BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000085
(2342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|B Chain B, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|C Chain C, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|D Chain D, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
Length = 414
Score = 387 bits (994), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/411 (46%), Positives = 259/411 (63%), Gaps = 21/411 (5%)
Query: 1480 PSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELR----NQEKDRSWLMSSLHQI 1535
P+ +V P V++GT VT+ + F VD E P + + + WL + + I
Sbjct: 8 PAQLVAPSVVVKGTLSVTSSELYFEVDE-EDPNFKKIDPKILAYTEGLHGKWLFTEIRSI 66
Query: 1536 XXXXXXXXXXALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARP----------PHLNDI 1585
ALE+FM +R F+F + +V P P I
Sbjct: 67 FSRRYLLQNTALEIFMANRVAVMFNFPDPA----TVKKVVNFLPRVGVGTSFGLPQTRRI 122
Query: 1586 YLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSS 1645
LA+ P QL K + + +RW EISNFEYLM LNT+AGRSYND+ QYPVFPW++++Y S
Sbjct: 123 SLAS--PRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYES 180
Query: 1646 ENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYL 1705
E LDL P+++RDLSKP+GALNP + F ERY S++D +PKFHYG+HYS+A VL +L
Sbjct: 181 EELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWL 240
Query: 1706 FRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNEN 1765
R+EPFTT + LQGGKFDHADR FS I+ W D SD+KEL+PE +YLPE+ N N
Sbjct: 241 LRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFN 300
Query: 1766 SIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGK 1825
+ + G G + V LPPWA+ +F+H +R+ALES++VS LH+W+DLIFGYKQ+G
Sbjct: 301 NYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGP 360
Query: 1826 EAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPH 1876
EA+ A NVF+Y+TYEG V+++ I+DPV + A + QI FGQTPSQLL PH
Sbjct: 361 EAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPH 411
>pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human
Neurobeachin
pdb|1MI1|B Chain B, Crystal Structure Of The Ph-Beach Domain Of Human
Neurobeachin
Length = 414
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/415 (45%), Positives = 254/415 (61%), Gaps = 19/415 (4%)
Query: 1475 IVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEG--TSELRNQEK-DRSWLMSS 1531
+V P+ ++ P+ V +GT +TT I F VD +S + T L E W S
Sbjct: 3 VVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDSAFKKIDTKVLAYTEGLHGKWXFSE 62
Query: 1532 LHQIXXXXXXXXXXALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARP----------PH 1581
+ + ALE+F +R++ F+F + + +V + P P
Sbjct: 63 IRAVFSRRYLLQNTALEVFXANRTSVXFNFPD----QATVKKVVYSLPRVGVGTSYGLPQ 118
Query: 1582 LNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILS 1641
I LAT P QL K + +RW R EISNFEYL LNT+AGR+YND+ QYPVFPW+L+
Sbjct: 119 ARRISLAT--PRQLYKSSNXTQRWQRREISNFEYLXFLNTIAGRTYNDLNQYPVFPWVLT 176
Query: 1642 DYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTV 1701
+Y SE LDL P ++RDLSKP+GALNP + + ERY +++D P +HY +HYS+A +
Sbjct: 177 NYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTATST 236
Query: 1702 LYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEIL 1761
L +L R+EPFTT + GKFDH DR FS +A +W D SDVKEL+PE +YLPE
Sbjct: 237 LSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRDTSDVKELIPEFYYLPEXF 296
Query: 1762 TNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYK 1821
N N + G + ++ V LPPWA+ P DF+ +R ALES++VS LH+W+DLIFGYK
Sbjct: 297 VNSNGYNLGVREDEVVVNDVDLPPWAKKPEDFVRINRXALESEFVSCQLHQWIDLIFGYK 356
Query: 1822 QRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPH 1876
QRG EA+ A NVF Y+TYEG+V++D I+DPV + A + QI FGQTPSQLL PH
Sbjct: 357 QRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAXEAQIQNFGQTPSQLLIEPH 411
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 1997 RSSAVVSITH--DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV 2054
R ++SI + D + + G +DG I + K L T GH P+ L S DS LV
Sbjct: 163 RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV 222
Query: 2055 TGSQDTTILLWRIHRA 2070
T S D I ++ + A
Sbjct: 223 TASDDGYIKIYDVQHA 238
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 1974 GPGGSGADEWHFPRALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE 2032
GP GS + ++ AL F +G ++ + V + + E + D IK+ + K +
Sbjct: 1 GPLGSTPVKPNY--ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 58
Query: 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067
T SGH ++ +A SSDSN LV+ S D T+ +W +
Sbjct: 59 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 93
Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 50 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 106
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRI 2067
V C + SN +V+GS D ++ +W +
Sbjct: 107 NYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ K L+T H PV+ + + D + +V+ S D +W
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Score = 30.8 bits (68), Expect = 8.7, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS---SDSNFLVTG 2056
+ V + + + I +D ++KL K L+T +GH C+ + + ++V+G
Sbjct: 195 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 254
Query: 2057 SQDTTILLWRIH 2068
S+D + +W +
Sbjct: 255 SEDNLVYIWNLQ 266
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1988 ALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
AL F +G ++ + V + + E + D IK+ + K +T SGH ++ +A
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
SSDSN LV+ S D T+ +W +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDV 97
Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 54 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRI 2067
V C + SN +V+GS D ++ +W +
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ K L+T H PV+ + + D + +V+ S D +W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 30.8 bits (68), Expect = 8.2, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS---SDSNFLVTG 2056
+ V + + + I +D ++KL K L+T +GH C+ + + ++V+G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 2057 SQDTTILLWRIH 2068
S+D + +W +
Sbjct: 259 SEDNLVYIWNLQ 270
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1988 ALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
AL F +G ++ + V + + E + D IK+ + K +T SGH ++ +A
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
SSDSN LV+ S D T+ +W +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDV 97
Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 54 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRI 2067
V C + SN +V+GS D ++ +W +
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ K L+T H PV+ + + D + +V+ S D +W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 30.8 bits (68), Expect = 8.2, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS---SDSNFLVTG 2056
+ V + + + I +D ++KL K L+T +GH C+ + + ++V+G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 2057 SQDTTILLWRIH 2068
S+D + +W +
Sbjct: 259 SEDNLVYIWNLQ 270
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1988 ALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
AL F +G ++ + V + + E + D IK+ + K +T SGH ++ +A
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
SSDSN LV+ S D T+ +W +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDV 97
Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 54 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRI 2067
V C + SN +V+GS D ++ +W +
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ K L+T H PV+ + + D + +V+ S D +W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 30.8 bits (68), Expect = 8.2, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS---SDSNFLVTG 2056
+ V + + + I +D ++KL K L+T +GH C+ + + ++V+G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 2057 SQDTTILLWRIH 2068
S+D + +W +
Sbjct: 259 SEDNLVYIWNLQ 270
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1988 ALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
AL F +G ++ + V + + E + D IK+ + K +T SGH ++ +A
Sbjct: 10 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 69
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
SSDSN LV+ S D T+ +W +
Sbjct: 70 SSDSNLLVSASDDKTLKIWDV 90
Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 47 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 103
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRI 2067
V C + SN +V+GS D ++ +W +
Sbjct: 104 NYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ K L+T H PV+ + + D + +V+ S D +W
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Score = 30.8 bits (68), Expect = 8.7, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS---SDSNFLVTG 2056
+ V + + + I +D ++KL K L+T +GH C+ + + ++V+G
Sbjct: 192 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 251
Query: 2057 SQDTTILLWRIH 2068
S+D + +W +
Sbjct: 252 SEDNLVYIWNLQ 263
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-5-
Nitrophenyl]benzamide
Length = 312
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1988 ALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
AL F +G ++ + V + + E + D IK+ + K +T SGH ++ +A
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
SSDSN LV+ S D T+ +W +
Sbjct: 74 SSDSNLLVSASDDKTLKIWDV 94
Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 51 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 107
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRI 2067
V C + SN +V+GS D ++ +W +
Sbjct: 108 NYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ K L+T H PV+ + + D + +V+ S D +W
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 30.8 bits (68), Expect = 8.7, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS---SDSNFLVTG 2056
+ V + + + I +D ++KL K L+T +GH C+ + + ++V+G
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 2057 SQDTTILLWRIH 2068
S+D + +W +
Sbjct: 256 SEDNLVYIWNLQ 267
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1988 ALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
AL F +G ++ + V + + E + D IK+ + K +T SGH ++ +A
Sbjct: 31 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 90
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
SSDSN LV+ S D T+ +W +
Sbjct: 91 SSDSNLLVSASDDKTLKIWDV 111
Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 68 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 124
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRI 2067
V C + SN +V+GS D ++ +W +
Sbjct: 125 NYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ K L+T H PV+ + + D + +V+ S D +W
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Score = 30.8 bits (68), Expect = 8.9, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS---SDSNFLVTG 2056
+ V + + + I +D ++KL K L+T +GH C+ + + ++V+G
Sbjct: 213 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 272
Query: 2057 SQDTTILLWRIH 2068
S+D + +W +
Sbjct: 273 SEDNLVYIWNLQ 284
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1988 ALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
AL F +G ++ + V + + E + D IK+ + K +T SGH ++ +A
Sbjct: 15 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 74
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
SSDSN LV+ S D T+ +W +
Sbjct: 75 SSDSNLLVSASDDKTLKIWDV 95
Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 52 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 108
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRI 2067
V C + SN +V+GS D ++ +W +
Sbjct: 109 NYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ K L+T H PV+ + + D + +V+ S D +W
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Score = 30.8 bits (68), Expect = 8.9, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS---SDSNFLVTG 2056
+ V + + + I +D ++KL K L+T +GH C+ + + ++V+G
Sbjct: 197 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 256
Query: 2057 SQDTTILLWRIH 2068
S+D + +W +
Sbjct: 257 SEDNLVYIWNLQ 268
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1988 ALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
AL F +G ++ + V + + E + D IK+ + K +T SGH ++ +A
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
SSDSN LV+ S D T+ +W +
Sbjct: 74 SSDSNLLVSASDDKTLKIWDV 94
Score = 40.8 bits (94), Expect = 0.010, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 51 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 107
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRI 2067
V C + SN +V+GS D ++ +W +
Sbjct: 108 NYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ K L+T H PV+ + + D + +V+ S D +W
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 30.8 bits (68), Expect = 8.9, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS---SDSNFLVTG 2056
+ V + + + I +D ++KL K L+T +GH C+ + + ++V+G
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 2057 SQDTTILLWRIH 2068
S+D + +W +
Sbjct: 256 SEDNLVYIWNLQ 267
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1988 ALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
AL F +G ++ + V + + E + D IK+ + K +T SGH ++ +A
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
SSDSN LV+ S D T+ +W +
Sbjct: 80 SSDSNLLVSASDDKTLKIWDV 100
Score = 40.8 bits (94), Expect = 0.010, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 57 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRI 2067
V C + SN +V+GS D ++ +W +
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ K L+T H PV+ + + D + +V+ S D +W
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 30.8 bits (68), Expect = 9.1, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS---SDSNFLVTG 2056
+ V + + + I +D ++KL K L+T +GH C+ + + ++V+G
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 2057 SQDTTILLWRIH 2068
S+D + +W +
Sbjct: 262 SEDNLVYIWNLQ 273
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1988 ALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
AL F +G ++ + V + + E + D IK+ + K +T SGH ++ +A
Sbjct: 19 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 78
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
SSDSN LV+ S D T+ +W +
Sbjct: 79 SSDSNLLVSASDDKTLKIWDV 99
Score = 40.8 bits (94), Expect = 0.010, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 56 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 112
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRI 2067
V C + SN +V+GS D ++ +W +
Sbjct: 113 NYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ K L+T H PV+ + + D + +V+ S D +W
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Score = 30.8 bits (68), Expect = 9.1, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS---SDSNFLVTG 2056
+ V + + + I +D ++KL K L+T +GH C+ + + ++V+G
Sbjct: 201 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 260
Query: 2057 SQDTTILLWRIH 2068
S+D + +W +
Sbjct: 261 SEDNLVYIWNLQ 272
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone
Mark That Supports Euchromatin Maintenance
Length = 318
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1988 ALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
AL F +G ++ + V + + E + D IK+ + K +T SGH ++ +A
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
SSDSN LV+ S D T+ +W +
Sbjct: 80 SSDSNLLVSASDDKTLKIWDV 100
Score = 40.4 bits (93), Expect = 0.010, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 57 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRI 2067
V C + SN +V+GS D ++ +W +
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ K L+T H PV+ + + D + +V+ S D +W
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 30.8 bits (68), Expect = 9.4, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS---SDSNFLVTG 2056
+ V + + + I +D ++KL K L+T +GH C+ + + ++V+G
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 2057 SQDTTILLWRIH 2068
S+D + +W +
Sbjct: 262 SEDNLVYIWNLQ 273
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1988 ALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
AL F +G ++ + V + + E + D IK+ + K +T SGH ++ +A
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
SSDSN LV+ S D T+ +W +
Sbjct: 80 SSDSNLLVSASDDKTLKIWDV 100
Score = 40.4 bits (93), Expect = 0.011, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 57 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRI 2067
V C + SN +V+GS D ++ +W +
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ K L+T H PV+ + + D + +V+ S D +W
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 30.8 bits (68), Expect = 9.6, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS---SDSNFLVTG 2056
+ V + + + I +D ++KL K L+T +GH C+ + + ++V+G
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 2057 SQDTTILLWRIH 2068
S+D + +W +
Sbjct: 262 SEDNLVYIWNLQ 273
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1988 ALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
AL F +G ++ + V + + E + D IK+ + K +T SGH ++ +A
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
SSDSN LV+ S D T+ +W +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDV 97
Score = 41.2 bits (95), Expect = 0.007, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 54 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075
V C + SN +V+GS D ++ +W + +T
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKT 147
Score = 31.2 bits (69), Expect = 6.4, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ L+T H PV+ + + D + +V+ S D +W
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 30.8 bits (68), Expect = 8.8, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS---SDSNFLVTG 2056
+ V + + + I +D ++KL K L+T +GH C+ + + ++V+G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 2057 SQDTTILLWRIH 2068
S+D + +W +
Sbjct: 259 SEDNMVYIWNLQ 270
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1988 ALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
AL F +G ++ + V + + E + D IK+ + K +T SGH ++ +A
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
SSDSN LV+ S D T+ +W +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDV 97
Score = 41.2 bits (95), Expect = 0.007, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 54 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075
V C + SN +V+GS D ++ +W + +T
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKT 147
Score = 31.2 bits (69), Expect = 6.5, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ L+T H PV+ + + D + +V+ S D +W
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
Length = 334
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1988 ALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
AL F +G ++ + V + + E + D IK+ + K +T SGH ++ +A
Sbjct: 36 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 95
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
SSDSN LV+ S D T+ +W +
Sbjct: 96 SSDSNLLVSASDDKTLKIWDV 116
Score = 40.4 bits (93), Expect = 0.013, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 73 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 129
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRI 2067
V C + SN +V+GS D ++ +W +
Sbjct: 130 NYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ K L+T H PV+ + + D + +V+ S D +W
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1988 ALAFASSG-IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
AL F +G ++ + V + + E + D IK+ + K +T SGH ++ +A
Sbjct: 38 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 97
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
SSDSN LV+ S D T+ +W +
Sbjct: 98 SSDSNLLVSASDDKTLKIWDV 118
Score = 40.4 bits (93), Expect = 0.013, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1979 GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038
GA + F + ++ GI V+ + D ++ D ++K+ K L+T GH
Sbjct: 75 GAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 131
Query: 2039 APVTCLALSSDSNFLVTGSQDTTILLWRI 2067
V C + SN +V+GS D ++ +W +
Sbjct: 132 NYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+I G D S+++ K L+T H PV+ + + D + +V+ S D +W
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 1985 FPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCL 2044
F R L + ++ +S H +++ D +IKL G + + T GH V+ +
Sbjct: 142 FERTLKGHTDSVQD---ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV 198
Query: 2045 ALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077
++ + + +V+ S+D TI +W + + +T T
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 231
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 1974 GPGGSGAD--EWHFPRA-LAFASSGIRSSAVVSITHDK-EIITGGHVDGSIKLLTSDGAK 2029
GP G D EW PR +A SG RS I H ++ D +IK+ +
Sbjct: 83 GPLGQKRDPKEW-IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD 141
Query: 2030 TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
T GH V ++ L + S D TI LW
Sbjct: 142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS 2057
S V + +D + I G D +IK+ + + +GH V CL D ++TGS
Sbjct: 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGS 190
Query: 2058 QDTTILLWRIH 2068
D+T+ +W ++
Sbjct: 191 SDSTVRVWDVN 201
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ 2058
+AV + D + I D +IK+ + + + T +GH + CL +V+GS
Sbjct: 257 AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS 314
Query: 2059 DTTILLWRI 2067
D TI LW I
Sbjct: 315 DNTIRLWDI 323
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
Length = 340
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061
V I+ D + G DG+++L T GH V +A SSD+ +V+GS+D T
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 151
Query: 2062 ILLW 2065
I LW
Sbjct: 152 IKLW 155
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074
GH V+ + +SSD F ++GS D T+ LW + T+R
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR 122
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s
Complex Obtained By Docking Homology Models Of The Rna
And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061
V I+ D + G DG+++L T GH V +A SSD+ +V+GS+D T
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128
Query: 2062 ILLW 2065
I LW
Sbjct: 129 IKLW 132
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074
GH V+ + +SSD F ++GS D T+ LW + T+R
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR 99
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASG---HCAPVTCLALSSDSNFLVTGSQDTTILLWR 2066
I+ G+ D ++K+ + L+T G H + VTCL + NF++T S D T+ LW
Sbjct: 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWD 388
Query: 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL 2116
+ R S G G I +S A SR E + VL
Sbjct: 389 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 438
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 1987 RALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
R L + G+ SS + II G D ++K+ ++ + + T GH + V C+ L
Sbjct: 153 RTLVGHTGGVWSSQM-----RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207
Query: 2047 SSDSNFLVTGSQDTTILLWRI 2067
+V+GS+D T+ +W I
Sbjct: 208 HEKR--VVSGSRDATLRVWDI 226
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS 2057
++ V S+ D + G +D SI++ + + T +GH + + + L N LV+G+
Sbjct: 279 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGN 336
Query: 2058 QDTTILLWRI 2067
D+T+ +W I
Sbjct: 337 ADSTVKIWDI 346
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 1987 RALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL 2046
+ L SS +R V+ + D + I D ++KL +G + L+T +GH + V +A
Sbjct: 502 QTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAF 557
Query: 2047 SSDSNFLVTGSQDTTILLW 2065
S D + + S D T+ LW
Sbjct: 558 SPDGQTIASASSDKTVKLW 576
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061
V+ + D + I D ++KL +G + L+T +GH + V +A S D + + S D T
Sbjct: 432 VAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 490
Query: 2062 ILLW 2065
+ LW
Sbjct: 491 VKLW 494
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061
V+ + D + I D ++KL +G + L+T +GH + V +A S D + + S D T
Sbjct: 63 VAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 121
Query: 2062 ILLW 2065
+ LW
Sbjct: 122 VKLW 125
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061
V+ + D + I D ++KL +G + L+T +GH + V +A S D + + S D T
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 244
Query: 2062 ILLW 2065
+ LW
Sbjct: 245 VKLW 248
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061
V+ + D + I D ++KL +G + L+T +GH + V +A S D + + S D T
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408
Query: 2062 ILLW 2065
+ LW
Sbjct: 409 VKLW 412
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 1993 SSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNF 2052
SS +R V+ + D + I D ++KL +G + L+T +GH + V +A S D
Sbjct: 16 SSSVRG---VAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 2053 LVTGSQDTTILLW 2065
+ + S D T+ LW
Sbjct: 72 IASASDDKTVKLW 84
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061
V+ + D + I D ++KL +G + L+T +GH + V +A S D + + S D T
Sbjct: 145 VAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 203
Query: 2062 ILLW 2065
+ LW
Sbjct: 204 VKLW 207
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 2007 DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
D + I D ++KL +G + L+T +GH + V +A S D + + S D T+ LW
Sbjct: 273 DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 2004 ITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTIL 2063
I+HD + D + K+ + D L GH V C A S DS L TG + I
Sbjct: 1099 ISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIR 1158
Query: 2064 LWRI 2067
+W +
Sbjct: 1159 IWNV 1162
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 2003 SITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTI 2062
+ D + I D ++++ ++ + L H V C A S+D F+ T S D +
Sbjct: 628 CFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKV 687
Query: 2063 LLW 2065
+W
Sbjct: 688 KIW 690
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 15/117 (12%)
Query: 1957 GKASASPASGTFLRMFKGPGGSGADEW--HFPRALAFASSGIRSSAVVSITHDKEIITGG 2014
G+ AS + L++FK G E H L A S D I
Sbjct: 633 GQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFST-----------DDRFIATC 681
Query: 2015 HVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSN--FLVTGSQDTTILLWRIHR 2069
VD +K+ S + + T H V C ++ S+ L TGS D + LW +++
Sbjct: 682 SVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQ 738
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 2011 ITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067
I D ++K+ K T +GH V+ +A+S D + +G +D +LLW +
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061
V ++ D + G DG ++L + GH V +A S D+ +V+ S+D T
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 2062 ILLW 2065
I LW
Sbjct: 496 IKLW 499
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 1984 HFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET--ASGHCAPV 2041
H A A+ + +VS + DK II KL D A + +GH V
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIIL-------WKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 2042 TCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074
+ LSSD F ++GS D + LW + ++R
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR 466
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 48/157 (30%)
Query: 2009 EIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW--- 2065
E + G DG+IK++ + + GH V + ++D L++ S+D+ I +W
Sbjct: 981 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1040
Query: 2066 ------------------------------------------RIHRAFTSRTGTIEPSSG 2083
RI R FT GT+ S
Sbjct: 1041 TGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTV-LSCA 1099
Query: 2084 MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHH 2120
+ + SST A+ +A K + P+H L+GH+
Sbjct: 1100 ISSDATKF-SSTSADKTA-KIWSFDLLSPLHELKGHN 1134
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 2003 SITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTI 2062
+ D + I D ++++ ++ + L H V C A SSD +++ T S D +
Sbjct: 629 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 688
Query: 2063 LLW 2065
+W
Sbjct: 689 KIW 691
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061
+I+ D + D + K+ + D L GH V C A S D L TG +
Sbjct: 1098 CAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE 1157
Query: 2062 ILLWRI 2067
I +W +
Sbjct: 1158 IRIWNV 1163
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 48/157 (30%)
Query: 2009 EIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW--- 2065
E + G DG+IK++ + + GH V + ++D L++ S+D+ I +W
Sbjct: 974 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1033
Query: 2066 ------------------------------------------RIHRAFTSRTGTIEPSSG 2083
RI R FT GT+ S
Sbjct: 1034 TGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTV-LSCA 1092
Query: 2084 MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHH 2120
+ + SST A+ +A K + P+H L+GH+
Sbjct: 1093 ISSDATKF-SSTSADKTA-KIWSFDLLSPLHELKGHN 1127
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 2003 SITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTI 2062
+ D + I D ++++ ++ + L H V C A SSD +++ T S D +
Sbjct: 622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 681
Query: 2063 LLW 2065
+W
Sbjct: 682 KIW 684
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061
+I+ D + D + K+ + D L GH V C A S D L TG +
Sbjct: 1091 CAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE 1150
Query: 2062 ILLWRI 2067
I +W +
Sbjct: 1151 IRIWNV 1156
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 2028 AKTLETASGHCAPVTCLALSSDSNF-LVTGSQDTTILLWRI 2067
+K T H A V CL+ + S F L TGS D T+ LW +
Sbjct: 267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 307
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 2028 AKTLETASGHCAPVTCLALSSDSNF-LVTGSQDTTILLWRI 2067
+K T H A V CL+ + S F L TGS D T+ LW +
Sbjct: 271 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 311
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 2028 AKTLETASGHCAPVTCLALSSDSNF-LVTGSQDTTILLWRI 2067
+K T H A V CL+ + S F L TGS D T+ LW +
Sbjct: 269 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 309
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSN--FLVTGSQDTTILLWRI 2067
I+ G D ++++ GH + V CL + N ++VTGS+D T+ +W++
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 1983 WHFPRALAFASS--GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAP 2040
W+ P+ + ++ G +S + + + + G D I++ S K L SGH
Sbjct: 105 WYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG 164
Query: 2041 VTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070
V L + LV+GS D T+ +W I +
Sbjct: 165 VWALKYAH-GGILVSGSTDRTVRVWDIKKG 193
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 2024 TSDGAKTLETASGHCAPVTCLALSSDSNF-LVTGSQDTTILLWRI 2067
+++ +K + H A V CL+ + S F L TGS D T+ LW +
Sbjct: 259 SNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 2007 DKEIITGGHVDGSIKLLTSDGAKTLE-------TASGHCAPVTCLALSSDSNFLVTGSQD 2059
D + I G +D ++++ S+ +E + +GH V + + D +V+GS D
Sbjct: 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277
Query: 2060 TTILLWRIHRAFTSRTGTIEPSSG 2083
++ LW + A +++ + P+SG
Sbjct: 278 RSVKLWNLQNA-NNKSDSKTPNSG 300
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%)
Query: 1986 PRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLA 2045
PR A +S + ++I+ D ++ DG+I + + GH +C+
Sbjct: 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190
Query: 2046 LSSDSNFLVTGSQDTTILLWRI 2067
+S+D L TG D T+ W +
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDL 212
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 1994 SGIRSSAVVSITHDKEIITGGH---------VDGSIKLLTSDGAKTLETA-----SGHCA 2039
SG S V +I H EI + D S K++ A E A + H A
Sbjct: 478 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 537
Query: 2040 PVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069
V C++ S D+ L TGS D ++++W +++
Sbjct: 538 KVACVSWSPDNVRLATGSLDNSVIVWNMNK 567
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 2042 TCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078
+C+ALS+D F+ G QD+ + ++++ A S TI
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI 488
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 32.3 bits (72), Expect = 3.1, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSN--FLVTGSQDTTILLWRI 2067
I+ G D ++++ GH + V CL + N ++VTGS+D T+ +W++
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Score = 32.0 bits (71), Expect = 4.3, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 1983 WHFPRALAFASS--GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAP 2040
W+ P+ + ++ G +S + + + + G D I++ S K L SGH
Sbjct: 105 WYNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGG 164
Query: 2041 VTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070
V L + LV+GS D T+ +W I +
Sbjct: 165 VWALKYAH-GGILVSGSTDRTVRVWDIKKG 193
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 1982 EWHFPRALAFASSGIRSSAVVSI--THDKEIITGGHVDGSIKLLTSDGAKTLETASGHCA 2039
E P AL+ ASSG ++ V + +HD I G +G ++L GA L + H A
Sbjct: 93 ELRHPFALS-ASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA-LLNVLNFHRA 150
Query: 2040 PVTCLALSSDSNFLVTGSQDTTILLWRI 2067
P+ + + D +++ + +LW +
Sbjct: 151 PIVSVKWNKDGTHIISMDVENVTILWNV 178
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL--SSDSNFLVTG 2056
SA D +I+T DG+ L + + L++ GH A V CL L S N V+G
Sbjct: 158 SACSFTNSDMQILTASG-DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216
Query: 2057 SQDTTILLW 2065
D ++W
Sbjct: 217 GCDKKAMVW 225
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.0 bits (71), Expect = 3.8, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 1994 SGIRSSAV--VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSN 2051
SGI + V +++ D I+ + DG IKL+ L T GH + V C+ L + +
Sbjct: 180 SGIHNDVVRHLAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD 238
Query: 2052 FLVTGSQDTTILLW 2065
+V+ +D T+ +W
Sbjct: 239 -IVSCGEDRTVRIW 251
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 2029 KTLETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRI 2067
K + GH APV +A + N + +GS+D T+++W I
Sbjct: 72 KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEI 111
>pdb|1J1D|B Chain B, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|E Chain E, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|B Chain B, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|E Chain E, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 106
Score = 32.0 bits (71), Expect = 4.4, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 1362 HFGAAANYEDQIERKPGQENVINPSNAPIVAA--EAISMEAVNEDDEQTENDNLDDRVYN 1419
HFG + Q ERK G+ I+A + ++++ +NED + + L +YN
Sbjct: 1 HFGGYIQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYN 60
Query: 1420 LDNVGEDQTTVSEKIEQ 1436
L+ ++ + EK +Q
Sbjct: 61 LE---AEKFDLQEKFKQ 74
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 2029 KTLETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRI 2067
K + GH APV +A + N + +GS+D T+++W I
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI 111
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A
5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 2032 ETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSR 2074
E SGH A V L+++S ++N ++GS DTT+ LW + TSR
Sbjct: 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR--ITSR 240
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
H ++CL LSSD + L TGS D + +W
Sbjct: 343 HEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 1557 FFFDFGSTEGRRNAYRAI----VQARPPHLNDIYLATQRPEQLLKRTQLMERWARWEISN 1612
+F++ G E R++A I V A ++DIY E+L + T L+ RW I
Sbjct: 266 YFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQ 325
Query: 1613 FEYLMQLNTLAGRSYNDITQYPV 1635
MQL LA ++ D T Y V
Sbjct: 326 LPDYMQLCFLALNNFVDDTSYDV 348
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 2036 GHCAPVTCLALSSDSNF-LVTGSQDTTILLWRI 2067
H A V CL+ + S F L TGS D T+ LW +
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDL 305
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 2036 GHCAPVTCLALSSDSNF-LVTGSQDTTILLWRI 2067
H A V CL+ + S F L TGS D T+ LW +
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDL 305
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg
Particle Of The Proteasome
Length = 417
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 2014 GHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS 2073
G +G IK+L S+ E H + +T L L++ SQD + +W +
Sbjct: 112 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 171
Query: 2074 RT 2075
RT
Sbjct: 172 RT 173
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 2014 GHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS 2073
G +G IK+L S+ E H + +T L L++ SQD + +W +
Sbjct: 115 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 174
Query: 2074 RT 2075
RT
Sbjct: 175 RT 176
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And
Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In
Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+T T GH A + + +DS LV+ SQD +++W
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW 82
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+T T GH A + + +DS LV+ SQD +++W
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW 93
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In
Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+T T GH A + + +DS LV+ SQD +++W
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,109,895
Number of Sequences: 62578
Number of extensions: 2245229
Number of successful extensions: 5467
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 5209
Number of HSP's gapped (non-prelim): 263
length of query: 2342
length of database: 14,973,337
effective HSP length: 115
effective length of query: 2227
effective length of database: 7,776,867
effective search space: 17319082809
effective search space used: 17319082809
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)