHHHhhhcCCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHHhhhcc
Q 000081 936 RGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRAS 1015 (2362)
Q Consensus 936 ~~~~~~~~~~~~ni~tL~~a~e~~~~~~e~Ppe~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~YLV~kRas 1015 (2362)
.-+-+.+.|--++||..+|+|.+||++..|+..|++|+|+.|+|.|.+||+.|||.+|++
T Consensus 774 --------------------~v~c~~n~Eg~~~evV~~iLFaiNNl~~ln~n~ki~~lk~~Ltp~y~~wfs~y~vtqR~~ 833 (2005)
T COG5103 774 --------------------IVKCDANNEGRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVGWFSIYMVTQRST 833 (2005)
T ss_pred --------------------EeccccCccccHHHHHHHHHHHhhhHHhhhccchHHHHHHhcCcccccceeeEEEEeecc
Confidence 000012234556788888999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcchhhccChHHHHHHHHhhhhhhhhhhhcCcccccCCCChhhH
Q 000081 1016 IEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSL 1095 (2362)
Q Consensus 1016 iEPN~H~LYl~fLd~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~L 1095 (2362)
.|||||+||.++++.++++.||+.+.+.|.+.++.||+...- +.+|+++|||||||||+|||||||||+|+++|||++
T Consensus 834 ~e~n~~~ly~kvve~lgS~dly~~~~r~TL~~l~~ll~~~~e--s~~ekk~lKnLgswLG~ItLa~NkpIt~~q~~Fk~~ 911 (2005)
T COG5103 834 AEENCRRLYGKVVERLGSKDLYLRFSRKTLEFLKMLLDYRCE--SPSEKKVLKNLGSWLGRITLAKNKPITSEQFDFKKF 911 (2005)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhcccc--ChHHHHHHHHHHHHHhHHHHhhcCccccccccHHHH
Confidence 999999999999999999999999999999999999987643 889999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCccccccccc
Q 000081 1096 IIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSL 1175 (2362)
Q Consensus 1096 LlEaY~~g~Li~VIPFVcKVLe~~~~SkVFkPPNPWtm~IL~lL~Ely~~~~LKLnLKFEIEVL~K~L~ldl~dieps~~ 1175 (2362)
|+|||+.||+..|||||||||++++.|+||||||||+||||+||.|||+++++||+||||||+|+||||++++.|||++.
T Consensus 912 lve~~~~~Ri~~vvpFV~k~L~~as~s~IFkPpNPW~mgILkLL~El~~~a~~~l~lkFEie~Ll~~lnv~~~~ikPs~~ 991 (2005)
T COG5103 912 LVESVECRRILFVVPFVSKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLLRHLNVELVPIKPSKS 991 (2005)
T ss_pred HHHHhhcCceEEeehHHHHHHHhcccceEecCCCchHHHHHHHHHHHHhcCcceeehhhhHHHHHHhcceeeccCChhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhh---ccCCCCCCCCCcCCCCCcccCCCCcCccCCCCCCCCCCCcCCCCCCCCCcccccccccccccCcCcchhH
Q 000081 1176 LKDRKRE---IEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMED 1252 (2362)
Q Consensus 1176 L~~r~~~---~~~~~d~~~k~~~~~q~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 1252 (2362)
++++... +|. ..||- -+++ +.|.+ ..+++||.... .++.+ ++|
T Consensus 992 ~~n~~V~ks~LEk---------------e~~Ed------vL~a-~~~d~----------~~~~~qyi~~~-sSq~T-vtD 1037 (2005)
T COG5103 992 LGNHLVLKSRLEK---------------ELPED------VLNA-KFPDG----------TDYLAQYIIED-SSQIT-VTD 1037 (2005)
T ss_pred hCcHHHHHHHHhh---------------hchHH------HHhh-hcccc----------chHHHHHHHHh-hhcch-HHH
Confidence 9876531 110 11110 0110 11100 01233443100 00000 011
Q ss_pred HHHhhccCCCCCCccccccccCCCCCCCcccccccCCCCCCceEEecccccccccchhhhhhHHHHHHHHHHhhhhhcch
Q 000081 1253 EKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQ 1332 (2362)
Q Consensus 1253 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~~ip~l~~~v~i~~~l~~f~~~p~Lk~iv~~Ai~rAIrEII~PVVe 1332 (2362)
. ++.. ...| -|.+|++.++|++.+||||++.|||
T Consensus 1038 ~-va~~--------------------------------------~g~P-------~PaiK~~~Qlal~~SVrEI~~aVVe 1071 (2005)
T COG5103 1038 L-VARH--------------------------------------VGSP-------KPAIKNLTQLALDLSVREICGAVVE 1071 (2005)
T ss_pred H-HHHH--------------------------------------cCCC-------ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1110 1111 2899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 000081 1333 RSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLV 1412 (2362)
Q Consensus 1333 RSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTCkEPLr~si~~~Lr~ll~~~~~~~~~~Eq~i~~~ 1412 (2362)
||+.||++||+.|++||||||.|+.++..||++||++|||+||+|||+|||++.|.+++|++..++......+.+++..+
T Consensus 1072 ks~gIAi~Tt~~l~~KDFa~ev~~s~l~~aar~Mv~~La~~La~vT~~EPlk~~i~~n~rs~a~~l~sv~~~~ae~vd~~ 1151 (2005)
T COG5103 1072 KSCGIAIQTTMALFKKDFAMEVEKSMLYVAARNMVVNLAKFLALVTAQEPLKACISGNVRSYAMKLCSVLDFSAEKVDKI 1151 (2005)
T ss_pred HhccchhhHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhccHHHHHHHHhhhhhchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888776677788899999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcCcccccccccCCCCCCCCCCCCCCHhHHHHHH
Q 000081 1413 TNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYE 1491 (2362)
Q Consensus 1413 vnDNldLac~iIEKaA~EKAi~eIde~l~~~~~~RRkhre~-~~~~f~D~~~~~~~~~~LPepLrlkpggl~~~Q~~VYE 1491 (2362)
+++|++.||.+||+|+++|++++|+..|+.++..|||||++ ++.||+||+. +..+++||++|+++-||+||+|+++||
T Consensus 1152 ~~eN~~va~~lIe~a~~~k~~~~i~aei~h~Iv~R~~Hrktt~n~PFvd~aa-a~~slnLps~L~ls~~~~Tpqqf~lyE 1230 (2005)
T COG5103 1152 AMENQDVACRLIERAGVSKVSESISAEIEHMIVERVRHRKTTPNLPFVDPAA-ANLSLNLPSSLELSIGKATPQQFSLYE 1230 (2005)
T ss_pred HHhchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCccCccc-CccccCCCcccccccCCcCHHHhhhhh
Confidence 99999999999999999999999999999999999999998 7999999996 555789999999999999999999999
Q ss_pred hhhcCCCCcCCCCCCCccccCccCCCCchhhhhcccCCCCCCCCCCcCCCCCCCcccccCCccccCCCcccCcccccccc
Q 000081 1492 DFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTS 1571 (2362)
Q Consensus 1492 dF~r~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~ 1571 (2362)
||.|+|-..- .+|.+.++.-+ -...+++ ++++ -|.++. +..+.-..|
T Consensus 1231 ~fD~l~ls~i---~~h~~~~~~n~----------~~Td~ad---------stda-----l~~nl~------nt~e~eAnQ 1277 (2005)
T COG5103 1231 DFDRLSLSTI---MGHIEKIAINA----------IDTDSAD---------STDA-----LNNNLN------NTVENEANQ 1277 (2005)
T ss_pred cccccccccc---ccccchhhhhh----------hcCChhh---------hhhh-----hccccc------hhhhhHHHH
Confidence 9999763221 22222211110 0000000 0000 000000 000000000
Q ss_pred c-ccccCCCCCcccccccccccccCChhhhhhhccCCCCCCCCCCCCCCCCCCCchhhhccccccccccchhhhHHHHHH
Q 000081 1572 L-VHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHI 1650 (2362)
Q Consensus 1572 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ 1650 (2362)
+ +++.. . ... . +.+ ..+. ..++|.. .+..+. . +..|-
T Consensus 1278 ta~~yq~-n-----------~L~-i-~~q--l~Ql------------~~~~Py~-~~~~V~---------a----D~e~~ 1315 (2005)
T COG5103 1278 TALEYQE-N-----------LLI-I-KAQ--LVQL------------SKKIPYS-SKKNVI---------A----DEEHG 1315 (2005)
T ss_pred HHHHHHH-H-----------hhh-h-hhH--HHHh------------cccCCcc-hhhcCc---------c----hhhhh
Confidence 0 01000 0 000 0 000 0000 0011110 011110 0 11111
Q ss_pred HHHHHHHHhhcCCcchhhHHHhhhhHHHHHhhcChhHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHhHHHHHH
Q 000081 1651 VAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKE 1730 (2362)
Q Consensus 1651 ~~~~l~~l~~~~~~~~~i~~~i~~v~~~i~~~~~rde~al~~aqki~~~L~~~~~~~l~~ev~~~~L~~L~~~~~~~~ke 1730 (2362)
. +.+ +. +++..++.+|...|.++ |+.++.++|.+++.|+..+.+++++||+.++||+||++|-+++|+
T Consensus 1316 ~---lkE-----~~-NQ~~t~~~~Il~~Ia~s---d~~~l~c~q~c~~il~~~skSp~~~evls~~lEkic~~S~kt~k~ 1383 (2005)
T COG5103 1316 L---LKE-----GK-NQFETVFRRILESIASS---DDKDLECIQLCRYILGHLSKSPSKEEVLSRCLEKICKISFKTQKE 1383 (2005)
T ss_pred H---HHh-----hH-HHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHhHhHHHhhh
Confidence 1 111 11 35666777777777654 999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccccccCHHHHHHHHHhCCCChhHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCchh-hHhhHHHHHHHH
Q 000081 1731 LTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRV-VISELHNLVDAL 1809 (2362)
Q Consensus 1731 vt~wl~~~~d~rk~N~~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~e~~~-~~~df~~tleaL 1809 (2362)
|.||++|+.|.||||+|+|.+||++|||+..|||.+|++.|.+.. ..++|||+.|++.++.+|.++ +..||.+|+|.|
T Consensus 1384 V~~wl~ysnD~rKfnip~I~slie~nli~~~E~D~~l~r~i~~~~-gnvtdFai~Ll~~~V~~e~pi~~~~dFI~tLe~l 1462 (2005)
T COG5103 1384 VLGWLIYSNDPRKFNIPLIGSLIEHNLINVVEYDQALSRKIPLAD-GNVTDFAIALLASLVTAEVPICTVYDFICTLEML 1462 (2005)
T ss_pred hheeeeecCChhhcCcHHHHHHHHhccchhhhHHHHHHhhccccc-cchHHHHHHHHHHHhccCCceeeHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997544 458999999999888877665 559999999988
Q ss_pred HHHHcCCCChhHHHHHHHHHhCcccccCCCCCCccccchhhhhhcccccccCcccCcCCCCCCCCCCCCCCChHHHHHHH
Q 000081 1810 AKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSML 1889 (2362)
Q Consensus 1810 ~kl~~~~~~~~~l~~l~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~eq~~~l 1889 (2362)
+.-. + +.++++.+++.+... ..+..| ....+.||+..+
T Consensus 1463 a~s~----d-~~vk~f~~~~~~tm~---------------------~~v~kg----------------nKqq~ndqi~iV 1500 (2005)
T COG5103 1463 AGSS----D-PKVKDFFQKISNTMM---------------------HIVAKG----------------NKQQLNDQIIIV 1500 (2005)
T ss_pred hccC----C-hhHHHHHHHHHHhhh---------------------hccccc----------------ccccccceEEEe
Confidence 5432 2 455777766643100 000011 123567999999
Q ss_pred HHHHHHhhcCCCCCchHHHHHHHHHHHcCccCCCchhHHHHHHHHHHHHHHhhhccccCCCCCCCCCccccccchHhhHH
Q 000081 1890 FAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIY 1969 (2362)
Q Consensus 1890 F~EWv~l~~~~~~~~~~~~~Fi~qL~~~giL~~dd~~~~FfR~~~E~sV~~~~~~~~~~~g~~~~~s~~~~~~f~~IDA~ 1969 (2362)
|.|||++.++...+|..-..|+.||+++|+++.+|+...|||+.+|.+|..|.+.. +.+.+|..||||
T Consensus 1501 f~ewv~llrn~~~nD~v~~~F~~ql~e~g~~s~~~~~~~ffk~sle~~i~aF~e~~------------pta~~y~~IDal 1568 (2005)
T COG5103 1501 FSEWVELLRNCRFNDTVPEMFLPQLMERGDYSASLDIRSFFKVSLEHFIRAFHERI------------PTAYCYLKIDAL 1568 (2005)
T ss_pred eHHHHHHHHhcccccccHHHHHHHHHHccCCCchHHHHHHHHhhHHHHHHHHhhcC------------Ccccceeeccch
Confidence 99999999999999999999999999999999999999999999999999997432 247999999999
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHhhcCCCCCCCcchHHHHHHHH
Q 000081 1970 AKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFA 2049 (2362)
Q Consensus 1970 akLi~~lvk~~~~~~~~~k~~~L~kiLsiiv~vl~~dhe~~~~~FnQRpyfRlfs~LL~el~~~d~~l~~~~~~il~~fa 2049 (2362)
+.||+.++++. +..+.++..|++||++++++|+.++|..+++.||+|+||||||++|+||.......++.-..+.+.|-
T Consensus 1569 ~sLi~n~l~~e-G~te~T~s~~~~kii~~i~~VFae~h~~~~e~~h~~~fFrLfS~il~e~~dv~~~d~s~fv~~~Sv~y 1647 (2005)
T COG5103 1569 PSLIKNRLYEE-GSTEGTVSVLFRKIIKDILFVFAEAHRKRAEFVHNYLFFRLFSRILIETLDVIDEDTSCFVNNRSVVY 1647 (2005)
T ss_pred HHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhhhhhccchhhhhhHHHHH
Confidence 99999999996 44456777999999999999999999999999999999999999999997754344455567889999
Q ss_pred HHhhhcCCCCCCchHHHHhHhhhcccchhhhhcCCCCCChHHHHHHHHHHHHhhhhhccCCCCCchhhHhhHhHHHHHHH
Q 000081 2050 NAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLV 2129 (2362)
Q Consensus 2050 ~~l~~LqP~~~PgFaFaWLeLISHR~FmP~lL~~~~~kGW~~~~~LL~~LlkFl~p~Lr~~~ls~~i~~lYkGtLRiLLV 2129 (2362)
++|..|||.+||||+|||++|+|||+.+|++|+.|+.+||..|..+|+++|||+. ++...+...++.+|+|+||+.||
T Consensus 1648 ~~f~alqP~~fPgFtfawl~llSH~~llP~vL~v~Nd~~~d~f~~~lmsflKFlD--~s~~~v~~~~~~ly~Gflr~iLv 1725 (2005)
T COG5103 1648 SIFEALQPSRFPGFTFAWLELLSHKFLLPKVLLVNNDKINDLFSEGLMSFLKFLD--LSEEGVVLVMEALYCGFLRTILV 1725 (2005)
T ss_pred HHHHHcCcccCCchHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcchheeee
Confidence 9999999999999999999999999999999999999999999999999999998 88888889999999999999999
Q ss_pred hhcccchHHHHHhhhhhccCCCcccccccceecccCCCCCCCCCCCCCCCCCCCcCcCCCCccccchHHHHhhhhhhHHH
Q 000081 2130 LLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADV 2209 (2362)
Q Consensus 2130 LlHDFPEFL~eyH~~lCd~IP~~CiQLRNlILSAfPr~mrLPDPftpnLKvD~LpEi~~~P~I~~d~~~~L~~~~lk~~v 2209 (2362)
++||||-||+++||++...+|+.|+||||+||||||++|.+||||..||||.++|+|+..|.++.|+...|. ++++.+
T Consensus 1726 ~~hD~P~FLit~~yql~~~~P~e~vqlrNm~lSa~Psdlt~p~Pfa~~Lkv~~~P~~k~~p~~f~d~~v~le--~~~s~~ 1803 (2005)
T COG5103 1726 YLHDFPGFLITQIYQLFRRNPLECVQLRNMMLSAYPSDLTYPCPFAQGLKVQEYPHIKNFPNQFRDRIVPLE--GQNSFF 1803 (2005)
T ss_pred eeccCchHHHHHHHHHhhcCCHHHHHHHHHHHHhccccCcCCCchhcccccccChHhhhhhHHhcccccchh--hcccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999998874 799999
Q ss_pred HHHhccCCCCcchHHHHHHHccCCccccccCCcc---ccHhHHHHHHHHHHHHHHHhhhccCCcccccCCCCchhhhh-h
Q 000081 2210 DDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTR---YNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFL-V 2285 (2362)
Q Consensus 2210 D~yL~~r~~~~s~l~~l~~~L~~~~~e~~~~G~~---yN~~LiNAlVLyVG~~Ai~~~~~~~~~~~~~~~~~~~~~f~-~ 2285 (2362)
| | |.+.++.++...+++...-+.....|.. ++-..|-++|+|+|+.++.... + .|+ +
T Consensus 1804 d--L--e~~~~S~l~~~~s~~~~d~y~~k~t~~~~~~~dn~~~~~~V~h~~~es~~~~~-----~----------~f~~k 1864 (2005)
T COG5103 1804 D--L--EACLRSALQNRTSVKVTDLYIGKNTPLWVYLIDNLNEMDAVSHTVVESIKFMI-----E----------RFMHK 1864 (2005)
T ss_pred h--h--HHHhhhhhhHHHHHHHHHhhccccCceeeeeeccHHHHHHHHHHHhhhHHHHH-----H----------HHhcc
Confidence 9 6 6676788888777776554443333433 2457889999999999865311 1 344 3
Q ss_pred hhHHHHHHHHHHhcCcchhHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccc----hhhHHHHHHH
Q 000081 2286 SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEAN----QVRVSTAVYL 2347 (2362)
Q Consensus 2286 s~~~~i~~~L~~~Ld~EgRY~~lnAIaNQLRYPNsHThyFS~vlL~LF~e~~----~e~IqEqI~~ 2347 (2362)
|+.+.++..++..+++|.||.+|.||+|||||||+||+|||||+|++|.++. .=.||||||-
T Consensus 1865 s~~~t~l~~~~r~g~~~~rY~ll~ai~~qlRYp~ihTy~fs~vfl~~fkS~~~N~QkL~ikE~m~t 1930 (2005)
T COG5103 1865 SEILTMLWIRMRAGGPPKRYFLLTAILAQLRYPEIHTYDFSRVFLKSFKSHGYNPQKLLIKEQMTT 1930 (2005)
T ss_pred ccHHHHHHHHHhcCCCchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhcCCChHHHHHHHHHHH
Confidence 5589999999999999999999999999999999999999999999999875 3379999985
No 2
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=100.00 E-value=7.1e-269 Score=2513.18 Aligned_cols=1411 Identities=36% Similarity=0.560 Sum_probs=1105.2
Q ss_pred hhHHHHhhcCCchhHHHHHHHhhcccccCHHHHHHHHhhcCcchHHHHHHHHHHHHhhcccccccCCCCCCCcccccccc
Q 000081 532 KILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYM 611 (2362)
Q Consensus 532 k~L~~lL~~~pf~faidLA~lAsrre~L~LekWL~~~l~~~~~~F~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~ 611 (2362)
.-++.|.|+.||.++++.+.+|+.++++++..|+..++.--.+ |..++.-... .++.++.+..+...
T Consensus 82 ~~~~~v~Nm~pn~~~~n~~~la~~~~a~~F~~~l~~~~~~~~~-----~~~~~s~~~~--------~~q~~~~~~~~~~~ 148 (1591)
T KOG1831|consen 82 PGMDIVGNMSPNLEALNIRDLASCFGAVNFSIWLLESLYLMID-----DAVPLSLIIT--------APQEPSFKPWPNER 148 (1591)
T ss_pred CcchhhhhcCcchhhhchHhhhhhcCCCCchhhhcccceeecc-----CCCcccceee--------ccccccCCCChhHH
Confidence 4588899999999999999999999999999999988653211 1111111110 01111111111100
Q ss_pred -chHHHHHHHHHhhhCCCCcHHHHHHHHHHHHHhhccCCCCCCCCCCCC-----CCCCCChhhHHHHHHHHHHHhhccCC
Q 000081 612 -EKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADS-----STSEGYADDIEAEANSYFHQMFSGQL 685 (2362)
Q Consensus 612 -~tv~~lL~~L~~~~~~~~s~~l~e~l~~~~~~~i~~~PrL~n~~~~d~-----~~~~~~~~dVE~Ean~yfqkmYs~ei 685 (2362)
.++..++-.... +++ -.+..-+++.+|. .++.+|++|||+|||+||||||+ .+
T Consensus 149 ~~qi~~l~p~~~~---------------q~q-----rt~s~sa~~~~d~v~~~~~~~~~~s~die~E~~sYfqkiYn-~l 207 (1591)
T KOG1831|consen 149 FAQIYFLLPIGPS---------------QLQ-----RTESVSAPGPHDPVFFARQVSIEFSRDIEFEVNSYFQKIYN-CL 207 (1591)
T ss_pred HHHHHHHccCChh---------------hcc-----ccccccCCCCCCchhhhcccccccChhHHHHHHHHHHHHHH-Hh
Confidence 112211111100 000 1111113333443 35578999999999999999999 99
Q ss_pred CHHHHHHHHHHhhcCCCcccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000081 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (2362)
Q Consensus 686 sI~~iV~~L~r~K~S~~~rdqdvFaCMih~LFdEYrFF~~YP~~eL~~TAvLFG~lI~~~Lv~~~~L~iALr~ILeAlrk 765 (2362)
+|+++|++|+|||.|.++|||++|+||.|+||||||||++||++||++||+||||||.|+|+++.+||+|+|+|++|+++
T Consensus 208 sI~~vI~lL~rfr~Se~~Rdq~vf~C~~~~lF~EyrFF~dYPe~~L~~Ta~lfGsiI~~~Lls~v~l~la~R~Vl~~l~~ 287 (1591)
T KOG1831|consen 208 SIFQVIDLLQRFRLSELPRDQEVFACAAHNLFEEYRFFRDYPELALATTAVLFGSIIFFVLLSFVELGLALRLVLAALGI 287 (1591)
T ss_pred hHHHHHHHHHhcccccChhhhhHHHHHHhhccccccccccCHHHHHHHHHHhcchhHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhhcCCCCCCCCCCCcccccccccccC
Q 000081 766 PADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATS 845 (2362)
Q Consensus 766 p~~SkMf~FGiqAL~qF~~RL~EwPqyC~~Ll~Ip~L~~t~p~l~~~ie~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 845 (2362)
||+||||+||++||.+|+.||.+||+||.+|+.+|++...+|++|++|....- +.. . +.
T Consensus 288 P~~skl~~Fgv~Al~~frskL~~Yp~yC~~Il~~~~~s~~~~~l~~~I~~~~~---san----a---~~----------- 346 (1591)
T KOG1831|consen 288 PPSSKLFIFGVQALLPFRSKLLDYPKYCFDILSIPPFSKFRPHLYDSIWETAT---SAN----A---TT----------- 346 (1591)
T ss_pred CChhHHHHHHHHHHHHHHHHhcchHHHHHHHHhCcchhhccHHHHHHHHhhhh---hcc----C---CC-----------
Confidence 99999999999999999999999999999999999999999999999976321 110 0 00
Q ss_pred CCCCccCCcccccccchhhhHHHhhhccccccccccccccCCCCCCCccccCC-CCCcccCCCCCchhhhhccccCCccc
Q 000081 846 GNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIG-QPSSVAPLGDTSSAQKLHNAVSAPAM 924 (2362)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~qq~~~g~l~~~~~~~~~~~~~~~p~~~~i~-~~~~~~~~~~~~~~~~~~~~p~~~~~ 924 (2362)
....|..+..+ .++.+
T Consensus 347 ------------------------------------------~~s~pv~~~~p~~~~av--------------------- 363 (1591)
T KOG1831|consen 347 ------------------------------------------RKSDPVRSASPYLDSAV--------------------- 363 (1591)
T ss_pred ------------------------------------------cccccchhccccccccc---------------------
Confidence 00000000000 00000
Q ss_pred cccCCCccCCCCCccccccccccchhHHHHHhhhcCCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhH
Q 000081 925 LSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPW 1004 (2362)
Q Consensus 925 ~~~~~~~~~p~~~~~~~~~~~~~ni~tL~~a~e~~~~~~e~Ppe~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~W 1004 (2362)
+. + ..| .+.+.|||+|+|||+|++||+|+.|+.+|++|+|++|+++||+|
T Consensus 364 -s~--~-~~P--------------------------~n~~~~~e~v~dkilF~lNNlsq~N~~qKvdevk~~ltp~y~~W 413 (1591)
T KOG1831|consen 364 -SK--H-VEP--------------------------KNAEGPPEDVVDKILFPLNNLSQLNFNQKVDEVKEILTPEYYPW 413 (1591)
T ss_pred -cc--c-CCc--------------------------ccccCCchhhhhhheeeechHhhhhhHHHHHHHHHHcChhhHHH
Confidence 00 0 001 12357999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcccCCcchHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcchhhccChHHHHHHHHhhhhhhhhhhhcCcc
Q 000081 1005 FAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQV 1084 (2362)
Q Consensus 1005 FA~YLV~kRasiEPN~H~LYl~fLd~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkP 1084 (2362)
||+|+|+||||+|+|||+||.+|++.+++.. | -+||++|||||||||.||||||||
T Consensus 414 fs~YiV~qR~S~E~Nf~~LYskFi~ai~n~~--------t----------------~~dk~~LKNLgsWLG~iTl~rNkP 469 (1591)
T KOG1831|consen 414 FSQYIVTQRVSKEINFHELYSKFISAIKNSV--------T----------------ESDKRLLKNLGSWLGEITLGRNKP 469 (1591)
T ss_pred HHHHHhhhhhhcccchHHHHHHHHHHHhCcc--------c----------------hhHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999982 2 179999999999999999999999
Q ss_pred cccCCCChhhHHHHHHhcCceEEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcC
Q 000081 1085 LRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLG 1164 (2362)
Q Consensus 1085 I~~k~ld~K~LLlEaY~~g~Li~VIPFVcKVLe~~~~SkVFkPPNPWtm~IL~lL~Ely~~~~LKLnLKFEIEVL~K~L~ 1164 (2362)
|++.++|||+||+|||.+||+..|+|||||||+.|.+|+|||||||||||||++|+|+|+.||||+|||||||||||+||
T Consensus 470 I~~l~l~~kslLlEaY~sg~ll~VvPFVaKIL~~asksrIFkpPnpW~~gIlklL~ELh~e~d~klnLkFEIEVLlkslN 549 (1591)
T KOG1831|consen 470 IKELDLDFKSLLLEAYGSGRLLPVVPFVAKILEGASKSRIFKPPNPWTMGILKLLAELHQEADLKLNLKFEIEVLLKSLN 549 (1591)
T ss_pred hHHhhhhHHHHHHHHhccCceeecchHHHHHHHhhhhccccCCCCchHHHHHHHHHHhcccccceeeeeeeeeehhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccchhhhccCCCCCCCCCcCCCCCcccCCCCcCccCCCCCCCCCCCcCCCCCCCCCccccccccccccc
Q 000081 1165 VDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRL 1244 (2362)
Q Consensus 1165 ldl~dieps~~L~~r~~~~~~~~d~~~k~~~~~q~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~q~~~~~~~ 1244 (2362)
++++++||+++++|..+. .+.. ..+.++. + +..+++.. |
T Consensus 550 ~~l~~le~~~~lnn~~~i-~~~L-----------~~~~~e~--h-----~~~~~~~~---------------q------- 588 (1591)
T KOG1831|consen 550 VILSELEPSETLNNIIRI-KKQL-----------VLMKLET--H-----QSLELEDI---------------Q------- 588 (1591)
T ss_pred chHhhcchhhHHhhHHhH-HHHH-----------ccCChhh--c-----cccccCch---------------h-------
Confidence 999999999999994431 1111 0000000 0 00000000 0
Q ss_pred CcCcchhHHHHhhccCCCCCCccccccccCCCCCCCccccccc-CCCCCCceEEecccccccccchhhhhhHHHHHHHHH
Q 000081 1245 SSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAI 1323 (2362)
Q Consensus 1245 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~-~ip~l~~~v~i~~~l~~f~~~p~Lk~iv~~Ai~rAI 1323 (2362)
...+.+ ...|++++... ...++.+++.+.| ||++|++|+.|++++|
T Consensus 589 ------------------------~~~~~~--~~~fa~~~~n~~t~~~~i~~l~~~~-------~P~~Kh~~~~Aleqsv 635 (1591)
T KOG1831|consen 589 ------------------------QVTLGN--TIAFAYDARNVSTATEVIKQLDLRP-------HPDIKHRVQEALEQSV 635 (1591)
T ss_pred ------------------------cccccC--CccceecccccchhhhhhhhccCCC-------CccHHHHHHHHHHHHH
Confidence 000000 01144444321 1223333444444 8999999999999999
Q ss_pred HhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHH
Q 000081 1324 KEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASE 1403 (2362)
Q Consensus 1324 rEII~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTCkEPLr~si~~~Lr~ll~~~~~~~~ 1403 (2362)
+|||.||||||+.||++||+.||+||||+|+||+|||.||+.|||+||++||++||||||+++|+++|+..+.++.....
T Consensus 636 ~eii~~Vv~rs~~IA~ttTe~lirKDFA~e~~es~l~~Aa~~M~r~la~~lAmiTcreplk~am~~nl~~~~~~~l~~~~ 715 (1591)
T KOG1831|consen 636 VEIIEPVVERSSGIASTTTESLIRKDFALERDESRLRLAASQMVRELAAGLAMITCREPLKVAMSSNLVLAALSLLSLMA 715 (1591)
T ss_pred HHHHHHHHHHhhceeehhHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877666788
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcCcccccccccCCCCCCCCCCCCC
Q 000081 1404 LLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHL 1482 (2362)
Q Consensus 1404 ~~Eq~i~~~vnDNldLac~iIEKaA~EKAi~eIde~l~~~~~~RRkhre~-~~~~f~D~~~~~~~~~~LPepLrlkpggl 1482 (2362)
.+++++..+++||++++|++|||+|+|||++|||.+|++.+..|+.||++ ++.||+|+....+. ..|||++|+++||+
T Consensus 716 ai~~a~~t~~~dNv~l~~~~Iek~a~eka~~dI~~~L~q~~~~Rv~~k~~~~~~~fvD~~~~~~~-~~LP~~vr~~~~~~ 794 (1591)
T KOG1831|consen 716 AIARAADTLQSDNVELVVKFIEKTAIEKATQDIDSRLEQDICGRVFHKENPEVMPFVDLLSAAYS-CTLPEVVRLKIGGL 794 (1591)
T ss_pred HHHHHHHHHHhhchhhHhhhhHHHHHHHHHHHHHHHHHHhhHhheecccCCccccchhhhhhhhh-ccCcHhhhcccCCC
Confidence 99999999999999999999999999999999999999999999999997 68999999875554 44999999999999
Q ss_pred CHhHHHHHHhhhc-CCCCcC-CCCCCCccccCccCCCCchhhhhcccCCCCCCCCCCcCCCCCCCcccccCCccccCCCc
Q 000081 1483 SVSQQRVYEDFVR-LPWQNQ-SSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTT 1560 (2362)
Q Consensus 1483 ~~~Q~~VYEdF~r-~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 1560 (2362)
+|+|++|||+|+| +|+... ++...+.. | .+++.++++...
T Consensus 795 ~~~l~~vYe~F~k~i~~~~~~s~~~~la~----------------~----------------------~~~~~dlt~~~~ 836 (1591)
T KOG1831|consen 795 TPQLFRVYEEFPKPIPGFLGNSSRKDLAE----------------Y----------------------ITESSDLTQPHV 836 (1591)
T ss_pred CHHHHHHHHHcccccccccccCCCccccc----------------c----------------------cCCCccccchhh
Confidence 9999999999998 543111 11110000 0 011111110000
Q ss_pred ccCcccccccccccccCCCCCcccccccccccc-cCChhhhhhhccCCCCCCCCCCCCCCCCCCCchhhhcccccccccc
Q 000081 1561 ESTSAGFLSTSLVHIGAADGGILHNSESESVNA-AFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSL 1639 (2362)
Q Consensus 1561 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1639 (2362)
.+..+.... +++.++ .... .+..++.+.++.. ++ .....|+.+
T Consensus 837 -------~s~~~~lv~------~ei~~~-~~~~a~~~~i~~~~l~~~----------a~---s~~~~m~~v--------- 880 (1591)
T KOG1831|consen 837 -------ISNALDLVV------REICGA-IVEKACQTAIQTGMLQFK----------AQ---SVEKLMEEV--------- 880 (1591)
T ss_pred -------hhHHHHHHH------HHHHHH-HHHHHHHHHHHhhhhhhh----------hh---cchhhHHhc---------
Confidence 000000000 000000 0000 0000000000000 00 000011111
Q ss_pred chhhhHHHHHHHHHHHHHHhhcCCcchhhHHHhhhhHHHHHhhcChhHHHHHHHH--HHHHHHhcccCCcchHHHHHHHH
Q 000081 1640 QTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQ--KVFKGLYENASNNLHFSAHLAIL 1717 (2362)
Q Consensus 1640 ~~~~~l~~~~~~~~~l~~l~~~~~~~~~i~~~i~~v~~~i~~~~~rde~al~~aq--ki~~~L~~~~~~~l~~ev~~~~L 1717 (2362)
+.++..............++. ..-.+-.+.+ +.+...+ ..+--.+++..+|
T Consensus 881 -----------------------~~~~~~~~~~~~~~~~~ar~i-~hli~~~V~~~~~~l~~~~---~~~~I~~i~m~iL 933 (1591)
T KOG1831|consen 881 -----------------------PARNMVVNLVNSLLLLVARSI-EHLISGLVSYFMKNLELDF---STEKIFKIIMEIL 933 (1591)
T ss_pred -----------------------cchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHH
Confidence 000000000000000000000 0000001111 1111111 1122345677788
Q ss_pred HHHHHHhHH-HHHHHHHhhhccccccccCHHHHHHHHHhCCCChhHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCch
Q 000081 1718 AAIRDVCKL-VVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESR 1796 (2362)
Q Consensus 1718 ~~L~~~~~~-~~kevt~wl~~~~d~rk~N~~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~e~~ 1796 (2362)
+-+|....+ ..+.|+-.+..+++++|||++.+..|++.+|++..++|.+|+++||+|.|..++.|+++|++....++..
T Consensus 934 ~~ic~~~qk~~~~~vs~a~s~~~~~~e~n~~~~~~L~~~~l~~~~~vd~~l~~amDs~~n~~vi~f~iell~~~~~~dnv 1013 (1591)
T KOG1831|consen 934 DNICRFIQKAGVRKVSEAISSSRSSLEYNIEKAEHLILSLLLDSGHVDKHLAKAMDSGGNQEVIAFLIELLRIAYGGDNV 1013 (1591)
T ss_pred HHHHHhccHHHHHHHHHHHHhchHHHHhhHHHHHHHHHHhccChhhHHHHHHHHhccCCChHHHHHHHHHHHHhccCcch
Confidence 888887744 5555777888999999999999999999999999999999999999999999999999999988888875
Q ss_pred hhH---hhHHHHHHHHHHHHcCCCCh----hHH----HHHHHHHhCcccccCCCCCCccccchhhhhhcccccccCcccC
Q 000081 1797 VVI---SELHNLVDALAKLAAKPGSP----ESL----QQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTAN 1865 (2362)
Q Consensus 1797 ~~~---~df~~tleaL~kl~~~~~~~----~~l----~~l~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1865 (2362)
+.. ..|..|.|.+.|+.+.-.+. +.. ...++.+-. ++.+
T Consensus 1014 i~~~~~~~~~~t~E~~~ri~q~v~s~~~~~g~~~~~~~~~v~~~~k----------------------------~~s~-- 1063 (1591)
T KOG1831|consen 1014 IADEWKNLFKETKEELFRILQSVESSEDKSGECASLCDYIVEHAIK----------------------------SGSS-- 1063 (1591)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccC----------------------------CCCc--
Confidence 433 35778999998864321110 011 111111100 0000
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHcCccCCCchhHHHHHHHHHHHHHHhhhcc
Q 000081 1866 REDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSE 1945 (2362)
Q Consensus 1866 ~~~~~~~~~~~~dp~~~~eq~~~lF~EWv~l~~~~~~~~~~~~~Fi~qL~~~giL~~dd~~~~FfR~~~E~sV~~~~~~~ 1945 (2362)
...-....+|+.++.||++.+|.|||++|+.+..++...++||+||+++|||++||..++|||.|+|+||+.++...
T Consensus 1064 ---~~~m~~~~~~~~~lt~K~~~v~~~Wv~L~~~~~~~~~s~~~fi~ql~~~GVls~dd~ltqFfr~~~el~~~i~~~a~ 1140 (1591)
T KOG1831|consen 1064 ---ADFMFRRMDDKQKLTEKTEIVFLEWVILLNDSRKNDESLAAFIQQLNEIGVLSTDDLLTQFFRADLELCVVIFLEAS 1140 (1591)
T ss_pred ---hhHHHHhcCcchhhhhHHHHHHHHHHHHHhccccchHHHHHHHHHHHHcCcccchHHHHHHHHhhhhhhHHHHHHhc
Confidence 00012234677899999999999999999999999999999999999999999999999999999999999998543
Q ss_pred ccCCCCCCCCCccccccc-hHhhHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHH
Q 000081 1946 VINPGTLQSPQQSQSLSF-LAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFI 2024 (2362)
Q Consensus 1946 ~~~~g~~~~~s~~~~~~f-~~IDA~akLi~~lvk~~~~~~~~~k~~~L~kiLsiiv~vl~~dhe~~~~~FnQRpyfRlfs 2024 (2362)
.. ....+ .+++||.+....|.+|.. +++|.+|++||+++|++|+++||+++|+.|||+||||+|+
T Consensus 1141 ~~-----------~a~~~i~tv~~~~~~l~~l~~f~d---~~tk~dl~~KI~~livgv~akdHs~~~e~f~~~~y~Rlf~ 1206 (1591)
T KOG1831|consen 1141 LI-----------TALVQICTVYAFICTLEMLDGFVD---LPTKIDLFNKILNLIVGVFAKDHSERGEYFNQCPYFRLFS 1206 (1591)
T ss_pred cc-----------ccchhhhhHHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHhcchHHhhhhHhhCcHhHHHH
Confidence 10 12222 578888888888888863 3789999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCcchHHHHHHHHHHhhhcCCCCCCchHHHHhHhhhcccchhhhhcCCCCCChHHHHHHHHHHHHhhh
Q 000081 2025 NWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLE 2104 (2362)
Q Consensus 2025 ~LL~el~~~d~~l~~~~~~il~~fa~~l~~LqP~~~PgFaFaWLeLISHR~FmP~lL~~~~~kGW~~~~~LL~~LlkFl~ 2104 (2362)
|+|.||.+++.+++.+.++|+++|+++||.|||.++|||+||||+|||||+|+|+||..+++|||+.|.+|+++|||||+
T Consensus 1207 ~ll~E~~~~~~~le~~~~~i~SaF~~tfhalqp~~~Pgf~fawL~lishr~li~~~L~~~~~k~~~~~~~llislfkfL~ 1286 (1591)
T KOG1831|consen 1207 MLLPELMTADSVLEPISLDILSAFKNTFHALQPRRFPGFAFAWLELISHRGLIPRMLAETNQKGWPLYAQLLISLFKFLA 1286 (1591)
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHHHHhCcccCcccceeeeecccchhHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCchhhHhhHhHHHHHHHhhcccchHHHHHhhhhhccCCCcccccccceecccCCCCCCCCCCCCCCCCCCCc
Q 000081 2105 PFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLP 2184 (2362)
Q Consensus 2105 p~Lr~~~ls~~i~~lYkGtLRiLLVLlHDFPEFL~eyH~~lCd~IP~~CiQLRNlILSAfPr~mrLPDPftpnLKvD~Lp 2184 (2362)
||+||.+++++++.+|||||||+|||+||||||||+|||.|||.|||+|+||||+|||||||+|++||||++|||||+||
T Consensus 1287 ~ylrn~~~~k~~~~lykgTLrVilvllhDfp~fl~~~hy~~~~~iPp~cvqlrniilsafp~~m~lpdpf~~~lkve~lp 1366 (1591)
T KOG1831|consen 1287 PYLRNYELFKPVQLLYKGTLRVILVLLHDFPEFLCEYHYGLCDTIPPNCVQLRNIILSAFPSNMRLPDPFAVNLKVEMLP 1366 (1591)
T ss_pred HHHhhhhhhhHHHHHHHcchHHhhcccccchHHHHHhhhhccCCCCcHHHHHHHHHHHhccccCcCCCccccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCccccchHHHHhhhhhhHHHHHHhccCCCCcchHHHHHHHccCCccccccCCccccHhHHHHHHHHHHHHHHHhh
Q 000081 2185 EIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQL 2264 (2362)
Q Consensus 2185 Ei~~~P~I~~d~~~~L~~~~lk~~vD~yL~~r~~~~s~l~~l~~~L~~~~~e~~~~G~~yN~~LiNAlVLyVG~~Ai~~~ 2264 (2362)
|+..+|+|+++++. +.+...|+++|.|+++|.+. +|+..++.-++... .+|++||..+|||+|+|||++||.++
T Consensus 1367 e~~~ap~i~~~~~~-i~~~~~~~dl~a~l~s~~~~-t~l~~~~~~~~~~~----~~~~~~~~~~~naiVlyvG~~ai~~~ 1440 (1591)
T KOG1831|consen 1367 EGFYAPRILYSITQ-IMPSNFRKDLDARLKSSSPV-TFLSCLPQLLQVIK----EPGTRYNNQLINAIVLYVGIQAIAHL 1440 (1591)
T ss_pred hhhcCchhcCCHHH-hcccccCCCHHHHhhccccH-hHHHHhhHHHHHhc----CccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 88899999999999999996 99999998887643 48999999999999999999999999
Q ss_pred hccCCcccccCCCCchhhhhhhhHHHHHHHHHHhcCcchhHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccchhhHHHH
Q 000081 2265 QTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQVRVSTA 2344 (2362)
Q Consensus 2265 ~~~~~~~~~~~~~~~~~~f~~s~~~~i~~~L~~~Ld~EgRY~~lnAIaNQLRYPNsHThyFS~vlL~LF~e~~~e~IqEq 2344 (2362)
++++..++++ +++|+++|+||++|+.+||+||||++++||||||||||+|||||||++||||.+++.+-||||
T Consensus 1441 ~~~~~~~~~~-------~it~s~~~~i~~nL~~nld~e~ry~~l~aianqlryp~~ht~~~s~~~l~lfk~~~~~pike~ 1513 (1591)
T KOG1831|consen 1441 RRKSQNPSTS-------TITHSAYMDIFQNLIVNLDTEGRYLLLNAIANQLRYPNSHTYYFSCVFLYLFKRAGNNPIKEQ 1513 (1591)
T ss_pred HhccCCCccc-------ccccCchhhHHHHHHHhcchhhhHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCCCchHHH
Confidence 9887665544 467899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000081 2345 VYLLSF 2350 (2362)
Q Consensus 2345 I~~~~~ 2350 (2362)
||-..+
T Consensus 1514 i~~~~l 1519 (1591)
T KOG1831|consen 1514 ITRVLL 1519 (1591)
T ss_pred HHHHHH
Confidence 996543
No 3
>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [].
Probab=100.00 E-value=8.3e-92 Score=861.59 Aligned_cols=313 Identities=52% Similarity=0.946 Sum_probs=290.5
Q ss_pred HHHHhhcCCCC--CCCcch--HHHHHHHHHHhhhcCCCCCCchHHHHhHhhhcccchhhhhc-CCCCCChHHHHHHHHHH
Q 000081 2025 NWLLDMSSLDP--VADGSN--FQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLI-GNGQKGWPYIQRLLVNL 2099 (2362)
Q Consensus 2025 ~LL~el~~~d~--~l~~~~--~~il~~fa~~l~~LqP~~~PgFaFaWLeLISHR~FmP~lL~-~~~~kGW~~~~~LL~~L 2099 (2362)
||||||+..+. .++..+ .+++.+||++||.|||.+||||+|||++|||||+|||+||. .++++||+.|++||++|
T Consensus 1 ~ll~e~~~~~~~~~~~~~~~~~~~~~~fa~~l~~lqP~~~PgF~faWl~LisHR~Flp~lL~~~~~~~gW~~~~~Ll~~l 80 (379)
T PF04054_consen 1 SLLCELHAISIEDSLESEELDRQFLLAFASFLHSLQPLYFPGFAFAWLELISHRMFLPKLLRNSPDQKGWPAYTRLLIDL 80 (379)
T ss_pred CeeeecccCcccccchhhhhHHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Confidence 58999995332 344344 59999999999999999999999999999999999999999 88999999999999999
Q ss_pred HHhhhhhccCCCCCchhhHhhHhHHHHHHHhhcccchHHHHHhhhhhccCCCcccccccceecccCCCCCCCCCCCCCCC
Q 000081 2100 LQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLK 2179 (2362)
Q Consensus 2100 lkFl~p~Lr~~~ls~~i~~lYkGtLRiLLVLlHDFPEFL~eyH~~lCd~IP~~CiQLRNlILSAfPr~mrLPDPftpnLK 2179 (2362)
|+|+++|+|+.+++++++++||||||++|||+||||||||+||++||++||++|+||||+||||||++|+|||||+||+|
T Consensus 81 l~Fl~~~l~~~~~~~~~~~lYkg~LRillvL~HDfPeFL~~~h~~lc~~iP~~ciQLrNiILsA~P~~~~lpDPf~~~lk 160 (379)
T PF04054_consen 81 LKFLGPYLKNEELSDAIKVLYKGTLRILLVLLHDFPEFLCEYHFSLCDVIPPHCIQLRNIILSAFPRNMKLPDPFTPGLK 160 (379)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhcChhHHHHHHHHHHhCCCCCCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcCCCCccccchHHHHhhhhhhHHHHHHhccCCCCcchHHHHHHHccCCcccccc----CCccccHhHHHHHHHH
Q 000081 2180 IDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAAS----AGTRYNVPLINSLVLY 2255 (2362)
Q Consensus 2180 vD~LpEi~~~P~I~~d~~~~L~~~~lk~~vD~yL~~r~~~~s~l~~l~~~L~~~~~e~~~----~G~~yN~~LiNAlVLy 2255 (2362)
||++|||+++|.|++|++..|++.+||++||+||++|++ ++++++|+++|+.++.+... .|++||+++|||+|+|
T Consensus 161 vd~l~e~~~~P~i~~d~~~~L~~~~lk~~vd~~l~~~~~-~~~l~~i~~~l~~~~~~~~~~~g~~~~~~n~~linalVly 239 (379)
T PF04054_consen 161 VDRLPEIKQAPKILSDPTEDLQQAGLKKPVDQYLRNGPS-ESLLAQILHKLQLPEPEETNGFGFDGVKYNVKLINALVLY 239 (379)
T ss_pred chhchhhccCCccccchhhhcchHHHHHHHHHHHHhCCC-HHHHHHHHHHhcCCccccccccCCCCccccHHHHHHHHHH
Confidence 999999999999999999999999999999999987554 49999999999998876542 6799999999999999
Q ss_pred HHHHHHHhhhccCCcccccCCCCchhhhhhhhHHHHHHHHHHhcCcchhHHHHHHHHhhhcCCCchhHHHHHHHHHHhh-
Q 000081 2256 VGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYA- 2334 (2362)
Q Consensus 2256 VG~~Ai~~~~~~~~~~~~~~~~~~~~~f~~s~~~~i~~~L~~~Ld~EgRY~~lnAIaNQLRYPNsHThyFS~vlL~LF~- 2334 (2362)
||++|+.+.+.++..+.+.++ ++++++|++|++++|+||||++++||||||||||+|||||||+||+||+
T Consensus 240 vg~~a~~~~~~~~~~~~f~~~---------s~~~~ll~~Li~~ld~E~RY~ll~aiaNqLRYPN~HT~~Fs~~lL~lF~~ 310 (379)
T PF04054_consen 240 VGIQAVAEAQKKSSAPSFNTK---------SPHVTLLSKLIHELDPEGRYYLLSAIANQLRYPNSHTHFFSCVLLNLFSS 310 (379)
T ss_pred HhHHHHHHHhccCCCcccccc---------ChHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 999999887666655555443 6799999999999999999999999999999999999999999999999
Q ss_pred ---ccchhhHHHHHHH
Q 000081 2335 ---EANQVRVSTAVYL 2347 (2362)
Q Consensus 2335 ---e~~~e~IqEqI~~ 2347 (2362)
+.+++.||||||-
T Consensus 311 ~~~~~~~~~IqEqItR 326 (379)
T PF04054_consen 311 DMNDPNDEDIQEQITR 326 (379)
T ss_pred CCCccchhhhHHHHHH
Confidence 8889999999995
No 4
>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. This entry represents a domain of unknown function found in the Not1 subunit of the CCR4-Not complex.
Probab=100.00 E-value=2.7e-46 Score=406.09 Aligned_cols=145 Identities=56% Similarity=0.809 Sum_probs=140.2
Q ss_pred chhhhhhHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHH
Q 000081 1308 HLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSI 1387 (2362)
Q Consensus 1308 ~p~Lk~iv~~Ai~rAIrEII~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTCkEPLr~si 1387 (2362)
||+||++|+.|+||||||||.|||||||+||++||++||+||||+||||+|||+|||+||++||||||+||||||||.+|
T Consensus 1 ~p~lk~~v~~Al~rai~Eii~pvveRsv~IA~~Tt~~LV~KDFa~E~De~~~r~aa~~Mv~~LA~sLalvTcrepL~~~i 80 (147)
T PF12842_consen 1 HPQLKRIVQNALDRAIREIISPVVERSVTIASITTEELVKKDFATEPDENKMRRAAHNMVRSLAGSLALVTCREPLRESI 80 (147)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-CC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 000081 1388 SSQLRNSLQGL-TI-ASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHRE 1452 (2362)
Q Consensus 1388 ~~~Lr~ll~~~-~~-~~~~~Eq~i~~~vnDNldLac~iIEKaA~EKAi~eIde~l~~~~~~RRkhre 1452 (2362)
.+|||+++++. +. .++++|+++++++|||+||||++|||+|+|||++|||+.|+++|+.||+|||
T Consensus 81 ~~~l~~~l~~~~~~~~~~~~e~~i~~~~~dNlel~~~~Iek~a~eka~~~id~~l~~~~~~R~~~re 147 (147)
T PF12842_consen 81 QNNLRSLLSQLNGSTEQELPEQAIQQIVNDNLELACAFIEKAAMEKAIKEIDERLEPEIELRRRHRE 147 (147)
T ss_pred HHHHHHHHHhhcCCchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999853 33 4689999999999999999999999999999999999999999999999996
No 5
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=96.99 E-value=1.2 Score=62.65 Aligned_cols=294 Identities=21% Similarity=0.244 Sum_probs=178.7
Q ss_pred HhhhcccCCcchHHHHHHHHHhCChhHHHHHHHHHHH-HHHHHhcchhhccChHHHHHHHHhhhhhhhhhhhcCcccccC
Q 000081 1010 VMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYE-NCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAR 1088 (2362)
Q Consensus 1010 V~kRasiEPN~H~LYl~fLd~l~~~~L~~~Vl~eTy~-~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k 1088 (2362)
+.|==..|++=..||+.+... .+.|-+-+...|-+ -+++..++.. ++..=| +=.+..|.++-+..-
T Consensus 658 irKDFA~e~~es~l~~Aa~~M--~r~la~~lAmiTcreplk~am~~nl-------~~~~~~----~l~~~~ai~~a~~t~ 724 (1591)
T KOG1831|consen 658 IRKDFALERDESRLRLAASQM--VRELAAGLAMITCREPLKVAMSSNL-------VLAALS----LLSLMAAIARAADTL 724 (1591)
T ss_pred HHHHHhcccchhHHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHhhH-------HHHHhh----hhHHHHHHHHHHHHH
Confidence 333446788888888887654 23444555555554 2333333221 111111 111577888888888
Q ss_pred CCChhhHHHHHHhcCceEEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCcc
Q 000081 1089 EIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMK 1168 (2362)
Q Consensus 1089 ~ld~K~LLlEaY~~g~Li~VIPFVcKVLe~~~~SkVFkPPNPWtm~IL~lL~Ely~~~~LKLnLKFEIEVL~K~L~ldl~ 1168 (2362)
--|.+.+-+.-.++-++.-.+-++.+-|++..--+||.+.|||.|.++-.+.+.|++- |. +-++++..
T Consensus 725 ~~dNv~l~~~~Iek~a~eka~~dI~~~L~q~~~~Rv~~k~~~~~~~fvD~~~~~~~~~-LP-----------~~vr~~~~ 792 (1591)
T KOG1831|consen 725 QSDNVELVVKFIEKTAIEKATQDIDSRLEQDICGRVFHKENPEVMPFVDLLSAAYSCT-LP-----------EVVRLKIG 792 (1591)
T ss_pred HhhchhhHhhhhHHHHHHHHHHHHHHHHHHhhHhheecccCCccccchhhhhhhhhcc-Cc-----------HhhhcccC
Confidence 8889999999999999999999999999999999999999999999999999999975 22 22333333
Q ss_pred cccccccccchhhhccCCCCCCCCCcCCCCCcccCCCCcCccCCCCCCCCCCCcCCCCCCCCCcccccccccccccCcCc
Q 000081 1169 DITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGT 1248 (2362)
Q Consensus 1169 dieps~~L~~r~~~~~~~~d~~~k~~~~~q~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 1248 (2362)
.+.|.-+ +-.++ |. ...|+. . +.+ +.
T Consensus 793 ~~~~~l~-----~vYe~---F~---------k~i~~~----~-~~s-----------~~--------------------- 818 (1591)
T KOG1831|consen 793 GLTPQLF-----RVYEE---FP---------KPIPGF----L-GNS-----------SR--------------------- 818 (1591)
T ss_pred CCCHHHH-----HHHHH---cc---------cccccc----c-ccC-----------CC---------------------
Confidence 3222211 00000 00 000100 0 000 00
Q ss_pred chhHHHHhhccCCCCCCccccccccCCCCCCCcccccccCCCCCCceEEecccccccccchhhhhhHHHHHHHHHHhhhh
Q 000081 1249 LMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVS 1328 (2362)
Q Consensus 1249 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~~ip~l~~~v~i~~~l~~f~~~p~Lk~iv~~Ai~rAIrEII~ 1328 (2362)
+++..++.=+..+ .-...+..+.+-..+||.+
T Consensus 819 -----------------------------------------~~la~~~~~~~dl-------t~~~~~s~~~~lv~~ei~~ 850 (1591)
T KOG1831|consen 819 -----------------------------------------KDLAEYITESSDL-------TQPHVISNALDLVVREICG 850 (1591)
T ss_pred -----------------------------------------cccccccCCCccc-------cchhhhhHHHHHHHHHHHH
Confidence 0000000000000 0013458889999999999
Q ss_pred hcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 000081 1329 GIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQA 1408 (2362)
Q Consensus 1329 PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTCkEPLr~si~~~Lr~ll~~~~~~~~~~Eq~ 1408 (2362)
-+++|....|..+.+ +-.|-+.+++--+ .-=|.+|+-+++.|+..+.. +++..-|..|.-....++. ..---+-
T Consensus 851 ~~~~~a~~~~i~~~~-l~~~a~s~~~~m~--~v~~~~~~~~~~~~~~~~~a-r~i~hli~~~V~~~~~~l~--~~~~~~~ 924 (1591)
T KOG1831|consen 851 AIVEKACQTAIQTGM-LQFKAQSVEKLME--EVPARNMVVNLVNSLLLLVA-RSIEHLISGLVSYFMKNLE--LDFSTEK 924 (1591)
T ss_pred HHHHHHHHHHHHhhh-hhhhhhcchhhHH--hccchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--Hhhcchh
Confidence 999998888777777 7677777765433 22367899999999887777 6666666655433211111 1111122
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000081 1409 VQLVTNDNLDLGCAVIEQAATDKAIQTI 1436 (2362)
Q Consensus 1409 i~~~vnDNldLac~iIEKaA~EKAi~eI 1436 (2362)
|..++-.|+|.+|.++.|++..|...-|
T Consensus 925 I~~i~m~iL~~ic~~~qk~~~~~vs~a~ 952 (1591)
T KOG1831|consen 925 IFKIIMEILDNICRFIQKAGVRKVSEAI 952 (1591)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5677889999999999999988544433
No 6
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=91.78 E-value=1.4 Score=50.89 Aligned_cols=180 Identities=21% Similarity=0.262 Sum_probs=119.5
Q ss_pred HhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHH---HHhhhcccCCcchHHHHHHHHHhCC--hhHHHHHHHHHHH
Q 000081 972 DKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQY---MVMKRASIEPNFHDLYLKFLDKVNS--KALNREIVQATYE 1046 (2362)
Q Consensus 972 DKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~Y---LV~kRasiEPN~H~LYl~fLd~l~~--~~L~~~Vl~eTy~ 1046 (2362)
.+|.-++|-+|++|++.-++|+.+..... +....+ .+++++-.+|+|-.+|..++..++. +.+-..+++.++.
T Consensus 2 ~~v~~~lnkLs~~n~~~~~~~l~~~~~~~--~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~~~~~~f~~~ll~~~~~ 79 (200)
T smart00543 2 KKVKGLINKLSPSNFESIIKELLKLNNSD--KNLRKYILELIFEKAVEEPNFIPAYARLCALLNAKNPDFGSLLLERLQE 79 (200)
T ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999888653 344444 3567899999999999999999986 5677788888887
Q ss_pred HHHHHhcchhhccChHHHHHHHHhhhhhhhhhhhcCcccccCCCChhhHHHHHHhcCce------EEEechhhhcccccC
Q 000081 1047 NCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLM------IAVIPFTSKILEPCQ 1120 (2362)
Q Consensus 1047 ~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LLlEaY~~g~L------i~VIPFVcKVLe~~~ 1120 (2362)
.....+... ...++...+|+--.||.+..-+=-+.. .+.+++-+--+...- ..-|=.+|.+|+.|.
T Consensus 80 ~f~~~~e~~----~~~~~~~~~~~i~fl~eL~~~~~i~~~----~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G 151 (200)
T smart00543 80 EFEKGLESE----EESDKQRRLGLVRFLGELYNFQVLTSK----IILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCG 151 (200)
T ss_pred HHHHHHHHH----HHHhhhhHHhHHHHHHHHHHcccCcHH----HHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhh
Confidence 776654332 335666778888888888765443322 112222222222111 134456778888876
Q ss_pred CCccccCCCccHHH-HHHHHHHHhcCC---cccchhHHHHHHHHhh
Q 000081 1121 SSLAYQPPNPWTMA-ILGLLAEIYSMP---NLKMNLKFDIEVLFKN 1162 (2362)
Q Consensus 1121 ~SkVFkPPNPWtm~-IL~lL~Ely~~~---~LKLnLKFEIEVL~K~ 1162 (2362)
..--+ +.+|=.|. ++..+....... ++....+|-+|-|+.-
T Consensus 152 ~~l~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~r~~~~l~~l~~l 196 (200)
T smart00543 152 KDLER-EKSPKLLDEILERLQDYLLKKDKTELSSRLRFMLELLIEL 196 (200)
T ss_pred HHHcC-cccHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHH
Confidence 65433 56655554 445555555555 5777788888877653
No 7
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=82.32 E-value=4 Score=52.63 Aligned_cols=113 Identities=20% Similarity=0.242 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhh---cCC---Cc---HHHH
Q 000081 1335 VSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQ---GLT---IA---SELL 1405 (2362)
Q Consensus 1335 VtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTCkEPLr~si~~~Lr~ll~---~~~---~~---~~~~ 1405 (2362)
.-||.+-+-+.|.|||-|++.. .-.|.|...+.+=+++.|---||-.||.|-+|-+=. .+. ++ .+.+
T Consensus 255 RCIa~L~afqevi~Dy~TP~~k----tlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~eI~~L~~s~~e~eaKe~L 330 (556)
T KOG1467|consen 255 RCIAMLQAFQEVIKDYTTPPEK----TLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKNEISKLPISLSESEAKEEL 330 (556)
T ss_pred HHHHHHHHHHHHHHhccCCCcc----ccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHHHHhhCCCCCChHHHHHHH
Confidence 4599999999999999999877 567788888888888777668999999999997632 222 22 3555
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhh
Q 000081 1406 EQAVQLVTNDNLDLGCAVIEQAATDKAI-----------QTIDGEIAQQLSLRRKHR 1451 (2362)
Q Consensus 1406 Eq~i~~~vnDNldLac~iIEKaA~EKAi-----------~eIde~l~~~~~~RRkhr 1451 (2362)
-..|..-+++++.+|-..|-+.|.+|.- .-++..|..+-+.+++.|
T Consensus 331 ~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~fr 387 (556)
T KOG1467|consen 331 QSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFR 387 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceE
Confidence 5668889999999999999999999842 234555666665444444
No 8
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=81.08 E-value=5.2 Score=46.08 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=80.1
Q ss_pred hHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHH---HHhhhcccCCcchHHHHHHHHHhCCh---hHHHHHHHHHHH
Q 000081 973 KISFIINNISALNVEAKAKEFTEILKEQYYPWFAQY---MVMKRASIEPNFHDLYLKFLDKVNSK---ALNREIVQATYE 1046 (2362)
Q Consensus 973 KI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~Y---LV~kRasiEPN~H~LYl~fLd~l~~~---~L~~~Vl~eTy~ 1046 (2362)
||.-++|-+|..|++.-++++.+..... .++...+ ++.++|..+|+|..+|..++..+... .+-..+++.+++
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~-~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~~~ 81 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSD-DPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRCQE 81 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 6778999999999999999999998776 4455444 34678999999999999999998743 455666666665
Q ss_pred HHHHHh-cchhhccChHHHHHHHHhhhhhhhhhhhc
Q 000081 1047 NCKVLL-GSELIKSSSEERSLLKNLGSWLGKLTIGR 1081 (2362)
Q Consensus 1047 ~i~~LL-~Se~~~~ss~eRslLKNLGsWLG~iTLar 1081 (2362)
.+.... ..+.......++...+|+.-+||.+....
T Consensus 82 ~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~ 117 (209)
T PF02854_consen 82 EFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFG 117 (209)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhc
Confidence 554411 01222345677888899999999887643
No 9
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.33 E-value=1.7e+02 Score=31.01 Aligned_cols=71 Identities=15% Similarity=0.322 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHhhcCCCcccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000081 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (2362)
Q Consensus 686 sI~~iV~~L~r~K~S~~~rdqdvFaCMih~LFdEYrFF~~YP~~eL~~TAvLFG~lI~~~Lv~~~~L~iALr~ILeAlrk 765 (2362)
..+|.+..+++++-+ ....++..-+|+..+|+ =..+-..++.|+..+++.++++...+.-|+.-+++.+.+
T Consensus 17 d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~-------~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~D 87 (113)
T PF02847_consen 17 DVDEAVECLKELKLP--SQHHEVVKVILECALEE-------KKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLESLED 87 (113)
T ss_dssp -HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTS-------SHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhh
Confidence 678888888888666 56678888888888888 345566699999999999999999999999888877754
No 10
>COG5088 SOH1 Rad5p-binding protein [General function prediction only]
Probab=35.81 E-value=81 Score=33.17 Aligned_cols=89 Identities=24% Similarity=0.339 Sum_probs=66.0
Q ss_pred ccHHHHHHHHHHHhhhcchhHhHHHHHhhhcccCCcchHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcchhhccChHH
Q 000081 984 LNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEE 1063 (2362)
Q Consensus 984 ~Nl~~K~~Elk~~L~~~y~~WFA~YLV~kRasiEPN~H~LYl~fLd~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ss~e 1063 (2362)
+-+|-.++=+.-+-.+.|-.|+++.=.-+ -+|| .-|++.++--.+|+--++|+--|.--|-.||++......-+|
T Consensus 15 sRFE~ELEFvQ~L~Np~Yl~~Ltq~~~fe----se~F-~~YL~YlEYWr~PeYs~fivYP~CL~iL~lLn~~~~~~~vs~ 89 (114)
T COG5088 15 SRFEVELEFVQSLANPQYLTLLTQQQIFE----SENF-KNYLKYLEYWRNPEYSQFIVYPNCLFILKLLNGFMESAIVSE 89 (114)
T ss_pred chhHHHHHHHHHhcCHHHHHHHHHhhhhc----CHHH-HHHHHHHHHhhCCcccceeechhHHHHHHHhcchhHhhhhhh
Confidence 44444444444444678888888754433 2344 569999999999999999887777777888998877777789
Q ss_pred HHHHHHhh-----hhhhhh
Q 000081 1064 RSLLKNLG-----SWLGKL 1077 (2362)
Q Consensus 1064 RslLKNLG-----sWLG~i 1077 (2362)
-.++|.|| -|||+.
T Consensus 90 ~~l~~~l~e~qy~~Wlnk~ 108 (114)
T COG5088 90 DGLLEGLDELQYPQWLNKM 108 (114)
T ss_pred hHHHHhhhHHHHHHHHHHH
Confidence 99999998 488765
No 11
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=30.02 E-value=75 Score=40.47 Aligned_cols=73 Identities=25% Similarity=0.461 Sum_probs=48.2
Q ss_pred chhhhhcCCCCC--ChHHHHHHHHHHHHhhhhhccCCCCCchhhHhhHhHHHHHHHhh------------cccchHHHHH
Q 000081 2076 FMPKLLIGNGQK--GWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLL------------HDFPEFLCDY 2141 (2362)
Q Consensus 2076 FmP~lL~~~~~k--GW~~~~~LL~~LlkFl~p~Lr~~~ls~~i~~lYkGtLRiLLVLl------------HDFPEFL~ey 2141 (2362)
|--.|+....|+ -|..+..+|-+++++.+||-- ..++|+||+.+=... +|||+||-.
T Consensus 113 f~~dL~~G~~qkhP~l~~v~~~l~~~lr~fGpF~s--------~~IikSTLdFv~g~~iEq~nf~~~p~A~~fP~ylR~- 183 (357)
T cd00686 113 YFDDLQAGREQAHPWWALVNEHFPNVLRHFGPFCS--------LNLIRSTLDFFEGCWIEQYNFGGFPGSHDYPQFLRR- 183 (357)
T ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHhhhccCCCCCCcccchHHHh-
Confidence 444444444333 478888888888888999854 678899998865442 488888743
Q ss_pred hhhhhccCCCcccccccceecccCCC
Q 000081 2142 HFTFCDVIPPSCIQMRNIILSAFPRN 2167 (2362)
Q Consensus 2142 H~~lCd~IP~~CiQLRNlILSAfPr~ 2167 (2362)
-+-++.- .-.+.||+.
T Consensus 184 ----ksGl~E~------yA~FiFPk~ 199 (357)
T cd00686 184 ----MNGLGHC------VGASLWPKE 199 (357)
T ss_pred ----ccCCcce------eEEEecchh
Confidence 3344433 356778875
No 12
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=26.86 E-value=1.4e+02 Score=30.32 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHhhhhhchHHHHHHHHHHHhhccchhhHHHHhhhcccccCCCCCCCchHHHHHHH
Q 000081 7 TVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVAS 71 (2362)
Q Consensus 7 ~~~~qi~~l~~~~~~~n~~~~~~el~~~~~~g~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ll~~ 71 (2362)
+...+|+.+++.+-+++|+.++..+.+++.-|..+.- +++.+.+.+--. +.++.+|..++..
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~-Il~~l~~~l~~~--~~~~~~k~~i~~~ 64 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELLVEGYSASD-ILKQLHEVLVES--DIPDSQKAEILKI 64 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHH-HHHHHHHHHHTS--TSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHh--hccHHHHHHHHHH
Confidence 3468899999999999999999999999966999985 788888766433 4556666665543
No 13
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=23.34 E-value=3.6e+02 Score=28.59 Aligned_cols=71 Identities=13% Similarity=0.302 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHhhcCCCcccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000081 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (2362)
Q Consensus 686 sI~~iV~~L~r~K~S~~~rdqdvFaCMih~LFdEYrFF~~YP~~eL~~TAvLFG~lI~~~Lv~~~~L~iALr~ILeAlrk 765 (2362)
..+|.+..+++++.+ ...+++....|+--+|| + .++-..++.|+..+.+.++++...+.-|+.-+++.+.+
T Consensus 17 D~~ea~~~l~~L~~~--~~~~~vv~~~i~~~le~-~------~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~d 87 (113)
T smart00544 17 DTDEAVHCLLELKLP--EQHHEVVKVLLTCALEE-K------RTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIED 87 (113)
T ss_pred CHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcC-C------ccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChh
Confidence 678888888888766 47888999999999998 2 34566699999999999999999999999999988876
Done!