Query 000085
Match_columns 2342
No_of_seqs 1059 out of 4423
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 17:22:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1787 Kinase A-anchor protei 100.0 5E-131 1E-135 1290.4 23.0 974 626-2150 1-1001(1126)
2 cd06071 Beach BEACH (Beige and 100.0 7.2E-96 2E-100 858.7 21.1 275 1602-1879 1-275 (275)
3 PF02138 Beach: Beige/BEACH do 100.0 1.3E-92 2.8E-97 832.6 18.7 270 1602-1879 1-270 (270)
4 KOG1786 Lysosomal trafficking 100.0 4.4E-55 9.4E-60 590.2 4.8 358 1525-1883 251-630 (1081)
5 KOG1787 Kinase A-anchor protei 100.0 6.3E-43 1.4E-47 461.0 1.8 652 1103-1880 462-1121(1126)
6 KOG1786 Lysosomal trafficking 100.0 1.9E-38 4.1E-43 429.4 5.3 262 1523-1815 819-1081(1081)
7 KOG0271 Notchless-like WD40 re 100.0 2E-33 4.4E-38 327.1 23.5 312 1988-2314 110-479 (480)
8 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-31 3.6E-36 315.6 23.6 277 1995-2314 174-458 (459)
9 KOG0279 G protein beta subunit 100.0 2.8E-28 6.2E-33 277.1 28.9 266 1958-2315 29-312 (315)
10 KOG0286 G-protein beta subunit 100.0 3.9E-27 8.4E-32 268.8 30.3 268 1955-2314 65-343 (343)
11 KOG0318 WD40 repeat stress pro 100.0 6.4E-27 1.4E-31 281.9 31.2 311 1959-2319 162-563 (603)
12 KOG0271 Notchless-like WD40 re 100.0 1.9E-27 4.1E-32 277.6 25.9 298 1915-2222 110-471 (480)
13 KOG0272 U4/U6 small nuclear ri 100.0 8.9E-28 1.9E-32 284.2 21.4 262 1952-2223 182-451 (459)
14 KOG0315 G-protein beta subunit 100.0 1.1E-26 2.3E-31 260.3 27.3 271 1956-2319 9-291 (311)
15 KOG0273 Beta-transducin family 99.9 2.8E-26 6.1E-31 274.1 29.1 311 1959-2315 193-522 (524)
16 KOG0291 WD40-repeat-containing 99.9 4.3E-25 9.3E-30 273.9 35.7 341 1953-2336 104-533 (893)
17 KOG0263 Transcription initiati 99.9 1.6E-26 3.5E-31 290.8 22.3 239 1997-2317 379-650 (707)
18 KOG0284 Polyadenylation factor 99.9 1.8E-26 4E-31 271.9 18.2 288 1926-2316 90-380 (464)
19 cd00200 WD40 WD40 domain, foun 99.9 2.2E-24 4.7E-29 247.0 32.8 275 1997-2314 10-289 (289)
20 KOG0266 WD40 repeat-containing 99.9 1.3E-24 2.8E-29 278.0 30.4 275 1953-2316 167-454 (456)
21 KOG0296 Angio-associated migra 99.9 1.6E-24 3.4E-29 253.5 27.2 312 1995-2316 63-398 (399)
22 KOG0263 Transcription initiati 99.9 7.8E-25 1.7E-29 275.7 25.6 289 1955-2304 388-703 (707)
23 KOG0318 WD40 repeat stress pro 99.9 2.4E-23 5.2E-28 251.4 34.4 316 1953-2316 198-602 (603)
24 KOG0291 WD40-repeat-containing 99.9 6.6E-24 1.4E-28 263.5 30.1 300 1960-2318 280-614 (893)
25 KOG0275 Conserved WD40 repeat- 99.9 3.3E-25 7.2E-30 253.2 16.7 274 1999-2314 216-507 (508)
26 KOG0295 WD40 repeat-containing 99.9 1.6E-24 3.5E-29 253.1 22.4 277 1996-2314 108-404 (406)
27 KOG0281 Beta-TrCP (transducin 99.9 4.3E-25 9.3E-30 254.7 16.6 271 1949-2317 199-478 (499)
28 KOG0279 G protein beta subunit 99.9 1.6E-23 3.5E-28 238.7 27.4 234 1999-2317 18-263 (315)
29 KOG0266 WD40 repeat-containing 99.9 1.9E-23 4.2E-28 267.3 31.3 243 1995-2318 158-411 (456)
30 KOG0319 WD40-repeat-containing 99.9 1.2E-23 2.6E-28 261.9 28.2 347 1952-2318 69-579 (775)
31 KOG0645 WD40 repeat protein [G 99.9 7E-23 1.5E-27 232.6 28.3 270 1957-2315 27-310 (312)
32 KOG0293 WD40 repeat-containing 99.9 1.1E-23 2.4E-28 248.0 22.0 279 1997-2317 225-514 (519)
33 KOG0285 Pleiotropic regulator 99.9 2.8E-23 6E-28 241.4 23.2 302 1983-2334 141-454 (460)
34 KOG0265 U5 snRNP-specific prot 99.9 4.8E-23 1E-27 236.6 23.9 265 1999-2314 50-336 (338)
35 PLN00181 protein SPA1-RELATED; 99.9 6E-22 1.3E-26 269.5 37.2 275 1955-2315 493-792 (793)
36 KOG0286 G-protein beta subunit 99.9 3.2E-22 7E-27 228.9 28.7 243 1997-2315 56-302 (343)
37 KOG0282 mRNA splicing factor [ 99.9 8.6E-24 1.9E-28 254.2 15.7 273 1998-2314 216-503 (503)
38 KOG0319 WD40-repeat-containing 99.9 2.7E-22 5.8E-27 250.0 28.4 304 1964-2318 300-621 (775)
39 KOG0273 Beta-transducin family 99.9 1.3E-22 2.7E-27 243.1 23.9 279 1997-2318 179-484 (524)
40 KOG0313 Microtubule binding pr 99.9 3.8E-22 8.3E-27 234.4 27.1 294 1957-2316 115-418 (423)
41 KOG0306 WD40-repeat-containing 99.9 3.3E-22 7.2E-27 248.5 26.3 341 1954-2316 74-580 (888)
42 KOG0284 Polyadenylation factor 99.9 4.1E-23 8.9E-28 243.9 14.8 236 1998-2316 98-337 (464)
43 KOG0295 WD40 repeat-containing 99.9 3.8E-22 8.2E-27 233.6 21.8 262 2029-2318 99-366 (406)
44 KOG0276 Vesicle coat complex C 99.9 5.2E-22 1.1E-26 242.6 21.9 357 1966-2337 34-402 (794)
45 KOG0288 WD40 repeat protein Ti 99.9 3.9E-22 8.5E-27 236.1 19.7 269 1955-2314 185-459 (459)
46 KOG0306 WD40-repeat-containing 99.9 3.1E-21 6.7E-26 240.0 27.6 285 1951-2316 378-664 (888)
47 KOG0973 Histone transcription 99.9 1.9E-21 4.2E-26 251.9 26.1 298 1955-2317 23-356 (942)
48 KOG0316 Conserved WD40 repeat- 99.9 6E-21 1.3E-25 213.0 26.1 267 1956-2314 28-297 (307)
49 KOG0315 G-protein beta subunit 99.9 3.7E-21 8E-26 216.2 24.5 228 2010-2318 12-247 (311)
50 KOG0281 Beta-TrCP (transducin 99.9 1E-22 2.2E-27 235.2 12.3 228 1997-2316 198-428 (499)
51 KOG0278 Serine/threonine kinas 99.9 7.9E-22 1.7E-26 221.1 18.8 276 1997-2318 15-299 (334)
52 KOG0643 Translation initiation 99.9 1.1E-21 2.3E-26 222.3 18.7 291 1995-2316 9-317 (327)
53 KOG0283 WD40 repeat-containing 99.9 3.1E-21 6.7E-26 245.5 23.6 239 1995-2318 266-578 (712)
54 KOG0292 Vesicle coat complex C 99.9 6.2E-21 1.3E-25 239.2 25.5 273 2000-2316 13-321 (1202)
55 cd00200 WD40 WD40 domain, foun 99.9 3.7E-20 8E-25 212.1 29.7 257 1956-2222 20-281 (289)
56 PLN00181 protein SPA1-RELATED; 99.9 3.4E-20 7.3E-25 252.5 34.4 236 1997-2316 484-738 (793)
57 KOG0276 Vesicle coat complex C 99.9 4.3E-21 9.3E-26 234.6 22.1 240 1998-2319 15-260 (794)
58 KOG0316 Conserved WD40 repeat- 99.9 5.1E-21 1.1E-25 213.5 20.6 235 1997-2315 18-256 (307)
59 PTZ00421 coronin; Provisional 99.9 5.6E-20 1.2E-24 236.2 33.1 248 2001-2318 25-292 (493)
60 PTZ00421 coronin; Provisional 99.9 6.6E-20 1.4E-24 235.5 33.7 222 1997-2298 76-315 (493)
61 KOG0274 Cdc4 and related F-box 99.9 2.8E-20 6.1E-25 239.6 28.5 266 1957-2319 218-485 (537)
62 KOG0640 mRNA cleavage stimulat 99.9 9.4E-21 2E-25 217.1 18.8 277 1998-2314 114-424 (430)
63 KOG0973 Histone transcription 99.9 5.1E-20 1.1E-24 239.0 26.9 279 1999-2337 16-339 (942)
64 PTZ00420 coronin; Provisional 99.8 3.9E-19 8.4E-24 229.9 33.7 236 2013-2317 49-294 (568)
65 KOG0285 Pleiotropic regulator 99.8 2.1E-20 4.5E-25 217.8 18.7 245 2029-2318 142-391 (460)
66 KOG0292 Vesicle coat complex C 99.8 1.2E-19 2.6E-24 227.8 26.7 335 1959-2318 23-399 (1202)
67 KOG0305 Anaphase promoting com 99.8 1.7E-19 3.7E-24 225.6 27.9 263 1963-2317 193-462 (484)
68 KOG0310 Conserved WD40 repeat- 99.8 1.7E-19 3.6E-24 218.2 25.1 232 1999-2314 71-307 (487)
69 KOG0645 WD40 repeat protein [G 99.8 8.2E-19 1.8E-23 199.9 28.7 232 1998-2315 16-260 (312)
70 KOG1539 WD repeat protein [Gen 99.8 3.6E-19 7.7E-24 224.4 28.2 344 1960-2319 175-609 (910)
71 KOG0265 U5 snRNP-specific prot 99.8 1.7E-19 3.7E-24 207.7 23.1 261 1955-2225 57-331 (338)
72 KOG0268 Sof1-like rRNA process 99.8 4.9E-20 1.1E-24 215.5 16.3 279 1987-2315 60-344 (433)
73 KOG0641 WD40 repeat protein [G 99.8 2.6E-18 5.6E-23 190.1 28.8 276 1998-2316 34-349 (350)
74 KOG1446 Histone H3 (Lys4) meth 99.8 2.5E-18 5.3E-23 200.3 29.9 239 1999-2319 17-265 (311)
75 KOG0772 Uncharacterized conser 99.8 3E-19 6.4E-24 215.4 22.7 292 1993-2319 164-490 (641)
76 KOG1408 WD40 repeat protein [F 99.8 9.4E-19 2E-23 215.5 25.8 239 1998-2317 461-714 (1080)
77 KOG0301 Phospholipase A2-activ 99.8 1.1E-18 2.4E-23 216.9 26.2 263 1954-2316 22-288 (745)
78 PTZ00420 coronin; Provisional 99.8 5.1E-18 1.1E-22 219.6 33.0 245 1963-2298 50-318 (568)
79 KOG0294 WD40 repeat-containing 99.8 2.6E-18 5.6E-23 198.9 25.6 237 1994-2317 41-282 (362)
80 KOG0289 mRNA splicing factor [ 99.8 1.8E-18 3.9E-23 206.1 24.6 242 1992-2314 215-460 (506)
81 KOG0647 mRNA export protein (c 99.8 2.7E-18 5.8E-23 197.9 24.7 238 1995-2316 26-281 (347)
82 KOG0308 Conserved WD40 repeat- 99.8 1.3E-18 2.7E-23 214.9 22.6 341 1955-2316 35-393 (735)
83 KOG1407 WD40 repeat protein [F 99.8 4.4E-18 9.5E-23 193.0 24.5 272 1999-2315 23-310 (313)
84 KOG1446 Histone H3 (Lys4) meth 99.8 1.4E-17 3E-22 194.1 29.0 266 1955-2314 24-301 (311)
85 KOG0308 Conserved WD40 repeat- 99.8 6.6E-19 1.4E-23 217.4 18.4 233 2006-2318 35-287 (735)
86 KOG0293 WD40 repeat-containing 99.8 6.8E-19 1.5E-23 208.1 17.5 260 1955-2221 234-502 (519)
87 KOG0300 WD40 repeat-containing 99.8 2E-18 4.4E-23 198.0 20.8 284 1988-2320 143-432 (481)
88 KOG1273 WD40 repeat protein [G 99.8 4.7E-18 1E-22 196.1 23.3 289 1985-2317 13-323 (405)
89 KOG0288 WD40 repeat protein Ti 99.8 5.5E-19 1.2E-23 209.7 14.9 264 1990-2341 172-448 (459)
90 KOG0274 Cdc4 and related F-box 99.8 4.6E-18 9.9E-23 219.3 24.3 231 1999-2318 211-443 (537)
91 KOG0282 mRNA splicing factor [ 99.8 6.4E-19 1.4E-23 212.7 14.9 240 2029-2318 205-464 (503)
92 KOG0296 Angio-associated migra 99.8 7.7E-18 1.7E-22 198.0 23.0 261 1955-2225 116-391 (399)
93 KOG0646 WD40 repeat protein [G 99.8 4.4E-18 9.5E-23 205.1 21.2 227 1999-2298 84-331 (476)
94 cd01201 Neurobeachin Neurobeac 99.8 3.2E-19 6.9E-24 181.6 8.3 104 1473-1580 1-107 (108)
95 KOG0289 mRNA splicing factor [ 99.8 3.6E-17 7.8E-22 195.1 25.9 269 1958-2315 232-505 (506)
96 KOG0299 U3 snoRNP-associated p 99.8 9.3E-18 2E-22 201.9 21.0 241 1995-2318 141-412 (479)
97 KOG0313 Microtubule binding pr 99.8 1.4E-17 3E-22 196.5 21.9 247 2008-2336 115-402 (423)
98 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 4.5E-16 9.7E-21 184.7 35.0 282 1958-2336 2-296 (300)
99 KOG0639 Transducin-like enhanc 99.8 9.5E-18 2.1E-22 201.3 20.2 273 1998-2315 421-703 (705)
100 KOG0640 mRNA cleavage stimulat 99.8 3.8E-18 8.2E-23 196.0 15.0 223 2033-2318 107-337 (430)
101 KOG0643 Translation initiation 99.8 5.3E-17 1.1E-21 184.7 23.0 206 2033-2319 5-223 (327)
102 KOG0299 U3 snoRNP-associated p 99.8 1.3E-16 2.8E-21 192.1 26.6 277 1952-2313 149-453 (479)
103 KOG0283 WD40 repeat-containing 99.8 5.3E-17 1.2E-21 207.3 24.3 243 2030-2315 258-531 (712)
104 KOG0310 Conserved WD40 repeat- 99.8 5E-17 1.1E-21 197.0 22.6 238 1997-2318 27-270 (487)
105 KOG2096 WD40 repeat protein [G 99.7 4.2E-17 9.1E-22 188.4 20.3 280 2032-2318 80-405 (420)
106 KOG1274 WD40 repeat protein [G 99.7 1.9E-16 4.1E-21 202.2 27.2 265 1954-2314 22-298 (933)
107 KOG0277 Peroxisomal targeting 99.7 3.7E-17 7.9E-22 185.0 17.9 233 2000-2315 64-308 (311)
108 KOG2055 WD40 repeat protein [G 99.7 1.6E-16 3.5E-21 191.0 24.1 278 1998-2315 215-511 (514)
109 KOG1036 Mitotic spindle checkp 99.7 2E-16 4.3E-21 183.7 24.0 259 1999-2306 16-294 (323)
110 KOG2106 Uncharacterized conser 99.7 1.1E-15 2.4E-20 184.6 31.2 308 1955-2318 210-522 (626)
111 KOG0267 Microtubule severing p 99.7 4.6E-18 1E-22 211.8 10.7 227 2000-2308 32-260 (825)
112 KOG0275 Conserved WD40 repeat- 99.7 4.9E-17 1.1E-21 186.9 17.5 270 1951-2225 219-502 (508)
113 KOG1539 WD repeat protein [Gen 99.7 4E-16 8.7E-21 197.3 27.1 308 1959-2318 216-650 (910)
114 KOG0772 Uncharacterized conser 99.7 1.1E-16 2.4E-21 193.5 21.2 267 1955-2225 177-480 (641)
115 KOG0305 Anaphase promoting com 99.7 2E-16 4.3E-21 198.4 22.9 250 2002-2336 183-444 (484)
116 KOG0300 WD40 repeat-containing 99.7 2.2E-16 4.7E-21 181.6 20.0 265 1959-2317 162-477 (481)
117 PF06469 DUF1088: Domain of Un 99.7 9.4E-18 2E-22 181.1 8.2 107 1260-1369 26-132 (169)
118 KOG1407 WD40 repeat protein [F 99.7 7.9E-16 1.7E-20 174.9 23.9 256 1956-2223 31-293 (313)
119 KOG4283 Transcription-coupled 99.7 6.2E-16 1.3E-20 177.3 20.3 283 1998-2315 45-364 (397)
120 KOG1408 WD40 repeat protein [F 99.7 2.6E-15 5.7E-20 185.6 27.0 363 1952-2318 265-673 (1080)
121 KOG0277 Peroxisomal targeting 99.7 6.5E-16 1.4E-20 175.0 19.8 218 2016-2316 36-265 (311)
122 KOG1274 WD40 repeat protein [G 99.7 2.2E-15 4.7E-20 192.8 26.8 240 1992-2317 12-263 (933)
123 KOG1538 Uncharacterized conser 99.7 1.6E-15 3.4E-20 186.1 23.3 269 1998-2315 14-292 (1081)
124 PF14844 PH_BEACH: PH domain a 99.7 3.3E-17 7.2E-22 170.2 6.9 101 1474-1574 1-105 (106)
125 KOG0647 mRNA export protein (c 99.7 3.7E-15 8E-20 172.4 23.9 257 1958-2307 41-315 (347)
126 KOG0301 Phospholipase A2-activ 99.7 1.3E-15 2.7E-20 190.1 21.4 237 1986-2316 7-249 (745)
127 KOG0646 WD40 repeat protein [G 99.7 4.1E-15 8.9E-20 179.8 24.3 242 2009-2318 51-309 (476)
128 KOG1063 RNA polymerase II elon 99.7 4.3E-15 9.3E-20 185.3 25.1 314 1957-2316 279-699 (764)
129 KOG0278 Serine/threonine kinas 99.7 4.2E-16 9.1E-21 175.7 14.1 255 1956-2222 28-287 (334)
130 KOG0264 Nucleosome remodeling 99.7 2.6E-15 5.7E-20 181.5 21.3 241 2002-2316 130-404 (422)
131 KOG0321 WD40 repeat-containing 99.6 4.6E-15 1E-19 183.6 21.7 294 1959-2315 66-390 (720)
132 KOG2096 WD40 repeat protein [G 99.6 9.3E-15 2E-19 169.3 22.8 259 1955-2221 96-392 (420)
133 KOG0269 WD40 repeat-containing 99.6 1.6E-15 3.4E-20 191.0 17.6 238 1999-2315 90-339 (839)
134 KOG1063 RNA polymerase II elon 99.6 4.1E-15 8.9E-20 185.4 20.8 314 1960-2317 162-603 (764)
135 KOG0267 Microtubule severing p 99.6 3.3E-16 7.1E-21 195.5 11.3 216 1957-2221 40-257 (825)
136 KOG1332 Vesicle coat complex C 99.6 4.3E-15 9.2E-20 167.8 17.0 234 2002-2314 17-284 (299)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.7E-13 3.7E-18 162.8 30.3 227 2009-2318 2-239 (300)
138 KOG0641 WD40 repeat protein [G 99.6 6.2E-14 1.3E-18 155.9 24.2 263 2037-2341 31-337 (350)
139 KOG0639 Transducin-like enhanc 99.6 4.4E-15 9.5E-20 178.8 15.7 231 1950-2189 470-703 (705)
140 KOG2048 WD40 repeat protein [G 99.6 8.4E-14 1.8E-18 174.1 27.1 274 1998-2317 27-320 (691)
141 KOG0294 WD40 repeat-containing 99.6 4.9E-14 1.1E-18 164.0 23.3 245 1956-2295 52-306 (362)
142 KOG2445 Nuclear pore complex c 99.6 9.1E-14 2E-18 161.3 25.4 266 1996-2315 13-317 (361)
143 KOG1332 Vesicle coat complex C 99.6 1.4E-14 2.9E-19 163.8 18.2 229 1956-2191 22-287 (299)
144 KOG0264 Nucleosome remodeling 99.6 3.9E-14 8.4E-19 171.6 22.0 223 1957-2220 137-391 (422)
145 KOG2106 Uncharacterized conser 99.6 1.5E-13 3.3E-18 166.5 26.9 308 1953-2315 253-625 (626)
146 KOG1009 Chromatin assembly com 99.6 7E-14 1.5E-18 167.0 22.2 290 1959-2316 28-372 (434)
147 KOG0268 Sof1-like rRNA process 99.6 6.8E-15 1.5E-19 173.0 11.1 256 2031-2336 59-328 (433)
148 KOG0650 WD40 repeat nucleolar 99.6 1.2E-13 2.5E-18 170.1 22.0 306 1999-2314 403-733 (733)
149 KOG4378 Nuclear protein COP1 [ 99.6 9E-14 2E-18 167.7 19.8 248 1960-2214 50-305 (673)
150 KOG0269 WD40 repeat-containing 99.6 3.6E-14 7.7E-19 179.0 16.3 224 1957-2225 100-333 (839)
151 COG2319 FOG: WD40 repeat [Gene 99.5 6E-12 1.3E-16 150.6 34.1 274 1956-2318 76-361 (466)
152 KOG0642 Cell-cycle nuclear pro 99.5 4.4E-14 9.6E-19 174.0 15.9 245 1995-2316 293-561 (577)
153 KOG4378 Nuclear protein COP1 [ 99.5 2.6E-13 5.7E-18 163.8 20.7 266 1963-2319 8-283 (673)
154 KOG2048 WD40 repeat protein [G 99.5 8.9E-13 1.9E-17 165.2 25.9 344 1957-2314 37-409 (691)
155 KOG4283 Transcription-coupled 99.5 2.5E-13 5.4E-18 156.3 17.7 231 2035-2319 40-279 (397)
156 KOG4328 WD40 protein [Function 99.5 4.3E-13 9.3E-18 162.0 20.5 277 1997-2316 187-495 (498)
157 KOG1034 Transcriptional repres 99.5 4.9E-14 1.1E-18 164.5 12.1 252 2010-2314 107-381 (385)
158 KOG0307 Vesicle coat complex C 99.5 8.8E-14 1.9E-18 182.2 14.6 239 2001-2320 69-331 (1049)
159 COG2319 FOG: WD40 repeat [Gene 99.5 4.1E-11 9E-16 143.4 36.0 307 1959-2317 125-443 (466)
160 KOG0270 WD40 repeat-containing 99.5 7.4E-13 1.6E-17 159.8 19.0 229 2007-2318 191-451 (463)
161 KOG0302 Ribosome Assembly prot 99.5 8.1E-13 1.8E-17 156.5 18.8 198 2001-2315 156-377 (440)
162 KOG1188 WD40 repeat protein [G 99.5 7.8E-13 1.7E-17 155.5 18.0 270 2009-2316 41-346 (376)
163 KOG1273 WD40 repeat protein [G 99.5 1.8E-12 4E-17 150.5 20.7 193 2041-2316 26-226 (405)
164 KOG0303 Actin-binding protein 99.5 1.6E-12 3.5E-17 154.5 19.5 213 2032-2317 75-295 (472)
165 KOG1036 Mitotic spindle checkp 99.5 3.4E-12 7.3E-17 149.0 21.8 248 1958-2221 26-293 (323)
166 KOG0644 Uncharacterized conser 99.5 1.6E-13 3.4E-18 173.1 10.7 240 1994-2318 188-470 (1113)
167 KOG1445 Tumor-specific antigen 99.4 1.7E-11 3.7E-16 150.9 23.9 112 1956-2070 91-202 (1012)
168 KOG0771 Prolactin regulatory e 99.4 3.4E-12 7.4E-17 154.1 17.8 203 2000-2317 148-355 (398)
169 KOG0322 G-protein beta subunit 99.4 2.5E-12 5.5E-17 146.9 15.6 271 1997-2315 15-322 (323)
170 KOG2919 Guanine nucleotide-bin 99.4 1E-11 2.3E-16 144.9 19.0 266 1955-2221 59-359 (406)
171 KOG4328 WD40 protein [Function 99.4 4.7E-12 1E-16 153.2 16.1 213 2024-2315 172-398 (498)
172 PRK11028 6-phosphogluconolacto 99.4 1.3E-10 2.7E-15 143.3 28.9 262 2011-2316 5-304 (330)
173 KOG0303 Actin-binding protein 99.4 4.1E-11 8.9E-16 142.9 23.3 189 1989-2221 77-282 (472)
174 KOG1009 Chromatin assembly com 99.4 1.9E-11 4.1E-16 146.6 18.8 199 1999-2221 16-249 (434)
175 KOG2445 Nuclear pore complex c 99.3 5.2E-11 1.1E-15 138.8 20.8 230 1955-2190 23-318 (361)
176 KOG2055 WD40 repeat protein [G 99.3 4.3E-11 9.3E-16 145.1 20.8 198 2038-2316 213-417 (514)
177 KOG2919 Guanine nucleotide-bin 99.3 4.4E-11 9.5E-16 139.8 20.0 263 2002-2307 55-361 (406)
178 KOG0270 WD40 repeat-containing 99.3 4.2E-11 9.1E-16 145.0 19.8 218 1957-2218 192-434 (463)
179 KOG4227 WD40 repeat protein [G 99.3 6.6E-11 1.4E-15 139.8 20.3 300 1995-2316 55-387 (609)
180 KOG1524 WD40 repeat-containing 99.3 2.5E-11 5.4E-16 148.1 17.1 199 2010-2225 77-279 (737)
181 KOG1538 Uncharacterized conser 99.3 4.7E-11 1E-15 147.7 19.6 254 1955-2227 22-288 (1081)
182 KOG1963 WD40 repeat protein [G 99.3 2.8E-10 6E-15 147.1 26.6 274 1999-2317 208-539 (792)
183 KOG0321 WD40 repeat-containing 99.3 7.3E-11 1.6E-15 147.2 20.3 232 2008-2319 64-350 (720)
184 KOG0302 Ribosome Assembly prot 99.3 1.4E-11 3E-16 146.3 13.1 147 1960-2150 227-378 (440)
185 KOG0307 Vesicle coat complex C 99.3 7.8E-12 1.7E-16 164.4 12.0 230 1959-2191 82-328 (1049)
186 KOG0644 Uncharacterized conser 99.3 1.6E-12 3.5E-17 164.2 5.4 240 2028-2318 180-428 (1113)
187 PRK01742 tolB translocation pr 99.3 2.6E-10 5.6E-15 146.0 24.1 236 1966-2297 183-426 (429)
188 PRK01742 tolB translocation pr 99.3 1.8E-10 3.9E-15 147.5 22.4 207 2017-2315 183-400 (429)
189 KOG1034 Transcriptional repres 99.3 6.8E-11 1.5E-15 138.7 16.3 221 1958-2189 106-382 (385)
190 KOG1963 WD40 repeat protein [G 99.2 4.8E-10 1E-14 145.0 23.2 272 2002-2319 22-325 (792)
191 KOG0649 WD40 repeat protein [G 99.2 1.1E-09 2.4E-14 124.4 22.8 238 2002-2317 16-275 (325)
192 KOG2315 Predicted translation 99.2 3.8E-09 8.3E-14 131.4 28.4 285 1999-2333 37-410 (566)
193 PRK11028 6-phosphogluconolacto 99.2 7.1E-09 1.5E-13 127.9 30.8 252 1961-2221 6-292 (330)
194 KOG1445 Tumor-specific antigen 99.2 3.3E-10 7.2E-15 139.8 18.1 183 1963-2190 599-798 (1012)
195 KOG1523 Actin-related protein 99.2 2.9E-10 6.2E-15 133.5 16.3 227 1997-2225 11-271 (361)
196 PRK05137 tolB translocation pr 99.2 4.5E-09 9.8E-14 134.9 27.8 216 2018-2318 182-414 (435)
197 PRK03629 tolB translocation pr 99.2 6.5E-09 1.4E-13 133.4 28.7 217 2018-2318 179-408 (429)
198 KOG1334 WD40 repeat protein [G 99.2 1.8E-10 3.9E-15 140.5 13.2 291 1997-2329 143-483 (559)
199 PRK04922 tolB translocation pr 99.1 4.6E-09 1E-13 134.8 26.1 214 1999-2296 206-432 (433)
200 KOG2110 Uncharacterized conser 99.1 6.1E-09 1.3E-13 124.6 24.7 144 2007-2191 96-249 (391)
201 KOG2110 Uncharacterized conser 99.1 7.6E-09 1.7E-13 123.8 25.5 233 1999-2318 8-250 (391)
202 KOG0642 Cell-cycle nuclear pro 99.1 6.4E-10 1.4E-14 138.0 17.0 235 1957-2193 306-564 (577)
203 KOG0650 WD40 repeat nucleolar 99.1 4.6E-10 1E-14 139.1 15.3 229 2033-2317 395-638 (733)
204 PRK03629 tolB translocation pr 99.1 8.6E-09 1.9E-13 132.2 27.1 214 1999-2296 201-427 (429)
205 KOG4227 WD40 repeat protein [G 99.1 1.7E-09 3.7E-14 128.2 18.7 242 2031-2318 49-324 (609)
206 PRK04922 tolB translocation pr 99.1 5.4E-09 1.2E-13 134.2 25.2 215 2018-2317 184-412 (433)
207 PRK02889 tolB translocation pr 99.1 1.1E-08 2.3E-13 131.3 27.6 217 1999-2297 198-425 (427)
208 KOG1587 Cytoplasmic dynein int 99.1 6.8E-09 1.5E-13 134.6 25.3 250 1998-2316 244-516 (555)
209 PF02239 Cytochrom_D1: Cytochr 99.1 1.1E-08 2.4E-13 128.6 26.3 278 2001-2319 41-350 (369)
210 KOG1240 Protein kinase contain 99.1 6.4E-09 1.4E-13 137.3 24.3 247 2002-2318 1054-1336(1431)
211 KOG1310 WD40 repeat protein [G 99.1 1E-09 2.2E-14 134.7 15.1 133 1987-2152 44-180 (758)
212 KOG2139 WD40 repeat protein [G 99.1 6.9E-09 1.5E-13 123.3 21.2 268 2000-2315 102-382 (445)
213 KOG1524 WD40 repeat-containing 99.1 1.4E-09 3.1E-14 133.1 15.7 261 2036-2314 12-284 (737)
214 PRK05137 tolB translocation pr 99.1 2.8E-08 6E-13 127.8 28.3 179 1999-2221 204-395 (435)
215 KOG1517 Guanine nucleotide bin 99.1 5.6E-09 1.2E-13 135.7 21.5 259 1956-2221 1075-1370(1387)
216 KOG2321 WD40 repeat protein [G 99.1 9E-09 1.9E-13 127.6 22.3 270 1999-2318 54-345 (703)
217 KOG1517 Guanine nucleotide bin 99.1 8.8E-09 1.9E-13 134.0 22.6 249 2000-2318 1068-1335(1387)
218 KOG2394 WD40 protein DMR-N9 [G 99.0 1.6E-08 3.4E-13 124.9 22.5 196 2005-2212 182-384 (636)
219 PRK02889 tolB translocation pr 99.0 2.5E-08 5.3E-13 128.0 24.4 213 2018-2315 176-402 (427)
220 KOG0290 Conserved WD40 repeat- 99.0 2.1E-08 4.5E-13 116.7 19.8 235 2010-2318 61-320 (364)
221 KOG1587 Cytoplasmic dynein int 99.0 1.7E-08 3.8E-13 130.9 21.5 224 2017-2316 221-472 (555)
222 KOG2139 WD40 repeat protein [G 99.0 1.5E-07 3.2E-12 112.4 26.8 209 1961-2221 114-364 (445)
223 KOG1272 WD40-repeat-containing 99.0 1E-09 2.2E-14 133.3 9.0 225 2002-2315 135-361 (545)
224 KOG0290 Conserved WD40 repeat- 98.9 1.7E-08 3.6E-13 117.5 17.2 152 2000-2151 154-319 (364)
225 KOG1007 WD repeat protein TSSC 98.9 2.5E-08 5.5E-13 115.8 18.6 267 2002-2318 69-363 (370)
226 PF08662 eIF2A: Eukaryotic tra 98.9 4.4E-08 9.5E-13 113.0 20.5 154 2001-2197 10-186 (194)
227 KOG1188 WD40 repeat protein [G 98.9 1.5E-08 3.2E-13 120.2 16.7 259 1958-2225 41-339 (376)
228 KOG0649 WD40 repeat protein [G 98.9 8.1E-08 1.8E-12 109.5 21.1 205 1957-2198 72-282 (325)
229 KOG4497 Uncharacterized conser 98.9 9.8E-09 2.1E-13 120.5 13.4 219 2002-2314 14-238 (447)
230 KOG4497 Uncharacterized conser 98.9 4E-08 8.7E-13 115.5 18.3 303 1999-2317 51-392 (447)
231 KOG2111 Uncharacterized conser 98.9 1.2E-07 2.6E-12 112.1 22.3 229 2002-2317 11-257 (346)
232 PF08662 eIF2A: Eukaryotic tra 98.9 6.7E-08 1.5E-12 111.4 19.8 150 2125-2318 10-181 (194)
233 TIGR02800 propeller_TolB tol-p 98.9 2.2E-07 4.7E-12 118.1 26.3 179 2000-2222 193-384 (417)
234 TIGR02800 propeller_TolB tol-p 98.9 2.5E-07 5.5E-12 117.5 26.6 215 2018-2316 170-397 (417)
235 KOG1240 Protein kinase contain 98.9 6.3E-08 1.4E-12 128.2 20.5 221 2023-2318 1034-1275(1431)
236 KOG1523 Actin-related protein 98.9 5.3E-08 1.2E-12 114.9 17.6 219 2037-2318 9-238 (361)
237 KOG2314 Translation initiation 98.9 3.2E-07 6.9E-12 113.9 24.5 332 1999-2339 213-598 (698)
238 KOG1007 WD repeat protein TSSC 98.9 1E-07 2.2E-12 111.0 18.9 230 2016-2319 38-292 (370)
239 PRK00178 tolB translocation pr 98.8 4.5E-07 9.7E-12 116.3 26.8 180 1999-2222 201-393 (430)
240 PRK04792 tolB translocation pr 98.8 4.8E-07 1E-11 117.0 26.4 213 2000-2296 221-446 (448)
241 PRK00178 tolB translocation pr 98.8 7.1E-07 1.5E-11 114.5 27.8 214 2019-2317 180-407 (430)
242 KOG2394 WD40 protein DMR-N9 [G 98.8 1.2E-08 2.6E-13 125.9 10.3 93 1998-2091 292-384 (636)
243 COG5354 Uncharacterized protei 98.8 7.5E-07 1.6E-11 110.3 25.5 321 1999-2338 35-414 (561)
244 PF02239 Cytochrom_D1: Cytochr 98.8 2.8E-07 6E-12 116.2 21.9 283 2011-2337 9-329 (369)
245 KOG0974 WD-repeat protein WDR6 98.8 5.8E-08 1.3E-12 127.8 16.1 192 1954-2192 96-290 (967)
246 KOG3881 Uncharacterized conser 98.8 3.2E-07 6.9E-12 110.9 20.3 235 2002-2317 61-321 (412)
247 KOG0771 Prolactin regulatory e 98.7 1.4E-07 3E-12 115.0 15.9 191 1954-2189 153-353 (398)
248 KOG0322 G-protein beta subunit 98.7 3.8E-08 8.2E-13 113.5 9.9 140 2010-2149 167-322 (323)
249 PRK04792 tolB translocation pr 98.7 1.7E-06 3.6E-11 112.0 26.2 216 2019-2318 199-427 (448)
250 PF10282 Lactonase: Lactonase, 98.7 9.9E-06 2.1E-10 101.5 31.4 250 2000-2316 40-322 (345)
251 KOG2111 Uncharacterized conser 98.6 3E-06 6.6E-11 100.5 22.9 171 2018-2192 75-258 (346)
252 KOG1334 WD40 repeat protein [G 98.6 3.6E-07 7.7E-12 112.4 15.3 257 2030-2316 134-424 (559)
253 KOG1409 Uncharacterized conser 98.6 2E-06 4.3E-11 102.7 20.2 217 1953-2180 32-270 (404)
254 KOG1354 Serine/threonine prote 98.6 2E-06 4.3E-11 102.4 19.6 268 1998-2318 27-361 (433)
255 PRK01029 tolB translocation pr 98.6 6.4E-06 1.4E-10 106.1 25.2 237 2018-2298 165-426 (428)
256 KOG3881 Uncharacterized conser 98.5 4.2E-06 9.2E-11 101.4 20.8 213 2010-2297 117-342 (412)
257 KOG1409 Uncharacterized conser 98.5 9.6E-07 2.1E-11 105.2 15.0 244 2030-2316 16-270 (404)
258 TIGR02658 TTQ_MADH_Hv methylam 98.5 8.3E-05 1.8E-09 93.0 32.7 258 2018-2319 27-333 (352)
259 KOG1272 WD40-repeat-containing 98.5 1.8E-07 4E-12 114.3 8.9 181 1999-2221 212-398 (545)
260 KOG1310 WD40 repeat protein [G 98.5 9E-07 2E-11 109.6 14.0 197 1956-2190 61-303 (758)
261 KOG4547 WD40 repeat-containing 98.5 9.5E-06 2.1E-10 102.8 23.1 175 2006-2220 3-207 (541)
262 KOG2321 WD40 repeat protein [G 98.5 5.4E-06 1.2E-10 103.8 19.4 240 2036-2318 49-304 (703)
263 PLN02919 haloacid dehalogenase 98.4 7.3E-05 1.6E-09 105.6 31.9 250 2002-2318 573-890 (1057)
264 KOG2041 WD40 repeat protein [G 98.4 4.6E-06 1E-10 105.4 17.4 219 2000-2222 18-278 (1189)
265 PRK01029 tolB translocation pr 98.4 1.4E-05 3.1E-10 102.9 22.6 210 2002-2213 190-425 (428)
266 KOG4547 WD40 repeat-containing 98.4 6.6E-06 1.4E-10 104.2 17.6 185 1958-2190 6-220 (541)
267 KOG0974 WD-repeat protein WDR6 98.4 6.9E-06 1.5E-10 108.9 18.1 184 2004-2229 95-285 (967)
268 TIGR03300 assembly_YfgL outer 98.3 7.5E-05 1.6E-09 94.3 26.2 291 1957-2313 65-376 (377)
269 COG2706 3-carboxymuconate cycl 98.3 0.00036 7.7E-09 85.1 29.6 260 2017-2317 15-322 (346)
270 KOG2314 Translation initiation 98.3 4E-05 8.6E-10 96.0 20.3 254 1955-2222 220-557 (698)
271 COG2706 3-carboxymuconate cycl 98.3 0.0011 2.3E-08 81.1 31.4 222 1997-2221 40-309 (346)
272 PF15492 Nbas_N: Neuroblastoma 98.2 0.00014 3E-09 86.5 23.1 188 2122-2319 45-262 (282)
273 PLN02919 haloacid dehalogenase 98.2 0.00026 5.7E-09 100.2 30.0 196 1999-2221 626-877 (1057)
274 PF10282 Lactonase: Lactonase, 98.2 0.00074 1.6E-08 84.9 30.9 228 2011-2316 2-275 (345)
275 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.00068 1.5E-08 85.0 29.9 234 2004-2282 53-339 (352)
276 PRK04043 tolB translocation pr 98.2 0.00018 3.9E-09 92.6 25.4 177 2001-2222 192-387 (419)
277 COG4946 Uncharacterized protei 98.2 0.0003 6.4E-09 86.9 25.4 172 1952-2178 327-506 (668)
278 KOG1064 RAVE (regulator of V-A 98.2 6.3E-06 1.4E-10 112.8 11.8 182 1994-2179 2206-2397(2439)
279 COG5354 Uncharacterized protei 98.2 0.00012 2.6E-09 91.6 21.4 263 1999-2308 74-421 (561)
280 PF04762 IKI3: IKI3 family; I 98.1 0.00045 9.7E-09 96.4 28.3 219 1998-2221 77-323 (928)
281 KOG1064 RAVE (regulator of V-A 98.1 1.9E-05 4E-10 108.4 13.4 221 2035-2309 2205-2439(2439)
282 PRK04043 tolB translocation pr 98.1 0.00086 1.9E-08 86.5 27.7 220 2018-2318 169-402 (419)
283 KOG3914 WD repeat protein WDR4 98.0 1.9E-05 4.2E-10 96.4 11.1 106 2014-2160 128-233 (390)
284 KOG4190 Uncharacterized conser 98.0 6.5E-06 1.4E-10 101.4 6.7 206 2031-2314 728-946 (1034)
285 KOG1832 HIV-1 Vpr-binding prot 98.0 4.3E-06 9.4E-11 107.5 4.6 175 1998-2221 1103-1285(1516)
286 KOG2041 WD40 repeat protein [G 98.0 3.5E-05 7.5E-10 97.8 11.8 157 2039-2221 15-175 (1189)
287 COG4946 Uncharacterized protei 97.9 0.0021 4.5E-08 79.8 25.2 233 2043-2316 271-525 (668)
288 PRK11138 outer membrane biogen 97.9 0.0029 6.2E-08 80.9 27.9 250 2008-2315 120-393 (394)
289 KOG2114 Vacuolar assembly/sort 97.9 0.0013 2.8E-08 86.7 23.3 191 2002-2220 29-232 (933)
290 PF08450 SGL: SMP-30/Gluconola 97.8 0.0023 5E-08 76.3 23.8 215 2001-2221 4-244 (246)
291 PF00400 WD40: WD domain, G-be 97.8 2.7E-05 5.9E-10 66.1 5.2 39 2028-2066 1-39 (39)
292 PF07433 DUF1513: Protein of u 97.8 0.012 2.6E-07 72.2 29.4 246 2002-2314 10-283 (305)
293 PF04762 IKI3: IKI3 family; I 97.8 0.0049 1.1E-07 86.3 29.4 172 1999-2173 123-361 (928)
294 COG5170 CDC55 Serine/threonine 97.8 0.00055 1.2E-08 81.1 16.5 267 1998-2314 28-365 (460)
295 KOG2315 Predicted translation 97.7 0.0016 3.4E-08 82.8 20.0 167 2001-2213 222-411 (566)
296 KOG4190 Uncharacterized conser 97.7 0.0001 2.2E-09 91.3 9.1 159 2002-2162 741-918 (1034)
297 KOG0309 Conserved WD40 repeat- 97.7 0.00033 7.2E-09 89.9 13.3 246 2001-2316 72-339 (1081)
298 TIGR03300 assembly_YfgL outer 97.7 0.0045 9.8E-08 78.4 23.6 254 2008-2318 65-340 (377)
299 KOG3914 WD repeat protein WDR4 97.6 0.00059 1.3E-08 83.9 13.9 155 2123-2319 65-226 (390)
300 KOG1354 Serine/threonine prote 97.6 0.0022 4.8E-08 77.4 18.0 232 1956-2190 36-359 (433)
301 PF00400 WD40: WD domain, G-be 97.6 0.00019 4.2E-09 60.9 6.7 39 2275-2314 1-39 (39)
302 KOG3617 WD40 and TPR repeat-co 97.5 0.0015 3.4E-08 84.8 16.7 96 1963-2069 37-132 (1416)
303 PF08450 SGL: SMP-30/Gluconola 97.5 0.024 5.2E-07 67.7 25.5 214 2043-2305 4-244 (246)
304 KOG1645 RING-finger-containing 97.5 0.0028 6.1E-08 78.0 16.8 249 2020-2315 175-460 (463)
305 KOG0280 Uncharacterized conser 97.4 0.005 1.1E-07 73.4 17.9 166 2010-2215 87-266 (339)
306 KOG1912 WD40 repeat protein [G 97.4 0.018 4E-07 75.3 23.9 114 2174-2319 439-554 (1062)
307 KOG1912 WD40 repeat protein [G 97.4 0.0084 1.8E-07 78.2 20.7 257 2001-2316 20-304 (1062)
308 KOG4532 WD40-like repeat conta 97.4 0.014 3E-07 69.0 19.9 216 2009-2307 85-323 (344)
309 KOG4714 Nucleoporin [Nuclear s 97.3 0.0012 2.5E-08 77.4 11.1 150 1955-2151 99-255 (319)
310 KOG2695 WD40 repeat protein [G 97.3 0.00036 7.7E-09 84.0 6.7 123 2000-2160 256-386 (425)
311 KOG4714 Nucleoporin [Nuclear s 97.3 0.0012 2.6E-08 77.3 10.3 215 2032-2316 29-254 (319)
312 KOG1920 IkappaB kinase complex 97.3 0.035 7.6E-07 76.3 25.2 212 1999-2221 71-308 (1265)
313 PF13360 PQQ_2: PQQ-like domai 97.3 0.039 8.4E-07 64.8 23.1 212 2017-2318 2-232 (238)
314 KOG0280 Uncharacterized conser 97.2 0.0075 1.6E-07 72.0 16.3 120 1999-2156 124-248 (339)
315 KOG0882 Cyclophilin-related pe 97.2 0.0012 2.6E-08 81.7 9.7 219 2036-2319 7-234 (558)
316 KOG4532 WD40-like repeat conta 97.2 0.022 4.8E-07 67.3 19.1 189 1956-2190 83-282 (344)
317 KOG1832 HIV-1 Vpr-binding prot 97.1 0.00045 9.8E-09 89.8 5.1 211 2029-2304 1092-1319(1516)
318 KOG3621 WD40 repeat-containing 97.1 0.026 5.6E-07 74.0 20.6 118 2000-2151 37-155 (726)
319 KOG4649 PQQ (pyrrolo-quinoline 97.1 0.22 4.8E-06 59.1 25.7 69 2007-2075 62-130 (354)
320 PF13360 PQQ_2: PQQ-like domai 97.0 0.052 1.1E-06 63.7 21.4 119 2005-2161 33-151 (238)
321 KOG2066 Vacuolar assembly/sort 97.0 0.0091 2E-07 78.8 15.7 182 2038-2316 39-233 (846)
322 KOG2066 Vacuolar assembly/sort 97.0 0.019 4E-07 76.0 18.3 167 2008-2190 49-233 (846)
323 PF15492 Nbas_N: Neuroblastoma 97.0 0.16 3.6E-06 61.2 24.3 28 2002-2029 49-76 (282)
324 KOG2695 WD40 repeat protein [G 97.0 0.003 6.6E-08 76.4 10.1 160 2014-2211 230-401 (425)
325 PF07433 DUF1513: Protein of u 97.0 0.032 6.9E-07 68.6 18.8 181 2002-2184 56-279 (305)
326 KOG3617 WD40 and TPR repeat-co 96.9 0.024 5.3E-07 74.4 17.9 108 2001-2150 20-131 (1416)
327 KOG1275 PAB-dependent poly(A) 96.8 0.01 2.2E-07 78.9 13.1 144 2002-2149 181-341 (1118)
328 KOG0882 Cyclophilin-related pe 96.7 0.016 3.4E-07 72.3 13.8 185 2007-2192 19-233 (558)
329 KOG1275 PAB-dependent poly(A) 96.7 0.015 3.3E-07 77.3 14.3 177 2007-2227 146-337 (1118)
330 PF06433 Me-amine-dh_H: Methyl 96.6 0.23 5E-06 62.0 22.7 262 2018-2318 17-322 (342)
331 KOG0309 Conserved WD40 repeat- 96.6 0.0044 9.6E-08 80.2 8.2 184 1958-2150 128-339 (1081)
332 KOG3621 WD40 repeat-containing 96.6 0.067 1.5E-06 70.3 18.3 106 1956-2069 44-155 (726)
333 PF08596 Lgl_C: Lethal giant l 96.6 0.36 7.9E-06 62.2 24.9 256 2040-2319 3-293 (395)
334 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.28 6.1E-06 62.2 23.7 258 2005-2304 1-345 (353)
335 KOG1920 IkappaB kinase complex 96.5 0.1 2.2E-06 72.1 20.0 201 2038-2319 68-325 (1265)
336 PF11768 DUF3312: Protein of u 96.5 0.011 2.3E-07 76.7 10.3 71 1998-2070 261-331 (545)
337 PRK11138 outer membrane biogen 96.4 0.28 6.1E-06 63.0 22.8 141 2008-2158 69-231 (394)
338 PF02897 Peptidase_S9_N: Proly 96.2 1.6 3.5E-05 56.3 28.6 244 1998-2319 125-407 (414)
339 PF00780 CNH: CNH domain; Int 96.0 1.5 3.3E-05 53.1 25.3 63 2005-2071 4-67 (275)
340 KOG1788 Uncharacterized conser 96.0 0.0014 3.1E-08 85.7 -0.7 98 1260-1361 2434-2533(2799)
341 smart00320 WD40 WD40 repeats. 96.0 0.011 2.4E-07 46.7 4.5 38 2029-2066 3-40 (40)
342 KOG1645 RING-finger-containing 96.0 0.13 2.7E-06 64.2 15.3 70 2001-2071 198-269 (463)
343 PF11768 DUF3312: Protein of u 95.9 0.27 5.8E-06 64.2 18.6 74 2118-2191 257-330 (545)
344 PF14583 Pectate_lyase22: Olig 95.9 0.47 1E-05 60.3 20.2 284 2003-2314 42-379 (386)
345 COG0823 TolB Periplasmic compo 95.8 0.22 4.7E-06 64.8 17.9 158 2020-2221 175-344 (425)
346 KOG2114 Vacuolar assembly/sort 95.8 0.48 1E-05 63.8 20.4 132 2040-2216 27-185 (933)
347 PRK02888 nitrous-oxide reducta 95.6 1 2.2E-05 60.3 22.8 149 2122-2317 236-405 (635)
348 COG3391 Uncharacterized conser 95.6 4.4 9.5E-05 52.3 28.0 237 2002-2318 36-285 (381)
349 COG3490 Uncharacterized protei 95.5 1.5 3.2E-05 53.3 21.1 228 2002-2319 73-351 (366)
350 PF04053 Coatomer_WDAD: Coatom 95.5 1.4 3E-05 57.9 23.2 214 2001-2316 37-262 (443)
351 smart00320 WD40 WD40 repeats. 95.3 0.043 9.4E-07 43.2 5.8 38 2276-2314 3-40 (40)
352 PF04841 Vps16_N: Vps16, N-ter 95.2 4.4 9.5E-05 52.8 26.5 66 2002-2069 34-110 (410)
353 cd00216 PQQ_DH Dehydrogenases 95.2 3.7 8E-05 54.6 26.4 66 2009-2076 111-191 (488)
354 cd00216 PQQ_DH Dehydrogenases 95.2 3.2 6.9E-05 55.2 25.7 281 2008-2318 61-426 (488)
355 PRK02888 nitrous-oxide reducta 94.9 0.39 8.5E-06 64.1 15.5 183 2002-2191 198-405 (635)
356 PF06977 SdiA-regulated: SdiA- 94.8 3.1 6.7E-05 50.7 21.9 192 1999-2220 24-239 (248)
357 COG5170 CDC55 Serine/threonine 94.7 0.45 9.8E-06 57.5 13.8 151 2035-2187 169-364 (460)
358 COG0823 TolB Periplasmic compo 94.6 0.73 1.6E-05 60.1 17.0 175 2002-2181 198-390 (425)
359 KOG4640 Anaphase-promoting com 94.5 0.11 2.3E-06 67.9 9.0 90 2000-2090 24-114 (665)
360 COG3391 Uncharacterized conser 94.5 6.5 0.00014 50.8 25.1 179 2001-2221 78-271 (381)
361 PF14655 RAB3GAP2_N: Rab3 GTPa 94.3 5 0.00011 52.3 23.3 92 2115-2216 302-414 (415)
362 KOG1897 Damage-specific DNA bi 94.2 11 0.00024 52.3 26.4 311 1968-2317 471-816 (1096)
363 PF04053 Coatomer_WDAD: Coatom 94.0 1.4 3E-05 57.8 17.7 143 2116-2314 28-171 (443)
364 PF04841 Vps16_N: Vps16, N-ter 93.7 23 0.00049 46.4 27.8 54 2121-2174 217-273 (410)
365 PF03178 CPSF_A: CPSF A subuni 93.5 7.6 0.00016 48.6 22.5 102 2119-2223 87-193 (321)
366 PF03178 CPSF_A: CPSF A subuni 93.4 4.5 9.7E-05 50.6 20.3 187 1996-2225 26-258 (321)
367 KOG1008 Uncharacterized conser 93.4 0.043 9.3E-07 71.1 2.4 179 2000-2214 60-255 (783)
368 COG3386 Gluconolactonase [Carb 92.6 7.6 0.00017 48.8 20.3 213 2004-2221 32-274 (307)
369 PF08596 Lgl_C: Lethal giant l 92.4 12 0.00027 48.6 22.5 119 1999-2150 4-173 (395)
370 PF08553 VID27: VID27 cytoplas 92.3 1.5 3.3E-05 60.5 14.8 131 2140-2314 502-645 (794)
371 PF00930 DPPIV_N: Dipeptidyl p 92.0 4.1 8.8E-05 51.9 17.3 218 2000-2221 46-346 (353)
372 KOG1897 Damage-specific DNA bi 91.9 74 0.0016 44.9 29.9 51 2264-2315 847-897 (1096)
373 KOG4640 Anaphase-promoting com 91.6 0.53 1.2E-05 61.7 8.7 78 2039-2157 21-99 (665)
374 PF06433 Me-amine-dh_H: Methyl 91.5 21 0.00045 45.4 21.9 237 2002-2282 41-329 (342)
375 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.4 69 0.0015 43.5 32.0 54 2264-2319 440-493 (527)
376 PRK13616 lipoprotein LpqB; Pro 91.2 15 0.00032 50.2 22.1 75 2142-2218 430-512 (591)
377 KOG4649 PQQ (pyrrolo-quinoline 91.1 44 0.00096 40.7 23.2 102 1957-2067 63-164 (354)
378 PRK13616 lipoprotein LpqB; Pro 91.0 3.7 7.9E-05 55.9 16.1 97 2121-2221 350-466 (591)
379 PF14783 BBS2_Mid: Ciliary BBS 91.0 5.3 0.00012 42.9 13.9 67 1998-2068 4-71 (111)
380 PRK10115 protease 2; Provision 89.6 1.1E+02 0.0024 42.9 30.2 59 1998-2058 128-191 (686)
381 KOG2079 Vacuolar assembly/sort 89.5 1.1 2.3E-05 62.0 9.0 69 2008-2076 99-168 (1206)
382 KOG2079 Vacuolar assembly/sort 89.4 1.2 2.5E-05 61.6 9.3 102 2169-2314 96-201 (1206)
383 PF06977 SdiA-regulated: SdiA- 89.3 47 0.001 40.7 22.0 107 2114-2221 15-136 (248)
384 PF08553 VID27: VID27 cytoplas 89.1 5 0.00011 55.7 15.2 143 2008-2188 493-645 (794)
385 PF02897 Peptidase_S9_N: Proly 88.9 23 0.00049 46.0 20.5 103 2123-2225 126-249 (414)
386 KOG2444 WD40 repeat protein [G 88.5 1 2.2E-05 53.4 7.0 106 1956-2069 69-178 (238)
387 PF02893 GRAM: GRAM domain; I 88.4 1.2 2.6E-05 43.2 6.5 59 1470-1538 10-68 (69)
388 COG3490 Uncharacterized protei 87.3 16 0.00035 44.9 15.8 156 2126-2304 73-243 (366)
389 KOG1008 Uncharacterized conser 87.0 0.34 7.5E-06 63.3 2.3 156 1993-2150 99-275 (783)
390 PF10647 Gmad1: Lipoprotein Lp 86.4 25 0.00055 42.9 17.6 101 2122-2222 25-131 (253)
391 COG3386 Gluconolactonase [Carb 85.9 83 0.0018 39.8 22.0 142 2121-2306 111-275 (307)
392 TIGR03075 PQQ_enz_alc_DH PQQ-d 85.8 1.5E+02 0.0033 40.3 27.1 27 2130-2156 310-339 (527)
393 KOG4441 Proteins containing BT 85.8 30 0.00064 47.3 19.4 60 2131-2190 380-452 (571)
394 PHA02713 hypothetical protein; 84.9 39 0.00084 46.1 20.0 51 2131-2181 351-408 (557)
395 COG3204 Uncharacterized protei 84.8 44 0.00096 41.6 18.0 104 2117-2220 82-198 (316)
396 PF12234 Rav1p_C: RAVE protein 84.4 9.3 0.0002 52.0 13.6 124 1995-2149 28-155 (631)
397 KOG2395 Protein involved in va 84.0 8.8 0.00019 50.2 12.3 136 2136-2315 350-499 (644)
398 TIGR03074 PQQ_membr_DH membran 81.7 2.5E+02 0.0054 40.0 25.9 56 2264-2319 413-480 (764)
399 KOG4499 Ca2+-binding protein R 81.5 42 0.00092 40.4 15.5 128 2084-2212 111-263 (310)
400 PF12894 Apc4_WD40: Anaphase-p 81.4 3.1 6.8E-05 38.0 5.2 34 2120-2154 11-44 (47)
401 PF14783 BBS2_Mid: Ciliary BBS 81.2 36 0.00079 36.8 13.7 92 2123-2220 2-102 (111)
402 KOG2444 WD40 repeat protein [G 80.1 4.9 0.00011 47.9 7.6 63 2008-2070 70-134 (238)
403 TIGR03118 PEPCTERM_chp_1 conse 80.1 1.8E+02 0.0038 36.9 22.3 68 2002-2069 28-119 (336)
404 PF00780 CNH: CNH domain; Int 79.9 1.5E+02 0.0033 36.0 21.5 94 2123-2221 38-155 (275)
405 PF07995 GSDH: Glucose / Sorbo 79.8 88 0.0019 39.8 19.3 48 2000-2049 5-59 (331)
406 KOG2395 Protein involved in va 79.8 13 0.00029 48.6 11.7 137 2010-2188 348-498 (644)
407 smart00568 GRAM domain in gluc 79.3 5.1 0.00011 37.9 6.3 56 1471-1537 4-59 (61)
408 PF15390 DUF4613: Domain of un 78.6 2.6E+02 0.0057 38.0 27.0 114 2036-2150 54-186 (671)
409 PF05694 SBP56: 56kDa selenium 77.9 2E+02 0.0042 38.2 21.1 63 2203-2305 312-392 (461)
410 KOG1916 Nuclear protein, conta 77.9 2.2 4.9E-05 57.8 4.4 66 2002-2068 189-265 (1283)
411 COG4257 Vgb Streptogramin lyas 77.7 1.1E+02 0.0024 37.9 17.7 215 2002-2218 67-291 (353)
412 PF10647 Gmad1: Lipoprotein Lp 77.3 1.1E+02 0.0025 37.4 18.5 100 2122-2221 67-184 (253)
413 TIGR02604 Piru_Ver_Nterm putat 76.9 44 0.00094 43.0 15.6 96 2122-2220 73-201 (367)
414 PF14470 bPH_3: Bacterial PH d 76.2 34 0.00073 35.0 11.7 91 1471-1574 3-94 (96)
415 PF12894 Apc4_WD40: Anaphase-p 75.9 6.6 0.00014 36.0 5.6 31 2038-2068 11-41 (47)
416 COG3204 Uncharacterized protei 75.2 98 0.0021 38.8 16.7 187 2034-2220 81-301 (316)
417 KOG3630 Nuclear pore complex, 74.3 39 0.00084 48.1 14.3 100 2122-2221 157-262 (1405)
418 PHA03098 kelch-like protein; P 73.7 81 0.0017 42.5 17.6 60 2131-2190 389-464 (534)
419 PF10168 Nup88: Nuclear pore c 73.6 3.1E+02 0.0066 38.9 23.0 73 1998-2070 86-181 (717)
420 TIGR02604 Piru_Ver_Nterm putat 72.6 78 0.0017 40.8 16.3 60 1998-2059 15-90 (367)
421 TIGR03074 PQQ_membr_DH membran 72.3 1.1E+02 0.0024 43.3 18.6 68 2008-2076 260-352 (764)
422 COG4257 Vgb Streptogramin lyas 71.4 75 0.0016 39.3 14.2 99 2122-2221 63-166 (353)
423 KOG4441 Proteins containing BT 71.3 1.5E+02 0.0033 40.7 19.2 61 2131-2191 427-500 (571)
424 PF10168 Nup88: Nuclear pore c 68.5 48 0.001 46.5 13.7 35 2284-2318 144-181 (717)
425 TIGR02171 Fb_sc_TIGR02171 Fibr 66.9 1.3E+02 0.0029 42.7 17.0 82 2018-2099 329-416 (912)
426 KOG2280 Vacuolar assembly/sort 64.0 1.2E+02 0.0026 42.0 15.2 51 2018-2070 64-114 (829)
427 PHA02713 hypothetical protein; 61.4 90 0.0019 42.7 14.2 59 2131-2189 463-532 (557)
428 PF14870 PSII_BNR: Photosynthe 60.6 2.2E+02 0.0047 36.2 16.2 69 1997-2066 145-213 (302)
429 KOG4499 Ca2+-binding protein R 60.3 1.5E+02 0.0032 36.1 13.5 47 2125-2171 216-264 (310)
430 PHA02790 Kelch-like protein; P 60.2 2.4E+02 0.0052 37.9 17.6 57 2131-2190 362-423 (480)
431 PF13449 Phytase-like: Esteras 59.9 3.3E+02 0.0071 34.7 18.0 102 2121-2222 20-166 (326)
432 PF05694 SBP56: 56kDa selenium 59.9 2.1E+02 0.0045 37.9 15.9 158 2002-2178 186-391 (461)
433 PRK10115 protease 2; Provision 59.8 1.8E+02 0.0039 40.8 17.0 102 2122-2224 128-244 (686)
434 PRK13684 Ycf48-like protein; P 58.9 3.3E+02 0.0071 34.9 17.8 64 1998-2063 174-238 (334)
435 KOG1983 Tomosyn and related SN 58.9 1.3E+02 0.0027 44.1 15.4 28 2000-2027 39-66 (993)
436 PF07569 Hira: TUP1-like enhan 58.6 38 0.00083 40.7 8.9 68 2002-2070 16-97 (219)
437 PF12234 Rav1p_C: RAVE protein 57.7 2E+02 0.0043 39.9 16.1 60 2163-2222 32-94 (631)
438 PHA03098 kelch-like protein; P 57.0 2.5E+02 0.0054 37.9 17.3 61 2131-2191 342-415 (534)
439 PF15390 DUF4613: Domain of un 54.9 1.8E+02 0.0039 39.5 14.4 101 2120-2221 56-174 (671)
440 PF05096 Glu_cyclase_2: Glutam 53.0 5.6E+02 0.012 32.1 19.1 175 2002-2221 50-249 (264)
441 PLN00033 photosystem II stabil 50.8 6E+02 0.013 33.6 18.4 98 2123-2221 241-346 (398)
442 PF10313 DUF2415: Uncharacteri 50.7 40 0.00087 30.7 5.4 32 2121-2152 1-35 (43)
443 PF05096 Glu_cyclase_2: Glutam 50.2 6.1E+02 0.013 31.8 23.0 182 2040-2305 46-249 (264)
444 KOG2063 Vacuolar assembly/sort 49.8 1.6E+02 0.0034 42.2 13.6 67 2003-2070 21-98 (877)
445 smart00036 CNH Domain found in 49.0 6.6E+02 0.014 31.8 23.9 62 2005-2069 10-74 (302)
446 KOG3630 Nuclear pore complex, 48.9 1.8E+02 0.0038 42.1 13.4 55 2120-2175 198-258 (1405)
447 COG5167 VID27 Protein involved 48.6 1.4E+02 0.0031 39.5 11.8 137 2136-2316 484-632 (776)
448 TIGR03606 non_repeat_PQQ dehyd 48.4 7.1E+02 0.015 33.5 18.6 31 2039-2069 30-60 (454)
449 KOG3616 Selective LIM binding 48.4 64 0.0014 43.7 8.9 34 2120-2153 14-47 (1636)
450 KOG1916 Nuclear protein, conta 47.7 20 0.00043 49.4 4.5 103 2018-2150 153-265 (1283)
451 PF07569 Hira: TUP1-like enhan 45.7 85 0.0018 37.8 9.1 80 2046-2152 18-97 (219)
452 PF10214 Rrn6: RNA polymerase 45.3 1.1E+03 0.024 33.7 21.2 29 2121-2149 146-175 (765)
453 KOG4659 Uncharacterized conser 44.7 9.4E+02 0.02 36.0 19.0 22 2117-2138 658-679 (1899)
454 KOG1898 Splicing factor 3b, su 44.1 1E+03 0.022 35.0 19.2 66 2010-2075 551-625 (1205)
455 PF14583 Pectate_lyase22: Olig 43.6 2.9E+02 0.0063 36.2 13.6 169 2126-2315 41-221 (386)
456 KOG3616 Selective LIM binding 37.9 7.6E+02 0.017 34.4 15.9 67 2000-2069 18-84 (1636)
457 PF11715 Nup160: Nucleoporin N 37.8 63 0.0014 43.8 7.1 71 2006-2076 156-256 (547)
458 PF12657 TFIIIC_delta: Transcr 35.2 1.2E+02 0.0027 34.9 8.0 30 2040-2069 87-122 (173)
459 PRK13615 lipoprotein LpqB; Pro 35.2 7.5E+02 0.016 34.2 16.2 94 2124-2221 337-435 (557)
460 PRK13613 lipoprotein LpqB; Pro 34.4 7.4E+02 0.016 34.5 16.2 102 2118-2221 359-473 (599)
461 PF07995 GSDH: Glucose / Sorbo 33.7 4.9E+02 0.011 33.3 13.7 99 2122-2222 3-133 (331)
462 PF10313 DUF2415: Uncharacteri 33.0 93 0.002 28.4 5.0 32 2039-2070 1-35 (43)
463 PLN00033 photosystem II stabil 32.5 1.3E+03 0.029 30.5 17.8 141 2002-2147 244-396 (398)
464 PF14870 PSII_BNR: Photosynthe 31.2 1.2E+03 0.026 29.7 27.8 104 2117-2221 141-251 (302)
465 KOG4460 Nuclear pore complex, 30.7 4.5E+02 0.0097 35.4 12.2 32 2287-2318 166-200 (741)
466 KOG2247 WD40 repeat-containing 29.6 50 0.0011 43.4 3.9 94 1963-2066 93-186 (615)
467 PF08728 CRT10: CRT10; InterP 29.3 5.4E+02 0.012 36.4 13.5 105 2007-2149 113-245 (717)
468 KOG1900 Nuclear pore complex, 29.2 2.6E+02 0.0056 41.2 10.6 137 2015-2151 96-273 (1311)
469 COG3823 Glutamine cyclotransfe 28.7 7.8E+02 0.017 30.0 12.7 20 2201-2220 227-247 (262)
470 cd01264 PH_melted Melted pleck 28.5 2.9E+02 0.0064 29.6 8.7 70 1494-1574 24-97 (101)
471 PF04360 Serglycin: Serglycin 27.8 14 0.0003 40.9 -1.2 41 914-954 90-133 (150)
472 PF14655 RAB3GAP2_N: Rab3 GTPa 27.7 2.5E+02 0.0054 37.2 9.7 76 1999-2074 310-404 (415)
473 COG4907 Predicted membrane pro 26.9 28 0.00061 44.9 1.0 16 919-934 577-593 (595)
474 PF11715 Nup160: Nucleoporin N 26.1 1.1E+02 0.0024 41.5 6.5 39 2121-2159 215-257 (547)
475 KOG1900 Nuclear pore complex, 26.0 3.7E+02 0.0081 39.7 11.3 34 2284-2317 240-273 (1311)
476 KOG2377 Uncharacterized conser 25.9 6.7E+02 0.014 33.4 12.4 117 2036-2153 64-188 (657)
477 TIGR03606 non_repeat_PQQ dehyd 25.8 1.8E+03 0.039 29.9 18.8 51 2000-2050 33-90 (454)
478 PF13449 Phytase-like: Esteras 25.4 1.5E+03 0.032 28.9 16.9 97 2123-2220 87-232 (326)
479 PF05935 Arylsulfotrans: Aryls 24.9 1.8E+03 0.04 29.7 21.2 101 2122-2222 272-436 (477)
480 PF08728 CRT10: CRT10; InterP 24.5 1.8E+02 0.0039 40.7 7.8 70 1998-2067 165-245 (717)
481 KOG2006 WD40 repeat protein [G 24.2 2.6E+02 0.0056 40.2 9.1 70 2001-2070 153-227 (1023)
482 PF03022 MRJP: Major royal jel 24.0 1.5E+03 0.033 28.4 17.8 203 1946-2180 9-255 (287)
483 PF14761 HPS3_N: Hermansky-Pud 23.7 6.8E+02 0.015 30.4 11.4 42 2015-2057 35-78 (215)
484 PF11635 Med16: Mediator compl 23.2 2.4E+03 0.052 30.5 20.5 66 2120-2185 259-345 (753)
485 PF14761 HPS3_N: Hermansky-Pud 23.0 1.4E+03 0.031 27.8 14.1 58 2162-2221 19-78 (215)
486 PF08801 Nucleoporin_N: Nup133 22.8 5.7E+02 0.012 33.6 11.9 31 2287-2317 190-220 (422)
487 PHA02790 Kelch-like protein; P 22.5 1E+03 0.022 32.1 14.3 64 2005-2070 316-386 (480)
488 PRK13615 lipoprotein LpqB; Pro 22.3 1.7E+03 0.037 30.9 16.2 146 2001-2150 338-502 (557)
489 PF08801 Nucleoporin_N: Nup133 22.0 4.4E+02 0.0096 34.6 10.7 31 2121-2151 190-220 (422)
490 PRK13684 Ycf48-like protein; P 21.9 1.7E+03 0.038 28.4 26.1 99 2120-2221 172-278 (334)
491 PF12657 TFIIIC_delta: Transcr 21.9 3.6E+02 0.0078 31.2 8.7 30 2121-2150 86-121 (173)
492 PF06115 DUF956: Domain of unk 21.6 6.4E+02 0.014 28.0 9.6 88 1470-1576 4-96 (118)
493 PF03088 Str_synth: Strictosid 21.4 6.6E+02 0.014 26.4 9.5 53 2139-2191 34-88 (89)
494 COG5167 VID27 Protein involved 21.2 9.7E+02 0.021 32.4 12.6 149 2002-2190 473-632 (776)
495 KOG2280 Vacuolar assembly/sort 20.9 2.6E+03 0.056 30.1 19.2 40 2120-2159 216-255 (829)
496 PLN02153 epithiospecifier prot 20.5 1.8E+03 0.039 28.0 18.3 39 2142-2180 217-260 (341)
497 TIGR02276 beta_rpt_yvtn 40-res 20.2 3.4E+02 0.0074 23.1 6.2 31 2130-2160 1-32 (42)
No 1
>KOG1787 consensus Kinase A-anchor protein Neurobeachin and related BEACH and WD40 repeat proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-131 Score=1290.43 Aligned_cols=974 Identities=40% Similarity=0.523 Sum_probs=818.1
Q ss_pred ccceeeeeccccccCCCccchhhhhhhhhhhhhccCCCccCccccccccccccccccccccccccccccccccchhhhhc
Q 000085 626 HNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSSTGEQRTRREESLPLFKRRLLGGLLDFATRELQVQTQVIAAAA 705 (2342)
Q Consensus 626 ~~~~~i~~e~~~~~k~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~ee~~p~~~r~~~~~~l~~~~~~~~~~~~~~~~~~ 705 (2342)
++++.|++|+++++ +..+.|||++|+..+||.+++..|++.+++.++++|++|++.|+++.+++++++++++++.
T Consensus 1 ~~~~~~~~~~ss~~-----~~~~~i~~~~~l~~~~~~~~~~~r~~~~~sq~~~rr~l~t~~l~~a~~~~~~~~~~~~~a~ 75 (1126)
T KOG1787|consen 1 HNGLNIMLEHSSRD-----AAAADIPCSSWLGPSGGQSAGEVRIRLEVSQAALRRVLLTGLLDSALSELQAQLRVIAAAA 75 (1126)
T ss_pred CchhhhhccchhHH-----HHhhccccccccccccccccccceecccccchHHHHHHhhcchHHHHHhhhhhhHHHHHHH
Confidence 57899999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcchhHHHHhhccccccccccceeeeeeeehhhhcccccccccccCCCCCCCcccccCCCCCCCccccccc
Q 000085 706 AGVAAEGLPPKDAKAEARNAAQLSVALVENAIVILMLVEDHLRLQSKLSCASRKKDASPSPLSLVSPLNNHSSLSASIGA 785 (2342)
Q Consensus 706 ~~~~~~~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~l~e~~l~~~~~~~~~~~~~~~~~~p~s~~s~~~~~~~~~~~~~~ 785 (2342)
+|.+.+++.|+.+|...++.+++++-+++|.+|++|+.++|++.+....|+.+...-.+.+.+.+++.+......++.+.
T Consensus 76 a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~t~vi~~~~~~~~~~~q~~~~~~~~~~~i~~v~e~~~~~~~~~~~~~~~~~ 155 (1126)
T KOG1787|consen 76 AGEKCSRLLPSVATLGLEMDAQLSVLRVENTVVILLPSELHLRDQQKFCQKHSAVACVPSVNEPFLSTNDGAVYALRSGL 155 (1126)
T ss_pred HHhhhhhhcccchhhHhhhccccceeeeccccccccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccceeeccccc
Confidence 99999999999999999999999999999999999999999999999888888888999999999999999999999999
Q ss_pred ccccccCCcc---cCCCCCCcccccccccccCcchHHHHHHHHHhhhcCCCccceeeeeeccchhhhhcccccccccccc
Q 000085 786 ESLDSLGDRR---SDSSGLPLDVLASMADANGQISAAVMERLTAAAAAEPYESVSCAFVSYGSCAMDLAEGWKYRSRLWY 862 (2342)
Q Consensus 786 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (2342)
+. |..++|. .++||.+.|.++.|+++.|||++.+|||+|+|+++|||++|.|+|+.||+|.+|++++|+|++++ |
T Consensus 156 ~~-e~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~r~~~~v~~~~~~~~~~~~d~~~~w~~~~~~-~ 233 (1126)
T KOG1787|consen 156 ES-EFSSSRASASSVSGGVMLDILALMALASGQISAEVAERLTAAARLRTYASVTQLFTKIGMLLTDLGAQWRDLSHS-L 233 (1126)
T ss_pred hh-hhhhccchhhhccCCchhhhhhhhhhcccchhHHHHHHHHHHhhcccccchHHhhhhHHHHHHHHHHHHHhhccc-c
Confidence 98 8888777 89999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cccCCCCcccccCCCccccccccccccCCCCCeEEeccchhhHHHHHHhhccccCCCCcccccCCCCCcchHHHHHHHHh
Q 000085 863 GVGLPSKSSEIGGGGSGWDSWNSSLEKDANGNWIELPLVKKSVSMLQALLLDESGLGGGLGIGGGSGTGMGGMAALYQLL 942 (2342)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (2342)
|+ +|+..||+|+.+|+.|+...++++|++|+++|++++++.|.++++||+ |||++||+|++|+|++|..++|..
T Consensus 234 ~~---s~~~~f~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~t~~~~~~~~~~~~ 307 (1126)
T KOG1787|consen 234 SR---SKKALFGEGENFSDIVSRLNENLRNANGLEHPEAKLNVGEKQLLLLDE---GGKLTIGIGSQTGKSLLSQATQNQ 307 (1126)
T ss_pred cc---chhhhccCccchHHHHHhhhhccccccccchhhhhhhhhhhhcccccc---ccccccccccccccchhhhhhcCC
Confidence 98 899999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhhhccccCCCCchhhccchhhhhhcccCccccccccccCcccccccCCCCcchhhhhhhcccccCC
Q 000085 943 DSDQPFLCMLRMALLSMREEDNGEDSMFMRNVNMEDEMSEGLHRHASNIGSLDNSALLSTRKPRSALLWSVLSPVLNMPI 1022 (2342)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1022 (2342)
+++||+.||+||.++++|+|+.+|+.+++++++....... +-|+.|++.+.+++...+++.-.+|+.|+++.|+++||.
T Consensus 308 ~s~~~~~~~~~~~~l~~~~ek~~~~~~~~~~lss~~~~~~-~~~t~~~~~~~~~~s~~~~~es~~a~~~~~l~~l~~~~~ 386 (1126)
T KOG1787|consen 308 NSDQELLLLLRMDLLSLRQEKDIENSSLSEVLSSPANTIA-LEVTLGNLSSVDSESELSMRESPSASKKSLLKPLAYLEE 386 (1126)
T ss_pred CccchhhhhhhhhhhhccccccccccccceeeeccCCccc-eeeeccceeeecchhhhhhhcCchHHHHHhhhHHhcCcc
Confidence 9999999999999999999999999999999999998888 999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhhhhheeeehhhhhhhccchhhHHHHHhhcCCchhhhhhhccccccccccccccCCCCcccccccccccccc
Q 000085 1023 SDSKRQRVLVASCVLYSEVWHSVSRDRKTLRKQYLEAILPPFVAVLRRWRPLLAGIHELATADGLNPLILDDRALAADSL 1102 (2342)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1102 (2342)
...||+++++.+|.+|+++||+++.|..||+++|++.+.|+|.+|.|+|+++.+++|++... ++++++++++
T Consensus 387 ~~~k~~~~~~~a~~~~~~~~~~~~~~~~~l~~t~l~~~~p~~~~v~~~~~~l~~~~v~~~~g-----~~~~~~~~~~--- 458 (1126)
T KOG1787|consen 387 LHGKRLLELISAQFLQSILLHNISLDVFPLRRTSLMFESPSQDAVKRSGLLLPALGVLTSVG-----LVLPQRRLIS--- 458 (1126)
T ss_pred ccchHHHHHHHHHHHHHHhccchhhhHHHHHhhhhhhccCCccchhcccccccceeeeeecc-----ccccchhhhh---
Confidence 99999999999999999999999999999999999999999999999999999999765331 0000000000
Q ss_pred cHHHHHhhcChhhHhhhcCChHHHHHHHHHhcccCCCCCCCCccccccccccHHHhhhcceeecccccccccccCCCCCC
Q 000085 1103 PLEAAIAMISAPWAAAFASPPAAMALAMIAAGAAGGDAPAPVATSQLRRDTSLLERKQTRLYTFSSFQKTSEVTNKSSPL 1182 (2342)
Q Consensus 1103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1182 (2342)
T Consensus 459 -------------------------------------------------------------------------------- 458 (1126)
T KOG1787|consen 459 -------------------------------------------------------------------------------- 458 (1126)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchHHHHHHHHHHHhhHHHhhccCCCCCchHHhhhhhhhhcccccccccccccchhHHHHHHHHhcccccccccccccc
Q 000085 1183 PKDKASAKAAALAAARDLERNAKIGSGRGLSAVAMATSAQRRNASDTERVERWNISEAMGVAWMECLQPVDTKSVYGKDF 1262 (2342)
Q Consensus 1183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~w~~c~~~~~~~~~~~r~~ 1262 (2342)
T Consensus 459 -------------------------------------------------------------------------------- 458 (1126)
T KOG1787|consen 459 -------------------------------------------------------------------------------- 458 (1126)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcceeEeec
Q 000085 1263 NALSYKFIAVLVASFALARNMQRSEIDRRSQVDLISRHRWCTGMRAWRKLIHCLIEMKCLFGPFEDHLSDPRRIFWKLDF 1342 (2342)
Q Consensus 1263 ~e~~~k~~~~~v~~~~lar~~~R~E~~r~~~l~~~~~~r~~~a~r~W~ki~~~Lt~ERGlwGPw~~~~~s~~~~fWKLD~ 1342 (2342)
T Consensus 459 -------------------------------------------------------------------------------- 458 (1126)
T KOG1787|consen 459 -------------------------------------------------------------------------------- 458 (1126)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccceeecccCCCCCCccccccchhhcccCCCCCccCCCCCchhhHHHhhcccccCCccccccCCcccccccccCC
Q 000085 1343 MESSSRMRRCLRRNYMGSDHFGAAANYEDQIERKPGQENVINPSNAPIVAAEAISMEAVNEDDEQTENDNLDDRVYNLDN 1422 (2342)
Q Consensus 1343 tEd~sRMRrRLvRNy~fs~H~~Aaa~~e~~~~~~~~~~~~~~~~~~~i~~aeais~~~~~ed~e~~~~e~l~d~~~~~~~ 1422 (2342)
T Consensus 459 -------------------------------------------------------------------------------- 458 (1126)
T KOG1787|consen 459 -------------------------------------------------------------------------------- 458 (1126)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcccchHHHHHHhhhccCCCCCCCCccccccccccccCCCCCCCCCCceEEEEeeeeEeeeeeeeEEEEEEEeeEEE
Q 000085 1423 VGEDQTTVSEKIEQTLQASADSSDIPPARDQDLVSSSTAVLPGYVPSELDERIVFELPSSMVRPLRVIRGTFQVTTRRIN 1502 (2342)
Q Consensus 1423 ~~ed~~~~se~~~~~l~~s~~s~~~~~s~dq~l~~~~~~i~pg~~~~e~~EkVils~~c~mVtPl~v~~G~L~IT~~~Ly 1502 (2342)
T Consensus 459 -------------------------------------------------------------------------------- 458 (1126)
T KOG1787|consen 459 -------------------------------------------------------------------------------- 458 (1126)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCCCCCCCCccccccccceEeeccceeEEeeccccCcccEEEEEEeCCceEEEEcCChhhHHHHHHHHHhcCCCCC
Q 000085 1503 FIVDNTESPEEGTSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARPPHL 1582 (2342)
Q Consensus 1503 F~vd~~~~~~~~~~~~~~~~k~~~~~~~~I~~i~~Rr~~l~~~alEif~~~~~s~f~~F~~~~~~~~~~~~i~~~~~~~~ 1582 (2342)
T Consensus 459 -------------------------------------------------------------------------------- 458 (1126)
T KOG1787|consen 459 -------------------------------------------------------------------------------- 458 (1126)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccChHHHHHHHHHHHhcccCCCChHHHHHHHHHHhcCCcCCCCCCcccceeccCCCCCccCCCCCCccccCCCc
Q 000085 1583 NDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKP 1662 (2342)
Q Consensus 1583 ~~~~~~~~~~~~~~~~~~~t~~W~~g~ISNFeYLm~LN~~aGRS~nDl~QYPVFPWIl~dy~s~~ldL~~p~~~RDLsKP 1662 (2342)
...|.++++.+++|++|+.|+||||+|+|.||+.|||||||++|||||||++.||.++++|++.+.+||||+||
T Consensus 459 ------~~~P~qm~k~~~~t~~w~~~~~s~~~~l~~l~t~agrsyndl~qypvfpwvl~dy~s~~ld~s~~~~frdlsKp 532 (1126)
T KOG1787|consen 459 ------AATPVQMAKNSGITQEWQAREISNFEVLMQLNTSAGRSYNDLTQYPVFPWVLRDYSSETLDLSKLSTFRDLSKP 532 (1126)
T ss_pred ------hhCHHHHHHhcCccHHHHhhccccHHHHHHHHhccCcccCccccCCCCCeeeecccchhhhcccchhHHhhcCc
Confidence 00033444555668899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHhccCCCCCCCCCcccCCCCChhhHHhhhccCCCchhhhHhhhCCCCCCCCcccchHHHHHhhhhc
Q 000085 1663 VGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLE 1742 (2342)
Q Consensus 1663 iGal~~~r~~~~~~ry~~~~d~~~~~f~ygshyS~~~~V~~yL~R~ePft~l~i~lQ~g~fD~~dR~F~SI~~~w~~~~~ 1742 (2342)
||++|++|...|.+||++++|+.+|.||||+|||+++.|++||+|+||||++|+++|+|+|||+||.|+|+...|++|+.
T Consensus 533 igaln~~~~~~f~dry~s~~D~~i~~~~~~thys~~~~~l~~l~rvepf~S~~~~l~~gkfd~~dr~~~sv~~~~r~~l~ 612 (1126)
T KOG1787|consen 533 IGALNPKRAYLFRDRYESFEDQAIPSFHYGTHYSSAANVLAYLLRVEPFTSLHLQLQDGKFDHADRAFSSVASSWRRCLR 612 (1126)
T ss_pred ccCCCcccchhHhhhhhccccccccccccccccccccceeeeeeecCccccccccccccccccchhhHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccccccccCCCCCcccccCCCcCCCccCCCCCCChHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccc
Q 000085 1743 DMSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQ 1822 (2342)
Q Consensus 1743 ~~~dvkELIPEfFy~Pefl~N~n~~~lG~~q~g~~v~dV~LP~Wa~~p~~FI~~~R~aLES~~VS~~Lh~WIDLIFGyKQ 1822 (2342)
+.+|||||||||||+||+|.|.|.+++|.+++|+.|.||.|||||++|++|+..||+||||+|||.++|+||||||||||
T Consensus 613 d~sdvkelipeffy~p~ll~~~~~~~lg~~~dg~~vi~v~lppwa~~pe~f~~~nr~aLes~fvs~~l~~widlifg~Kq 692 (1126)
T KOG1787|consen 613 DTSDVKELIPEFFYFPELLVNSNLYNLGVRVDGEPVIDVVLPPWAKSPEDFETRNREALESEFVSCQLHQWIDLIFGYKQ 692 (1126)
T ss_pred chhhHHHhhhHHHHHHHHHhccccccceeecCCccceeeecccccCCHHHHHHHHHHHhhccccccccchhHHhhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcCccccccccccccccccCCCHHHH-HHHHHHHHHcCCCcccccccCCCCCCCCCccccccc-cccCC----C
Q 000085 1823 RGKEAISANNVFFYITYEGTVDIDKISDPVQQ-RAAQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHLQT-IFRNP----K 1896 (2342)
Q Consensus 1823 ~G~~Av~a~Nvf~~~tY~~~vd~~~i~d~~~~-~~~~~~i~~fGq~P~QLF~~pHp~R~~~~~v~~~~~-if~np----~ 1896 (2342)
+|++|++|.||||++||||+++++.++|+.++ .+++.||.+|||||.|+|.++||+|.+.....+.+. .|..- .
T Consensus 693 ~g~ea~~a~nvf~~~tyeG~v~~~~~~d~~~~~eai~~~i~~f~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~~ 772 (1126)
T KOG1787|consen 693 RGPEAVRAMNVFYYLTYEGAVDLDSITDQVLRTEAIEAQIASFGQTPSQLLQEQHPPRASESKLALPSALVFEDASQLDV 772 (1126)
T ss_pred cCHHHHHhhhhhccCCccccccccccCChhHHHHHHHHHHhhccccchhhhhhccCCcchhccccccccchhhhhhhhhh
Confidence 99999999999999999999999999999999 799999999999999999999999976543322111 11100 0
Q ss_pred CccccccCCc-cccCCCcccccccCCcEEEEecCCccceeeecccCCCCCCC--------CCCceeec-----CCCeEEe
Q 000085 1897 EVKPYAVPVP-ERCNLPAAAIHASSDTVVIVDMNAPAAHIARHNWQPNTPDG--------QGTPFLFQ-----HGKASAS 1962 (2342)
Q Consensus 1897 ~lK~~~vp~p-e~~n~p~s~I~~SsDsVV~Vd~N~~~~~la~~kW~p~t~dg--------~~s~flf~-----~Gk~LaS 1962 (2342)
.+++....++ .....+.......-++++.++.+ ..+..+.|++....+ ...+-+++ +.....+
T Consensus 773 ~~~~~~~s~s~~~v~aan~~~~~~~~~~~~~~~~---~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 849 (1126)
T KOG1787|consen 773 GIVLKRPSNSSVVVVAANTLFELCQPTVLGVRSL---LEFPRNISSPSVVVKRATEALRGARGSHLDQIPLATDEPLQLT 849 (1126)
T ss_pred hhccccCCCCcceeecccccccccccceeeeeee---EEeehhccccchhhhhhhHhhccCCccccccccccccchhhhh
Confidence 0111100000 00000000001111223322222 123445566521111 00000000 0000000
Q ss_pred cCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeE
Q 000085 1963 PASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVT 2042 (2342)
Q Consensus 1963 sSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~Vt 2042 (2342)
.+.. .+-.|... ...+| ...+.....+.++...-....|.++..-+|+...++...+.-.+|.+.|+
T Consensus 850 ~~~~-~v~r~~~~---~~~~~---------~~l~~~~~~vg~a~~~~~~~~~~~~~~~~v~~~~~~r~~~~~~~d~~vv~ 916 (1126)
T KOG1787|consen 850 ASNQ-FVARRLRD---DISDQ---------SYLVQLNLFVGRADNDIIQHPGFGDYSFRVYSTDSLRMRQSVFRDGDVVT 916 (1126)
T ss_pred hccc-eehhhccc---chhhe---------eeeeecceEEEeccCccccccCccccccceEeeehhhhccccccccceee
Confidence 1111 11111100 00011 11122223344444444566666777767777667777777888999999
Q ss_pred EEEecCC----CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC
Q 000085 2043 CLALSSD----SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG 2118 (2342)
Q Consensus 2043 cLAfSPD----G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G 2118 (2342)
|++.++. ..+.++++.|++|..|-+..- +..|..+..+.. ..+...+.+
T Consensus 917 ~~ar~~~~l~~~~~~~s~s~D~tI~~~~~s~~-------------------~~~g~~~~~~s~--------~~e~~~lt~ 969 (1126)
T KOG1787|consen 917 CGARLEQYLAALQYPVSSSEDGTIPLLYWSHI-------------------SSIGDIVVSGSA--------PEEFTTLTG 969 (1126)
T ss_pred eeecccccccccccccccCCCcceeeeeeccc-------------------cccccccccccc--------cCccchhee
Confidence 9999874 467999999999999987620 011111111111 134556677
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2119 HHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2119 Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
|.....+...++....++.++.++...+..+.
T Consensus 970 ~~~~~~~~~~~~~~s~v~~~~~~~~~~i~~~~ 1001 (1126)
T KOG1787|consen 970 QEASGKFSLVDAELSLVISGAKGGLCLIHLVG 1001 (1126)
T ss_pred cccceeeeecchhhhhhhhhcccccceeeeec
Confidence 77777777777777778888888877777753
No 2
>cd06071 Beach BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins.
Probab=100.00 E-value=7.2e-96 Score=858.71 Aligned_cols=275 Identities=61% Similarity=1.089 Sum_probs=268.2
Q ss_pred HHhcccCCCChHHHHHHHHHHhcCCcCCCCCCcccceeccCCCCCccCCCCCCccccCCCccccCCHHHHHHHHHHhccC
Q 000085 1602 MERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSF 1681 (2342)
Q Consensus 1602 t~~W~~g~ISNFeYLm~LN~~aGRS~nDl~QYPVFPWIl~dy~s~~ldL~~p~~~RDLsKPiGal~~~r~~~~~~ry~~~ 1681 (2342)
|++|++|+||||||||+||.+|||||||++||||||||++||+|+++||+|+.+||||+|||||||++|++.+++||+++
T Consensus 1 T~~W~~g~iSNfeYL~~LN~~sGRSf~D~sqYPIfPWvi~dy~s~~ldl~~~~~~RDLskpigal~~~r~~~~~~~~~~~ 80 (275)
T cd06071 1 TKKWQNGEISNFEYLMYLNTLAGRSFNDLSQYPIFPWVISDYTSEELDLNDPSTYRDLSKPIGALNKERLQLLKERYESD 80 (275)
T ss_pred CchhhcCCccHHHHHHHHHHHhCCCCCCcccCCccCeeecCCCCcccccCCcccccCCCCchhhcCHHHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCcccCCCCChhhHHhhhccCCCchhhhHhhhCCCCCCCCcccchHHHHHhhhhcCCCCccccccccccccccc
Q 000085 1682 DDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEIL 1761 (2342)
Q Consensus 1682 ~d~~~~~f~ygshyS~~~~V~~yL~R~ePft~l~i~lQ~g~fD~~dR~F~SI~~~w~~~~~~~~dvkELIPEfFy~Pefl 1761 (2342)
.....++||||+|||++++|++||+|+||||++|+.||+|+||+|||||+||.++|++++++++|++||||||||+||||
T Consensus 81 ~~~~~~~~~y~shyS~~~~V~~yLvR~ePft~~~~~lq~g~fd~~~RlF~si~~~~~~~~~~~~d~~ELIPEFf~~Pe~f 160 (275)
T cd06071 81 SDDSDPPFHYGSHYSNPAIVLYYLVRLEPFTTLHLSLQGGHFDAADRLFNSIPSSWRSASENPSDVKELIPEFYYLPEFF 160 (275)
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHhHcCCccHHHHHHhcCCcCCcccchhhHHHHHHHHHccCCCcccCCchHhcCHHHH
Confidence 77778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccccCCCcCCCccCCCCCCChHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchhhhhcCcccccccccc
Q 000085 1762 TNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEG 1841 (2342)
Q Consensus 1762 ~N~n~~~lG~~q~g~~v~dV~LP~Wa~~p~~FI~~~R~aLES~~VS~~Lh~WIDLIFGyKQ~G~~Av~a~Nvf~~~tY~~ 1841 (2342)
+|.|+++||+ |+|+.++||+||+||++|++||++||+||||+|||+|||+||||||||||+|++|++|.|||||++|++
T Consensus 161 ~N~n~~~lg~-~~g~~~~DV~LP~Wa~s~~~FV~~~R~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~Nvf~p~~Y~~ 239 (275)
T cd06071 161 LNINKFDFGK-QDGEKVNDVELPPWAKSPEEFIRKHREALESEYVSKNLHHWIDLIFGYKQRGEEAVKAKNVFHPLTYEG 239 (275)
T ss_pred hCCCcccccc-cCCCcccceecCCCcCCHHHHHHHHHHHHcccHhhhhhhhhhhhhcccccCCHHHHHhcCCCcccccCC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 000085 1842 TVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKK 1879 (2342)
Q Consensus 1842 ~vd~~~i~d~~~~~~~~~~i~~fGq~P~QLF~~pHp~R 1879 (2342)
.++.+.+. .++.++++++.+|||+|.|||++|||+|
T Consensus 240 ~~~~~~~~--~~~~~~~~~~~~~Gq~P~QLF~~pHP~R 275 (275)
T cd06071 240 SVDLDSID--VEREAIEAQINNFGQTPVQLFTKPHPKR 275 (275)
T ss_pred ccccchhh--HHHHHHHHHHHhcCCCcchhccCCCCCC
Confidence 98766544 7899999999999999999999999998
No 3
>PF02138 Beach: Beige/BEACH domain; InterPro: IPR000409 The BEACH domain is found in eukaryotic proteins that have diverse cellular functions ranging from lysosomal traffic to apoptosis and cytokinesisin vesicle trafficking, membrane dynamics, and receptor signaling. The name BEACH is derived from beige and Chediak-Higashi syndrome (CHS). CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in humans and other mammals, and beige is the name for the CHS disease in mice [, ]. The BEACH domain was first described in the lysosomal-trafficking regulators Beige protein and its human homologue CHS protein Q99698 from SWISSPROT. It is also found in distantly related proteins like, for example, the FAN proteins O35242 from SWISSPROT and Q92636 from SWISSPROT which are factor associated with neutral sphingomyelinase activation []. It has also been described in Dictyostelium proteins Lvs []. The BEACH domain is usually followed by a series of WD repeats (PDOC00574 from PROSITEDOC). The function of the BEACH domain is unknown.; PDB: 1MI1_B 1T77_C.
Probab=100.00 E-value=1.3e-92 Score=832.56 Aligned_cols=270 Identities=62% Similarity=1.112 Sum_probs=200.2
Q ss_pred HHhcccCCCChHHHHHHHHHHhcCCcCCCCCCcccceeccCCCCCccCCCCCCccccCCCccccCCHHHHHHHHHHhccC
Q 000085 1602 MERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSF 1681 (2342)
Q Consensus 1602 t~~W~~g~ISNFeYLm~LN~~aGRS~nDl~QYPVFPWIl~dy~s~~ldL~~p~~~RDLsKPiGal~~~r~~~~~~ry~~~ 1681 (2342)
|++|++|+||||||||+||.+|||||||++||||||||++||+|+++||+|+.+||||+|||||||++|+++++++|+++
T Consensus 1 T~~W~~g~iSNfeYL~~LN~~aGRSf~D~sqYPIFPWv~~dy~s~~ldl~~~~~~RdLskPiga~~~~r~~~~~~~~~~~ 80 (270)
T PF02138_consen 1 TEKWQNGEISNFEYLMYLNILAGRSFNDLSQYPIFPWVISDYDSEELDLNDPSNYRDLSKPIGAQNEERLEKLKERYEEM 80 (270)
T ss_dssp HHHHHTTSS-HHHHHHHHHHHCT--TT-GGG---B---B---SSSS--TT-GGGB--TTS-HHHCSHHHHHHHHHHHHC-
T ss_pred CcchhcCCCcHHHHHHHHhHHhccCCCCCccCccccchhccCCccccccCCccccccccccccccCHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCCCcccCCCCChhhHHhhhccCCCchhhhHhhhCCCCCCCCcccchHHHHHhhhhcCCCCccccccccccccccc
Q 000085 1682 DDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEIL 1761 (2342)
Q Consensus 1682 ~d~~~~~f~ygshyS~~~~V~~yL~R~ePft~l~i~lQ~g~fD~~dR~F~SI~~~w~~~~~~~~dvkELIPEfFy~Pefl 1761 (2342)
++. .++||||+|||++++|++||+|+||||++|+.||+|+||++||+|+||.++|++++++++|++||||||||+||||
T Consensus 81 ~~~-~~~~~y~s~ys~~~~v~~~L~R~ePft~l~~~lq~g~fD~~~r~F~SI~~~~~~~~~~~~d~~EliPEff~~Pe~f 159 (270)
T PF02138_consen 81 EEF-EPPFHYGSHYSSPGTVLYYLVRLEPFTSLHIDLQSGKFDVPDRLFSSIEDTWNSVTENMNDVKELIPEFFYLPEFF 159 (270)
T ss_dssp -SS-S---SBSS-SS-HHHHHHHTTTSTTHHHHHHHCCTTS---CCCSS-BHHHHHHHHHH-TT----B-GGGGT-GGGG
T ss_pred hcc-CCCccccCCCCCcchhhhhhcccChHHHHHHHHhccccCCchHHHHHHHHHHHHhhcCCccccccChhhhCCHHHh
Confidence 543 3799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccccCCCcCCCccCCCCCCChHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchhhhhcCcccccccccc
Q 000085 1762 TNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEG 1841 (2342)
Q Consensus 1762 ~N~n~~~lG~~q~g~~v~dV~LP~Wa~~p~~FI~~~R~aLES~~VS~~Lh~WIDLIFGyKQ~G~~Av~a~Nvf~~~tY~~ 1841 (2342)
.|.|+|+||+ |+.|+||+||+||++|++||++||+||||+|||++||+||||||||||+|++|++|.|||||++|++
T Consensus 160 ~N~n~~~~g~---~~~~~dV~LP~Wa~s~~~FV~~~R~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~Nvf~p~~Y~~ 236 (270)
T PF02138_consen 160 KNINNFDLGK---GEDVDDVELPPWAKSPFEFVYKHRKALESDYVSQNLHHWIDLIFGYKQRGKEAVEAKNVFHPLTYED 236 (270)
T ss_dssp S-TT-SS--B---S-B-SS-B--TT-SSHHHHHHHHHHHHCSHHHHTTHHHHHHHHTSCCCSCHHHHHTT--B-CCCSTT
T ss_pred cccccccccC---CCccceeecCCccchHHHHHHHHHHHHhhhHHHhhhhHHHHHhhCcccccHHHHHHhhcccccCCCc
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 000085 1842 TVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKK 1879 (2342)
Q Consensus 1842 ~vd~~~i~d~~~~~~~~~~i~~fGq~P~QLF~~pHp~R 1879 (2342)
.+ +.|+.++.++++++.+|||+|.|||++|||+|
T Consensus 237 ~~----~~~~~~~~~~~~~~~~~Gq~P~QLF~~pHP~R 270 (270)
T PF02138_consen 237 SW----IEDPMEREAIEAQLKNFGQVPIQLFTKPHPKR 270 (270)
T ss_dssp S-------SHHHHHHHHHHHHHC--------SS-----
T ss_pred cc----cCCHHHHHHHHHHHHhcCCChHHHhCCCCCCC
Confidence 87 67899999999999999999999999999998
No 4
>KOG1786 consensus Lysosomal trafficking regulator LYST and related BEACH and WD40 repeat proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-55 Score=590.23 Aligned_cols=358 Identities=33% Similarity=0.511 Sum_probs=321.7
Q ss_pred eEeeccceeEEeeccccCcccEEEEEEeCCceEEEEcCChhhHHHHHHHHHhcCCCCCcccc--ccccChHH--------
Q 000085 1525 RSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARPPHLNDIY--LATQRPEQ-------- 1594 (2342)
Q Consensus 1525 ~~~~~~~I~~i~~Rr~~l~~~alEif~~~~~s~f~~F~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~-------- 1594 (2342)
..|....+..+++|.++++..|.++|-.++....+.|+. ..|...|+.+.....+-...+. .....+.-
T Consensus 251 ~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~-~i~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 329 (1081)
T KOG1786|consen 251 DLIDAFLISLVLKRLVLLRLIALSVFSSLGRVTLLVLPK-LIRKSLFDKLLAHPSRENSSGLLELCLRFPMLLSGGFRLL 329 (1081)
T ss_pred ccchhhhhhhHHHHHHHhhhhHHHhhhcccceeecccch-hHHhhhhhhhhccCccccchhhhhhcchhhhhhhcccccc
Confidence 344567788999999999999999999999999999965 5677777776544332211110 00111111
Q ss_pred --HHHHHHHHHhcccCCCChHHHHHHHHHHhcCCcCCCCCCcccceeccCCCCCccCCCCCCccccCCCccccCCHHHHH
Q 000085 1595 --LLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLK 1672 (2342)
Q Consensus 1595 --~~~~~~~t~~W~~g~ISNFeYLm~LN~~aGRS~nDl~QYPVFPWIl~dy~s~~ldL~~p~~~RDLsKPiGal~~~r~~ 1672 (2342)
+.....++.+|.+|+++||+|||+||+++||+++|++|||||||++.+|+++.+|+.||.++|++.||+|++++++.+
T Consensus 330 ~~~~~~~s~~~~W~~~~~~n~~yl~~ln~l~~r~~~~~~~~pi~pw~~~~~~~~~l~~~d~~~~r~~~~~~~~~s~e~~~ 409 (1081)
T KOG1786|consen 330 SRFKSLKSAFGRWLSGELENFQYLMHLNTLAGRSIADLAQYPIFPWVLAFYDFSGLDLLDPLTARKLLKLGGHQSDEGYE 409 (1081)
T ss_pred chhhhhhhhhcccccCchhhhhhhhhcCcccccchhhhccCcccceeeccccccchhhcChHhhhhhhhccCCCCHHHHH
Confidence 111467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCC--CCCCCcccCCCCChhhHHhhhccCCCchhhhHhhhCCCCCCCCcccchHHHHHhhhhc-CC-CCcc
Q 000085 1673 KFQERYSSFDDP--VIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLE-DM-SDVK 1748 (2342)
Q Consensus 1673 ~~~~ry~~~~d~--~~~~f~ygshyS~~~~V~~yL~R~ePft~l~i~lQ~g~fD~~dR~F~SI~~~w~~~~~-~~-~dvk 1748 (2342)
.+..||+++.|+ ..|.|||++||+++.+++.|++|.+|++.+++.+|+|.|+++||+|+++.++|.++.. ++ ++++
T Consensus 410 ~~~~r~~~~~d~~~~~~~~~~~t~~~S~~~~~~y~~r~~p~~~~~~~i~~~~~~~~d~~~~s~~~~Wt~~~~~~~~~~i~ 489 (1081)
T KOG1786|consen 410 RFAKRFEEWLDQNAEDPLFHVLTHLLSPLIVMSYFARKNPLSELFLSIRRGYFPIADRLFHSRMQAWTPDEKGNLHSCIK 489 (1081)
T ss_pred HHhhhhhhhhccccccccccccccccchhhhhhhhhhcCcchHHHHHhhcccccccchhhhhhhcccCcccccccchhHH
Confidence 999999999886 5689999999999999999999999999999999999999999999999999997662 23 7999
Q ss_pred cccccccccccccccCCCCCcccccCCCcCCCccCCCCCC-ChHHHHHHHHHHhhhhhhhhhhhhhhhhh-hhccccchh
Q 000085 1749 ELVPELFYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAE-NPVDFIHKHRMALESDYVSAHLHEWVDLI-FGYKQRGKE 1826 (2342)
Q Consensus 1749 ELIPEfFy~Pefl~N~n~~~lG~~q~g~~v~dV~LP~Wa~-~p~~FI~~~R~aLES~~VS~~Lh~WIDLI-FGyKQ~G~~ 1826 (2342)
|||||||+.|+||.|.+.+++|++|+|..++||.|||||. .|++||++||+|||++|||++||+|||++ |||||.|++
T Consensus 490 eli~~~~~~p~~l~n~~~~~lg~~~~~~~~~~~~lP~ws~~~~~~fi~~h~~ale~~~vs~~Lh~wId~~~fgykq~g~~ 569 (1081)
T KOG1786|consen 490 ELIPKFVNDPSFLENSVILDLGEKQNGDSVDDVILPPWSSSSPREFIRDHRKALESNRVSQRLHHWIDLTIFGYKQNGSA 569 (1081)
T ss_pred HHHHHhccChHHHhhhhhhhhhhhcccccccceecCcccccCHHHHHHHHhhcccccchhhccccceeeehhhhhhcchH
Confidence 9999999999999999999999999999999999999999 69999999999999999999999999999 999999999
Q ss_pred hhhcCcccc----ccccccccccccCCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 000085 1827 AISANNVFF----YITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLG 1883 (2342)
Q Consensus 1827 Av~a~Nvf~----~~tY~~~vd~~~i~d~~~~~~~~~~i~~fGq~P~QLF~~pHp~R~~~~ 1883 (2342)
|+.+.|||+ +++|++.+|.+.+.|+..+.+++.++.+|||+|+|+|.++|+++...+
T Consensus 570 ~~~~~nv~~~~~~~l~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~h~~~~~~~ 630 (1081)
T KOG1786|consen 570 AVIAMNVFLVSNKHLFYVNSVLNLRGYDPLEQNILIVSNNHFKQTIKQLFPKKHSVSELTE 630 (1081)
T ss_pred HHHHHHHHhhhhhhhccccchhhhcccchhhhhhhHHHhhccccchhhcccccccccccch
Confidence 999999999 999999999999999999999999999999999999999999887653
No 5
>KOG1787 consensus Kinase A-anchor protein Neurobeachin and related BEACH and WD40 repeat proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-43 Score=461.02 Aligned_cols=652 Identities=20% Similarity=0.085 Sum_probs=511.1
Q ss_pred cHHHHHh-hcChhhHhhhcCChHHHHHHHHHhcccCCCCCCCCccccccccccHHHhhhcceeecccccccccccC-CCC
Q 000085 1103 PLEAAIA-MISAPWAAAFASPPAAMALAMIAAGAAGGDAPAPVATSQLRRDTSLLERKQTRLYTFSSFQKTSEVTN-KSS 1180 (2342)
Q Consensus 1103 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 1180 (2342)
|+|.+.+ ||++.|+++++|+|.+|.++|++||+++++...+|..+..+||.+..|++..++.||.|++||++..+ +..
T Consensus 462 P~qm~k~~~~t~~w~~~~~s~~~~l~~l~t~agrsyndl~qypvfpwvl~dy~s~~ld~s~~~~frdlsKpigaln~~~~ 541 (1126)
T KOG1787|consen 462 PVQMAKNSGITQEWQAREISNFEVLMQLNTSAGRSYNDLTQYPVFPWVLRDYSSETLDLSKLSTFRDLSKPIGALNPKRA 541 (1126)
T ss_pred HHHHHHhcCccHHHHhhccccHHHHHHHHhccCcccCccccCCCCCeeeecccchhhhcccchhHHhhcCcccCCCcccc
Confidence 7888888 99999999999999999999999999999999999999999999999999999999999999999988 889
Q ss_pred CCccchHHHHHHHHHHHhhHHHhhccCCCCCchHHhhhhhhhhcccccccccccccchhHHHHHHHHhcccccccccccc
Q 000085 1181 PLPKDKASAKAAALAAARDLERNAKIGSGRGLSAVAMATSAQRRNASDTERVERWNISEAMGVAWMECLQPVDTKSVYGK 1260 (2342)
Q Consensus 1181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~w~~c~~~~~~~~~~~r 1260 (2342)
.+..|+.+++.....++++.. .++++.+|+.++.|++..++++..++++-+.||...+|...|++|.+.+...+.++.
T Consensus 542 ~~f~dry~s~~D~~i~~~~~~--thys~~~~~l~~l~rvepf~S~~~~l~~gkfd~~dr~~~sv~~~~r~~l~d~sdvke 619 (1126)
T KOG1787|consen 542 YLFRDRYESFEDQAIPSFHYG--THYSSAANVLAYLLRVEPFTSLHLQLQDGKFDHADRAFSSVASSWRRCLRDTSDVKE 619 (1126)
T ss_pred hhHhhhhhccccccccccccc--cccccccceeeeeeecCccccccccccccccccchhhHHHHHHHHhhhccchhhHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999988889999
Q ss_pred cccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcceeEe
Q 000085 1261 DFNALSYKFIAVLVASFALARNMQRSEIDRRSQVDLISRHRWCTGMRAWRKLIHCLIEMKCLFGPFEDHLSDPRRIFWKL 1340 (2342)
Q Consensus 1261 ~~~e~~~k~~~~~v~~~~lar~~~R~E~~r~~~l~~~~~~r~~~a~r~W~ki~~~Lt~ERGlwGPw~~~~~s~~~~fWKL 1340 (2342)
.++|.-|++ +.+.++..+.+..|...-....--..+-|..-|+.+.+...-.+..|++.....+-+...+||+
T Consensus 620 lipeffy~p-------~ll~~~~~~~lg~~~dg~~vi~v~lppwa~~pe~f~~~nr~aLes~fvs~~l~~widlifg~Kq 692 (1126)
T KOG1787|consen 620 LIPEFFYFP-------ELLVNSNLYNLGVRVDGEPVIDVVLPPWAKSPEDFETRNREALESEFVSCQLHQWIDLIFGYKQ 692 (1126)
T ss_pred hhhHHHHHH-------HHHhccccccceeecCCccceeeecccccCCHHHHHHHHHHHhhccccccccchhHHhhhhHhh
Confidence 999999888 5566667777777776644443334444567788887666555666887777666666789999
Q ss_pred eccCCccccceeecccCCCCCCccccccchhhcccCCCCCccCCCCCchhhHHHhhcccccCCcccccc--CCccccccc
Q 000085 1341 DFMESSSRMRRCLRRNYMGSDHFGAAANYEDQIERKPGQENVINPSNAPIVAAEAISMEAVNEDDEQTE--NDNLDDRVY 1418 (2342)
Q Consensus 1341 D~tEd~sRMRrRLvRNy~fs~H~~Aaa~~e~~~~~~~~~~~~~~~~~~~i~~aeais~~~~~ed~e~~~--~e~l~d~~~ 1418 (2342)
+-.|.-.||+-...++|-|..|.+...+..+.. +++......++..... .+...++.
T Consensus 693 ~g~ea~~a~nvf~~~tyeG~v~~~~~~d~~~~~--------------------eai~~~i~~f~~~~~~~~~e~~~~~~- 751 (1126)
T KOG1787|consen 693 RGPEAVRAMNVFYYLTYEGAVDLDSITDQVLRT--------------------EAIEAQIASFGQTPSQLLQEQHPPRA- 751 (1126)
T ss_pred cCHHHHHhhhhhccCCccccccccccCChhHHH--------------------HHHHHHHhhccccchhhhhhccCCcc-
Confidence 999999999999999999999988776643321 2222222222111100 00000000
Q ss_pred ccCCcC-CCcccchHHHHHHhhhccCCCCCCCCccccccccccccCCCCCCCCCCceEEEEeeeeEeeeeeeeEEEEEEE
Q 000085 1419 NLDNVG-EDQTTVSEKIEQTLQASADSSDIPPARDQDLVSSSTAVLPGYVPSELDERIVFELPSSMVRPLRVIRGTFQVT 1497 (2342)
Q Consensus 1419 ~~~~~~-ed~~~~se~~~~~l~~s~~s~~~~~s~dq~l~~~~~~i~pg~~~~e~~EkVils~~c~mVtPl~v~~G~L~IT 1497 (2342)
..+. ++. ..................+++.........+.+.++. .++.+-++
T Consensus 752 --~~~~~~~~--~~~~~~~a~~~~~~~~~~~~s~s~~~v~aan~~~~~~-----------------------~~~~~~~~ 804 (1126)
T KOG1787|consen 752 --SESKLALP--SALVFEDASQLDVGIVLKRPSNSSVVVVAANTLFELC-----------------------QPTVLGVR 804 (1126)
T ss_pred --hhcccccc--ccchhhhhhhhhhhhccccCCCCcceeeccccccccc-----------------------ccceeeee
Confidence 0000 000 0000000000000000000000000000000111111 11111111
Q ss_pred eeEEEEEeCCCCCCCCCCccccccccceEeeccceeEEeeccccCcccEEEEEEeCCceEEEEcCChhhHHHHHHHHHhc
Q 000085 1498 TRRINFIVDNTESPEEGTSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAIVQA 1577 (2342)
Q Consensus 1498 ~~~LyF~vd~~~~~~~~~~~~~~~~k~~~~~~~~I~~i~~Rr~~l~~~alEif~~~~~s~f~~F~~~~~~~~~~~~i~~~ 1577 (2342)
.... |..+..+.+ .+.. ++...+.+.
T Consensus 805 ~~~~------------------------------------------------~~~n~~~~~-~~~~-----~~~~~~~~~ 830 (1126)
T KOG1787|consen 805 SLLE------------------------------------------------FPRNISSPS-VVVK-----RATEALRGA 830 (1126)
T ss_pred eeEE------------------------------------------------eehhccccc-hhhh-----hhhHhhccC
Confidence 1110 111111111 1100 445667777
Q ss_pred CCCCCccccccccChHHHHHHHHHHHhcccCCCChHHHHHHHHHHhcCCcCCCCCCcccceeccCCCCCccCCCCCCccc
Q 000085 1578 RPPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYR 1657 (2342)
Q Consensus 1578 ~~~~~~~~~~~~~~~~~~~~~~~~t~~W~~g~ISNFeYLm~LN~~aGRS~nDl~QYPVFPWIl~dy~s~~ldL~~p~~~R 1657 (2342)
+++++..++..+..+........++.+|+...+++|.|||++|++.||++|+.++||.|||+..++-+...|+-.+..||
T Consensus 831 ~~~~~~~~~l~~~~~~~~~~~~~~v~r~~~~~~~~~~~l~~~~~~vg~a~~~~~~~~~~~~~~~~v~~~~~~r~~~~~~~ 910 (1126)
T KOG1787|consen 831 RGSHLDQIPLATDEPLQLTASNQFVARRLRDDISDQSYLVQLNLFVGRADNDIIQHPGFGDYSFRVYSTDSLRMRQSVFR 910 (1126)
T ss_pred CccccccccccccchhhhhhccceehhhcccchhheeeeeecceEEEeccCccccccCccccccceEeeehhhhcccccc
Confidence 78888888888877777777888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-ccccCCHHHHHHHHHHhccCCCCCCCCCcccCCCCChhhHHhhhccCCCchhhhHhhhCCCCCCCCcccchHHHH
Q 000085 1658 DLSK-PVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAAT 1736 (2342)
Q Consensus 1658 DLsK-PiGal~~~r~~~~~~ry~~~~d~~~~~f~ygshyS~~~~V~~yL~R~ePft~l~i~lQ~g~fD~~dR~F~SI~~~ 1736 (2342)
|..+ +++++++.+++.+...+....|+.++.+||+ ||++.+-+.+|.-+.+||+.+.+++++++||+.+++|..+...
T Consensus 911 d~~vv~~~ar~~~~l~~~~~~~s~s~D~tI~~~~~s-~~~~~g~~~~~~s~~~e~~~lt~~~~~~~~~~~~~~~s~v~~~ 989 (1126)
T KOG1787|consen 911 DGDVVTCGARLEQYLAALQYPVSSSEDGTIPLLYWS-HISSIGDIVVSGSAPEEFTTLTGQEASGKFSLVDAELSLVISG 989 (1126)
T ss_pred ccceeeeeecccccccccccccccCCCcceeeeeec-cccccccccccccccCccchheecccceeeeecchhhhhhhhh
Confidence 9999 9999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCcccccccccccccccccCCCCCcccccCCCcCCCccCCCCCCChHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 000085 1737 WNGVLEDMSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDL 1816 (2342)
Q Consensus 1737 w~~~~~~~~dvkELIPEfFy~Pefl~N~n~~~lG~~q~g~~v~dV~LP~Wa~~p~~FI~~~R~aLES~~VS~~Lh~WIDL 1816 (2342)
|+.....+..++++.+.-++.|+++++.+...++.+.+...+..+..|.|+..+-. .+|...|.-+.++||+|
T Consensus 990 ~~~~~~~i~~~~gl~l~~~~~~~~~~~~~~~s~s~t~~~l~l~~~~~~v~~t~~~~-------~~~~~~I~v~~~~~~~l 1062 (1126)
T KOG1787|consen 990 AKGGLCLIHLVGGLLLRLLEHPINLSILGLISLSETINCLELYEPGRFVNYTKNGK-------DDEQRHIEVGSEDEILL 1062 (1126)
T ss_pred cccccceeeeecchhhhcccCccceechhhhhhcccccchhhccccccceeccccc-------cccccceEeecccchhh
Confidence 99999999999999999999999999999999999999999999999999987655 89999999999999999
Q ss_pred hhhccccchhhhhcCccccccccccccccccCCCHHHHHHH--HHHHHHcCCCcccccccCCCCCC
Q 000085 1817 IFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAA--QDQIAYFGQTPSQLLTVPHMKKM 1880 (2342)
Q Consensus 1817 IFGyKQ~G~~Av~a~Nvf~~~tY~~~vd~~~i~d~~~~~~~--~~~i~~fGq~P~QLF~~pHp~R~ 1880 (2342)
+|| +..+++.+.+..|.....+..++.+..++.+ -.++..+++++.+.-..+|-.|.
T Consensus 1063 ~~~-------~~~~~~~~~~i~~~~~~~i~~~s~~~sq~~~~~~~~~~~~~~~~~~fn~~~~~~~~ 1121 (1126)
T KOG1787|consen 1063 TGG-------WQMANLEKLYIYFGNGAGIPAISLTFSQRLLFSGDRSDSISAFESDFNRWHYESRS 1121 (1126)
T ss_pred cch-------hhhccccceEEEecCCCCccccccccchhhhhcCccccchhccchhhccccccccc
Confidence 999 7889999999999999999999998888876 33455666667665555544443
No 6
>KOG1786 consensus Lysosomal trafficking regulator LYST and related BEACH and WD40 repeat proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-38 Score=429.44 Aligned_cols=262 Identities=42% Similarity=0.750 Sum_probs=221.2
Q ss_pred cceEeeccceeEEeeccccCcccEEEEEEeCCceEEEEcCChhhHHHHHHHHHhcCCCCCccccccccChHHHHHHHHHH
Q 000085 1523 KDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARPPHLNDIYLATQRPEQLLKRTQLM 1602 (2342)
Q Consensus 1523 k~~~~~~~~I~~i~~Rr~~l~~~alEif~~~~~s~f~~F~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~t 1602 (2342)
.+..|.+++.+ |..+.++-|++..+.+..++++.+... .+....... . ...-....++
T Consensus 819 ~~~i~~Ls~~~------~~~ql~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~-----------~---~~~~~~~a~~ 876 (1081)
T KOG1786|consen 819 TVIIWDLSTLR------FQRQLTAFEILLSNLRILRLGGENASI--SAFTSVLSA-----------N---QIIGDLLAIT 876 (1081)
T ss_pred ceeeehhhhhh------hhhccccccchhHHHHHHHhccchhhh--hhhhhhhcc-----------c---ccccchhhhh
Confidence 45666666655 777888899988888888887765433 111111111 0 1111234568
Q ss_pred HhcccCCCChHHHHHHHHHHhcCCcCCCCCCcccceeccCCCCCccCCCCCCccccCCCccccCCHHHHHHHHHHhccCC
Q 000085 1603 ERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFD 1682 (2342)
Q Consensus 1603 ~~W~~g~ISNFeYLm~LN~~aGRS~nDl~QYPVFPWIl~dy~s~~ldL~~p~~~RDLsKPiGal~~~r~~~~~~ry~~~~ 1682 (2342)
++|..|+|+||+|++.+|.+|||||||++||||||||++||.++.+||.+..+||+|++||+++ .+.+.+ +.+++
T Consensus 877 ~~~~~~~~~n~~y~~~~~~~agrs~nd~~q~~v~~~~~ad~~~k~~~l~~~~~~~~~~r~~a~~----~~~~~~-~~~~~ 951 (1081)
T KOG1786|consen 877 NTWEEGLISNFEYLTMLNLLAGRSFNDWMQYPVFPWVLADYVSKVLDLQDLLIYRDLSRPIAVQ----KEKLEE-HHSWE 951 (1081)
T ss_pred hhhccccccchHHHHHHHHhhcCcHHHhhcCcceEEEecccceeeEeeeccccccccccchhHH----HHHHhh-hhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999932 222333 33344
Q ss_pred CCCCCCCcccCCCCChhhHHhhhccCCCchhhhHhhhCCCCCCCCcccchHHHHHhhhh-cCCCCccccccccccccccc
Q 000085 1683 DPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVL-EDMSDVKELVPELFYLPEIL 1761 (2342)
Q Consensus 1683 d~~~~~f~ygshyS~~~~V~~yL~R~ePft~l~i~lQ~g~fD~~dR~F~SI~~~w~~~~-~~~~dvkELIPEfFy~Pefl 1761 (2342)
-....+||||+|||++++|.+|++|+.|||.+++.+|+|.||.+||.||++..+|.... ++++|+|||+| |||+|||+
T Consensus 952 ~e~~~~~~~~~~~s~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~dr~f~~l~~~~~~~~~~s~td~kel~p-~f~~pe~l 1030 (1081)
T KOG1786|consen 952 SEDTEPYHYGSHYSNSGTVSHFLIRLPPFTEMFLSLQDGRFDFPDRLFHSLETAWSLASIESSTDVKELIP-FFYLPEFL 1030 (1081)
T ss_pred hhccCCccccccccCccccccccccCCchHHHHHHhccCcCCCcccccccccccccccccccccchhhccc-cccCccee
Confidence 33447899999999999999999999999999999999999999999999999999765 57999999999 99999999
Q ss_pred ccCCCCCcccccCCCcCCCccCCCCCCChHHHHHHHHHHhhhhhhhhhhhhhhh
Q 000085 1762 TNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVD 1815 (2342)
Q Consensus 1762 ~N~n~~~lG~~q~g~~v~dV~LP~Wa~~p~~FI~~~R~aLES~~VS~~Lh~WID 1815 (2342)
.|.|+++||++|+|++++||.+ --+|+-||++||.||||+||+.++|+|||
T Consensus 1031 ~n~~~~d~g~~qn~~~~~~~~~---~~~~~~~i~~hr~al~s~~v~~~~~~~i~ 1081 (1081)
T KOG1786|consen 1031 RNRNGFDFGERQNGERVNDVVL---RGDPRSFILIHRQALESEYVSSNLHTWID 1081 (1081)
T ss_pred ecCCccccCcccCCCcccceee---ccchHHHHHHHHHhhhcccccccceeccC
Confidence 9999999999999999999999 55899999999999999999999999998
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-33 Score=327.13 Aligned_cols=312 Identities=19% Similarity=0.193 Sum_probs=257.9
Q ss_pred ceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEec
Q 000085 1988 ALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1988 sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl 2067 (2342)
++.+|... |-|+.|+|+|..|++|+.|.++|+||+.+..+..+.+||...|.|++|+|||+.|+||+.||+|++||.
T Consensus 110 S~~GH~e~---Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 110 SIAGHGEA---VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred ccCCCCCc---EEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 34444444 556999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccccCCCCCCccccccC-----CCCCceeecCCCc-cccccC--CceEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2068 HRAFTSRTGTIEPSSGMGTPGNSI-----GSSTPANASADKS-RRRRIE--GPIHVLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~svs~Sp-----DG~~Las~s~D~s-~~~~i~--~~l~~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
.++.+......+|...+.+++|.| ..+.+++++.|+. ++|++. .++..+.||+.+|+|++|--+ .+++|||
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS 265 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGS 265 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecC
Confidence 999887777788999999998875 6678888888876 558774 488999999999999999654 4899999
Q ss_pred CCCcEEEEECCCCeEEEEEecCC--cEEEEEe-----------cCC-------------------------cEEEEEeCC
Q 000085 2140 DSSDLLLHSIRRGRLIRRLVGVD--AHAVSLS-----------SEG-------------------------VIMTWNKLQ 2181 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGklIrsL~gh~--vssLSfS-----------pDG-------------------------~IlVwdssd 2181 (2342)
.|++|++|+...|.+.+.+++|. ++.++.+ +.| ..++.++.+
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 99999999999999999999875 4555544 323 348888889
Q ss_pred CeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCC-----------CCcccccc
Q 000085 2182 HTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ-----------SGTEDFDL 2249 (2342)
Q Consensus 2182 GsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~-----------~~~iaFsp 2249 (2342)
.++.+|+... +.......+|..-|+.+.||||++++++++.|.+ .++|+...++ .+.++++.
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS------VkLW~g~tGk~lasfRGHv~~VYqvawsa 419 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS------VKLWDGRTGKFLASFRGHVAAVYQVAWSA 419 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc------eeeeeCCCcchhhhhhhccceeEEEEecc
Confidence 9999998753 2122233459999999999999999999998888 5666655543 22334444
Q ss_pred ccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2250 ASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2250 d~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
+...... .+.|.++++||+++.+....++ ||...|.++.|+|||..+++|+.|..+++|.
T Consensus 420 DsRLlVS----~SkDsTLKvw~V~tkKl~~DLp-Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 420 DSRLLVS----GSKDSTLKVWDVRTKKLKQDLP-GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CccEEEE----cCCCceEEEEEeeeeeecccCC-CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 4322222 2359999999999999999998 9999999999999999999999999999996
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.7e-31 Score=315.58 Aligned_cols=277 Identities=17% Similarity=0.200 Sum_probs=250.9
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCcc
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
+.+.+..+.|+.|++.|++|+|+|.++||+..+...+++|.||++.|.++.|+|. +..++||+.||+|++|++.+...
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~ 253 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP 253 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence 3345666899999999999999999999999999999999999999999999997 67899999999999999998644
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccc-ccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR-RRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSI 2149 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDL 2149 (2342)
+.. ..+|...|..++|+|+|+++++++.|.+++ |++ ...+....||...|.+++|.+||.+++|||.|..-+|||+
T Consensus 254 l~~-l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 254 LQD-LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred hhh-hhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence 433 456778899999999999999999998754 766 4456677899999999999999999999999999999999
Q ss_pred CCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCCC
Q 000085 2150 RRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISL-DGHSALIGVNSSST 2226 (2342)
Q Consensus 2150 rTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP-DGk~LaSGS~DGs~ 2226 (2342)
++|.++..+.+|. +..++|+|+|..++.++.|+++++|++.+.........|.+-|+.|.|+| .|.+|+|++.
T Consensus 333 Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy---- 408 (459)
T KOG0272|consen 333 RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY---- 408 (459)
T ss_pred ccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc----
Confidence 9999999999984 88999999999999999999999999987766655566999999999998 7888998863
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs 2306 (2342)
|++++||...+..+++++. ||.+.|.++++++|+.++++++.
T Consensus 409 -------------------------------------D~t~kiWs~~~~~~~ksLa-GHe~kV~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 409 -------------------------------------DNTVKIWSTRTWSPLKSLA-GHEGKVISLDISPDSQAIATSSF 450 (459)
T ss_pred -------------------------------------CcceeeecCCCcccchhhc-CCccceEEEEeccCCceEEEecc
Confidence 6779999999999999999 99999999999999999999999
Q ss_pred CCcEEEEe
Q 000085 2307 DKQLIVFT 2314 (2342)
Q Consensus 2307 DGsIrVWD 2314 (2342)
|.++++|.
T Consensus 451 DRT~KLW~ 458 (459)
T KOG0272|consen 451 DRTIKLWR 458 (459)
T ss_pred Cceeeecc
Confidence 99999996
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=2.8e-28 Score=277.06 Aligned_cols=266 Identities=20% Similarity=0.252 Sum_probs=223.6
Q ss_pred CeEEecCCCceEEEecCCCCCCCccccc---ccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHF---PRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~---p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
..+.+++.|+++-+|+.... ++.+ .+.+.+|+. .+.-+++++||++.++|++|+++++||+.+|+..+.|
T Consensus 29 ~~l~sasrDk~ii~W~L~~d----d~~~G~~~r~~~GHsH---~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f 101 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSD----DIKYGVPVRRLTGHSH---FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF 101 (315)
T ss_pred ceEEEcccceEEEEEEeccC----ccccCceeeeeeccce---EecceEEccCCceEEeccccceEEEEEecCCcEEEEE
Confidence 45778999999999997652 4444 334455544 4455899999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceE
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIH 2114 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~ 2114 (2342)
.||+..|.+++|++|.+.++|||.|.||++|++.... ..
T Consensus 102 ~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-----------------------------------------k~ 140 (315)
T KOG0279|consen 102 VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-----------------------------------------KY 140 (315)
T ss_pred EecCCceEEEEecCCCceeecCCCcceeeeeeecccE-----------------------------------------EE
Confidence 9999999999999999999999999999999987631 11
Q ss_pred Ee--cCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2115 VL--RGHHREILCCCVSSD--LGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2115 ~L--~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
++ .+|.+.|+|++|+|+ ..+|+++|.|++|++||+++.+....+.+|. ++.+++||||.+++.+..+|.+.+|+
T Consensus 141 t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 141 TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEE
Confidence 12 224789999999998 7899999999999999999999999998886 68899999999999999999999999
Q ss_pred eCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2189 LNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2189 lnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
++. +.+. .+.|...|.+++|+|+.-.|+.+. +..|
T Consensus 221 L~~~k~ly--sl~a~~~v~sl~fspnrywL~~at------------------------------------------~~sI 256 (315)
T KOG0279|consen 221 LNEGKNLY--SLEAFDIVNSLCFSPNRYWLCAAT------------------------------------------ATSI 256 (315)
T ss_pred ccCCceeE--eccCCCeEeeEEecCCceeEeecc------------------------------------------CCce
Confidence 984 4333 345899999999999988887663 3459
Q ss_pred EEEECCCCeEEEEEecCC--------CCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2268 CFLDLHTLKVFHVLKLGE--------GQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2268 rIWDL~Tgk~L~tL~lgH--------s~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
+|||+.+..++..+.... .....+++|++||..|++|-.|+.|++|.+
T Consensus 257 kIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 257 KIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred EEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 999999998887776422 223678899999999999999999999985
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=3.9e-27 Score=268.83 Aligned_cols=268 Identities=16% Similarity=0.235 Sum_probs=233.6
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc------
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA------ 2028 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg------ 2028 (2342)
++.+++++++.|+.+-||+..+.++.....+ ....|-.++|+|.|+++|+|+-|+...||++.+.
T Consensus 65 ~Dsr~ivSaSqDGklIvWDs~TtnK~haipl---------~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~ 135 (343)
T KOG0286|consen 65 TDSRRIVSASQDGKLIVWDSFTTNKVHAIPL---------PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNV 135 (343)
T ss_pred CCcCeEEeeccCCeEEEEEcccccceeEEec---------CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccc
Confidence 3578899999999999999887555433322 2235667999999999999999999999999854
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
+..+.+.||++-+.|+.|-+ ...|+|+|.|.|+.+||+++++
T Consensus 136 ~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~------------------------------------- 177 (343)
T KOG0286|consen 136 RVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQ------------------------------------- 177 (343)
T ss_pred eeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccce-------------------------------------
Confidence 34567899999999999986 5689999999999999999963
Q ss_pred cCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEE
Q 000085 2109 IEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
.+..|.||.+.|.+++++| +++.++||+-|++.++||+|.+.++++|.+|+ +..++|.|+|.-++.+..+++.+
T Consensus 178 ---~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcR 254 (343)
T KOG0286|consen 178 ---QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCR 254 (343)
T ss_pred ---EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeE
Confidence 3556789999999999999 89999999999999999999999999999986 79999999999999999999999
Q ss_pred EEEeCC-ceeeeecCC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCC
Q 000085 2186 SFTLNG-VLVARAKLP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2186 I~dlnG-~~L~s~~~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
+|++.. +.+...... ...+|++++||..|++|++|..
T Consensus 255 lyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~----------------------------------------- 293 (343)
T KOG0286|consen 255 LYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYD----------------------------------------- 293 (343)
T ss_pred EEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeec-----------------------------------------
Confidence 999974 344433222 4678999999999999998842
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
|..+.|||.-.++.+..+. +|...|+|+..+|||.-|++|+.|..++||.
T Consensus 294 d~~c~vWDtlk~e~vg~L~-GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 294 DFTCNVWDTLKGERVGVLA-GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCceeEeeccccceEEEee-ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 6779999999999999999 9999999999999999999999999999994
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=6.4e-27 Score=281.92 Aligned_cols=311 Identities=18% Similarity=0.192 Sum_probs=242.9
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc---
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS--- 2035 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~--- 2035 (2342)
+++++++|+++.+|.++. +.|..+..-| .+-|.|+.|+|||.++++.+.||.|.+||-.+|+.+..+.
T Consensus 162 Ri~T~sdDn~v~ffeGPP------FKFk~s~r~H---skFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~ 232 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFEGPP------FKFKSSFREH---SKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSD 232 (603)
T ss_pred EEEeccCCCeEEEeeCCC------eeeeeccccc---ccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCC
Confidence 689999999999999886 4444433333 3467789999999999999999999999999999999887
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccc-c--ccCCc
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR-R--RIEGP 2112 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~--~i~~~ 2112 (2342)
+|++.|.+++|+||+..++|+|.|.+++|||+.+..+..+........-..+..-.....+++.+.++... . .-..+
T Consensus 233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~ 312 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSV 312 (603)
T ss_pred CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCCh
Confidence 89999999999999999999999999999999998877776333321111121112234444444443322 1 12347
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE-------------------------------EEEec-
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLI-------------------------------RRLVG- 2160 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklI-------------------------------rsL~g- 2160 (2342)
...+.||...|+++..++++.+++||+.||.|.-||..+|..- +.+..
T Consensus 313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLK 392 (603)
T ss_pred hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecc
Confidence 8899999999999999999999999999999999998765311 11100
Q ss_pred ------C---------------------------------------------CcEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2161 ------V---------------------------------------------DAHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2161 ------h---------------------------------------------~vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
+ ...+++++|++..++.+..++.+++|.+
T Consensus 393 ~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl 472 (603)
T KOG0318|consen 393 DNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSL 472 (603)
T ss_pred cCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEe
Confidence 0 0135677889999999999999999999
Q ss_pred CCceeee--ecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2190 NGVLVAR--AKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2190 nG~~L~s--~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
+|..+.. ....|.++|++++|||||.||++|.. .+.+
T Consensus 473 ~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-----------------------------------------~rkv 511 (603)
T KOG0318|consen 473 SGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-----------------------------------------SRKV 511 (603)
T ss_pred cCCcccceeeeecccCCceEEEECCCCcEEEEecc-----------------------------------------CCcE
Confidence 9855332 23349999999999999999998841 4679
Q ss_pred EEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2268 CFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2268 rIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
.+||+.+.+.....-.-|.+.|.|++|+|+..++++|+-|-.|.||++....
T Consensus 512 v~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 512 VLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred EEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh
Confidence 9999999887444443599999999999999999999999999999976543
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-27 Score=277.62 Aligned_cols=298 Identities=19% Similarity=0.234 Sum_probs=238.6
Q ss_pred cccccCCcEEEEecCCccceeee-------cccCCCCCCCC------CC----ceeecCCCeEEecCCCceEEEecCCCC
Q 000085 1915 AIHASSDTVVIVDMNAPAAHIAR-------HNWQPNTPDGQ------GT----PFLFQHGKASASPASGTFLRMFKGPGG 1977 (2342)
Q Consensus 1915 ~I~~SsDsVV~Vd~N~~~~~la~-------~kW~p~t~dg~------~s----~flf~~Gk~LaSsSsD~tIRVwdg~tg 1977 (2342)
.|.++..+|+++.....+.++++ .-|++.+.-.. .. .-.-|+|+.|++++-|+.|++|++.+|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 35667778888877766656554 35776542211 10 112479999999999999999998774
Q ss_pred CCCcccccccceeccccCcceeEEEEEcC-----CCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCE
Q 000085 1978 SGADEWHFPRALAFASSGIRSSAVVSITH-----DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNF 2052 (2342)
Q Consensus 1978 s~~~ew~~p~sls~hs~gI~Svt~VafSp-----DGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~ 2052 (2342)
.. ..+.+..|...| ++++|.| ..++||+++.||+|+|||+..++++..+.||+.+|+|+.|--+ .+
T Consensus 190 ~~-----~g~~l~gH~K~I---t~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gl 260 (480)
T KOG0271|consen 190 QQ-----IGRALRGHKKWI---TALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GL 260 (480)
T ss_pred Cc-----ccccccCcccce---eEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ce
Confidence 32 345566666555 4488854 5679999999999999999999999999999999999999754 49
Q ss_pred EEEEeCCCceEEEeccCCccccccccCCCCCCcccccc-----------CCCC-------------------------Cc
Q 000085 2053 LVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNS-----------IGSS-------------------------TP 2096 (2342)
Q Consensus 2053 LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~S-----------pDG~-------------------------~L 2096 (2342)
|+|||.|+||++|+...|.+.+.+ .+|...|..++.+ +.+. .+
T Consensus 261 iySgS~DrtIkvw~a~dG~~~r~l-kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALDGKLCREL-KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred EEecCCCceEEEEEccchhHHHhh-cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 999999999999999998766554 3344444444333 3333 36
Q ss_pred eeecCCCc-ccccc---CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEec
Q 000085 2097 ANASADKS-RRRRI---EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSS 2170 (2342)
Q Consensus 2097 as~s~D~s-~~~~i---~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSp 2170 (2342)
++++.|.. ..|+. .+++....||..-|+.+.||||+++|+|+|-|..|++||-++|+.+.+|++|- ++.++||.
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa 419 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA 419 (480)
T ss_pred EEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc
Confidence 77777755 34554 45777889999999999999999999999999999999999999999999984 89999999
Q ss_pred CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2171 EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2171 DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
|.++++.++.|.++++|++..+.+..-..+|.+.|.++.|+|||+.+++|+.
T Consensus 420 DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggk 471 (480)
T KOG0271|consen 420 DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGK 471 (480)
T ss_pred CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCC
Confidence 9999999999999999999998888777779999999999999999998863
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=8.9e-28 Score=284.24 Aligned_cols=262 Identities=18% Similarity=0.185 Sum_probs=229.8
Q ss_pred eeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC--CCEEEEEEcCCcEEEEecCCcc
Q 000085 1952 FLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD--KEIITGGHVDGSIKLLTSDGAK 2029 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD--GklLASGS~DGsIrVWDl~tgk 2029 (2342)
++..+++.++|++-++++++|+.++. .....+.+|... +.++.|+|. +.-+|+|+.||++++|++++..
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~------~~~~~l~gH~~~---v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQC------NLLQTLRGHTSR---VGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCc------ceeEEEeccccc---eeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 44568899999999999999997762 222344445444 556999998 5589999999999999999999
Q ss_pred cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccc
Q 000085 2030 TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRR 2108 (2342)
Q Consensus 2030 ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~ 2108 (2342)
.++.+.||...|..++|+|+|++|+|+|.|.+-++||+++...... ..+|..++..++|.+||..+++++.|.. +.|+
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~-QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL-QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh-hcccccccceeEecCCCceeeccCccchhheee
Confidence 9999999999999999999999999999999999999999654332 4789999999999999999999998875 4465
Q ss_pred c--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEec-CCcEEEEEeCCCe
Q 000085 2109 I--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSS-EGVIMTWNKLQHT 2183 (2342)
Q Consensus 2109 i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSp-DG~IlVwdssdGs 2183 (2342)
+ +.++..|.||..+|.+|+|+|+|..++|||.|++++|||++..+.+.++.+|. ++.|.++| .|.+++....|++
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t 411 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT 411 (459)
T ss_pred cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc
Confidence 5 67889999999999999999999999999999999999999999999999986 78899998 7889999999999
Q ss_pred EEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2184 LSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2184 I~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
+++|...+........+|.+.|.++++++||+++++++.|
T Consensus 412 ~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 412 VKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD 451 (459)
T ss_pred eeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccC
Confidence 9999988766666677899999999999999999999743
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=1.1e-26 Score=260.26 Aligned_cols=271 Identities=15% Similarity=0.198 Sum_probs=226.0
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc--ccee
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK--TLET 2033 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk--ll~t 2033 (2342)
+.-.+++++.|-+||+|...+|......+. ..+ .|+.+.++||++.||+++ .-.||+||+.++. ++.+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh------~ds---qVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t 78 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQH------PDS---QVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVAT 78 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEec------Ccc---ceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeE
Confidence 345689999999999999888644333222 222 356699999999999987 4579999999875 5889
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
+.+|+..|+.+.|..||+.++|||.||+++|||++...+
T Consensus 79 ~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~----------------------------------------- 117 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC----------------------------------------- 117 (311)
T ss_pred EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc-----------------------------------------
Confidence 999999999999999999999999999999999987322
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CcEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV---DAHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh---~vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
+....|..+|+++..+|+...+++|..+|.|++||+.+..+.+.+... .+..+++.+||..++.....|..++|++-
T Consensus 118 qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 118 QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 123457799999999999999999999999999999998888777553 37889999999999999999999999986
Q ss_pred Cceeee------ecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCC
Q 000085 2191 GVLVAR------AKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPS 2264 (2342)
Q Consensus 2191 G~~L~s------~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~D 2264 (2342)
+....+ ....|.+.|..+.+|||+++|+++|. |
T Consensus 198 ~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss-----------------------------------------d 236 (311)
T KOG0315|consen 198 NHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS-----------------------------------------D 236 (311)
T ss_pred CCCccccceEhhheecccceEEEEEECCCCcEEEeecC-----------------------------------------C
Confidence 432221 12239999999999999999998862 7
Q ss_pred CeEEEEECCCC-eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2265 PSICFLDLHTL-KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2265 GsIrIWDL~Tg-k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
.+++||+..+. +.-..+. +|...+...+||.||+||++|+.|+.+++|+....+
T Consensus 237 ktv~iwn~~~~~kle~~l~-gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 237 KTVKIWNTDDFFKLELVLT-GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred ceEEEEecCCceeeEEEee-cCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 78999999987 5555666 899999999999999999999999999999976553
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=2.8e-26 Score=274.08 Aligned_cols=311 Identities=16% Similarity=0.218 Sum_probs=242.2
Q ss_pred eEEecCCCceEEEecCCCCCCC--cccccccce--eccc-cCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1959 ASASPASGTFLRMFKGPGGSGA--DEWHFPRAL--AFAS-SGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~--~ew~~p~sl--s~hs-~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
.+++++.+.+.|+|+....... ....+...+ ..+. ..-+.+++++|+.+|.+||+|+.||.+++|+.. |.++.+
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~t 271 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLIST 271 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhh
Confidence 4677888889999986531111 111111111 1111 112567889999999999999999999999975 678889
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccc--ccC
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRR--RIE 2110 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~--~i~ 2110 (2342)
+..|+++|.++.|+.+|+||++++.|+++.+||..++.....+ ..+......+.|- +...+++.+.++. ..+ ...
T Consensus 272 l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 272 LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGED 349 (524)
T ss_pred hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee-eeccCCccceEEe-cCceEeecCCCceEEEEEecCC
Confidence 9999999999999999999999999999999999887654443 2222221222222 2223344444432 222 335
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCC---------cEEEEEe
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEG---------VIMTWNK 2179 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG---------~IlVwds 2179 (2342)
.|+.++.||.++|.++.|+|.+.+|+|+|.|+|++||....+.+...+..|. ++.+.|+|+| ..++|..
T Consensus 350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas 429 (524)
T KOG0273|consen 350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS 429 (524)
T ss_pred CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee
Confidence 7899999999999999999999999999999999999999999998888876 7778888865 4788999
Q ss_pred CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCC
Q 000085 2180 LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2180 sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ 2259 (2342)
.++.+++|++...........|..+|++++|+|+|+|+++|+.
T Consensus 430 ~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~------------------------------------- 472 (524)
T KOG0273|consen 430 FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL------------------------------------- 472 (524)
T ss_pred cCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC-------------------------------------
Confidence 9999999999743444445569999999999999999999963
Q ss_pred ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2260 FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2260 ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
||.|.+|+.++++.++.+. .++.|..++|+.+|..|..+-.||.++|.|+
T Consensus 473 ----dg~V~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 473 ----DGCVHIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ----CCeeEeccccchheeEeec--CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 6789999999999999887 4567999999999999999999999999984
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=4.3e-25 Score=273.93 Aligned_cols=341 Identities=18% Similarity=0.228 Sum_probs=258.8
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccc--
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKT-- 2030 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkl-- 2030 (2342)
.-|+|+.++. +.++.+.||..+..... ++..=.......++...+.++.|+.|.++|++|+.|-+++||+++..+-
T Consensus 104 fSPng~~fav-~~gn~lqiw~~P~~~~~-~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~ 181 (893)
T KOG0291|consen 104 FSPNGKFFAV-GCGNLLQIWHAPGEIKN-EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF 181 (893)
T ss_pred ECCCCcEEEE-EecceeEEEecCcchhc-ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc
Confidence 3355666555 45679999998763221 2211111222345566778899999999999999999999999987665
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC------------------------Cccccc---------cc
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR------------------------AFTSRT---------GT 2077 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t------------------------g~~i~t---------~~ 2077 (2342)
...+.||++.|..+-|..+...++|.|.||.+.+|.... .+..++ ..
T Consensus 182 ~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 182 TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 567889999999999999999999999999999998871 010000 01
Q ss_pred cCCCCCCccccccCC------------------------------------------CCCceeecCC----CccccccCC
Q 000085 2078 IEPSSGMGTPGNSIG------------------------------------------SSTPANASAD----KSRRRRIEG 2111 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpD------------------------------------------G~~Las~s~D----~s~~~~i~~ 2111 (2342)
......+.+.++++. |..++.++.. .++.|..+.
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence 112233444444443 3333333322 112344455
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
-+...+||...++|++++|||++++||+.||.|+|||..+|-|+.+|..|. ++.++|+..|+.++..+-||+++.|++
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 567778999999999999999999999999999999999999999999875 789999999999999999999999999
Q ss_pred C-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEE
Q 000085 2190 N-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSIC 2268 (2342)
Q Consensus 2190 n-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIr 2268 (2342)
. .+..++...+...+..|++..|.|..+.+|+.| .-.|.
T Consensus 422 kRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d----------------------------------------~F~If 461 (893)
T KOG0291|consen 422 KRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQD----------------------------------------SFEIF 461 (893)
T ss_pred cccceeeeecCCCceeeeEEEEcCCCCEEEeeccc----------------------------------------eEEEE
Confidence 6 555666666677788999999999999988632 22599
Q ss_pred EEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC-----hhhhhhhhhccccCCCc
Q 000085 2269 FLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS-----LKVVDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2269 IWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs-----~k~LdQLLk~GWegDGL 2336 (2342)
||++.||+.+..+. ||.++|.+++|+|++..|++|+.|.+|++|++=.-+ .......+...+.|||-
T Consensus 462 vWS~qTGqllDiLs-GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 462 VWSVQTGQLLDILS-GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGK 533 (893)
T ss_pred EEEeecCeeeehhc-CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCC
Confidence 99999999999999 999999999999999999999999999999952221 12223445666777763
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=1.6e-26 Score=290.78 Aligned_cols=239 Identities=20% Similarity=0.276 Sum_probs=215.8
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc-------------------------------cceecccCCCCeEEEE
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK-------------------------------TLETASGHCAPVTCLA 2045 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk-------------------------------ll~tL~GHt~~VtcLA 2045 (2342)
..++|..|++|+.+||+|..|..|++|.+...+ ...++.||.++|..+.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 346789999999999999999999999886311 1235789999999999
Q ss_pred ecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEE
Q 000085 2046 LSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILC 2125 (2342)
Q Consensus 2046 fSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~ 2125 (2342)
|+|+.++|+|||.|++||+|.+.+. ..+..+.||..+|++
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~----------------------------------------s~~V~y~GH~~PVwd 498 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTW----------------------------------------SCLVIYKGHLAPVWD 498 (707)
T ss_pred ecccccceeeccCCcceeeeecccc----------------------------------------eeEEEecCCCcceee
Confidence 9999999999999999999999884 234567899999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCC
Q 000085 2126 CCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSG 2203 (2342)
Q Consensus 2126 VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~ 2203 (2342)
+.|+|-|-++||||.|++.++|.......++.+.+| .+.++.|+|+..+++.++.+.++++|++......+.+.+|.+
T Consensus 499 V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~ 578 (707)
T KOG0263|consen 499 VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG 578 (707)
T ss_pred EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC
Confidence 999999999999999999999999999999999987 488999999999999999999999999975555666678999
Q ss_pred CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec
Q 000085 2204 SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL 2283 (2342)
Q Consensus 2204 ~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l 2283 (2342)
+|++++|||+|++|++|+. ||.|.+||+.++..+..+.
T Consensus 579 ~V~al~~Sp~Gr~LaSg~e-----------------------------------------d~~I~iWDl~~~~~v~~l~- 616 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDE-----------------------------------------DGLIKIWDLANGSLVKQLK- 616 (707)
T ss_pred ceEEEEEcCCCceEeeccc-----------------------------------------CCcEEEEEcCCCcchhhhh-
Confidence 9999999999999999863 6789999999999999999
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2284 GEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2284 gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
+|.+.|.++.||.||..|++||.|.+|++||+..
T Consensus 617 ~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999999543
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=1.8e-26 Score=271.90 Aligned_cols=288 Identities=17% Similarity=0.221 Sum_probs=239.2
Q ss_pred EecCCccceeeecccCCCCCCCCCCceeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEc
Q 000085 1926 VDMNAPAAHIARHNWQPNTPDGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSIT 2005 (2342)
Q Consensus 1926 Vd~N~~~~~la~~kW~p~t~dg~~s~flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafS 2005 (2342)
...|+..+.++...|. +.|++|+++++.+-+.+|++.+ +.|...+.-|...++ ++.|+
T Consensus 90 ~s~NKvkc~V~~v~Wt-------------PeGRRLltgs~SGEFtLWNg~~------fnFEtilQaHDs~Vr---~m~ws 147 (464)
T KOG0284|consen 90 TSSNKVKCPVNVVRWT-------------PEGRRLLTGSQSGEFTLWNGTS------FNFETILQAHDSPVR---TMKWS 147 (464)
T ss_pred ccccccccceeeEEEc-------------CCCceeEeecccccEEEecCce------eeHHHHhhhhcccce---eEEEc
Confidence 3445555666666665 4578899999999999999754 455555555665554 59999
Q ss_pred CCCCEEEEEEcCCcEEEEecCCcccceecccCC-CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCC
Q 000085 2006 HDKEIITGGHVDGSIKLLTSDGAKTLETASGHC-APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGM 2084 (2342)
Q Consensus 2006 pDGklLASGS~DGsIrVWDl~tgkll~tL~GHt-~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V 2084 (2342)
++|.++++|..+|.|++|+..- ..++.+++|. ..|+|++|+|++..++|||.||+|+|||....
T Consensus 148 ~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-------------- 212 (464)
T KOG0284|consen 148 HNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-------------- 212 (464)
T ss_pred cCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC--------------
Confidence 9999999999999999999764 3455556555 99999999999999999999999999998764
Q ss_pred ccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--
Q 000085 2085 GTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-- 2162 (2342)
Q Consensus 2085 ~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-- 2162 (2342)
++...+.||.-.|.|++|+|...+|++||.|..|++||.++|.++.++.+|.
T Consensus 213 --------------------------kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKnt 266 (464)
T KOG0284|consen 213 --------------------------KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNT 266 (464)
T ss_pred --------------------------chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccce
Confidence 2334568999999999999999999999999999999999999999999886
Q ss_pred cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCC
Q 000085 2163 AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS 2242 (2342)
Q Consensus 2163 vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~ 2242 (2342)
+..+.|+++|.+++..++|..+++|++....-.....+|...|+++.|+|-..-|++.+ |
T Consensus 267 Vl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg--g------------------ 326 (464)
T KOG0284|consen 267 VLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG--G------------------ 326 (464)
T ss_pred EEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec--c------------------
Confidence 67788999999999999999999999973222222345999999999999765555432 1
Q ss_pred CccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2243 GTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2243 ~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
.||.|..|.+...+++..+..+|...|++++|+|-|..|++|+.|.++++|...
T Consensus 327 --------------------~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 327 --------------------SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred --------------------CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 278899999998888888888999999999999999999999999999999843
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=2.2e-24 Score=247.00 Aligned_cols=275 Identities=24% Similarity=0.329 Sum_probs=235.3
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
..+.+++|+|++++|++|+.||.|++|++.+++....+.+|...|.++.|+++++++++++.|+.|++|++.++......
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL 89 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence 34667999999999999999999999999998888889999999999999999999999999999999999986443333
Q ss_pred ccCCCCCCccccccCCCCCceeecCCC-cccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADK-SRRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
..+...+.++.+++++..++++..++ ...|+. .+....+..|...|++++|+|++.++++++.||.|++||+++++
T Consensus 90 -~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 168 (289)
T cd00200 90 -TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168 (289)
T ss_pred -eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc
Confidence 34556788899999988887777444 455665 35567777899999999999999999998889999999999999
Q ss_pred EEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc
Q 000085 2154 LIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2154 lIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~ 2231 (2342)
.+..+..+. +..+++++++..++.+..++.+.+|++...........|...|.++.|++++.++++++.
T Consensus 169 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------- 239 (289)
T cd00200 169 CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE--------- 239 (289)
T ss_pred cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcC---------
Confidence 888888765 788999999988888888999999999754333333358889999999999888887741
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLI 2311 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIr 2311 (2342)
|+.|++||+.+++.+..+. .|...|.+++|++++.+|++++.||.|+
T Consensus 240 --------------------------------~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 240 --------------------------------DGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred --------------------------------CCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence 6789999999999988888 8989999999999999999999999999
Q ss_pred EEe
Q 000085 2312 VFT 2314 (2342)
Q Consensus 2312 VWD 2314 (2342)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=278.01 Aligned_cols=275 Identities=23% Similarity=0.332 Sum_probs=231.8
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEec-CCcccc
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTS-DGAKTL 2031 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl-~tgkll 2031 (2342)
..++|..+++++.++++++|...+... .....+..| ...+..++|+||++++++|+.|++|+|||+ ..+..+
T Consensus 167 fs~~g~~l~~~~~~~~i~~~~~~~~~~----~~~~~l~~h---~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~ 239 (456)
T KOG0266|consen 167 FSPDGRALAAASSDGLIRIWKLEGIKS----NLLRELSGH---TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL 239 (456)
T ss_pred EcCCCCeEEEccCCCcEEEeecccccc----hhhcccccc---ccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEE
Confidence 346788899999999999998744221 122333333 444566999999999999999999999999 666899
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCC
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG 2111 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~ 2111 (2342)
+++.||...|+|++|+|+|+.+++|+.|++|+|||+.++ +
T Consensus 240 ~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~----------------------------------------~ 279 (456)
T KOG0266|consen 240 KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG----------------------------------------E 279 (456)
T ss_pred EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC----------------------------------------e
Confidence 999999999999999999999999999999999999985 3
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe--EEEEEecCC----cEEEEEecCCcEEEEEeCCCeEE
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR--LIRRLVGVD----AHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk--lIrsL~gh~----vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
+...+.+|.+.|++++|++++.++++++.||.|++||+.++. ++..+.++. ++.++|+|+|.+++....++.+.
T Consensus 280 ~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 280 CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 456789999999999999999999999999999999999999 567766542 58899999999999999999999
Q ss_pred EEEeCCceeeeecCCCCCC---eEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccC
Q 000085 2186 SFTLNGVLVARAKLPLSGS---IGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDF 2262 (2342)
Q Consensus 2186 I~dlnG~~L~s~~~~Hs~~---ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias 2262 (2342)
+|++..........+|... +.+...+++|.++++|+.
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~---------------------------------------- 399 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE---------------------------------------- 399 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeC----------------------------------------
Confidence 9999854444444455553 444556788999998863
Q ss_pred CCCeEEEEECCCCeEEEEEecCC-CCCeEEEEEecCCCEEEEEe--CCCcEEEEeCC
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGE-GQDITALALNKDNTNLLVST--ADKQLIVFTDP 2316 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgH-s~~ItsLafSPDG~~LaSGS--sDGsIrVWDi~ 2316 (2342)
|+.|++||..++..+..+. +| ...+..+.+++...++++++ .|+.+++|..+
T Consensus 400 -d~~v~~~~~~s~~~~~~l~-~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 400 -DGSVYVWDSSSGGILQRLE-GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred -CceEEEEeCCccchhhhhc-CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 6779999999999999988 89 88999999999999999998 79999999843
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=253.53 Aligned_cols=312 Identities=16% Similarity=0.138 Sum_probs=242.0
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
+..++.+++.+|+.+++++|+.|..-.||++.+|.....+.+|++.|+|+.|+.||.+|+||..+|.|+||+..++....
T Consensus 63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~ 142 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW 142 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999976554
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCc-cccccC--CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE--GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~--~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
.+. .....+..+.|+|.+..++.+..|+. +.|.+. ...+.+.||..+++|-.|.|+|+.++++..||+|++||+.+
T Consensus 143 ~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 143 KLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT 221 (399)
T ss_pred Eee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC
Confidence 442 45567888999999999999998875 567664 46788999999999999999999999999999999999999
Q ss_pred CeEEEEEecCC---c----------EEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEcc---CCC
Q 000085 2152 GRLIRRLVGVD---A----------HAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISL---DGH 2215 (2342)
Q Consensus 2152 GklIrsL~gh~---v----------ssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP---DGk 2215 (2342)
|+.+..+...+ . ..+..+.+|...+.+...|++..-..+.. ......+...+.|+.+.| .=.
T Consensus 222 g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~--~~l~~~~e~~~esve~~~~ss~lp 299 (399)
T KOG0296|consen 222 GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTV--PELKPSQEELDESVESIPSSSKLP 299 (399)
T ss_pred CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCC--ccccccchhhhhhhhhcccccccc
Confidence 99998887321 2 34455555665555555555433222111 111122455555555544 556
Q ss_pred EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccc-----cCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeE
Q 000085 2216 SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQS-----VDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDIT 2290 (2342)
Q Consensus 2216 ~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s-----~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~It 2290 (2342)
+.++|+.||. ..+|++......+++-+..++.. .....++..+|.|+.||.++|++++++. ||..+|.
T Consensus 300 L~A~G~vdG~------i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~-GH~~~Il 372 (399)
T KOG0296|consen 300 LAACGSVDGT------IAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYT-GHQMGIL 372 (399)
T ss_pred hhhcccccce------EEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEe-cCchhee
Confidence 7788888877 45566655444443333332211 1222334469999999999999999999 9999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2291 ALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2291 sLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+++++|++++++|+|.|++.+||+.+
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999965
No 22
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=7.8e-25 Score=275.71 Aligned_cols=289 Identities=18% Similarity=0.220 Sum_probs=221.8
Q ss_pred cCCCeEEecCCCceEEEecCCCCC--------CCcc-----------------cccccceeccccCcceeEEEEEcCCCC
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGS--------GADE-----------------WHFPRALAFASSGIRSSAVVSITHDKE 2009 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs--------~~~e-----------------w~~p~sls~hs~gI~Svt~VafSpDGk 2009 (2342)
.+++.+|.+-.|..|++|+..... .... -...+.+.+|.+++.. +.|+|+.+
T Consensus 388 ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg---~sFsPd~r 464 (707)
T KOG0263|consen 388 DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG---CSFSPDRR 464 (707)
T ss_pred CCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee---eeeccccc
Confidence 445667777788888888754200 0000 0111235566666555 89999999
Q ss_pred EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccc
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGN 2089 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~ 2089 (2342)
+|++++.|+++|+|.+.+..++-.+.||..+|+++.|+|-|-|++|||.|+|.++|.....
T Consensus 465 fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~------------------- 525 (707)
T KOG0263|consen 465 FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN------------------- 525 (707)
T ss_pred ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-------------------
Confidence 9999999999999999999999999999999999999999999999999999999998763
Q ss_pred cCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEE
Q 000085 2090 SIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVS 2167 (2342)
Q Consensus 2090 SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLS 2167 (2342)
.+...+.||-+.|.|+.|+|+..++++||.|.+|++||+.+|..++.|.||. +.+++
T Consensus 526 ---------------------~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~ 584 (707)
T KOG0263|consen 526 ---------------------KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALA 584 (707)
T ss_pred ---------------------CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEE
Confidence 4567789999999999999999999999999999999999999999999985 78999
Q ss_pred EecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccc
Q 000085 2168 LSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDF 2247 (2342)
Q Consensus 2168 fSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaF 2247 (2342)
+||+|++++.+..++.|.+|++.+..+.....+|.+.|+++.|+.||..|++|+.|++ .++|++.........
T Consensus 585 ~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns------V~lWD~~~~~~~~~~- 657 (707)
T KOG0263|consen 585 FSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS------VRLWDLTKVIELLNL- 657 (707)
T ss_pred EcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe------EEEEEchhhcccccc-
Confidence 9999999999999999999999876665566679999999999999999999998777 566766554322000
Q ss_pred ccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2248 DLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS 2304 (2342)
Q Consensus 2248 spd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG 2304 (2342)
...+.. ++.+.-=+-.+.-.+.++. ....+|.++.|...+-.|++|
T Consensus 658 ---~~~~~~-------~~~~~~~~~~~~~llgs~~-tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 658 ---GHISTS-------NSAITQENNASSLLLGSFY-TKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ---cccccc-------cccccccCCCCcceeeeee-ecCceEEEEEEeccceeEEec
Confidence 000000 0000000002233455555 556688889888766444444
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.93 E-value=2.4e-23 Score=251.41 Aligned_cols=316 Identities=16% Similarity=0.180 Sum_probs=240.7
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccc--
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKT-- 2030 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkl-- 2030 (2342)
.-|+|...++.++|+.+.+|++.++....+..- ...+-.++.+++|+||++.+++.+.|.+++|||+.+.++
T Consensus 198 ysPDG~~Fat~gsDgki~iyDGktge~vg~l~~------~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 198 YSPDGSRFATAGSDGKIYIYDGKTGEKVGELED------SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred ECCCCCeEEEecCCccEEEEcCCCccEEEEecC------CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence 347899999999999999999998765544321 223344566699999999999999999999999876532
Q ss_pred -----------------------------------------ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 2031 -----------------------------------------LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2031 -----------------------------------------l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
++++.||...|++++.++|+.+|+|||.||.|.-|+..+
T Consensus 272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC
Confidence 234589999999999999999999999999999999998
Q ss_pred CccccccccCCCCCCccccccCCCCCceeecCCCccccc---------------------------------cCCceEEe
Q 000085 2070 AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR---------------------------------IEGPIHVL 2116 (2342)
Q Consensus 2070 g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~---------------------------------i~~~l~~L 2116 (2342)
+..-+.....|...+..+..+..+..+.++..|..+... ....+..+
T Consensus 352 g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l 431 (603)
T KOG0318|consen 352 GTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLL 431 (603)
T ss_pred ccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEE
Confidence 765443334455555555555434333333332211110 01112333
Q ss_pred cCCC--------CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE--EecC--CcEEEEEecCCcEEEEEeCCCeE
Q 000085 2117 RGHH--------REILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR--LVGV--DAHAVSLSSEGVIMTWNKLQHTL 2184 (2342)
Q Consensus 2117 ~GHs--------~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs--L~gh--~vssLSfSpDG~IlVwdssdGsI 2184 (2342)
+.+. -...+++++|++..++.|+.||.|+||.+..+..... +..| .++.+++||||.+++.+...+.+
T Consensus 432 ~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 432 QDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred ecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence 3332 3467999999999999999999999999987654322 2223 48999999999999999999999
Q ss_pred EEEEeCCceeeeecCC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCC
Q 000085 2185 SSFTLNGVLVARAKLP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2185 ~I~dlnG~~L~s~~~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
.+|+............ |...|.|++|+|+..++++|+.
T Consensus 512 v~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl----------------------------------------- 550 (603)
T KOG0318|consen 512 VLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL----------------------------------------- 550 (603)
T ss_pred EEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc-----------------------------------------
Confidence 9999987666555555 9999999999999999999973
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
|-.|.||++......-.++..|...|+.+.|-.+ ..|++.|.|..|++|+++
T Consensus 551 Dt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 551 DTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWNVT 602 (603)
T ss_pred cceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcceeEEeccc
Confidence 5669999998765556666689989999999755 469999999999999964
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=6.6e-24 Score=263.50 Aligned_cols=300 Identities=15% Similarity=0.221 Sum_probs=239.7
Q ss_pred EEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcC-CcEEEEecCCcccceecccCC
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVD-GSIKLLTSDGAKTLETASGHC 2038 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~D-GsIrVWDl~tgkll~tL~GHt 2038 (2342)
++++-+.+.+.+|..+. +.....++... ..+..++|+..|..||.|+.. |.+-||++.+..-+...+||.
T Consensus 280 lvvgFssG~f~LyelP~------f~lih~LSis~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~ 350 (893)
T KOG0291|consen 280 LVVGFSSGEFGLYELPD------FNLIHSLSISD---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS 350 (893)
T ss_pred EEEEecCCeeEEEecCC------ceEEEEeeccc---ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc
Confidence 44444555667776554 22222333332 345569999999999988754 899999999988888889999
Q ss_pred CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC
Q 000085 2039 APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG 2118 (2342)
Q Consensus 2039 ~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G 2118 (2342)
..++|++++|||++++||+.||.|+|||...+. +..++..
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf----------------------------------------C~vTFte 390 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF----------------------------------------CFVTFTE 390 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCce----------------------------------------EEEEecc
Confidence 999999999999999999999999999998864 3456788
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---cEEEEEecCCcEEEEEeCCC-eEEEEEeCCcee
Q 000085 2119 HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD---AHAVSLSSEGVIMTWNKLQH-TLSSFTLNGVLV 2194 (2342)
Q Consensus 2119 Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~---vssLSfSpDG~IlVwdssdG-sI~I~dlnG~~L 2194 (2342)
|+..|+.++|+..|+.+++.|.||+|+.||+...+..+++..+. ..+++..|.|.+++.+..+. .|.+|++....+
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql 470 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL 470 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence 99999999999999999999999999999999999999998764 46778888899999887765 699999986667
Q ss_pred eeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCC-----------CCccccccccccccCCCCccCC
Q 000085 2195 ARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ-----------SGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2195 ~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~-----------~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
.....+|.++|.+++|+|+|..|++||+|.+ .++|++-... ...+.|.|++...... .-
T Consensus 471 lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT------VRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVa----Tl 540 (893)
T KOG0291|consen 471 LDILSGHEGPVSGLSFSPDGSLLASGSWDKT------VRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVA----TL 540 (893)
T ss_pred eehhcCCCCcceeeEEccccCeEEeccccce------EEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEE----Ee
Confidence 7677789999999999999999999998888 5566655431 2233566665443333 34
Q ss_pred CCeEEEEECCCCeEEEEEec-------------------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKL-------------------GEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~l-------------------gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
||.|.+||...+..+..+.. ..+...+.+++|+||..|++||..+.|++|++++.
T Consensus 541 dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 541 DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 99999999987666544431 12357899999999999999999999999997653
No 25
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=3.3e-25 Score=253.17 Aligned_cols=274 Identities=18% Similarity=0.185 Sum_probs=238.3
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce--------ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE--------TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~--------tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
+.|..|||||++|++|+.||.|.|||+.+|+..+ .+.-|.++|.|+.||.|...|+||+.||.|+||.+.+|
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG 295 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG 295 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc
Confidence 4568999999999999999999999999997654 34558899999999999999999999999999999999
Q ss_pred ccccccccCCCCCCccccccCCCCCceeecCCCccc---cccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2071 FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR---RRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2071 ~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~---~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIW 2147 (2342)
.|++.+...|..++.++.|+.|+..+.+++.|...+ ...++++..++||...|+...|.+||..+++++.||+|++|
T Consensus 296 ~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW 375 (508)
T KOG0275|consen 296 QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVW 375 (508)
T ss_pred hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEe
Confidence 999999889999999999999999999999887655 34577889999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCC----cEEEEEecCC-cEEEEEeCCCeEEEEEeCCceeeeecCC--CCCCeEEEEEccCCCEEEEE
Q 000085 2148 SIRRGRLIRRLVGVD----AHAVSLSSEG-VIMTWNKLQHTLSSFTLNGVLVARAKLP--LSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2148 DLrTGklIrsL~gh~----vssLSfSpDG-~IlVwdssdGsI~I~dlnG~~L~s~~~~--Hs~~ItsLafSPDGk~LaSG 2220 (2342)
+..+++|+.+++..+ +..+-.-|.+ .-++...+.+++++.++.|+.+.....+ ..+...+.++||.|.++.+.
T Consensus 376 ~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYci 455 (508)
T KOG0275|consen 376 HGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCI 455 (508)
T ss_pred cCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEE
Confidence 999999999997643 3444444433 3444555678899999999888776554 45677888899999999876
Q ss_pred eCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCE
Q 000085 2221 VNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTN 2300 (2342)
Q Consensus 2221 S~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~ 2300 (2342)
+ .|+.++.+.+.+|+.-.++. .|...|..++-+|..+.
T Consensus 456 g-----------------------------------------ED~vlYCF~~~sG~LE~tl~-VhEkdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 456 G-----------------------------------------EDGVLYCFSVLSGKLERTLP-VHEKDVIGLTHHPHQNL 493 (508)
T ss_pred c-----------------------------------------cCcEEEEEEeecCceeeeee-cccccccccccCcccch
Confidence 5 27889999999999999988 88999999999999999
Q ss_pred EEEEeCCCcEEEEe
Q 000085 2301 LLVSTADKQLIVFT 2314 (2342)
Q Consensus 2301 LaSGSsDGsIrVWD 2314 (2342)
|++-++||.+++|.
T Consensus 494 lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 494 LASYSEDGLLKLWK 507 (508)
T ss_pred hhhhcccchhhhcC
Confidence 99999999999996
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=253.15 Aligned_cols=277 Identities=15% Similarity=0.221 Sum_probs=243.8
Q ss_pred cceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1996 IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1996 I~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
-.+++.+-|+|+-.++++++.|++|++||..+|++...++||++.|..++|+..|++|+|+|.|-.+++||..+......
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k 187 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK 187 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH
Confidence 34556688999999999999999999999999999999999999999999999999999999999999999988533333
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccc-cc--cCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRR-RR--IEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~--i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
...++...+.++.+-|.|.++++++.|.... |+ .+-++.++.+|...|..++.+.||.++++|+.|.+|++|-+.++
T Consensus 188 s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~ 267 (406)
T KOG0295|consen 188 SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK 267 (406)
T ss_pred HhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc
Confidence 3567888899999999999999999887643 54 46689999999999999999999999999999999999999999
Q ss_pred eEEEEEecCC--cEEEEEec---------------CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCC
Q 000085 2153 RLIRRLVGVD--AHAVSLSS---------------EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGH 2215 (2342)
Q Consensus 2153 klIrsL~gh~--vssLSfSp---------------DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk 2215 (2342)
++...++.|+ +.+++|.| .|.++..+.+|++|++|+++.....-...+|...|..++|+|.|+
T Consensus 268 ~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gk 347 (406)
T KOG0295|consen 268 QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGK 347 (406)
T ss_pred hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCe
Confidence 8887777664 56666644 235888889999999999986555555667999999999999999
Q ss_pred EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe
Q 000085 2216 SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN 2295 (2342)
Q Consensus 2216 ~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS 2295 (2342)
||++.. .|++++|||+++++++.++. .|..-|++++|+
T Consensus 348 yi~Sca-----------------------------------------DDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh 385 (406)
T KOG0295|consen 348 YILSCA-----------------------------------------DDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFH 385 (406)
T ss_pred EEEEEe-----------------------------------------cCCcEEEEEeccceeeeccC-CCcceeEEEecC
Confidence 999775 27889999999999999999 999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEe
Q 000085 2296 KDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2296 PDG~~LaSGSsDGsIrVWD 2314 (2342)
.+..++++|+-|.++++|.
T Consensus 386 ~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCCceEEeccccceeeeee
Confidence 9999999999999999997
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=4.3e-25 Score=254.67 Aligned_cols=271 Identities=17% Similarity=0.251 Sum_probs=222.9
Q ss_pred CCceeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc
Q 000085 1949 GTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA 2028 (2342)
Q Consensus 1949 ~s~flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg 2028 (2342)
+...+..++..+++|..|++|++|+..+ ......+.+|.+ +|.|+ .-|.++|++|+.|.+|+|||+++|
T Consensus 199 gVYClQYDD~kiVSGlrDnTikiWD~n~------~~c~~~L~GHtG---SVLCL--qyd~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 199 GVYCLQYDDEKIVSGLRDNTIKIWDKNS------LECLKILTGHTG---SVLCL--QYDERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred ceEEEEecchhhhcccccCceEEecccc------HHHHHhhhcCCC---cEEee--eccceEEEecCCCceEEEEeccCC
Confidence 3455566788889999999999998654 223344555544 44444 456779999999999999999999
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
+++.++.+|.+.|..+.|+ ..+++|+|.|.++.|||+.....
T Consensus 268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~------------------------------------ 309 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD------------------------------------ 309 (499)
T ss_pred chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchH------------------------------------
Confidence 9999999999999999997 56999999999999999987321
Q ss_pred cCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2109 IEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
....+.+.||...|+.+.|+ .++++|+|.|.+|++|++.++++++++.+|.--..|.-..|++++.++.+.+|++|+
T Consensus 310 -it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwd 386 (499)
T KOG0281|consen 310 -ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD 386 (499)
T ss_pred -HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEe
Confidence 12345678999999999995 569999999999999999999999999999877788888999999999999999999
Q ss_pred eCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEE
Q 000085 2189 LNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSIC 2268 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIr 2268 (2342)
+..........+|..-|.|+.|. .+.+++|+. ||+|+
T Consensus 387 i~~G~cLRvLeGHEeLvRciRFd--~krIVSGaY-----------------------------------------DGkik 423 (499)
T KOG0281|consen 387 IECGACLRVLEGHEELVRCIRFD--NKRIVSGAY-----------------------------------------DGKIK 423 (499)
T ss_pred ccccHHHHHHhchHHhhhheeec--Cceeeeccc-----------------------------------------cceEE
Confidence 98555555566799999999995 678887752 78899
Q ss_pred EEECCCCe---------EEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2269 FLDLHTLK---------VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2269 IWDL~Tgk---------~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
|||+.++. ++.++. .|++.|..+.| |...+++++.|.+|.|||+.+
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv-~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLV-EHSGRVFRLQF--DEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred EEecccccCCcccccchHHHhhh-hccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence 99997653 233333 68889999998 667899999999999999643
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.6e-23 Score=238.68 Aligned_cols=234 Identities=19% Similarity=0.245 Sum_probs=202.8
Q ss_pred eEEEEEcCCC-CEEEEEEcCCcEEEEecC-----CcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc
Q 000085 1999 SAVVSITHDK-EIITGGHVDGSIKLLTSD-----GAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1999 vt~VafSpDG-klLASGS~DGsIrVWDl~-----tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
|..++..+.+ .++++++.|.++.+|++. .|..++.+.||...|..+..++||++.+|+|.|+++++||+.++
T Consensus 18 Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g-- 95 (315)
T KOG0279|consen 18 VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG-- 95 (315)
T ss_pred EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC--
Confidence 4457777764 489999999999999875 46778999999999999999999999999999999999999986
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
++.+.|.||...|.+++|++|.+.++|||.|.+|++||+..+
T Consensus 96 --------------------------------------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ 137 (315)
T KOG0279|consen 96 --------------------------------------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV 137 (315)
T ss_pred --------------------------------------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence 245678999999999999999999999999999999998654
Q ss_pred eEEEEEecC--C--cEEEEEecC--CcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2153 RLIRRLVGV--D--AHAVSLSSE--GVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2153 klIrsL~gh--~--vssLSfSpD--G~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
+..++..+ . +.+++|+|+ ..+++....|+.+++|++.+..+.....+|.+.++.+++||||...++|+.
T Consensus 138 -ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk---- 212 (315)
T KOG0279|consen 138 -CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK---- 212 (315)
T ss_pred -EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----
Confidence 44444333 2 789999998 678888899999999999998888888889999999999999999998763
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs 2306 (2342)
||.+.+||++.++.++.+. |...|.+++|+|+.-+|+.+.
T Consensus 213 -------------------------------------dg~~~LwdL~~~k~lysl~--a~~~v~sl~fspnrywL~~at- 252 (315)
T KOG0279|consen 213 -------------------------------------DGEAMLWDLNEGKNLYSLE--AFDIVNSLCFSPNRYWLCAAT- 252 (315)
T ss_pred -------------------------------------CceEEEEEccCCceeEecc--CCCeEeeEEecCCceeEeecc-
Confidence 7789999999999988876 889999999999987666554
Q ss_pred CCcEEEEeCCC
Q 000085 2307 DKQLIVFTDPA 2317 (2342)
Q Consensus 2307 DGsIrVWDi~s 2317 (2342)
+..|+|||...
T Consensus 253 ~~sIkIwdl~~ 263 (315)
T KOG0279|consen 253 ATSIKIWDLES 263 (315)
T ss_pred CCceEEEeccc
Confidence 45699999654
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.9e-23 Score=267.26 Aligned_cols=243 Identities=21% Similarity=0.338 Sum_probs=212.5
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc--cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK--TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk--ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
...++.|+.|+++|+.+++++.|+.+++|+..+++ ..+.+.+|...|.+++|+|+++++++|+.|++++|||+...
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-- 235 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-- 235 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC--
Confidence 35678889999999999999999999999998887 78888999999999999999999999999999999999432
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
...+.++.||...|++++|+|+++++++|+.|++|+|||++++
T Consensus 236 -------------------------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 236 -------------------------------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred -------------------------------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence 1346778999999999999999999999999999999999999
Q ss_pred eEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCcee--eeecCCCCC--CeEEEEEccCCCEEEEEeCCCCC
Q 000085 2153 RLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLV--ARAKLPLSG--SIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2153 klIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L--~s~~~~Hs~--~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
++++.+.+|. +..++|++||.+++.+..++.+++|++.+... ......+.. +++++.|+|+|.++++++.
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~---- 354 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL---- 354 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----
Confidence 9999999985 78999999999999998899999999986552 222233333 5999999999999998852
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCC---eEEEEEecCCCEEEE
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQD---ITALALNKDNTNLLV 2303 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~---ItsLafSPDG~~LaS 2303 (2342)
|+.+++||+..+.++..+. +|... +.+...++.+.++++
T Consensus 355 -------------------------------------d~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s 396 (456)
T KOG0266|consen 355 -------------------------------------DRTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPTLSTGGKLIYS 396 (456)
T ss_pred -------------------------------------CCeEEEEEccCCcceeeec-ccCCcceeEecccccCCCCeEEE
Confidence 6789999999999999888 66654 445566789999999
Q ss_pred EeCCCcEEEEeCCCC
Q 000085 2304 STADKQLIVFTDPAL 2318 (2342)
Q Consensus 2304 GSsDGsIrVWDi~sL 2318 (2342)
|+.|+.|.+|+..+.
T Consensus 397 g~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 397 GSEDGSVYVWDSSSG 411 (456)
T ss_pred EeCCceEEEEeCCcc
Confidence 999999999997764
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=1.2e-23 Score=261.90 Aligned_cols=347 Identities=16% Similarity=0.226 Sum_probs=255.7
Q ss_pred eeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc
Q 000085 1952 FLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL 2031 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll 2031 (2342)
-+-+++..+++++....+|+|..+++.....|.. .|.++ +-.++|+|.|.++++|+.||.++|||+..+.+.
T Consensus 69 ~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa-----~He~P---vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 69 ALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKA-----IHEAP---VITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred eecCCccEEEEeeccceEEEEEcccchHhHhHhh-----ccCCC---eEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 4567889999999999999999998765556632 23333 455999999999999999999999999999999
Q ss_pred eecccCCCCeEEEEecCCCC--EEEEEeCCCceEEEeccCCcc-ccccccCCCCCCccccccCCCCCceeecCC------
Q 000085 2032 ETASGHCAPVTCLALSSDSN--FLVTGSQDTTILLWRIHRAFT-SRTGTIEPSSGMGTPGNSIGSSTPANASAD------ 2102 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~--~LaSGS~DGTVrVWDl~tg~~-i~t~~~~~~~~V~svs~SpDG~~Las~s~D------ 2102 (2342)
..|.||.+.|..+.|+|+-+ .|++|..|++|++||+.+... .++ ...|.+.++++.+++|+..+.+.+.|
T Consensus 141 h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~-~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vw 219 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHT-MILHKSAVTSLAFSEDSLELLSVGRDKVIIVW 219 (775)
T ss_pred EEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHH-HHhhhhheeeeeeccCCceEEEeccCcEEEEe
Confidence 99999999999999999754 589999999999999985432 111 12233333333333333322222111
Q ss_pred --------------------------------------------------------------------------------
Q 000085 2103 -------------------------------------------------------------------------------- 2102 (2342)
Q Consensus 2103 -------------------------------------------------------------------------------- 2102 (2342)
T Consensus 220 d~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~v 299 (775)
T KOG0319|consen 220 DLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLV 299 (775)
T ss_pred ehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEE
Confidence
Q ss_pred -------------------------Cc----------------------ccccc-CCceEEecCCCCCeEEEEEecCCCE
Q 000085 2103 -------------------------KS----------------------RRRRI-EGPIHVLRGHHREILCCCVSSDLGV 2134 (2342)
Q Consensus 2103 -------------------------~s----------------------~~~~i-~~~l~~L~GHs~~Vt~VafSPDg~l 2134 (2342)
.+ +.++. ...-+.+.||+..|.+++...+|.+
T Consensus 300 taeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~l 379 (775)
T KOG0319|consen 300 TAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDL 379 (775)
T ss_pred EccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcE
Confidence 00 00000 0012355789999999997677889
Q ss_pred EEEEeCCCcEEEEECCCCe----EEEEEecCC--cEEEEEecCC-cEEEEEeCCCeEEEEEeCC-------ceee--eec
Q 000085 2135 VVSCSDSSDLLLHSIRRGR----LIRRLVGVD--AHAVSLSSEG-VIMTWNKLQHTLSSFTLNG-------VLVA--RAK 2198 (2342)
Q Consensus 2135 LaSGS~DGtIrIWDLrTGk----lIrsL~gh~--vssLSfSpDG-~IlVwdssdGsI~I~dlnG-------~~L~--s~~ 2198 (2342)
++|||.|.++++|-++++. ++....+|. +..++++..| .+++..+.|+++++|.+.. ..+. ...
T Consensus 380 lat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~ 459 (775)
T KOG0319|consen 380 LATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE 459 (775)
T ss_pred EEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence 9999999999999885443 344455554 6677777666 4667778889999999865 1111 112
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCC-----------CCccccccccccccCCCCccCCCCeE
Q 000085 2199 LPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ-----------SGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2199 ~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~-----------~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
..|+..|+|++++|+.+.++|||.|.. .++|++.... .+...|++....... ++.|.+|
T Consensus 460 ~aHdKdIN~Vaia~ndkLiAT~SqDkt------aKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT----~SgD~Tv 529 (775)
T KOG0319|consen 460 RAHDKDINCVAIAPNDKLIATGSQDKT------AKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLAT----CSGDKTV 529 (775)
T ss_pred HhhcccccceEecCCCceEEecccccc------eeeecccCceEEEEeeCCccceEEEEeccccceeEe----ccCCceE
Confidence 239999999999999999999998877 4455554321 233456665443333 3459999
Q ss_pred EEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2268 CFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2268 rIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
+||.+.+..|+.++. ||...|..+.|-.+|++|++++.||-|++|++.+.
T Consensus 530 KIW~is~fSClkT~e-GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 530 KIWSISTFSCLKTFE-GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred EEEEeccceeeeeec-CccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 999999999999999 99999999999999999999999999999997644
No 31
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7e-23 Score=232.63 Aligned_cols=270 Identities=17% Similarity=0.219 Sum_probs=214.7
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc--ccceec
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA--KTLETA 2034 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg--kll~tL 2034 (2342)
|..+++++.|+.+|+|+... ...|.....+ ..++.+++..++|+|.|++|++|+.|.++.||.-..+ +++.++
T Consensus 27 g~ilAscg~Dk~vriw~~~~---~~s~~ck~vl--d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l 101 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSS---GDSWTCKTVL--DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL 101 (312)
T ss_pred ceEEEeecCCceEEEEecCC---CCcEEEEEec--cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee
Confidence 44789999999999998543 2234433222 2355677777999999999999999999999986644 678899
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceE
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIH 2114 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~ 2114 (2342)
.||...|.|++|+++|++|+|||+|+.|-||.+..+.. ..+..
T Consensus 102 EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-------------------------------------fec~a 144 (312)
T KOG0645|consen 102 EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-------------------------------------FECIA 144 (312)
T ss_pred eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-------------------------------------EEEEe
Confidence 99999999999999999999999999999999875311 13466
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---CCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2115 VLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR---RGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2115 ~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr---TGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
.+++|+..|..+.|+|...+|+|+|.|.+|++|.-. .-.+++++.+|. +.+++|++.|.-++....++.+.+|..
T Consensus 145 VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 145 VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 789999999999999999999999999999999876 346899999985 778999999999999999999999985
Q ss_pred CCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEE
Q 000085 2190 NGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICF 2269 (2342)
Q Consensus 2190 nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrI 2269 (2342)
-.. ....|...++.+.|. ...|++|+. |+.|++
T Consensus 225 ~~~----~~~~~sr~~Y~v~W~--~~~IaS~gg-----------------------------------------D~~i~l 257 (312)
T KOG0645|consen 225 YTD----LSGMHSRALYDVPWD--NGVIASGGG-----------------------------------------DDAIRL 257 (312)
T ss_pred ccC----cchhcccceEeeeec--ccceEeccC-----------------------------------------CCEEEE
Confidence 311 111288999999998 445666653 444555
Q ss_pred EECCC------CeEEEEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeC
Q 000085 2270 LDLHT------LKVFHVLKLGEGQDITALALNKD-NTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2270 WDL~T------gk~L~tL~lgHs~~ItsLafSPD-G~~LaSGSsDGsIrVWDi 2315 (2342)
+.-.. .+.+......|...|+++.|.|. ..+|++|+.||.|++|.+
T Consensus 258 f~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 258 FKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred EEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 54322 22233334478899999999994 678999999999999984
No 32
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-23 Score=248.04 Aligned_cols=279 Identities=13% Similarity=0.133 Sum_probs=228.5
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc---ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGA---KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tg---kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
.-|..+.||++|++||+++.|.+..+|.+... +...++.||..+|.-+.||||.++|++|+.|..+.+||+.++...
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~ 304 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR 304 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh
Confidence 44667999999999999999999999987643 457889999999999999999999999999999999999999988
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCc-cccccCCc-eEEecCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEGP-IHVLRGH-HREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~~-l~~L~GH-s~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
+.....+...+.+++|.|||..+++++.|.. ..|+..+. .....+- ...|.++++++||+++++.+.|..|++++..
T Consensus 305 ~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e 384 (519)
T KOG0293|consen 305 HLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE 384 (519)
T ss_pred hhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechh
Confidence 8876667788999999999999999998865 33665433 2233332 3569999999999999999999999999998
Q ss_pred CCeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCC--eEEEEEcc-CCCEEEEEeCCCCC
Q 000085 2151 RGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGS--IGCMEISL-DGHSALIGVNSSST 2226 (2342)
Q Consensus 2151 TGklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~--ItsLafSP-DGk~LaSGS~DGs~ 2226 (2342)
+......+.. +.++.+++|.||++.+.+..+..+++|++....+.....+|... |..-+|-. +..++++||
T Consensus 385 ~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS----- 459 (519)
T KOG0293|consen 385 ARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS----- 459 (519)
T ss_pred hhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC-----
Confidence 7766644443 45899999999999999999999999999866666666665432 22223322 234444443
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC-CEEEEEe
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN-TNLLVST 2305 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG-~~LaSGS 2305 (2342)
.|+.|+||+..+++++.++. ||...|+||+|+|.. .++|++|
T Consensus 460 ------------------------------------ED~kvyIWhr~sgkll~~Ls-GHs~~vNcVswNP~~p~m~ASas 502 (519)
T KOG0293|consen 460 ------------------------------------EDSKVYIWHRISGKLLAVLS-GHSKTVNCVSWNPADPEMFASAS 502 (519)
T ss_pred ------------------------------------CCceEEEEEccCCceeEeec-CCcceeeEEecCCCCHHHhhccC
Confidence 48899999999999999999 999999999999955 6789999
Q ss_pred CCCcEEEEeCCC
Q 000085 2306 ADKQLIVFTDPA 2317 (2342)
Q Consensus 2306 sDGsIrVWDi~s 2317 (2342)
.||+|+||....
T Consensus 503 DDgtIRIWg~~~ 514 (519)
T KOG0293|consen 503 DDGTIRIWGPSD 514 (519)
T ss_pred CCCeEEEecCCc
Confidence 999999998543
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.91 E-value=2.8e-23 Score=241.40 Aligned_cols=302 Identities=19% Similarity=0.258 Sum_probs=243.1
Q ss_pred cccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCce
Q 000085 1983 WHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTI 2062 (2342)
Q Consensus 1983 w~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTV 2062 (2342)
|.+-+.+.+|. ..|.|+++.|.++++++|+.|++|+|||+.+|++..++.||...|..+++|+-..||++++.|+.|
T Consensus 141 wKl~rVi~gHl---gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 141 WKLYRVISGHL---GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred ceehhhhhhcc---ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 34444555544 456669999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2063 LLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
+.||+...+.++.+ .+|-.+|.++...|.-..+++++.|.+ +.|++ ...++.+.||..+|..|.+.|....++|||
T Consensus 218 KCwDLe~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred EEEechhhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 99999987666554 578889999999999999999988875 45766 457899999999999999999888999999
Q ss_pred CCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEE
Q 000085 2140 DSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSA 2217 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~L 2217 (2342)
.|++|++||++.|+...++..|. +.+++..|.-..++.++. ..+..|.+..........+|+.-|++++.+.||-++
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~ 375 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-DNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLV 375 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-ccceeccCCccchhhccccccceeeeeeeccCceEE
Confidence 99999999999999999998875 678888888776665544 457888886333333344599999999999887554
Q ss_pred EEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEe-------cCCCCCeE
Q 000085 2218 LIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLK-------LGEGQDIT 2290 (2342)
Q Consensus 2218 aSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~-------lgHs~~It 2290 (2342)
+|+. +|.|.+||.++|-..+... ......|.
T Consensus 376 -~G~d-----------------------------------------ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~ 413 (460)
T KOG0285|consen 376 -SGGD-----------------------------------------NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIF 413 (460)
T ss_pred -EcCC-----------------------------------------ceEEEEEecCcCcccccccccccCCcccccccee
Confidence 4542 5679999998876544431 01346799
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCChhhhhhhhhccccCC
Q 000085 2291 ALALNKDNTNLLVSTADKQLIVFTDPALSLKVVDQMLKLGWEGD 2334 (2342)
Q Consensus 2291 sLafSPDG~~LaSGSsDGsIrVWDi~sLs~k~LdQLLk~GWegD 2334 (2342)
+.+|...|..|++|..|.+|++|.-+..- ..+..-..|.++
T Consensus 414 as~fDktg~rlit~eadKtIk~~keDe~a---T~EthPl~w~P~ 454 (460)
T KOG0285|consen 414 ASCFDKTGSRLITGEADKTIKMYKEDEHA---TEETHPLNWKPE 454 (460)
T ss_pred EEeecccCceEEeccCCcceEEEeccccc---CcccCCcCCCCc
Confidence 99999999999999999999999854432 122222556665
No 34
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=4.8e-23 Score=236.56 Aligned_cols=265 Identities=15% Similarity=0.152 Sum_probs=218.6
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCC-cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDG-AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~t-gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
+.++.|+|+|.+||+|+.|..|.+|++.. -+-..+++||.++|..+.|.+|++.|+|+|.|.+|+.||.+++++
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~----- 124 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR----- 124 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccccee-----
Confidence 45599999999999999999999999643 355677889999999999999999999999999999999999743
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
...+++|.+-|+.++.+.-| .++.||+.||++++||+|+...++
T Consensus 125 -----------------------------------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~ 169 (338)
T KOG0265|consen 125 -----------------------------------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK 169 (338)
T ss_pred -----------------------------------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh
Confidence 34568899999998855444 467789999999999999999998
Q ss_pred EEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccc
Q 000085 2157 RLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQ 2235 (2342)
Q Consensus 2157 sL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw 2235 (2342)
++.. .+.++++|..++.-++.+.-++.|++|++..........+|.+.|+.+..+++|.++.+-+.|+. .++|
T Consensus 170 t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t------vrvw 243 (338)
T KOG0265|consen 170 TFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT------VRVW 243 (338)
T ss_pred ccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce------EEEE
Confidence 8854 46889999999999999999999999999654555555679999999999999999998888777 4455
Q ss_pred ccCCCCCC-------------------ccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2236 GLNSKQSG-------------------TEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2236 ~l~~~~~~-------------------~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
+....... .+.++|+.. .....+.|..+++||..+...++.++ ||.+.|++++|+|
T Consensus 244 d~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~----~i~ags~dr~vyvwd~~~r~~lyklp-Gh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 244 DVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT----KITAGSADRFVYVWDTTSRRILYKLP-GHYGSVNEVDFHP 318 (338)
T ss_pred EecccCCCCceEEEeecchhhhhhhcceeeccCCCC----ccccccccceEEEeecccccEEEEcC-CcceeEEEeeecC
Confidence 55432211 112222222 22233469999999999999999999 9999999999999
Q ss_pred CCCEEEEEeCCCcEEEEe
Q 000085 2297 DNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2297 DG~~LaSGSsDGsIrVWD 2314 (2342)
...+|.+++.|.+|++=+
T Consensus 319 ~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 319 TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCcEEEEeccCceeEeec
Confidence 999999999999998744
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=6e-22 Score=269.52 Aligned_cols=275 Identities=13% Similarity=0.193 Sum_probs=210.2
Q ss_pred cCCCeEEecCCCceEEEecCCCCCC-CcccccccceeccccCcceeEEEEEcCC-CCEEEEEEcCCcEEEEecCCcccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSG-ADEWHFPRALAFASSGIRSSAVVSITHD-KEIITGGHVDGSIKLLTSDGAKTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~-~~ew~~p~sls~hs~gI~Svt~VafSpD-GklLASGS~DGsIrVWDl~tgkll~ 2032 (2342)
++|..+++++.|+.|++|+...... ......+..... +...+.+++|++. +.+|++|+.||+|+|||+.+++.+.
T Consensus 493 ~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~ 569 (793)
T PLN00181 493 RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA---SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT 569 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCcccccccccccceEEec---ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 4678899999999999998543110 011111111111 1123556889874 6799999999999999999999999
Q ss_pred ecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCC
Q 000085 2033 TASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG 2111 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~ 2111 (2342)
.+.+|.+.|++++|+| ++.+|+||+.|++|++||+.++..
T Consensus 570 ~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~--------------------------------------- 610 (793)
T PLN00181 570 EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS--------------------------------------- 610 (793)
T ss_pred EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE---------------------------------------
Confidence 9999999999999997 789999999999999999987421
Q ss_pred ceEEecCCCCCeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCe-EEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEE
Q 000085 2112 PIHVLRGHHREILCCCVS-SDLGVVVSCSDSSDLLLHSIRRGR-LIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSF 2187 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafS-PDg~lLaSGS~DGtIrIWDLrTGk-lIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~ 2187 (2342)
+..+..| ..|.++.|+ +++.++++|+.||+|++||++++. .+..+.+|. +..+.|. ++..++.+..++.+++|
T Consensus 611 -~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiW 687 (793)
T PLN00181 611 -IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLW 687 (793)
T ss_pred -EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEE
Confidence 2233333 578999995 569999999999999999998876 466777764 6778886 77788888899999999
Q ss_pred EeCCc------eeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCcc
Q 000085 2188 TLNGV------LVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFD 2261 (2342)
Q Consensus 2188 dlnG~------~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ia 2261 (2342)
++... .......+|...+++++|++++.++++|+.
T Consensus 688 d~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~--------------------------------------- 728 (793)
T PLN00181 688 DLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE--------------------------------------- 728 (793)
T ss_pred eCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC---------------------------------------
Confidence 98521 122233458899999999999999999974
Q ss_pred CCCCeEEEEECCCCeEEEEEe------------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2262 FPSPSICFLDLHTLKVFHVLK------------LGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2262 s~DGsIrIWDL~Tgk~L~tL~------------lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
|+.|++|+......+..+. ..|...|.+++|++++..|++|+.||.|+||+.
T Consensus 729 --D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 729 --TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred --CCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 5667777765544332221 134567999999999999999999999999983
No 36
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.91 E-value=3.2e-22 Score=228.92 Aligned_cols=243 Identities=16% Similarity=0.168 Sum_probs=212.4
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
..+.++.|++|.+.|++++.||.+.|||.-+...++.+.-...+|..++|+|.|++++.|+.|+.+.||++.+....
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~--- 132 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE--- 132 (343)
T ss_pred cceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccc---
Confidence 34566999999999999999999999999998888888888999999999999999999999999999999863110
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
+ .......+.+|++.+.|+.|-+ ...|+|+|.|.++.+||+++|+.++
T Consensus 133 --------------------------g-----~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~ 180 (343)
T KOG0286|consen 133 --------------------------G-----NVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQ 180 (343)
T ss_pred --------------------------c-----cceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEE
Confidence 0 0123456899999999999987 4568999999999999999999999
Q ss_pred EEecCC--cEEEEEec-CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccc
Q 000085 2157 RLVGVD--AHAVSLSS-EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233 (2342)
Q Consensus 2157 sL~gh~--vssLSfSp-DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~ 2233 (2342)
.|.+|. +..++++| +++.++.+.-++..++|++......+.+.+|...|++|.|.|+|.-+++|+.
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----------- 249 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----------- 249 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC-----------
Confidence 999996 67778889 9999999999999999999866667777789999999999999999999973
Q ss_pred ccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec-CCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL-GEGQDITALALNKDNTNLLVSTADKQLIV 2312 (2342)
Q Consensus 2234 Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l-gHs~~ItsLafSPDG~~LaSGSsDGsIrV 2312 (2342)
|++.++||++..+.+..+.. .-..+|++++||..|++|++|..|..+.|
T Consensus 250 ------------------------------D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~v 299 (343)
T KOG0286|consen 250 ------------------------------DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNV 299 (343)
T ss_pred ------------------------------CceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeE
Confidence 67799999999888887762 12368999999999999999999999999
Q ss_pred EeC
Q 000085 2313 FTD 2315 (2342)
Q Consensus 2313 WDi 2315 (2342)
||.
T Consensus 300 WDt 302 (343)
T KOG0286|consen 300 WDT 302 (343)
T ss_pred eec
Confidence 994
No 37
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.90 E-value=8.6e-24 Score=254.20 Aligned_cols=273 Identities=16% Similarity=0.157 Sum_probs=228.7
Q ss_pred eeEEEEEcC-CCCEEEEEEcCCcEEEEecCC-cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1998 SSAVVSITH-DKEIITGGHVDGSIKLLTSDG-AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1998 Svt~VafSp-DGklLASGS~DGsIrVWDl~t-gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
.++++.|.| .+.+|++|+.|+.|+||++-. +++++++.||..+|..++|+.+|..+.|+|.|+++++||+++|.+...
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~ 295 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR 295 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEE
Confidence 345588888 888999999999999999876 899999999999999999999999999999999999999999988766
Q ss_pred cccCCCCCCccccccCCC-CCceeecCCC-cccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2076 GTIEPSSGMGTPGNSIGS-STPANASADK-SRRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG-~~Las~s~D~-s~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
+. ....++++.+.|++ +.+.++..++ ++.|++ ++.++.+..|-+.|..+.|-++|.++++.+.|++++||+.+.
T Consensus 296 f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~ 373 (503)
T KOG0282|consen 296 FH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI 373 (503)
T ss_pred Ee--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCC
Confidence 52 34456788899998 4556666554 455766 456778888999999999999999999999999999999998
Q ss_pred CeEEEEEe---cCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCce---eeeecCCC--CCCeEEEEEccCCCEEEEEeCC
Q 000085 2152 GRLIRRLV---GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL---VARAKLPL--SGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2152 GklIrsL~---gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~---L~s~~~~H--s~~ItsLafSPDGk~LaSGS~D 2223 (2342)
+-.++.+. .|...+++.+|+|.+++.-..+..+.+|.+.-.. ......+| .+--..+.|||||.+|++|..
T Consensus 374 ~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds- 452 (503)
T KOG0282|consen 374 PVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS- 452 (503)
T ss_pred CccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC-
Confidence 87665543 3567889999999999998889999999864311 11112234 355677899999999999852
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC-CEEE
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN-TNLL 2302 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG-~~La 2302 (2342)
||.+.+||.++-+.+..++ .|.+++..+.|+|.. ..++
T Consensus 453 ----------------------------------------dG~v~~wdwkt~kl~~~lk-ah~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 453 ----------------------------------------DGKVNFWDWKTTKLVSKLK-AHDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred ----------------------------------------CccEEEeechhhhhhhccc-cCCcceEEEEecCCCcceeE
Confidence 7889999999999999999 899999999999954 6799
Q ss_pred EEeCCCcEEEEe
Q 000085 2303 VSTADKQLIVFT 2314 (2342)
Q Consensus 2303 SGSsDGsIrVWD 2314 (2342)
+|+.||.|++|+
T Consensus 492 t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 TCGWDGLIKIWD 503 (503)
T ss_pred ecccCceeEecC
Confidence 999999999996
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=2.7e-22 Score=250.01 Aligned_cols=304 Identities=14% Similarity=0.193 Sum_probs=249.9
Q ss_pred CCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEE
Q 000085 1964 ASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTC 2043 (2342)
Q Consensus 1964 SsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~Vtc 2043 (2342)
..+..+.+++..+ ....+.+.+.+..|.. +.-+-|+.+++|.++..+.+|+|+..+..+. .+.||++.|.+
T Consensus 300 taeQnl~l~d~~~------l~i~k~ivG~ndEI~D--m~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlS 370 (775)
T KOG0319|consen 300 TAEQNLFLYDEDE------LTIVKQIVGYNDEILD--MKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLS 370 (775)
T ss_pred EccceEEEEEccc------cEEehhhcCCchhhee--eeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheee
Confidence 3455666665333 2223334444444444 2234677889999999999999998887665 88999999999
Q ss_pred EEecCCCCEEEEEeCCCceEEEeccCCcccccc---ccCCCCCCccccccCCCC-CceeecCCCc-cccccCC-------
Q 000085 2044 LALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG---TIEPSSGMGTPGNSIGSS-TPANASADKS-RRRRIEG------- 2111 (2342)
Q Consensus 2044 LAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~---~~~~~~~V~svs~SpDG~-~Las~s~D~s-~~~~i~~------- 2111 (2342)
+....+|-+|+|||.|+++++|.++++...... ..+|.+.+.+++++..+. .+++++.|.+ ..|....
T Consensus 371 L~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~ 450 (775)
T KOG0319|consen 371 LDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFP 450 (775)
T ss_pred eeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccc
Confidence 996668889999999999999999554332222 567888999999977664 5577777765 4576644
Q ss_pred ceE----EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEE
Q 000085 2112 PIH----VLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2112 ~l~----~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
... +...|...|+||+++|+..+++|||.|.+.+||++..+....++.+|. +.++.|++..++++..+.|++|+
T Consensus 451 ~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvK 530 (775)
T KOG0319|consen 451 IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVK 530 (775)
T ss_pred ceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEE
Confidence 222 345799999999999999999999999999999999999999999995 89999999999999999999999
Q ss_pred EEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCC
Q 000085 2186 SFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSP 2265 (2342)
Q Consensus 2186 I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DG 2265 (2342)
+|.+.........-+|...|..+.|-.+|+.|++++. ||
T Consensus 531 IW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a-----------------------------------------dG 569 (775)
T KOG0319|consen 531 IWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA-----------------------------------------DG 569 (775)
T ss_pred EEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC-----------------------------------------CC
Confidence 9999876666666779999999999999999998852 77
Q ss_pred eEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2266 SICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2266 sIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
-|++|++++.+|+.++. .|...|++++.++...++++|+.||.|.+|..-+.
T Consensus 570 liKlWnikt~eC~~tlD-~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 570 LIKLWNIKTNECEMTLD-AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred cEEEEeccchhhhhhhh-hccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 89999999999999999 99999999999999999999999999999996554
No 39
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.90 E-value=1.3e-22 Score=243.10 Aligned_cols=279 Identities=12% Similarity=0.118 Sum_probs=215.4
Q ss_pred ceeEEEEEcCCCC-EEEEEEcCCcEEEEecCC--cccc--eec------ccC----CCCeEEEEecCCCCEEEEEeCCCc
Q 000085 1997 RSSAVVSITHDKE-IITGGHVDGSIKLLTSDG--AKTL--ETA------SGH----CAPVTCLALSSDSNFLVTGSQDTT 2061 (2342)
Q Consensus 1997 ~Svt~VafSpDGk-lLASGS~DGsIrVWDl~t--gkll--~tL------~GH----t~~VtcLAfSPDG~~LaSGS~DGT 2061 (2342)
..|.+.+|+|-.. ++++|+.|-+.++|++.. .... ..+ .++ +..||+++|+.+|..||+|+.||.
T Consensus 179 ~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~ 258 (524)
T KOG0273|consen 179 SEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGE 258 (524)
T ss_pred CceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcE
Confidence 3466799999888 999999999999999864 1111 111 122 356999999999999999999999
Q ss_pred eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2062 ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS 2141 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D 2141 (2342)
+++|+.... .+.++..|.++|.++.|+..|.+|++++.|
T Consensus 259 ~riw~~~G~-----------------------------------------l~~tl~~HkgPI~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 259 ARIWNKDGN-----------------------------------------LISTLGQHKGPIFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred EEEEecCch-----------------------------------------hhhhhhccCCceEEEEEcCCCCEEEeccCC
Confidence 999998763 234567899999999999999999999999
Q ss_pred CcEEEEECCCCeEEEEEecCCcE--EEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEE
Q 000085 2142 SDLLLHSIRRGRLIRRLVGVDAH--AVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALI 2219 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrsL~gh~vs--sLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaS 2219 (2342)
|++.+||..+|...+.+.-|+.. .+.|-.+.. ++....++.|+++.+.+........+|.+.|.++.|+|.|.+|++
T Consensus 298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~-F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS 376 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE-FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLAS 376 (524)
T ss_pred ccEEEEeccCceEEEeeeeccCCccceEEecCce-EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEE
Confidence 99999999999999988877643 355555544 455567889999999876666666779999999999999999999
Q ss_pred EeCCCCCCCCCcc---cccccCCC--CCCccccccccccc-----cCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCe
Q 000085 2220 GVNSSSTNNGSYD---NIQGLNSK--QSGTEDFDLASDQS-----VDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDI 2289 (2342)
Q Consensus 2220 GS~DGs~d~~i~d---~Lw~l~~~--~~~~iaFspd~~~s-----~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~I 2289 (2342)
++.|++...|.+. ...++..+ ..+.+.++|++-.. ......+..|++|++||+..+.+++++. .|..+|
T Consensus 377 ~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~-kH~~pV 455 (524)
T KOG0273|consen 377 CSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM-KHQEPV 455 (524)
T ss_pred ecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec-cCCCce
Confidence 9999884433320 00111111 12233344433221 1111223469999999999999999998 899999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2290 TALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2290 tsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.+|+|+|+|+++++|+.||.|.+|+.+..
T Consensus 456 ysvafS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 456 YSVAFSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred EEEEecCCCcEEEecCCCCeeEeccccch
Confidence 99999999999999999999999997655
No 40
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=3.8e-22 Score=234.42 Aligned_cols=294 Identities=15% Similarity=0.218 Sum_probs=229.6
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccc----ce
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKT----LE 2032 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkl----l~ 2032 (2342)
++.|.+++.|+++|+|+..+ .....+.+|.+.+.++..+.-.+....+++++.|.++++|.++.+.. ++
T Consensus 115 ~~~IltgsYDg~~riWd~~G-------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~ 187 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKG-------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK 187 (423)
T ss_pred CceEEEeecCCeeEEEecCC-------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh
Confidence 67788999999999998654 12234677888887755444445555899999999999999887643 34
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
...||.+.|.|++..++|..++|||.|.+++||+..+.. ..+...... -+..+ ...........+
T Consensus 188 ~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~--------~rrk~------~~~~~~~~~r~P 252 (423)
T KOG0313|consen 188 VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDE-EDELESSSN--------RRRKK------QKREKEGGTRTP 252 (423)
T ss_pred HhcccccceeEEEecCCCCeEEeecccceeeecccCCCc-cccccccch--------hhhhh------hhhhhcccccCc
Confidence 556999999999999999999999999999999943321 100000000 00000 000001123467
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCCCeEEEEEeC-
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQHTLSSFTLN- 2190 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssdGsI~I~dln- 2190 (2342)
+..+.||..+|.+|.|++ ...++|+|.|.+|+.||+.+|..+.++.+.. ..++..++..++++.++.+..+++|+..
T Consensus 253 ~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 253 LVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred eEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCC
Confidence 899999999999999987 7789999999999999999999998887654 6788899999999999999999999985
Q ss_pred --CceeeeecCCCCCCeEEEEEccCCCEEE-EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2191 --GVLVARAKLPLSGSIGCMEISLDGHSAL-IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2191 --G~~L~s~~~~Hs~~ItsLafSPDGk~La-SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
|..+.....+|.+.|.++.|+|...+.+ +|+ .|+++
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S-----------------------------------------~D~t~ 370 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS-----------------------------------------YDNTV 370 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEe-----------------------------------------cCCeE
Confidence 5666667777999999999999877655 443 38889
Q ss_pred EEEECCCCe-EEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2268 CFLDLHTLK-VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2268 rIWDL~Tgk-~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
++||+++.+ +++.+. +|...|.++.|+. +..|++||.|++|+|+...
T Consensus 371 klWDvRS~k~plydI~-~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 371 KLWDVRSTKAPLYDIA-GHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEeccCCCcceeec-cCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 999999987 899999 9999999999974 5579999999999999843
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=3.3e-22 Score=248.51 Aligned_cols=341 Identities=15% Similarity=0.153 Sum_probs=253.6
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
+++...++.|..|+.|++|+.... ..+-.+ +++-..|+++.|+..|..|++|+.|+.|.|||+-...-+..
T Consensus 74 ~~d~l~lAVGYaDGsVqif~~~s~------~~~~tf---ngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r 144 (888)
T KOG0306|consen 74 SDDILLLAVGYADGSVQIFSLESE------EILITF---NGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR 144 (888)
T ss_pred cCCcceEEEEecCceEEeeccCCC------ceeeee---cccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE
Confidence 345556799999999999986542 111122 33445567799999999999999999999999988888889
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCC---------------------Cccc-----
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSG---------------------MGTP----- 2087 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~---------------------V~sv----- 2087 (2342)
+.||.+.|+..-|..+.++|+|.|.|+.|++||+.+..+..+. ..+.+. ++-+
T Consensus 145 L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Th-vd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D 223 (888)
T KOG0306|consen 145 LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETH-VDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDD 223 (888)
T ss_pred eecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEE-ecccceEEEEEEecceEEEEecCCceEEEEeecccc
Confidence 9999999999999988899999999999999999986543321 111111 1111
Q ss_pred ---------------------------cccCCCCCceeecCCC-------------------------------------
Q 000085 2088 ---------------------------GNSIGSSTPANASADK------------------------------------- 2103 (2342)
Q Consensus 2088 ---------------------------s~SpDG~~Las~s~D~------------------------------------- 2103 (2342)
...+++++++..+.|.
T Consensus 224 ~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v 303 (888)
T KOG0306|consen 224 EKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDV 303 (888)
T ss_pred cccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccch
Confidence 1112222222222220
Q ss_pred -----------------------------------------ccccc---cCCc---------eEEecCCCCCeEEEEEec
Q 000085 2104 -----------------------------------------SRRRR---IEGP---------IHVLRGHHREILCCCVSS 2130 (2342)
Q Consensus 2104 -----------------------------------------s~~~~---i~~~---------l~~L~GHs~~Vt~VafSP 2130 (2342)
...|. .... ...+.||...|.+++||.
T Consensus 304 ~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~ 383 (888)
T KOG0306|consen 304 EKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS 383 (888)
T ss_pred hhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec
Confidence 00000 0000 134568999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEE
Q 000085 2131 DLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEI 2210 (2342)
Q Consensus 2131 Dg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLaf 2210 (2342)
+...++||+. +.+++|+..++++++++...-+.+..|-|.++.++.+..+|.+.+|++....+......|++.|++++.
T Consensus 384 d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 384 DSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL 462 (888)
T ss_pred CceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeee
Confidence 8887777765 689999999999999998877778889999999999999999999999765555555579999999999
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCC-----------------------CCccccccccccccCCCCccCCCCeE
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ-----------------------SGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~-----------------------~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
+||++.+++||.|.+ .++|++.--. .-+..++|++.... ++.-|.++
T Consensus 463 ~pD~~g~vT~saDkt------VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La----VsLLdnTV 532 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKT------VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA----VSLLDNTV 532 (888)
T ss_pred cCCCCceEEecCCcE------EEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE----EEeccCeE
Confidence 999999999998877 3444432111 11113333332222 22348999
Q ss_pred EEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2268 CFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2268 rIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+||-+.+.+..-++. ||.-||.|+.+|||+..++|||.|..|+||-.+
T Consensus 533 kVyflDtlKFflsLY-GHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 533 KVYFLDTLKFFLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred EEEEecceeeeeeec-ccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 999999999888887 999999999999999999999999999999743
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.89 E-value=4.1e-23 Score=243.87 Aligned_cols=236 Identities=16% Similarity=0.257 Sum_probs=207.0
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
.|..|.|+|+|+.|++|+..|.+.+|+..+-.....++.|..+|+++.|+++|.+++||+.+|.|++|+..-.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn------- 170 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN------- 170 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-------
Confidence 4677999999999999999999999998766556677899999999999999999999999999999998752
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHH-REILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs-~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
.++.+++|. ..|++++|+|+...++|||.||+|+|||....+.-+
T Consensus 171 ----------------------------------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~ 216 (464)
T KOG0284|consen 171 ----------------------------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER 216 (464)
T ss_pred ----------------------------------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh
Confidence 122345554 899999999999999999999999999999998888
Q ss_pred EEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccc
Q 000085 2157 RLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNI 2234 (2342)
Q Consensus 2157 sL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~L 2234 (2342)
.+.+|+ +.++.|+|...+++.++.+..|++|+.....-......|...|..+.|++++++|+++|.
T Consensus 217 vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk------------ 284 (464)
T KOG0284|consen 217 VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK------------ 284 (464)
T ss_pred eeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC------------
Confidence 888886 899999999999999999999999998744333334459999999999999999999974
Q ss_pred cccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEE
Q 000085 2235 QGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN-TNLLVSTADKQLIVF 2313 (2342)
Q Consensus 2235 w~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG-~~LaSGSsDGsIrVW 2313 (2342)
|..++++|+++.+.+.++. +|...|+++.|+|-. ..|.+|+.||.|..|
T Consensus 285 -----------------------------D~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~ 334 (464)
T KOG0284|consen 285 -----------------------------DQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGSDGSVVHW 334 (464)
T ss_pred -----------------------------CceEEEEehhHhHHHHHhh-cchhhheeeccccccccceeeccCCCceEEE
Confidence 4569999999999999999 999999999999954 567789999999999
Q ss_pred eCC
Q 000085 2314 TDP 2316 (2342)
Q Consensus 2314 Di~ 2316 (2342)
.++
T Consensus 335 ~v~ 337 (464)
T KOG0284|consen 335 VVG 337 (464)
T ss_pred ecc
Confidence 976
No 43
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.8e-22 Score=233.56 Aligned_cols=262 Identities=16% Similarity=0.192 Sum_probs=220.2
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC-cccc
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-SRRR 2107 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~ 2107 (2342)
...+.+.||..+|+.+-|+|+-..+++++.|++|++||..+++.... ..+|..++..++++..|+.+++++.|. +..|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~-LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERS-LRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhh-hhccccceeEEEEecCccEEEecCCccchhhe
Confidence 45667889999999999999999999999999999999999887443 467777799999999999999999987 5667
Q ss_pred ccC---CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCC
Q 000085 2108 RIE---GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQH 2182 (2342)
Q Consensus 2108 ~i~---~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdG 2182 (2342)
+.. .++..+.+|...|.+++|-|.|++|+|++.|.+|+.|++.+|.++.++.+|. +..+..+.||.+++....+.
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dq 257 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQ 257 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCc
Confidence 764 3567788999999999999999999999999999999999999999999987 78899999999999999999
Q ss_pred eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccC
Q 000085 2183 TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDF 2262 (2342)
Q Consensus 2183 sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias 2262 (2342)
++++|.+..+.-......|.-+|.|++|-|...+=-+....++. ..........
T Consensus 258 tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~--------------------------~~~~~l~s~S 311 (406)
T KOG0295|consen 258 TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST--------------------------NGGQVLGSGS 311 (406)
T ss_pred eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC--------------------------CCccEEEeec
Confidence 99999997654444445599999999999875421111000000 0111122234
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.|++|++||+.++.++.++. +|...|..++|+|.|+||+++.+|++++|||+.++
T Consensus 312 rDktIk~wdv~tg~cL~tL~-ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 312 RDKTIKIWDVSTGMCLFTLV-GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred ccceEEEEeccCCeEEEEEe-cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence 69999999999999999999 99999999999999999999999999999997665
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.2e-22 Score=242.56 Aligned_cols=357 Identities=15% Similarity=0.165 Sum_probs=253.6
Q ss_pred CceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEE
Q 000085 1966 GTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLA 2045 (2342)
Q Consensus 1966 D~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLA 2045 (2342)
.+.+.||+..+-.. .+++.....++++ ..|-...+.+++|+.|..||||++.+++.+.++..|.+-|.|++
T Consensus 34 nG~V~IWnyetqtm------VksfeV~~~PvRa---~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~ia 104 (794)
T KOG0276|consen 34 NGDVQIWNYETQTM------VKSFEVSEVPVRA---AKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIA 104 (794)
T ss_pred cCeeEEEeccccee------eeeeeecccchhh---heeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeee
Confidence 35789998766222 2233333444544 67778888999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccC-CCCCceeecCCCc-cccccCC--ceEEecCCCC
Q 000085 2046 LSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI-GSSTPANASADKS-RRRRIEG--PIHVLRGHHR 2121 (2342)
Q Consensus 2046 fSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp-DG~~Las~s~D~s-~~~~i~~--~l~~L~GHs~ 2121 (2342)
.+|...+++|+|.|-+|++||++..-.......+|...|..+++.| |.+.+++++-|.+ ..|..+. +..++.||..
T Consensus 105 vHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek 184 (794)
T KOG0276|consen 105 VHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK 184 (794)
T ss_pred ecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc
Confidence 9999999999999999999999987655555788999999999999 5677888888876 5577754 5788999999
Q ss_pred CeEEEEEecCC--CEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee
Q 000085 2122 EILCCCVSSDL--GVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2122 ~Vt~VafSPDg--~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~ 2197 (2342)
.|+||++-+-| .+++||+.|.+|+|||..+..|++++.+|. +..++|.|.=.+++.++.||++++|....-.+...
T Consensus 185 GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 185 GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhh
Confidence 99999998744 599999999999999999999999999985 78999999999999999999999999776544443
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE
Q 000085 2198 KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV 2277 (2342)
Q Consensus 2198 ~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~ 2277 (2342)
..-.-++|+|++-.+.+..++.|...|......+...=.......+.+.+................++ ++..|+.
T Consensus 265 Ln~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~-----ev~DgEr 339 (794)
T KOG0276|consen 265 LNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQK-----EVTDGER 339 (794)
T ss_pred hhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcc-----cccCCcc
Confidence 33356899999999999999999765552111110000000000011111110000000000000000 1222222
Q ss_pred EEE--Eec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCChhhhhhhhhccccCC-Ccc
Q 000085 2278 FHV--LKL-GEGQDITALALNKDNTNLLVSTADKQLIVFTDPALSLKVVDQMLKLGWEGD-GLS 2337 (2342)
Q Consensus 2278 L~t--L~l-gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs~k~LdQLLk~GWegD-GLs 2337 (2342)
+.- -.+ ...-....++-+|+|+++++ +.||..+||..-.++.+...+-+...|..| +-.
T Consensus 340 L~LsvKeLgs~eiyPq~L~hsPNGrfV~V-cgdGEyiIyTala~RnK~fG~~~eFvw~~dsne~ 402 (794)
T KOG0276|consen 340 LPLSVKELGSVEIYPQTLAHSPNGRFVVV-CGDGEYIIYTALALRNKAFGSGLEFVWAADSNEF 402 (794)
T ss_pred ccchhhhccccccchHHhccCCCCcEEEE-ecCccEEEEEeeehhhcccccceeEEEcCCCCeE
Confidence 110 000 01112345778899986555 558999999977777778888888888888 443
No 45
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.88 E-value=3.9e-22 Score=236.11 Aligned_cols=269 Identities=22% Similarity=0.264 Sum_probs=219.0
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++...+++++.|..|++|+.... . ..+-.++.+..+++.+ +.|.++++.+++.+.|+.+++|+++..+...++
T Consensus 185 ~~sdtlatgg~Dr~Ik~W~v~~~-k---~~~~~tLaGs~g~it~---~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL 257 (459)
T KOG0288|consen 185 RNSDTLATGGSDRIIKLWNVLGE-K---SELISTLAGSLGNITS---IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL 257 (459)
T ss_pred cCcchhhhcchhhhhhhhhcccc-h---hhhhhhhhccCCCcce---eeecCCCceEEeecCCCceeeeeccchhhhhhh
Confidence 34477889999999999985441 1 2233455555555555 999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceE
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIH 2114 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~ 2114 (2342)
.||++.|+++.|......+++|+.|.+|++||+....+..+..
T Consensus 258 sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l------------------------------------- 300 (459)
T KOG0288|consen 258 SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL------------------------------------- 300 (459)
T ss_pred cccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-------------------------------------
Confidence 9999999999999777679999999999999999865544321
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCCCeEEEEEeCCce
Q 000085 2115 VLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL 2193 (2342)
Q Consensus 2115 ~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssdGsI~I~dlnG~~ 2193 (2342)
. ...+..|+.+ ...++||-.|++|++||++++.+.++...++ ++.+..+++|.-++...++..+.++++.+..
T Consensus 301 --~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e 374 (459)
T KOG0288|consen 301 --P--GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE 374 (459)
T ss_pred --c--cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeeccccc
Confidence 1 1122333332 5568899999999999999999999988765 7889999999888888889999999988766
Q ss_pred eeeecCC----CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEE
Q 000085 2194 VARAKLP----LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICF 2269 (2342)
Q Consensus 2194 L~s~~~~----Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrI 2269 (2342)
+...... .....+.+.|||++.|+++||. ||.|+|
T Consensus 375 I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~-----------------------------------------dgsv~i 413 (459)
T KOG0288|consen 375 IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA-----------------------------------------DGSVYI 413 (459)
T ss_pred EEEEeeccccccccccceeEECCCCceeeeccC-----------------------------------------CCcEEE
Confidence 5544322 3345899999999999999973 778999
Q ss_pred EECCCCeEEEEEecCCCC-CeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2270 LDLHTLKVFHVLKLGEGQ-DITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2270 WDL~Tgk~L~tL~lgHs~-~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
|++.++++...+...+.. .|++++|+|.|..|++++.++.+.+|.
T Consensus 414 W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 414 WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999998866655 699999999999999999999999994
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=3.1e-21 Score=239.96 Aligned_cols=285 Identities=14% Similarity=0.200 Sum_probs=233.5
Q ss_pred ceeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccc
Q 000085 1951 PFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKT 2030 (2342)
Q Consensus 1951 ~flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkl 2030 (2342)
.+.+..+..++.++.+..+++|+..+... .+++.. .-+.|..|-|.+++++.|...|.+.|||+.+...
T Consensus 378 sl~vS~d~~~~~Sga~~SikiWn~~t~kc------iRTi~~-----~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAGESIKIWNRDTLKC------IRTITC-----GYILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred EEEeecCceeeeecCCCcEEEEEccCcce------eEEecc-----ccEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 35556666666666777999999776222 121111 1345688999999999999999999999999999
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
+.++..|.+.|+.++.+||+..++|||.|.||++||+.--... | | . ......+
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~-----------------~-g------t--~~k~lsl- 499 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV-----------------P-G------T--QKKVLSL- 499 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc-----------------C-c------c--cceeeee-
Confidence 9999999999999999999999999999999999998652100 0 0 0 0000000
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
....++ .-++.|.|+.+||||++++.+=.|.+|+||-+.+-+..-++.||. +.++.+|||+..++.++.|..+++|-
T Consensus 500 ~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 500 KHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred ccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 011112 235789999999999999999999999999999999999999996 78888999999999999999999999
Q ss_pred eCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEE
Q 000085 2189 LNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSIC 2268 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIr 2268 (2342)
++-..-....+.|++.|.++.|.|...++.++|. |+.|+
T Consensus 579 LdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gK-----------------------------------------D~kvK 617 (888)
T KOG0306|consen 579 LDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGK-----------------------------------------DGKVK 617 (888)
T ss_pred cccchhhhhhhcccCceeEEEEcccceeEEEecC-----------------------------------------cceEE
Confidence 9855556666779999999999999888887763 78899
Q ss_pred EEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2269 FLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2269 IWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
-||....+.+.++. +|...|+|++.+|+|.++++++.|.+|++|.-.
T Consensus 618 qWDg~kFe~iq~L~-~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 618 QWDGEKFEEIQKLD-GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred eechhhhhhheeec-cchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 99999999999999 999999999999999999999999999999843
No 47
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=1.9e-21 Score=251.95 Aligned_cols=298 Identities=15% Similarity=0.126 Sum_probs=229.5
Q ss_pred cCCCeEEecC--CCceEEEecCCCCC-CCccc--ccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC--
Q 000085 1955 QHGKASASPA--SGTFLRMFKGPGGS-GADEW--HFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG-- 2027 (2342)
Q Consensus 1955 ~~Gk~LaSsS--sD~tIRVwdg~tgs-~~~ew--~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t-- 2027 (2342)
++|..+++++ .|+.+++|+..... ...++ ..+.-+.....+..+++|+.|++||++||+|+.|+.|.||....
T Consensus 23 pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~ 102 (942)
T KOG0973|consen 23 PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIG 102 (942)
T ss_pred CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccC
Confidence 4567777887 77888899865422 11222 24666677777888999999999999999999999999999772
Q ss_pred --------c--------ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccC
Q 000085 2028 --------A--------KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI 2091 (2342)
Q Consensus 2028 --------g--------kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp 2091 (2342)
| +.+.++.+|...|..++|+|++.+|+|+|.|++|.||+..+.
T Consensus 103 ~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--------------------- 161 (942)
T KOG0973|consen 103 SGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF--------------------- 161 (942)
T ss_pred CcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc---------------------
Confidence 1 245678999999999999999999999999999999998874
Q ss_pred CCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--------c
Q 000085 2092 GSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--------A 2163 (2342)
Q Consensus 2092 DG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--------v 2163 (2342)
..+.++.+|.+.|-.+.|.|-|++++|-+.|++|+||.+.+....+++..+- .
T Consensus 162 -------------------~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 162 -------------------ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF 222 (942)
T ss_pred -------------------eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCccee
Confidence 3456789999999999999999999999999999999988877777776532 4
Q ss_pred EEEEEecCCcEEEEEe----CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC-CCCCCCCCcccccccC
Q 000085 2164 HAVSLSSEGVIMTWNK----LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN-SSSTNNGSYDNIQGLN 2238 (2342)
Q Consensus 2164 ssLSfSpDG~IlVwds----sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~-DGs~d~~i~d~Lw~l~ 2238 (2342)
.-++|||||++++... ...++.+++-.+........+|..++.++.|+|. ++-.-. +|. .
T Consensus 223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~---lfe~~~~ng~----~-------- 287 (942)
T KOG0973|consen 223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK---LFERNNKNGT----S-------- 287 (942)
T ss_pred eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChH---HhccccccCC----c--------
Confidence 6789999999987652 2235677776666666667779999999999973 110000 000 0
Q ss_pred CCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2239 SKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2239 ~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
-.++ ........+..|++|.||.....+++..+..-....|..++|+|||..|++++.||+|.++.+.+
T Consensus 288 --------~~~~--~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 288 --------TQPN--CYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred --------cCCC--cceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 0000 00001112346999999999998888877655678899999999999999999999999999654
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6e-21 Score=212.97 Aligned_cols=267 Identities=16% Similarity=0.179 Sum_probs=218.9
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
+|.+..++++|+++|+|++..+... ++.+.|. +-+.-++.+.|+..+++|+.|..|.+||+.+|+.++.+.
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~li------ktYsghG---~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r 98 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALI------KTYSGHG---HEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR 98 (307)
T ss_pred CCCEEEEcCCCceEEeeccccccee------eeecCCC---ceeeeccccccccccccCCCCceEEEEEcccCeeeeecc
Confidence 5778889999999999997764322 2233343 334457889999999999999999999999999999999
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEE
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~ 2115 (2342)
||.+.|+.+.|+.+...++|||.|.++++||.+... .+|+++
T Consensus 99 gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s--------------------------------------~ePiQi 140 (307)
T KOG0316|consen 99 GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS--------------------------------------FEPIQI 140 (307)
T ss_pred cccceeeEEEecCcceEEEeccccceeEEEEcccCC--------------------------------------CCccch
Confidence 999999999999999999999999999999998731 256777
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee
Q 000085 2116 LRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA 2195 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~ 2195 (2342)
+....+.|.++.+. +..|++||.||+++.||++.|+.....-++++++++|++||+..+.+.-++.+++.+-....+.
T Consensus 141 ldea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred hhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 88788899998874 6789999999999999999999999999999999999999999999999999999998644444
Q ss_pred eecCCCCCCeEE--EEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC
Q 000085 2196 RAKLPLSGSIGC--MEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH 2273 (2342)
Q Consensus 2196 s~~~~Hs~~Its--LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~ 2273 (2342)
....+|...=.. .+++....++++|+ .||.|++||+.
T Consensus 219 ~sYkGhkn~eykldc~l~qsdthV~sgS-----------------------------------------EDG~Vy~wdLv 257 (307)
T KOG0316|consen 219 KSYKGHKNMEYKLDCCLNQSDTHVFSGS-----------------------------------------EDGKVYFWDLV 257 (307)
T ss_pred HHhcccccceeeeeeeecccceeEEecc-----------------------------------------CCceEEEEEec
Confidence 445556554333 34555666777665 38889999999
Q ss_pred CCeEEEEEecCCCCC-eEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2274 TLKVFHVLKLGEGQD-ITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2274 Tgk~L~tL~lgHs~~-ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
....+..+. .++.. |++++++|.-..|++++.. .+..|.
T Consensus 258 d~~~~sk~~-~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 258 DETQISKLS-VVSTVIVTDLSCHPTMDDFITATGH-GDLFWY 297 (307)
T ss_pred cceeeeeec-cCCceeEEeeecccCccceeEecCC-ceecee
Confidence 999999988 56665 8999999988777777644 455554
No 49
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.88 E-value=3.7e-21 Score=216.24 Aligned_cols=228 Identities=15% Similarity=0.197 Sum_probs=197.8
Q ss_pred EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccc
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGN 2089 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~ 2089 (2342)
+|++++.|.+||+|...+|.+..+++.....|..+.+.||++.|++++ ...|++||++++.
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~n------------------ 72 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNN------------------ 72 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCC------------------
Confidence 799999999999999999999999997778899999999999999877 4689999999852
Q ss_pred cCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEE
Q 000085 2090 SIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSL 2168 (2342)
Q Consensus 2090 SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSf 2168 (2342)
..++.++.+|+..|++|.|..+|++++|||+||+++|||+|...+-+.+... .+..+..
T Consensus 73 --------------------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvl 132 (311)
T KOG0315|consen 73 --------------------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVL 132 (311)
T ss_pred --------------------CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEe
Confidence 2467889999999999999999999999999999999999997777777653 4889999
Q ss_pred ecCCcEEEEEeCCCeEEEEEeCCceeeeecCC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccc
Q 000085 2169 SSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDF 2247 (2342)
Q Consensus 2169 SpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaF 2247 (2342)
.|+..-++.+.++|.|++|++..........+ ....|.++.+.|||.+++.+..
T Consensus 133 hpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn------------------------- 187 (311)
T KOG0315|consen 133 HPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN------------------------- 187 (311)
T ss_pred cCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC-------------------------
Confidence 99999999999999999999976544333334 5678999999999999997742
Q ss_pred ccccccccCCCCccCCCCeEEEEECCC------CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2248 DLASDQSVDNNRFDFPSPSICFLDLHT------LKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2248 spd~~~s~ss~~ias~DGsIrIWDL~T------gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.|..++|++-+ .+++.+++ .|...|..+.+|||+++|+++|.|.+++||+.++.
T Consensus 188 ----------------kG~cyvW~l~~~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 188 ----------------KGNCYVWRLLNHQTASELEPVHKFQ-AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ----------------CccEEEEEccCCCccccceEhhhee-cccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 35688888754 35677777 89999999999999999999999999999997765
No 50
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.88 E-value=1e-22 Score=235.21 Aligned_cols=228 Identities=21% Similarity=0.358 Sum_probs=191.2
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
.+|.|+.+ |...+++|..|++|+|||..+..++..+.||++.|.|+.|. .+.|+|||.|.||+|||++++.
T Consensus 198 kgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge----- 268 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE----- 268 (499)
T ss_pred CceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc-----
Confidence 34555555 56789999999999999999999999999999999999995 6799999999999999999963
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR--- 2153 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk--- 2153 (2342)
++.++.+|...|..+.|+ ..+++|+|.|.++.+||+....
T Consensus 269 -----------------------------------~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it 311 (499)
T KOG0281|consen 269 -----------------------------------PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDIT 311 (499)
T ss_pred -----------------------------------hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHH
Confidence 455678899999999996 5789999999999999997654
Q ss_pred EEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccc
Q 000085 2154 LIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233 (2342)
Q Consensus 2154 lIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~ 2233 (2342)
+.+.+.+|....-.+.-|.++++..+.+.+|++|++..........+|...|-|+.+. |+++++|+.
T Consensus 312 ~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSS----------- 378 (499)
T KOG0281|consen 312 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----------- 378 (499)
T ss_pred HHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCC-----------
Confidence 2344566654333444455688888888999999988666666666799999999885 889998862
Q ss_pred ccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVF 2313 (2342)
Q Consensus 2234 Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVW 2313 (2342)
|.+|++||+..|.++..+. ||..-|.|+.|. .+.+++|+.||+|+||
T Consensus 379 ------------------------------DntIRlwdi~~G~cLRvLe-GHEeLvRciRFd--~krIVSGaYDGkikvW 425 (499)
T KOG0281|consen 379 ------------------------------DNTIRLWDIECGACLRVLE-GHEELVRCIRFD--NKRIVSGAYDGKIKVW 425 (499)
T ss_pred ------------------------------CceEEEEeccccHHHHHHh-chHHhhhheeec--CceeeeccccceEEEE
Confidence 7789999999999999999 999999999994 5679999999999999
Q ss_pred eCC
Q 000085 2314 TDP 2316 (2342)
Q Consensus 2314 Di~ 2316 (2342)
|..
T Consensus 426 dl~ 428 (499)
T KOG0281|consen 426 DLQ 428 (499)
T ss_pred ecc
Confidence 954
No 51
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.88 E-value=7.9e-22 Score=221.15 Aligned_cols=276 Identities=15% Similarity=0.150 Sum_probs=235.5
Q ss_pred ceeEEEEEc---CCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc
Q 000085 1997 RSSAVVSIT---HDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 1997 ~Svt~VafS---pDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
+.|--++|| |+|-+|++++.|+.--+-+-++|.-+.++.||.+.|+...+..+...-+|++.|=+-+|||.-++..+
T Consensus 15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel 94 (334)
T KOG0278|consen 15 RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL 94 (334)
T ss_pred cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh
Confidence 344446665 68889999999999999999999999999999999999999999889999999999999999998877
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccc-ccc---CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRR-RRI---EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSI 2149 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i---~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDL 2149 (2342)
+.+ .|..-+..++|+.|.+.+.+++.++..+ ++. ..+...+.+|.+.|..+-|+...+.++|.+.|++|++||.
T Consensus 95 hsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 95 HSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred hhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence 765 4556688999999999999998887644 333 4467788999999999999999999999999999999999
Q ss_pred CCCeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2150 RRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2150 rTGklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
++|..++++.. +.+..+.+++||+++.... .+.|..|+.+. ..+.... ....|.+..++|+..++++|+.
T Consensus 173 rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGge----- 244 (334)
T KOG0278|consen 173 RTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGE----- 244 (334)
T ss_pred ccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc--CccccccccccCCCceEEecCc-----
Confidence 99999999875 5689999999999887653 46788999864 2334333 4567899999999988888852
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
|..++.||..+++.+..+..+|.++|.||.|+|||...++|+.|
T Consensus 245 ------------------------------------d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 245 ------------------------------------DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred ------------------------------------ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCC
Confidence 67799999999999988744999999999999999999999999
Q ss_pred CcEEEEeCCCC
Q 000085 2308 KQLIVFTDPAL 2318 (2342)
Q Consensus 2308 GsIrVWDi~sL 2318 (2342)
|+|++|.....
T Consensus 289 GTirlWQt~~~ 299 (334)
T KOG0278|consen 289 GTIRLWQTTPG 299 (334)
T ss_pred ceEEEEEecCC
Confidence 99999995433
No 52
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-21 Score=222.35 Aligned_cols=291 Identities=15% Similarity=0.148 Sum_probs=230.7
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
+-++.+-+.++.+|.+|.+++.|.++.||-..+|+.+.++.||++.|+|+..+.+.++++|||.|.++++||+.+|+++.
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la 88 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA 88 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE
Confidence 33455569999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCcc------ccc---------cCCceEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSR------RRR---------IEGPIHVLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~------~~~---------i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
+. ..+..+..+.|+.+|+.++....+... ..+ ...|...+..+...++.+-|.|-+..|++|.
T Consensus 89 ~~--k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh 166 (327)
T KOG0643|consen 89 TW--KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH 166 (327)
T ss_pred Ee--ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence 54 456678888999999887666554221 111 2456888889999999999999999999999
Q ss_pred CCCcEEEEECCCCe-EEEEEec--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCE
Q 000085 2140 DSSDLLLHSIRRGR-LIRRLVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGk-lIrsL~g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~ 2216 (2342)
.||.|.+||+++|+ .+.+... +.++.+++++|..+++.++.+.+-.+|+...-.+.... ....+|++.+++|...+
T Consensus 167 e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty-~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 167 EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY-TTERPVNTAAISPLLDH 245 (327)
T ss_pred CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe-eecccccceecccccce
Confidence 99999999999985 4444443 45889999999999999999999999998764443322 25789999999999999
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
++.|+.....+.+. . ... ...-.-++|++-..+.+..++ +|-++|++|+|||
T Consensus 246 VilgGGqeA~dVTT---------T----------------~~r--~GKFEArFyh~i~eEEigrvk-GHFGPINsvAfhP 297 (327)
T KOG0643|consen 246 VILGGGQEAMDVTT---------T----------------STR--AGKFEARFYHLIFEEEIGRVK-GHFGPINSVAFHP 297 (327)
T ss_pred EEecCCceeeeeee---------e----------------ccc--ccchhhhHHHHHHHHHhcccc-ccccCcceeEECC
Confidence 98886222211100 0 000 000123455555556667777 9999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 000085 2297 DNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2297 DG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+|+..++|++||.|++...+
T Consensus 298 dGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 298 DGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred CCcccccCCCCceEEEEEec
Confidence 99999999999999998743
No 53
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.1e-21 Score=245.47 Aligned_cols=239 Identities=18% Similarity=0.203 Sum_probs=192.5
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC--------------------------------c--------------
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG--------------------------------A-------------- 2028 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t--------------------------------g-------------- 2028 (2342)
+-.++.++.||+||+|||+|+.|+.|+||.+.. .
T Consensus 266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred cCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 345567899999999999999999999998654 0
Q ss_pred --------------ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCC
Q 000085 2029 --------------KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2029 --------------kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~ 2094 (2342)
+++..+.||++.|..|.||.+ ++|+|+|.|.||++|++....++
T Consensus 346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL--------------------- 403 (712)
T KOG0283|consen 346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECL--------------------- 403 (712)
T ss_pred ccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCccee---------------------
Confidence 123457899999999999954 69999999999999999875332
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCC
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEG 2172 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG 2172 (2342)
.+ ..|.+-||||+|+| |.++++|||-||.|+||++...+.+.-...+. ++.+|++|||
T Consensus 404 -------------------~~-F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdG 463 (712)
T KOG0283|consen 404 -------------------KV-FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDG 463 (712)
T ss_pred -------------------eE-EecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCC
Confidence 22 35999999999999 68899999999999999998888776655555 7999999999
Q ss_pred cEEEEEeCCCeEEEEEeCCceeeeecCC---------CCCCeEEEEEccCCC--EEEEEeCCCCCCCCCcccccccCCCC
Q 000085 2173 VIMTWNKLQHTLSSFTLNGVLVARAKLP---------LSGSIGCMEISLDGH--SALIGVNSSSTNNGSYDNIQGLNSKQ 2241 (2342)
Q Consensus 2173 ~IlVwdssdGsI~I~dlnG~~L~s~~~~---------Hs~~ItsLafSPDGk--~LaSGS~DGs~d~~i~d~Lw~l~~~~ 2241 (2342)
+..+.+.-+|.+++|+..+..+...... |. .|+.+.|.|... .|+|.
T Consensus 464 k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTS--------------------- 521 (712)
T KOG0283|consen 464 KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTS--------------------- 521 (712)
T ss_pred ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEec---------------------
Confidence 9999999999999999987554432211 33 789998886433 44432
Q ss_pred CCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCC-CeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2242 SGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQ-DITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2242 ~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~-~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.|..|+|+|..+.+++..++..+.. .-....|+.||++|+++++|..|+||+.+..
T Consensus 522 ---------------------nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 522 ---------------------NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ---------------------CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 3788999999988888888833332 2356789999999999999999999997544
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=6.2e-21 Score=239.22 Aligned_cols=273 Identities=16% Similarity=0.142 Sum_probs=233.8
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
..++|+|...+|.++--.|.|++||+.-+.++..+..|.++|..++|+|++.+++||+.|-.|+||+..+..++.+. .+
T Consensus 13 KglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL-~G 91 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL-LG 91 (1202)
T ss_pred cceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-cc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999998776665 57
Q ss_pred CCCCCccccccCCCCCceeecCCCcc---ccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSR---RRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR--- 2153 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~---~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk--- 2153 (2342)
|-..|..+.|++.-..+.+++.|.+. .|...+++.++.||...|.|..|+|..+.++|+|.|.+|+|||+..-+
T Consensus 92 HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 92 HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence 78889999999999999999999764 367788999999999999999999999999999999999999985210
Q ss_pred --------------------------EEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceee--eecCCCCC
Q 000085 2154 --------------------------LIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA--RAKLPLSG 2203 (2342)
Q Consensus 2154 --------------------------lIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~--s~~~~Hs~ 2203 (2342)
..+.+.+|. +.-++|.|.-.+++.+..|..+++|..+....- ....+|.+
T Consensus 172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n 251 (1202)
T KOG0292|consen 172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN 251 (1202)
T ss_pred CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC
Confidence 112345553 788899999999999999999999998753322 22345999
Q ss_pred CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec
Q 000085 2204 SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL 2283 (2342)
Q Consensus 2204 ~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l 2283 (2342)
.|+|+-|+|...++++.| .|++|+|||+...+.++++.
T Consensus 252 nVssvlfhp~q~lIlSns-----------------------------------------EDksirVwDm~kRt~v~tfr- 289 (1202)
T KOG0292|consen 252 NVSSVLFHPHQDLILSNS-----------------------------------------EDKSIRVWDMTKRTSVQTFR- 289 (1202)
T ss_pred CcceEEecCccceeEecC-----------------------------------------CCccEEEEecccccceeeee-
Confidence 999999999999999765 37889999999999999998
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2284 GEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2284 gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
...+..+.++.+|..+. +.++.|+.+.||...
T Consensus 290 rendRFW~laahP~lNL-fAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 290 RENDRFWILAAHPELNL-FAAGHDSGMIVFKLE 321 (1202)
T ss_pred ccCCeEEEEEecCCcce-eeeecCCceEEEEEc
Confidence 55678999999999984 456677777777743
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=3.7e-20 Score=212.12 Aligned_cols=257 Identities=20% Similarity=0.270 Sum_probs=208.8
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
++..+++++.++.+++|+..++. .......+. ..+..+.|+++++++++++.||.|++|++.+++.+..+.
T Consensus 20 ~~~~l~~~~~~g~i~i~~~~~~~------~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~ 90 (289)
T cd00200 20 DGKLLATGSGDGTIKVWDLETGE------LLRTLKGHT---GPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90 (289)
T ss_pred CCCEEEEeecCcEEEEEEeeCCC------cEEEEecCC---cceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe
Confidence 45677888889999999866522 111222232 334568999999999999999999999999988888899
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC-cccccc--CCc
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-SRRRRI--EGP 2112 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i--~~~ 2112 (2342)
+|...|.++.|++++.++++++.|+.|.+||+.++...... ..+...+.++.+++++..++++..++ ...|+. ...
T Consensus 91 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 169 (289)
T cd00200 91 GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169 (289)
T ss_pred ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence 99999999999999999999999999999999876544433 25666788999999988888777444 455665 456
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
...+..|...|.+++|+|++..+++++.||.|++||+++++.+..+..+. +..+++++++.+++.+..++.+++|++.
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 170 VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 77788999999999999999999999999999999999999888885553 7889999999888888879999999997
Q ss_pred CceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2191 GVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2191 G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
..........|...|.+++|++++.++++++.
T Consensus 250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred CceeEEEccccCCcEEEEEECCCCCEEEEecC
Confidence 43333334468889999999999999998864
No 56
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.87 E-value=3.4e-20 Score=252.54 Aligned_cols=236 Identities=14% Similarity=0.245 Sum_probs=195.1
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc----c----cceecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEec
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGA----K----TLETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tg----k----ll~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl 2067 (2342)
..+++++|+|+|++|++|+.|+.|+||+..+. . ....+. +...|.+++|++ ++.+|++|+.||+|++||+
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 34667999999999999999999999997542 1 122233 346799999987 4789999999999999999
Q ss_pred cCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEE
Q 000085 2068 HRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrI 2146 (2342)
.++. .+..+.+|.+.|++++|+| ++.+|+||+.||+|++
T Consensus 563 ~~~~----------------------------------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~i 602 (793)
T PLN00181 563 ARSQ----------------------------------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKL 602 (793)
T ss_pred CCCe----------------------------------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEE
Confidence 7642 2445688999999999996 7899999999999999
Q ss_pred EECCCCeEEEEEecC-CcEEEEE-ecCCcEEEEEeCCCeEEEEEeCCce-eeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2147 HSIRRGRLIRRLVGV-DAHAVSL-SSEGVIMTWNKLQHTLSSFTLNGVL-VARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2147 WDLrTGklIrsL~gh-~vssLSf-SpDG~IlVwdssdGsI~I~dlnG~~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
||++++..+..+..+ .+.++.| +++|..++.+..++.|++|++.... .......|...|+++.|. ++.++++|+.
T Consensus 603 Wd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~- 680 (793)
T PLN00181 603 WSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST- 680 (793)
T ss_pred EECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC-
Confidence 999999998888765 3667777 4579999999999999999986432 222334599999999997 7888988863
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC------CeEEEEEecCCCCCeEEEEEecC
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT------LKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T------gk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
|++|++||+.. .+++..+. +|...+++++|+++
T Consensus 681 ----------------------------------------D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~ 719 (793)
T PLN00181 681 ----------------------------------------DNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVS 719 (793)
T ss_pred ----------------------------------------CCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCC
Confidence 67799999874 35677887 89999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 000085 2298 NTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2298 G~~LaSGSsDGsIrVWDi~ 2316 (2342)
+.+|++|+.||.|++|+..
T Consensus 720 ~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 720 DGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CCEEEEEeCCCEEEEEECC
Confidence 9999999999999999953
No 57
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.3e-21 Score=234.64 Aligned_cols=240 Identities=14% Similarity=0.235 Sum_probs=212.9
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
.|.++.++|....+.++-..|.|.|||.++...++.+.-..-+|.+..|-+-.+++++||.|..|+|++.+++
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~------- 87 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG------- 87 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc-------
Confidence 3556999999999999999999999999999999999988999999999999999999999999999999985
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG-RLIR 2156 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG-klIr 2156 (2342)
..++.+..|.+.|.|++++|...+++|+|.|-+|++||...+ .+.+
T Consensus 88 ---------------------------------ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q 134 (794)
T KOG0276|consen 88 ---------------------------------EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ 134 (794)
T ss_pred ---------------------------------eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee
Confidence 346678999999999999999999999999999999999865 6788
Q ss_pred EEecCC--cEEEEEec-CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCC--CEEEEEeCCCCCCCCCc
Q 000085 2157 RLVGVD--AHAVSLSS-EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDG--HSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2157 sL~gh~--vssLSfSp-DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDG--k~LaSGS~DGs~d~~i~ 2231 (2342)
++.+|+ +-.++|.| |...++.++-|+++++|.+..........+|...|+|+.+-+-| .+|++|+.
T Consensus 135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD--------- 205 (794)
T KOG0276|consen 135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD--------- 205 (794)
T ss_pred EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC---------
Confidence 999987 66778888 45677888899999999986544444444699999999998754 68998862
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLI 2311 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIr 2311 (2342)
|..|+|||..+..|++++. ||...|..+.|+|.-..+++|++||+++
T Consensus 206 --------------------------------D~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lpiiisgsEDGTvr 252 (794)
T KOG0276|consen 206 --------------------------------DLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELPIIISGSEDGTVR 252 (794)
T ss_pred --------------------------------CceEEEeecchHHHHHHhh-cccccceEEEecCCCcEEEEecCCccEE
Confidence 6779999999999999999 9999999999999999999999999999
Q ss_pred EEeCCCCC
Q 000085 2312 VFTDPALS 2319 (2342)
Q Consensus 2312 VWDi~sLs 2319 (2342)
||+..+.+
T Consensus 253 iWhs~Ty~ 260 (794)
T KOG0276|consen 253 IWNSKTYK 260 (794)
T ss_pred EecCccee
Confidence 99976664
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.1e-21 Score=213.51 Aligned_cols=235 Identities=19% Similarity=0.221 Sum_probs=199.8
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
..+.++.|+-||++.++++.|.+|++|+...|.+++++.||...|..++.+.|...+++|+.|..|.+||+.+++
T Consensus 18 gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk----- 92 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK----- 92 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe-----
Confidence 345669999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--eE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG--RL 2154 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG--kl 2154 (2342)
....+.||.+.|+.+.|+.+...+++|+.|.++++||.++. ++
T Consensus 93 -----------------------------------v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP 137 (307)
T KOG0316|consen 93 -----------------------------------VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP 137 (307)
T ss_pred -----------------------------------eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc
Confidence 34567999999999999999999999999999999999864 56
Q ss_pred EEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccc
Q 000085 2155 IRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNI 2234 (2342)
Q Consensus 2155 IrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~L 2234 (2342)
++.+........++.-.++.++.++.+|+++.|++.-..+..-. ...+|+|+.|++||+..++++.
T Consensus 138 iQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l------------ 203 (307)
T KOG0316|consen 138 IQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL------------ 203 (307)
T ss_pred cchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec------------
Confidence 77776544455556666777788888888888888643333333 4569999999999999998863
Q ss_pred cccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCe--EEEEEecCCCEEEEEeCCCcEEE
Q 000085 2235 QGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDI--TALALNKDNTNLLVSTADKQLIV 2312 (2342)
Q Consensus 2235 w~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~I--tsLafSPDG~~LaSGSsDGsIrV 2312 (2342)
|+++++.|-.+|+.+..++ +|...- ...+++....++++|++||.|++
T Consensus 204 -----------------------------~stlrLlDk~tGklL~sYk-Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~ 253 (307)
T KOG0316|consen 204 -----------------------------DSTLRLLDKETGKLLKSYK-GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYF 253 (307)
T ss_pred -----------------------------cceeeecccchhHHHHHhc-ccccceeeeeeeecccceeEEeccCCceEEE
Confidence 6779999999999999998 887543 34567777889999999999999
Q ss_pred EeC
Q 000085 2313 FTD 2315 (2342)
Q Consensus 2313 WDi 2315 (2342)
||.
T Consensus 254 wdL 256 (307)
T KOG0316|consen 254 WDL 256 (307)
T ss_pred EEe
Confidence 994
No 59
>PTZ00421 coronin; Provisional
Probab=99.87 E-value=5.6e-20 Score=236.16 Aligned_cols=248 Identities=14% Similarity=0.134 Sum_probs=186.5
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecC----------Ccccc---eecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEe
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSD----------GAKTL---ETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWR 2066 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~----------tgkll---~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWD 2066 (2342)
+...++|+..+++++.+.....|+.. .|+.. ..+.||.+.|++++|+| ++++|+|||.|++|++||
T Consensus 25 ~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWd 104 (493)
T PTZ00421 25 PSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWG 104 (493)
T ss_pred cccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEe
Confidence 34455555544555555555555533 33322 24789999999999999 889999999999999999
Q ss_pred ccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEE
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLL 2145 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIr 2145 (2342)
+.++.... ....++..+.+|...|.+++|+|++ .++++|+.|++|+
T Consensus 105 i~~~~~~~---------------------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 105 IPEEGLTQ---------------------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVN 151 (493)
T ss_pred cCCCcccc---------------------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence 97632100 0123566789999999999999985 6899999999999
Q ss_pred EEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCC-eEEEEEccCCCEEEEEeC
Q 000085 2146 LHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGS-IGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2146 IWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~-ItsLafSPDGk~LaSGS~ 2222 (2342)
|||+++++.+..+.+|. +..++|+++|.+++.+..++.|++|++...........|.+. +..+.|.+++..+++++.
T Consensus 152 IWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~ 231 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGC 231 (493)
T ss_pred EEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEec
Confidence 99999999999998765 788999999999999999999999999743333333446554 456788998888887653
Q ss_pred CCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe-EEEEEecCCCCCeEEEEEecCCCEE
Q 000085 2223 SSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK-VFHVLKLGEGQDITALALNKDNTNL 2301 (2342)
Q Consensus 2223 DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk-~L~tL~lgHs~~ItsLafSPDG~~L 2301 (2342)
+.. .|+.|++||+++.. ++......+...+....|++++.+|
T Consensus 232 s~s-------------------------------------~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 232 SKS-------------------------------------QQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLL 274 (493)
T ss_pred CCC-------------------------------------CCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEE
Confidence 222 27899999998754 4444442344566777899999999
Q ss_pred EEEe-CCCcEEEEeCCCC
Q 000085 2302 LVST-ADKQLIVFTDPAL 2318 (2342)
Q Consensus 2302 aSGS-sDGsIrVWDi~sL 2318 (2342)
++|+ .||.|++|++.+.
T Consensus 275 ~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 275 YIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EEEEeCCCeEEEEEeeCC
Confidence 9887 5999999997654
No 60
>PTZ00421 coronin; Provisional
Probab=99.87 E-value=6.6e-20 Score=235.53 Aligned_cols=222 Identities=14% Similarity=0.149 Sum_probs=179.1
Q ss_pred ceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCc-------ccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEec
Q 000085 1997 RSSAVVSITH-DKEIITGGHVDGSIKLLTSDGA-------KTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1997 ~Svt~VafSp-DGklLASGS~DGsIrVWDl~tg-------kll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl 2067 (2342)
..|.+++|+| ++++|++|+.|++|+|||+.++ ..+..+.+|...|.+++|+|++ ++|+||+.|++|+|||+
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl 155 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDV 155 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence 4466799999 8899999999999999999765 3467789999999999999985 79999999999999999
Q ss_pred cCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2068 HRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIW 2147 (2342)
.++. .+..+.+|...|++++|+|++.++++|+.||+|++|
T Consensus 156 ~tg~----------------------------------------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIw 195 (493)
T PTZ00421 156 ERGK----------------------------------------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNII 195 (493)
T ss_pred CCCe----------------------------------------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEE
Confidence 8742 234567899999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCC---cEEEEEecCCcEEEEEe----CCCeEEEEEeCC--ceeeeecCCCCCCeEEEEEccCCCEEE
Q 000085 2148 SIRRGRLIRRLVGVD---AHAVSLSSEGVIMTWNK----LQHTLSSFTLNG--VLVARAKLPLSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2148 DLrTGklIrsL~gh~---vssLSfSpDG~IlVwds----sdGsI~I~dlnG--~~L~s~~~~Hs~~ItsLafSPDGk~La 2218 (2342)
|+++++.+.++.+|. ...+.|.+++..++... .++.+++|++.. ..+......+...+....|++++.+++
T Consensus 196 D~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~ 275 (493)
T PTZ00421 196 DPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLY 275 (493)
T ss_pred ECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEE
Confidence 999999999988875 23567788776665432 468999999863 222222222345666778999999999
Q ss_pred EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC
Q 000085 2219 IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN 2298 (2342)
Q Consensus 2219 SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG 2298 (2342)
+|+. .|+.|++||+.+++.+......+..++.+++|.|..
T Consensus 276 lggk----------------------------------------gDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 276 IGSK----------------------------------------GEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEEe----------------------------------------CCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 8751 278899999999998887765566788899988853
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.86 E-value=2.8e-20 Score=239.63 Aligned_cols=266 Identities=17% Similarity=0.263 Sum_probs=218.3
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
+..+++++.+.++++|+..++ ......+.+|.++ |.++++..-+.++++|+.|.+++|||..+|++..++.|
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~-----~~i~~~l~GH~g~---V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g 289 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNG-----YLILTRLVGHFGG---VWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQG 289 (537)
T ss_pred cCeEEecCCCceeEEeecccc-----eEEEeeccCCCCC---ceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecC
Confidence 566788999999999986552 1112224555555 45588888788999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL 2116 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L 2116 (2342)
|...|.|+... ..++++||.|.+|+||++.++ ..++.+
T Consensus 290 h~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~----------------------------------------~~l~l~ 327 (537)
T KOG0274|consen 290 HTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG----------------------------------------ACLNLL 327 (537)
T ss_pred CCceEEEEEcc--CceEeeccCCceEEEEeccCc----------------------------------------ceEEEe
Confidence 99999999875 568999999999999999975 345667
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCC-cEEEEEeCCCeEEEEEeCCc-ee
Q 000085 2117 RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEG-VIMTWNKLQHTLSSFTLNGV-LV 2194 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG-~IlVwdssdGsI~I~dlnG~-~L 2194 (2342)
.+|.++|+|+..+ +.++++|+.||+|++||+.++++++++.+|.....++..++ ..++-+..|+.|++|++.+. ..
T Consensus 328 ~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c 405 (537)
T KOG0274|consen 328 RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKC 405 (537)
T ss_pred ccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhh
Confidence 7899999999986 88999999999999999999999999999986655555556 88888888999999999876 44
Q ss_pred eeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC
Q 000085 2195 ARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT 2274 (2342)
Q Consensus 2195 ~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T 2274 (2342)
......|..-+.++.+ .+++|++++ .|++|++||..+
T Consensus 406 ~~tl~~h~~~v~~l~~--~~~~Lvs~~-----------------------------------------aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 406 IHTLQGHTSLVSSLLL--RDNFLVSSS-----------------------------------------ADGTIKLWDAEE 442 (537)
T ss_pred hhhhcCCccccccccc--ccceeEecc-----------------------------------------ccccEEEeeccc
Confidence 4444457777765554 477788664 278899999999
Q ss_pred CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2275 LKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2275 gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
++++.++...|...|+++++. ...+++++.||++++||.++..
T Consensus 443 ~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 443 GECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred CceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence 999999993367889988887 4669999999999999977664
No 62
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.85 E-value=9.4e-21 Score=217.11 Aligned_cols=277 Identities=14% Similarity=0.160 Sum_probs=216.4
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCC------------c------ccceecccCCCCeEEEEecCCCCEEEEEeCC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDG------------A------KTLETASGHCAPVTCLALSSDSNFLVTGSQD 2059 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~t------------g------kll~tL~GHt~~VtcLAfSPDG~~LaSGS~D 2059 (2342)
.+.+.+|++||.++|+|+.|.+|+|.|++. | -.++++..|.+.|+++.|+|....|++|+.|
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 356699999999999999999999999861 1 1357889999999999999999999999999
Q ss_pred CceEEEeccCCcccccc-ccCCCCCCccccccCCCCCceeecCCCcc-ccccCCceE-----EecCCCCCeEEEEEecCC
Q 000085 2060 TTILLWRIHRAFTSRTG-TIEPSSGMGTPGNSIGSSTPANASADKSR-RRRIEGPIH-----VLRGHHREILCCCVSSDL 2132 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s~-~~~i~~~l~-----~L~GHs~~Vt~VafSPDg 2132 (2342)
++|+++|+......+.+ .......+.+++|+|.|.+++++....+. .+++..... --.+|++.|++|.+++.+
T Consensus 194 ~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~ 273 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG 273 (430)
T ss_pred CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc
Confidence 99999999875433333 33455678999999999999888776553 344332211 124699999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEec-C---CcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCC-C---CC
Q 000085 2133 GVVVSCSDSSDLLLHSIRRGRLIRRLVG-V---DAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLP-L---SG 2203 (2342)
Q Consensus 2133 ~lLaSGS~DGtIrIWDLrTGklIrsL~g-h---~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~-H---s~ 2203 (2342)
++.++||.||.|++||--+++|++++.. | ++....|+.+|++++....+..+++|.+. |+.+....-. . ..
T Consensus 274 ~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~ 353 (430)
T KOG0640|consen 274 SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK 353 (430)
T ss_pred cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh
Confidence 9999999999999999999999998853 3 36778899999999999999999999986 4444332110 0 00
Q ss_pred CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec
Q 000085 2204 SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL 2283 (2342)
Q Consensus 2204 ~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l 2283 (2342)
--+...|+....|++.- + -..++++-||.++...+..+..
T Consensus 354 ~rtqAvFNhtEdyVl~p-----------------------------D-----------Eas~slcsWdaRtadr~~l~sl 393 (430)
T KOG0640|consen 354 HRTQAVFNHTEDYVLFP-----------------------------D-----------EASNSLCSWDARTADRVALLSL 393 (430)
T ss_pred hhhhhhhcCccceEEcc-----------------------------c-----------cccCceeeccccchhhhhhccc
Confidence 01122233333333311 0 0246799999999998888888
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2284 GEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2284 gHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
+|++.++.+.-||.+.-+++|+.|-.+++|-
T Consensus 394 gHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 394 GHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 9999999999999999999999999999997
No 63
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=5.1e-20 Score=238.96 Aligned_cols=279 Identities=23% Similarity=0.323 Sum_probs=214.8
Q ss_pred eEEEEEcCCCCEEEEEE--cCCcEEEEecCC------------cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEE
Q 000085 1999 SAVVSITHDKEIITGGH--VDGSIKLLTSDG------------AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILL 2064 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS--~DGsIrVWDl~t------------gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrV 2064 (2342)
+..++++|||..+++|+ .|+.++||+.+. .+.+.+...|.+.|+|+.|++||++||+||.|+.|.|
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i 95 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI 95 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence 55699999999999999 999999998642 2345567789999999999999999999999999999
Q ss_pred EeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 000085 2065 WRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDL 2144 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtI 2144 (2342)
|+.... ... . +.++.++.......+.+..+.+|...|..++|+|++.+++++|.|++|
T Consensus 96 W~~~~~-~~~-----------~----------~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 96 WERAEI-GSG-----------T----------VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSV 153 (942)
T ss_pred eeeccc-CCc-----------c----------cccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceE
Confidence 998741 000 0 011111222222235778899999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC------CCCCeEEEEEccCCCE
Q 000085 2145 LLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP------LSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2145 rIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~------Hs~~ItsLafSPDGk~ 2216 (2342)
.|||.++.+.+..+.+|. +.-++|.|-|++++.-..|+++.+|.+....+...... ....+..+.|||||+|
T Consensus 154 iiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~ 233 (942)
T KOG0973|consen 154 IIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHH 233 (942)
T ss_pred EEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCe
Confidence 999999999999999987 67899999999999999999999999764333322221 3456889999999999
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
|++.-. . . ..-.++.|.+-.+.+.-..+- ||.+++.++.|+|
T Consensus 234 las~nA--~------------n-----------------------~~~~~~~IieR~tWk~~~~Lv-GH~~p~evvrFnP 275 (942)
T KOG0973|consen 234 LASPNA--V------------N-----------------------GGKSTIAIIERGTWKVDKDLV-GHSAPVEVVRFNP 275 (942)
T ss_pred ecchhh--c------------c-----------------------CCcceeEEEecCCceeeeeee-cCCCceEEEEeCh
Confidence 997631 0 0 013467788877777777777 9999999999998
Q ss_pred --------CC-----C----EEEEEeCCCcEEEEeCCCCC-hhhh-----hhhhhccccCCCcc
Q 000085 2297 --------DN-----T----NLLVSTADKQLIVFTDPALS-LKVV-----DQMLKLGWEGDGLS 2337 (2342)
Q Consensus 2297 --------DG-----~----~LaSGSsDGsIrVWDi~sLs-~k~L-----dQLLk~GWegDGLs 2337 (2342)
+| . .+++|+.|++|-||.....+ .-++ .......|.+||+.
T Consensus 276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~ 339 (942)
T KOG0973|consen 276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFS 339 (942)
T ss_pred HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCe
Confidence 11 1 57899999999999964432 1111 23346689999974
No 64
>PTZ00420 coronin; Provisional
Probab=99.85 E-value=3.9e-19 Score=229.86 Aligned_cols=236 Identities=16% Similarity=0.161 Sum_probs=182.6
Q ss_pred EEEcCCcEEEEecCCcccceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccC
Q 000085 2013 GGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI 2091 (2342)
Q Consensus 2013 SGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp 2091 (2342)
+|+.++.|++|+......+..+.+|.+.|++++|+|+ +.+|+|||.|++|+|||+.++.....
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~---------------- 112 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK---------------- 112 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc----------------
Confidence 4678899999998877788889999999999999997 78999999999999999976321000
Q ss_pred CCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEe
Q 000085 2092 GSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGV-VVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLS 2169 (2342)
Q Consensus 2092 DG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~l-LaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfS 2169 (2342)
....++..+.+|...|++++|+|++.. +++++.||+|+|||+++++.+..+..+ .+..++|+
T Consensus 113 ----------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slsws 176 (568)
T PTZ00420 113 ----------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWN 176 (568)
T ss_pred ----------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEEC
Confidence 001345567899999999999999875 579999999999999999887777543 47899999
Q ss_pred cCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEE-----EEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc
Q 000085 2170 SEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGC-----MEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT 2244 (2342)
Q Consensus 2170 pDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~Its-----LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ 2244 (2342)
++|.+++.+..++.+++|++...........|.+.+.+ ..|++++.++++++.+..
T Consensus 177 pdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~------------------- 237 (568)
T PTZ00420 177 IKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN------------------- 237 (568)
T ss_pred CCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC-------------------
Confidence 99999999999999999999855444444557766543 345689999998874332
Q ss_pred cccccccccccCCCCccCCCCeEEEEECCC-CeEEEEEec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2245 EDFDLASDQSVDNNRFDFPSPSICFLDLHT-LKVFHVLKL-GEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2245 iaFspd~~~s~ss~~ias~DGsIrIWDL~T-gk~L~tL~l-gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
.+++|+|||+++ .+++..+.. .+.+.+......++|.++++|+.|+.|++|++..
T Consensus 238 ------------------~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 238 ------------------NMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred ------------------CccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 156899999985 566666542 2223334444456689999999999999999643
No 65
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.85 E-value=2.1e-20 Score=217.76 Aligned_cols=245 Identities=18% Similarity=0.179 Sum_probs=208.3
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccc
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRR 2107 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~ 2107 (2342)
+..+.+.||.++|.|+++.|...+++|||.|++++|||+.++....+ ..++...+..+++|+-..++.+++.|+. ..|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt-ltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT-LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe-ecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 34567899999999999999999999999999999999999865444 3567778888999999999999988875 447
Q ss_pred cc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCe
Q 000085 2108 RI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHT 2183 (2342)
Q Consensus 2108 ~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGs 2183 (2342)
++ .+.+..+.||-..|.|++.+|..+.++||+.|.+++|||+++...+..+.+|. +..+.+.+-...++.++.|++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 76 45678899999999999999999999999999999999999999999999986 556666665666777888999
Q ss_pred EEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCC
Q 000085 2184 LSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2184 I~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
|++|++...........|...|.+++.+|....+++++.
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~----------------------------------------- 339 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP----------------------------------------- 339 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-----------------------------------------
Confidence 999998644444444559999999999999988887752
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
..|+-|++..|..++.+. +|.+-|++++.+.|| .+++|++.|.+.+||-...
T Consensus 340 -dnik~w~~p~g~f~~nls-gh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 340 -DNIKQWKLPEGEFLQNLS-GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred -ccceeccCCccchhhccc-cccceeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence 247889999999899877 999999999999888 5889999999999996544
No 66
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.2e-19 Score=227.84 Aligned_cols=335 Identities=16% Similarity=0.144 Sum_probs=252.4
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCC
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt 2038 (2342)
.+.++-..+.|++|+-.-+.. -.....|.+.++. ++|+|++.++++|+.|..|+||++.+.+++.++.||-
T Consensus 23 wILtslHsG~IQlWDYRM~tl------i~rFdeHdGpVRg---v~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl 93 (1202)
T KOG0292|consen 23 WILTSLHSGVIQLWDYRMGTL------IDRFDEHDGPVRG---VDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL 93 (1202)
T ss_pred EEEEeecCceeeeehhhhhhH------HhhhhccCCccce---eeecCCCCeEEecCCccEEEEEecccceehhhhcccc
Confidence 345555667999998654222 2233446666665 9999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccccCC------
Q 000085 2039 APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG------ 2111 (2342)
Q Consensus 2039 ~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~------ 2111 (2342)
+-|..+.|++...+++|+|.|.||+||++.+..++... .+|...|.|..|+|....+++++-|.+ +.|++.+
T Consensus 94 DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl-tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~ 172 (1202)
T KOG0292|consen 94 DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL-TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNK 172 (1202)
T ss_pred ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCC
Confidence 99999999999999999999999999999998776544 678889999999999999988888865 4465410
Q ss_pred -------------------------ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe--EEEEEecCC--
Q 000085 2112 -------------------------PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR--LIRRLVGVD-- 2162 (2342)
Q Consensus 2112 -------------------------~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk--lIrsL~gh~-- 2162 (2342)
..+.+.||+..|+-++|+|...+++||+.|..|++|-+...+ .+-+..+|.
T Consensus 173 ~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nn 252 (1202)
T KOG0292|consen 173 APGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNN 252 (1202)
T ss_pred CCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCC
Confidence 135778999999999999999999999999999999986543 355666764
Q ss_pred cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCC
Q 000085 2163 AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS 2242 (2342)
Q Consensus 2163 vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~ 2242 (2342)
+.++-|+|...+++.++.|+.|++|+++.+.-...+....++.++++.+|..+.+++|..+|. .++.+... .
T Consensus 253 Vssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm-------~VFkleRE-r 324 (1202)
T KOG0292|consen 253 VSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGM-------IVFKLERE-R 324 (1202)
T ss_pred cceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCce-------EEEEEccc-C
Confidence 788999999999999999999999999754433333335689999999999999999875444 22333211 0
Q ss_pred CccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC----CCeEEEEEecCCCEEEEE-e-CCCcEEEEeCC
Q 000085 2243 GTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG----QDITALALNKDNTNLLVS-T-ADKQLIVFTDP 2316 (2342)
Q Consensus 2243 ~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs----~~ItsLafSPDG~~LaSG-S-sDGsIrVWDi~ 2316 (2342)
...+.+. ...+-+.|..|+.+|+.+.+-.......+. .++.++.++|....++.+ . ..|..-++.++
T Consensus 325 pa~~v~~-------n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 325 PAYAVNG-------NGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIP 397 (1202)
T ss_pred ceEEEcC-------CEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEec
Confidence 1111111 111223478899999988655544443343 578999999976554444 3 34555566655
Q ss_pred CC
Q 000085 2317 AL 2318 (2342)
Q Consensus 2317 sL 2318 (2342)
.-
T Consensus 398 k~ 399 (1202)
T KOG0292|consen 398 KD 399 (1202)
T ss_pred Cc
Confidence 44
No 67
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.7e-19 Score=225.62 Aligned_cols=263 Identities=18% Similarity=0.226 Sum_probs=216.3
Q ss_pred cCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc-CCCCe
Q 000085 1963 PASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG-HCAPV 2041 (2342)
Q Consensus 1963 sSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G-Ht~~V 2041 (2342)
.+.+..+.+|+..++.... ...+ +...++++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|
T Consensus 193 Valg~~vylW~~~s~~v~~------l~~~---~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rv 263 (484)
T KOG0305|consen 193 VALGQSVYLWSASSGSVTE------LCSF---GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRV 263 (484)
T ss_pred EEecceEEEEecCCCceEE------eEec---CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCcee
Confidence 3445678889876632111 1111 245577799999999999999999999999999999999998 99999
Q ss_pred EEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCC
Q 000085 2042 TCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHR 2121 (2342)
Q Consensus 2042 tcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~ 2121 (2342)
-|++|. +..+.+|+.|+.|..+|++..... ..++.+|..
T Consensus 264 g~laW~--~~~lssGsr~~~I~~~dvR~~~~~---------------------------------------~~~~~~H~q 302 (484)
T KOG0305|consen 264 GSLAWN--SSVLSSGSRDGKILNHDVRISQHV---------------------------------------VSTLQGHRQ 302 (484)
T ss_pred EEEecc--CceEEEecCCCcEEEEEEecchhh---------------------------------------hhhhhcccc
Confidence 999998 778999999999999999874321 113688999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCC-cEEEEE--eCCCeEEEEEeC-Cceee
Q 000085 2122 EILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEG-VIMTWN--KLQHTLSSFTLN-GVLVA 2195 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG-~IlVwd--ssdGsI~I~dln-G~~L~ 2195 (2342)
.|..+.|++|+.++++|+.|+.+.|||......+..+..|. +.+++|+|-. .+++.+ ..|++|++|+.+ |..+.
T Consensus 303 eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~ 382 (484)
T KOG0305|consen 303 EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID 382 (484)
T ss_pred eeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec
Confidence 99999999999999999999999999998888888888875 7889999854 455555 467899999987 44444
Q ss_pred eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2196 RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2196 s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
... ....|.+|.|++..+-++++. | ..++.|.||+..+.
T Consensus 383 ~vd--tgsQVcsL~Wsk~~kEi~sth--G-------------------------------------~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 383 SVD--TGSQVCSLIWSKKYKELLSTH--G-------------------------------------YSENQITLWKYPSM 421 (484)
T ss_pred ccc--cCCceeeEEEcCCCCEEEEec--C-------------------------------------CCCCcEEEEecccc
Confidence 332 568999999999998888663 1 12568999999999
Q ss_pred eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2276 KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2276 k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
+.+..+. +|...|..++++|||..+++|+.|.++++|+.-.
T Consensus 422 ~~~~~l~-gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 422 KLVAELL-GHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ceeeeec-CCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 9999998 9999999999999999999999999999999543
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.7e-19 Score=218.19 Aligned_cols=232 Identities=19% Similarity=0.310 Sum_probs=201.0
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
+.+++|-.||+++++|...|.|+|||..+...++.+.+|+.+|..+.|+|+ +..+++|+.|+.+++||+.+..
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~------ 144 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY------ 144 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE------
Confidence 456899999999999999999999998877788999999999999999996 5678899999999999998842
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCC-eEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRG-RLI 2155 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTG-klI 2155 (2342)
....+.+|++.|.|.+|+|.. .+++|||.||+|++||+++. ..+
T Consensus 145 ----------------------------------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 145 ----------------------------------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV 190 (487)
T ss_pred ----------------------------------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee
Confidence 133678999999999999964 58899999999999999987 677
Q ss_pred EEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccc
Q 000085 2156 RRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233 (2342)
Q Consensus 2156 rsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~ 2233 (2342)
.++.. +.+..+.+-|.|.+++... ...+++|++. |..+......|...|+|+.+..++..|++|+.
T Consensus 191 ~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL----------- 258 (487)
T KOG0310|consen 191 VELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL----------- 258 (487)
T ss_pred EEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc-----------
Confidence 77764 5688899999988777653 5689999997 66665555569999999999999999998863
Q ss_pred ccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVF 2313 (2342)
Q Consensus 2234 Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVW 2313 (2342)
|+.++|||+.+.+.++.+. ..++|.+++.+||++.++.|..||.+.+-
T Consensus 259 ------------------------------D~~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 259 ------------------------------DRHVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ------------------------------ccceEEEEccceEEEEeee--cccceeeEEecCCCceEEEecccceeeee
Confidence 7889999999999999887 67899999999999999999999998887
Q ss_pred e
Q 000085 2314 T 2314 (2342)
Q Consensus 2314 D 2314 (2342)
+
T Consensus 307 r 307 (487)
T KOG0310|consen 307 R 307 (487)
T ss_pred h
Confidence 4
No 69
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=8.2e-19 Score=199.86 Aligned_cols=232 Identities=14% Similarity=0.197 Sum_probs=192.5
Q ss_pred eeEEEEEcCC-CCEEEEEEcCCcEEEEecCCc---ccceec-ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc
Q 000085 1998 SSAVVSITHD-KEIITGGHVDGSIKLLTSDGA---KTLETA-SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1998 Svt~VafSpD-GklLASGS~DGsIrVWDl~tg---kll~tL-~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
.+..++|+|- |.+||+|+.|..||+|+...+ .+...+ .+|+..|..++|+|.|++|++||.|.|+.||.-..+.
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e- 94 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE- 94 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc-
Confidence 3456999999 899999999999999998853 334444 4799999999999999999999999999999765431
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
.+++.++.||.++|.|++|+++|.+|++|+.|..|-||.+..+
T Consensus 95 -------------------------------------fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 95 -------------------------------------FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred -------------------------------------eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 1456789999999999999999999999999999999999754
Q ss_pred ---eEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeC-C--ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2153 ---RLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLN-G--VLVARAKLPLSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2153 ---klIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dln-G--~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
.++..+..|. +..+.|+|.-.+++..+.+.+|++|.-. + -.......+|...|.+++|++.|..|++++.
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd-- 215 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD-- 215 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC--
Confidence 4677777764 7889999999999999999999999865 2 2233344458889999999999999998863
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS 2304 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG 2304 (2342)
|++++||-.. ..+...|...+..+.|. ...|+++
T Consensus 216 ---------------------------------------D~tv~Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ 249 (312)
T KOG0645|consen 216 ---------------------------------------DGTVSIWRLY-----TDLSGMHSRALYDVPWD--NGVIASG 249 (312)
T ss_pred ---------------------------------------CcceEeeeec-----cCcchhcccceEeeeec--ccceEec
Confidence 6778999765 33344678899999998 4469999
Q ss_pred eCCCcEEEEeC
Q 000085 2305 TADKQLIVFTD 2315 (2342)
Q Consensus 2305 SsDGsIrVWDi 2315 (2342)
+.|+.|++|..
T Consensus 250 ggD~~i~lf~~ 260 (312)
T KOG0645|consen 250 GGDDAIRLFKE 260 (312)
T ss_pred cCCCEEEEEEe
Confidence 99999999984
No 70
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.84 E-value=3.6e-19 Score=224.36 Aligned_cols=344 Identities=16% Similarity=0.159 Sum_probs=260.9
Q ss_pred EEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCC
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCA 2039 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~ 2039 (2342)
++-++.++.+++|+..++....++ . .....++++.-+|--.++|.|..+|+|.++++..++.+.+++.-.+
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v~~f--~-------~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g 245 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVVYTF--Q-------EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWG 245 (910)
T ss_pred EEEeecCCcEEEEEeccCcEEEEe--c-------ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcccc
Confidence 345677789999998774332221 1 1123456688888888999999999999999999999999985569
Q ss_pred CeEEEEecCCCCE-EEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccc-ccc------CC
Q 000085 2040 PVTCLALSSDSNF-LVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR-RRI------EG 2111 (2342)
Q Consensus 2040 ~VtcLAfSPDG~~-LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i------~~ 2111 (2342)
.|+.++|..||+. +++|+..|.+.+||++...........|.+++....+-+....+.+.+.|+... |-. .+
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR 325 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR 325 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcch
Confidence 9999999999975 667777899999999997766666667788888888888888888877775533 322 24
Q ss_pred ceEEecCCCCCeEEEEEe-cCCCEEEEEeCCCcEEEEECCC-------Ce---------------------EEEE-----
Q 000085 2112 PIHVLRGHHREILCCCVS-SDLGVVVSCSDSSDLLLHSIRR-------GR---------------------LIRR----- 2157 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafS-PDg~lLaSGS~DGtIrIWDLrT-------Gk---------------------lIrs----- 2157 (2342)
.+..-.||..+..|+.|. .+|..+.+++.|++.+.+++.. ++ .+..
T Consensus 326 ~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~ 405 (910)
T KOG1539|consen 326 LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN 405 (910)
T ss_pred heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence 466678999999999998 6788999999999888776531 00 0000
Q ss_pred ---------------------------------EecC-------CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee
Q 000085 2158 ---------------------------------LVGV-------DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2158 ---------------------------------L~gh-------~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~ 2197 (2342)
+... .+.+++.++.|++.+.+...|.|.+|++........
T Consensus 406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~s 485 (910)
T KOG1539|consen 406 AREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKS 485 (910)
T ss_pred chhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecc
Confidence 0000 136788999999999999999999999986555444
Q ss_pred c---CCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc---cccccc---cccccCCCCccCCCCeEE
Q 000085 2198 K---LPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT---EDFDLA---SDQSVDNNRFDFPSPSIC 2268 (2342)
Q Consensus 2198 ~---~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~---iaFspd---~~~s~ss~~ias~DGsIr 2268 (2342)
. ..|.++|++++...-++.+++++.+|- ..+|++....... ...+.. .........++..|-.|.
T Consensus 486 f~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi------lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 486 FGDSPAHKGEVTGLAVDGTNRLLVSAGADGI------LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred cccCccccCceeEEEecCCCceEEEccCcce------EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEE
Confidence 4 249999999999999999999998887 5567766654100 011111 111222233344788999
Q ss_pred EEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2269 FLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2269 IWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
++|+.+.+.+..+. +|+..|++++|||||++|++++.|++|++||+++..
T Consensus 560 vvD~~t~kvvR~f~-gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 560 VVDVVTRKVVREFW-GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred EEEchhhhhhHHhh-ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 99999999999999 999999999999999999999999999999988763
No 71
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.84 E-value=1.7e-19 Score=207.71 Aligned_cols=261 Identities=18% Similarity=0.183 Sum_probs=215.1
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
|+|..+++++.|..|-+|+... .....| .+.+|++++.. +.|..|++.|++++.|.+|+.||.++|+.+..+
T Consensus 57 P~gs~~aSgG~Dr~I~LWnv~g-dceN~~----~lkgHsgAVM~---l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~ 128 (338)
T KOG0265|consen 57 PDGSCFASGGSDRAIVLWNVYG-DCENFW----VLKGHSGAVME---LHGMRDGSHILSCGTDKTVRGWDAETGKRIRKH 128 (338)
T ss_pred CCCCeEeecCCcceEEEEeccc-ccccee----eeccccceeEe---eeeccCCCEEEEecCCceEEEEecccceeeehh
Confidence 5678899999999999998543 333334 23456666544 899999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC-cccccc--C
Q 000085 2035 SGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-SRRRRI--E 2110 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i--~ 2110 (2342)
++|.+-|..+.-+.-| ..+.||+.|+|++|||+++...++++ .....+.++.|..++..+.+++-|+ +..|+. .
T Consensus 129 k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~--~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~ 206 (338)
T KOG0265|consen 129 KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF--ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN 206 (338)
T ss_pred ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc--ccceeEEEEEecccccceeeccccCceeeeccccC
Confidence 9999999999855444 46778999999999999976555443 2344577888888888888877764 455766 4
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC----CeEEEEEecCC------cEEEEEecCCcEEEEEeC
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR----GRLIRRLVGVD------AHAVSLSSEGVIMTWNKL 2180 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT----GklIrsL~gh~------vssLSfSpDG~IlVwdss 2180 (2342)
...+++.||.+.|+.+..+++|.++.+-+.|.++++||++- .+++..+.++. ...++|||+++.+-.+..
T Consensus 207 d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~ 286 (338)
T KOG0265|consen 207 DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSA 286 (338)
T ss_pred cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccc
Confidence 56899999999999999999999999999999999999984 35677787753 346789999999999999
Q ss_pred CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2181 QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2181 dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
+..+++|+..+..+.....+|.+.|++++|+|...++.+++.|..
T Consensus 287 dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~ 331 (338)
T KOG0265|consen 287 DRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKT 331 (338)
T ss_pred cceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence 999999999887777777779999999999999999998875543
No 72
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=4.9e-20 Score=215.50 Aligned_cols=279 Identities=13% Similarity=0.195 Sum_probs=213.3
Q ss_pred cceeccccCcceeEEEEEcCCC-CEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEE
Q 000085 1987 RALAFASSGIRSSAVVSITHDK-EIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065 (2342)
Q Consensus 1987 ~sls~hs~gI~Svt~VafSpDG-klLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVW 2065 (2342)
..+.+|..|+ .|++=+|.. ..+++|+.||.|+|||+....++.++..|.+.|..|++.. ..++|++.|.+|+.|
T Consensus 60 ~~L~gHrdGV---~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 60 GSLDGHRDGV---SCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred hhcccccccc---chhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence 3444555554 458888887 6899999999999999999999999999999999999985 789999999999999
Q ss_pred eccCCccccccccCCCCCCccccccCCCCCceeecCCCcccccc--CCceEEecCCCCCeEEEEEecC-CCEEEEEeCCC
Q 000085 2066 RIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRI--EGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSS 2142 (2342)
Q Consensus 2066 Dl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i--~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DG 2142 (2342)
.+... ..+++ .....+..+.-+..+..+++++. .+..|+. ..|+..+.--.+.|.++.|+|. ...|++|+.|+
T Consensus 135 k~~~~-p~~ti--lg~s~~~gIdh~~~~~~FaTcGe-~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 135 KIDGP-PLHTI--LGKSVYLGIDHHRKNSVFATCGE-QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred eccCC-cceee--eccccccccccccccccccccCc-eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 98763 33332 11222333333333444444443 3445554 4678888888889999999996 45678888999
Q ss_pred cEEEEECCCCeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCc-eeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2143 DLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV-LVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2143 tIrIWDLrTGklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~-~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
.|.+||++++..++.+.. -....+||+|++-.++.+..|..++.|++..- ........|...|.+++|||.|+-+++|
T Consensus 211 sIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred ceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence 999999999998876543 34678999998888888899999999997531 1112233488999999999999999988
Q ss_pred eCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCE
Q 000085 2221 VNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTN 2300 (2342)
Q Consensus 2221 S~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~ 2300 (2342)
|. |.+|+||.++.+.....+....-..|.|+.||.|.++
T Consensus 291 sy-----------------------------------------DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 291 SY-----------------------------------------DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKY 329 (433)
T ss_pred cc-----------------------------------------cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccE
Confidence 73 6779999988765433332222357999999999999
Q ss_pred EEEEeCCCcEEEEeC
Q 000085 2301 LLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2301 LaSGSsDGsIrVWDi 2315 (2342)
+++|+.|+.|++|..
T Consensus 330 i~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 330 IISGSDDGNVRLWKA 344 (433)
T ss_pred EEecCCCcceeeeec
Confidence 999999999999984
No 73
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.6e-18 Score=190.13 Aligned_cols=276 Identities=18% Similarity=0.193 Sum_probs=215.5
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecC------Ccc-----c----ceecccCCCCeEEEEecCCCCEEEEEeCCCce
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSD------GAK-----T----LETASGHCAPVTCLALSSDSNFLVTGSQDTTI 2062 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~------tgk-----l----l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTV 2062 (2342)
.+.+++|+|.|.+.+.|+...++||..+. .+. + .+.-+.|.+.|.|.+|+|+|++|+|||.|.+|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 34569999999999999999999997542 111 1 12335689999999999999999999999999
Q ss_pred EEEeccCCcccccc----ccCCCCCCccccccC----CCCCceeecCCCccc----cccCCceEEecCCCCCeEEEEEec
Q 000085 2063 LLWRIHRAFTSRTG----TIEPSSGMGTPGNSI----GSSTPANASADKSRR----RRIEGPIHVLRGHHREILCCCVSS 2130 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~----~~~~~~~V~svs~Sp----DG~~Las~s~D~s~~----~~i~~~l~~L~GHs~~Vt~VafSP 2130 (2342)
++..++...+..+. ..-|.+.+..++|-. .|..++++....... ...+...+.+.||++.|.++ ++-
T Consensus 114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-ysw 192 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSW 192 (350)
T ss_pred EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEe
Confidence 99988765443322 334556666666643 234455555443322 23367789999999999887 456
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEec---------CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCC
Q 000085 2131 DLGVVVSCSDSSDLLLHSIRRGRLIRRLVG---------VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPL 2201 (2342)
Q Consensus 2131 Dg~lLaSGS~DGtIrIWDLrTGklIrsL~g---------h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~H 2201 (2342)
++-++++|+.|.+|++||++-..++.++.. ..+..+++.|.|++++.+..+....+|++.|....+...+|
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph 272 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH 272 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC
Confidence 789999999999999999999999888753 12678999999999999999999999999988877778889
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC----eE
Q 000085 2202 SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL----KV 2277 (2342)
Q Consensus 2202 s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg----k~ 2277 (2342)
...|.|+.|+|...|+++++. |..|++-|+... -+
T Consensus 273 sadir~vrfsp~a~yllt~sy-----------------------------------------d~~ikltdlqgdla~el~ 311 (350)
T KOG0641|consen 273 SADIRCVRFSPGAHYLLTCSY-----------------------------------------DMKIKLTDLQGDLAHELP 311 (350)
T ss_pred ccceeEEEeCCCceEEEEecc-----------------------------------------cceEEEeecccchhhcCc
Confidence 999999999999999999974 445666666421 12
Q ss_pred EEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2278 FHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+.++. .|...+..+.|+|..-.+++.+.|.++.+|..+
T Consensus 312 ~~vv~-ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 312 IMVVA-EHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEE-eccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 23333 688888899999999889999999999999854
No 74
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.5e-18 Score=200.30 Aligned_cols=239 Identities=18% Similarity=0.198 Sum_probs=204.1
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC--CCceEEEeccCCcccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ--DTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~--DGTVrVWDl~tg~~i~t~ 2076 (2342)
++++.|+.+|.++++++.|.+++|||..+|+.+.++..+...|..++|....+.++.+|. |.+|+.-++.+.
T Consensus 17 i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN------ 90 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN------ 90 (311)
T ss_pred eeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC------
Confidence 556999999999999999999999999999999999999889999999888888887776 889999988874
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
+.++.+.||...|+.++.+|-++.++|++.|++|++||++..++..
T Consensus 91 ----------------------------------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg 136 (311)
T KOG1446|consen 91 ----------------------------------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG 136 (311)
T ss_pred ----------------------------------ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce
Confidence 3466789999999999999999999999999999999999988888
Q ss_pred EEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeC---CceeeeecCC--CCCCeEEEEEccCCCEEEEEeCCCCCCCCCc
Q 000085 2157 RLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN---GVLVARAKLP--LSGSIGCMEISLDGHSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2157 sL~gh~vssLSfSpDG~IlVwdssdGsI~I~dln---G~~L~s~~~~--Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~ 2231 (2342)
.+......+++++|+|-+++.+.....|.+|++. ..+....... .....+.|.|||||++++.++.
T Consensus 137 ~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~--------- 207 (311)
T KOG1446|consen 137 LLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN--------- 207 (311)
T ss_pred EEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC---------
Confidence 8887777899999999999999888899999985 2233333222 4678899999999999998862
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCC---eEEEEEecCCCEEEEEeCCC
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQD---ITALALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~---ItsLafSPDG~~LaSGSsDG 2308 (2342)
.+.+++.|.-+|..+.++. ++... --+.+|+||++++++|+.||
T Consensus 208 --------------------------------~s~~~~lDAf~G~~~~tfs-~~~~~~~~~~~a~ftPds~Fvl~gs~dg 254 (311)
T KOG1446|consen 208 --------------------------------ASFIYLLDAFDGTVKSTFS-GYPNAGNLPLSATFTPDSKFVLSGSDDG 254 (311)
T ss_pred --------------------------------CCcEEEEEccCCcEeeeEe-eccCCCCcceeEEECCCCcEEEEecCCC
Confidence 4568899999999888887 44322 25778999999999999999
Q ss_pred cEEEEeCCCCC
Q 000085 2309 QLIVFTDPALS 2319 (2342)
Q Consensus 2309 sIrVWDi~sLs 2319 (2342)
+|.+|+.....
T Consensus 255 ~i~vw~~~tg~ 265 (311)
T KOG1446|consen 255 TIHVWNLETGK 265 (311)
T ss_pred cEEEEEcCCCc
Confidence 99999975543
No 75
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.83 E-value=3e-19 Score=215.43 Aligned_cols=292 Identities=14% Similarity=0.184 Sum_probs=220.1
Q ss_pred ccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc----cceec-ccCCCCeEEEEecCCCCEEEEEeCCCceEEEec
Q 000085 1993 SSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK----TLETA-SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1993 s~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk----ll~tL-~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl 2067 (2342)
.++...|.++++.|.|..|++|+.|.+|++||+.... ..+.+ ..-+..|.++.|++.|..|+..+.....+|+|-
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR 243 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR 243 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence 3456678889999999999999999999999987532 22222 223457999999999999999998899999997
Q ss_pred cCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEE
Q 000085 2068 HRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrI 2146 (2342)
....... ++...+++ ..+..-+||...++|.+|+|+. ..++|++.||+++|
T Consensus 244 dG~~~~e--------------~~KGDQYI--------------~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 244 DGFEIVE--------------FSKGDQYI--------------RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred CCceeee--------------eeccchhh--------------hhhhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence 6532111 11101111 1123458999999999999974 57899999999999
Q ss_pred EECCCCe-EEEEEec-------CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee---eecCCCCC--CeEEEEEccC
Q 000085 2147 HSIRRGR-LIRRLVG-------VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA---RAKLPLSG--SIGCMEISLD 2213 (2342)
Q Consensus 2147 WDLrTGk-lIrsL~g-------h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~---s~~~~Hs~--~ItsLafSPD 2213 (2342)
||+...+ .++.+.. ..++.++|++||..++.++.+|.|++|+..+..+. .....|.. .|+||.||+|
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d 375 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD 375 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence 9997643 3333432 12688999999999999999999999997543222 22233777 9999999999
Q ss_pred CCEEEEEeCCCCCCCCCcccccccCCCC--------------CCccccccccccccCCCCc--cCCCCeEEEEECCCCeE
Q 000085 2214 GHSALIGVNSSSTNNGSYDNIQGLNSKQ--------------SGTEDFDLASDQSVDNNRF--DFPSPSICFLDLHTLKV 2277 (2342)
Q Consensus 2214 Gk~LaSGS~DGs~d~~i~d~Lw~l~~~~--------------~~~iaFspd~~~s~ss~~i--as~DGsIrIWDL~Tgk~ 2277 (2342)
|++|++-+.|.+ .++|++.... .+-++|+|+......+... ....|.+++||..+.+.
T Consensus 376 g~~LlSRg~D~t------LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 376 GNYLLSRGFDDT------LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT 449 (641)
T ss_pred cchhhhccCCCc------eeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence 999999888887 4566665533 3345788876554433332 34577999999999999
Q ss_pred EEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2278 FHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
++.+. -.+..|..+.|+|--++|++|+.||.++||-.++.+
T Consensus 450 v~ki~-i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 450 VYKID-ISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNES 490 (641)
T ss_pred EEEec-CCCceEEEEeecchhhheeeecCCCceEEEECcccc
Confidence 99998 457789999999999999999999999999877665
No 76
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=9.4e-19 Score=215.48 Aligned_cols=239 Identities=15% Similarity=0.296 Sum_probs=200.7
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCC---CCEEEEEeCCCceEEEeccCCcccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD---SNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPD---G~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
.+.+++++|+|+.||+|..-|+++||++..-+....+..|...|.|+.|+.. .++|+++|+|+.|.|+|+....
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny--- 537 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY--- 537 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc---
Confidence 4567999999999999999999999999998888899999999999999852 4789999999999999997631
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCC-
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL--GVVVSCSDSSDLLLHSIRR- 2151 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg--~lLaSGS~DGtIrIWDLrT- 2151 (2342)
.+++++.+|...|++|.|...| ..+++++.|..|.+-..+.
T Consensus 538 ------------------------------------~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~ 581 (1080)
T KOG1408|consen 538 ------------------------------------DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA 581 (1080)
T ss_pred ------------------------------------chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccc
Confidence 3466789999999999998876 6789999998887543332
Q ss_pred --CeEE----EEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC---CCCCeEEEEEccCCCEEEEEeC
Q 000085 2152 --GRLI----RRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP---LSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2152 --GklI----rsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~---Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
|... +++.....+.+.+.|..++++....|..|++|++........+.+ |.+....+...|.|.|+++..
T Consensus 582 ~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc- 660 (1080)
T KOG1408|consen 582 SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC- 660 (1080)
T ss_pred cCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee-
Confidence 2211 112222367899999999999999999999999974443333333 778899999999999999774
Q ss_pred CCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEE
Q 000085 2223 SSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLL 2302 (2342)
Q Consensus 2223 DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~La 2302 (2342)
+ |.++.|+|..+++++.... ||+..|+.+.|.+|.++|+
T Consensus 661 --s--------------------------------------dktl~~~Df~sgEcvA~m~-GHsE~VTG~kF~nDCkHlI 699 (1080)
T KOG1408|consen 661 --S--------------------------------------DKTLCFVDFVSGECVAQMT-GHSEAVTGVKFLNDCKHLI 699 (1080)
T ss_pred --c--------------------------------------CCceEEEEeccchhhhhhc-Ccchheeeeeecccchhhe
Confidence 2 7889999999999999999 9999999999999999999
Q ss_pred EEeCCCcEEEEeCCC
Q 000085 2303 VSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2303 SGSsDGsIrVWDi~s 2317 (2342)
+.+.||.|.||.++.
T Consensus 700 SvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 700 SVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecCCceEEEEECch
Confidence 999999999999764
No 77
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.82 E-value=1.1e-18 Score=216.91 Aligned_cols=263 Identities=17% Similarity=0.252 Sum_probs=207.7
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEE-EEEcC-CCCEEEEEEcCCcEEEEecCCcccc
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAV-VSITH-DKEIITGGHVDGSIKLLTSDGAKTL 2031 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~-VafSp-DGklLASGS~DGsIrVWDl~tgkll 2031 (2342)
+.++..+++++.|+++++|.... .+|.-...+..+. ..+.+ +++.+ ++-.+++|+.|++|.+|...+..++
T Consensus 22 ~~~~~~i~s~sRd~t~~vw~~~~----~~~l~~~~~~~~~---g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~ 94 (745)
T KOG0301|consen 22 VTDGVCIISGSRDGTVKVWAKKG----KQYLETHAFEGPK---GFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL 94 (745)
T ss_pred ecCCeEEeecCCCCceeeeeccC----cccccceecccCc---ceeeccceeccccCcceEeecccceEEEEecCCCCch
Confidence 44556688899999999998544 2332111122222 22222 66664 5557999999999999999999999
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCC
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG 2111 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~ 2111 (2342)
.++.||...|+|++...++. ++|||+|.|++||.....
T Consensus 95 ~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l----------------------------------------- 132 (745)
T KOG0301|consen 95 YTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL----------------------------------------- 132 (745)
T ss_pred hhhhccccceeeeecCCcCc-eEecccccceEEecchhh-----------------------------------------
Confidence 99999999999999887777 999999999999987552
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
...+.+|+..|+++++-|++ .++|||.|.+|++|.- ++++++|.+|. ++.+++-+++.++- ...+|.|+.|++
T Consensus 133 -~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flS-csNDg~Ir~w~~ 207 (745)
T KOG0301|consen 133 -VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLS-CSNDGSIRLWDL 207 (745)
T ss_pred -hcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEe-ecCCceEEEEec
Confidence 23368999999999998888 7899999999999984 88999999986 67888888776544 457888888988
Q ss_pred CCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEE
Q 000085 2190 NGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICF 2269 (2342)
Q Consensus 2190 nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrI 2269 (2342)
.|..+.+. .+|..-|+++....++..+++++ .|++++|
T Consensus 208 ~ge~l~~~-~ghtn~vYsis~~~~~~~Ivs~g-----------------------------------------EDrtlri 245 (745)
T KOG0301|consen 208 DGEVLLEM-HGHTNFVYSISMALSDGLIVSTG-----------------------------------------EDRTLRI 245 (745)
T ss_pred cCceeeee-eccceEEEEEEecCCCCeEEEec-----------------------------------------CCceEEE
Confidence 87666543 45999999999888888888775 2788999
Q ss_pred EECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2270 LDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2270 WDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
|+.. ++.+.+. .-...|+++.+-++|. |++|+.||.||||...
T Consensus 246 W~~~--e~~q~I~-lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 246 WKKD--ECVQVIT-LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred eecC--ceEEEEe-cCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 9987 6777776 2344799999988887 8899999999999965
No 78
>PTZ00420 coronin; Provisional
Probab=99.82 E-value=5.1e-18 Score=219.60 Aligned_cols=245 Identities=9% Similarity=0.054 Sum_probs=176.3
Q ss_pred cCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC-CCEEEEEEcCCcEEEEecCCcc--------ccee
Q 000085 1963 PASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD-KEIITGGHVDGSIKLLTSDGAK--------TLET 2033 (2342)
Q Consensus 1963 sSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD-GklLASGS~DGsIrVWDl~tgk--------ll~t 2033 (2342)
++.++.+++|+.... .....+..|. ..|.+++|+|+ +.+|++|+.|++|+|||+.++. .+..
T Consensus 50 GG~~gvI~L~~~~r~------~~v~~L~gH~---~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~ 120 (568)
T PTZ00420 50 GGLIGAIRLENQMRK------PPVIKLKGHT---SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120 (568)
T ss_pred CCceeEEEeeecCCC------ceEEEEcCCC---CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE
Confidence 445678899974331 1112233343 45667999997 7899999999999999997642 2346
Q ss_pred cccCCCCeEEEEecCCCCE-EEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2034 ASGHCAPVTCLALSSDSNF-LVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~-LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
+.+|...|++++|+|++.. |+||+.|++|+|||+.++..
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~---------------------------------------- 160 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR---------------------------------------- 160 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE----------------------------------------
Confidence 7899999999999999875 57999999999999987521
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-------EEEEEecCCcEEEEEeCC----
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDA-------HAVSLSSEGVIMTWNKLQ---- 2181 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~v-------ssLSfSpDG~IlVwdssd---- 2181 (2342)
...+. |...|.+++|+++|.++++++.|+.|+|||+++++.+.++.+|.. ....+++++..++....+
T Consensus 161 ~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~ 239 (568)
T PTZ00420 161 AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNM 239 (568)
T ss_pred EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCc
Confidence 11222 456799999999999999999999999999999999999988752 122356888877776544
Q ss_pred CeEEEEEeC--CceeeeecCC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCC
Q 000085 2182 HTLSSFTLN--GVLVARAKLP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNN 2258 (2342)
Q Consensus 2182 GsI~I~dln--G~~L~s~~~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~ 2258 (2342)
+.+++|++. +..+...... +.+.+......++|.++++|+
T Consensus 240 R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk------------------------------------- 282 (568)
T PTZ00420 240 REMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK------------------------------------- 282 (568)
T ss_pred cEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE-------------------------------------
Confidence 379999987 3334332221 233333444455688888775
Q ss_pred CccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC
Q 000085 2259 RFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN 2298 (2342)
Q Consensus 2259 ~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG 2298 (2342)
.|+.|++|++..+.....-...+..++.+++|.|..
T Consensus 283 ----GD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 283 ----GDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ----CCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 278899999987653222222356788999999965
No 79
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.6e-18 Score=198.93 Aligned_cols=237 Identities=19% Similarity=0.264 Sum_probs=193.1
Q ss_pred cCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCC--EEEEEeCCCceEEEeccCCc
Q 000085 1994 SGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSN--FLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 1994 ~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~--~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
.+..+++++++ +|.++|+|+.|-+|+|||..+...+..+-.|.+.|+|+.|.++-. .|++|+.||.|.+|+....
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W- 117 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW- 117 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-
Confidence 34555666666 589999999999999999999999999999999999999998765 9999999999999998763
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
..+..+++|.+.|+.++++|.+++.++.+.|+.++.||+-+
T Consensus 118 ---------------------------------------~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 118 ---------------------------------------ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred ---------------------------------------EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 34667899999999999999999999999999999999999
Q ss_pred CeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCC
Q 000085 2152 GRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGS 2230 (2342)
Q Consensus 2152 GklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i 2230 (2342)
|+.-..+.- +..+.+.|+|.|..++...++ .|-+|.+....+.... .....+.|+.|- ++..+++|+.
T Consensus 159 Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i-~~~~r~l~~~~l-~~~~L~vG~d-------- 227 (362)
T KOG0294|consen 159 GRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREI-ENPKRILCATFL-DGSELLVGGD-------- 227 (362)
T ss_pred CccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhh-hccccceeeeec-CCceEEEecC--------
Confidence 887665553 456789999999977766554 5678887643222111 123457777775 4566666652
Q ss_pred cccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEE--ecCCCEEEEEeCCC
Q 000085 2231 YDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALAL--NKDNTNLLVSTADK 2308 (2342)
Q Consensus 2231 ~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLaf--SPDG~~LaSGSsDG 2308 (2342)
|+.|.+||..++.+...+. +|...|.++.+ .|++.+|++++.||
T Consensus 228 ---------------------------------~~~i~~~D~ds~~~~~~~~-AH~~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 228 ---------------------------------NEWISLKDTDSDTPLTEFL-AHENRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred ---------------------------------CceEEEeccCCCccceeee-cchhheeeeEEEecCCceEEEEeccCc
Confidence 5679999999999888888 99999999984 46789999999999
Q ss_pred cEEEEeCCC
Q 000085 2309 QLIVFTDPA 2317 (2342)
Q Consensus 2309 sIrVWDi~s 2317 (2342)
.|+|||...
T Consensus 274 ~I~vWd~~~ 282 (362)
T KOG0294|consen 274 FIKVWDIDM 282 (362)
T ss_pred eEEEEEccc
Confidence 999999653
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.81 E-value=1.8e-18 Score=206.07 Aligned_cols=242 Identities=17% Similarity=0.261 Sum_probs=211.6
Q ss_pred cccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc
Q 000085 1992 ASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 1992 hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
|......++++...+....+.+|+.|..+.++|..+++.+.++.||...|+.+.++++...++++|.|..|+||......
T Consensus 215 H~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 215 HSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred eccCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence 33344455668888887899999999999999999999999999999999999999999999999999999999887632
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
.......|..+|+.+..+|.|.++++++.||+..+.|+++
T Consensus 295 ----------------------------------------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~ 334 (506)
T KOG0289|consen 295 ----------------------------------------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS 334 (506)
T ss_pred ----------------------------------------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccC
Confidence 2234577999999999999999999999999999999999
Q ss_pred CeEEEEEecC----CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2152 GRLIRRLVGV----DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2152 GklIrsL~gh----~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
|.++...... +.++.+|+|||.++..+..++.+++|++..+.....+.+|.++|..++|+.+|-||++++.
T Consensus 335 g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----- 409 (506)
T KOG0289|consen 335 GSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----- 409 (506)
T ss_pred CcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec-----
Confidence 9988776542 3688999999999999999999999999865544445559999999999999999999863
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
|++|++||++..+.+.++......+|.++.|.+.|++|+.++.|
T Consensus 410 ------------------------------------d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 410 ------------------------------------DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred ------------------------------------CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecce
Confidence 67799999999998888886666789999999999999999988
Q ss_pred CcEEEEe
Q 000085 2308 KQLIVFT 2314 (2342)
Q Consensus 2308 GsIrVWD 2314 (2342)
=.|++++
T Consensus 454 l~Vy~~~ 460 (506)
T KOG0289|consen 454 LQVYICK 460 (506)
T ss_pred eEEEEEe
Confidence 8888887
No 81
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=2.7e-18 Score=197.92 Aligned_cols=238 Identities=13% Similarity=0.224 Sum_probs=180.1
Q ss_pred CcceeEEEEEcC-CCCEEEEEEcCCcEEEEecCC-cccc-eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc
Q 000085 1995 GIRSSAVVSITH-DKEIITGGHVDGSIKLLTSDG-AKTL-ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 1995 gI~Svt~VafSp-DGklLASGS~DGsIrVWDl~t-gkll-~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
.-.++.+++||| ...++++|+|||+||+|+++. |..+ +....|.++|.|++|+.||..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 334567799999 555888999999999999986 4443 3456799999999999999999999999999999999852
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCC--EEEEEeCCCcEEEEEC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLG--VVVSCSDSSDLLLHSI 2149 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~--lLaSGS~DGtIrIWDL 2149 (2342)
...+..|.++|.++.|-+... .|+|||.|.+|+.||.
T Consensus 106 -----------------------------------------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 106 -----------------------------------------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred -----------------------------------------eeeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence 344577999999999987655 8999999999999999
Q ss_pred CCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee--eecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2150 RRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA--RAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2150 rTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~--s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
|....+.++...+ .+.+.+-...+.+.+..+..|.+|++.+.... ...-+..-.+.||++..|....+.|+..|.
T Consensus 145 R~~~pv~t~~LPe-RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-- 221 (347)
T KOG0647|consen 145 RSSNPVATLQLPE-RVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-- 221 (347)
T ss_pred CCCCeeeeeeccc-eeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce--
Confidence 9999998887654 34445555567777778888889998543322 222225668999999999888888874433
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC--eEEEEEecCCC---------CCeEEEEEec
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL--KVFHVLKLGEG---------QDITALALNK 2296 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg--k~L~tL~lgHs---------~~ItsLafSP 2296 (2342)
+.|..+..+ +.-.+++ -|. -.|++|+|+|
T Consensus 222 ---------------------------------------v~iq~id~~~~~~nFtFk-CHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 222 ---------------------------------------VAIQYIDDPNPKDNFTFK-CHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred ---------------------------------------EEEEecCCCCccCceeEE-EeccCCCCCCceEEecceEeec
Confidence 333333322 1111222 121 2588999999
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 000085 2297 DNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2297 DG~~LaSGSsDGsIrVWDi~ 2316 (2342)
....|+|.|.||++.+||-+
T Consensus 262 ~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred ccceEEEecCCceEEEecch
Confidence 99999999999999999944
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.3e-18 Score=214.90 Aligned_cols=341 Identities=14% Similarity=0.151 Sum_probs=235.7
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc--ccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA--KTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg--kll~ 2032 (2342)
+.++++.+++.|+.|++|+........+-.+..++..| ...++-++...+|+.|++++.|.+|++|+...+ -++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~H---sDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s 111 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHH---SDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS 111 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhh---HhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh
Confidence 45667889999999999986542221111112222233 344555788889999999999999999999877 5788
Q ss_pred ecccCCCCeEEEEe-cCCCCEEEEEeCCCceEEEeccCCcc--cccc--------ccCCCCCCccccccCCCCCceeecC
Q 000085 2033 TASGHCAPVTCLAL-SSDSNFLVTGSQDTTILLWRIHRAFT--SRTG--------TIEPSSGMGTPGNSIGSSTPANASA 2101 (2342)
Q Consensus 2033 tL~GHt~~VtcLAf-SPDG~~LaSGS~DGTVrVWDl~tg~~--i~t~--------~~~~~~~V~svs~SpDG~~Las~s~ 2101 (2342)
++..|++-|.|+++ .++...+||||-|+.|.+||++++.. +... ..++..++++++.++.|..+++++.
T Consensus 112 tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 112 TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence 99999999999999 78889999999999999999998632 2211 2256678889999999988888776
Q ss_pred CCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEE
Q 000085 2102 DKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMT 2176 (2342)
Q Consensus 2102 D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlV 2176 (2342)
.+. +.|+. .+.+..++||++.|.++..++||..++|+|.||+|++||+...+|+.++..|. +..+..+++=..+.
T Consensus 192 ek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred ccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEE
Confidence 654 44554 56678899999999999999999999999999999999999999999998775 67777788778888
Q ss_pred EEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccC
Q 000085 2177 WNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVD 2256 (2342)
Q Consensus 2177 wdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~s 2256 (2342)
.+.++|.|..-++..............+|..+..+...+-+-+++.++....| ...... .+.+....-.
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW------~~~~~~----~l~~s~~~~~- 340 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRW------KLEPDI----ALSVSGDLDF- 340 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceec------CCcccc----ccccCCCCCc-
Confidence 88888988877775532222222345567777666444333344445553333 222111 0000000000
Q ss_pred CCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2257 NNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2257 s~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
...|....+.+... .+-.+++ .+.+|..-++-.|.++++|-..+|.+.+||+-
T Consensus 341 ----~~T~~~~~~~~~~~-tp~~vi~--Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl 393 (735)
T KOG0308|consen 341 ----FSTDSNNHSCDLTN-TPDSVIP--GGAAIKKHAMLNDKRHVLTKDAKGNVALWDIL 393 (735)
T ss_pred ----ccccCCCccccccC-CCceecc--CchhhhhhhhhcCcceEeeecCCCCEEEEEee
Confidence 00122222222211 2223333 23356666777799999999999999999953
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=4.4e-18 Score=192.99 Aligned_cols=272 Identities=13% Similarity=0.098 Sum_probs=218.1
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce--ecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE--TASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~--tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
+..|+|+.+|..+++|+.|+++.||+++..+... ...||.+.|-.++|+|. ...+++++.|.+|++||++.+++...
T Consensus 23 v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~ 102 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTAR 102 (313)
T ss_pred ceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEE
Confidence 4449999999999999999999999998876554 45789999999999984 57899999999999999999887665
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccc-cccCC-ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRR-RRIEG-PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i~~-~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
. .....-..+.++|+|.+++++..+.... .+..+ .+..-......+.-++|+-++++++-....|+|.|.....-+
T Consensus 103 i--~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk 180 (313)
T KOG1407|consen 103 I--ETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK 180 (313)
T ss_pred e--eccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccc
Confidence 4 2334445678999999998887764432 22211 111112234567888999888888877778999999999999
Q ss_pred EEEEEecCCc--EEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc
Q 000085 2154 LIRRLVGVDA--HAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2154 lIrsL~gh~v--ssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~ 2231 (2342)
.+.++..|.. .++.|+|+|++++.+..+..+.+|+++.-.-.+....++-+|..+.||.||++|++||.
T Consensus 181 pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE--------- 251 (313)
T KOG1407|consen 181 PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE--------- 251 (313)
T ss_pred cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCc---------
Confidence 9999999975 56678999999999999999999999764433333348899999999999999998873
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC----
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD---- 2307 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD---- 2307 (2342)
|..|-|=++.+|..+..++ +.++...|+|+|....|+-++.|
T Consensus 252 --------------------------------Dh~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLAyA~ddk~~d 297 (313)
T KOG1407|consen 252 --------------------------------DHFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLAYACDDKDGD 297 (313)
T ss_pred --------------------------------cceEEeEecccCCeEEEee--ccCCceeEEecCCCceeeEEecCCCCc
Confidence 5668888899999988887 88999999999999999877654
Q ss_pred -----CcEEEEeC
Q 000085 2308 -----KQLIVFTD 2315 (2342)
Q Consensus 2308 -----GsIrVWDi 2315 (2342)
|.+++|-.
T Consensus 298 ~~reag~vKiFG~ 310 (313)
T KOG1407|consen 298 SNREAGTVKIFGL 310 (313)
T ss_pred cccccceeEEecC
Confidence 56777753
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.4e-17 Score=194.07 Aligned_cols=266 Identities=16% Similarity=0.204 Sum_probs=205.4
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEc--CCcEEEEecCCcccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHV--DGSIKLLTSDGAKTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~--DGsIrVWDl~tgkll~ 2032 (2342)
.+|..+++++.|.++++|+...+. +.+++..+..++.. ++|......+..++. |.+||.-++.+.+.++
T Consensus 24 ~~G~~litss~dDsl~LYd~~~g~------~~~ti~skkyG~~~---~~Fth~~~~~i~sStk~d~tIryLsl~dNkylR 94 (311)
T KOG1446|consen 24 DDGLLLITSSEDDSLRLYDSLSGK------QVKTINSKKYGVDL---ACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLR 94 (311)
T ss_pred CCCCEEEEecCCCeEEEEEcCCCc------eeeEeecccccccE---EEEecCCceEEEccCCCCCceEEEEeecCceEE
Confidence 357788888899999999976532 23445555556554 788777776666665 9999999999999999
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
.+.||...|+.++.+|-+..++|+|.|++|++||++...+..
T Consensus 95 YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg-------------------------------------- 136 (311)
T KOG1446|consen 95 YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG-------------------------------------- 136 (311)
T ss_pred EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce--------------------------------------
Confidence 999999999999999999999999999999999998643321
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--eEEEEEec-----CCcEEEEEecCCcEEEEEeCCCeEE
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG--RLIRRLVG-----VDAHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG--klIrsL~g-----h~vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
.+ +...-..++|+|+|-++|++.....|++||+|.- .+..++.- .+...+.||+||+.++.....+.++
T Consensus 137 --~l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~ 212 (311)
T KOG1446|consen 137 --LL--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIY 212 (311)
T ss_pred --EE--ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEE
Confidence 11 1222346789999999999998889999999863 33344432 2367899999999999999888888
Q ss_pred EEEe-CCceeeeecCC-CCC-CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccC
Q 000085 2186 SFTL-NGVLVARAKLP-LSG-SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDF 2262 (2342)
Q Consensus 2186 I~dl-nG~~L~s~~~~-Hs~-~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias 2262 (2342)
+.+. .|..+...... ... ---...|+|||+++++|+.
T Consensus 213 ~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~---------------------------------------- 252 (311)
T KOG1446|consen 213 LLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD---------------------------------------- 252 (311)
T ss_pred EEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC----------------------------------------
Confidence 8875 45543332221 111 2256789999999998862
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
||+|.+|++++++.+..+...+..++.++.|+|.-.++++++ ..+.+|-
T Consensus 253 -dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~ 301 (311)
T KOG1446|consen 253 -DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWL 301 (311)
T ss_pred -CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEe
Confidence 788999999999999999944899999999999887777664 5677776
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=6.6e-19 Score=217.36 Aligned_cols=233 Identities=16% Similarity=0.214 Sum_probs=198.2
Q ss_pred CCCCEEEEEEcCCcEEEEecCCcc------cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2006 HDKEIITGGHVDGSIKLLTSDGAK------TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2006 pDGklLASGS~DGsIrVWDl~tgk------ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
|.+++|.+|+.||.|++|++.... .+.+++.|.++|..++...+|+.|+|+|.|.||++|+...+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-------- 106 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-------- 106 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--------
Confidence 456689999999999999976422 467889999999999999999999999999999999988741
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEE-ecCCCEEEEEeCCCcEEEEECCCC--eEEE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCV-SSDLGVVVSCSDSSDLLLHSIRRG--RLIR 2156 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~Vaf-SPDg~lLaSGS~DGtIrIWDLrTG--klIr 2156 (2342)
.-+..++..|.+.|.|+++ -++..++||||.|+.|.+||+.+| +.+.
T Consensus 107 ------------------------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~ 156 (735)
T KOG0308|consen 107 ------------------------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVA 156 (735)
T ss_pred ------------------------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhh
Confidence 0134467889999999999 788899999999999999999988 3444
Q ss_pred EEe---------cC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2157 RLV---------GV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2157 sL~---------gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
++. ++ .++.++..+.|.+++.+...+.+++|+.....-.....+|...|.++..++||..+++||.
T Consensus 157 s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS--- 233 (735)
T KOG0308|consen 157 SFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS--- 233 (735)
T ss_pred hccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC---
Confidence 332 22 3688899999999999999999999998744333334479999999999999999998862
Q ss_pred CCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2226 TNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2226 ~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS 2305 (2342)
||+|++||+...++++++. .|...|+++..+|+-.++++|+
T Consensus 234 --------------------------------------DgtIrlWdLgqQrCl~T~~-vH~e~VWaL~~~~sf~~vYsG~ 274 (735)
T KOG0308|consen 234 --------------------------------------DGTIRLWDLGQQRCLATYI-VHKEGVWALQSSPSFTHVYSGG 274 (735)
T ss_pred --------------------------------------CceEEeeeccccceeeeEE-eccCceEEEeeCCCcceEEecC
Confidence 7889999999999999998 8999999999999999999999
Q ss_pred CCCcEEEEeCCCC
Q 000085 2306 ADKQLIVFTDPAL 2318 (2342)
Q Consensus 2306 sDGsIrVWDi~sL 2318 (2342)
.||.|..=|+.+.
T Consensus 275 rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 275 RDGNIYRTDLRNP 287 (735)
T ss_pred CCCcEEecccCCc
Confidence 9999999886553
No 86
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=6.8e-19 Score=208.13 Aligned_cols=260 Identities=13% Similarity=0.119 Sum_probs=196.6
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++|+++|+++.|.+.-+|...... .+.+-.++.+ +..+|..+.||||.++|++++.|-.+.+||+.+|.+...+
T Consensus 234 ~nGkyLAsaSkD~Taiiw~v~~d~---~~kl~~tlvg---h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y 307 (519)
T KOG0293|consen 234 HNGKYLASASKDSTAIIWIVVYDV---HFKLKKTLVG---HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY 307 (519)
T ss_pred CCCeeEeeccCCceEEEEEEecCc---ceeeeeeeec---ccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc
Confidence 579999999999999999854311 1233334444 4456677999999999999999999999999999887766
Q ss_pred c-cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcc-ccccCCc
Q 000085 2035 S-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSR-RRRIEGP 2112 (2342)
Q Consensus 2035 ~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~-~~~i~~~ 2112 (2342)
. +|...+.|++|.|||..+++||.|++|..||++.... ..-.......+..++.++||+.+.....|... .......
T Consensus 308 ~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~ 386 (519)
T KOG0293|consen 308 PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR 386 (519)
T ss_pred ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh
Confidence 4 4568999999999999999999999999999987431 11112223557889999999998776666433 2332222
Q ss_pred eEE-ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcE----EEEE-ecCCcEEEEEeCCCeEEE
Q 000085 2113 IHV-LRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAH----AVSL-SSEGVIMTWNKLQHTLSS 2186 (2342)
Q Consensus 2113 l~~-L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vs----sLSf-SpDG~IlVwdssdGsI~I 2186 (2342)
+.. +.....+|++.++|.|++++++-=.+..+.+||+.....++.+.||... .-|| ..+..+++.++.|++|++
T Consensus 387 ~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyI 466 (519)
T KOG0293|consen 387 VDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYI 466 (519)
T ss_pred hhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEE
Confidence 111 3445678999999999999999999999999999988888888887521 1233 345578888899999999
Q ss_pred EEeCCceeeeecCCCCCCeEEEEEccCCC-EEEEEe
Q 000085 2187 FTLNGVLVARAKLPLSGSIGCMEISLDGH-SALIGV 2221 (2342)
Q Consensus 2187 ~dlnG~~L~s~~~~Hs~~ItsLafSPDGk-~LaSGS 2221 (2342)
|......+.....+|...|+||+|+|... .+++||
T Consensus 467 Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASas 502 (519)
T KOG0293|consen 467 WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASAS 502 (519)
T ss_pred EEccCCceeEeecCCcceeeEEecCCCCHHHhhccC
Confidence 99865555555667999999999999654 455554
No 87
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=2e-18 Score=198.04 Aligned_cols=284 Identities=17% Similarity=0.244 Sum_probs=211.2
Q ss_pred ceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEec
Q 000085 1988 ALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1988 sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl 2067 (2342)
.+.+|..+|-. ++......++.+++.|.+.+||.+++|+|+.++.||.+.|.|++|++.+.+++|+|.|++..||..
T Consensus 143 e~~GHkDGiW~---Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 143 ELEGHKDGIWH---VAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred hhcccccceee---ehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 34445555544 555555558999999999999999999999999999999999999999999999999999999985
Q ss_pred cCCcccccc--ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 000085 2068 HRAFTSRTG--TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLL 2145 (2342)
Q Consensus 2068 ~tg~~i~t~--~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIr 2145 (2342)
.-....... ...+.+.- ....+ |...-...+........+..|+..+.||.+.|.++.|-..|+.+++++.|.+..
T Consensus 220 av~~~vP~~~a~~~hSsEe-E~e~s-De~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEE-EEEHS-DEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred hhcCcCCCCCCCCCCCchh-hhhcc-cccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 432111110 00000000 00000 000000000001111123457889999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCce-eeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2146 LHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL-VARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2146 IWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
+||+++|..+..+.+|+ .+.++..|..++++...++.+.++|++.... -...+.+|...|+++.|..|.+ +++|+
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgS- 375 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGS- 375 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecC-
Confidence 99999999999999986 5778889999999999999999999986322 2233445999999999987654 55554
Q ss_pred CCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC-eEEEEEecCCCCCeEEEEEecCCCEE
Q 000085 2223 SSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL-KVFHVLKLGEGQDITALALNKDNTNL 2301 (2342)
Q Consensus 2223 DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg-k~L~tL~lgHs~~ItsLafSPDG~~L 2301 (2342)
.|.+|+|||+++. .++.++. -..+++.++++..+..|
T Consensus 376 ----------------------------------------DDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iI 413 (481)
T KOG0300|consen 376 ----------------------------------------DDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPII 413 (481)
T ss_pred ----------------------------------------CCceEEEeeeccccCcceeee--cCCccceeEeecCCceE
Confidence 2788999999885 4566666 56789999999999989
Q ss_pred EEEeCCCcEEEEeCCCCCh
Q 000085 2302 LVSTADKQLIVFTDPALSL 2320 (2342)
Q Consensus 2302 aSGSsDGsIrVWDi~sLs~ 2320 (2342)
+.--.+..|++||..+...
T Consensus 414 AiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 414 AIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred EeccCCceEEEEecCCCcc
Confidence 8888999999999776643
No 88
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.7e-18 Score=196.08 Aligned_cols=289 Identities=12% Similarity=0.131 Sum_probs=217.6
Q ss_pred cccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEE
Q 000085 1985 FPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILL 2064 (2342)
Q Consensus 1985 ~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrV 2064 (2342)
+|..+..+-.... ..|+.|++.|.+||.|+.||.|.|||+.|...-+.+.+|..+|+|++||+||+.|+|+|.|..|++
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEE
Confidence 4444444333333 568999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EeccCCccccccccCCCCCCccccccCCCCCc--eeecCCCccccccCCceEEecCCC------CCeEEEEEecCCCEEE
Q 000085 2065 WRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTP--ANASADKSRRRRIEGPIHVLRGHH------REILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~~~~V~svs~SpDG~~L--as~s~D~s~~~~i~~~l~~L~GHs------~~Vt~VafSPDg~lLa 2136 (2342)
||+..+.+.+.+ ..+..+....++|..... ++.............+.+.+-... ....+..|.+.|++++
T Consensus 92 wDl~~gs~l~ri--rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 92 WDLLKGSPLKRI--RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred EeccCCCceeEE--EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEE
Confidence 999998766554 445677778888754433 322222222222222333332111 1223446888999999
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecC---CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee----eecC-------CCC
Q 000085 2137 SCSDSSDLLLHSIRRGRLIRRLVGV---DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA----RAKL-------PLS 2202 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrTGklIrsL~gh---~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~----s~~~-------~Hs 2202 (2342)
+|...|.+.++|..+-+++..++-. .+..+.++..|..++.+..+..|+.|++..-... .... -..
T Consensus 170 tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk 249 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNK 249 (405)
T ss_pred EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhh
Confidence 9999999999999999999887643 3678899999999999999999999997521100 0000 023
Q ss_pred CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEe
Q 000085 2203 GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLK 2282 (2342)
Q Consensus 2203 ~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~ 2282 (2342)
.+-.+++||.+|.|+++|+. ....++||.-..|.+++.+.
T Consensus 250 ~~Wk~ccfs~dgeYv~a~s~----------------------------------------~aHaLYIWE~~~GsLVKILh 289 (405)
T KOG1273|consen 250 LQWKKCCFSGDGEYVCAGSA----------------------------------------RAHALYIWEKSIGSLVKILH 289 (405)
T ss_pred hhhhheeecCCccEEEeccc----------------------------------------cceeEEEEecCCcceeeeec
Confidence 35578899999999998861 13569999999999999988
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2283 LGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2283 lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
...+.....+.|+|-...+++- ..|.+++|....
T Consensus 290 G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 290 GTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred CCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 4444678899999998878777 889999999543
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.79 E-value=5.5e-19 Score=209.74 Aligned_cols=264 Identities=19% Similarity=0.318 Sum_probs=203.4
Q ss_pred eccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc--cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEec
Q 000085 1990 AFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK--TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1990 s~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk--ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl 2067 (2342)
.+|.+.++. +.|-++...|++|+.|..|++|++..++ .+.++.|-.++|+.+.|.+++.++++++.|+++++|++
T Consensus 172 d~h~gev~~---v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 172 DAHEGEVHD---VEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hccccccce---eEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 345555544 8888888899999999999999998776 67889999999999999999999999999999999999
Q ss_pred cCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2068 HRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIW 2147 (2342)
.... ..++|.||++.|+++.|......+++|+.|.+|++|
T Consensus 249 d~~r----------------------------------------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 249 DSLR----------------------------------------LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred cchh----------------------------------------hhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 8853 345678999999999998877779999999999999
Q ss_pred ECCCCeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2148 SIRRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2148 DLrTGklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
|+..+.|.+++-. .....++.+ +..++.+-.+++|+.|++.+....... +..+.|+++..+++|..+++.+
T Consensus 289 Dl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv-~~gg~vtSl~ls~~g~~lLsss----- 360 (459)
T KOG0288|consen 289 DLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSV-PLGGRVTSLDLSMDGLELLSSS----- 360 (459)
T ss_pred hhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEe-ecCcceeeEeeccCCeEEeeec-----
Confidence 9999998887643 334444443 444555556666777776543322221 2346999999999999998765
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC---CCCCeEEEEEecCCCEEEE
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG---EGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg---Hs~~ItsLafSPDG~~LaS 2303 (2342)
.|..+.+.|+.+.+..+.+... .....+.+.|||++.|+++
T Consensus 361 ------------------------------------RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaA 404 (459)
T KOG0288|consen 361 ------------------------------------RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAA 404 (459)
T ss_pred ------------------------------------CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeee
Confidence 2667889999988887776521 2345899999999999999
Q ss_pred EeCCCcEEEEeCCCCChhhh------h-hhhhccccCCCcccccc
Q 000085 2304 STADKQLIVFTDPALSLKVV------D-QMLKLGWEGDGLSPLIK 2341 (2342)
Q Consensus 2304 GSsDGsIrVWDi~sLs~k~L------d-QLLk~GWegDGLspLis 2341 (2342)
||.||.|+||++.+...... . ......|.+.| ++|++
T Consensus 405 GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG-~~Lls 448 (459)
T KOG0288|consen 405 GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG-SGLLS 448 (459)
T ss_pred ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC-chhhc
Confidence 99999999999765432111 1 34556787777 34443
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.79 E-value=4.6e-18 Score=219.34 Aligned_cols=231 Identities=20% Similarity=0.278 Sum_probs=197.4
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee-cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET-ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t-L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
+.|..|. +.++++|+.|++|++||..++..+.+ +.||.+.|+++++..-+.+|++||.|.|++|||..++
T Consensus 211 ~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg------- 281 (537)
T KOG0274|consen 211 VLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG------- 281 (537)
T ss_pred hhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-------
Confidence 4445555 66889999999999999999998888 9999999999999877899999999999999998886
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
.+.+++.||.+.|.|+... ...+++|+.|.+|++|++.++.+++.
T Consensus 282 ---------------------------------~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l 326 (537)
T KOG0274|consen 282 ---------------------------------ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNL 326 (537)
T ss_pred ---------------------------------cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEE
Confidence 3456789999999998864 56788899999999999999999999
Q ss_pred EecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccccc
Q 000085 2158 LVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGL 2237 (2342)
Q Consensus 2158 L~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l 2237 (2342)
+.+|....-++.-++.+++.+..++.|.+|++..........+|..+|+++.+... .++++|+.
T Consensus 327 ~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~--------------- 390 (537)
T KOG0274|consen 327 LRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL--------------- 390 (537)
T ss_pred eccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee---------------
Confidence 99887555556666999999999999999999855555555669999999988765 88888863
Q ss_pred CCCCCCccccccccccccCCCCccCCCCeEEEEECCCC-eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2238 NSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL-KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2238 ~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg-k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
|++|++||+.++ +++.++. +|..-+.++.+ .+++|++++.||+|++||..
T Consensus 391 --------------------------D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 391 --------------------------DTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred --------------------------ccceEeecCCchhhhhhhhc-CCccccccccc--ccceeEeccccccEEEeecc
Confidence 677999999999 9999999 89888866554 57789999999999999965
Q ss_pred CC
Q 000085 2317 AL 2318 (2342)
Q Consensus 2317 sL 2318 (2342)
..
T Consensus 442 ~~ 443 (537)
T KOG0274|consen 442 EG 443 (537)
T ss_pred cC
Confidence 55
No 91
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.79 E-value=6.4e-19 Score=212.69 Aligned_cols=240 Identities=13% Similarity=0.111 Sum_probs=191.7
Q ss_pred ccceecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcccc
Q 000085 2029 KTLETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRR 2107 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~ 2107 (2342)
+.+.++.||+..|+++.|.| .+.+|+||+.|+.|+||++...
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~------------------------------------- 247 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD------------------------------------- 247 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC-------------------------------------
Confidence 45678899999999999999 8999999999999999999762
Q ss_pred ccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCC-cEEEEEeCCCeEE
Q 000085 2108 RIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEG-VIMTWNKLQHTLS 2185 (2342)
Q Consensus 2108 ~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG-~IlVwdssdGsI~ 2185 (2342)
.++++++.||..+|..++|+.+|..++|+|-|++|++||++||+++.++... ..+++.+.||+ ++++.+..++.|.
T Consensus 248 --~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~ 325 (503)
T KOG0282|consen 248 --RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIR 325 (503)
T ss_pred --cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEE
Confidence 2456788999999999999999999999999999999999999999999764 47899999999 8999999999999
Q ss_pred EEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc------------ccccccccc
Q 000085 2186 SFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT------------EDFDLASDQ 2253 (2342)
Q Consensus 2186 I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~------------iaFspd~~~ 2253 (2342)
.|++....+....-.|-+.|..+.|-++|+++++.+.+.+ .++|....+.... +..+|....
T Consensus 326 ~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks------~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~ 399 (503)
T KOG0282|consen 326 QWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS------VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW 399 (503)
T ss_pred EEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc------EEEEEcCCCccchhhcchhhccCcceecCCCCCe
Confidence 9999865555444458999999999999999999998776 4566655543221 122222221
Q ss_pred ccCCCCccCCCCeEEEEECCCCe---EEEEEecCCC--CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2254 SVDNNRFDFPSPSICFLDLHTLK---VFHVLKLGEG--QDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2254 s~ss~~ias~DGsIrIWDL~Tgk---~L~tL~lgHs--~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
......|+.|.++.+...- .-..+. +|. +--..+.|||||++|++|+.||.+.+||-.+.
T Consensus 400 ----~~aQs~dN~i~ifs~~~~~r~nkkK~fe-Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 400 ----FAAQSMDNYIAIFSTVPPFRLNKKKRFE-GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred ----ehhhccCceEEEEecccccccCHhhhhc-ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh
Confidence 1122358899998865321 122344 664 34567899999999999999999999995543
No 92
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.78 E-value=7.7e-18 Score=198.03 Aligned_cols=261 Identities=13% Similarity=0.119 Sum_probs=198.3
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++|.+++++.-++.++||+..+ +...|.+. .....+..+.|+|.+.+|++|+.||++.+|.+.++...+.+
T Consensus 116 hdgtlLATGdmsG~v~v~~~st--g~~~~~~~-------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~ 186 (399)
T KOG0296|consen 116 HDGTLLATGDMSGKVLVFKVST--GGEQWKLD-------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM 186 (399)
T ss_pred cCceEEEecCCCccEEEEEccc--CceEEEee-------cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe
Confidence 5788999999999999999877 33344432 12334456999999999999999999999999998888999
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcccc---ccCC
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRR---RIEG 2111 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~---~i~~ 2111 (2342)
.||..+++|=.|.|||+.+++|..||+|++|+..++...+...........++.++.++..+..+..+..... ..++
T Consensus 187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 187 SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccce
Confidence 9999999999999999999999999999999999998777664333445556666666666665555433221 1111
Q ss_pred ceE--------EecCCCCCeEEEEE---ecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEe
Q 000085 2112 PIH--------VLRGHHREILCCCV---SSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2112 ~l~--------~L~GHs~~Vt~Vaf---SPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwds 2179 (2342)
.+. ....|...+.||.+ +..-.+.++|+.||+|.|||+.+..+.+.+... .+..+.|-+ ..+++...
T Consensus 267 Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c 345 (399)
T KOG0296|consen 267 VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTAC 345 (399)
T ss_pred EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeec
Confidence 222 22345555555555 456778899999999999999887766666543 356666766 56667777
Q ss_pred CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2180 LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2180 sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
.+|.++.|+.....+.....+|...|.+++++|++++++++|.|+.
T Consensus 346 ~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 346 ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred cCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence 7888888888755666666779999999999999999999987665
No 93
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.4e-18 Score=205.10 Aligned_cols=227 Identities=20% Similarity=0.321 Sum_probs=190.8
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
+.|++-+|+|.+|+.|+-.|.|++|.+.+|.++..+.+|-..|||+.|+-||.+|+|||.||.|.+|.+..-.
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv------- 156 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV------- 156 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec-------
Confidence 6679999999999999999999999999999999999999999999999999999999999999999987621
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
+++. +. ...+++.+..|+-+|+.+.+.+. ..+++|+|.|.++++||+..|.++.
T Consensus 157 -----------~a~~--------~~-----~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl 212 (476)
T KOG0646|consen 157 -----------SADN--------DH-----SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL 212 (476)
T ss_pred -----------cccc--------CC-----CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE
Confidence 1000 00 24678899999999999998764 4689999999999999999999988
Q ss_pred EEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeCCce---e-------------eeecCCCCC--CeEEEEEccCCCEE
Q 000085 2157 RLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL---V-------------ARAKLPLSG--SIGCMEISLDGHSA 2217 (2342)
Q Consensus 2157 sL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~---L-------------~s~~~~Hs~--~ItsLafSPDGk~L 2217 (2342)
++... .+.+++++|-++.+..+..+|.|.+..+.+.. . .....+|.+ .|+|++++-||..|
T Consensus 213 ti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL 292 (476)
T KOG0646|consen 213 TITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLL 292 (476)
T ss_pred EEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEE
Confidence 87654 57899999999999999999998877664221 0 112234777 99999999999999
Q ss_pred EEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecC
Q 000085 2218 LIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2218 aSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
++|+. ||.|+|||+.+.+++.++. ...++|+.+.+.|=
T Consensus 293 lSGd~-----------------------------------------dg~VcvWdi~S~Q~iRtl~-~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 293 LSGDE-----------------------------------------DGKVCVWDIYSKQCIRTLQ-TSKGPVTNLQINPL 330 (476)
T ss_pred EeeCC-----------------------------------------CCCEEEEecchHHHHHHHh-hhccccceeEeecc
Confidence 99962 7889999999999998887 45688999998664
Q ss_pred C
Q 000085 2298 N 2298 (2342)
Q Consensus 2298 G 2298 (2342)
.
T Consensus 331 ~ 331 (476)
T KOG0646|consen 331 E 331 (476)
T ss_pred c
Confidence 3
No 94
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=99.78 E-value=3.2e-19 Score=181.58 Aligned_cols=104 Identities=34% Similarity=0.589 Sum_probs=86.7
Q ss_pred ceEEEEeeeeEeeeeeeeEEEEEEEeeEEEEEeCCCCCCCCC---CccccccccceEeeccceeEEeeccccCcccEEEE
Q 000085 1473 ERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEG---TSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALEL 1549 (2342)
Q Consensus 1473 EkVils~~c~mVtPl~v~~G~L~IT~~~LyF~vd~~~~~~~~---~~~~~~~~k~~~~~~~~I~~i~~Rr~~l~~~alEi 1549 (2342)
|+++++++|+||+|+.++||+|.||+.+|||++|++.+..+. ....+.+.++++|++++|++||+|||+||++||||
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEi 80 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALEL 80 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEE
Confidence 589999999999999999999999999999999875544322 22334566889999999999999999999999999
Q ss_pred EEeCCceEEEEcCChhhHHHHHHHHHhcCCC
Q 000085 1550 FMVDRSNFFFDFGSTEGRRNAYRAIVQARPP 1580 (2342)
Q Consensus 1550 f~~~~~s~f~~F~~~~~~~~~~~~i~~~~~~ 1580 (2342)
|+.|+++|||+|.+++. ++++++..|+
T Consensus 81 F~~d~~~~f~~F~~~~~----~k~vv~~lp~ 107 (108)
T cd01201 81 FLASRTSIFFAFPDQNA----VKKVVYALPR 107 (108)
T ss_pred EEeCCceEEEEeCcHHH----HHHHHhhcCC
Confidence 99999999999986544 4555555554
No 95
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.77 E-value=3.6e-17 Score=195.12 Aligned_cols=269 Identities=13% Similarity=0.136 Sum_probs=217.1
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccC
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGH 2037 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GH 2037 (2342)
..+.+++.|+++-+|+.+.. +.+..-.++...++.+.++++...+++++.|..|+||.............|
T Consensus 232 ~~ilTGG~d~~av~~d~~s~---------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h 302 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSN---------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPH 302 (506)
T ss_pred CcceecCCCCceEEEecchh---------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccc
Confidence 45667888988889987652 222333445556677999999999999999999999999888888888999
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEec
Q 000085 2038 CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLR 2117 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~ 2117 (2342)
..+|+.+..+|.|.||+++|.|++..+.|+.++.+... ..-.
T Consensus 303 ~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~--------------------------------------vs~~ 344 (506)
T KOG0289|consen 303 EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTV--------------------------------------VSDE 344 (506)
T ss_pred cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEE--------------------------------------Eeec
Confidence 99999999999999999999999999999988643211 0111
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCC-cee
Q 000085 2118 GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLV 2194 (2342)
Q Consensus 2118 GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L 2194 (2342)
+..-.+++.+|+|||-++.+|..||.|+|||+.++..+..|.+|. +..++|+.+|.+++....++.|.+|++.. +.+
T Consensus 345 ~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 345 TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF 424 (506)
T ss_pred cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc
Confidence 223468999999999999999999999999999999999999986 78999999999999999999999999963 233
Q ss_pred eeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC-
Q 000085 2195 ARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH- 2273 (2342)
Q Consensus 2195 ~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~- 2273 (2342)
..........+.++.|...|.+|++++. |=.|++++-.
T Consensus 425 kt~~l~~~~~v~s~~fD~SGt~L~~~g~-----------------------------------------~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 425 KTIQLDEKKEVNSLSFDQSGTYLGIAGS-----------------------------------------DLQVYICKKKT 463 (506)
T ss_pred ceeeccccccceeEEEcCCCCeEEeecc-----------------------------------------eeEEEEEeccc
Confidence 3333334457999999999999998852 2234444422
Q ss_pred -CCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2274 -TLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2274 -Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
+..++..+. .|.+..+++.|....++++++|.|..++++..
T Consensus 464 k~W~~~~~~~-~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 464 KSWTEIKELA-DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccceeeehhh-hcccccceeeecccceEEeeccchhheEEeec
Confidence 455666666 78888999999999999999999999999863
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=9.3e-18 Score=201.90 Aligned_cols=241 Identities=20% Similarity=0.240 Sum_probs=201.1
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc----ee-------------c-ccCCCCeEEEEecCCCCEEEEE
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL----ET-------------A-SGHCAPVTCLALSSDSNFLVTG 2056 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll----~t-------------L-~GHt~~VtcLAfSPDG~~LaSG 2056 (2342)
+..++.|++++||++++++++.|++|.-|++.+|+.. .+ - .+|...|.|++.|+||+||+||
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence 4456788999999999999999999999999887632 11 1 3788999999999999999999
Q ss_pred eCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE
Q 000085 2057 SQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2057 S~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa 2136 (2342)
+.|..|.||+..+. .+++.+.+|.+.|.+++|-.....++
T Consensus 221 g~d~~v~Iw~~~t~----------------------------------------ehv~~~~ghr~~V~~L~fr~gt~~ly 260 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTL----------------------------------------EHVKVFKGHRGAVSSLAFRKGTSELY 260 (479)
T ss_pred CCCceEEEecCccc----------------------------------------chhhcccccccceeeeeeecCcccee
Confidence 99999999999885 34456799999999999998888999
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecCCc--EEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCC
Q 000085 2137 SCSDSSDLLLHSIRRGRLIRRLVGVDA--HAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDG 2214 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrTGklIrsL~gh~v--ssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDG 2214 (2342)
+++.|++|++|++.....+.++.+|+. ..+....-++.+-.+.+|.++++|.+... ....+.+|.+.+.|++|-.+
T Consensus 261 s~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~- 338 (479)
T KOG0299|consen 261 SASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIND- 338 (479)
T ss_pred eeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecc-
Confidence 999999999999999999999999874 44555556677777789999999999532 22334458889999999755
Q ss_pred CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC---C----
Q 000085 2215 HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG---Q---- 2287 (2342)
Q Consensus 2215 k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs---~---- 2287 (2342)
.++++|+. +|.|.+|++.+.+++++....|+ .
T Consensus 339 ~HfvsGSd-----------------------------------------nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~ 377 (479)
T KOG0299|consen 339 EHFVSGSD-----------------------------------------NGSIALWSLLKKKPLFTSRLAHGVIPELDPV 377 (479)
T ss_pred cceeeccC-----------------------------------------CceEEEeeecccCceeEeeccccccCCcccc
Confidence 45666752 67899999999999998877664 2
Q ss_pred ----CeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2288 ----DITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2288 ----~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.|++++..|....+++|+.+|.|++|.+...
T Consensus 378 ~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 7899999999999999999999999996544
No 97
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.77 E-value=1.4e-17 Score=196.48 Aligned_cols=247 Identities=22% Similarity=0.303 Sum_probs=189.8
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCC---CEEEEEeCCCceEEEeccCCccccccccCCCCCC
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDS---NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGM 2084 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG---~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V 2084 (2342)
++.|.+|++||.++|||. .|+...++.||.++|..++|.-.. ..|+++|.|.++++|.++.+....
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~---------- 183 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV---------- 183 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh----------
Confidence 679999999999999997 478889999999999988885433 469999999999999998764321
Q ss_pred ccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-------------
Q 000085 2085 GTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR------------- 2151 (2342)
Q Consensus 2085 ~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT------------- 2151 (2342)
..++...||...|-+|...++|..++|||.|.+|.||+..+
T Consensus 184 --------------------------~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 184 --------------------------KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred --------------------------hHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence 11223359999999999999999999999999999999321
Q ss_pred ------------CeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCE
Q 000085 2152 ------------GRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2152 ------------GklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~ 2216 (2342)
+..+-++.+|. +..+.|++ .........|.+|+.|++. |+...... ....++|+.++|...+
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~L 314 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKL 314 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee--cCcceeEeecccccce
Confidence 12445566765 67788888 4445556778999999986 43333322 5678999999999999
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC--e-EEEEEecCCCCCeEEEE
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL--K-VFHVLKLGEGQDITALA 2293 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg--k-~L~tL~lgHs~~ItsLa 2293 (2342)
|++|+. |..|++||.+++ . +.+++. +|...|.++.
T Consensus 315 l~~gss-----------------------------------------dr~irl~DPR~~~gs~v~~s~~-gH~nwVssvk 352 (423)
T KOG0313|consen 315 LASGSS-----------------------------------------DRHIRLWDPRTGDGSVVSQSLI-GHKNWVSSVK 352 (423)
T ss_pred eeecCC-----------------------------------------CCceeecCCCCCCCceeEEeee-cchhhhhhee
Confidence 998862 667999998764 3 344555 9999999999
Q ss_pred EecCC-CEEEEEeCCCcEEEEeCCCCC------hhhhhhhhhccccCCCc
Q 000085 2294 LNKDN-TNLLVSTADKQLIVFTDPALS------LKVVDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2294 fSPDG-~~LaSGSsDGsIrVWDi~sLs------~k~LdQLLk~GWegDGL 2336 (2342)
|+|.. .+|++|+.||++++||..... .+.-+.++...|...++
T Consensus 353 wsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~ 402 (423)
T KOG0313|consen 353 WSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGL 402 (423)
T ss_pred cCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCce
Confidence 99976 467799999999999976554 12235566666665543
No 98
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.77 E-value=4.5e-16 Score=184.69 Aligned_cols=282 Identities=16% Similarity=0.202 Sum_probs=198.3
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEE-EEEEcCCcEEEEecCCcccceeccc
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEII-TGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklL-ASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
..+++++.|+.+++|+..++... ..+..+ .. +..++|+|+|+.+ ++++.++.|++||..+++.+..+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~------~~~~~~-~~---~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVT------RTFPVG-QR---PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS 71 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceE------EEEECC-CC---CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC
Confidence 35667788899999997653211 112211 11 3458999999965 6777899999999999988777766
Q ss_pred CCCCeEEEEecCCCCEEEE-EeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEE
Q 000085 2037 HCAPVTCLALSSDSNFLVT-GSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaS-GS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~ 2115 (2342)
|.. +..++|+|+++.+++ ++.|+++++||+.+.... ..
T Consensus 72 ~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~----------------------------------------~~ 110 (300)
T TIGR03866 72 GPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVL----------------------------------------AE 110 (300)
T ss_pred CCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE----------------------------------------eE
Confidence 554 567899999997755 456899999999774211 11
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCeEEEEEe-cCCcEEEEEecCCcEEEEEe-CCCeEEEEEeCCc
Q 000085 2116 LRGHHREILCCCVSSDLGVVVSCSDSS-DLLLHSIRRGRLIRRLV-GVDAHAVSLSSEGVIMTWNK-LQHTLSSFTLNGV 2192 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPDg~lLaSGS~DG-tIrIWDLrTGklIrsL~-gh~vssLSfSpDG~IlVwds-sdGsI~I~dlnG~ 2192 (2342)
+. +...+.+++|+|++.++++++.++ .+.+||..+++.+..+. ......++++++|..++... .++.+.+|++...
T Consensus 111 ~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 111 IP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred ee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 11 123357799999999999888775 56778999888776543 34467789999999776554 5789999999753
Q ss_pred ee-eeecCC----CC--CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCC
Q 000085 2193 LV-ARAKLP----LS--GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSP 2265 (2342)
Q Consensus 2193 ~L-~s~~~~----Hs--~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DG 2265 (2342)
.. ...... +. .....++|+|+|++++++.. .++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~----------------------------------------~~~ 229 (300)
T TIGR03866 190 KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG----------------------------------------PAN 229 (300)
T ss_pred eeeeeeeecccccccccCCccceEECCCCCEEEEEcC----------------------------------------CCC
Confidence 32 222111 11 12356889999998765521 145
Q ss_pred eEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCChhhhhhhhhccccCCCc
Q 000085 2266 SICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS-TADKQLIVFTDPALSLKVVDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2266 sIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG-SsDGsIrVWDi~sLs~k~LdQLLk~GWegDGL 2336 (2342)
.|.+||+.+++.+..+. +...+.+++|+|+|.+|+++ +.+|.|++||..+.. +...++.+-.+.|+
T Consensus 230 ~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~ 296 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK---VIKSIKVGRLPWGV 296 (300)
T ss_pred eEEEEECCCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc---EEEEEEccccccee
Confidence 69999999998876665 44579999999999999886 569999999977653 22233455555554
No 99
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.77 E-value=9.5e-18 Score=201.28 Aligned_cols=273 Identities=11% Similarity=0.105 Sum_probs=215.6
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCc---ccceeccc--CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGA---KTLETASG--HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tg---kll~tL~G--Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
-|+++.+|...+.+.+|+ .|.|+|||+... ..+..+.. ...-|.++.+.|||+.|++|+.-.++.|||+.....
T Consensus 421 vVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp 499 (705)
T KOG0639|consen 421 VVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP 499 (705)
T ss_pred EEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc
Confidence 366788999999999987 688999998642 23333332 346789999999999999999999999999987543
Q ss_pred cccc-ccCCCCCCccccccCCCCCceeecCCC-ccccccC--CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000085 2073 SRTG-TIEPSSGMGTPGNSIGSSTPANASADK-SRRRRIE--GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2073 i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i~--~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWD 2148 (2342)
..+. .......+++++.+||.+...++..|+ +.+|++. ..+..|+||++.+.|+.+++||..|.||+-|.+|+.||
T Consensus 500 rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 500 RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWD 579 (705)
T ss_pred chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehh
Confidence 2222 233345678899999999887776665 4668874 45788999999999999999999999999999999999
Q ss_pred CCCCeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2149 IRRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2149 LrTGklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
+++++.+....- ..+..+..+|.|.+++.++.++.+.+....+.... ...-|..-|.++.|.+.|+++++.+.|
T Consensus 580 lregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky-qlhlheScVLSlKFa~cGkwfvStGkD---- 654 (705)
T KOG0639|consen 580 LREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY-QLHLHESCVLSLKFAYCGKWFVSTGKD---- 654 (705)
T ss_pred hhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccce-eecccccEEEEEEecccCceeeecCch----
Confidence 999977655432 34778889999999999999999888777653222 122289999999999999999987643
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
+-+..|...-|..++..+ ....|.++.+|.|.++|+||+.|
T Consensus 655 -------------------------------------nlLnawrtPyGasiFqsk--E~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 655 -------------------------------------NLLNAWRTPYGASIFQSK--ESSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred -------------------------------------hhhhhccCccccceeecc--ccCcceeeeeccCceEEEecCCC
Confidence 335556666666555554 56789999999999999999999
Q ss_pred CcEEEEeC
Q 000085 2308 KQLIVFTD 2315 (2342)
Q Consensus 2308 GsIrVWDi 2315 (2342)
..-.||.+
T Consensus 696 kkATVYeV 703 (705)
T KOG0639|consen 696 KKATVYEV 703 (705)
T ss_pred cceEEEEE
Confidence 99998873
No 100
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.76 E-value=3.8e-18 Score=195.98 Aligned_cols=223 Identities=16% Similarity=0.188 Sum_probs=178.2
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
.+..|+.++.|.+|++||.+++|||.|..|+|.|+......... . .+..+..+ .-...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~--------~---------em~~~~~q-----a~hPv 164 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKP--------K---------EMISGDTQ-----ARHPV 164 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcch--------h---------hhccCCcc-----cCCce
Confidence 45679999999999999999999999999999999852111000 0 00000000 00134
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE---e-cCCcEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL---V-GVDAHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL---~-gh~vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
+.+++.|.++|+++.|+|....+++|+.|++|+++|...-...+.+ . .+.+.+++|+|.|.+++.+..-..+++|+
T Consensus 165 IRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYd 244 (430)
T KOG0640|consen 165 IRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYD 244 (430)
T ss_pred EeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEe
Confidence 7789999999999999999999999999999999999754433322 2 25589999999999999999999999999
Q ss_pred eCCceeeeecC---CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCC
Q 000085 2189 LNGVLVARAKL---PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSP 2265 (2342)
Q Consensus 2189 lnG~~L~s~~~---~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DG 2265 (2342)
++....-.... .|.+.|+++.+++.|+..++|+. ||
T Consensus 245 v~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk-----------------------------------------DG 283 (430)
T KOG0640|consen 245 VNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK-----------------------------------------DG 283 (430)
T ss_pred ccceeEeeecCcccccccceeEEEecCCccEEEEecc-----------------------------------------CC
Confidence 98543222222 29999999999999999999974 67
Q ss_pred eEEEEECCCCeEEEEEecCCCC-CeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2266 SICFLDLHTLKVFHVLKLGEGQ-DITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2266 sIrIWDL~Tgk~L~tL~lgHs~-~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.|++||--+++|+.++...|++ .|++..|+.+|++|++.|.|..+++|.+.+.
T Consensus 284 ~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 284 AIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred cEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 7999999999999999878864 6999999999999999999999999996654
No 101
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.76 E-value=5.3e-17 Score=184.68 Aligned_cols=206 Identities=17% Similarity=0.224 Sum_probs=175.8
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
.++||..+++.+.++.+|.+|+||+.|.+..||--.+| ..
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG----------------------------------------er 44 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG----------------------------------------ER 44 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC----------------------------------------ce
Confidence 36899999999999999999999999999999987664 23
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeCC-----CeEEE
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQ-----HTLSS 2186 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwdssd-----GsI~I 2186 (2342)
+.++.||++.|+|++++.+.+.++||+.|.++++||+.+|+++.+++.. .+..+.|+.+|++++....+ +.|.+
T Consensus 45 lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~ 124 (327)
T KOG0643|consen 45 LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSV 124 (327)
T ss_pred eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEE
Confidence 5567999999999999999999999999999999999999999999864 47899999999998887543 57888
Q ss_pred EEeC-------CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCC
Q 000085 2187 FTLN-------GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2187 ~dln-------G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ 2259 (2342)
|++. +.........+...++.+.|.|-+++|++|..
T Consensus 125 fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe------------------------------------- 167 (327)
T KOG0643|consen 125 FDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE------------------------------------- 167 (327)
T ss_pred EEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC-------------------------------------
Confidence 9886 22211122237789999999999999999852
Q ss_pred ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2260 FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2260 ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
||.|.+||+.+++.+..-...|+..|+.+++++|..++++++.|.+-++||...+.
T Consensus 168 ----~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 168 ----DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred ----CCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecccee
Confidence 67899999999865544433899999999999999999999999999999987774
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=1.3e-16 Score=192.14 Aligned_cols=277 Identities=14% Similarity=0.144 Sum_probs=197.4
Q ss_pred eeecCCCeEEecCCCceEEEecCCCCCCC-ccccccc-------ceecc-ccCcceeEEEEEcCCCCEEEEEEcCCcEEE
Q 000085 1952 FLFQHGKASASPASGTFLRMFKGPGGSGA-DEWHFPR-------ALAFA-SSGIRSSAVVSITHDKEIITGGHVDGSIKL 2022 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tIRVwdg~tgs~~-~ew~~p~-------sls~h-s~gI~Svt~VafSpDGklLASGS~DGsIrV 2022 (2342)
++.++++++.+++.+++|--|+..++... .-|.-+. .+..+ ..++.-+.++++|+||++||+|+.|..|.|
T Consensus 149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~I 228 (479)
T KOG0299|consen 149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQI 228 (479)
T ss_pred EeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEE
Confidence 44456677777888888888876664432 1111110 01112 256667788999999999999999999999
Q ss_pred EecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCC
Q 000085 2023 LTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASAD 2102 (2342)
Q Consensus 2023 WDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D 2102 (2342)
|+.++.+.++.+.+|.+.|.+++|-..-..|+++|.|++|++|+++...
T Consensus 229 w~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s------------------------------- 277 (479)
T KOG0299|consen 229 WDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS------------------------------- 277 (479)
T ss_pred ecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-------------------------------
Confidence 9999999999999999999999999888899999999999999998742
Q ss_pred CccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeC
Q 000085 2103 KSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKL 2180 (2342)
Q Consensus 2103 ~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdss 2180 (2342)
.+.++.||++.|..+....-.+.+-.|+.|+++++|++... ..-.+.+++ +.+++|=.+.+ ++.++.
T Consensus 278 ---------~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~H-fvsGSd 346 (479)
T KOG0299|consen 278 ---------YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDEH-FVSGSD 346 (479)
T ss_pred ---------HHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecccc-eeeccC
Confidence 23457899999999998877777777779999999999432 223344443 44454443333 334455
Q ss_pred CCeEEEEEeCC-ceeeeecCC-----------CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccc
Q 000085 2181 QHTLSSFTLNG-VLVARAKLP-----------LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFD 2248 (2342)
Q Consensus 2181 dGsI~I~dlnG-~~L~s~~~~-----------Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFs 2248 (2342)
+|.|.+|++-. +++...... +..+|++++..|...++++|+.
T Consensus 347 nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~-------------------------- 400 (479)
T KOG0299|consen 347 NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW-------------------------- 400 (479)
T ss_pred CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCC--------------------------
Confidence 55555555431 222221111 3348999999999999998873
Q ss_pred cccccccCCCCccCCCCeEEEEECCCC----eEEEEEecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEE
Q 000085 2249 LASDQSVDNNRFDFPSPSICFLDLHTL----KVFHVLKLGEGQDITALALNKDNTNLLVS-TADKQLIVF 2313 (2342)
Q Consensus 2249 pd~~~s~ss~~ias~DGsIrIWDL~Tg----k~L~tL~lgHs~~ItsLafSPDG~~LaSG-SsDGsIrVW 2313 (2342)
+|.|++|-+..+ +++..+. -.+-|++++|+++|++|++| +....+-=|
T Consensus 401 ---------------~G~vrLW~i~~g~r~i~~l~~ls--~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 401 ---------------SGCVRLWKIEDGLRAINLLYSLS--LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ---------------CCceEEEEecCCccccceeeecc--cccEEEEEEEccCCCEEEEeccccccccee
Confidence 567888887765 4555555 56789999999999977776 444444444
No 103
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=5.3e-17 Score=207.35 Aligned_cols=243 Identities=19% Similarity=0.258 Sum_probs=175.3
Q ss_pred cceecc-cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC---------CCCCCccccccC---CCCCc
Q 000085 2030 TLETAS-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE---------PSSGMGTPGNSI---GSSTP 2096 (2342)
Q Consensus 2030 ll~tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~---------~~~~V~svs~Sp---DG~~L 2096 (2342)
..+.+. .|.+.|+|+.||+||+||||||.||.|+||.+............ ....+..+..+. .++..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 344556 89999999999999999999999999999999763211000000 000000000000 00000
Q ss_pred --------eeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEE
Q 000085 2097 --------ANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVS 2167 (2342)
Q Consensus 2097 --------as~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLS 2167 (2342)
..............+|++.+.||.+.|..+.||. .++|+|+|.|.||++|++....|++.|.+.. +++++
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVa 416 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVA 416 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEE
Confidence 0000000011122578899999999999999996 4579999999999999999999999998766 89999
Q ss_pred Eec-CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccc
Q 000085 2168 LSS-EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTED 2246 (2342)
Q Consensus 2168 fSp-DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ia 2246 (2342)
|.| |.++++.+.-|+.+++|++....+....- ...-|++++|+|||++.++|+.
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~------------------------ 471 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF------------------------ 471 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe------------------------
Confidence 999 67899999999999999998765543222 3478999999999999999974
Q ss_pred cccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCC-------CCCeEEEEEecCC-CEEEEEeCCCcEEEEeC
Q 000085 2247 FDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGE-------GQDITALALNKDN-TNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2247 Fspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgH-------s~~ItsLafSPDG-~~LaSGSsDGsIrVWDi 2315 (2342)
+|.+++|+....+........+ ...|+++.|.|.. ..|++.+.|..|+|+|.
T Consensus 472 -----------------~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 472 -----------------NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred -----------------ccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 4667888887776655543211 2279999999744 45889999999999995
No 104
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=5e-17 Score=197.01 Aligned_cols=238 Identities=16% Similarity=0.164 Sum_probs=196.2
Q ss_pred ceeEEEEEcCCCC--EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 1997 RSSAVVSITHDKE--IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1997 ~Svt~VafSpDGk--lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
.+++.++|+|... +.+++ .-.+.||+..+....+++....+.|.++.|..||++|+.|...|.|+|+|..+.
T Consensus 27 ~~vssl~fsp~~P~d~aVt~--S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r---- 100 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTS--SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR---- 100 (487)
T ss_pred CcceeEecCCCCCCceEEec--ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH----
Confidence 4567799999765 44444 467999999888888888888999999999999999999999999999996552
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCe
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
..+..+++|+.+|..+.|+|+ +..+++|+.|+.+++||+.+..
T Consensus 101 ------------------------------------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~ 144 (487)
T KOG0310|consen 101 ------------------------------------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY 144 (487)
T ss_pred ------------------------------------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE
Confidence 123456899999999999986 5567899999999999999998
Q ss_pred EEEEEecCC--cEEEEEecC-CcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCC
Q 000085 2154 LIRRLVGVD--AHAVSLSSE-GVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGS 2230 (2342)
Q Consensus 2154 lIrsL~gh~--vssLSfSpD-G~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i 2230 (2342)
....+.+|+ +++.+++|. +.+++.++.||.|++|+.....-....+.|..+|..+.+-|.|..+++++
T Consensus 145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg--------- 215 (487)
T KOG0310|consen 145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG--------- 215 (487)
T ss_pred EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC---------
Confidence 766888887 677888775 56899999999999999875433333455999999999999999999875
Q ss_pred cccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 000085 2231 YDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQL 2310 (2342)
Q Consensus 2231 ~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsI 2310 (2342)
-+.|+|||+.+|..+-.....|...|+|+++..+++.|++|+-||.+
T Consensus 216 ---------------------------------Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~V 262 (487)
T KOG0310|consen 216 ---------------------------------GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHV 262 (487)
T ss_pred ---------------------------------CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccce
Confidence 24699999996544443332599999999999999999999999999
Q ss_pred EEEeCCCC
Q 000085 2311 IVFTDPAL 2318 (2342)
Q Consensus 2311 rVWDi~sL 2318 (2342)
+||+..+.
T Consensus 263 KVfd~t~~ 270 (487)
T KOG0310|consen 263 KVFDTTNY 270 (487)
T ss_pred EEEEccce
Confidence 99996554
No 105
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.2e-17 Score=188.38 Aligned_cols=280 Identities=14% Similarity=0.126 Sum_probs=198.3
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc-cc--ccCCCCCCccccccCCCCCceeecCCCccc--
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR-TG--TIEPSSGMGTPGNSIGSSTPANASADKSRR-- 2106 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~-t~--~~~~~~~V~svs~SpDG~~Las~s~D~s~~-- 2106 (2342)
.+++||.+.|+|++|+.||++|+|++.|++|+||+++...... .. ....-...+.+.|+||.+.+++....+...
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 4689999999999999999999999999999999998743211 11 111223456778899888776555443322
Q ss_pred ccc-----C---------CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEec
Q 000085 2107 RRI-----E---------GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSS 2170 (2342)
Q Consensus 2107 ~~i-----~---------~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSp 2170 (2342)
+.. + .....-..|.-.|..+-+..++.+|+|++.|.+|.+||++ |+.+.++.... .+..++||
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 111 0 0111223466677777777788999999999999999998 99999987654 67889999
Q ss_pred CCcEEEEEeCCCeEEEEEeC----Ccee--e--eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCC
Q 000085 2171 EGVIMTWNKLQHTLSSFTLN----GVLV--A--RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS 2242 (2342)
Q Consensus 2171 DG~IlVwdssdGsI~I~dln----G~~L--~--s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~ 2242 (2342)
+|++++...-+-.+.+|.+- |... . -...+|...|..++|+++.+.+++.+.||....|..+-.+.......
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence 99999988888888888862 3211 1 11234999999999999999999999999955444432222221110
Q ss_pred ----C------------ccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2243 ----G------------TEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2243 ----~------------~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs 2306 (2342)
+ .+..+|+..... ......+.++..++++....+...|+..|.+++|+++|++++++|
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA-----~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG- 392 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLELSPSGDSLA-----VSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG- 392 (420)
T ss_pred HhhcCCcchhhcCCCceEEEeCCCCcEEE-----eecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-
Confidence 0 011222222111 113457999999999988888878999999999999999999887
Q ss_pred CCcEEEEe-CCCC
Q 000085 2307 DKQLIVFT-DPAL 2318 (2342)
Q Consensus 2307 DGsIrVWD-i~sL 2318 (2342)
|..++|+. .++.
T Consensus 393 dr~vrv~~ntpg~ 405 (420)
T KOG2096|consen 393 DRYVRVIRNTPGW 405 (420)
T ss_pred ceeeeeecCCCch
Confidence 67788887 4444
No 106
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.9e-16 Score=202.24 Aligned_cols=265 Identities=17% Similarity=0.188 Sum_probs=210.0
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
-++|..|.++++|+.||+|+.... -..|..+..+ .....++..++..|++|+.+++|.+|...+++.-..
T Consensus 22 d~~gefi~tcgsdg~ir~~~~~sd-----~e~P~ti~~~-----g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~i 91 (933)
T KOG1274|consen 22 DPDGEFICTCGSDGDIRKWKTNSD-----EEEPETIDIS-----GELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTI 91 (933)
T ss_pred cCCCCEEEEecCCCceEEeecCCc-----ccCCchhhcc-----CceeEEEeecccceEEeeccceEEEeeCCCCCccce
Confidence 356788899999999999985441 1234444322 223355666777999999999999999999887777
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
+...+-++++++|+.+|++++.||.|-.|++-+..+. ...
T Consensus 92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~----------------------------------------s~~ 131 (933)
T KOG1274|consen 92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS----------------------------------------SQE 131 (933)
T ss_pred eeeeeccceEEEEecCCcEEEeecCceeEEEEecccc----------------------------------------chh
Confidence 7777889999999999999999999999999998874 234
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC----------cEEEEEecCCcEEEEEeCCCe
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD----------AHAVSLSSEGVIMTWNKLQHT 2183 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~----------vssLSfSpDG~IlVwdssdGs 2183 (2342)
..+.+|.++|.++.|+|++.+||+.+-||.|+|||+.++.+..++.+-. ...++|+|+|..++.-..++.
T Consensus 132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT 211 (933)
T ss_pred eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence 5689999999999999999999999999999999999999888776521 356899999777777778899
Q ss_pred EEEEEeCCceeeeecCC--CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCcc
Q 000085 2184 LSSFTLNGVLVARAKLP--LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFD 2261 (2342)
Q Consensus 2184 I~I~dlnG~~L~s~~~~--Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ia 2261 (2342)
|.+|+..+......... +...+.++.|+|+|+||++++.
T Consensus 212 Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~--------------------------------------- 252 (933)
T KOG1274|consen 212 VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL--------------------------------------- 252 (933)
T ss_pred EEEEccCCceeheeecccccccceEEEEEcCCCcEEeeecc---------------------------------------
Confidence 99999987655443333 4445999999999999998862
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2262 FPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2262 s~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
||.|.|||+.+.+. + .....|++++|.|++.-|-.-...|...+|-
T Consensus 253 --~g~I~vWnv~t~~~-~----~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 253 --DGQILVWNVDTHER-H----EFKRAVCCEAWKPNANAITLITALGTLGVSP 298 (933)
T ss_pred --CCcEEEEecccchh-c----cccceeEEEecCCCCCeeEEEeeccccccCh
Confidence 67899999998432 1 2346899999999987666555556555554
No 107
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3.7e-17 Score=184.97 Aligned_cols=233 Identities=15% Similarity=0.181 Sum_probs=182.2
Q ss_pred EEEEEcCCCC-EEEEEEcCCcEEEEecCC-cccceecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 2000 AVVSITHDKE-IITGGHVDGSIKLLTSDG-AKTLETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2000 t~VafSpDGk-lLASGS~DGsIrVWDl~t-gkll~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
.-++|++... .+++++.||++++||+.. ..+++.++.|...|.++.|++ ++..++++|.|+||++|+....
T Consensus 64 fdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~------ 137 (311)
T KOG0277|consen 64 FDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP------ 137 (311)
T ss_pred eEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC------
Confidence 3488888765 777788899999999643 457889999999999999998 4567888899999999998764
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLI 2155 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklI 2155 (2342)
..+.++.||...|...+|+|. .++++++|.||++++||++.....
T Consensus 138 ----------------------------------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~ 183 (311)
T KOG0277|consen 138 ----------------------------------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF 183 (311)
T ss_pred ----------------------------------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce
Confidence 235668999999999999985 789999999999999999864433
Q ss_pred EEEecCC--cEEEEEec-CCcEEEEEeCCCeEEEEEeCCc--eeeeecCCCCCCeEEEEEccCCCEE-EEEeCCCCCCCC
Q 000085 2156 RRLVGVD--AHAVSLSS-EGVIMTWNKLQHTLSSFTLNGV--LVARAKLPLSGSIGCMEISLDGHSA-LIGVNSSSTNNG 2229 (2342)
Q Consensus 2156 rsL~gh~--vssLSfSp-DG~IlVwdssdGsI~I~dlnG~--~L~s~~~~Hs~~ItsLafSPDGk~L-aSGS~DGs~d~~ 2229 (2342)
..+..|. +.++.|+. +..+++.+..++.|+.|++..- ++.. ..+|.-.|..+.|||...-+ ++++
T Consensus 184 ~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e-L~gh~~AVRkvk~Sph~~~lLaSas-------- 254 (311)
T KOG0277|consen 184 MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE-LNGHGLAVRKVKFSPHHASLLASAS-------- 254 (311)
T ss_pred eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccccee-ecCCceEEEEEecCcchhhHhhhcc--------
Confidence 3477775 44444554 4567778888999999998642 2222 24599999999999975444 3332
Q ss_pred CcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe-EEEEEecCCCCCeEEEEEec-CCCEEEEEeCC
Q 000085 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK-VFHVLKLGEGQDITALALNK-DNTNLLVSTAD 2307 (2342)
Q Consensus 2230 i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk-~L~tL~lgHs~~ItsLafSP-DG~~LaSGSsD 2307 (2342)
.|-+++|||..... ++.+.. .|+.-|..+.||+ +..++++++.|
T Consensus 255 ---------------------------------YDmT~riw~~~~~ds~~e~~~-~HtEFv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 255 ---------------------------------YDMTVRIWDPERQDSAIETVD-HHTEFVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred ---------------------------------ccceEEecccccchhhhhhhh-ccceEEeccccccccCceeeecccc
Confidence 26779999987543 444555 7888999999998 66789999999
Q ss_pred CcEEEEeC
Q 000085 2308 KQLIVFTD 2315 (2342)
Q Consensus 2308 GsIrVWDi 2315 (2342)
+.++||+.
T Consensus 301 e~l~Vw~p 308 (311)
T KOG0277|consen 301 ELLYVWNP 308 (311)
T ss_pred cceeeecc
Confidence 99999983
No 108
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.6e-16 Score=190.99 Aligned_cols=278 Identities=13% Similarity=0.179 Sum_probs=212.4
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCc--ccceecccCCCCeEEEEecCCCC-EEEEEeCCCceEEEeccCCcccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGA--KTLETASGHCAPVTCLALSSDSN-FLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tg--kll~tL~GHt~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
.++++.|+|...++.+++.|++++||.++.. ..++.+.--..+|.+++|.|+|. .+++++.-.....||+.+.+...
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK 294 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence 3456999999999999999999999998753 45666666678999999999999 89999999999999998865433
Q ss_pred cc--ccCCCCCCccccccCCCCCceeecCCCccc-c--ccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 000085 2075 TG--TIEPSSGMGTPGNSIGSSTPANASADKSRR-R--RIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSI 2149 (2342)
Q Consensus 2075 t~--~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~--~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDL 2149 (2342)
.. .......+.....++++++++..+..+... . .+...+..++ -.+.|..++|+.+++.|+.++.+|.|.+||+
T Consensus 295 ~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 295 LKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNL 373 (514)
T ss_pred ccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEec
Confidence 22 111233566677889999887776655322 1 1122233332 3578999999999999999999999999999
Q ss_pred CCCeEEEEEecCC---cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecC------CCCCCeEEEEEccCCCEEEEE
Q 000085 2150 RRGRLIRRLVGVD---AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKL------PLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2150 rTGklIrsL~gh~---vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~------~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
++..+++++...+ .+.+|.|.+|.+++.++..|.|.+|+.+......... .-...|+++.|++|++.|+.+
T Consensus 374 ~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAia 453 (514)
T KOG2055|consen 374 RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIA 453 (514)
T ss_pred CCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhh
Confidence 9999999987654 5788999999999999999999999965322211111 145689999999999999988
Q ss_pred eCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC--CCCCeEEEEEecCC
Q 000085 2221 VNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG--EGQDITALALNKDN 2298 (2342)
Q Consensus 2221 S~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg--Hs~~ItsLafSPDG 2298 (2342)
|.- .+..+++-.+.+......++.. .-+.|+|++|||.+
T Consensus 454 S~~---------------------------------------~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 454 SRV---------------------------------------KKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS 494 (514)
T ss_pred hhc---------------------------------------cccceEEEeccceeeeccCCCCCCcccceEEEEecCCC
Confidence 621 1345666666665555555421 12468999999999
Q ss_pred CEEEEEeCCCcEEEEeC
Q 000085 2299 TNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2299 ~~LaSGSsDGsIrVWDi 2315 (2342)
.+|+.|..+|.+.+|.+
T Consensus 495 G~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 495 GYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ceEEeecCCCceeeEee
Confidence 99999999999999984
No 109
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2e-16 Score=183.72 Aligned_cols=259 Identities=15% Similarity=0.183 Sum_probs=194.9
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
++.+.|+|.+..|++++|||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~------- 86 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN------- 86 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc-------
Confidence 455999999999999999999999999887555554 4999999999985 5789999999999999999852
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL 2158 (2342)
...+..|...|.|+..++....+++||.|++|++||.+......++
T Consensus 87 ----------------------------------~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~ 132 (323)
T KOG1036|consen 87 ----------------------------------EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF 132 (323)
T ss_pred ----------------------------------ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc
Confidence 2235679999999999998899999999999999999985555555
Q ss_pred ecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCce--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccc--
Q 000085 2159 VGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL--VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNI-- 2234 (2342)
Q Consensus 2159 ~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~--L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~L-- 2234 (2342)
.... ...+.+-.|..++.++.+..+.+|++.... .........-.+.|+++-|++.-.++++.+|.......+.-
T Consensus 133 d~~k-kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~ 211 (323)
T KOG1036|consen 133 DQGK-KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEE 211 (323)
T ss_pred ccCc-eEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchH
Confidence 4333 566778889999999999999999986422 21111225678999999999888888887765322211100
Q ss_pred -----cccCCC-----------CCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC
Q 000085 2235 -----QGLNSK-----------QSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN 2298 (2342)
Q Consensus 2235 -----w~l~~~-----------~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG 2298 (2342)
+.++-+ ..+.+.|+|-......+ ..||.|.+||+.+.+.+..+. .....|.+++|+.||
T Consensus 212 ~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTg----GsDG~V~~Wd~~~rKrl~q~~-~~~~SI~slsfs~dG 286 (323)
T KOG1036|consen 212 AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATG----GSDGIVNIWDLFNRKRLKQLA-KYETSISSLSFSMDG 286 (323)
T ss_pred HhhhceeEEeeecccCCceEEEEeceeEeccccceEEec----CCCceEEEccCcchhhhhhcc-CCCCceEEEEeccCC
Confidence 000000 12334555543333333 359999999999999888887 556679999999999
Q ss_pred CEEEEEeC
Q 000085 2299 TNLLVSTA 2306 (2342)
Q Consensus 2299 ~~LaSGSs 2306 (2342)
..||+++.
T Consensus 287 ~~LAia~s 294 (323)
T KOG1036|consen 287 SLLAIASS 294 (323)
T ss_pred CeEEEEec
Confidence 99998863
No 110
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.74 E-value=1.1e-15 Score=184.64 Aligned_cols=308 Identities=15% Similarity=0.212 Sum_probs=221.3
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
|.+..++....-+.+.+|...++...... -.|....-.-|.|++|.++|.. ++|..+|.|.||+..+.+..+..
T Consensus 210 Ptd~nliit~Gk~H~~Fw~~~~~~l~k~~-----~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~~~k~~ 283 (626)
T KOG2106|consen 210 PTDPNLIITCGKGHLYFWTLRGGSLVKRQ-----GIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKGTNRISKQV 283 (626)
T ss_pred cCCCcEEEEeCCceEEEEEccCCceEEEe-----eccccccceEEEEEEEcCCCCE-EeecCCceEEEEeCCCceEEeEe
Confidence 34444444455568889976653322111 1111112256889999999985 56788999999999888887777
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc-ccCCCCCCccccccCCCCCceeecCCC-cccccc-CC
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG-TIEPSSGMGTPGNSIGSSTPANASADK-SRRRRI-EG 2111 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i-~~ 2111 (2342)
..|.+.|.|++.-.+|. |+||+.|+.|..||-.- ...+.. ..+..+.+..++-...+ +.++...+ +..-.+ ..
T Consensus 284 ~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y-~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 284 HAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNY-RKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENG 359 (626)
T ss_pred eecCCceEEEEEecCcc-EeecCccceEEeccccc-cccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCC
Confidence 79999999999998886 45599999999999332 222222 33334444444433222 33333222 222222 23
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE-EecCCcEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR-LVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs-L~gh~vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
......+|.+..+.++.+|+..+++|++.|+.+++|+ ..++..+ +...+..++.|.|.| .++.+...|...+++..
T Consensus 360 f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e 436 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTE 436 (626)
T ss_pred ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecc
Confidence 4556789999999999999999999999999999999 4444443 334567899999999 88888899998888887
Q ss_pred CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2191 GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2191 G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
.+.+...... ..++++|.|+|+|.+++.|+. |+.|+||
T Consensus 437 ~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~-----------------------------------------d~~iyiy 474 (626)
T KOG2106|consen 437 TQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSH-----------------------------------------DNHIYIY 474 (626)
T ss_pred cceeEEEEec-CCceEEEEEcCCCCEEEEecC-----------------------------------------CCeEEEE
Confidence 6655555444 889999999999999999973 6678888
Q ss_pred ECCC-CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2271 DLHT-LKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2271 DL~T-gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
-+.. +.....+...|.++|+.+.||+|+++|.+-+.|-.|..| .++.
T Consensus 475 ~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW-~~~~ 522 (626)
T KOG2106|consen 475 RVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW-KPSE 522 (626)
T ss_pred EECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE-cccc
Confidence 8754 444444443566899999999999999999999999999 4544
No 111
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=4.6e-18 Score=211.75 Aligned_cols=227 Identities=20% Similarity=0.275 Sum_probs=199.4
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
.|+.+-..++.+++|++|..+-+|.+.....+..+.+|..+|.|+.|+++..+|++|+.||+|++||+..+.
T Consensus 32 ~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk-------- 103 (825)
T KOG0267|consen 32 GCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK-------- 103 (825)
T ss_pred ceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh--------
Confidence 345556677899999999999999998777778899999999999999999999999999999999998753
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
.+++|.||...+..|.|+|-+.+.++|+.|+.+++||++...|.+.+.
T Consensus 104 --------------------------------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~ 151 (825)
T KOG0267|consen 104 --------------------------------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK 151 (825)
T ss_pred --------------------------------hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec
Confidence 344678999999999999999999999999999999999888999998
Q ss_pred cCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccccc
Q 000085 2160 GVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGL 2237 (2342)
Q Consensus 2160 gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l 2237 (2342)
+|. +.++.|+|+|++++-+..+..+++|+.....+...+..|.+.|.++.|+|..-.+++|+
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs---------------- 215 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS---------------- 215 (825)
T ss_pred CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC----------------
Confidence 875 78899999999999999999999999975555555566999999999999888887775
Q ss_pred CCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2238 NSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2238 ~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG 2308 (2342)
.|+++++||+++.+.+.... ....+|.++.|+|++..+++|..+.
T Consensus 216 -------------------------~d~tv~f~dletfe~I~s~~-~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 216 -------------------------SDRTVRFWDLETFEVISSGK-PETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred -------------------------CCceeeeeccceeEEeeccC-CccCCceeeeecCCceeeecCchhh
Confidence 27889999999999888877 5678899999999999888886543
No 112
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.73 E-value=4.9e-17 Score=186.93 Aligned_cols=270 Identities=15% Similarity=0.175 Sum_probs=222.6
Q ss_pred ceeecCCCeEEecCCCceEEEecCCCCCCCccccc--ccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc
Q 000085 1951 PFLFQHGKASASPASGTFLRMFKGPGGSGADEWHF--PRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA 2028 (2342)
Q Consensus 1951 ~flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~--p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg 2028 (2342)
...-|+|.++++++-|+.|.+|+-.+|....+..+ .+.+-++. ..|.|++||.|...+|+|+.||.|+||.+.+|
T Consensus 219 A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd---~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG 295 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD---DAVLCISFSRDSEMLASGSQDGKIKVWRIETG 295 (508)
T ss_pred eeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecc---cceEEEeecccHHHhhccCcCCcEEEEEEecc
Confidence 34457899999999999999999877655444433 23333333 34677999999999999999999999999999
Q ss_pred ccceecc-cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcc-c
Q 000085 2029 KTLETAS-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSR-R 2106 (2342)
Q Consensus 2029 kll~tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~-~ 2106 (2342)
.+++.+. .|+..|+|+.||.|+..+.++|.|.+++|.-+..|++...+ .+|...+....|++||..+.+++.|+.. .
T Consensus 296 ~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkv 374 (508)
T KOG0275|consen 296 QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKV 374 (508)
T ss_pred hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh-cCccccccceEEcCCCCeEEEecCCccEEE
Confidence 9999997 89999999999999999999999999999999999877665 6788889999999999999999988764 4
Q ss_pred ccc--CCceEEec--CCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEecC-----CcEEEEEecCCcEEE
Q 000085 2107 RRI--EGPIHVLR--GHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-----DAHAVSLSSEGVIMT 2176 (2342)
Q Consensus 2107 ~~i--~~~l~~L~--GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh-----~vssLSfSpDG~IlV 2176 (2342)
|.. ..++.+++ +.+.+|+.+-.-|. ...++.|...++|+|.++ .|+.++++... .-...+.||.|.++.
T Consensus 375 W~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiY 453 (508)
T KOG0275|consen 375 WHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIY 453 (508)
T ss_pred ecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEE
Confidence 654 34555554 34567888877764 567889999999999998 78899988642 235667899999999
Q ss_pred EEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2177 WNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2177 wdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
+-..++.++.|......+.....-|...|..++-+|..+.+++-+.||.
T Consensus 454 cigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgl 502 (508)
T KOG0275|consen 454 CIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGL 502 (508)
T ss_pred EEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccch
Confidence 9999999999998765666665569999999999999999998887776
No 113
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.73 E-value=4e-16 Score=197.26 Aligned_cols=308 Identities=14% Similarity=0.106 Sum_probs=227.1
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecc-c
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETAS-G 2036 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~-G 2036 (2342)
.++-|..+++|-+|+...+.....+..+ -..++.++|.-||+ ++|+|+..|.+.+||++..+.+..+. .
T Consensus 216 VVaiG~~~G~ViifNlK~dkil~sFk~d---------~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~na 286 (910)
T KOG1539|consen 216 VVAIGLENGTVIIFNLKFDKILMSFKQD---------WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA 286 (910)
T ss_pred EEEEeccCceEEEEEcccCcEEEEEEcc---------ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecc
Confidence 4555667778888886653333222211 12355699999998 88889889999999999888777665 7
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc---ccCCCCCCccc--------------------------
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG---TIEPSSGMGTP-------------------------- 2087 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~---~~~~~~~V~sv-------------------------- 2087 (2342)
|.+.|+...|.|....++|++.|+.+++|-.+++...... ..+|..+..++
T Consensus 287 h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~ 366 (910)
T KOG1539|consen 287 HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVIS 366 (910)
T ss_pred ccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhH
Confidence 9999999999999999999999999999976633211100 11111111111
Q ss_pred --------------------------------------------------------------------------------
Q 000085 2088 -------------------------------------------------------------------------------- 2087 (2342)
Q Consensus 2088 -------------------------------------------------------------------------------- 2087 (2342)
T Consensus 367 e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~ 446 (910)
T KOG1539|consen 367 ESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKK 446 (910)
T ss_pred HHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccc
Confidence
Q ss_pred --------cccCCCCCceeecCCCcc-ccccC--CceEEe---cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2088 --------GNSIGSSTPANASADKSR-RRRIE--GPIHVL---RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2088 --------s~SpDG~~Las~s~D~s~-~~~i~--~~l~~L---~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
+.++-|++...+...+.. +++.. -....+ ..|..+|+.++...-++.++|++.||.+++||..+..
T Consensus 447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence 111112211111111111 11111 111223 3688999999998888899999999999999999998
Q ss_pred EEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcc
Q 000085 2154 LIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYD 2232 (2342)
Q Consensus 2154 lIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d 2232 (2342)
++.++.. +.+..+..+....+++....+-.|.++|.....+.+...+|.+.|++++|||||++|++++.
T Consensus 527 l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasm---------- 596 (910)
T KOG1539|consen 527 LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASM---------- 596 (910)
T ss_pred eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeec----------
Confidence 8888864 56777777877778888888889999999888888888889999999999999999999873
Q ss_pred cccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC-CcEE
Q 000085 2233 NIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD-KQLI 2311 (2342)
Q Consensus 2233 ~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD-GsIr 2311 (2342)
|++|++||+.++.++-.+. -..+++++.|||+|.+|+|...| ..|+
T Consensus 597 -------------------------------D~tIr~wDlpt~~lID~~~--vd~~~~sls~SPngD~LAT~Hvd~~gIy 643 (910)
T KOG1539|consen 597 -------------------------------DSTIRTWDLPTGTLIDGLL--VDSPCTSLSFSPNGDFLATVHVDQNGIY 643 (910)
T ss_pred -------------------------------CCcEEEEeccCcceeeeEe--cCCcceeeEECCCCCEEEEEEecCceEE
Confidence 6779999999999998876 56789999999999999999988 7899
Q ss_pred EEeCCCC
Q 000085 2312 VFTDPAL 2318 (2342)
Q Consensus 2312 VWDi~sL 2318 (2342)
+|....+
T Consensus 644 lWsNksl 650 (910)
T KOG1539|consen 644 LWSNKSL 650 (910)
T ss_pred EEEchhH
Confidence 9985443
No 114
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.73 E-value=1.1e-16 Score=193.49 Aligned_cols=267 Identities=15% Similarity=0.091 Sum_probs=196.0
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc---
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL--- 2031 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll--- 2031 (2342)
+.|.++++|+-|.+|++|+-..-... ...-+.+ .....+.++++.|++.|..|++.+....++|+|-+.....
T Consensus 177 p~GaR~~sGs~Dy~v~~wDf~gMdas--~~~fr~l--~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~ 252 (641)
T KOG0772|consen 177 PSGARFVSGSLDYTVKFWDFQGMDAS--MRSFRQL--QPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFS 252 (641)
T ss_pred CCCceeeeccccceEEEEeccccccc--chhhhcc--CcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeee
Confidence 56888999999999999985541111 1111111 1222234556999999998877777888999997654332
Q ss_pred ---------eecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCcccccc-----ccCCCCCCccccccCCCCCc
Q 000085 2032 ---------ETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTG-----TIEPSSGMGTPGNSIGSSTP 2096 (2342)
Q Consensus 2032 ---------~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~-----~~~~~~~V~svs~SpDG~~L 2096 (2342)
..-+||...++|.+|+|+. ..++|+|.||+++|||+...+..... ..+....+..++|++||..+
T Consensus 253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~i 332 (641)
T KOG0772|consen 253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLI 332 (641)
T ss_pred ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchh
Confidence 2347899999999999974 67999999999999999875432221 33455678899999999999
Q ss_pred eeecCCCc-cccccC-----CceEEecCCCC--CeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eEEEEEec----CCc
Q 000085 2097 ANASADKS-RRRRIE-----GPIHVLRGHHR--EILCCCVSSDLGVVVSCSDSSDLLLHSIRRG-RLIRRLVG----VDA 2163 (2342)
Q Consensus 2097 as~s~D~s-~~~~i~-----~~l~~L~GHs~--~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG-klIrsL~g----h~v 2163 (2342)
+.+..|+. ..|+.+ ...+.-..|.. .|+||.||+||++|+|-+.|+++++||++.. +++....+ ...
T Consensus 333 Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~ 412 (641)
T KOG0772|consen 333 AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPG 412 (641)
T ss_pred hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCC
Confidence 99988876 446643 23445567877 9999999999999999999999999999874 45554443 236
Q ss_pred EEEEEecCCcEEEEEeC------CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2164 HAVSLSSEGVIMTWNKL------QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2164 ssLSfSpDG~IlVwdss------dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
+.++|||+.++++.+.. .|.+.+|+...-.......-....|..+.|+|-=+.+++|+.+|.
T Consensus 413 tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 413 TDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred CccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCc
Confidence 78999999999998743 366777776543222222224678899999999888888887766
No 115
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2e-16 Score=198.41 Aligned_cols=250 Identities=18% Similarity=0.229 Sum_probs=202.8
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~ 2081 (2342)
+.|+ ..+.|+.|. ...|++|+..+++.......+.+.|+++.|+++|.+|+.|..+|+|.|||......+
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~-------- 252 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT-------- 252 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc--------
Confidence 6677 344666664 568999999999877666666899999999999999999999999999999875332
Q ss_pred CCCccccccCCCCCceeecCCCccccccCCceEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE-Ee
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG-HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR-LV 2159 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G-Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs-L~ 2159 (2342)
..+.+ |...|-|++|. +..+.+|+.||.|..+|++..+.... +.
T Consensus 253 --------------------------------~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~ 298 (484)
T KOG0305|consen 253 --------------------------------RTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQ 298 (484)
T ss_pred --------------------------------ccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhh
Confidence 23345 99999999997 77899999999999999998776554 66
Q ss_pred cCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCCCCCCCcccccc
Q 000085 2160 GVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISL-DGHSALIGVNSSSTNNGSYDNIQG 2236 (2342)
Q Consensus 2160 gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP-DGk~LaSGS~DGs~d~~i~d~Lw~ 2236 (2342)
+|. +..+.|++|+..++.+..|+.+.+|+............|...|.+++|+| ....||+|+ |+
T Consensus 299 ~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG--Gs----------- 365 (484)
T KOG0305|consen 299 GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG--GS----------- 365 (484)
T ss_pred cccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC--CC-----------
Confidence 664 78899999999999999999999999976555555666999999999999 456777774 22
Q ss_pred cCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE--eCCCcEEEEe
Q 000085 2237 LNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS--TADKQLIVFT 2314 (2342)
Q Consensus 2237 l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG--SsDGsIrVWD 2314 (2342)
.|++|++||..+++.+..+. .+..|++|.|++..+-|+++ -.++.|.||+
T Consensus 366 --------------------------~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~ 417 (484)
T KOG0305|consen 366 --------------------------ADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYSENQITLWK 417 (484)
T ss_pred --------------------------cccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCCEEEEecCCCCCcEEEEe
Confidence 48999999999999998887 56789999999999777765 5678999999
Q ss_pred CCCCCh-----hhhhhhhhccccCCCc
Q 000085 2315 DPALSL-----KVVDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2315 i~sLs~-----k~LdQLLk~GWegDGL 2336 (2342)
.+++.. .-....+...|.+||=
T Consensus 418 ~ps~~~~~~l~gH~~RVl~la~SPdg~ 444 (484)
T KOG0305|consen 418 YPSMKLVAELLGHTSRVLYLALSPDGE 444 (484)
T ss_pred ccccceeeeecCCcceeEEEEECCCCC
Confidence 887641 1123456677888864
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=2.2e-16 Score=181.58 Aligned_cols=265 Identities=17% Similarity=0.243 Sum_probs=207.3
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEec------CC-----
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTS------DG----- 2027 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl------~t----- 2027 (2342)
.+.+++.|.+.++|..+++.. +....++..+|+++.|++.+.++++++.|++..||.. ..
T Consensus 162 i~gtASADhTA~iWs~Esg~C---------L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~ 232 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGAC---------LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPS 232 (481)
T ss_pred ceeecccccceeEEeeccccc---------eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCC
Confidence 456788999999999776433 3333556778888999999999999999999999961 10
Q ss_pred ---c--------------------------ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2028 ---A--------------------------KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2028 ---g--------------------------kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
+ .++..+.||.+.|.|..|-..|+.++|+|+|.|..+||++++
T Consensus 233 ~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg-------- 304 (481)
T KOG0300|consen 233 DHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG-------- 304 (481)
T ss_pred CCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC--------
Confidence 0 023467899999999999999999999999999999999986
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eEEEE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG-RLIRR 2157 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG-klIrs 2157 (2342)
.+++.+.||....+.++-+|..+++++.+.|.+.++||.+.. ..+..
T Consensus 305 --------------------------------e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~V 352 (481)
T KOG0300|consen 305 --------------------------------EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAV 352 (481)
T ss_pred --------------------------------ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeee
Confidence 345678999999999999999999999999999999999843 45667
Q ss_pred EecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCc--eeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccc
Q 000085 2158 LVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGV--LVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233 (2342)
Q Consensus 2158 L~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~--~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~ 2233 (2342)
|.+|. ++.+.|..|.+ ++.+..+.++++|++... ++..+. .+.+++.++++..+..++.-.
T Consensus 353 FQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPh------------ 417 (481)
T KOG0300|consen 353 FQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPH------------ 417 (481)
T ss_pred ecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeee--cCCccceeEeecCCceEEecc------------
Confidence 88875 67788887766 456778899999999753 233222 567788888876666665331
Q ss_pred ccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEE----ecCCCCCeEEEEEecCC--CEEEEEeCC
Q 000085 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVL----KLGEGQDITALALNKDN--TNLLVSTAD 2307 (2342)
Q Consensus 2234 Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL----~lgHs~~ItsLafSPDG--~~LaSGSsD 2307 (2342)
.+..|++||+.... +..+ ..+|...|+|++|..+. ..|+++|-|
T Consensus 418 -----------------------------DNRqvRlfDlnG~R-laRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFD 467 (481)
T KOG0300|consen 418 -----------------------------DNRQVRLFDLNGNR-LARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFD 467 (481)
T ss_pred -----------------------------CCceEEEEecCCCc-cccCCcccccccceeeeeeeccccCccccccccccc
Confidence 25689999996533 3333 24888999999998654 458999999
Q ss_pred CcEEEEeCCC
Q 000085 2308 KQLIVFTDPA 2317 (2342)
Q Consensus 2308 GsIrVWDi~s 2317 (2342)
..+.-|.+..
T Consensus 468 R~v~gW~in~ 477 (481)
T KOG0300|consen 468 RMVAGWKINT 477 (481)
T ss_pred ceeeeeEecc
Confidence 9999999543
No 117
>PF06469 DUF1088: Domain of Unknown Function (DUF1088); InterPro: IPR010508 This domain is found in the neurobeachins. The function of this region is not known.
Probab=99.71 E-value=9.4e-18 Score=181.05 Aligned_cols=107 Identities=24% Similarity=0.256 Sum_probs=92.4
Q ss_pred ccccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcceeE
Q 000085 1260 KDFNALSYKFIAVLVASFALARNMQRSEIDRRSQVDLISRHRWCTGMRAWRKLIHCLIEMKCLFGPFEDHLSDPRRIFWK 1339 (2342)
Q Consensus 1260 r~~~e~~~k~~~~~v~~~~lar~~~R~E~~r~~~l~~~~~~r~~~a~r~W~ki~~~Lt~ERGlwGPw~~~~~s~~~~fWK 1339 (2342)
|.+.+...|+.+|.+.|++++..++++|.++.+.+..+.+|...++.+.|+||.+.|++++|.|| ....+...+|||
T Consensus 26 r~raedv~kha~FE~~~aq~~~~~~eEe~~cdhli~AarrRD~~~a~~L~~Ki~~iLtn~~GaWg---~~~~~~~~~fWk 102 (169)
T PF06469_consen 26 RQRAEDVHKHAEFESLCAQTSADRREEERMCDHLIRAARRRDHVTASRLLRKILNILTNKHGAWG---DSSSSRPSEFWK 102 (169)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCCC---CccccCccceee
Confidence 45678889999999999999999998888777777777777777788999999999999996554 544455689999
Q ss_pred eeccCCccccceeecccCCCCCCccccccc
Q 000085 1340 LDFMESSSRMRRCLRRNYMGSDHFGAAANY 1369 (2342)
Q Consensus 1340 LD~tEd~sRMRrRLvRNy~fs~H~~Aaa~~ 1369 (2342)
||.|||++|||+||||||+|++|.+|+.+.
T Consensus 103 LD~WEDD~RRRrR~V~NP~GS~H~~Atlk~ 132 (169)
T PF06469_consen 103 LDYWEDDSRRRRRFVPNPYGSTHPEATLKA 132 (169)
T ss_pred ccccccchHHHHhcCCCCCCCcchHhHHhh
Confidence 999999999999999999999999999763
No 118
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.71 E-value=7.9e-16 Score=174.94 Aligned_cols=256 Identities=11% Similarity=0.078 Sum_probs=197.3
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCC-CEEEEEEcCCcEEEEecCCcccceec
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDK-EIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDG-klLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
+|..+++++.|+++++|+...+....++. ...|.. +|--++|+|.. ..+++++.|.+|++||...+++...+
T Consensus 31 ~g~~lasgs~dktv~v~n~e~~r~~~~~~----~~gh~~---svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i 103 (313)
T KOG1407|consen 31 DGTKLASGSFDKTVSVWNLERDRFRKELV----YRGHTD---SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI 103 (313)
T ss_pred cCceeeecccCCceEEEEecchhhhhhhc----ccCCCc---chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe
Confidence 57889999999999999976543333332 223333 33347777655 48999999999999999999999887
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc---cccccCC
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS---RRRRIEG 2111 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s---~~~~i~~ 2111 (2342)
....+.| -+.|+|+|++++.|+.|..|...|.++.+..... .....+.-++|+-++..+......+. ..+..-+
T Consensus 104 ~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk 180 (313)
T KOG1407|consen 104 ETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK 180 (313)
T ss_pred eccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehh--cccceeeeeeecCCCCEEEEecCCceEEEEeccccc
Confidence 7555544 5789999999999999999999999886544332 12233445556655555544444332 2244567
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--CcEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh--~vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
++..++.|.....|+.|+|+|+++++|+.|-.+.+||+..--|++.+..+ +++.++||.||++++.++.+..|-+-.+
T Consensus 181 pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~v 260 (313)
T KOG1407|consen 181 PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEV 260 (313)
T ss_pred cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEec
Confidence 89999999999999999999999999999999999999998888888765 4899999999999999999988877666
Q ss_pred C-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2190 N-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2190 n-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
. |..+-.. ++.++...|+|+|...+|+-++.+
T Consensus 261 etGd~~~eI--~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 261 ETGDRVWEI--PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccCCeEEEe--eccCCceeEEecCCCceeeEEecC
Confidence 4 6555543 388999999999999999877643
No 119
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.70 E-value=6.2e-16 Score=177.32 Aligned_cols=283 Identities=17% Similarity=0.180 Sum_probs=200.0
Q ss_pred eeEEEEEcC-CCCEEEEEEcCCcEEEEecCCcc------------c---ceecccCCCCeEEEEecC-CCCEEEEEeCCC
Q 000085 1998 SSAVVSITH-DKEIITGGHVDGSIKLLTSDGAK------------T---LETASGHCAPVTCLALSS-DSNFLVTGSQDT 2060 (2342)
Q Consensus 1998 Svt~VafSp-DGklLASGS~DGsIrVWDl~tgk------------l---l~tL~GHt~~VtcLAfSP-DG~~LaSGS~DG 2060 (2342)
+|+.+.+.+ .|+++++|+.||.|.|||++... + .+.-.+|.-.|..+.|-| |...+.|+|.|.
T Consensus 45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh 124 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH 124 (397)
T ss_pred ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence 344577766 47899999999999999987532 1 112357889999999999 566888999999
Q ss_pred ceEEEeccCCccccccccCCCCCCccccccCCC--C-CceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCE
Q 000085 2061 TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS--S-TPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGV 2134 (2342)
Q Consensus 2061 TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG--~-~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~l 2134 (2342)
+++|||.++.+....+ ..+..|+..+++|-. . .++++..+.. +.+++ +...+++.||.+.|.+|.|+|...+
T Consensus 125 tlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~ 202 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEW 202 (397)
T ss_pred eEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCcee
Confidence 9999999986554433 345566777777632 3 3455444432 33443 6678999999999999999998776
Q ss_pred -EEEEeCCCcEEEEECCCC-eEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEcc
Q 000085 2135 -VVSCSDSSDLLLHSIRRG-RLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISL 2212 (2342)
Q Consensus 2135 -LaSGS~DGtIrIWDLrTG-klIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP 2212 (2342)
++||+.||.|++||++.. .+.+.+..|.. .. .++......|.+.|+.++|+.
T Consensus 203 vLatgsaDg~irlWDiRrasgcf~~lD~hn~------------------k~--------~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 203 VLATGSADGAIRLWDIRRASGCFRVLDQHNT------------------KR--------PPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred EEEecCCCceEEEEEeecccceeEEeecccC------------------cc--------Cccccccccccceeeeeeecc
Confidence 579999999999999764 34444433221 00 011112234999999999999
Q ss_pred CCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccccc----------ccccCCCCcc--CCCCeEEEEECCCCeEEEE
Q 000085 2213 DGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLAS----------DQSVDNNRFD--FPSPSICFLDLHTLKVFHV 2280 (2342)
Q Consensus 2213 DGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~----------~~s~ss~~ia--s~DGsIrIWDL~Tgk~L~t 2280 (2342)
||.++++.+.+.. .++|+...+......|.+-. ..+.....+. -.++.+.++++..+..+..
T Consensus 257 d~~~l~~~gtd~r------~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~ 330 (397)
T KOG4283|consen 257 DARYLASCGTDDR------IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRR 330 (397)
T ss_pred cchhhhhccCccc------eEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEe
Confidence 9999998765544 34555544332221111110 1122222221 1579999999999999999
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2281 LKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2281 L~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
+. .|...|.|.++.|+-+...+|..|+.|..|..
T Consensus 331 l~-~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 331 LS-THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ee-cccceeeEEeecCchhhhhccccCCccccccc
Confidence 99 88999999999999999999999999999985
No 120
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.70 E-value=2.6e-15 Score=185.63 Aligned_cols=363 Identities=13% Similarity=0.070 Sum_probs=224.9
Q ss_pred eeecCCCeEEecCCCceEEEecCCCCCCCccccccccee--------------ccccC-cceeEEEEEcCCCCEEEEEEc
Q 000085 1952 FLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALA--------------FASSG-IRSSAVVSITHDKEIITGGHV 2016 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls--------------~hs~g-I~Svt~VafSpDGklLASGS~ 2016 (2342)
.+.-..+.|+.++.+++||+|+..+.........+..+. ....+ .-..-++.|++....|.+...
T Consensus 265 CIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn 344 (1080)
T KOG1408|consen 265 CICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN 344 (1080)
T ss_pred eeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc
Confidence 344567788889999999999977632222221111110 00011 112234678888999999999
Q ss_pred CCcEEEEecCCcccc---eecccCCCCeEEEEecCC-----------CCEEEEEeCCCceEEEeccCCccccccc-cCCC
Q 000085 2017 DGSIKLLTSDGAKTL---ETASGHCAPVTCLALSSD-----------SNFLVTGSQDTTILLWRIHRAFTSRTGT-IEPS 2081 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll---~tL~GHt~~VtcLAfSPD-----------G~~LaSGS~DGTVrVWDl~tg~~i~t~~-~~~~ 2081 (2342)
|.+++|||+..-+.+ ..+--|...|+.+.--|. ..-++|||.|+||++||+..+.....+. .-..
T Consensus 345 dhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils 424 (1080)
T KOG1408|consen 345 DHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS 424 (1080)
T ss_pred CceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch
Confidence 999999999875433 233458888888876551 1358999999999999998742221110 0000
Q ss_pred CCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV 2161 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh 2161 (2342)
.....+... |+..-+.... .... ..+......+....|.|++++|+|+++++|..-|+++|||+...+....+..|
T Consensus 425 ~~l~ki~y~-d~~~q~~~d~-~~~~--fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH 500 (1080)
T KOG1408|consen 425 ANLSKIPYE-DSTQQIMHDA-SAGI--FDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH 500 (1080)
T ss_pred hhhhcCccc-cCchhhhhhc-cCCc--ccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc
Confidence 000000000 1110000000 0000 01222334455678999999999999999999999999999999988888888
Q ss_pred CcE--EEEEec---CCcEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCC--CEEEEEeCCCCCCCCCcc-
Q 000085 2162 DAH--AVSLSS---EGVIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDG--HSALIGVNSSSTNNGSYD- 2232 (2342)
Q Consensus 2162 ~vs--sLSfSp---DG~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDG--k~LaSGS~DGs~d~~i~d- 2232 (2342)
+.. ++.+|. ..++++.+.++..|++|++.. -.+....-.|...|+++.|...| ..+++++.|.++-.....
T Consensus 501 esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk 580 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQK 580 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcc
Confidence 754 444543 235777788899999999853 23333444599999999998887 667766655442111100
Q ss_pred ----cccccCCCCCCc-cccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC--CCCCeEEEEEecCCCEEEEEe
Q 000085 2233 ----NIQGLNSKQSGT-EDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG--EGQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2233 ----~Lw~l~~~~~~~-iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg--Hs~~ItsLafSPDG~~LaSGS 2305 (2342)
+++.-......+ ..+.-.-..+.....++..|+.|+|||+.+++....++.. |.+....+...|.|.||++.+
T Consensus 581 ~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc 660 (1080)
T KOG1408|consen 581 ASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC 660 (1080)
T ss_pred ccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee
Confidence 000000000000 0000000111112223346999999999999999999853 456788899999999999999
Q ss_pred CCCcEEEEeCCCC
Q 000085 2306 ADKQLIVFTDPAL 2318 (2342)
Q Consensus 2306 sDGsIrVWDi~sL 2318 (2342)
.|.+|.++|.-+.
T Consensus 661 sdktl~~~Df~sg 673 (1080)
T KOG1408|consen 661 SDKTLCFVDFVSG 673 (1080)
T ss_pred cCCceEEEEeccc
Confidence 9999999996544
No 121
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=6.5e-16 Score=175.01 Aligned_cols=218 Identities=16% Similarity=0.217 Sum_probs=176.7
Q ss_pred cCCcEEEEecCCcccceecc--cCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCC
Q 000085 2016 VDGSIKLLTSDGAKTLETAS--GHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIG 2092 (2342)
Q Consensus 2016 ~DGsIrVWDl~tgkll~tL~--GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpD 2092 (2342)
..|.+.|-++..++-++.+. .-.+.+..++|+++ .+.+++++.||++++||+...
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~---------------------- 93 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP---------------------- 93 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC----------------------
Confidence 36889999987555554433 24678999999986 578899999999999995431
Q ss_pred CCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEe
Q 000085 2093 SSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLS 2169 (2342)
Q Consensus 2093 G~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfS 2169 (2342)
..|++.++.|..+|.++.|++. +..++++|.||+|++||...++.++++.+|. +....|+
T Consensus 94 -----------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 94 -----------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFS 156 (311)
T ss_pred -----------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecC
Confidence 2477889999999999999974 6678889999999999999999999999987 6777888
Q ss_pred cC-CcEEEEEeCCCeEEEEEeC--CceeeeecCCCCCCeEEEEEccCC-CEEEEEeCCCCCCCCCcccccccCCCCCCcc
Q 000085 2170 SE-GVIMTWNKLQHTLSSFTLN--GVLVARAKLPLSGSIGCMEISLDG-HSALIGVNSSSTNNGSYDNIQGLNSKQSGTE 2245 (2342)
Q Consensus 2170 pD-G~IlVwdssdGsI~I~dln--G~~L~s~~~~Hs~~ItsLafSPDG-k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~i 2245 (2342)
|. +.+++..+.++.+++|++. |+.+. ...|...|.|+.|+.-. ..++||+.
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~--i~ah~~Eil~cdw~ky~~~vl~Tg~v----------------------- 211 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFMS--IEAHNSEILCCDWSKYNHNVLATGGV----------------------- 211 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCceeE--EEeccceeEeecccccCCcEEEecCC-----------------------
Confidence 84 6778888889999999986 54444 33388999999999854 45555542
Q ss_pred ccccccccccCCCCccCCCCeEEEEECCCC-eEEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCC
Q 000085 2246 DFDLASDQSVDNNRFDFPSPSICFLDLHTL-KVFHVLKLGEGQDITALALNKDN-TNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2246 aFspd~~~s~ss~~ias~DGsIrIWDL~Tg-k~L~tL~lgHs~~ItsLafSPDG-~~LaSGSsDGsIrVWDi~ 2316 (2342)
|+.|++||++.. .++..+. +|+-.|+.+.|||.. ..|++++.|-+++||+..
T Consensus 212 ------------------d~~vr~wDir~~r~pl~eL~-gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 212 ------------------DNLVRGWDIRNLRTPLFELN-GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred ------------------CceEEEEehhhccccceeec-CCceEEEEEecCcchhhHhhhccccceEEecccc
Confidence 677999999875 4567775 999999999999965 578899999999999965
No 122
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.2e-15 Score=192.76 Aligned_cols=240 Identities=17% Similarity=0.206 Sum_probs=194.0
Q ss_pred cccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc-ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 1992 ASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA-KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1992 hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg-kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
|..|.. .++|.|+|++|++++.||.|++|+..+. ....++..|...|.+++.. +++|++|+.+++|.++.+..+
T Consensus 12 ht~G~t---~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 12 HTGGLT---LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred ccCceE---EEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence 444543 4999999999999999999999997665 4555566588889998874 669999999999999998875
Q ss_pred ccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2071 FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2071 ~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
... ..+...+-++++++|+.+|.+++.||.|-.|++-++.
T Consensus 87 ~~~----------------------------------------~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~ 126 (933)
T KOG1274|consen 87 EED----------------------------------------TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD 126 (933)
T ss_pred Ccc----------------------------------------ceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc
Confidence 211 1122335688999999999999999999999999999
Q ss_pred CCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC--------CCCCeEEEEEccCCCEEEEE
Q 000085 2151 RGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP--------LSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2151 TGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~--------Hs~~ItsLafSPDGk~LaSG 2220 (2342)
+....+.+++|. +..+.++|.|.+++...-+|.+++|++..+.+...... ....+..++|+|+|..++.-
T Consensus 127 D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 127 DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee
Confidence 999999999986 78899999999999999999999999975443322211 24456778999995555533
Q ss_pred eCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC-CCeEEEEEecCCC
Q 000085 2221 VNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG-QDITALALNKDNT 2299 (2342)
Q Consensus 2221 S~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs-~~ItsLafSPDG~ 2299 (2342)
+. |+.|.+|+..++...+.+...+. ..+++++|+|.|.
T Consensus 207 ~~-----------------------------------------d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 207 PV-----------------------------------------DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred cc-----------------------------------------CCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence 21 67899999999998888875443 3499999999999
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 000085 2300 NLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2300 ~LaSGSsDGsIrVWDi~s 2317 (2342)
||++++.||.|.|||.+.
T Consensus 246 YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEeeeccCCcEEEEeccc
Confidence 999999999999999875
No 123
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=1.6e-15 Score=186.11 Aligned_cols=269 Identities=13% Similarity=0.171 Sum_probs=206.8
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
++.-++|-|||..|+.+ .+..+.|||...|..+++++||.+.|.|++|+.||+.++||+.|..|.+|.-.-... ..
T Consensus 14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---LK 89 (1081)
T ss_pred chheeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce---ee
Confidence 55669999999965554 367899999999999999999999999999999999999999999999998764322 23
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
-.|...+.++.|+|-...+++++-.....|.....-..-......|.|++|..||++++-|-.||+|.+-+- +|+..-.
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~ 168 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVK 168 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceE
Confidence 457788999999999999988887766667654322111223457889999999999999999999999864 4544434
Q ss_pred Eec-----CCcEEEEEecCC-----cEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2158 LVG-----VDAHAVSLSSEG-----VIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2158 L~g-----h~vssLSfSpDG-----~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
+.. ..+..++|+|.. .++....-..++..|.+.|+.+..... ..-...|+.+.++|.|++.|+.
T Consensus 169 I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~-L~FdP~CisYf~NGEy~LiGGs----- 242 (1081)
T KOG1538|consen 169 IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRA-LNFDPCCISYFTNGEYILLGGS----- 242 (1081)
T ss_pred EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccccc-CCCCchhheeccCCcEEEEccC-----
Confidence 432 237889998854 244433445678899999987763321 3345679999999999999974
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
|+.+.+|.- .|-.+.++. .....|+.++..|++++++.|+.|
T Consensus 243 ------------------------------------dk~L~~fTR-~GvrLGTvg-~~D~WIWtV~~~PNsQ~v~~GCqD 284 (1081)
T KOG1538|consen 243 ------------------------------------DKQLSLFTR-DGVRLGTVG-EQDSWIWTVQAKPNSQYVVVGCQD 284 (1081)
T ss_pred ------------------------------------CCceEEEee-cCeEEeecc-ccceeEEEEEEccCCceEEEEEcc
Confidence 344555543 345566666 567899999999999999999999
Q ss_pred CcEEEEeC
Q 000085 2308 KQLIVFTD 2315 (2342)
Q Consensus 2308 GsIrVWDi 2315 (2342)
|+|-.|++
T Consensus 285 GTiACyNl 292 (1081)
T KOG1538|consen 285 GTIACYNL 292 (1081)
T ss_pred Ceeehhhh
Confidence 99999983
No 124
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=99.68 E-value=3.3e-17 Score=170.23 Aligned_cols=101 Identities=34% Similarity=0.681 Sum_probs=77.9
Q ss_pred eEEEEeeeeEeeeeeeeEEEEEEEeeEEEEEeCCCCCCC----CCCccccccccceEeeccceeEEeeccccCcccEEEE
Q 000085 1474 RIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPE----EGTSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALEL 1549 (2342)
Q Consensus 1474 kVils~~c~mVtPl~v~~G~L~IT~~~LyF~vd~~~~~~----~~~~~~~~~~k~~~~~~~~I~~i~~Rr~~l~~~alEi 1549 (2342)
+|+++++|++|+|+.+.+|+|.||+++|||+.+...... ..........++++|++++|++||+|||+||++||||
T Consensus 1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEi 80 (106)
T PF14844_consen 1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEI 80 (106)
T ss_dssp --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEE
T ss_pred CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEE
Confidence 578999999999999999999999999999977211111 0111122345789999999999999999999999999
Q ss_pred EEeCCceEEEEcCChhhHHHHHHHH
Q 000085 1550 FMVDRSNFFFDFGSTEGRRNAYRAI 1574 (2342)
Q Consensus 1550 f~~~~~s~f~~F~~~~~~~~~~~~i 1574 (2342)
|+.||++|||+|.++++|+++|++|
T Consensus 81 F~~dg~s~f~~F~~~~~R~~v~~~l 105 (106)
T PF14844_consen 81 FFSDGRSYFFNFESKKERDEVYNKL 105 (106)
T ss_dssp EETTS-EEEEE-SSHHHHHHHHCCS
T ss_pred EEcCCcEEEEEcCCHHHHHHHHHhh
Confidence 9999999999999999999998654
No 125
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.68 E-value=3.7e-15 Score=172.40 Aligned_cols=257 Identities=14% Similarity=0.137 Sum_probs=187.5
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccC
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGH 2037 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GH 2037 (2342)
-.++++|-|++||+|..... . ...++....+.+. +.+++|+.||..+++|+.|+.+++||+.++ .+..+..|
T Consensus 41 ~~~~A~SWD~tVR~wevq~~-g---~~~~ka~~~~~~P---vL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~H 112 (347)
T KOG0647|consen 41 NLLAAGSWDGTVRIWEVQNS-G---QLVPKAQQSHDGP---VLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAH 112 (347)
T ss_pred ceEEecccCCceEEEEEecC-C---cccchhhhccCCC---eEEEEEccCCceEEeeccCCceEEEEccCC-Ceeeeeec
Confidence 34567889999999986541 0 1123334444444 566999999999999999999999999999 45566789
Q ss_pred CCCeEEEEecCCCC--EEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEE
Q 000085 2038 CAPVTCLALSSDSN--FLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~--~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~ 2115 (2342)
.++|.++.|-+... .|+|||+|.|++.||.+....+ .+
T Consensus 113 d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv----------------------------------------~t 152 (347)
T KOG0647|consen 113 DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV----------------------------------------AT 152 (347)
T ss_pred ccceeEEEEecCCCcceeEecccccceeecccCCCCee----------------------------------------ee
Confidence 99999999987655 8999999999999999874322 22
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE-EEe---cCCcEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2116 LRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR-RLV---GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr-sL~---gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
+. -.+.+.++.+ ...+++.+..+..|.+|+++++.... .+. ....+++++-.|+...+.+...|.+.+..++.
T Consensus 153 ~~-LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~ 229 (347)
T KOG0647|consen 153 LQ-LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDD 229 (347)
T ss_pred ee-ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCC
Confidence 22 1234454443 35677888888999999997764322 221 13468888888888778888888888887764
Q ss_pred c-eeeeecC-CCC---------CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCc
Q 000085 2192 V-LVARAKL-PLS---------GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRF 2260 (2342)
Q Consensus 2192 ~-~L~s~~~-~Hs---------~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~i 2260 (2342)
. ......+ -|. -.|++|+|+|.-..|+|.+.
T Consensus 230 ~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs-------------------------------------- 271 (347)
T KOG0647|consen 230 PNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS-------------------------------------- 271 (347)
T ss_pred CCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecC--------------------------------------
Confidence 2 1111111 132 25788899998888887752
Q ss_pred cCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE-eCC
Q 000085 2261 DFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS-TAD 2307 (2342)
Q Consensus 2261 as~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG-SsD 2307 (2342)
||+..+||-.....+.+.+ .|..+|++.+|+.+|.+++-+ |.|
T Consensus 272 ---DGtf~FWDkdar~kLk~s~-~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 272 ---DGTFSFWDKDARTKLKTSE-THPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ---CceEEEecchhhhhhhccC-cCCCccceeEecCCCCEEEEEeecc
Confidence 7889999998888788777 799999999999999988854 444
No 126
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.68 E-value=1.3e-15 Score=190.14 Aligned_cols=237 Identities=21% Similarity=0.292 Sum_probs=192.4
Q ss_pred ccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc--eecccCCCCeEE-EEecC-CCCEEEEEeCCCc
Q 000085 1986 PRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL--ETASGHCAPVTC-LALSS-DSNFLVTGSQDTT 2061 (2342)
Q Consensus 1986 p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll--~tL~GHt~~Vtc-LAfSP-DG~~LaSGS~DGT 2061 (2342)
.+.+.+|...++. +++.+ +..+++|+.||++++|+-..++.+ ..+.+|.+.|.+ +++-+ ++..|++|+.|++
T Consensus 7 s~~l~gH~~DVr~---v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 7 SHELEGHKSDVRA---VAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred EEEeccCccchhe---eEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 3444555555543 44443 447889999999999998766554 457789888888 88875 4556999999999
Q ss_pred eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2062 ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS 2141 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D 2141 (2342)
|.+|...+. .|+.+|.||...|.|+....++. ++|||.|
T Consensus 83 i~v~~~~~~----------------------------------------~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD 121 (745)
T KOG0301|consen 83 IIVFKLSQA----------------------------------------EPLYTLKGHKSNVCSLSIGEDGT-LISGSWD 121 (745)
T ss_pred EEEEecCCC----------------------------------------CchhhhhccccceeeeecCCcCc-eEecccc
Confidence 999998774 46778899999999999877777 9999999
Q ss_pred CcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEE
Q 000085 2142 SDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALI 2219 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaS 2219 (2342)
.++++|-. +++...+.+|+ +..+..-|++ .++.++.|..|++|.- ........+|.+-|..+++-+++.++-+
T Consensus 122 ~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flSc 196 (745)
T KOG0301|consen 122 STAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSC 196 (745)
T ss_pred cceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEee
Confidence 99999974 66777788886 6777777888 7888999999999984 3444455669999999999988776643
Q ss_pred EeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCC
Q 000085 2220 GVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNT 2299 (2342)
Q Consensus 2220 GS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~ 2299 (2342)
+ .||.|+.|++ +|+++.... +|..-|.+++...++.
T Consensus 197 s------------------------------------------NDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~~ 232 (745)
T KOG0301|consen 197 S------------------------------------------NDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSDG 232 (745)
T ss_pred c------------------------------------------CCceEEEEec-cCceeeeee-ccceEEEEEEecCCCC
Confidence 3 2888999999 888899988 9999999999888889
Q ss_pred EEEEEeCCCcEEEEeCC
Q 000085 2300 NLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2300 ~LaSGSsDGsIrVWDi~ 2316 (2342)
.++++|+|+++++|+..
T Consensus 233 ~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eEEEecCCceEEEeecC
Confidence 99999999999999965
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=4.1e-15 Score=179.81 Aligned_cols=242 Identities=19% Similarity=0.234 Sum_probs=176.6
Q ss_pred CEEEEEE-cCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccc
Q 000085 2009 EIITGGH-VDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTP 2087 (2342)
Q Consensus 2009 klLASGS-~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~sv 2087 (2342)
.+++++. .-..+.+|.+..........--.++|.|++-+|+|.+|+.|+..|.+.+|.+.+|..
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L--------------- 115 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL--------------- 115 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccH---------------
Confidence 4555543 455789999876554443334567899999999999999999999999999999743
Q ss_pred cccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---------CeEEEEE
Q 000085 2088 GNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR---------GRLIRRL 2158 (2342)
Q Consensus 2088 s~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT---------GklIrsL 2158 (2342)
+..+.+|-..|+|+.|+.|+.+++|||.||.|.+|++.+ -+.++.+
T Consensus 116 -------------------------L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 116 -------------------------LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred -------------------------HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence 334578999999999999999999999999999998742 3466777
Q ss_pred ecCC--cEEEEEecCC--cEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccc
Q 000085 2159 VGVD--AHAVSLSSEG--VIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233 (2342)
Q Consensus 2159 ~gh~--vssLSfSpDG--~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~ 2233 (2342)
..|. ++.+.+++.| ..++..+.|.++++|++. |..+.... ....|.+++++|-+..+++|+.+|.+....
T Consensus 171 ~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~--- 245 (476)
T KOG0646|consen 171 SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNL--- 245 (476)
T ss_pred ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcccccEEEecCCcceEEeee---
Confidence 7775 5556555543 456667889999999997 44444444 568899999999999999998766621111
Q ss_pred ccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCC--CeEEEEEecCCCEEEEEeCCCcEE
Q 000085 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQ--DITALALNKDNTNLLVSTADKQLI 2311 (2342)
Q Consensus 2234 Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~--~ItsLafSPDG~~LaSGSsDGsIr 2311 (2342)
++.... .. .+=..+.++.. +..+..+. ||.. .|+|++++-||..|++|+.||.|+
T Consensus 246 ~~~~~~------------~~---------~~v~~k~~~~~-~t~~~~~~-Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 246 LFKLSG------------QS---------AGVNQKGRHEE-NTQINVLV-GHENESAITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred hhcCCc------------cc---------ccccccccccc-cceeeeec-cccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence 111110 00 00012222222 23345566 7877 999999999999999999999999
Q ss_pred EEeCCCC
Q 000085 2312 VFTDPAL 2318 (2342)
Q Consensus 2312 VWDi~sL 2318 (2342)
|||+.+.
T Consensus 303 vWdi~S~ 309 (476)
T KOG0646|consen 303 VWDIYSK 309 (476)
T ss_pred EEecchH
Confidence 9996554
No 128
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.67 E-value=4.3e-15 Score=185.31 Aligned_cols=314 Identities=15% Similarity=0.110 Sum_probs=217.7
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccce---eccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC-c--cc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRAL---AFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG-A--KT 2030 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sl---s~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t-g--kl 2030 (2342)
+..|.+++.|+++-+|..... ..-|.-.-++ .+..++.- ..-|+|+++.+++-+..|..++|.... . ..
T Consensus 279 ~~~LLSASaDksmiiW~pd~~--tGiWv~~vRlGe~gg~a~GF~---g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~ 353 (764)
T KOG1063|consen 279 GLDLLSASADKSMIIWKPDEN--TGIWVDVVRLGEVGGSAGGFW---GGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQ 353 (764)
T ss_pred hhhheecccCcceEEEecCCc--cceEEEEEEeeccccccccee---eEEEcCCCCEEEEecccCcEEEEeccCccceee
Confidence 346778999999999986542 1234221111 11222332 377999999999999999999998322 2 23
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc-ccccc--ccCCCCCCccccccC----------------
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF-TSRTG--TIEPSSGMGTPGNSI---------------- 2091 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~-~i~t~--~~~~~~~V~svs~Sp---------------- 2091 (2342)
...+.||.+.|+.++|+|.|.+|+|.|.|.|-|++---..+ .-+.+ ..-|.....++++-+
T Consensus 354 ~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRv 433 (764)
T KOG1063|consen 354 EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRV 433 (764)
T ss_pred ccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeee
Confidence 34578999999999999999999999999999987544111 01111 111122222222211
Q ss_pred --------------------------CCCCc-eeecCC----------Ccc--------------------------ccc
Q 000085 2092 --------------------------GSSTP-ANASAD----------KSR--------------------------RRR 2108 (2342)
Q Consensus 2092 --------------------------DG~~L-as~s~D----------~s~--------------------------~~~ 2108 (2342)
+|-.+ +.+..+ +.. ...
T Consensus 434 F~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~t 513 (764)
T KOG1063|consen 434 FEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNT 513 (764)
T ss_pred ecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhc
Confidence 11000 000000 000 000
Q ss_pred cCCceEEecCCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCC
Q 000085 2109 IEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSS-----DLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQ 2181 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG-----tIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssd 2181 (2342)
+...++.++||...|+|++.+|++++++|++... .|++|+..+-..++.+.+|. ++.++|||||++++..++|
T Consensus 514 LwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 514 LWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred cchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence 0123677899999999999999999999998754 58999999888888898886 7899999999999999999
Q ss_pred CeEEEEEeCCceeeee----cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCC
Q 000085 2182 HTLSSFTLNGVLVARA----KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDN 2257 (2342)
Q Consensus 2182 GsI~I~dlnG~~L~s~----~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss 2257 (2342)
.++.+|.......... ...|..-|++..|+|++.+++|+|.
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSR----------------------------------- 638 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASR----------------------------------- 638 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecC-----------------------------------
Confidence 9999999743222222 2239999999999999999999973
Q ss_pred CCccCCCCeEEEEECCCC--eEEEE-EecCCCCCeEEEEEec----C-CCEEEEEeCCCcEEEEeCC
Q 000085 2258 NRFDFPSPSICFLDLHTL--KVFHV-LKLGEGQDITALALNK----D-NTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2258 ~~ias~DGsIrIWDL~Tg--k~L~t-L~lgHs~~ItsLafSP----D-G~~LaSGSsDGsIrVWDi~ 2316 (2342)
|.+|.||..... +.+.. ....++..|++++|.| + +..+++|...|.|.+|..+
T Consensus 639 ------DK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 639 ------DKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ------CceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 777999988776 44333 2225888999999987 2 2367889999999999955
No 129
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.67 E-value=4.2e-16 Score=175.68 Aligned_cols=255 Identities=17% Similarity=0.199 Sum_probs=203.2
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
+|-.+++++-|+.-.+-++.+| +| ..+..+|.+.+-+ .++..+....|+++.|-+-+|||.-+|..+.++.
T Consensus 28 ~g~flisa~kd~~pmlr~g~tg----dw--igtfeghkgavw~---~~l~~na~~aasaaadftakvw~a~tgdelhsf~ 98 (334)
T KOG0278|consen 28 DGYFLISASKDGKPMLRNGDTG----DW--IGTFEGHKGAVWS---ATLNKNATRAASAAADFTAKVWDAVTGDELHSFE 98 (334)
T ss_pred CceEEEEeccCCCchhccCCCC----Cc--EEeeeccCcceee---eecCchhhhhhhhcccchhhhhhhhhhhhhhhhh
Confidence 4445677777766555566553 34 2234456655544 6677777789999999999999999999998886
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCc
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGP 2112 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~ 2112 (2342)
|...|..++|+.|.++|+||+.+..++|+|++..........++++++..+.|....+.+.+...++. +.|+. ...
T Consensus 99 -hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 99 -HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE 177 (334)
T ss_pred -hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence 99999999999999999999999999999999876655557788999999988887777777666654 55765 445
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeC-
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLN- 2190 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dln- 2190 (2342)
++.+. -..+|+++.++++|++|.+ ...+.|.+||..+-..++.++.. .+...+.+|+..+++.+..+..++.|+.+
T Consensus 178 v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 178 VQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred EEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccC
Confidence 55554 3568999999999986654 45679999999999999888764 47888999999999999999999999987
Q ss_pred CceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2191 GVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2191 G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
|..+.....+|.++|.|+.|+|||...++||.
T Consensus 256 geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 256 GEEIGSYNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred CceeeecccCCCCceEEEEECCCCceeeccCC
Confidence 55555545669999999999999999998874
No 130
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.66 E-value=2.6e-15 Score=181.53 Aligned_cols=241 Identities=14% Similarity=0.197 Sum_probs=183.1
Q ss_pred EEEcCCCC-EEEEEEcCCcEEEEecCCcc----------cceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccC
Q 000085 2002 VSITHDKE-IITGGHVDGSIKLLTSDGAK----------TLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2002 VafSpDGk-lLASGS~DGsIrVWDl~tgk----------ll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~t 2069 (2342)
+.+-|+.. +||+++..+.|.|||...-. +-.++.||.+.=..++|++. ..+|++|+.|++|++||+..
T Consensus 130 aRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~ 209 (422)
T KOG0264|consen 130 ARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINA 209 (422)
T ss_pred hhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccc
Confidence 55566655 78888999999999986421 12378899997888999985 45899999999999999987
Q ss_pred CccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEE
Q 000085 2070 AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2070 g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWD 2148 (2342)
..... ..-.+...+.+|...|..++|++- ..++++++.|+.+.|||
T Consensus 210 ~~~~~---------------------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD 256 (422)
T KOG0264|consen 210 ESKED---------------------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWD 256 (422)
T ss_pred cccCC---------------------------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEE
Confidence 42110 012456788999999999999984 67789999999999999
Q ss_pred CCC--CeEEEEEecCC--cEEEEEecCC-cEEEEEeCCCeEEEEEeCCcee-eeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2149 IRR--GRLIRRLVGVD--AHAVSLSSEG-VIMTWNKLQHTLSSFTLNGVLV-ARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2149 LrT--GklIrsL~gh~--vssLSfSpDG-~IlVwdssdGsI~I~dlnG~~L-~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
+|+ .+..+....|. +.+++|+|-+ .+++.++.+++|.+|++..-.. .....+|...|.+|.|||....+++.+
T Consensus 257 ~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS- 335 (422)
T KOG0264|consen 257 TRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS- 335 (422)
T ss_pred cCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec-
Confidence 994 45555666664 7899999855 5666777899999999864221 222334999999999999877666443
Q ss_pred CCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC--------------eEEEEEecCCCCC
Q 000085 2223 SSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL--------------KVFHVLKLGEGQD 2288 (2342)
Q Consensus 2223 DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg--------------k~L~tL~lgHs~~ 2288 (2342)
|. |+.+.|||+..- ++++.-. ||...
T Consensus 336 -g~--------------------------------------D~rl~vWDls~ig~eq~~eda~dgppEllF~Hg-GH~~k 375 (422)
T KOG0264|consen 336 -GT--------------------------------------DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHG-GHTAK 375 (422)
T ss_pred -cc--------------------------------------CCcEEEEeccccccccChhhhccCCcceeEEec-Ccccc
Confidence 22 777888888542 2234444 89999
Q ss_pred eEEEEEecCCCEE-EEEeCCCcEEEEeCC
Q 000085 2289 ITALALNKDNTNL-LVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2289 ItsLafSPDG~~L-aSGSsDGsIrVWDi~ 2316 (2342)
|..+.|+|...++ ++.++|+.+.||...
T Consensus 376 V~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 376 VSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999988765 577999999999954
No 131
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.65 E-value=4.6e-15 Score=183.63 Aligned_cols=294 Identities=14% Similarity=0.117 Sum_probs=196.2
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee--ccc
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET--ASG 2036 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t--L~G 2036 (2342)
.++.+..++.|.+|+........ -.+.+.+-..+...+.-+.|.|....|++.+.|.++++||+.+++++.. +.|
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~---ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRL---EERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred eEEEecCCCceeeecchhhhcch---hhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence 45556677788888754311110 0111222233444455588999555899999999999999999988876 899
Q ss_pred CCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccc--c----ccCCCCCCccccccCCCCCceeecCCCcccccc
Q 000085 2037 HCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRT--G----TIEPSSGMGTPGNSIGSSTPANASADKSRRRRI 2109 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t--~----~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i 2109 (2342)
|++.|.+++|.|+. ..|+||+.||.|.|||++-...-.. + ...+..+. .| .-..
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p-----tp--------------skp~ 203 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP-----TP--------------SKPL 203 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC-----CC--------------Cchh
Confidence 99999999999964 6789999999999999976431110 0 00010000 00 0000
Q ss_pred CCceEEecCCCCCeEE---EEEecCCCEEEEEeC-CCcEEEEECCCCeEEEEEe--------c-----CCcEEEEEecCC
Q 000085 2110 EGPIHVLRGHHREILC---CCVSSDLGVVVSCSD-SSDLLLHSIRRGRLIRRLV--------G-----VDAHAVSLSSEG 2172 (2342)
Q Consensus 2110 ~~~l~~L~GHs~~Vt~---VafSPDg~lLaSGS~-DGtIrIWDLrTGklIrsL~--------g-----h~vssLSfSpDG 2172 (2342)
.+.+..-..|...|.+ +.+..|...|||+|. |+.|+|||+++........ . ++...++....|
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 1112223445555554 455578888998887 9999999999765443321 1 235677778888
Q ss_pred cEEEEEeCCCeEEEEEeCCceeee--ecCCC--CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccc
Q 000085 2173 VIMTWNKLQHTLSSFTLNGVLVAR--AKLPL--SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFD 2248 (2342)
Q Consensus 2173 ~IlVwdssdGsI~I~dlnG~~L~s--~~~~H--s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFs 2248 (2342)
..++..+.|+.|+.|++.+..+.- ...++ ...-..-..+||+.++++|+.
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs-------------------------- 337 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS-------------------------- 337 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCC--------------------------
Confidence 999999999999999986522211 11111 111122356889999998863
Q ss_pred cccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeC
Q 000085 2249 LASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN-TNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2249 pd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG-~~LaSGSsDGsIrVWDi 2315 (2342)
|...++|.+.+.+.--.+..+|...|++++|.|.. .-+++++.|-+++||++
T Consensus 338 ---------------d~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 338 ---------------DEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred ---------------CcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 56689999988766555556999999999998843 45888899999999996
No 132
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=9.3e-15 Score=169.29 Aligned_cols=259 Identities=14% Similarity=0.153 Sum_probs=182.2
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCC---ccc
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDG---AKT 2030 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~t---gkl 2030 (2342)
.+|+.+++++.|++||+|+..... ..+..+ +. .+-...-.+.+.|+||-+ ++++....+++++|.... |..
T Consensus 96 SdGK~lat~~~Dr~Ir~w~~~DF~-~~eHr~---~R-~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~ 170 (420)
T KOG2096|consen 96 SDGKKLATISGDRSIRLWDVRDFE-NKEHRC---IR-QNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSG 170 (420)
T ss_pred CCCceeEEEeCCceEEEEecchhh-hhhhhH---hh-ccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCC
Confidence 579999999999999999865411 011111 10 111222346699999988 666666778899997643 221
Q ss_pred ce---------ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecC
Q 000085 2031 LE---------TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASA 2101 (2342)
Q Consensus 2031 l~---------tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~ 2101 (2342)
.. .-..|.-.|..+-...++.+|+|+|.|.+|.+|++. |+.+... ......-...+.||+|++++++..
T Consensus 171 ~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i-dtnq~~n~~aavSP~GRFia~~gF 248 (420)
T KOG2096|consen 171 SHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI-DTNQSSNYDAAVSPDGRFIAVSGF 248 (420)
T ss_pred CcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee-ccccccccceeeCCCCcEEEEecC
Confidence 11 113466778888888889999999999999999999 4444333 122233455678999999977765
Q ss_pred C-Ccccccc----------CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC----C---eEEEEEe----
Q 000085 2102 D-KSRRRRI----------EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR----G---RLIRRLV---- 2159 (2342)
Q Consensus 2102 D-~s~~~~i----------~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT----G---klIrsL~---- 2159 (2342)
. .+..|.+ -..+..+.||...|+..+|+++...++|.|.||+++|||+.- + +.++...
T Consensus 249 TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~ 328 (420)
T KOG2096|consen 249 TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLH 328 (420)
T ss_pred CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchh
Confidence 4 3444543 123567899999999999999999999999999999999752 1 1222221
Q ss_pred --cCCcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2160 --GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2160 --gh~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+....-++.||+|.+++... ...+++|... |.........|...|.+++|+++|+++++++
T Consensus 329 aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 329 AAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred hcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 11235789999999888764 3457777764 5555554455999999999999999999886
No 133
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=1.6e-15 Score=190.99 Aligned_cols=238 Identities=17% Similarity=0.193 Sum_probs=186.3
Q ss_pred eEEEEEcC-CCCEEEEEEcCCcEEEEecCC---cccceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccc
Q 000085 1999 SAVVSITH-DKEIITGGHVDGSIKLLTSDG---AKTLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 1999 vt~VafSp-DGklLASGS~DGsIrVWDl~t---gkll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
+.-|.|.. +.++||+++..|.|.+||+.. .+.+..+..|+..|+++.|++. ..+|+|||+||+|++||++....
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S- 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS- 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-
Confidence 33456653 456999999999999999986 5677789999999999999984 57899999999999999987432
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTG 2152 (2342)
..++.+....|..|.|+|. +..++++...|.+.+||+|..
T Consensus 169 ---------------------------------------~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp 209 (839)
T KOG0269|consen 169 ---------------------------------------KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP 209 (839)
T ss_pred ---------------------------------------cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc
Confidence 2234556788999999984 788999999999999999864
Q ss_pred -eEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeec-CCCCCCeEEEEEccCCCEEEEEeCCCCCCC
Q 000085 2153 -RLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAK-LPLSGSIGCMEISLDGHSALIGVNSSSTNN 2228 (2342)
Q Consensus 2153 -klIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~-~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~ 2228 (2342)
++...+..|. +.++.|+|++.+++.+++|+.+++|+..+....... .....+|.+|.|-|+..+.++.+ +
T Consensus 210 ~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtc---s--- 283 (839)
T KOG0269|consen 210 DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATC---S--- 283 (839)
T ss_pred hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhh---h---
Confidence 5666677775 678889999999999999999999999853332221 22457899999999887665332 1
Q ss_pred CCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe-EEEEEecCCCCCeEEEEEec-CCCEEEEEeC
Q 000085 2229 GSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK-VFHVLKLGEGQDITALALNK-DNTNLLVSTA 2306 (2342)
Q Consensus 2229 ~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk-~L~tL~lgHs~~ItsLafSP-DG~~LaSGSs 2306 (2342)
-+.|-.|+|||++..- +..++. .|...++.++|-. |...|.+++.
T Consensus 284 --------------------------------mv~dtsV~VWDvrRPYIP~~t~~-eH~~~vt~i~W~~~d~~~l~s~sK 330 (839)
T KOG0269|consen 284 --------------------------------MVVDTSVHVWDVRRPYIPYATFL-EHTDSVTGIAWDSGDRINLWSCSK 330 (839)
T ss_pred --------------------------------ccccceEEEEeeccccccceeee-ccCccccceeccCCCceeeEeecC
Confidence 1137789999998654 344555 8999999999965 5567889999
Q ss_pred CCcEEEEeC
Q 000085 2307 DKQLIVFTD 2315 (2342)
Q Consensus 2307 DGsIrVWDi 2315 (2342)
||+|..-.+
T Consensus 331 D~tv~qh~~ 339 (839)
T KOG0269|consen 331 DGTVLQHLF 339 (839)
T ss_pred ccHHHHhhh
Confidence 998876543
No 134
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.65 E-value=4.1e-15 Score=185.45 Aligned_cols=314 Identities=15% Similarity=0.105 Sum_probs=210.9
Q ss_pred EEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC---EEEEEEcCCcEEEEecCCcc-------
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE---IITGGHVDGSIKLLTSDGAK------- 2029 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk---lLASGS~DGsIrVWDl~tgk------- 2029 (2342)
++.++++..+.++.... ..+..-..+.+|..-|++ ++|...+. +||+|+.|..||||.+.-+.
T Consensus 162 la~Ggs~~~v~~~s~~~----d~f~~v~el~GH~DWIrs---l~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~ 234 (764)
T KOG1063|consen 162 LACGGSKFVVDLYSSSA----DSFARVAELEGHTDWIRS---LAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNER 234 (764)
T ss_pred EEecCcceEEEEeccCC----cceeEEEEeeccchhhhh---hhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccc
Confidence 34566666777776432 123333455666666666 77765544 99999999999999763211
Q ss_pred --------------cc----------eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc------ccC
Q 000085 2030 --------------TL----------ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG------TIE 2079 (2342)
Q Consensus 2030 --------------ll----------~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~------~~~ 2079 (2342)
.. ..+.||.+.|.++.|+|.+..|+|+|.|.++.+|.......+... ..+
T Consensus 235 e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg 314 (764)
T KOG1063|consen 235 EDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGG 314 (764)
T ss_pred ccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccc
Confidence 11 124599999999999999999999999999999988764322211 123
Q ss_pred CCCCCccccccCCCCCceeecCC-CccccccC-----CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2080 PSSGMGTPGNSIGSSTPANASAD-KSRRRRIE-----GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D-~s~~~~i~-----~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
...+.....|++++..+.+.+.. +-..|... .+.....||.+.|+.++|+|.|.+++|.|.|.|-+++-.-..+
T Consensus 315 ~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q 394 (764)
T KOG1063|consen 315 SAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ 394 (764)
T ss_pred cccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccc
Confidence 34456777889998777555544 34556532 2345668999999999999999999999999999998654111
Q ss_pred -EEE-----EEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCC------------------------------------
Q 000085 2154 -LIR-----RLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG------------------------------------ 2191 (2342)
Q Consensus 2154 -lIr-----sL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG------------------------------------ 2191 (2342)
.-+ ++.++...++++-+....++.+.....+++|....
T Consensus 395 ~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 395 QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 111 12233445555544333333333333334433210
Q ss_pred --------ce--------------------------------eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc
Q 000085 2192 --------VL--------------------------------VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2192 --------~~--------------------------------L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~ 2231 (2342)
.. -....++|...|++++.+|+|+++++++.+..
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~------ 548 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSL------ 548 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCC------
Confidence 00 00011246677777777777777776643222
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLI 2311 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIr 2311 (2342)
.....|++|+..+...++.+. +|+-.|+.++|||||++|++.+.|.++.
T Consensus 549 ------------------------------~ehAvI~lw~t~~W~~~~~L~-~HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 549 ------------------------------KEHAVIRLWNTANWLQVQELE-GHSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred ------------------------------ccceEEEEEeccchhhhheec-ccceEEEEEEECCCCcEEEEeecCceEE
Confidence 123469999999988888888 9999999999999999999999999999
Q ss_pred EEeCCC
Q 000085 2312 VFTDPA 2317 (2342)
Q Consensus 2312 VWDi~s 2317 (2342)
+|....
T Consensus 598 l~~~~~ 603 (764)
T KOG1063|consen 598 LYEVQE 603 (764)
T ss_pred eeeeec
Confidence 999643
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=3.3e-16 Score=195.52 Aligned_cols=216 Identities=19% Similarity=0.310 Sum_probs=182.7
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
++.+++|+.|-.+-+|.... .|. ...+.+|..+|.+ +.|+++..+|++|+.+|+|++||+..++.++++.|
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~k-----p~~-i~S~~~hespIeS---l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtg 110 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGK-----PNA-ITSLTGHESPIES---LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTG 110 (825)
T ss_pred ceeeccCCCceeeccccccC-----Cch-hheeeccCCccee---eecCcchhhhcccccCCceeeeehhhhhhhhhhhc
Confidence 45566777777777775321 121 1235677777766 99999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL 2116 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L 2116 (2342)
|...++.+.|+|-+.|.++||.|+.+++||++.. ++.+.+
T Consensus 111 h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~----------------------------------------Gc~~~~ 150 (825)
T KOG0267|consen 111 HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK----------------------------------------GCSHTY 150 (825)
T ss_pred cccCcceeeeccceEEeccccccccceehhhhcc----------------------------------------Cceeee
Confidence 9999999999999999999999999999999863 456677
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCcee
Q 000085 2117 RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLV 2194 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L 2194 (2342)
.+|...|.++.|+|+|.++++|+.|.+++|||...|+.+..|..|+ +..+.|+|...++.-+..++.+++|++....+
T Consensus 151 ~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred cCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE
Confidence 8999999999999999999999999999999999999999999876 56677888888888888899999999875444
Q ss_pred eeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2195 ARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2195 ~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.....+....|.|..|+++|..+++|.
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred eeccCCccCCceeeeecCCceeeecCc
Confidence 444444678999999999999999884
No 136
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=4.3e-15 Score=167.76 Aligned_cols=234 Identities=11% Similarity=0.092 Sum_probs=178.5
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCc---ccceecccCCCCeEEEEecC--CCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGA---KTLETASGHCAPVTCLALSS--DSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tg---kll~tL~GHt~~VtcLAfSP--DG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
+...--|+.||+++.|++|+|+.+... +++.+|.||.++|+.++|.. -|.+|+|+|.||.|.||.-.++.-
T Consensus 17 a~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w---- 92 (299)
T KOG1332|consen 17 AQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW---- 92 (299)
T ss_pred hhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch----
Confidence 445556899999999999999998754 46788999999999999976 699999999999999999877521
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCC--
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLLHSIRRG-- 2152 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIWDLrTG-- 2152 (2342)
...+....|...|++|+|.|. |-.|++++.||.|.|.+.++.
T Consensus 93 ----------------------------------~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 93 ----------------------------------TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred ----------------------------------hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 233456789999999999885 678899999999999988754
Q ss_pred eEE-EEEecC--CcEEEEEecC---C-----------cEEEEEeCCCeEEEEEeCCc--eeeeecCCCCCCeEEEEEccC
Q 000085 2153 RLI-RRLVGV--DAHAVSLSSE---G-----------VIMTWNKLQHTLSSFTLNGV--LVARAKLPLSGSIGCMEISLD 2213 (2342)
Q Consensus 2153 klI-rsL~gh--~vssLSfSpD---G-----------~IlVwdssdGsI~I~dlnG~--~L~s~~~~Hs~~ItsLafSPD 2213 (2342)
... +....| +++.+++.|. | +-++.+..|..+.+|..+.. .+......|.+.|..++|.|.
T Consensus 139 w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 139 WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS 218 (299)
T ss_pred ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc
Confidence 222 223334 3688888875 4 34677778889999998642 223334459999999999996
Q ss_pred C----CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC--eEEEEEecCCCC
Q 000085 2214 G----HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL--KVFHVLKLGEGQ 2287 (2342)
Q Consensus 2214 G----k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg--k~L~tL~lgHs~ 2287 (2342)
- .++++++ .||++.||..... .-..++......
T Consensus 219 ~gl~~s~iAS~S-----------------------------------------qDg~viIwt~~~e~e~wk~tll~~f~~ 257 (299)
T KOG1332|consen 219 VGLPKSTIASCS-----------------------------------------QDGTVIIWTKDEEYEPWKKTLLEEFPD 257 (299)
T ss_pred cCCCceeeEEec-----------------------------------------CCCcEEEEEecCccCcccccccccCCc
Confidence 4 3455554 3778888876521 111222213457
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2288 DITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2288 ~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
.+..+.||..|..|++++.|+.|.+|.
T Consensus 258 ~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 258 VVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ceEEEEEeccccEEEEecCCcEEEEEE
Confidence 899999999999999999999999998
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.62 E-value=1.7e-13 Score=162.76 Aligned_cols=227 Identities=13% Similarity=0.157 Sum_probs=167.1
Q ss_pred CEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccCCCCCCccc
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTP 2087 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~sv 2087 (2342)
+++++++.|+.|++||+.+++.+..+.+|.. +.+++|+|+++.+ ++++.|++|++||..++...
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-------------- 66 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-------------- 66 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--------------
Confidence 5788899999999999999998888886654 6789999999876 56788999999998874321
Q ss_pred cccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEE-EeCCCcEEEEECCCCeEEEEEec-CCcEE
Q 000085 2088 GNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVS-CSDSSDLLLHSIRRGRLIRRLVG-VDAHA 2165 (2342)
Q Consensus 2088 s~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaS-GS~DGtIrIWDLrTGklIrsL~g-h~vss 2165 (2342)
..+..+. .+..++|+|+++.+++ ++.|+.|++||+++++.+..+.. .....
T Consensus 67 --------------------------~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 119 (300)
T TIGR03866 67 --------------------------GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEG 119 (300)
T ss_pred --------------------------EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcce
Confidence 1122222 2457889999987754 55689999999999988888763 34678
Q ss_pred EEEecCCcEEEEEeCCC-eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc
Q 000085 2166 VSLSSEGVIMTWNKLQH-TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT 2244 (2342)
Q Consensus 2166 LSfSpDG~IlVwdssdG-sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ 2244 (2342)
++++|+|.+++....++ .+..|+.......... .....+.+++|+++|+++++++.
T Consensus 120 ~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~---------------------- 176 (300)
T TIGR03866 120 MAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV-LVDQRPRFAEFTADGKELWVSSE---------------------- 176 (300)
T ss_pred EEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE-EcCCCccEEEECCCCCEEEEEcC----------------------
Confidence 99999999988876654 4666787643332211 13345678999999998875531
Q ss_pred cccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC----CC--CCeEEEEEecCCCEEEEE-eCCCcEEEEeCCC
Q 000085 2245 EDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG----EG--QDITALALNKDNTNLLVS-TADKQLIVFTDPA 2317 (2342)
Q Consensus 2245 iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg----Hs--~~ItsLafSPDG~~LaSG-SsDGsIrVWDi~s 2317 (2342)
.++.|++||+.+++.+..+... +. .....++|+|++++++++ +.++.|.+||..+
T Consensus 177 ------------------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 177 ------------------IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred ------------------CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 1578999999999887766411 11 123568899999986554 5677899999765
Q ss_pred C
Q 000085 2318 L 2318 (2342)
Q Consensus 2318 L 2318 (2342)
.
T Consensus 239 ~ 239 (300)
T TIGR03866 239 Y 239 (300)
T ss_pred C
Confidence 4
No 138
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=6.2e-14 Score=155.86 Aligned_cols=263 Identities=14% Similarity=0.163 Sum_probs=203.8
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc------c--------ccccCCCCCCccccccCCCCCceeecCC
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS------R--------TGTIEPSSGMGTPGNSIGSSTPANASAD 2102 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i------~--------t~~~~~~~~V~svs~SpDG~~Las~s~D 2102 (2342)
.+..|.+++|+|.|.+.+.||...|.+|.....-... . +....|.+.+++.+|+|+|..+++++.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 4567999999999999999999999998754321110 0 1134577889999999999999999999
Q ss_pred Ccccc--------ccCCceEEecCCCCCeEEEEEecC----CCEEEEEe-CCCcEEEEECCCCeEEEEEecCCcEEEE-E
Q 000085 2103 KSRRR--------RIEGPIHVLRGHHREILCCCVSSD----LGVVVSCS-DSSDLLLHSIRRGRLIRRLVGVDAHAVS-L 2168 (2342)
Q Consensus 2103 ~s~~~--------~i~~~l~~L~GHs~~Vt~VafSPD----g~lLaSGS-~DGtIrIWDLrTGklIrsL~gh~vssLS-f 2168 (2342)
+.... ...++-..+.-|.+.|..++|-.+ +.++++++ .|..|++-|..+|+..+.+.+|....++ +
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY 190 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence 76542 123445677889999999999643 55677765 5778888899999999999999877766 4
Q ss_pred ecCCcEEEEEeCCCeEEEEEeCCce-eeeecCC------CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCC
Q 000085 2169 SSEGVIMTWNKLQHTLSSFTLNGVL-VARAKLP------LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ 2241 (2342)
Q Consensus 2169 SpDG~IlVwdssdGsI~I~dlnG~~-L~s~~~~------Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~ 2241 (2342)
+-+|..++.+..+.+|+.|++.-.. +...... ....|.++++.|.|++|++|-.
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~------------------- 251 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA------------------- 251 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-------------------
Confidence 7788888888999999999985321 1111111 2467999999999999998842
Q ss_pred CCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCChh
Q 000085 2242 SGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALSLK 2321 (2342)
Q Consensus 2242 ~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs~k 2321 (2342)
|.+..+||++.++.++.+. .|...|+|+.|||...++++|+.|..|++=|.++--..
T Consensus 252 ----------------------dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~ 308 (350)
T KOG0641|consen 252 ----------------------DSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH 308 (350)
T ss_pred ----------------------CCceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccchhh
Confidence 5668899999999999998 89999999999999999999999999999997643222
Q ss_pred hh---------hhhhhccccCCCcccccc
Q 000085 2322 VV---------DQMLKLGWEGDGLSPLIK 2341 (2342)
Q Consensus 2322 ~L---------dQLLk~GWegDGLspLis 2341 (2342)
.+ +..++.-|.+..++=+.+
T Consensus 309 el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 309 ELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred cCceEEEEeccCceEEEEecCccceeeec
Confidence 22 456677898887765443
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.61 E-value=4.4e-15 Score=178.79 Aligned_cols=231 Identities=14% Similarity=0.119 Sum_probs=186.7
Q ss_pred CceeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc
Q 000085 1950 TPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK 2029 (2342)
Q Consensus 1950 s~flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk 2029 (2342)
+..++++|+.++.++...++.||+...-.....-.+ ...-..+.+++++||.++.++++.||.|.|||+.+..
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLAapTprikael-------tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL-------TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred eeEecCCCceEEeccccceeeeeeccCCCcchhhhc-------CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 456789999999999999999999654111111111 1111234568999999999999999999999999999
Q ss_pred cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccc-cc
Q 000085 2030 TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR-RR 2108 (2342)
Q Consensus 2030 ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~ 2108 (2342)
.++.|+||++.+.||.+++||..|.||+-|.+|+-||++.+...... .....|.++..+|.+..++++..+.... ..
T Consensus 543 ~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~vevlh 620 (705)
T KOG0639|consen 543 LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSNVEVLH 620 (705)
T ss_pred eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeeecccCcEEEEe
Confidence 99999999999999999999999999999999999999987654332 3455678888999999999998775432 22
Q ss_pred c-CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEE
Q 000085 2109 I-EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSS 2186 (2342)
Q Consensus 2109 i-~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I 2186 (2342)
. ....+.+.-|...|.++.|.+-|+++++.+.|..+..|..--|..+...+. ..+.++.+|.|.+++|.+..+..-.+
T Consensus 621 ~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 621 TSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred cCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEE
Confidence 2 344567778999999999999999999999999999999988887766654 35788889999999999988877777
Q ss_pred EEe
Q 000085 2187 FTL 2189 (2342)
Q Consensus 2187 ~dl 2189 (2342)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 764
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=8.4e-14 Score=174.14 Aligned_cols=274 Identities=11% Similarity=0.094 Sum_probs=203.3
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCccc-ceecccCC-CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKT-LETASGHC-APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkl-l~tL~GHt-~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
.+.+++++.+.+.||.|-.||.|.+|++..+=. ...+.||. ..|.+++|+ ++..|+|.+.+|+|.-||+.+++....
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~ 105 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYN 105 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEE
Confidence 356699999999999999999999999987643 44667765 579999999 677899999999999999999765444
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccccccCCc-----eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP-----IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~-----l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
. ....+.+++++.+|.+..++.++.++.......++ ...|.-.++.|.++.|++++..+++|+.||.|++||..
T Consensus 106 ~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 106 I-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred e-cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 3 34567789999999999999998888543222111 23344456899999999999999999999999999999
Q ss_pred CCeEEEEEec-----CC-----cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2151 RGRLIRRLVG-----VD-----AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2151 TGklIrsL~g-----h~-----vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
++..+..... .. +..+.+-.|+.+ +.+...|.|..|+.....+......|...|.|++.++++.+++++
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI-~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTI-ASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSA 263 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEeecCcE-EEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEc
Confidence 9987763221 11 355555566664 455667999999986444444444599999999999999999988
Q ss_pred eCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE---EEEEecCCCCCeEEEEEecC
Q 000085 2221 VNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV---FHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2221 S~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~---L~tL~lgHs~~ItsLafSPD 2297 (2342)
+.|+. |.-+...+.+. .......|...|.+++..++
T Consensus 264 Gvd~~-----------------------------------------ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 264 GVDPK-----------------------------------------IIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred cCCCc-----------------------------------------eEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence 75443 33333322211 11122267778888888877
Q ss_pred CCEEEEEeCCCcEEEEeCCC
Q 000085 2298 NTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2298 G~~LaSGSsDGsIrVWDi~s 2317 (2342)
.|++||.|+.+.+-....
T Consensus 303 --~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 303 --ALISGGRDFTLAICSSRE 320 (691)
T ss_pred --eEEecceeeEEEEccccc
Confidence 688899998888876544
No 141
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=4.9e-14 Score=164.00 Aligned_cols=245 Identities=12% Similarity=0.102 Sum_probs=180.0
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC--EEEEEEcCCcEEEEecCCccccee
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE--IITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk--lLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
+|..++++++|-+|+||+.+... + -..+..| ..+++++.|.++-. .|.+|+.||.|.+|+...-.++.+
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~---q---lg~ll~H---agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s 122 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRK---Q---LGILLSH---AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS 122 (362)
T ss_pred cceeEeccCCCCcEEEEeccchh---h---hcceecc---ccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee
Confidence 56788999999999999976511 1 1123333 34567799998876 899999999999999999999999
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
+++|.+.|+.++.+|.|++-++.+.|+.++.||+.+++....
T Consensus 123 lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v-------------------------------------- 164 (362)
T KOG0294|consen 123 LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV-------------------------------------- 164 (362)
T ss_pred ecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee--------------------------------------
Confidence 999999999999999999999999999999999988642111
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCCCeEEEEEeCCc
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQHTLSSFTLNGV 2192 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssdGsI~I~dlnG~ 2192 (2342)
..+ .| .-+.|.|+|.|.+++.++.+ .|-+|.+.+....+.+.... +.++.|. ++..++.+..++.+.+|+.+..
T Consensus 165 ~~L-~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~ 239 (362)
T KOG0294|consen 165 LNL-KN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSD 239 (362)
T ss_pred ecc-CC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCC
Confidence 011 11 22338899999988887775 68889888776666555432 3333333 4556666777888888888754
Q ss_pred eeeeecCCCCCCeEEEEE--ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2193 LVARAKLPLSGSIGCMEI--SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2193 ~L~s~~~~Hs~~ItsLaf--SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
........|..+|.++.+ .|++.+|+++|. ||.|+||
T Consensus 240 ~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS-----------------------------------------DG~I~vW 278 (362)
T KOG0294|consen 240 TPLTEFLAHENRVKDIASYTNPEHEYLVTASS-----------------------------------------DGFIKVW 278 (362)
T ss_pred ccceeeecchhheeeeEEEecCCceEEEEecc-----------------------------------------CceEEEE
Confidence 555555669999999984 467888888863 7789999
Q ss_pred ECCCC-----eEEEEEecCCCCCeEEEEEe
Q 000085 2271 DLHTL-----KVFHVLKLGEGQDITALALN 2295 (2342)
Q Consensus 2271 DL~Tg-----k~L~tL~lgHs~~ItsLafS 2295 (2342)
|+... +.+..+. .+..++|+...
T Consensus 279 d~~~~~k~~~~~l~e~n--~~~RltCl~~~ 306 (362)
T KOG0294|consen 279 DIDMETKKRPTLLAELN--TNVRLTCLRVK 306 (362)
T ss_pred EccccccCCcceeEEee--cCCccceeeeh
Confidence 99765 3444444 24556666543
No 142
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=9.1e-14 Score=161.27 Aligned_cols=266 Identities=12% Similarity=0.070 Sum_probs=174.3
Q ss_pred cceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc----ccceecccCCCCeEEEEecC--CCCEEEEEeCCCceEEEeccC
Q 000085 1996 IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA----KTLETASGHCAPVTCLALSS--DSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 1996 I~Svt~VafSpDGklLASGS~DGsIrVWDl~tg----kll~tL~GHt~~VtcLAfSP--DG~~LaSGS~DGTVrVWDl~t 2069 (2342)
-.-+.++.|.+.|+.+|+|+.|++|+|||.++. .+....+.|.+.|..+.|.+ -|+.++++|.|+++.||.-..
T Consensus 13 ~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~ 92 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQE 92 (361)
T ss_pred cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecc
Confidence 345677999999999999999999999996543 34566788999999999976 389999999999999997642
Q ss_pred CccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEE
Q 000085 2070 AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2070 g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIW 2147 (2342)
.... .....| ....++......|+.|+|.|. |-.+++++.||+++||
T Consensus 93 ~~~~----------------------------~~~~~W---v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY 141 (361)
T KOG2445|consen 93 KSEE----------------------------AHGRRW---VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY 141 (361)
T ss_pred cccc----------------------------ccccee---EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence 1000 001112 234566777889999999985 7789999999999999
Q ss_pred ECCCCeEEE------EEe-------cC--CcEEEEEecCC---cEEEEEeCC-----CeEEEEEeC--Cce-eeee-cCC
Q 000085 2148 SIRRGRLIR------RLV-------GV--DAHAVSLSSEG---VIMTWNKLQ-----HTLSSFTLN--GVL-VARA-KLP 2200 (2342)
Q Consensus 2148 DLrTGklIr------sL~-------gh--~vssLSfSpDG---~IlVwdssd-----GsI~I~dln--G~~-L~s~-~~~ 2200 (2342)
+.-.-..+. .+. .+ ...+++|++.. ..++.+..+ +.+.+|..+ ++. .... ...
T Consensus 142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 875432222 222 01 13566776532 344555433 466777664 322 2222 224
Q ss_pred CCCCeEEEEEccC----CCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe
Q 000085 2201 LSGSIGCMEISLD----GHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK 2276 (2342)
Q Consensus 2201 Hs~~ItsLafSPD----Gk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk 2276 (2342)
|..+|+.++|.|+ ...|++++.||. ++|.+...... + +. +..... + ...++ .-+
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDgv-------~I~~v~~~~s~-i-~~-ee~~~~--------~---~~~~l-~v~ 279 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDGV-------RIFKVKVARSA-I-EE-EEVLAP--------D---LMTDL-PVE 279 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCcE-------EEEEEeeccch-h-hh-hcccCC--------C---Ccccc-ceE
Confidence 9999999999996 356777765442 22222211000 0 00 000000 0 00000 123
Q ss_pred EEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2277 VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2277 ~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
.+..+. +|.+.|..+.|+-.|..|.+.|.||.|++|..
T Consensus 280 ~vs~~~-~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 280 KVSELD-DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred Eeeecc-CCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 345555 89999999999999999999999999999983
No 143
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.4e-14 Score=163.78 Aligned_cols=229 Identities=15% Similarity=0.196 Sum_probs=175.8
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC--CCCEEEEEEcCCcEEEEecCCccc--c
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH--DKEIITGGHVDGSIKLLTSDGAKT--L 2031 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp--DGklLASGS~DGsIrVWDl~tgkl--l 2031 (2342)
-|++|+++++|++||||...... .-.....+.+|.+++-. ++|.+ .|.+||+++.||.|.||.-.+|+- .
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~---~s~ll~~L~Gh~GPVwq---v~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~ 95 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNG---QSKLLAELTGHSGPVWK---VAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA 95 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCC---CceeeeEecCCCCCeeE---EeecccccCcEeeEeecCceEEEEecCCCchhhh
Confidence 48999999999999999855411 11234456777777655 78877 799999999999999999988853 3
Q ss_pred eecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCC--ccccccccCCCCCCccccccCC---C-----------
Q 000085 2032 ETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRA--FTSRTGTIEPSSGMGTPGNSIG---S----------- 2093 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg--~~i~t~~~~~~~~V~svs~SpD---G----------- 2093 (2342)
.....|...|++++|.|. |-.|+++|.||+|.|.+.+.. .....+...|..++.++++.|. |
T Consensus 96 ~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~ 175 (299)
T KOG1332|consen 96 YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKV 175 (299)
T ss_pred hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccc
Confidence 456789999999999986 578999999999999998875 2223336678888999988885 3
Q ss_pred CCceeecCCCc-cccccC----CceEEecCCCCCeEEEEEecCC----CEEEEEeCCCcEEEEECCCC------eEEEEE
Q 000085 2094 STPANASADKS-RRRRIE----GPIHVLRGHHREILCCCVSSDL----GVVVSCSDSSDLLLHSIRRG------RLIRRL 2158 (2342)
Q Consensus 2094 ~~Las~s~D~s-~~~~i~----~~l~~L~GHs~~Vt~VafSPDg----~lLaSGS~DGtIrIWDLrTG------klIrsL 2158 (2342)
+.+++++.|.. ..|... .....|.+|.+.|+.++|.|.- .+++|||.||+|.||..+.. +++..|
T Consensus 176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f 255 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF 255 (299)
T ss_pred ceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC
Confidence 34666666654 445543 2345689999999999999973 57999999999999987632 122221
Q ss_pred ecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2159 VGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2159 ~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
...+..++||..|.++..+..++.+.+|.-+.
T Consensus 256 -~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 256 -PDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred -CcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 12378899999999999999999999998653
No 144
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.60 E-value=3.9e-14 Score=171.58 Aligned_cols=223 Identities=14% Similarity=0.155 Sum_probs=167.3
Q ss_pred CCeEEecCCCceEEEecCCCCCCCc----ccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcc--
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGAD----EWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAK-- 2029 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~----ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgk-- 2029 (2342)
...+++.+.++-+.||+........ +....-.+.+|... ...++|++... .+++|+.|++|.+||+....
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e---g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE---GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc---ccccccccccceeEeeccCCCcEEEEeccccccC
Confidence 3456677777888999854322211 22223356667652 23488998877 89999999999999987532
Q ss_pred -----cceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC
Q 000085 2030 -----TLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK 2103 (2342)
Q Consensus 2030 -----ll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~ 2103 (2342)
....+.+|.+.|..++|++- ...+++++.|+.+.|||++++.
T Consensus 214 ~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~-------------------------------- 261 (422)
T KOG0264|consen 214 DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT-------------------------------- 261 (422)
T ss_pred CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC--------------------------------
Confidence 24568899999999999984 5688999999999999998621
Q ss_pred ccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCC-eEEEEEecCC--cEEEEEecCCc-EEEEE
Q 000085 2104 SRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRG-RLIRRLVGVD--AHAVSLSSEGV-IMTWN 2178 (2342)
Q Consensus 2104 s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTG-klIrsL~gh~--vssLSfSpDG~-IlVwd 2178 (2342)
.++.+...+|++.|+|++|+|- +..|||||.|++|.+||+|+- +++.++.+|+ +..|.|||+.. +++..
T Consensus 262 ------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 262 ------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred ------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec
Confidence 1334556889999999999985 667899999999999999985 4678888875 78899999764 56666
Q ss_pred eCCCeEEEEEeC--Ccee------------eeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2179 KLQHTLSSFTLN--GVLV------------ARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2179 ssdGsI~I~dln--G~~L------------~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
..++.+.+|++. |... .-..-+|...|..+.|+|+..++++.
T Consensus 336 g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~S 391 (422)
T KOG0264|consen 336 GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIAS 391 (422)
T ss_pred ccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEE
Confidence 788999999985 2211 11222488889999999988887754
No 145
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.60 E-value=1.5e-13 Score=166.53 Aligned_cols=308 Identities=14% Similarity=0.131 Sum_probs=205.2
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccc--
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKT-- 2030 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkl-- 2030 (2342)
.|..+..++++.++++|-||+..+ ..+.+....|.+++. +++.-.+|.+|. |+.|..|..||-.-.+.
T Consensus 253 ~F~engdviTgDS~G~i~Iw~~~~------~~~~k~~~aH~ggv~---~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~ 322 (626)
T KOG2106|consen 253 TFLENGDVITGDSGGNILIWSKGT------NRISKQVHAHDGGVF---SLCMLRDGTLLS-GGKDRKIILWDDNYRKLRE 322 (626)
T ss_pred EEcCCCCEEeecCCceEEEEeCCC------ceEEeEeeecCCceE---EEEEecCccEee-cCccceEEecccccccccc
Confidence 455555677888999999998643 122333335666654 488899998777 99999999998321110
Q ss_pred --------------------------------------ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc
Q 000085 2031 --------------------------------------LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 2031 --------------------------------------l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
..+..+|.+..+.++.+|+.+.++|++.|+++++|+ ..
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~--- 398 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DH--- 398 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CC---
Confidence 012356667777777777777777777777777776 11
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
++.-. +--..++.|+.|+|.| .++.|...|...+.|.++.
T Consensus 399 --------------------------------------k~~wt-~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~ 438 (626)
T KOG2106|consen 399 --------------------------------------KLEWT-KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ 438 (626)
T ss_pred --------------------------------------ceeEE-EEecCceeEeeccCcc-eEEEeeccceEEEEecccc
Confidence 11111 1234678899999999 8999999999999999996
Q ss_pred eEEEEEe-cCCcEEEEEecCCcEEEEEeCCCeEEEEEeC--CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC
Q 000085 2153 RLIRRLV-GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN--GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229 (2342)
Q Consensus 2153 klIrsL~-gh~vssLSfSpDG~IlVwdssdGsI~I~dln--G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~ 2229 (2342)
..+..-. ..+..++.++|+|.+++.++.++.|++|.+. |..+......|..+|+.+.||+|++++.+-+-|...-.|
T Consensus 439 ~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 439 DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 6655433 3457899999999999999999999999985 655555544466899999999999999977644331111
Q ss_pred Cc----------ccccccCCCCCCccccccccccc---------cCCCCccCCCCeEEEEECCC---CeEEEEEecCCCC
Q 000085 2230 SY----------DNIQGLNSKQSGTEDFDLASDQS---------VDNNRFDFPSPSICFLDLHT---LKVFHVLKLGEGQ 2287 (2342)
Q Consensus 2230 i~----------d~Lw~l~~~~~~~iaFspd~~~s---------~ss~~ias~DGsIrIWDL~T---gk~L~tL~lgHs~ 2287 (2342)
.. +.-|.-.....+...|....-.. ......+...|.|++|...- ....+.+. +|+.
T Consensus 519 ~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~-ghs~ 597 (626)
T KOG2106|consen 519 KPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYG-GHSS 597 (626)
T ss_pred ccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeec-cccc
Confidence 00 00111000000000111000000 00011122578999987643 23345566 8999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2288 DITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2288 ~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
.|++++|..+..+|++.+.|.+|..|++
T Consensus 598 ~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 598 HVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 9999999999989998889999999984
No 146
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.59 E-value=7e-14 Score=167.01 Aligned_cols=290 Identities=22% Similarity=0.216 Sum_probs=183.4
Q ss_pred eEEecCCCceEEEecCCCCCCCc---ccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecC--------C
Q 000085 1959 ASASPASGTFLRMFKGPGGSGAD---EWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSD--------G 2027 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~---ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~--------t 2027 (2342)
.+++++.|..||+|....+.... ...+...+ ..+.+.++++.|+|+|.+||+|+.+|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L---s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~ 104 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL---SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT 104 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecc---cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc
Confidence 68899999999999854422111 22222333 3455678889999999999999999999999765 2
Q ss_pred --------cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceee
Q 000085 2028 --------AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANA 2099 (2342)
Q Consensus 2028 --------gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~ 2099 (2342)
-.....+.+|...|..++|+||+.++++|+.|.++++||+..+..
T Consensus 105 e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l--------------------------- 157 (434)
T KOG1009|consen 105 EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL--------------------------- 157 (434)
T ss_pred hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee---------------------------
Confidence 112356788999999999999999999999999999999998643
Q ss_pred cCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe--------------------
Q 000085 2100 SADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV-------------------- 2159 (2342)
Q Consensus 2100 s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~-------------------- 2159 (2342)
...+.+|...|..++|.|-++++++-+.|...+++++...+.++...
T Consensus 158 -------------~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf 224 (434)
T KOG1009|consen 158 -------------LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF 224 (434)
T ss_pred -------------EeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee
Confidence 23445666667777777767777766666655555554333222211
Q ss_pred -cCC----cEEEEEecCCcEEEEEeC----CCeE---EEEEeCCceeeeec--CC-CCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2160 -GVD----AHAVSLSSEGVIMTWNKL----QHTL---SSFTLNGVLVARAK--LP-LSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2160 -gh~----vssLSfSpDG~IlVwdss----dGsI---~I~dlnG~~L~s~~--~~-Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
... -+-++|+|||.+++.... .+.+ ..|...++.+.+.. .+ -..+...+.|+|--
T Consensus 225 hDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy---------- 294 (434)
T KOG1009|consen 225 HDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVY---------- 294 (434)
T ss_pred ecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeE----------
Confidence 000 245788999998876521 1111 11222222111100 00 12233333333210
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCcc-CCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFD-FPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ia-s~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaS 2303 (2342)
+.+..-......| ...-..+++ .....|+|||.++..++..+..-|-..|+.++|++||..|+.
T Consensus 295 ----------~elrp~~~~~~~~-----~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~v 359 (434)
T KOG1009|consen 295 ----------YELRPLSSEKFLF-----VLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLV 359 (434)
T ss_pred ----------EEecccccccccc-----ccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEE
Confidence 1111000000000 000001111 135789999999999999998889999999999999999999
Q ss_pred EeCCCcEEEEeCC
Q 000085 2304 STADKQLIVFTDP 2316 (2342)
Q Consensus 2304 GSsDGsIrVWDi~ 2316 (2342)
.+.||-..+-.+.
T Consensus 360 SS~DGyCS~vtfe 372 (434)
T KOG1009|consen 360 SSTDGFCSLVTFE 372 (434)
T ss_pred eccCCceEEEEEc
Confidence 9999987766544
No 147
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.57 E-value=6.8e-15 Score=172.99 Aligned_cols=256 Identities=14% Similarity=0.219 Sum_probs=190.0
Q ss_pred ceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC-ccccc
Q 000085 2031 LETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-SRRRR 2108 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~ 2108 (2342)
+..+.||.+.|.|++=+|.. ..++|||.||.|++||+.+..+..++ ..|.+.|..+++.. ..+++++.|. +..|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc--cceEEecCCcceeeee
Confidence 44578999999999999986 78999999999999999987665554 56667777777765 4444555554 45576
Q ss_pred cCC-ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--CcEEEEEecCCc-EEEEEeCCCeE
Q 000085 2109 IEG-PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV--DAHAVSLSSEGV-IMTWNKLQHTL 2184 (2342)
Q Consensus 2109 i~~-~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh--~vssLSfSpDG~-IlVwdssdGsI 2184 (2342)
... +.+++.+ ...+..+.-+..+..++|||. .|-|||.....+++++... .+.++.|+|--+ +++.+..++.|
T Consensus 136 ~~~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 136 IDGPPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred ccCCcceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 544 3444443 456677777777888999887 4899999988888888753 467888888765 44455588999
Q ss_pred EEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCC
Q 000085 2185 SSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2185 ~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
.+|+.. +.++.... ....-+.++|+|.+-.+++|..
T Consensus 213 vLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~E----------------------------------------- 249 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANE----------------------------------------- 249 (433)
T ss_pred EEEecccCCccceee--eeccccceecCccccceeeccc-----------------------------------------
Confidence 999986 44444433 3456678999997666666642
Q ss_pred CCeEEEEECCCCe-EEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC------hhhhhhhhhccccCCCc
Q 000085 2264 SPSICFLDLHTLK-VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS------LKVVDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk-~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs------~k~LdQLLk~GWegDGL 2336 (2342)
|..++.+|++..+ ++.+.. +|...|.+++|||.|+-+++||.|.+|+||...... ++..+..+...|+.|.-
T Consensus 250 D~nlY~~DmR~l~~p~~v~~-dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 250 DHNLYTYDMRNLSRPLNVHK-DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK 328 (433)
T ss_pred cccceehhhhhhcccchhhc-ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc
Confidence 5668888887753 455556 899999999999999999999999999999976654 34445556667777653
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.2e-13 Score=170.14 Aligned_cols=306 Identities=12% Similarity=0.130 Sum_probs=195.5
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCE-EEEEeCCCceEEEeccCCccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNF-LVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~-LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
+.|+++.|.|.+|++|+.||+||||.+.+|+++.++. ..+.|.|++|+|.+.. ++..+.+..+.|-+..-|..+....
T Consensus 403 Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~ 481 (733)
T KOG0650|consen 403 VRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGP 481 (733)
T ss_pred EEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcc
Confidence 5569999999999999999999999999999999876 3558999999997643 3333333346555554432221110
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCeE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS---SDLLLHSIRRGRL 2154 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D---GtIrIWDLrTGkl 2154 (2342)
. .....-.........++..|.....-....-++....|...|+.+.|+..|+++++...+ ..|.|+++..+..
T Consensus 482 t---~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s 558 (733)
T KOG0650|consen 482 T---KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS 558 (733)
T ss_pred h---hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc
Confidence 0 000000000000001111111111111122355667799999999999999999988765 4689999977665
Q ss_pred EEEEec--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcc
Q 000085 2155 IRRLVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYD 2232 (2342)
Q Consensus 2155 IrsL~g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d 2232 (2342)
..-|.. ..+..+.|+|....++... ...+++|++..+.+.....+....|..++++|.|..|+.|+.+...-...++
T Consensus 559 Q~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 559 QSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred cCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcc
Confidence 544432 3477889999988877765 4678999997655555555577899999999999999999876542111110
Q ss_pred ---ccc---ccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC---------CeEEEEEecCCCCC----eEEEE
Q 000085 2233 ---NIQ---GLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT---------LKVFHVLKLGEGQD----ITALA 2293 (2342)
Q Consensus 2233 ---~Lw---~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T---------gk~L~tL~lgHs~~----ItsLa 2293 (2342)
+.| .++......++|+..... .+.++.||++.|+.-.- .-++..+. +|... |..+.
T Consensus 638 lsskPyk~lr~H~~avr~Va~H~ryPL----fas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~-gH~~~~~~gVLd~~ 712 (733)
T KOG0650|consen 638 LSSKPYKTLRLHEKAVRSVAFHKRYPL----FASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR-GHEKTNDLGVLDTI 712 (733)
T ss_pred cCcchhHHhhhhhhhhhhhhhccccce----eeeecCCCcEEEEeeeeehhhhcCCceEeeeecc-CceeecccceEeec
Confidence 001 111122333344443221 12234589998875321 23455566 77644 88999
Q ss_pred EecCCCEEEEEeCCCcEEEEe
Q 000085 2294 LNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2294 fSPDG~~LaSGSsDGsIrVWD 2314 (2342)
|+|...+|+++|.||+|++|.
T Consensus 713 wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 713 WHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ccCCCceEEecCCCceEEeeC
Confidence 999999999999999999994
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.56 E-value=9e-14 Score=167.72 Aligned_cols=248 Identities=16% Similarity=0.155 Sum_probs=188.7
Q ss_pred EEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCC
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCA 2039 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~ 2039 (2342)
+++.+.|+.+++|.... . ..+. |.. ...+...-.|++......++++|+..+.|+|||+....+.+.+.+|++
T Consensus 50 vas~~gdk~~~~~~K~g-~-~~~V--p~~---~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~s 122 (673)
T KOG4378|consen 50 VASMAGDKVMRIKEKDG-K-TPEV--PRV---RKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQS 122 (673)
T ss_pred EeecCCceeEEEecccC-C-CCcc--cee---eccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcc
Confidence 46677889999997433 1 1111 111 111111223444444558999999999999999998778888999999
Q ss_pred CeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCcee-ecCCCc-cccccCCc---eE
Q 000085 2040 PVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPAN-ASADKS-RRRRIEGP---IH 2114 (2342)
Q Consensus 2040 ~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las-~s~D~s-~~~~i~~~---l~ 2114 (2342)
.|+|+.++..+.||++++..|.|.|..+.++....++.......+..+.+++..+.+.+ .+.++. ..|++.+. .+
T Consensus 123 tvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~ 202 (673)
T KOG4378|consen 123 TVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH 202 (673)
T ss_pred eeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc
Confidence 99999999999999999999999999999876666655555556678888988876644 344444 45877543 34
Q ss_pred EecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCc
Q 000085 2115 VLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV 2192 (2342)
Q Consensus 2115 ~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~ 2192 (2342)
....|..+...|||+|. ..++++.+.|..|.+||++......++.. |....++|+++|.+++.+...|.+..|++.+.
T Consensus 203 ~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 203 ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred hhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 45679999999999996 46789999999999999998777766653 66789999999999999999999999999875
Q ss_pred eeeeec-CCCCCCeEEEEEccCC
Q 000085 2193 LVARAK-LPLSGSIGCMEISLDG 2214 (2342)
Q Consensus 2193 ~L~s~~-~~Hs~~ItsLafSPDG 2214 (2342)
...... ..|...|++++|-+.-
T Consensus 283 k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 283 KAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCCceEeeecccceeEEEeeecc
Confidence 433222 2399999999998765
No 150
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.55 E-value=3.6e-14 Score=178.99 Aligned_cols=224 Identities=11% Similarity=0.122 Sum_probs=172.5
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
...|++++..+.|-+|+...... ...+..-..+.+++++++|++... +|++|+.||+|++||+...+...++.
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~r------nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~ 173 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIR------NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR 173 (839)
T ss_pred hhhheeecCCCcEEEEecCcccc------chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc
Confidence 34678889999999998543100 111222244667888899998765 99999999999999999999999999
Q ss_pred cCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceE
Q 000085 2036 GHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIH 2114 (2342)
Q Consensus 2036 GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~ 2114 (2342)
+....|..|.|+| .+.+++++...|++++||++... .+..
T Consensus 174 ~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---------------------------------------r~~~ 214 (839)
T KOG0269|consen 174 SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---------------------------------------RCEK 214 (839)
T ss_pred ccchhhhceeeccCCCceEEEecCCceEEEeeccCch---------------------------------------hHHH
Confidence 9999999999999 57899999999999999998732 3445
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE--EEEEec-CCcEEEEEecCCcEEEEE---eCCCeEEEEE
Q 000085 2115 VLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL--IRRLVG-VDAHAVSLSSEGVIMTWN---KLQHTLSSFT 2188 (2342)
Q Consensus 2115 ~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl--IrsL~g-h~vssLSfSpDG~IlVwd---ssdGsI~I~d 2188 (2342)
.+..|.++|.|+.|+|++.+|||||.|+.|+|||..+++. +.++.. ..+..+.|-|+....+.. ..+..|++|+
T Consensus 215 k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 215 KLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred HhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 6789999999999999999999999999999999986543 333332 346788888888765543 2356799999
Q ss_pred eCCceeeee-cCCCCCCeEEEEEcc-CCCEEEEEeCCCC
Q 000085 2189 LNGVLVARA-KLPLSGSIGCMEISL-DGHSALIGVNSSS 2225 (2342)
Q Consensus 2189 lnG~~L~s~-~~~Hs~~ItsLafSP-DGk~LaSGS~DGs 2225 (2342)
+.-.-+... ...|...++.++|.. |-..+.+++.|+.
T Consensus 295 vrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 295 VRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred eccccccceeeeccCccccceeccCCCceeeEeecCccH
Confidence 875443332 233999999999976 4556677766655
No 151
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.55 E-value=6e-12 Score=150.61 Aligned_cols=274 Identities=24% Similarity=0.372 Sum_probs=203.3
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEE-cCCCC-EEEEEEc-CCcEEEEecCC-cccc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSI-THDKE-IITGGHV-DGSIKLLTSDG-AKTL 2031 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~Vaf-SpDGk-lLASGS~-DGsIrVWDl~t-gkll 2031 (2342)
.+..+..++.++.+.+|+..... .....+..... ..+..+.+ ++++. +++..+. |+.+.+|+... ....
T Consensus 76 ~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 148 (466)
T COG2319 76 DGELLLSGSSDGTIKLWDLDNGE-----KLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI 148 (466)
T ss_pred CCcEEEEecCCCcEEEEEcCCCc-----eeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEE
Confidence 44555666678889999865522 00111111111 12223444 78887 5555444 99999999998 7888
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeC-CCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
..+.+|...|.+++|+|++.++++++. |+++++|++..+
T Consensus 149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 188 (466)
T COG2319 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG---------------------------------------- 188 (466)
T ss_pred EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC----------------------------------------
Confidence 889999999999999999999999986 999999999862
Q ss_pred CceEEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCeEEE-EEecCCcE-EEEEecCCcEEEEEeCCCeEEEE
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLG-VVVSCSDSSDLLLHSIRRGRLIR-RLVGVDAH-AVSLSSEGVIMTWNKLQHTLSSF 2187 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~-lLaSGS~DGtIrIWDLrTGklIr-sL~gh~vs-sLSfSpDG~IlVwdssdGsI~I~ 2187 (2342)
..+..+.+|...|.+++|+|++. .+++++.|+.|++||...+..+. .+.+|... ...|++++..++....++.+++|
T Consensus 189 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 268 (466)
T COG2319 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLW 268 (466)
T ss_pred ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEe
Confidence 23445566999999999999998 56666999999999999888888 67776533 44799999888888889999999
Q ss_pred EeCCce--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCC
Q 000085 2188 TLNGVL--VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSP 2265 (2342)
Q Consensus 2188 dlnG~~--L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DG 2265 (2342)
+..... +... ..|...|.++.|+|++..+++++. |+
T Consensus 269 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~-----------------------------------------d~ 306 (466)
T COG2319 269 DLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSS-----------------------------------------DG 306 (466)
T ss_pred eecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeC-----------------------------------------CC
Confidence 987433 2322 458899999999999999888653 34
Q ss_pred eEEEEECCCCeEEEEEe-cCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCC
Q 000085 2266 SICFLDLHTLKVFHVLK-LGEGQDITALALNKDNTNLLVS-TADKQLIVFTDPAL 2318 (2342)
Q Consensus 2266 sIrIWDL~Tgk~L~tL~-lgHs~~ItsLafSPDG~~LaSG-SsDGsIrVWDi~sL 2318 (2342)
.+.+||..+........ ..|...+..+.|.+++..++.+ ..|+.+.+|+....
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 307 TVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred cEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 58889888776555543 3677789999994343566666 68899999996655
No 152
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=4.4e-14 Score=173.98 Aligned_cols=245 Identities=17% Similarity=0.173 Sum_probs=171.7
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC--------cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEe
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG--------AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWR 2066 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t--------gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWD 2066 (2342)
+..++..+.|.+....|++++.||+|.+|+++. -+.+.++.+|.++|.|+++.+++.+++||+.||+|+.|+
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~ 372 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN 372 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence 444556689999999999999999999999932 145678999999999999999999999999999999998
Q ss_pred ccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrI 2146 (2342)
+.... .|+.. .+.......+.||++.|+.+++|.....|++|+.||+++.
T Consensus 373 ~p~n~------------------dp~ds------------~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~ 422 (577)
T KOG0642|consen 373 LPPNQ------------------DPDDS------------YDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRL 422 (577)
T ss_pred cCCCC------------------Ccccc------------cCcchhccceeccccceeeeeecccccceeeecCCceEEe
Confidence 86311 00000 0111234568999999999999999999999999999999
Q ss_pred EECCCCeEEEEEec---CC-cEEEEEecCC-cEEEEEeCCC-----------eEEEEEeCCceeeeecCCCCCCeEEEEE
Q 000085 2147 HSIRRGRLIRRLVG---VD-AHAVSLSSEG-VIMTWNKLQH-----------TLSSFTLNGVLVARAKLPLSGSIGCMEI 2210 (2342)
Q Consensus 2147 WDLrTGklIrsL~g---h~-vssLSfSpDG-~IlVwdssdG-----------sI~I~dlnG~~L~s~~~~Hs~~ItsLaf 2210 (2342)
|+...... .++.. ++ ...+.+-... .+.+.+...+ .+.++....... ......+.-+..
T Consensus 423 w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~----~~~~~~in~vVs 497 (577)
T KOG0642|consen 423 WEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG----PRRYPQINKVVS 497 (577)
T ss_pred eccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc----ccccCccceEEe
Confidence 99876655 33322 11 1223222111 1111111111 111111110000 001234455555
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeE
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDIT 2290 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~It 2290 (2342)
+|.+.+.+++. .|+.|+++|..++++++... .|...++
T Consensus 498 ~~~~~~~~~~h-----------------------------------------ed~~Ir~~dn~~~~~l~s~~-a~~~svt 535 (577)
T KOG0642|consen 498 HPTADITFTAH-----------------------------------------EDRSIRFFDNKTGKILHSMV-AHKDSVT 535 (577)
T ss_pred cCCCCeeEecc-----------------------------------------cCCceecccccccccchhee-eccceec
Confidence 55555554432 47889999999999999988 8999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2291 ALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2291 sLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
++++.|+|.+|++|+.||.+++|...
T Consensus 536 slai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 536 SLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred ceeecCCCceEEeecCCceeehhhcc
Confidence 99999999999999999999999953
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.53 E-value=2.6e-13 Score=163.82 Aligned_cols=266 Identities=13% Similarity=0.195 Sum_probs=193.0
Q ss_pred cCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCc--cc--ceecccC
Q 000085 1963 PASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGA--KT--LETASGH 2037 (2342)
Q Consensus 1963 sSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tg--kl--l~tL~GH 2037 (2342)
++++..+++|+........++. |...-..+..++|+.... .+++-+.|..+++|.-... +. +..+.|
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~-------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g- 79 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYV-------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG- 79 (673)
T ss_pred eccCCceEEeecccccCccccc-------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc-
Confidence 3445578999865422222211 111111245588888775 3444456888999975432 12 222333
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEec
Q 000085 2038 CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLR 2117 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~ 2117 (2342)
+.-.|++......|+++|+..++|+|||++.. . ....+.
T Consensus 80 -d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-l---------------------------------------~hr~lk 118 (673)
T KOG4378|consen 80 -DNAFCVACASQSLYEISGGQSGCVKIWDLRAK-L---------------------------------------IHRFLK 118 (673)
T ss_pred -chHHHHhhhhcceeeeccCcCceeeehhhHHH-H---------------------------------------Hhhhcc
Confidence 24456666656699999999999999999852 2 123468
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CcEEEEEecCCcEEE-EEeCCCeEEEEEeCCce
Q 000085 2118 GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV---DAHAVSLSSEGVIMT-WNKLQHTLSSFTLNGVL 2193 (2342)
Q Consensus 2118 GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh---~vssLSfSpDG~IlV-wdssdGsI~I~dlnG~~ 2193 (2342)
+|+..|+||.++....+|++++..|.|.|+.+.++.....|... .++.+.+++..+.++ ....+|.+++|+++|..
T Consensus 119 dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s 198 (673)
T KOG4378|consen 119 DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS 198 (673)
T ss_pred CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC
Confidence 99999999999999999999999999999999999877777543 366889999887655 44677999999999854
Q ss_pred ee-eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEEC
Q 000085 2194 VA-RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDL 2272 (2342)
Q Consensus 2194 L~-s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL 2272 (2342)
.. .....|..+...|+|+|....|++.- | .|..|.+||.
T Consensus 199 p~~~~~~~HsAP~~gicfspsne~l~vsV--G--------------------------------------~Dkki~~yD~ 238 (673)
T KOG4378|consen 199 PIFHASEAHSAPCRGICFSPSNEALLVSV--G--------------------------------------YDKKINIYDI 238 (673)
T ss_pred cccchhhhccCCcCcceecCCccceEEEe--c--------------------------------------ccceEEEeec
Confidence 33 22223999999999999877665431 1 2788999999
Q ss_pred CCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2273 HTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2273 ~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
.+.+....+. -..+.+.++|+++|.+|+.|+..|.|+.||.....
T Consensus 239 ~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 239 RSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ccccccceee--ecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 9877777666 34578999999999999999999999999976653
No 154
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=8.9e-13 Score=165.16 Aligned_cols=344 Identities=12% Similarity=0.104 Sum_probs=231.2
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
...+|.+-.++.|-+|+... .|-....+.+ ..-+++..++|++.++ |.+.+.+|+|.-||+.+++....+..
T Consensus 37 S~~lAvsRt~g~IEiwN~~~-----~w~~~~vi~g--~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~~~d~ 108 (691)
T KOG2048|consen 37 SNQLAVSRTDGNIEIWNLSN-----NWFLEPVIHG--PEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKYNIDS 108 (691)
T ss_pred CCceeeeccCCcEEEEccCC-----CceeeEEEec--CCCCceeeEEEccCCe-EEeecCCceEEEEecccCceeEEecC
Confidence 34467778889999998654 5655554444 3345667799995555 55556799999999999999999988
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc-ccCCCCCCccccccCCCCCceeecCCC-ccccccCCceE
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG-TIEPSSGMGTPGNSIGSSTPANASADK-SRRRRIEGPIH 2114 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i~~~l~ 2114 (2342)
..+.|++++.+|.+..++.|+.||.+...+...+...... .....+.+.+++|++++..++.|+.|+ ++.|+....-.
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence 8999999999999999999999997777777766544433 334457789999999999999999999 66787644321
Q ss_pred Ee------c----CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCC
Q 000085 2115 VL------R----GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQH 2182 (2342)
Q Consensus 2115 ~L------~----GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdG 2182 (2342)
.. . +...-|++|.|-.+ ..+++|..-|+|.+||...|.+++++..|. +.+++.++++..++.++.++
T Consensus 189 ~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 189 LHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred EEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCC
Confidence 11 1 12335777777754 468999999999999999999999988775 67888889988999898999
Q ss_pred eEEEEEeCCcee---e-eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCC
Q 000085 2183 TLSSFTLNGVLV---A-RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNN 2258 (2342)
Q Consensus 2183 sI~I~dlnG~~L---~-s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~ 2258 (2342)
.+..|...+..- . ..+..|...|.+++..++ .+++|+.|.......... .....+. ....|........+..
T Consensus 268 ~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~-~~~~~h~-~~~~~p~~~~v~~a~~ 343 (691)
T KOG2048|consen 268 KIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE-FKNMDHR-QKNLFPASDRVSVAPE 343 (691)
T ss_pred ceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc-cCchhhh-ccccccccceeecCcc
Confidence 988888765421 1 222338899999999877 788777655422111110 0000000 0001111111000000
Q ss_pred C--cc-CCCCeEEEEECCCC--------eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2259 R--FD-FPSPSICFLDLHTL--------KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2259 ~--ia-s~DGsIrIWDL~Tg--------k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
. .. -.+..+.+|.+.+. ..+..+.......|.+.+.||+|++|+.++- ..+++|.
T Consensus 344 ~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~ 409 (691)
T KOG2048|consen 344 NRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYR 409 (691)
T ss_pred ceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEE
Confidence 0 00 02445556665543 1122222234567999999999998887763 3455555
No 155
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.52 E-value=2.5e-13 Score=156.32 Aligned_cols=231 Identities=15% Similarity=0.136 Sum_probs=161.9
Q ss_pred ccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2035 SGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
..|.+.|..+.+.+ .|+++++|+.||.|.|||+.+...-... .+++ +.. ..+ ..
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s-----------------~li~-----k~~-c~v--~~ 94 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS-----------------GLIA-----KHK-CIV--AK 94 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc-----------------ccee-----hee-eec--cc
Confidence 45889999999987 5899999999999999999874211000 0000 000 000 01
Q ss_pred EEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecC---CcEEEEEeCCCeEEEEE
Q 000085 2114 HVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSE---GVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpD---G~IlVwdssdGsI~I~d 2188 (2342)
..-.+|.-.|..+.|-| |..++.++|-|.+++|||..|.+....|.-.+ ++.-++||= -.+++.+.++-+|++-+
T Consensus 95 ~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 95 QHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred cCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence 22367899999999998 67889999999999999999998888776543 555555553 34666777778888888
Q ss_pred eCCceeeeecCCCCCCeEEEEEccCCCEEE-EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2189 LNGVLVARAKLPLSGSIGCMEISLDGHSAL-IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~~ItsLafSPDGk~La-SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
+..........+|.+.|.++.|+|...+++ +|+.|+. .++|++... .|+.
T Consensus 175 i~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~------irlWDiRra-----------------------sgcf 225 (397)
T KOG4283|consen 175 IASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA------IRLWDIRRA-----------------------SGCF 225 (397)
T ss_pred ccCCcceeeeccccCceEEEEeccCceeEEEecCCCce------EEEEEeecc-----------------------ccee
Confidence 876666666677999999999999988865 4443333 233433321 2334
Q ss_pred EEEECCCCeEEEEE--ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2268 CFLDLHTLKVFHVL--KLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2268 rIWDL~Tgk~L~tL--~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
++.|..+++....+ ...|.+.|++++|+.|+.++++++.|..+++|+..+.+
T Consensus 226 ~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 226 RVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred EEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 44444333221111 23688899999999999999999999999999966554
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.52 E-value=4.3e-13 Score=162.01 Aligned_cols=277 Identities=14% Similarity=0.125 Sum_probs=191.4
Q ss_pred ceeEEEEEcCCCC--EEEEEEcCCcEEEEecCCcc----cceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccC
Q 000085 1997 RSSAVVSITHDKE--IITGGHVDGSIKLLTSDGAK----TLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 1997 ~Svt~VafSpDGk--lLASGS~DGsIrVWDl~tgk----ll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~t 2069 (2342)
..+++++|+|..+ ++++|..-|.|-+||+.+.+ -+..+..|..+|.++.|+|. -..+++.|.||+|++-|+++
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~ 266 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG 266 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence 3466799999875 89999999999999996332 34557789999999999995 56899999999999999998
Q ss_pred Ccccccccc-CCCCCCccccccCCCCCc-eeecCCCccccc--cC-CceEEecCCCCCeEEEEEecCC-CEEEEEeCCCc
Q 000085 2070 AFTSRTGTI-EPSSGMGTPGNSIGSSTP-ANASADKSRRRR--IE-GPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSD 2143 (2342)
Q Consensus 2070 g~~i~t~~~-~~~~~V~svs~SpDG~~L-as~s~D~s~~~~--i~-~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGt 2143 (2342)
......... ........+.++.+...+ +....+....|+ .. .....+.-|...|+.|+++|.. .+++|||.|++
T Consensus 267 ~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T 346 (498)
T KOG4328|consen 267 NISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT 346 (498)
T ss_pred hhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc
Confidence 643222211 122233444555544443 333344222232 22 3355667788999999999975 56899999999
Q ss_pred EEEEECCCCeE-----EEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeC---C--ceeeeecCCCCC------CeE
Q 000085 2144 LLLHSIRRGRL-----IRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLN---G--VLVARAKLPLSG------SIG 2206 (2342)
Q Consensus 2144 IrIWDLrTGkl-----IrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dln---G--~~L~s~~~~Hs~------~It 2206 (2342)
++|||+|.-.. +.++.. +.+..+.|||+|-.++..+.+..|++|+.. . .++..+. |.. ..-
T Consensus 347 ~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~--Hn~~t~RwlT~f 424 (498)
T KOG4328|consen 347 AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP--HNNRTGRWLTPF 424 (498)
T ss_pred eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee--ccCcccccccch
Confidence 99999986432 333332 348899999998889999999999999973 1 1111111 322 123
Q ss_pred EEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC
Q 000085 2207 CMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG 2286 (2342)
Q Consensus 2207 sLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs 2286 (2342)
...|.|+..++++|-. -..|-|+|-..++.+..+.....
T Consensus 425 KA~W~P~~~li~vg~~-----------------------------------------~r~IDv~~~~~~q~v~el~~P~~ 463 (498)
T KOG4328|consen 425 KAAWDPDYNLIVVGRY-----------------------------------------PRPIDVFDGNGGQMVCELHDPES 463 (498)
T ss_pred hheeCCCccEEEEecc-----------------------------------------CcceeEEcCCCCEEeeeccCccc
Confidence 4578898888887731 23488999988887777653333
Q ss_pred CCeEEE-EEecCCCEEEEE-eCCCcEEEEeCC
Q 000085 2287 QDITAL-ALNKDNTNLLVS-TADKQLIVFTDP 2316 (2342)
Q Consensus 2287 ~~ItsL-afSPDG~~LaSG-SsDGsIrVWDi~ 2316 (2342)
..|.++ .|+|-+..+++| +..|.|+||...
T Consensus 464 ~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 464 STIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccceeecccccceeccCCccceEEEEecC
Confidence 355554 699988745554 678999999854
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.51 E-value=4.9e-14 Score=164.52 Aligned_cols=252 Identities=14% Similarity=0.181 Sum_probs=165.5
Q ss_pred EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccCCCCCCcccc
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPG 2088 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs 2088 (2342)
++|.|+.-|.|+|.|+.++++...+.||.+.|..+.+.|+. +++++||.|.+|++|++++..++..+
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf------------ 174 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF------------ 174 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe------------
Confidence 88999999999999999999999999999999999999974 79999999999999999986543221
Q ss_pred ccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEE
Q 000085 2089 NSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSL 2168 (2342)
Q Consensus 2089 ~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSf 2168 (2342)
.-+.||.+.|.++.|+.+|.+++||+.|.++++|++...+....++ ....+
T Consensus 175 -------------------------GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE----~s~~~ 225 (385)
T KOG1034|consen 175 -------------------------GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE----LSITY 225 (385)
T ss_pred -------------------------cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh----hhccc
Confidence 1247899999999999999999999999999999997544322222 23456
Q ss_pred ecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc----cccccc-------
Q 000085 2169 SSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY----DNIQGL------- 2237 (2342)
Q Consensus 2169 SpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~----d~Lw~l------- 2237 (2342)
++++...-+-.. ..++.+... .-.|...|.|+.|- |.++++-|-++.+..|.. ..+.+.
T Consensus 226 ~~~~t~~pfpt~--~~~fp~fst------~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~ 295 (385)
T KOG1034|consen 226 SPNKTTRPFPTP--KTHFPDFST------TDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESAT 295 (385)
T ss_pred CCCCccCcCCcc--ccccccccc------cccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccce
Confidence 666654322111 111222111 11177777777775 456664432222111111 000000
Q ss_pred --------CCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEE--EEe-cCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2238 --------NSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFH--VLK-LGEGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2238 --------~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~--tL~-lgHs~~ItsLafSPDG~~LaSGSs 2306 (2342)
.......+.|..+.. ..........|.|++||+...++.. ++. ...+..|+..+|+.||..|+..++
T Consensus 296 Ti~~~~~~~~c~iWfirf~~d~~--~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd 373 (385)
T KOG1034|consen 296 TILGEFDYPMCDIWFIRFAFDPW--QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD 373 (385)
T ss_pred eeeeEeccCccceEEEEEeecHH--HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC
Confidence 000011111111110 0111122357999999998866522 221 022467999999999999999999
Q ss_pred CCcEEEEe
Q 000085 2307 DKQLIVFT 2314 (2342)
Q Consensus 2307 DGsIrVWD 2314 (2342)
|++|.-||
T Consensus 374 d~~Vwrwd 381 (385)
T KOG1034|consen 374 DGTVWRWD 381 (385)
T ss_pred CCcEEEEE
Confidence 99999998
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=8.8e-14 Score=182.23 Aligned_cols=239 Identities=18% Similarity=0.215 Sum_probs=185.9
Q ss_pred EEEEcCCCC----EEEEEEcCCcEEEEecCC---c---ccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccC
Q 000085 2001 VVSITHDKE----IITGGHVDGSIKLLTSDG---A---KTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2001 ~VafSpDGk----lLASGS~DGsIrVWDl~t---g---kll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~t 2069 (2342)
.++|.+.|. +||+|..||.|.+||... + ..+.+...|++.|..+.|++.. +.|++|+.||.|.|||+..
T Consensus 69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn 148 (1049)
T KOG0307|consen 69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNK 148 (1049)
T ss_pred eeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCC
Confidence 488887776 599999999999999765 2 2456778899999999999975 5999999999999999987
Q ss_pred CccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEE
Q 000085 2070 AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2070 g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWD 2148 (2342)
.....+. . -..-.+.|.|++|+.. ...+++++.+|.+.|||
T Consensus 149 ~~tP~~~---------------~-----------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 149 PETPFTP---------------G-----------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred cCCCCCC---------------C-----------------------CCCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence 4211110 0 0223578999999865 56788999999999999
Q ss_pred CCCCeEEEEEecCC----cEEEEEecCCcEEEEEeC--C--CeEEEEEeCC--ceeeeecCCCCCCeEEEEEccCC-CEE
Q 000085 2149 IRRGRLIRRLVGVD----AHAVSLSSEGVIMTWNKL--Q--HTLSSFTLNG--VLVARAKLPLSGSIGCMEISLDG-HSA 2217 (2342)
Q Consensus 2149 LrTGklIrsL~gh~----vssLSfSpDG~IlVwdss--d--GsI~I~dlnG--~~L~s~~~~Hs~~ItsLafSPDG-k~L 2217 (2342)
++..+.+-.+..+. ...++|+|++...++-.. + -.|.+||+.. ..+. ....|...|.+|.|++.+ .++
T Consensus 191 lr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k-~~~~H~~GilslsWc~~D~~ll 269 (1049)
T KOG0307|consen 191 LRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK-ILEGHQRGILSLSWCPQDPRLL 269 (1049)
T ss_pred ccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh-hhcccccceeeeccCCCCchhh
Confidence 99887776665443 568999999975554422 2 3689999752 2222 223599999999999977 566
Q ss_pred EEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecC
Q 000085 2218 LIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2218 aSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
++++ .|+.|.+|+.++++.+..+. ..+..+..+.|+|.
T Consensus 270 lSsg-----------------------------------------kD~~ii~wN~~tgEvl~~~p-~~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 270 LSSG-----------------------------------------KDNRIICWNPNTGEVLGELP-AQGNWCFDVQWCPR 307 (1049)
T ss_pred hccc-----------------------------------------CCCCeeEecCCCceEeeecC-CCCcceeeeeecCC
Confidence 6443 27889999999999999999 67789999999998
Q ss_pred CC-EEEEEeCCCcEEEEeCCCCCh
Q 000085 2298 NT-NLLVSTADKQLIVFTDPALSL 2320 (2342)
Q Consensus 2298 G~-~LaSGSsDGsIrVWDi~sLs~ 2320 (2342)
.. .+++.+-||.|-|+.+.+...
T Consensus 308 ~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 308 NPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred CcchhhhheeccceeeeeeecCCc
Confidence 76 677789999999999877753
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.50 E-value=4.1e-11 Score=143.43 Aligned_cols=307 Identities=22% Similarity=0.322 Sum_probs=215.3
Q ss_pred eEEecCC-CceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEc-CCcEEEEecCCcccceeccc
Q 000085 1959 ASASPAS-GTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHV-DGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1959 ~LaSsSs-D~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~-DGsIrVWDl~tgkll~tL~G 2036 (2342)
.+...+. ++.+++|+... .......+..|.. .+..++|+|+++.+++++. |+.+++|+...+..+..+.+
T Consensus 125 ~~~~~~~~d~~~~~~~~~~-----~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 125 ILLASSSLDGTVKLWDLST-----PGKLIRTLEGHSE---SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred EEeccCCCCccEEEEEecC-----CCeEEEEEecCcc---cEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc
Confidence 3444344 88999998543 0111122233333 3446999999998888875 99999999999889999999
Q ss_pred CCCCeEEEEecCCCC-EEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccccC--C-
Q 000085 2037 HCAPVTCLALSSDSN-FLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE--G- 2111 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~--~- 2111 (2342)
|...|.+++|+|++. .+++++.|++|++||...+.........+.... ...+++++..++++..++. ..|+.. .
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 999999999999998 566669999999998885554442223333332 2278888866666666654 445543 2
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe--cCC--cEEEEEecCCcEEEEE-eCCCeEEE
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV--GVD--AHAVSLSSEGVIMTWN-KLQHTLSS 2186 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~--gh~--vssLSfSpDG~IlVwd-ssdGsI~I 2186 (2342)
....+.+|...|.++.|+|++..+++++.|+.+.+||..+........ .|. +..+.+.+++..++.. ..++.+.+
T Consensus 276 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 355 (466)
T COG2319 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355 (466)
T ss_pred EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEe
Confidence 134446889999999999998888889999999999999887766665 444 5666663332444444 46677888
Q ss_pred EEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe
Q 000085 2187 FTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2187 ~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
|+..... ..........+..+.+++ . ....+. ...++.
T Consensus 356 ~~~~~~~-~~~~~~~~~~~~~~~~~~-~-~~~~~~---------------------------------------~~~~~~ 393 (466)
T COG2319 356 WDLRTGK-PLKTLEGHSNVLSVSFSP-D-GRVVSS---------------------------------------GSTDGT 393 (466)
T ss_pred eecCCCc-eeEEecCCceEEEEEECC-C-CCEEEE---------------------------------------ecCCCc
Confidence 8876543 111111222277777777 4 333220 012678
Q ss_pred EEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2267 ICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2267 IrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
+.+|+........... .+...+....+++++..+++++.++.+++|+...
T Consensus 394 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 394 VRLWDLSTGSLLRNLD-GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eEEEecccCeeeeecc-CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 9999999988777766 3327899999999999999999999999999655
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.48 E-value=7.4e-13 Score=159.82 Aligned_cols=229 Identities=17% Similarity=0.169 Sum_probs=160.6
Q ss_pred CCCEEEEEEcCCcEEEEecCCcc---c------------------ceecccCCCCeEEEEecCC-CCEEEEEeCCCceEE
Q 000085 2007 DKEIITGGHVDGSIKLLTSDGAK---T------------------LETASGHCAPVTCLALSSD-SNFLVTGSQDTTILL 2064 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~tgk---l------------------l~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrV 2064 (2342)
-|+++|.|+.|..|.|||++-.. + -..-.+|++.|..++|+.+ .+.|+|||.|.||++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 35699999999999999975211 0 0123479999999999875 468999999999999
Q ss_pred EeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCc
Q 000085 2065 WRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSD 2143 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGt 2143 (2342)
||+.+++ +..++..|.+.|.++.|+|. ...+++||.|++
T Consensus 271 WD~~~g~----------------------------------------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 271 WDVDTGK----------------------------------------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT 310 (463)
T ss_pred EEcCCCC----------------------------------------cceehhhcCCceeEEEecCCCceEEEeccccce
Confidence 9999964 34455679999999999985 678899999999
Q ss_pred EEEEECCCCeE-EEEEec-CCcEEEEEecCCc-EEEEEeCCCeEEEEEeC--CceeeeecCCCCCCeEEEEEccCCCEEE
Q 000085 2144 LLLHSIRRGRL-IRRLVG-VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLN--GVLVARAKLPLSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2144 IrIWDLrTGkl-IrsL~g-h~vssLSfSpDG~-IlVwdssdGsI~I~dln--G~~L~s~~~~Hs~~ItsLafSPDGk~La 2218 (2342)
|.+.|.|.-.. -..++. .++..++|.+... .++.+..+|.++-|++. |+.+- ....|.+.|.++++++.-..++
T Consensus 311 V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw-t~~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 311 VALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW-TLKAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred EEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee-EEEeccCCcceEEecCCCCcce
Confidence 99999984211 111221 2356677776554 44555677888888875 32222 2234999999999987655544
Q ss_pred EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC---CCeEEEEEe
Q 000085 2219 IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG---QDITALALN 2295 (2342)
Q Consensus 2219 SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs---~~ItsLafS 2295 (2342)
+.+ +.|+.|++|++..-..-.+. .|. +...|.++.
T Consensus 390 ~t~----------------------------------------s~d~~Vklw~~~~~~~~~v~--~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 390 STA----------------------------------------STDKVVKLWKFDVDSPKSVK--EHSFKLGRLHCFALD 427 (463)
T ss_pred eec----------------------------------------cccceEEEEeecCCCCcccc--cccccccceeecccC
Confidence 321 13788999998654332111 121 236677778
Q ss_pred cCCC-EEEEEeCCCcEEEEeCCCC
Q 000085 2296 KDNT-NLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2296 PDG~-~LaSGSsDGsIrVWDi~sL 2318 (2342)
|+-. +++.||..+.++|||+-..
T Consensus 428 ~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CCcceEEEecCccceEEEeecccC
Confidence 8764 5667888889999996444
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.48 E-value=8.1e-13 Score=156.53 Aligned_cols=198 Identities=17% Similarity=0.207 Sum_probs=152.7
Q ss_pred EEEEcCCCC--EEEEEEcCCcEEEEecCC----------------cccceecccCCCCeEEEEecCC-CCEEEEEeCCCc
Q 000085 2001 VVSITHDKE--IITGGHVDGSIKLLTSDG----------------AKTLETASGHCAPVTCLALSSD-SNFLVTGSQDTT 2061 (2342)
Q Consensus 2001 ~VafSpDGk--lLASGS~DGsIrVWDl~t----------------gkll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGT 2061 (2342)
-+..++-|+ +.++=+..|.|+||++.. .+.+.++.+|.+.=..|+|||- ...|+||..-+.
T Consensus 156 Rvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~ 235 (440)
T KOG0302|consen 156 RVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKG 235 (440)
T ss_pred eeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccc
Confidence 355555554 666667789999999742 2456788999999999999993 335888888889
Q ss_pred eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeC
Q 000085 2062 ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSD 2140 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~ 2140 (2342)
|++|...++.- .+. ...+.+|+..|-.++|||. ...++|||-
T Consensus 236 I~lw~~~~g~W-----------------------------------~vd--~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 236 IHLWEPSTGSW-----------------------------------KVD--QRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred eEeeeeccCce-----------------------------------eec--CccccccccchhhhccCCccCceEEeeec
Confidence 99999877421 111 1235679999999999996 568899999
Q ss_pred CCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2141 SSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2141 DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
||+|+|||+|.+.... ++.. ..|.+.|+.|.|+.+-.+|++|
T Consensus 279 DgsIrIWDiRs~~~~~--------------------------~~~~------------kAh~sDVNVISWnr~~~lLasG 320 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKA--------------------------AVST------------KAHNSDVNVISWNRREPLLASG 320 (440)
T ss_pred CceEEEEEecCCCccc--------------------------eeEe------------eccCCceeeEEccCCcceeeec
Confidence 9999999998763211 1100 1178899999999988888888
Q ss_pred eCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC---CeEEEEEecCCCCCeEEEEEecC
Q 000085 2221 VNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT---LKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2221 S~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T---gk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
+. ||+++|||+++ ++++..++ .|..+|++|.|+|.
T Consensus 321 ~D-----------------------------------------dGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 321 GD-----------------------------------------DGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPH 358 (440)
T ss_pred CC-----------------------------------------CceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccc
Confidence 62 77899999975 67788898 89999999999995
Q ss_pred -CCEEEEEeCCCcEEEEeC
Q 000085 2298 -NTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2298 -G~~LaSGSsDGsIrVWDi 2315 (2342)
...|+++|.|..|.+||+
T Consensus 359 e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 359 EDSVIAASGEDNQITIWDL 377 (440)
T ss_pred cCceEEeccCCCcEEEEEe
Confidence 467889999999999994
No 162
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=7.8e-13 Score=155.54 Aligned_cols=270 Identities=14% Similarity=0.114 Sum_probs=171.5
Q ss_pred CEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecC--CCCEEEEEeCCCceEEEeccCCccccccc-cCC-CCCC
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSS--DSNFLVTGSQDTTILLWRIHRAFTSRTGT-IEP-SSGM 2084 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSP--DG~~LaSGS~DGTVrVWDl~tg~~i~t~~-~~~-~~~V 2084 (2342)
..+|+|...|+|++||..+++.++.+.+|...+..+.|.. ....+.+|+.||+|++||++.......+. ..+ +.+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4688889999999999999999999999999999999987 46789999999999999999865544431 122 2334
Q ss_pred ccccccCCCCCceeecCC-----CccccccCCc---e-EEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCe-
Q 000085 2085 GTPGNSIGSSTPANASAD-----KSRRRRIEGP---I-HVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGR- 2153 (2342)
Q Consensus 2085 ~svs~SpDG~~Las~s~D-----~s~~~~i~~~---l-~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGk- 2153 (2342)
.++...-.++.++.+..- ....|+.... + .....|.+.|++++|+|. .++|+|||.||.|.++|+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 444444345555555322 1233554322 2 234579999999999995 6789999999999999997542
Q ss_pred ---EEEEEecC-CcEEEEEecCCcEEEEE-eCCCeEEEEEeCC-ceeeeecCC-----------CCCCeEEEEEccCCCE
Q 000085 2154 ---LIRRLVGV-DAHAVSLSSEGVIMTWN-KLQHTLSSFTLNG-VLVARAKLP-----------LSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2154 ---lIrsL~gh-~vssLSfSpDG~IlVwd-ssdGsI~I~dlnG-~~L~s~~~~-----------Hs~~ItsLafSPDGk~ 2216 (2342)
++.++... .+..+.|..++.-.+|. ...+...+|+++. ........+ ....+.......++..
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 23333322 36677787777433444 3446677777752 111110000 0000111111112222
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE-EC---CCCeEEEEEecCCCCCeEEE
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL-DL---HTLKVFHVLKLGEGQDITAL 2292 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW-DL---~Tgk~L~tL~lgHs~~ItsL 2292 (2342)
.++++.++ ..+.+... |. ..++.+..+..+|..-|+++
T Consensus 281 ~~l~g~~~--------------------------------------n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i 322 (376)
T KOG1188|consen 281 CALAGTDS--------------------------------------NKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI 322 (376)
T ss_pred EEEecccc--------------------------------------CceeEEEeeecccccccCccccccCCcHHHHHHH
Confidence 22222111 11222222 21 23445566665678889999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2293 ALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2293 afSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
.|...+..+.|||+||.+.+|..+
T Consensus 323 ~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 323 LFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred hhhcccceeeccCCCceEEEEecC
Confidence 999999999999999999999943
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.8e-12 Score=150.54 Aligned_cols=193 Identities=14% Similarity=0.202 Sum_probs=147.3
Q ss_pred eEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCC
Q 000085 2041 VTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHH 2120 (2342)
Q Consensus 2041 VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs 2120 (2342)
-.|+.|++.|.+|+.|..||.|.|||+.+.. .-..+.+|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~----------------------------------------iar~lsaH~ 65 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR----------------------------------------IARMLSAHV 65 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc----------------------------------------hhhhhhccc
Confidence 6899999999999999999999999998842 223568899
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCc--EEEEEeCCCeEEEEEeCCceeeee
Q 000085 2121 REILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGV--IMTWNKLQHTLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~--IlVwdssdGsI~I~dlnG~~L~s~ 2197 (2342)
.+|+|++||+||+.++|+|.|..|.+||+..|.+++.+.-. .+..+.+.|... .++.-... .-.+.++.. .....
T Consensus 66 ~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~-sp~vi~~s~-~~h~~ 143 (405)
T KOG1273|consen 66 RPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEE-SPVVIDFSD-PKHSV 143 (405)
T ss_pred cceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecC-CcEEEEecC-Cceee
Confidence 99999999999999999999999999999999999988764 467777777442 23322222 222333321 11110
Q ss_pred cC-C----CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEEC
Q 000085 2198 KL-P----LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDL 2272 (2342)
Q Consensus 2198 ~~-~----Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL 2272 (2342)
.. . .+..-.+..|.+.|+++++|.. .|.+.|+|.
T Consensus 144 Lp~d~d~dln~sas~~~fdr~g~yIitGts-----------------------------------------KGkllv~~a 182 (405)
T KOG1273|consen 144 LPKDDDGDLNSSASHGVFDRRGKYIITGTS-----------------------------------------KGKLLVYDA 182 (405)
T ss_pred ccCCCccccccccccccccCCCCEEEEecC-----------------------------------------cceEEEEec
Confidence 00 0 1122233468888999998852 477999999
Q ss_pred CCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2273 HTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2273 ~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
.+.+++..+.......|..+.|+..|++|+.-+.|..|++|+..
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 99999999884444789999999999999999999999999965
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.46 E-value=1.6e-12 Score=154.55 Aligned_cols=213 Identities=17% Similarity=0.267 Sum_probs=162.6
Q ss_pred eecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2032 ETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
-.+.||+++|..++|+| +.+.|+|||.|.+|+||.+..+...+ +..
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~---------------------------------~lt 121 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR---------------------------------DLT 121 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCccccc---------------------------------Ccc
Confidence 35679999999999999 67889999999999999997743221 123
Q ss_pred CceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2111 GPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
.++..|.||...|.-|+|+|. .+.++|++.|.+|.+||+.+|+.+-++.... ++.++|+.||..++..+.|..|++|+
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~d 201 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVID 201 (472)
T ss_pred cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEc
Confidence 678899999999999999997 5678899999999999999999988888322 78999999999999999999999999
Q ss_pred eCCceeeeecCCCCC-CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2189 LNGVLVARAKLPLSG-SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~-~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
.....+......|.+ .-..+.|-.+|..+-||- +. ..+.++
T Consensus 202 pr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf-sr-------------------------------------~seRq~ 243 (472)
T KOG0303|consen 202 PRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF-SR-------------------------------------MSERQI 243 (472)
T ss_pred CCCCcEeeecccccCCCcceeEEeccCceeeecc-cc-------------------------------------ccccce
Confidence 974444433355654 345566777888444442 11 136778
Q ss_pred EEEECCCCe---EEEEEecCCCCCeEEEEEecCCCEEEE-EeCCCcEEEEeCCC
Q 000085 2268 CFLDLHTLK---VFHVLKLGEGQDITALALNKDNTNLLV-STADKQLIVFTDPA 2317 (2342)
Q Consensus 2268 rIWDL~Tgk---~L~tL~lgHs~~ItsLafSPDG~~LaS-GSsDGsIrVWDi~s 2317 (2342)
-+||..+.+ .+..+. .+..|.---|.+|...++. |-.|+.|+-|.+.+
T Consensus 244 aLwdp~nl~eP~~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 244 ALWDPNNLEEPIALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred eccCcccccCcceeEEec--cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 888876643 233333 4556666667888887765 45799999998643
No 165
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=3.4e-12 Score=149.02 Aligned_cols=248 Identities=12% Similarity=0.111 Sum_probs=175.0
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccC
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGH 2037 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GH 2037 (2342)
..+..++-|+.+|+|+.+.......+ .|..+ +.+++|.++ ..+++|+.||.|+++|+.++... .+..|
T Consensus 26 ~~LLvssWDgslrlYdv~~~~l~~~~-------~~~~p---lL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-~igth 93 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPANSLKLKF-------KHGAP---LLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-QIGTH 93 (323)
T ss_pred CcEEEEeccCcEEEEeccchhhhhhe-------ecCCc---eeeeeccCC-ceEEEeccCceEEEEEecCCcce-eeccC
Confidence 34455568899999997762111111 12233 445788774 46778889999999999987654 45669
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC-ccccccCCceEEe
Q 000085 2038 CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-SRRRRIEGPIHVL 2116 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i~~~l~~L 2116 (2342)
..+|.|+.+++-...++|||+|++|++||.+........ .....|.++.. .|..++++..+. +..|++...-..+
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~--d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF--DQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEecccccccccc--ccCceEEEEec--cCCEEEEeecCceEEEEEcccccchh
Confidence 999999999998899999999999999999863322222 22334554443 467777755554 4445554332222
Q ss_pred ----cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----eEEEEEecC-----------CcEEEEEecCCcEEEE
Q 000085 2117 ----RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG----RLIRRLVGV-----------DAHAVSLSSEGVIMTW 2177 (2342)
Q Consensus 2117 ----~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG----klIrsL~gh-----------~vssLSfSpDG~IlVw 2177 (2342)
..-.-.+.||++-|++.=.+.+|-||.|.+=.+... .....|+.| .+..++|+|--..++.
T Consensus 170 q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaT 249 (323)
T KOG1036|consen 170 QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFAT 249 (323)
T ss_pred hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEe
Confidence 123456899999998888899999999998776655 223344444 2688999999889999
Q ss_pred EeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2178 NKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2178 dssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+..+|.|.+|++..+.-..........|.+++|+.||..|++|+
T Consensus 250 gGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 250 GGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred cCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 99999999999875433222222456799999999999999997
No 166
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.45 E-value=1.6e-13 Score=173.06 Aligned_cols=240 Identities=18% Similarity=0.203 Sum_probs=164.9
Q ss_pred cCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc
Q 000085 1994 SGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 1994 ~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
++...|.|+.|...|.+|++|+.|..++||..+++.++.++.||.+.|+.++.+.+..+++++|.|..|+||.+..+
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~--- 264 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG--- 264 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC---
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
.++..+.||++.|++++|+|-. +.+.||++++||.+-.-
T Consensus 265 -------------------------------------~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~ 303 (1113)
T KOG0644|consen 265 -------------------------------------APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEP 303 (1113)
T ss_pred -------------------------------------chHHHHhccccceeeeccCccc----cCCCCCceEeccccccc
Confidence 3556789999999999999844 78899999999987111
Q ss_pred EEEE---EecC---CcEEEEEecCCcEEEEEeCCCeEE-------------------------------------EEEeC
Q 000085 2154 LIRR---LVGV---DAHAVSLSSEGVIMTWNKLQHTLS-------------------------------------SFTLN 2190 (2342)
Q Consensus 2154 lIrs---L~gh---~vssLSfSpDG~IlVwdssdGsI~-------------------------------------I~dln 2190 (2342)
.+.. +... -+..+-+...|.-...+..++.-. +|++-
T Consensus 304 ~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 304 RIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY 383 (1113)
T ss_pred cccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecc
Confidence 0000 0000 012222223333333333333222 22221
Q ss_pred CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2191 GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2191 G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
...+.....+|...+..+.++|-...++ - .+..||++.||
T Consensus 384 ~g~l~H~l~ghsd~~yvLd~Hpfn~ri~-------------------------------------m---sag~dgst~iw 423 (1113)
T KOG0644|consen 384 TGQLLHNLMGHSDEVYVLDVHPFNPRIA-------------------------------------M---SAGYDGSTIIW 423 (1113)
T ss_pred cchhhhhhcccccceeeeeecCCCcHhh-------------------------------------h---hccCCCceEee
Confidence 1111111112333333333333221111 0 12259999999
Q ss_pred ECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2271 DLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2271 DL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|+..|.+++.+..+|. .+..-.||+||+.++....-|.++|......
T Consensus 424 di~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 424 DIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred ecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 9999988888776765 5667799999999999989999999985433
No 167
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.41 E-value=1.7e-11 Score=150.93 Aligned_cols=112 Identities=19% Similarity=0.229 Sum_probs=87.6
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
++..+++++.|.+++||..+.+-. ....-+.... .++-..+.|+.|+|...-|...+..|+++|||+.+++.+..+.
T Consensus 91 ~D~LLAT~S~D~~VKiW~lp~g~~-q~LSape~~~--g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~ 167 (1012)
T KOG1445|consen 91 ADELLATCSRDEPVKIWKLPRGHS-QKLSAPEIDV--GGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELS 167 (1012)
T ss_pred chhhhhcccCCCeeEEEecCCCcc-cccCCcceee--cCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeeccc
Confidence 567889999999999999773211 1111122111 2233457789999987744444568999999999999999999
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
+|.+.|.+..|+.||..|++.+.|..|+|+|.+..
T Consensus 168 ~h~d~vQSa~WseDG~llatscKdkqirifDPRa~ 202 (1012)
T KOG1445|consen 168 GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRAS 202 (1012)
T ss_pred CCchhhhccccccCCceEeeecCCcceEEeCCccC
Confidence 99999999999999999999999999999999874
No 168
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=3.4e-12 Score=154.08 Aligned_cols=203 Identities=22% Similarity=0.285 Sum_probs=151.0
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
.+++|+.+|..+++|+.||++|||++.+...+.....|...|.++.|+|||++|+|-+.| ..+||+++++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t-- 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT-- 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC--
Confidence 679999999999999999999999988888888888899999999999999999999999 99999999973322210
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC-----CEEEEEeCCCcEEEEECCCCeE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL-----GVVVSCSDSSDLLLHSIRRGRL 2154 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg-----~lLaSGS~DGtIrIWDLrTGkl 2154 (2342)
+ .+....+..|.|+.|+ ..++....-+.|+.||+
T Consensus 225 --------------------------------~----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~----- 263 (398)
T KOG0771|consen 225 --------------------------------P----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI----- 263 (398)
T ss_pred --------------------------------C----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEe-----
Confidence 0 1112233445555544 11222223344444442
Q ss_pred EEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccc
Q 000085 2155 IRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNI 2234 (2342)
Q Consensus 2155 IrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~L 2234 (2342)
-+|... ..++. .........|++++++.||++++.|+.
T Consensus 264 --------------------~~w~~~-~~l~~---------~~~~~~~~siSsl~VS~dGkf~AlGT~------------ 301 (398)
T KOG0771|consen 264 --------------------SLWSGS-NFLRL---------RKKIKRFKSISSLAVSDDGKFLALGTM------------ 301 (398)
T ss_pred --------------------eeeccc-cccch---------hhhhhccCcceeEEEcCCCcEEEEecc------------
Confidence 122211 11100 001113458999999999999999974
Q ss_pred cccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2235 QGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2235 w~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
||.|.|++..+.+.++..+..|...|+.+.|+||.+++++.+.|....|..
T Consensus 302 -----------------------------dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 302 -----------------------------DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred -----------------------------CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 567999999999999999989999999999999999999999999999988
Q ss_pred CCC
Q 000085 2315 DPA 2317 (2342)
Q Consensus 2315 i~s 2317 (2342)
+..
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 544
No 169
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.41 E-value=2.5e-12 Score=146.94 Aligned_cols=271 Identities=15% Similarity=0.161 Sum_probs=177.8
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc-cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
.+++++.|..+++ |.+|..-|.|.+|++.+.+.+..+. .|...|+.+.--|+ ..|.|-++|+++.+|++..+..+..
T Consensus 15 ~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i 92 (323)
T KOG0322|consen 15 SSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI 92 (323)
T ss_pred chheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE
Confidence 3456688877776 8889999999999999998888888 57889999998887 6789999999999999987433221
Q ss_pred cccCCCCCCccccc-----cCCCCCc----eeecCC--CccccccCCceEEe------cCCCCCeEEEEEecC-CC--EE
Q 000085 2076 GTIEPSSGMGTPGN-----SIGSSTP----ANASAD--KSRRRRIEGPIHVL------RGHHREILCCCVSSD-LG--VV 2135 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~-----SpDG~~L----as~s~D--~s~~~~i~~~l~~L------~GHs~~Vt~VafSPD-g~--lL 2135 (2342)
. .-.+..+.| .+.++.. +.-... .....+.....++. .+..+.+.|..+..+ +. ++
T Consensus 93 ~----Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ll 168 (323)
T KOG0322|consen 93 H----SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLL 168 (323)
T ss_pred e----eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEE
Confidence 1 111111111 1222111 111110 01111111111111 234566777775432 33 46
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEec----------CC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCc---e-eeeecC
Q 000085 2136 VSCSDSSDLLLHSIRRGRLIRRLVG----------VD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGV---L-VARAKL 2199 (2342)
Q Consensus 2136 aSGS~DGtIrIWDLrTGklIrsL~g----------h~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~---~-L~s~~~ 2199 (2342)
+.|.++|.|.+||+.++..+-.+.. |. +..+.+.+.-.-=+.+..+..+..|+++-. . +.....
T Consensus 169 laGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~ 248 (323)
T KOG0322|consen 169 LAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT 248 (323)
T ss_pred EEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE
Confidence 7888999999999999855444432 22 333333322222223333445566665421 1 111111
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEE
Q 000085 2200 PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFH 2279 (2342)
Q Consensus 2200 ~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~ 2279 (2342)
..+..|..+.+-||++.+++++. |+.|+||+.++++++.
T Consensus 249 lknpGv~gvrIRpD~KIlATAGW-----------------------------------------D~RiRVyswrtl~pLA 287 (323)
T KOG0322|consen 249 LKNPGVSGVRIRPDGKILATAGW-----------------------------------------DHRIRVYSWRTLNPLA 287 (323)
T ss_pred ecCCCccceEEccCCcEEeeccc-----------------------------------------CCcEEEEEeccCCchh
Confidence 13457889999999999999873 6789999999999999
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2280 VLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2280 tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
.+. -|.+.|++++|+||...+++++.|++|-+|+.
T Consensus 288 VLk-yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 288 VLK-YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhh-hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999 89999999999999999999999999999983
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.39 E-value=1e-11 Score=144.91 Aligned_cols=266 Identities=14% Similarity=0.079 Sum_probs=184.5
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcc--c--ccccceeccccCcceeEEEEE-------cCCCCEEEEEEcCCcEEEE
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADE--W--HFPRALAFASSGIRSSAVVSI-------THDKEIITGGHVDGSIKLL 2023 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~e--w--~~p~sls~hs~gI~Svt~Vaf-------SpDGklLASGS~DGsIrVW 2023 (2342)
|+|..+.+.+.|..+++|+.+....... . .++.....+-..-..+...+| .|+..++++.+.|.-|++|
T Consensus 59 PDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~w 138 (406)
T KOG2919|consen 59 PDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLW 138 (406)
T ss_pred CCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeee
Confidence 4567777888999999999775211111 0 011111111000011222233 4777899999999999999
Q ss_pred ecCCcccceeccc--CCCC---eEEEEecCCCCEEEEEeCCCceEEEecc-CCcccccc------ccCCCCCCccccccC
Q 000085 2024 TSDGAKTLETASG--HCAP---VTCLALSSDSNFLVTGSQDTTILLWRIH-RAFTSRTG------TIEPSSGMGTPGNSI 2091 (2342)
Q Consensus 2024 Dl~tgkll~tL~G--Ht~~---VtcLAfSPDG~~LaSGS~DGTVrVWDl~-tg~~i~t~------~~~~~~~V~svs~Sp 2091 (2342)
|.-+|+...++.+ |.+. -.|++|+|||.+|+.| ...+|+|+|+. .+...... ..+..+.+.+++++|
T Consensus 139 daftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP 217 (406)
T KOG2919|consen 139 DAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSP 217 (406)
T ss_pred eccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccC
Confidence 9999998877654 5544 3589999999999875 56799999994 33221111 122345677888998
Q ss_pred CCC-CceeecCCC---ccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCC-eEEEEEecCC---
Q 000085 2092 GSS-TPANASADK---SRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SSDLLLHSIRRG-RLIRRLVGVD--- 2162 (2342)
Q Consensus 2092 DG~-~Las~s~D~---s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DGtIrIWDLrTG-klIrsL~gh~--- 2162 (2342)
... .+++++... +..++-..++..+-||.+.|+.++|+++|+.+.+|+. |-.|.+||+|.. ..+..+..|.
T Consensus 218 ~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~T 297 (406)
T KOG2919|consen 218 MDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDT 297 (406)
T ss_pred CCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCc
Confidence 554 667666543 3446667899999999999999999999999999985 778999999864 4455554442
Q ss_pred c--EEEEEecCCcEEEEEeCCCeEEEEEeCCc-eeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2163 A--HAVSLSSEGVIMTWNKLQHTLSSFTLNGV-LVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2163 v--ssLSfSpDG~IlVwdssdGsI~I~dlnG~-~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
. ......|+|.+++.+..+|.|++|++.+- .-......|+..++.++++|-=..+++++
T Consensus 298 NQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 298 NQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred cceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 2 23456789999999999999999999751 11222334889999999999977777664
No 171
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.38 E-value=4.7e-12 Score=153.25 Aligned_cols=213 Identities=13% Similarity=0.128 Sum_probs=156.7
Q ss_pred ecCCcccceecccCCCCeEEEEecCCC--CEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecC
Q 000085 2024 TSDGAKTLETASGHCAPVTCLALSSDS--NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASA 2101 (2342)
Q Consensus 2024 Dl~tgkll~tL~GHt~~VtcLAfSPDG--~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~ 2101 (2342)
|+.+-.....+.-|.+.|+|++|+|.. +.+++|+.-|+|-+||+.+....
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---------------------------- 223 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---------------------------- 223 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc----------------------------
Confidence 333444556667789999999999964 57889999999999999742111
Q ss_pred CCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeE--EEEEecCC--cEEEEEecCCcEEE
Q 000085 2102 DKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRL--IRRLVGVD--AHAVSLSSEGVIMT 2176 (2342)
Q Consensus 2102 D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGkl--IrsL~gh~--vssLSfSpDG~IlV 2176 (2342)
..-+..+..|..+|.++.|+|. ...+++.|.||+|++-|+.++.. +.++.... ...+.++.+...++
T Consensus 224 --------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl 295 (498)
T KOG4328|consen 224 --------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL 295 (498)
T ss_pred --------cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE
Confidence 1224567889999999999985 57899999999999999987643 22222111 34556777777777
Q ss_pred EEeCCCeEEEEEeCCcee-eeecCCCCCCeEEEEEccCCCE-EEEEeCCCCCCCCCcccccccCCCCCCccccccccccc
Q 000085 2177 WNKLQHTLSSFTLNGVLV-ARAKLPLSGSIGCMEISLDGHS-ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQS 2254 (2342)
Q Consensus 2177 wdssdGsI~I~dlnG~~L-~s~~~~Hs~~ItsLafSPDGk~-LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s 2254 (2342)
++..-|.+.+|+.+...- .....-|...|++|+++|...+ ++|+|.
T Consensus 296 ~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~-------------------------------- 343 (498)
T KOG4328|consen 296 FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL-------------------------------- 343 (498)
T ss_pred EeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc--------------------------------
Confidence 776667888888752211 1111228889999999997655 555542
Q ss_pred cCCCCccCCCCeEEEEECCCCeE-----EEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2255 VDNNRFDFPSPSICFLDLHTLKV-----FHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2255 ~ss~~ias~DGsIrIWDL~Tgk~-----L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
|++.+|||++.... +.++ .|...|.+..|||++-.|++.+.|..|+|||.
T Consensus 344 ---------D~T~kIWD~R~l~~K~sp~lst~--~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 344 ---------DQTAKIWDLRQLRGKASPFLSTL--PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred ---------CcceeeeehhhhcCCCCcceecc--cccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 77899999986432 3333 59999999999999888999999999999996
No 172
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.38 E-value=1.3e-10 Score=143.31 Aligned_cols=262 Identities=11% Similarity=0.127 Sum_probs=169.4
Q ss_pred EEEEEcCCcEEEEecCC-cc--cceecccCCCCeEEEEecCCCCEEEEEe-CCCceEEEeccC-CccccccccCCCCCCc
Q 000085 2011 ITGGHVDGSIKLLTSDG-AK--TLETASGHCAPVTCLALSSDSNFLVTGS-QDTTILLWRIHR-AFTSRTGTIEPSSGMG 2085 (2342)
Q Consensus 2011 LASGS~DGsIrVWDl~t-gk--ll~tL~GHt~~VtcLAfSPDG~~LaSGS-~DGTVrVWDl~t-g~~i~t~~~~~~~~V~ 2085 (2342)
.++...|+.|++|++.+ ++ .++++. +.+....++++|++++|+.++ .++.|.+|++.. +...............
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 34446799999999964 43 445554 345678899999999987664 588999999973 2221111112233456
Q ss_pred cccccCCCCCceeecCC--CccccccC------CceEEecCCCCCeEEEEEecCCCEEEE-EeCCCcEEEEECCCCeEEE
Q 000085 2086 TPGNSIGSSTPANASAD--KSRRRRIE------GPIHVLRGHHREILCCCVSSDLGVVVS-CSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2086 svs~SpDG~~Las~s~D--~s~~~~i~------~~l~~L~GHs~~Vt~VafSPDg~lLaS-GS~DGtIrIWDLrTGklIr 2156 (2342)
.+.++|+++.+.+.... .+..++.. ..+..+.+ .....+++++|+++++++ ...++.|.+||+.+...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 78899999988766532 22334332 12222222 234677889999998854 4567999999997633221
Q ss_pred -------E-EecCCcEEEEEecCCcEEEEEe-CCCeEEEEEeCC--cee---eeec-CC----CCCCeEEEEEccCCCEE
Q 000085 2157 -------R-LVGVDAHAVSLSSEGVIMTWNK-LQHTLSSFTLNG--VLV---ARAK-LP----LSGSIGCMEISLDGHSA 2217 (2342)
Q Consensus 2157 -------s-L~gh~vssLSfSpDG~IlVwds-sdGsI~I~dlnG--~~L---~s~~-~~----Hs~~ItsLafSPDGk~L 2217 (2342)
. ..+.....++|+|||++++... .++.+.+|+++. ..+ .... .+ +......+.++|+|+++
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 1 1234467899999999775554 478999999862 111 1111 11 11233468899999999
Q ss_pred EEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC----eEEEEEecCCCCCeEEEE
Q 000085 2218 LIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL----KVFHVLKLGEGQDITALA 2293 (2342)
Q Consensus 2218 aSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg----k~L~tL~lgHs~~ItsLa 2293 (2342)
+++.. .++.|.+|++... +.+..+.. ......+.
T Consensus 243 yv~~~----------------------------------------~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~ 280 (330)
T PRK11028 243 YACDR----------------------------------------TASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFN 280 (330)
T ss_pred EEecC----------------------------------------CCCeEEEEEEeCCCCeEEEeEEEec--cccCCceE
Confidence 98731 1467899988542 23333331 23456899
Q ss_pred EecCCCEEEEEeC-CCcEEEEeCC
Q 000085 2294 LNKDNTNLLVSTA-DKQLIVFTDP 2316 (2342)
Q Consensus 2294 fSPDG~~LaSGSs-DGsIrVWDi~ 2316 (2342)
++|||++|+++.. +++|.+|+.+
T Consensus 281 ~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 281 IDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999999998775 8999999854
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.37 E-value=4.1e-11 Score=142.88 Aligned_cols=189 Identities=14% Similarity=0.172 Sum_probs=143.3
Q ss_pred eeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCc-------ccceecccCCCCeEEEEecCC-CCEEEEEeCC
Q 000085 1989 LAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGA-------KTLETASGHCAPVTCLALSSD-SNFLVTGSQD 2059 (2342)
Q Consensus 1989 ls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tg-------kll~tL~GHt~~VtcLAfSPD-G~~LaSGS~D 2059 (2342)
+.+|.+.+. -++|+|.+. .||+|+.|.+|.||++..+ +.+..|.||...|--++|+|. .+.|+|++.|
T Consensus 77 v~GHt~~vL---Di~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 77 VCGHTAPVL---DIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred ccCcccccc---ccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 345555544 488998665 8999999999999998654 345678999999999999996 5789999999
Q ss_pred CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2060 TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
.+|.+|++.++.. +..+. |.+.|++++|+.||.+++|.+
T Consensus 154 n~v~iWnv~tgea----------------------------------------li~l~-hpd~i~S~sfn~dGs~l~Ttc 192 (472)
T KOG0303|consen 154 NTVSIWNVGTGEA----------------------------------------LITLD-HPDMVYSMSFNRDGSLLCTTC 192 (472)
T ss_pred ceEEEEeccCCce----------------------------------------eeecC-CCCeEEEEEeccCCceeeeec
Confidence 9999999998632 22233 999999999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEEecCC---cEEEEEecCCcEEEEEe---CCCeEEEEEeCC--ceeeeecCCCCCCeEEEEEc
Q 000085 2140 DSSDLLLHSIRRGRLIRRLVGVD---AHAVSLSSEGVIMTWNK---LQHTLSSFTLNG--VLVARAKLPLSGSIGCMEIS 2211 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGklIrsL~gh~---vssLSfSpDG~IlVwds---sdGsI~I~dlnG--~~L~s~~~~Hs~~ItsLafS 2211 (2342)
.|..|+|||.++|+.+..-.+|+ ..-+.|-.+|.++..+. .+.++.+|+.+. .++....+.....|.---|.
T Consensus 193 kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD 272 (472)
T KOG0303|consen 193 KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYD 272 (472)
T ss_pred ccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeec
Confidence 99999999999999998876664 45667777888665553 345677887642 22222222244556556677
Q ss_pred cCCCEEEEEe
Q 000085 2212 LDGHSALIGV 2221 (2342)
Q Consensus 2212 PDGk~LaSGS 2221 (2342)
+|...+..++
T Consensus 273 ~dt~ivYl~G 282 (472)
T KOG0303|consen 273 PDTSIVYLCG 282 (472)
T ss_pred CCCCEEEEEe
Confidence 7777776654
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.35 E-value=1.9e-11 Score=146.57 Aligned_cols=199 Identities=17% Similarity=0.215 Sum_probs=139.7
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCCcc---------cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEecc
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDGAK---------TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~tgk---------ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
+..+.|.++.. .+++|+.|..|++|-+..+. .+..+.+|...|+++.|+|+|..|+||+.+|.|.+|...
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG 95 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence 44577887776 99999999999999876432 245688999999999999999999999999999999876
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWD 2148 (2342)
.-.. . ..+. - .......| .....+.+|...|..++|+|++.++++++.|.++++||
T Consensus 96 ~~~~-~---------------~~d~---e--~~~~ke~w---~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~D 151 (434)
T KOG1009|consen 96 DVRI-F---------------DADT---E--ADLNKEKW---VVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWD 151 (434)
T ss_pred CcCC-c---------------cccc---h--hhhCccce---EEEEEecccccchhhhhccCCCceeeeeeccceEEEEE
Confidence 5110 0 0000 0 00000011 23467788999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceee-------------------eecCCCCC----
Q 000085 2149 IRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA-------------------RAKLPLSG---- 2203 (2342)
Q Consensus 2149 LrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~-------------------s~~~~Hs~---- 2203 (2342)
+..|+.+..+..|. +..++|.|-+++++.-..+...+.+.++-..+. ...+-|+.
T Consensus 152 v~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlks 231 (434)
T KOG1009|consen 152 VHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKS 231 (434)
T ss_pred eccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhh
Confidence 99999999998876 567788777665554444433333332211000 00011322
Q ss_pred CeEEEEEccCCCEEEEEe
Q 000085 2204 SIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2204 ~ItsLafSPDGk~LaSGS 2221 (2342)
-...++|+|||.++++..
T Consensus 232 FFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 232 FFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred hhhhcccCCCCcEEEccc
Confidence 345678899999998774
No 175
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=5.2e-11 Score=138.79 Aligned_cols=230 Identities=11% Similarity=0.099 Sum_probs=163.9
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC--CCCEEEEEEcCCcEEEEecCC-----
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH--DKEIITGGHVDGSIKLLTSDG----- 2027 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp--DGklLASGS~DGsIrVWDl~t----- 2027 (2342)
..|++++++++|.+++||+... ....|........|.+.+- -|.|.+ -|+++|+++.|+++.||.-..
T Consensus 23 ~~GRRmAtCSsDq~vkI~d~~~--~s~~W~~Ts~Wrah~~Si~---rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~ 97 (361)
T KOG2445|consen 23 FYGRRMATCSSDQTVKIWDSTS--DSGTWSCTSSWRAHDGSIW---RVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA 97 (361)
T ss_pred ccCceeeeccCCCcEEEEeccC--CCCceEEeeeEEecCCcEE---EEEecCccccceEEEEecCCceeeeeeccccccc
Confidence 3689999999999999999533 3445665555555555543 366654 488999999999999997521
Q ss_pred -c---ccceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCcc------cccc------ccCCCCCCccccc
Q 000085 2028 -A---KTLETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFT------SRTG------TIEPSSGMGTPGN 2089 (2342)
Q Consensus 2028 -g---kll~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~------i~t~------~~~~~~~V~svs~ 2089 (2342)
+ ....++......|+.+.|.|. |-.|++++.||++|||+.-.... .+++ ...+.....++.|
T Consensus 98 ~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW 177 (361)
T KOG2445|consen 98 HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW 177 (361)
T ss_pred ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence 1 123456667789999999995 78899999999999998765321 1111 1123345566777
Q ss_pred cCC---CCCceeecCC------Ccccccc------CCceEEecCCCCCeEEEEEecC----CCEEEEEeCCCcEEEEECC
Q 000085 2090 SIG---SSTPANASAD------KSRRRRI------EGPIHVLRGHHREILCCCVSSD----LGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2090 SpD---G~~Las~s~D------~s~~~~i------~~~l~~L~GHs~~Vt~VafSPD----g~lLaSGS~DGtIrIWDLr 2150 (2342)
++. ...++++..+ ...++.. ...+..+.+|+++|+.++|.|+ ..+|++++.|| |+||.++
T Consensus 178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVK 256 (361)
T ss_pred ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEe
Confidence 753 3456666655 2222222 1235667899999999999997 35799999999 9999987
Q ss_pred CC--------------------eEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2151 RG--------------------RLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2151 TG--------------------klIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
.. +.+..+..|. +..++|.-.|.++...+.||++++|..+
T Consensus 257 ~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 257 VARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 31 1233444554 7889999999999999999999999865
No 176
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=4.3e-11 Score=145.09 Aligned_cols=198 Identities=10% Similarity=0.150 Sum_probs=159.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEec
Q 000085 2038 CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLR 2117 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~ 2117 (2342)
.+.|+|+.|+|....|++|+.|++++||.+..... ..++.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--------------------------------------~~lqS~~ 254 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--------------------------------------PKLQSIH 254 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC--------------------------------------hhheeee
Confidence 46799999999999999999999999999876321 2234444
Q ss_pred CCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCeEEE--EEecCC---cEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2118 GHHREILCCCVSSDLG-VVVSCSDSSDLLLHSIRRGRLIR--RLVGVD---AHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2118 GHs~~Vt~VafSPDg~-lLaSGS~DGtIrIWDLrTGklIr--sL~gh~---vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
-...+|.+++|.|+|. .+++++.-..++.||+.+++..+ .+.+++ .....+|+++.+++.....|.|++.....
T Consensus 255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT 334 (514)
T KOG2055|consen 255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT 334 (514)
T ss_pred eccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh
Confidence 5567899999999999 89999999999999999887543 333333 56788999999999999999998887654
Q ss_pred ce-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2192 VL-VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2192 ~~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
.. +.... ..+.|..++|+.||+.|++.+ .+|.|++|
T Consensus 335 ~eli~s~K--ieG~v~~~~fsSdsk~l~~~~-----------------------------------------~~GeV~v~ 371 (514)
T KOG2055|consen 335 KELITSFK--IEGVVSDFTFSSDSKELLASG-----------------------------------------GTGEVYVW 371 (514)
T ss_pred hhhhheee--eccEEeeEEEecCCcEEEEEc-----------------------------------------CCceEEEE
Confidence 33 32222 568999999999999888664 16789999
Q ss_pred ECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2271 DLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2271 DL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
|+++..+++.+.....-.-++++.|++|.+|++|+..|.|.|||..
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 9999999999873323344778888999999999999999999944
No 177
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.34 E-value=4.4e-11 Score=139.79 Aligned_cols=263 Identities=13% Similarity=0.052 Sum_probs=193.3
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCc-------cc-----ceecc-cCCCCeEEEEec-------CCCCEEEEEeCCCc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGA-------KT-----LETAS-GHCAPVTCLALS-------SDSNFLVTGSQDTT 2061 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tg-------kl-----l~tL~-GHt~~VtcLAfS-------PDG~~LaSGS~DGT 2061 (2342)
+.|+|||..|.+-+.|+.+++|++... .. ..++. ...+.|...+|- |+.+++++.++|.-
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 789999999999999999999987421 00 11111 123457776774 67789999999999
Q ss_pred eEEEeccCCcccccc----ccCCCCCCccccccCCCCCceeecCCCccccccCCc-----eEE-----ecCCCCCeEEEE
Q 000085 2062 ILLWRIHRAFTSRTG----TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP-----IHV-----LRGHHREILCCC 2127 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~----~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~-----l~~-----L~GHs~~Vt~Va 2127 (2342)
|.+||..+++....+ ....-.+..++.|+|||..+.++....++.+++.++ +.. -.+..+.|.|++
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a 214 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFA 214 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeee
Confidence 999999998765544 122334567899999999999988877766655222 111 123467899999
Q ss_pred EecC-CCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeC-CCeEEEEEeCCc--eeeeecCCC
Q 000085 2128 VSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKL-QHTLSSFTLNGV--LVARAKLPL 2201 (2342)
Q Consensus 2128 fSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdss-dGsI~I~dlnG~--~L~s~~~~H 2201 (2342)
|+|- ...++.|+...++-|+.-..+..+..+-+|+ ++.++|.+||+-++.+.+ +..|..|++... ++-. ...|
T Consensus 215 ~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~-L~rh 293 (406)
T KOG2919|consen 215 FSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA-LERH 293 (406)
T ss_pred ccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh-hhhh
Confidence 9995 4588999999999999888889999988875 899999999997777654 467889998631 1111 1113
Q ss_pred CC-CeE--EEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC-CeE
Q 000085 2202 SG-SIG--CMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT-LKV 2277 (2342)
Q Consensus 2202 s~-~It--sLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T-gk~ 2277 (2342)
.+ .-. -....|+|++|++|+. ||.|++||+++ +..
T Consensus 294 v~~TNQRI~FDld~~~~~LasG~t-----------------------------------------dG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 294 VGDTNQRILFDLDPKGEILASGDT-----------------------------------------DGSVRVWDLKDLGNE 332 (406)
T ss_pred ccCccceEEEecCCCCceeeccCC-----------------------------------------CccEEEEecCCCCCc
Confidence 32 222 3455688999998852 67799999998 776
Q ss_pred EEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2278 FHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
+..+. .|...|+.++++|--..+++++..
T Consensus 333 ~sv~~-~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 VSVTG-NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccc-cccccccceecCcccceeeeccCc
Confidence 77777 788999999999998888877654
No 178
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.33 E-value=4.2e-11 Score=144.96 Aligned_cols=218 Identities=16% Similarity=0.174 Sum_probs=152.4
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceec----------------cccCcceeEEEEEcCCCC-EEEEEEcCCc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAF----------------ASSGIRSSAVVSITHDKE-IITGGHVDGS 2019 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~----------------hs~gI~Svt~VafSpDGk-lLASGS~DGs 2019 (2342)
|.++|-|+-+..|.||+..--+. .+|...-+ ..++...|..++|...-+ +||+|+.|.+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~----v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDA----VLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT 267 (463)
T ss_pred cceEEEeccCceeEEeccccccc----cccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCce
Confidence 55678888899999998643111 11211111 112222333455655544 9999999999
Q ss_pred EEEEecCCcccceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCcee
Q 000085 2020 IKLLTSDGAKTLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPAN 2098 (2342)
Q Consensus 2020 IrVWDl~tgkll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las 2098 (2342)
|++||+.+|++..++..|.+.|.++.|+|. ..+|++||.|++|.+.|.+...+.
T Consensus 268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s------------------------- 322 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS------------------------- 322 (463)
T ss_pred EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc-------------------------
Confidence 999999999999999999999999999985 689999999999999999852110
Q ss_pred ecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCC-CeEEEEEecCC--cEEEEEecCC-c
Q 000085 2099 ASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRR-GRLIRRLVGVD--AHAVSLSSEG-V 2173 (2342)
Q Consensus 2099 ~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrT-GklIrsL~gh~--vssLSfSpDG-~ 2173 (2342)
...| .-.+.|-.++|.|. ...++++..||+|+-+|+|. |+++.++..|. +..++++..- .
T Consensus 323 -----~~~w----------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~ 387 (463)
T KOG0270|consen 323 -----GKEW----------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPG 387 (463)
T ss_pred -----CceE----------EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCc
Confidence 0011 12466788888875 45677888999999999997 48999999885 6777777654 3
Q ss_pred EEEEEeCCCeEEEEEeCCceeeeecCC--CCCCeEEEEEccCCCEEE
Q 000085 2174 IMTWNKLQHTLSSFTLNGVLVARAKLP--LSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2174 IlVwdssdGsI~I~dlnG~~L~s~~~~--Hs~~ItsLafSPDGk~La 2218 (2342)
+++.++.++.+.+|++.+......... .-+...|.++.|+-.+++
T Consensus 388 ~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~l 434 (463)
T KOG0270|consen 388 LLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTL 434 (463)
T ss_pred ceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEE
Confidence 566678889999999865322111100 123466777777655544
No 179
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=6.6e-11 Score=139.81 Aligned_cols=300 Identities=13% Similarity=0.093 Sum_probs=196.2
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC------cccceeccc-CCCCeEEEEecCCCCEEEEEeCCCceEEEec
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG------AKTLETASG-HCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t------gkll~tL~G-Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl 2067 (2342)
+..|++++.|+.++++|++|+.|..++||+++. .++++.... |...|.|++|.....+|++|..+++|...|+
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence 445677799999999999999999999999763 345554433 5589999999998999999999999999999
Q ss_pred cCCcccccc-ccCCCCCCccccccCCCCCceeecCCCc-cccccCC---c--eEEecCCCCCeEEEEEecC-CCEEEEEe
Q 000085 2068 HRAFTSRTG-TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG---P--IHVLRGHHREILCCCVSSD-LGVVVSCS 2139 (2342)
Q Consensus 2068 ~tg~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~---~--l~~L~GHs~~Vt~VafSPD-g~lLaSGS 2139 (2342)
.+.+.+... .....+.|+.+..+|..+.+++...++. ..|+... + ...+.........+-|+|. ..+|++.+
T Consensus 135 Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~ 214 (609)
T KOG4227|consen 135 ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNS 214 (609)
T ss_pred ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecc
Confidence 987655544 3344568899999998777777766654 3455421 1 2223334556778889986 56778899
Q ss_pred CCCcEEEEECCCCeE-EEE---EecC-----CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCC-------CC
Q 000085 2140 DSSDLLLHSIRRGRL-IRR---LVGV-----DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPL-------SG 2203 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGkl-Irs---L~gh-----~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~H-------s~ 2203 (2342)
.-|.+-+||++..+. +.. +.+- +-..+-|+++|+.++.-.+...-..|++..+.+......| ..
T Consensus 215 ~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~ 294 (609)
T KOG4227|consen 215 ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIK 294 (609)
T ss_pred ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeee
Confidence 999999999975431 111 1111 1135678999987765444444455665543322222222 24
Q ss_pred CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCC-CCccccc-cccccccCCCCccCCCCeEEEEECCCCeEEEEE
Q 000085 2204 SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ-SGTEDFD-LASDQSVDNNRFDFPSPSICFLDLHTLKVFHVL 2281 (2342)
Q Consensus 2204 ~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~-~~~iaFs-pd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL 2281 (2342)
.+.+++|..|.. +++|+.+-. ..+|.+.... .+.+... .+.... -..|.| .+.+.++
T Consensus 295 T~KS~~F~~D~~-v~tGSD~~~------i~~WklP~~~ds~G~~~IG~~~~~~---------~~~~~i-----~~~~~VL 353 (609)
T KOG4227|consen 295 TIKSMTFIDDYT-VATGSDHWG------IHIWKLPRANDSYGFTQIGHDEEEM---------PSEIFI-----EKELTVL 353 (609)
T ss_pred eeeeeeeeccee-eeccCcccc------eEEEecCCCccccCccccCcchhhC---------chhhee-----cceeEEE
Confidence 567778876554 777764332 3345543321 1110000 000000 001111 2235566
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2282 KLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2282 ~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
. +|..-++.|.|+|...+|++.|..+.+++|..-
T Consensus 354 r-GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 354 R-GHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred e-cccccccceeecCCcceEeccchhhheeccccc
Confidence 7 999999999999999999999999999999843
No 180
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.32 E-value=2.5e-11 Score=148.09 Aligned_cols=199 Identities=18% Similarity=0.213 Sum_probs=156.4
Q ss_pred EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccc
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGN 2089 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~ 2089 (2342)
.++.++.||.+.+.+ ..++....+..|.+.|.|-.|+|||.-|+|++.||.|++|.-... .+........++.+++|
T Consensus 77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESIRCARW 153 (737)
T ss_pred eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCceeEEEEE
Confidence 677778899998887 456777888999999999999999999999999999999986542 22233455678999999
Q ss_pred cCCCCCceeecCCCcccc--ccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec--CCcEE
Q 000085 2090 SIGSSTPANASADKSRRR--RIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG--VDAHA 2165 (2342)
Q Consensus 2090 SpDG~~Las~s~D~s~~~--~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g--h~vss 2165 (2342)
.|++..+..+..+....- .....+...+.|++-|.|+.|++..++++||+.|-..+|||- .|+.+..-.. +.++.
T Consensus 154 ~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITS 232 (737)
T KOG1524|consen 154 APNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITS 232 (737)
T ss_pred CCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceee
Confidence 999998888777755432 223445667899999999999999999999999999999996 4555544333 45899
Q ss_pred EEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2166 VSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2166 LSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
++|.||..+.+|.... ++ ...+..+.|..++||+||..+++|+..|.
T Consensus 233 va~npd~~~~v~S~nt--~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 233 VAFNPEKDYLLWSYNT--AR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred eeeccccceeeeeeee--ee-----------ecCCCccceEEEEEcCCCceeeccccCce
Confidence 9999997777776432 22 11235689999999999999998875553
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.31 E-value=4.7e-11 Score=147.71 Aligned_cols=254 Identities=16% Similarity=0.161 Sum_probs=185.4
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
|+|..++-+.++ .+-+|+...|.. -+++..| -..|.|++|+.||+.+|+|+.|..|.||+..- ...+
T Consensus 22 PDGsqL~lAAg~-rlliyD~ndG~l------lqtLKgH---KDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~L 88 (1081)
T KOG1538|consen 22 PDGTQLILAAGS-RLLVYDTSDGTL------LQPLKGH---KDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGIL 88 (1081)
T ss_pred CCCceEEEecCC-EEEEEeCCCccc------ccccccc---cceEEEEEEccCCceeccCCCceeEEEecccc---ccee
Confidence 556666555444 567888665322 2234444 45577899999999999999999999998642 2222
Q ss_pred -ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc--cCC
Q 000085 2035 -SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR--IEG 2111 (2342)
Q Consensus 2035 -~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~--i~~ 2111 (2342)
..|++.|.|+.|+|-.+.|+||+-. ..-+|......... ......+.+.+|..||++++.+..+++...+ .++
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K---~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE 164 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK---HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE 164 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh---hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence 3599999999999999999999864 35578766532111 1234457788899999999999999875433 233
Q ss_pred ceEEe---cCCCCCeEEEEEecCC-----CEEEEEeCCCcEEEEECCCCeEEEEEe--cCCcEEEEEecCCcEEEEEeCC
Q 000085 2112 PIHVL---RGHHREILCCCVSSDL-----GVVVSCSDSSDLLLHSIRRGRLIRRLV--GVDAHAVSLSSEGVIMTWNKLQ 2181 (2342)
Q Consensus 2112 ~l~~L---~GHs~~Vt~VafSPDg-----~lLaSGS~DGtIrIWDLrTGklIrsL~--gh~vssLSfSpDG~IlVwdssd 2181 (2342)
+...+ -|...+|++++|+|.. ..++......++.+|.+ +|+.+..-+ +-+..+++..++|.+++.+..+
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCC
Confidence 32222 3467899999999863 46777777788888776 455544222 1345788899999999999999
Q ss_pred CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2182 HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2182 GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
+.+++|.-.|-.+.+.-. .+.+|+.++..|++++++.|+.||+..
T Consensus 244 k~L~~fTR~GvrLGTvg~-~D~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 244 KQLSLFTRDGVRLGTVGE-QDSWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred CceEEEeecCeEEeeccc-cceeEEEEEEccCCceEEEEEccCeee
Confidence 999999999877665432 778999999999999999999988754
No 182
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=2.8e-10 Score=147.13 Aligned_cols=274 Identities=15% Similarity=0.149 Sum_probs=190.7
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCC--c--ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDG--A--KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~t--g--kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
.+|+++||.++++|+|..||.|.||.--. + ...+.+.-|.+.|++++|++||.+|+||++.|.+.+|.+.++. +
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--k 285 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--K 285 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--c
Confidence 57899999999999999999999996432 2 2345677899999999999999999999999999999999976 5
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccc-ccc-----CCceEEe--------cCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRR-RRI-----EGPIHVL--------RGHHREILCCCVSSDLGVVVSCSD 2140 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i-----~~~l~~L--------~GHs~~Vt~VafSPDg~lLaSGS~ 2140 (2342)
++.......+..+.++||+...+....|.... ... ...+..+ .+..+-.+.++++|..+.++-.+.
T Consensus 286 qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~ 365 (792)
T KOG1963|consen 286 QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH 365 (792)
T ss_pred ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence 66677788899999999999988887775422 111 0011111 123455678899997778888999
Q ss_pred CCcEEEEECCCCeEEEEEecC-------------CcEEEEEecCCcEEEEEe--------CC--CeEEEEEeCCce----
Q 000085 2141 SSDLLLHSIRRGRLIRRLVGV-------------DAHAVSLSSEGVIMTWNK--------LQ--HTLSSFTLNGVL---- 2193 (2342)
Q Consensus 2141 DGtIrIWDLrTGklIrsL~gh-------------~vssLSfSpDG~IlVwds--------sd--GsI~I~dlnG~~---- 2193 (2342)
.|.|.+||+.+...+..+.-. .++.++.+..|.+++... .+ ..++.|..++..
T Consensus 366 ~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~ 445 (792)
T KOG1963|consen 366 PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFI 445 (792)
T ss_pred CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeE
Confidence 999999999988777665421 134555566676665431 11 246667665321
Q ss_pred -eeeecCCCCCCeEEEEEccCCC--EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2194 -VARAKLPLSGSIGCMEISLDGH--SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2194 -L~s~~~~Hs~~ItsLafSPDGk--~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
......+|...+...++.+..+ ..++++. ||.++||
T Consensus 446 L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~-----------------------------------------dg~~KiW 484 (792)
T KOG1963|consen 446 LNTKINNPHGNAFVATIFLNPTRSVRCVTASV-----------------------------------------DGDFKIW 484 (792)
T ss_pred EEEEEecCCCceeEEEEEecCcccceeEEecc-----------------------------------------CCeEEEE
Confidence 2233345766666555544221 3444432 5667777
Q ss_pred ECCC----------CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2271 DLHT----------LKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2271 DL~T----------gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
-+.. ..+.. +..-|..++++++|+.||. +++.+.|++|.+||..+
T Consensus 485 ~~~~~~n~~k~~s~W~c~~-i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 485 VFTDDSNIYKKSSNWTCKA-IGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEecccccCcCccceEEee-eeccccCcccchhhcCCCc-EEEEecCCEEEEecCCC
Confidence 6621 11222 1213788999999999995 77788899999999766
No 183
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.30 E-value=7.3e-11 Score=147.18 Aligned_cols=232 Identities=18% Similarity=0.253 Sum_probs=159.2
Q ss_pred CCEEEEEEcCCcEEEEecCCccc------ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKT------LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkl------l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~ 2081 (2342)
..+|+.+..||.|.++|...... +.....|.+.|..+.|.|....||+++.|.|+++||+.+.....
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G------- 136 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG------- 136 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec-------
Confidence 34899999999999999865432 34556799999999999977889999999999999999853221
Q ss_pred CCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeE------
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRL------ 2154 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGkl------ 2154 (2342)
...+.||.+.|.++||.+. ...+++|+.||.|.|||++-...
T Consensus 137 -------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~ 185 (720)
T KOG0321|consen 137 -------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF 185 (720)
T ss_pred -------------------------------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH
Confidence 1246899999999999986 56789999999999999974320
Q ss_pred --------------E----EEE---ecCC--cEE---EEEecCCcEEEEE-eCCCeEEEEEeCCc-------eeeeecCC
Q 000085 2155 --------------I----RRL---VGVD--AHA---VSLSSEGVIMTWN-KLQHTLSSFTLNGV-------LVARAKLP 2200 (2342)
Q Consensus 2155 --------------I----rsL---~gh~--vss---LSfSpDG~IlVwd-ssdGsI~I~dlnG~-------~L~s~~~~ 2200 (2342)
. +.+ ..+. +.. +.+..|...++.. ..|+.|++||+... ......++
T Consensus 186 ~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~ 265 (720)
T KOG0321|consen 186 DNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYP 265 (720)
T ss_pred hhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCcc
Confidence 0 000 0011 111 2334455555544 44889999998531 11111111
Q ss_pred -C---CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe
Q 000085 2201 -L---SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK 2276 (2342)
Q Consensus 2201 -H---s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk 2276 (2342)
| .-.+.++.....|.+|++.+ . |++|++||+.+..
T Consensus 266 t~skrs~G~~nL~lDssGt~L~AsC---t--------------------------------------D~sIy~ynm~s~s 304 (720)
T KOG0321|consen 266 THSKRSVGQVNLILDSSGTYLFASC---T--------------------------------------DNSIYFYNMRSLS 304 (720)
T ss_pred CcccceeeeEEEEecCCCCeEEEEe---c--------------------------------------CCcEEEEeccccC
Confidence 3 34677888888888888654 2 7789999997643
Q ss_pred --EEEEEecCCCCC--eEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2277 --VFHVLKLGEGQD--ITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2277 --~L~tL~lgHs~~--ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
++..+. ++-.. -..-..+||+.+|++|+.|...++|.+....
T Consensus 305 ~sP~~~~s-g~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 305 ISPVAEFS-GKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred cCchhhcc-CcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 222222 22110 1122468999999999999999999976654
No 184
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.30 E-value=1.4e-11 Score=146.34 Aligned_cols=147 Identities=12% Similarity=0.255 Sum_probs=116.2
Q ss_pred EEecCCCceEEEecCCCCCCCccccccc-ceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccc--eecc
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPR-ALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTL--ETAS 2035 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~-sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll--~tL~ 2035 (2342)
+++|..-+-|++|...+ ..|.+.. .+.. +..+|.-++|||..+ +|++|+.||+|+|||+..+... -..+
T Consensus 227 LlsGDc~~~I~lw~~~~----g~W~vd~~Pf~g---H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPST----GSWKVDQRPFTG---HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK 299 (440)
T ss_pred cccCccccceEeeeecc----CceeecCccccc---cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee
Confidence 34444456788888655 3566544 2223 445666699999876 9999999999999999987322 2237
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEE
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~ 2115 (2342)
.|...|+.|.|+.+..+|++|+.||+++|||+++-+ ...++..
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~-------------------------------------~~~pVA~ 342 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK-------------------------------------SGQPVAT 342 (440)
T ss_pred ccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc-------------------------------------CCCccee
Confidence 899999999999988899999999999999998732 1257788
Q ss_pred ecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECC
Q 000085 2116 LRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLr 2150 (2342)
++-|..+|+||.|+|. ...|++++.|..|.+||+.
T Consensus 343 fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 343 FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred EEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 9999999999999985 5678889999999999984
No 185
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=7.8e-12 Score=164.37 Aligned_cols=230 Identities=14% Similarity=0.199 Sum_probs=171.5
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecc--
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETAS-- 2035 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~-- 2035 (2342)
.|++|..|+.|-+|+............-.....|.+.+.. +.|++... +||+|+.||.|.|||+..-+.-.+..
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~g---LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~ 158 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLG---LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQ 158 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceee---eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCC
Confidence 5788999999999996542122222222334455555544 99999877 99999999999999998755444442
Q ss_pred cCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCcccccc-ccCCCCCCccccccCCCC-CceeecCCC----ccccc
Q 000085 2036 GHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTG-TIEPSSGMGTPGNSIGSS-TPANASADK----SRRRR 2108 (2342)
Q Consensus 2036 GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~-~~~~~~~V~svs~SpDG~-~Las~s~D~----s~~~~ 2108 (2342)
.-.+.|.|++|+.. .+.|++++.+|++.|||++..+.+..+ .......+..+.|+|++. .+++.+.|. +..|+
T Consensus 159 ~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD 238 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD 238 (1049)
T ss_pred CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence 24578999999875 467899999999999999987554444 222224567889999875 344444442 23465
Q ss_pred c---CCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCc-EEEEEeCC
Q 000085 2109 I---EGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGV-IMTWNKLQ 2181 (2342)
Q Consensus 2109 i---~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~-IlVwdssd 2181 (2342)
. ..+++++.+|...|.++.|++.+ .+++|++.|+.|.+|+.++|+.+..+...+ ...+.|+|..- ++....-+
T Consensus 239 lR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 239 LRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred ccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheec
Confidence 4 46788999999999999999866 889999999999999999999999987644 56788888765 55566778
Q ss_pred CeEEEEEeCC
Q 000085 2182 HTLSSFTLNG 2191 (2342)
Q Consensus 2182 GsI~I~dlnG 2191 (2342)
|.|.+|.+.+
T Consensus 319 gkI~I~sl~~ 328 (1049)
T KOG0307|consen 319 GKISIYSLQG 328 (1049)
T ss_pred cceeeeeeec
Confidence 8899998865
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.29 E-value=1.6e-12 Score=164.24 Aligned_cols=240 Identities=18% Similarity=0.225 Sum_probs=174.1
Q ss_pred cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcccc
Q 000085 2028 AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRR 2107 (2342)
Q Consensus 2028 gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~ 2107 (2342)
.+.+..+.||...|.|+.|...|.+++||+.|..|+||..+++.
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~------------------------------------ 223 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR------------------------------------ 223 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh------------------------------------
Confidence 45567788999999999999999999999999999999988753
Q ss_pred ccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEE
Q 000085 2108 RIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2108 ~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
++..+.||.+.|+.++++.+..+++++|.|..|++|-+.+|..+..+.+|+ ++.++|+|-. ....+|+++
T Consensus 224 ----~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~ 295 (1113)
T KOG0644|consen 224 ----CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCR 295 (1113)
T ss_pred ----hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceE
Confidence 334568999999999999999999999999999999999999999999987 7888887632 122334444
Q ss_pred EEEeCCceeeee----cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCC--CCccccccccccccCCCC
Q 000085 2186 SFTLNGVLVARA----KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ--SGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2186 I~dlnG~~L~s~----~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~--~~~iaFspd~~~s~ss~~ 2259 (2342)
+|+..-...... ......-+.++.|..++.-++||+.++....+- +..-. ...+.|......+.....
T Consensus 296 ~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e------~~~l~~~~~~lif~t~ssd~~~~~~ 369 (1113)
T KOG0644|consen 296 IWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHE------FEQLAWRSNLLIFVTRSSDLSSIVV 369 (1113)
T ss_pred eccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccch------hhHhhhhccceEEEeccccccccce
Confidence 444331111100 111345677888888888999998777633222 11100 111112111111113333
Q ss_pred ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEeCCCC
Q 000085 2260 FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLL-VSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2260 ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~La-SGSsDGsIrVWDi~sL 2318 (2342)
++..+-.+++|++.+|...+.+. +|...+..+.++|-+..++ +++.||+..|||+-..
T Consensus 370 ~ar~~~~~~vwnl~~g~l~H~l~-ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 370 TARNDHRLCVWNLYTGQLLHNLM-GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred eeeeeeEeeeeecccchhhhhhc-ccccceeeeeecCCCcHhhhhccCCCceEeeecccC
Confidence 34457889999999999999988 9999999999999765554 8899999999996443
No 187
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=2.6e-10 Score=146.04 Aligned_cols=236 Identities=12% Similarity=0.021 Sum_probs=151.2
Q ss_pred CceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcC---CcEEEEecCCccc--ceecccCCCC
Q 000085 1966 GTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVD---GSIKLLTSDGAKT--LETASGHCAP 2040 (2342)
Q Consensus 1966 D~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~D---GsIrVWDl~tgkl--l~tL~GHt~~ 2040 (2342)
+..+.+|+..+.. .+.+..+.. .+...+|||||+.|+..+.+ ..|++||+.+++. +..+.+|.
T Consensus 183 ~~~i~i~d~dg~~-------~~~lt~~~~---~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~-- 250 (429)
T PRK01742 183 PYEVRVADYDGFN-------QFIVNRSSQ---PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN-- 250 (429)
T ss_pred eEEEEEECCCCCC-------ceEeccCCC---ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc--
Confidence 3577888754311 122222332 23458999999988887654 3699999988753 33444443
Q ss_pred eEEEEecCCCCEEEEEe-CCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCC
Q 000085 2041 VTCLALSSDSNFLVTGS-QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH 2119 (2342)
Q Consensus 2041 VtcLAfSPDG~~LaSGS-~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH 2119 (2342)
.+++|+|||+.|+.++ .+|.+.||.++... .....+..|
T Consensus 251 -~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~---------------------------------------~~~~~lt~~ 290 (429)
T PRK01742 251 -GAPAFSPDGSRLAFASSKDGVLNIYVMGANG---------------------------------------GTPSQLTSG 290 (429)
T ss_pred -CceeECCCCCEEEEEEecCCcEEEEEEECCC---------------------------------------CCeEeeccC
Confidence 4689999999888764 68887777554210 112234456
Q ss_pred CCCeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee
Q 000085 2120 HREILCCCVSSDLGVVVSCS-DSSDLLLHSIRR-GRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2120 s~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrT-GklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~ 2197 (2342)
...+.+.+|+|||+.++.++ .+|...||++.. +.....+. +.....+++|||+.+++...++ +..|++.+......
T Consensus 291 ~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~-~~~~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l 368 (429)
T PRK01742 291 AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG-GRGYSAQISADGKTLVMINGDN-VVKQDLTSGSTEVL 368 (429)
T ss_pred CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec-CCCCCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEe
Confidence 66778899999999776554 678888887653 22223332 2224578999999888776544 55688764333222
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE
Q 000085 2198 KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV 2277 (2342)
Q Consensus 2198 ~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~ 2277 (2342)
...+ ...++.|+|||++++.++.++. ...+.+++. +++.
T Consensus 369 t~~~--~~~~~~~sPdG~~i~~~s~~g~--------------------------------------~~~l~~~~~-~G~~ 407 (429)
T PRK01742 369 SSTF--LDESPSISPNGIMIIYSSTQGL--------------------------------------GKVLQLVSA-DGRF 407 (429)
T ss_pred cCCC--CCCCceECCCCCEEEEEEcCCC--------------------------------------ceEEEEEEC-CCCc
Confidence 2112 3456789999999998874333 112334443 5666
Q ss_pred EEEEecCCCCCeEEEEEecC
Q 000085 2278 FHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPD 2297 (2342)
+..+. +|.+.+...+|+|-
T Consensus 408 ~~~l~-~~~g~~~~p~wsp~ 426 (429)
T PRK01742 408 KARLP-GSDGQVKFPAWSPY 426 (429)
T ss_pred eEEcc-CCCCCCCCcccCCC
Confidence 77777 77788899999984
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.8e-10 Score=147.55 Aligned_cols=207 Identities=14% Similarity=0.112 Sum_probs=143.2
Q ss_pred CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC---CceEEEeccCCccccccccCCCCCCccccccCCC
Q 000085 2017 DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD---TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS 2093 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D---GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG 2093 (2342)
+..|++||.+... .+.+..|...|.+.+|+|||+.|+.++.+ .+|.+||+.++...
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-------------------- 241 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-------------------- 241 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE--------------------
Confidence 5789999987654 56677888899999999999999988754 36999998764210
Q ss_pred CCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEE--EECCCCeEEEEEecCC--cEEEEE
Q 000085 2094 STPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLL--HSIRRGRLIRRLVGVD--AHAVSL 2168 (2342)
Q Consensus 2094 ~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrI--WDLrTGklIrsL~gh~--vssLSf 2168 (2342)
.+..+.+|. .+++|+|||+.|+.++ .+|.+.| ||+.++.. ..+..+. ....+|
T Consensus 242 ------------------~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~w 299 (429)
T PRK01742 242 ------------------VVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSW 299 (429)
T ss_pred ------------------EEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEE
Confidence 111223332 3579999999887764 6886555 56666654 3444332 567899
Q ss_pred ecCCcEEEEEe-CCCeEEEEEeC--CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcc
Q 000085 2169 SSEGVIMTWNK-LQHTLSSFTLN--GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTE 2245 (2342)
Q Consensus 2169 SpDG~IlVwds-sdGsI~I~dln--G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~i 2245 (2342)
+|||+.+++.. .++...+|.++ +..... ..+.. .+..|+|||++++.++.
T Consensus 300 SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~--l~~~~--~~~~~SpDG~~ia~~~~----------------------- 352 (429)
T PRK01742 300 SPDGQSILFTSDRSGSPQVYRMSASGGGASL--VGGRG--YSAQISADGKTLVMING----------------------- 352 (429)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeEE--ecCCC--CCccCCCCCCEEEEEcC-----------------------
Confidence 99999766654 45777777764 332222 12333 46789999999987641
Q ss_pred ccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2246 DFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2246 aFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
..+.+||+.+++...... .+ ...++.|+|||++|++++.+|.+.+|..
T Consensus 353 -------------------~~i~~~Dl~~g~~~~lt~-~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 353 -------------------DNVVKQDLTSGSTEVLSS-TF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred -------------------CCEEEEECCCCCeEEecC-CC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 125668988887543222 22 3456889999999999999998888874
No 189
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.26 E-value=6.8e-11 Score=138.74 Aligned_cols=221 Identities=12% Similarity=0.086 Sum_probs=152.4
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCC-CEEEEEEcCCcEEEEecCCcccceec--
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDK-EIITGGHVDGSIKLLTSDGAKTLETA-- 2034 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDG-klLASGS~DGsIrVWDl~tgkll~tL-- 2034 (2342)
..++.++.-+.|||.+...+ ++...+..|...| +.+.+.|+. +++++++.|.+||+|++++..++..+
T Consensus 106 p~la~~G~~GvIrVid~~~~------~~~~~~~ghG~sI---Neik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSG------QCSKNYRGHGGSI---NEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred eeEEeecceeEEEEEecchh------hhccceeccCccc---hhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 34566667789999986542 2333444555444 448899987 49999999999999999999998876
Q ss_pred -ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc---------------------------ccCCCCCCcc
Q 000085 2035 -SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG---------------------------TIEPSSGMGT 2086 (2342)
Q Consensus 2035 -~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~---------------------------~~~~~~~V~s 2086 (2342)
.||.+.|.++.|+++|.+|+||+.|.++++|++........+ ..-|...|.+
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 569999999999999999999999999999999842211110 0012222333
Q ss_pred ccccCCCCCceeecCC-CccccccCC----------------ceEEecCCCCCeEEEEEe--cCCCEEEEEeCCCcEEEE
Q 000085 2087 PGNSIGSSTPANASAD-KSRRRRIEG----------------PIHVLRGHHREILCCCVS--SDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2087 vs~SpDG~~Las~s~D-~s~~~~i~~----------------~l~~L~GHs~~Vt~VafS--PDg~lLaSGS~DGtIrIW 2147 (2342)
+.|- |.++.+.+-+ .+..|..++ .+..+.-....|+-+.|. +-+++||.|...|.|++|
T Consensus 257 vrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 257 VRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred HHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 3332 3344333332 233344311 122333344566666665 558899999999999999
Q ss_pred ECCCCeE------EEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2148 SIRRGRL------IRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2148 DLrTGkl------IrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
|++.... .....+..++..+||.||.+++....++.|..|+.
T Consensus 335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 9987654 22222344788999999999999999999888874
No 190
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=4.8e-10 Score=144.99 Aligned_cols=272 Identities=16% Similarity=0.131 Sum_probs=186.4
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCC---CEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDS---NFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG---~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
-.||+|+++++... +..|.||...+|.++..+.+|..+++.+.+.|.. .++++++.||+|++||...+....++..
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 46899999877654 7899999999999999999999999999998854 4788999999999999999877666522
Q ss_pred CCCCCCcc--ccccCCCCCceeecCCCc-------------ccccc----CCceEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2079 EPSSGMGT--PGNSIGSSTPANASADKS-------------RRRRI----EGPIHVLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2079 ~~~~~V~s--vs~SpDG~~Las~s~D~s-------------~~~~i----~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
.....+.. .++-.....+.....+.. ..... ......+.+|.. -.++.+++.|.+.+. .
T Consensus 101 ~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i-~ 178 (792)
T KOG1963|consen 101 NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGI-V 178 (792)
T ss_pred CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEE-E
Confidence 21111100 111100100101111100 00000 111122233332 456777776665444 4
Q ss_pred CCCcEEEEECCCCeEEEEE----ecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCc---eeeeecCC-CCCCeEEEE
Q 000085 2140 DSSDLLLHSIRRGRLIRRL----VGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGV---LVARAKLP-LSGSIGCME 2209 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGklIrsL----~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~---~L~s~~~~-Hs~~ItsLa 2209 (2342)
.+..+.+|+..++...... ..|. .++.++||++++++.+..+|+|.+|.-.+. ......+. |...|++++
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~ 258 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLS 258 (792)
T ss_pred EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeE
Confidence 4567888988775511111 0132 478999999999999999999999986551 11111122 889999999
Q ss_pred EccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCe
Q 000085 2210 ISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDI 2289 (2342)
Q Consensus 2210 fSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~I 2289 (2342)
|++||.+|++||. .+.+.+|.+.+++ .+-++ .-+++|
T Consensus 259 fS~~G~~LlSGG~-----------------------------------------E~VLv~Wq~~T~~-kqfLP-RLgs~I 295 (792)
T KOG1963|consen 259 FSSDGAYLLSGGR-----------------------------------------EGVLVLWQLETGK-KQFLP-RLGSPI 295 (792)
T ss_pred EecCCceEeeccc-----------------------------------------ceEEEEEeecCCC-ccccc-ccCCee
Confidence 9999999999973 4568999999988 33344 678899
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2290 TALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2290 tsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
..+.+|||+...+....|+.|.+-..+.+.
T Consensus 296 ~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 296 LHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred EEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 999999999999999999999999976654
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.1e-09 Score=124.38 Aligned_cols=238 Identities=17% Similarity=0.239 Sum_probs=163.8
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCC---------cc-cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDG---------AK-TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~t---------gk-ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
-+++|.+++|++|..+|.|.+..+.+ |+ .+-..++|.++|..++|. ..+|++|+ ||.|+-|.++...
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEE 92 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhh
Confidence 57899999999999999999998753 12 334558999999999998 45777776 5999999987632
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
.. ......|....+.++-...--.|+++-..|..+-++.++.|+.++.||+++
T Consensus 93 es---------------------------~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~ 145 (325)
T KOG0649|consen 93 ES---------------------------LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED 145 (325)
T ss_pred hh---------------------------ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC
Confidence 10 001122444334333222345789999999888888888999999999999
Q ss_pred CeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCc-eeeee--------cCCC-CCCeEEEEEccCCCEEEE
Q 000085 2152 GRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGV-LVARA--------KLPL-SGSIGCMEISLDGHSALI 2219 (2342)
Q Consensus 2152 GklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~-~L~s~--------~~~H-s~~ItsLafSPDGk~LaS 2219 (2342)
|+..+.+++|. ++++..-.....++.+..||++++|+.... .+... ..+| ...|-+++.+ ..++++
T Consensus 146 G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvC 223 (325)
T KOG0649|consen 146 GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVC 223 (325)
T ss_pred CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEe
Confidence 99999999997 344444222233455666677777776532 21111 1112 2346666554 557776
Q ss_pred EeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCC
Q 000085 2220 GVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNT 2299 (2342)
Q Consensus 2220 GS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~ 2299 (2342)
|+ ...+.+|++++.++..+++ ..+++..+.|-.|
T Consensus 224 Gg------------------------------------------Gp~lslwhLrsse~t~vfp--ipa~v~~v~F~~d-- 257 (325)
T KOG0649|consen 224 GG------------------------------------------GPKLSLWHLRSSESTCVFP--IPARVHLVDFVDD-- 257 (325)
T ss_pred cC------------------------------------------CCceeEEeccCCCceEEEe--cccceeEeeeecc--
Confidence 64 2458899999998888887 4567888888655
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 000085 2300 NLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2300 ~LaSGSsDGsIrVWDi~s 2317 (2342)
.++++|..+.|.-|...+
T Consensus 258 ~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 258 CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eEEEeccccceeeeeecc
Confidence 478888888888887543
No 192
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=3.8e-09 Score=131.41 Aligned_cols=285 Identities=15% Similarity=0.173 Sum_probs=182.0
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEE-----eCC-----CceEEEecc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTG-----SQD-----TTILLWRIH 2068 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSG-----S~D-----GTVrVWDl~ 2068 (2342)
+...+++++|+++|.+ .+..++|++..++..+.+...- .+.++.|+|.|.+|.|= ..| ..+++|++.
T Consensus 37 ~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred ceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 5668899999998886 4778999999887644333322 78999999999998862 223 346799999
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccCC---ceEEecCCCCCeEEEEEecCC--CEEE-----EE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG---PIHVLRGHHREILCCCVSSDL--GVVV-----SC 2138 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~---~l~~L~GHs~~Vt~VafSPDg--~lLa-----SG 2138 (2342)
++.....+......+ ++..|+.|....+-...+....++... ..+. -|...|+.+.+||.+ ..|+ ++
T Consensus 114 t~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~k 190 (566)
T KOG2315|consen 114 TGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKK 190 (566)
T ss_pred cceehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccceeee--eeccceeeEEecCCCCCceEEEEccCCC
Confidence 843322222222222 466666665544322222222222111 1111 133444444444431 1111 11
Q ss_pred eCCCcEEE---------------------------------------------------------EECCCCeEEEEEec-
Q 000085 2139 SDSSDLLL---------------------------------------------------------HSIRRGRLIRRLVG- 2160 (2342)
Q Consensus 2139 S~DGtIrI---------------------------------------------------------WDLrTGklIrsL~g- 2160 (2342)
|.-+.|+| .++....+.-.+..
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~ 270 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE 270 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC
Confidence 22223333 33332222222322
Q ss_pred CCcEEEEEecCCc--EEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccC
Q 000085 2161 VDAHAVSLSSEGV--IMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLN 2238 (2342)
Q Consensus 2161 h~vssLSfSpDG~--IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~ 2238 (2342)
..+++++|+++|+ .++++..-.++.+|++++..+... -.++=+++-|+|.|++++.+|.++.
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df---~egpRN~~~fnp~g~ii~lAGFGNL------------- 334 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF---PEGPRNTAFFNPHGNIILLAGFGNL------------- 334 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC---CCCCccceEECCCCCEEEEeecCCC-------------
Confidence 2378999999995 567777778899999999876643 3577889999999999998874332
Q ss_pred CCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC------CCcEEE
Q 000085 2239 SKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA------DKQLIV 2312 (2342)
Q Consensus 2239 ~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs------DGsIrV 2312 (2342)
.|.|.|||+.+.+++..+. ...-+-+.|+|||++|+|++. |+.++|
T Consensus 335 -------------------------~G~mEvwDv~n~K~i~~~~---a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Ki 386 (566)
T KOG2315|consen 335 -------------------------PGDMEVWDVPNRKLIAKFK---AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKI 386 (566)
T ss_pred -------------------------CCceEEEeccchhhccccc---cCCceEEEEcCCCcEEEEEeccccEEecCCeEE
Confidence 5889999999999888877 234577899999999999874 799999
Q ss_pred EeCCCC--Chhhhh-hhhhccccC
Q 000085 2313 FTDPAL--SLKVVD-QMLKLGWEG 2333 (2342)
Q Consensus 2313 WDi~sL--s~k~Ld-QLLk~GWeg 2333 (2342)
|+..+- ..+... .+++.-|.+
T Consensus 387 whytG~~l~~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 387 WHYTGSLLHEKMFKSELLQVEWRP 410 (566)
T ss_pred EEecCceeehhhhhHhHhheeeee
Confidence 996543 345556 488888874
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.20 E-value=7.1e-09 Score=127.93 Aligned_cols=252 Identities=10% Similarity=0.082 Sum_probs=154.8
Q ss_pred EecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEE-cCCcEEEEecC-Cccc--ceeccc
Q 000085 1961 ASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGH-VDGSIKLLTSD-GAKT--LETASG 2036 (2342)
Q Consensus 1961 aSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS-~DGsIrVWDl~-tgkl--l~tL~G 2036 (2342)
++.+.++.|++|+..+. ..+.....+.. . .....++++|++++|++++ .++.|.+|+++ +++. +....
T Consensus 6 ~~~~~~~~I~~~~~~~~---g~l~~~~~~~~-~---~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~- 77 (330)
T PRK11028 6 IASPESQQIHVWNLNHE---GALTLLQVVDV-P---GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP- 77 (330)
T ss_pred EEcCCCCCEEEEEECCC---CceeeeeEEec-C---CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-
Confidence 34456788899986431 11112222211 1 1234589999999876664 58889999987 3432 22222
Q ss_pred CCCCeEEEEecCCCCEEEEEeC-CCceEEEeccCCcccccc--ccCCCCCCccccccCCCCCceeecC--CCccccccCC
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTG--TIEPSSGMGTPGNSIGSSTPANASA--DKSRRRRIEG 2111 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~--~~~~~~~V~svs~SpDG~~Las~s~--D~s~~~~i~~ 2111 (2342)
..+....++|+|++++|++++. ++.|.+|++......... ..........+.++|+++.+.+... +.+..|++..
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 2345678999999999988774 889999999743221111 1112234566778999988854443 3334455432
Q ss_pred --ceE-------EecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCC--Ce--EEEEEecCC--------cEEEEEe
Q 000085 2112 --PIH-------VLRGHHREILCCCVSSDLGVVVSCSD-SSDLLLHSIRR--GR--LIRRLVGVD--------AHAVSLS 2169 (2342)
Q Consensus 2112 --~l~-------~L~GHs~~Vt~VafSPDg~lLaSGS~-DGtIrIWDLrT--Gk--lIrsL~gh~--------vssLSfS 2169 (2342)
.+. ... .......++|+|+++++++++. +++|.+||+.. ++ .+..+.... ...+.++
T Consensus 158 ~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~ 236 (330)
T PRK11028 158 DGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT 236 (330)
T ss_pred CCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence 110 111 1234578999999999987776 89999999973 33 344443211 2257899
Q ss_pred cCCcEEEEEe-CCCeEEEEEeC--Cceeeeec-CCCCCCeEEEEEccCCCEEEEEe
Q 000085 2170 SEGVIMTWNK-LQHTLSSFTLN--GVLVARAK-LPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2170 pDG~IlVwds-sdGsI~I~dln--G~~L~s~~-~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
|||++++... .++.|.+|+++ +..+.... ..-......+.++|||++|+++.
T Consensus 237 pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 237 PDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred CCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEE
Confidence 9999776664 46789999984 32211111 01113456789999999999874
No 194
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.19 E-value=3.3e-10 Score=139.83 Aligned_cols=183 Identities=17% Similarity=0.190 Sum_probs=134.5
Q ss_pred cCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCc-------ccceec
Q 000085 1963 PASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH-DKEIITGGHVDGSIKLLTSDGA-------KTLETA 2034 (2342)
Q Consensus 1963 sSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp-DGklLASGS~DGsIrVWDl~tg-------kll~tL 2034 (2342)
+++++.|-||....- -.+|+.+--.-..-..++-+.|.| |...||.++.||.|++|.+..+ .....+
T Consensus 599 ~g~gG~iai~el~~P-----GrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l 673 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEP-----GRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL 673 (1012)
T ss_pred cCCCceEEEEEcCCC-----CCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee
Confidence 455788999975431 123332211111112355678888 4559999999999999998754 234678
Q ss_pred ccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2035 SGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
.+|.+.|+.+.|+| ....|++++.|.||++||+.++. ..
T Consensus 674 t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~----------------------------------------~~ 713 (1012)
T KOG1445|consen 674 TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK----------------------------------------LY 713 (1012)
T ss_pred ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh----------------------------------------hh
Confidence 89999999999999 45789999999999999998852 23
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-EEEEEec---CCcEEEEEecCCcEEEEEeCC----CeEE
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR-LIRRLVG---VDAHAVSLSSEGVIMTWNKLQ----HTLS 2185 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk-lIrsL~g---h~vssLSfSpDG~IlVwdssd----GsI~ 2185 (2342)
..+.||++.|..++|||+|+.++|.+.||+|++|..+++. .++.-.+ ....-+.|..||++++...-+ .++.
T Consensus 714 ~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~ 793 (1012)
T KOG1445|consen 714 SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQ 793 (1012)
T ss_pred heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhh
Confidence 4578999999999999999999999999999999998764 3333222 234567788899988776544 3566
Q ss_pred EEEeC
Q 000085 2186 SFTLN 2190 (2342)
Q Consensus 2186 I~dln 2190 (2342)
+|+..
T Consensus 794 ~Y~Aq 798 (1012)
T KOG1445|consen 794 MYDAQ 798 (1012)
T ss_pred hhhhh
Confidence 77643
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.19 E-value=2.9e-10 Score=133.47 Aligned_cols=227 Identities=16% Similarity=0.101 Sum_probs=168.8
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc---cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEec-cCCcc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK---TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI-HRAFT 2072 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk---ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl-~tg~~ 2072 (2342)
.+++|.+|++|+..+|.+.....|.||.....+ ..+++..|...|++++|+|..+.|+||+.|..-.||.. ..+.-
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 456789999999999999999999999987654 56889999999999999999999999999999999999 44443
Q ss_pred cccc-ccCCCCCCccccccCCCCCceeecCCCccc-cccCCc------eEEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 000085 2073 SRTG-TIEPSSGMGTPGNSIGSSTPANASADKSRR-RRIEGP------IHVLRGHHREILCCCVSSDLGVVVSCSDSSDL 2144 (2342)
Q Consensus 2073 i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i~~~------l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtI 2144 (2342)
..+. .........++.|+|.++.+++++...... +..++. .++-+.+...|++++|+|++-+++.||.|+.+
T Consensus 91 kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~ 170 (361)
T KOG1523|consen 91 KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKC 170 (361)
T ss_pred ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcce
Confidence 3343 456778889999999999999888765432 222111 12234567889999999999999999999999
Q ss_pred EEEECCC------------------CeEEEEEe--cCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCce--eeeecCCCC
Q 000085 2145 LLHSIRR------------------GRLIRRLV--GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL--VARAKLPLS 2202 (2342)
Q Consensus 2145 rIWDLrT------------------GklIrsL~--gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~--L~s~~~~Hs 2202 (2342)
+|+..-- |+++..+. +.-++.+.|+++|..+.|-..+..+.+-+..+.. +......+
T Consensus 171 rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~- 249 (361)
T KOG1523|consen 171 RVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ- 249 (361)
T ss_pred eEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc-
Confidence 9987420 12222221 1226789999999999999999998888776542 22222223
Q ss_pred CCeEEEEEccCCCEEEEEeCCCC
Q 000085 2203 GSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2203 ~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
-+..++.|-.+...+.+| .+|.
T Consensus 250 lP~ls~~~ise~~vv~ag-~~c~ 271 (361)
T KOG1523|consen 250 LPLLSVSWISENSVVAAG-YDCG 271 (361)
T ss_pred CCceeeEeecCCceeecC-CCCC
Confidence 567777776655544433 4443
No 196
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=4.5e-09 Score=134.95 Aligned_cols=216 Identities=14% Similarity=0.122 Sum_probs=148.5
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC---CCceEEEeccCCccccccccCCCCCCccccccCCCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ---DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~---DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~ 2094 (2342)
..|.+||.++ ...+.+..|...|.+.+|+|||+.|+..+. +..|.+||+.++..
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---------------------- 238 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---------------------- 238 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----------------------
Confidence 4788889854 445667778889999999999999988764 46899999877421
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCc--EEEEECCCCeEEEEEecCC--cEEEEEe
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSD--LLLHSIRRGRLIRRLVGVD--AHAVSLS 2169 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGt--IrIWDLrTGklIrsL~gh~--vssLSfS 2169 (2342)
..+..+.+.+.+.+|+|||+.++ +.+.+|. |++||+.++...+ +..+. ....+|+
T Consensus 239 -------------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~s 298 (435)
T PRK05137 239 -------------------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYS 298 (435)
T ss_pred -------------------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEc
Confidence 12233445667889999998765 5566665 7788998876544 43332 4568999
Q ss_pred cCCcEEEEEeC-CC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccc
Q 000085 2170 SEGVIMTWNKL-QH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTED 2246 (2342)
Q Consensus 2170 pDG~IlVwdss-dG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ia 2246 (2342)
|||+.+++... .+ .|+++++.+........ +...+....|+|||++++..+.+..
T Consensus 299 pDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~-~~~~~~~~~~SpdG~~ia~~~~~~~--------------------- 356 (435)
T PRK05137 299 PDGSQIVFESDRSGSPQLYVMNADGSNPRRISF-GGGRYSTPVWSPRGDLIAFTKQGGG--------------------- 356 (435)
T ss_pred CCCCEEEEEECCCCCCeEEEEECCCCCeEEeec-CCCcccCeEECCCCCEEEEEEcCCC---------------------
Confidence 99998877653 33 57777777654443322 3456677899999999987652111
Q ss_pred cccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC------CcEEEEeCCCC
Q 000085 2247 FDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD------KQLIVFTDPAL 2318 (2342)
Q Consensus 2247 Fspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD------GsIrVWDi~sL 2318 (2342)
+..|.+||+.++.. ..+. ....+....|+|||++|+..+.+ ..|.+++..+.
T Consensus 357 -----------------~~~i~~~d~~~~~~-~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 357 -----------------QFSIGVMKPDGSGE-RILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred -----------------ceEEEEEECCCCce-Eecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 23588889866543 3333 23357788999999998865543 25777786554
No 197
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=6.5e-09 Score=133.38 Aligned_cols=217 Identities=14% Similarity=0.105 Sum_probs=144.4
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC---CCceEEEeccCCccccccccCCCCCCccccccCCCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ---DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~---DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~ 2094 (2342)
..|.+||.+.... +.+..+...+.+.+|||||+.|+..+. +..+.+|++.++...
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~--------------------- 236 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--------------------- 236 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---------------------
Confidence 3689999876543 445557778999999999999987653 456888888764211
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEE-eCCC--cEEEEECCCCeEEEEEecC-CcEEEEEec
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSC-SDSS--DLLLHSIRRGRLIRRLVGV-DAHAVSLSS 2170 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSG-S~DG--tIrIWDLrTGklIrsL~gh-~vssLSfSp 2170 (2342)
.+..+.+| +..++|+|||+.|+.. +.+| .|++||+.+++..+....+ .....+|+|
T Consensus 237 -----------------~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP 296 (429)
T PRK03629 237 -----------------QVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP 296 (429)
T ss_pred -----------------EccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC
Confidence 01112222 3457899999988754 4455 5899999988765544433 356789999
Q ss_pred CCcEEEEEeCC-Ce--EEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccc
Q 000085 2171 EGVIMTWNKLQ-HT--LSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDF 2247 (2342)
Q Consensus 2171 DG~IlVwdssd-Gs--I~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaF 2247 (2342)
||+.+++.... +. ++.+++.+....... .+.....+..|+|||++++..+.+..
T Consensus 297 DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt-~~~~~~~~~~~SpDG~~Ia~~~~~~g---------------------- 353 (429)
T PRK03629 297 DSQNLAYTSDQAGRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGG---------------------- 353 (429)
T ss_pred CCCEEEEEeCCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEEccCC----------------------
Confidence 99988776543 44 444455554333322 13345667899999999987652211
Q ss_pred ccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCc---EEEEeCCCC
Q 000085 2248 DLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQ---LIVFTDPAL 2318 (2342)
Q Consensus 2248 spd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGs---IrVWDi~sL 2318 (2342)
...|++||+.+++.. .+... .......|+|||++|+.++.|+. +.+++.++.
T Consensus 354 ----------------~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 354 ----------------QQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred ----------------CceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 245889999888743 33312 23456789999999999988775 677776544
No 198
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=1.8e-10 Score=140.49 Aligned_cols=291 Identities=14% Similarity=0.128 Sum_probs=206.8
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec-ccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA-SGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL-~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
.+|+.|.|...|..|++|+.|..|.+||+..++....+ .||...|....|-|. ...+++++.||.|++=.+......
T Consensus 143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~ 222 (559)
T KOG1334|consen 143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV 222 (559)
T ss_pred CccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence 44556999999999999999999999999998876655 579999999999884 578999999999999877654333
Q ss_pred c-cc-ccCCCCCCccccccCCCCCc-eeecCCCccc---cccCCc---eEEecCCCC---CeEEEEEecCCC-EEEEEeC
Q 000085 2074 R-TG-TIEPSSGMGTPGNSIGSSTP-ANASADKSRR---RRIEGP---IHVLRGHHR---EILCCCVSSDLG-VVVSCSD 2140 (2342)
Q Consensus 2074 ~-t~-~~~~~~~V~svs~SpDG~~L-as~s~D~s~~---~~i~~~---l~~L~GHs~---~Vt~VafSPDg~-lLaSGS~ 2140 (2342)
. +. ...|.+.+.-++.-|+.... .+++.++... .+...+ ...-..+.. ....++..|... .+++|+.
T Consensus 223 e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~ 302 (559)
T KOG1334|consen 223 ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGS 302 (559)
T ss_pred ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCCh
Confidence 2 22 55677788888888876543 5555554432 222212 222223333 456788888654 7899999
Q ss_pred CCcEEEEECCCCe------EEEEEecC--------CcEEEEEecCCcEEEEEeCCCeEEEEEeC---C----------ce
Q 000085 2141 SSDLLLHSIRRGR------LIRRLVGV--------DAHAVSLSSEGVIMTWNKLQHTLSSFTLN---G----------VL 2193 (2342)
Q Consensus 2141 DGtIrIWDLrTGk------lIrsL~gh--------~vssLSfSpDG~IlVwdssdGsI~I~dln---G----------~~ 2193 (2342)
|..+++||.+.-. .+..+..+ .+++++++.+|.-++....+-.|++|.-+ | ..
T Consensus 303 dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~ 382 (559)
T KOG1334|consen 303 DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQY 382 (559)
T ss_pred hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhc
Confidence 9999999987532 22333221 37899999888877777788888888543 2 11
Q ss_pred eeeecCCCC--CCeEEEEE-ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2194 VARAKLPLS--GSIGCMEI-SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2194 L~s~~~~Hs--~~ItsLaf-SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
+.....+|. ..|.++-| -|...|+++|+ | -|.|.||
T Consensus 383 ~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS-D----------------------------------------CGhIFiW 421 (559)
T KOG1334|consen 383 VKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS-D----------------------------------------CGHIFIW 421 (559)
T ss_pred cchhhcccccccccceeeeccCccceEEecC-c----------------------------------------cceEEEE
Confidence 222233443 34666654 46778888776 2 3569999
Q ss_pred ECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC----CChhhhhhhhhc
Q 000085 2271 DLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA----LSLKVVDQMLKL 2329 (2342)
Q Consensus 2271 DL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s----Ls~k~LdQLLk~ 2329 (2342)
+-.+++.+..+. +...-|+||.-+|--..|+++|-|..|+||...+ ...+.+++.+++
T Consensus 422 ~K~t~eii~~Me-gDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~~lk~vi~r 483 (559)
T KOG1334|consen 422 DKKTGEIIRFME-GDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEPTLLKQVIKR 483 (559)
T ss_pred ecchhHHHHHhh-cccceEeccCCCCCCchhhccCCccceeeecCCccccccChhhHHHHHhh
Confidence 999999988888 5455899999999999999999999999999532 223455666653
No 199
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=4.6e-09 Score=134.81 Aligned_cols=214 Identities=13% Similarity=0.029 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCEEEEEEcC---CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCC--ceEEEeccCCcc
Q 000085 1999 SAVVSITHDKEIITGGHVD---GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDT--TILLWRIHRAFT 2072 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~D---GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DG--TVrVWDl~tg~~ 2072 (2342)
+...+|+|||+.|+..+.+ ..|++||+.+++... +..+.+.+.+++|+|||+.|+ +.+.++ .|.+||+.++..
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~ 284 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL 284 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe
Confidence 3458999999988877643 469999998876533 334455566889999998775 556666 488888776421
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CCc--EEEEEC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SSD--LLLHSI 2149 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DGt--IrIWDL 2149 (2342)
..+..|.......+|+|||+.++.++. +|. |+++|+
T Consensus 285 -----------------------------------------~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 285 -----------------------------------------TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred -----------------------------------------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 122334344567799999998877664 454 777787
Q ss_pred CCCeEEEE-EecCCcEEEEEecCCcEEEEEeCCC---eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2150 RRGRLIRR-LVGVDAHAVSLSSEGVIMTWNKLQH---TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2150 rTGklIrs-L~gh~vssLSfSpDG~IlVwdssdG---sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
.+++..+. +.+......+|||||+.+++...++ .|.+|++.+...... .+........|+|||++++..+..+.
T Consensus 324 ~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L--t~~~~~~~p~~spdG~~i~~~s~~~g 401 (433)
T PRK04922 324 SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL--TPGSLDESPSFAPNGSMVLYATREGG 401 (433)
T ss_pred CCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC--CCCCCCCCceECCCCCEEEEEEecCC
Confidence 77764432 2233345689999999888764332 588888865444332 23334567799999999987753221
Q ss_pred CCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2226 TNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2226 ~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
.+.|.++|+..+ ....+. .+.+.+...+|+|
T Consensus 402 --------------------------------------~~~L~~~~~~g~-~~~~l~-~~~g~~~~p~wsp 432 (433)
T PRK04922 402 --------------------------------------RGVLAAVSTDGR-VRQRLV-SADGEVREPAWSP 432 (433)
T ss_pred --------------------------------------ceEEEEEECCCC-ceEEcc-cCCCCCCCCccCC
Confidence 346888888543 345554 3455677777876
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.14 E-value=6.1e-09 Score=124.59 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=118.5
Q ss_pred CCCEEEEEEcCCcEEEEecCCcccceeccc---CCCCeEEEEecCCCCEEEEE-e-CCCceEEEeccCCccccccccCCC
Q 000085 2007 DKEIITGGHVDGSIKLLTSDGAKTLETASG---HCAPVTCLALSSDSNFLVTG-S-QDTTILLWRIHRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~tgkll~tL~G---Ht~~VtcLAfSPDG~~LaSG-S-~DGTVrVWDl~tg~~i~t~~~~~~ 2081 (2342)
+.+.|++.-. ..|+|||+.+.+.+.++.. |...+.++++++.+.+|+-= + ..|.|.|||..+.
T Consensus 96 Nr~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl----------- 163 (391)
T KOG2110|consen 96 NRKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL----------- 163 (391)
T ss_pred ccceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc-----------
Confidence 4455555543 4499999999999887753 55668788888778888863 2 3588999998773
Q ss_pred CCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCc-EEEEECCCCeEEEEEec
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSD-LLLHSIRRGRLIRRLVG 2160 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGt-IrIWDLrTGklIrsL~g 2160 (2342)
+++..+..|.+.+-|++|+++|.++||+|..|+ |+|+++.+|+.+..|+.
T Consensus 164 -----------------------------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR 214 (391)
T KOG2110|consen 164 -----------------------------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR 214 (391)
T ss_pred -----------------------------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC
Confidence 345567899999999999999999999999997 68999999999999875
Q ss_pred C----CcEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2161 V----DAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2161 h----~vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
. .+..++|++|+.++...+.+++|++|.+..
T Consensus 215 G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 215 GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 3 478999999999999999999999999865
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.14 E-value=7.6e-09 Score=123.76 Aligned_cols=233 Identities=13% Similarity=0.175 Sum_probs=161.9
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCc--eEEEeccCCcccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT--ILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGT--VrVWDl~tg~~i~t~ 2076 (2342)
+..+.|..|...|..|+.|| .++|+.+..............|.-+-|+. .++|..+.+.. +++.++.....+
T Consensus 8 i~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I--- 81 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI--- 81 (391)
T ss_pred eeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE---
Confidence 34466888899999999888 47777665332111111222355555653 45555554433 666666543111
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
.. .....+|.+|.++. +.++.+=.+ .|+|||+++.+.+.
T Consensus 82 -------------------------------------Ce-~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLh 120 (391)
T KOG2110|consen 82 -------------------------------------CE-IFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLH 120 (391)
T ss_pred -------------------------------------EE-EecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeeh
Confidence 01 11245788888854 455555554 49999999999999
Q ss_pred EEecC---C--cEEEEEecCCcEEEEEe--CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC
Q 000085 2157 RLVGV---D--AHAVSLSSEGVIMTWNK--LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229 (2342)
Q Consensus 2157 sL~gh---~--vssLSfSpDG~IlVwds--sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~ 2229 (2342)
++... . ...++.+.++.++++.. ..|.|.+|+...-........|.+.+.|++|+++|.+|+|+|..|+
T Consensus 121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGT---- 196 (391)
T KOG2110|consen 121 TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGT---- 196 (391)
T ss_pred hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCce----
Confidence 88653 2 34445555666888863 3589999998654333333459999999999999999999986554
Q ss_pred CcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC-CCeEEEEEecCCCEEEEEeCCC
Q 000085 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG-QDITALALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2230 i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs-~~ItsLafSPDG~~LaSGSsDG 2308 (2342)
.|+|+.+.+|+.++.+..|-. ..|.+++|+||+++|.+.+..+
T Consensus 197 ------------------------------------VIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 197 ------------------------------------VIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE 240 (391)
T ss_pred ------------------------------------EEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC
Confidence 499999999999999885433 4589999999999999999999
Q ss_pred cEEEEeCCCC
Q 000085 2309 QLIVFTDPAL 2318 (2342)
Q Consensus 2309 sIrVWDi~sL 2318 (2342)
+|.||.+..-
T Consensus 241 TVHiFKL~~~ 250 (391)
T KOG2110|consen 241 TVHIFKLEKV 250 (391)
T ss_pred eEEEEEeccc
Confidence 9999995433
No 202
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=6.4e-10 Score=138.03 Aligned_cols=235 Identities=14% Similarity=0.156 Sum_probs=155.7
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC------c--
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG------A-- 2028 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t------g-- 2028 (2342)
...+++++-++++++|+.........-.+...++| .++...|.|++++++++.+.+|+-||+|+.|++.. .
T Consensus 306 ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~d 384 (577)
T KOG0642|consen 306 EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYD 384 (577)
T ss_pred CCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccC
Confidence 34678899999999998732111111112222222 22344567799999999999999999999996531 1
Q ss_pred --ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc-ccCCCCCCccccccCCCCC--ceeecCCC
Q 000085 2029 --KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG-TIEPSSGMGTPGNSIGSST--PANASADK 2103 (2342)
Q Consensus 2029 --kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~-~~~~~~~V~svs~SpDG~~--Las~s~D~ 2103 (2342)
....++.||++.|+.+++|+....|++||.||||+.|+...... .++ .........++.+...-.. +++.....
T Consensus 385 p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~ 463 (577)
T KOG0642|consen 385 PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGY 463 (577)
T ss_pred cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhccccc
Confidence 23467899999999999999999999999999999999877543 111 1111111111111100000 00000000
Q ss_pred cc--ccccCCceEEecC-------CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCC
Q 000085 2104 SR--RRRIEGPIHVLRG-------HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEG 2172 (2342)
Q Consensus 2104 s~--~~~i~~~l~~L~G-------Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG 2172 (2342)
.. ...+...+..+.. ....+.-+.++|.+.+.+++..|+.|+++|..++..+.....|. ++.+++.++|
T Consensus 464 ~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng 543 (577)
T KOG0642|consen 464 TSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNG 543 (577)
T ss_pred ccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCC
Confidence 00 0111111222211 12456778889999999999999999999999999998887764 7889999999
Q ss_pred cEEEEEeCCCeEEEEEeCCce
Q 000085 2173 VIMTWNKLQHTLSSFTLNGVL 2193 (2342)
Q Consensus 2173 ~IlVwdssdGsI~I~dlnG~~ 2193 (2342)
-+++.+..++.+.+|.+..+.
T Consensus 544 ~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 544 PYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ceEEeecCCceeehhhccchh
Confidence 999999999999999886543
No 203
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=4.6e-10 Score=139.10 Aligned_cols=229 Identities=16% Similarity=0.138 Sum_probs=158.7
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCc--eeecCCCccccccC
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTP--ANASADKSRRRRIE 2110 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~L--as~s~D~s~~~~i~ 2110 (2342)
.+.||++.|.||...|.|.+|++||.||+|+||.+.++.|+.+.. ....|.+++|+|.+..- ++.........+.
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp- 471 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP- 471 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCc-
Confidence 467899999999999999999999999999999999999887762 34478888888876543 3333322111100
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEEEE----eCCCcEEEEECCC------CeEEEEEecCCcEEEEEecCCcEEEEEeC
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVVSC----SDSSDLLLHSIRR------GRLIRRLVGVDAHAVSLSSEGVIMTWNKL 2180 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLaSG----S~DGtIrIWDLrT------GklIrsL~gh~vssLSfSpDG~IlVwdss 2180 (2342)
..| ..+..-+....++++ ..|+.+..|.-.. |-++..-....+..++|+..|.+++....
T Consensus 472 -----~~G-----~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 472 -----IFG-----DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred -----ccc-----chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 001 000001111222222 2355677776431 21222222345889999999999887654
Q ss_pred C---CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCC
Q 000085 2181 Q---HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDN 2257 (2342)
Q Consensus 2181 d---GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss 2257 (2342)
+ ..+.++.+........+....+.|.++.|+|...++++++
T Consensus 542 ~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT------------------------------------ 585 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT------------------------------------ 585 (733)
T ss_pred CCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe------------------------------------
Confidence 3 4677888764443333333678899999999999998886
Q ss_pred CCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2258 NRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2258 ~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
...|+|||+...+.+..+. .....|.+++++|.|..|+.|+.|+.+..||.+-
T Consensus 586 ------q~~vRiYdL~kqelvKkL~-tg~kwiS~msihp~GDnli~gs~d~k~~WfDldl 638 (733)
T KOG0650|consen 586 ------QRSVRIYDLSKQELVKKLL-TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDL 638 (733)
T ss_pred ------ccceEEEehhHHHHHHHHh-cCCeeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence 3569999998887777766 4556899999999999999999999999999653
No 204
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=8.6e-09 Score=132.23 Aligned_cols=214 Identities=11% Similarity=0.025 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCEEEEEEc---CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEE-eCCC--ceEEEeccCCcc
Q 000085 1999 SAVVSITHDKEIITGGHV---DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTG-SQDT--TILLWRIHRAFT 2072 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~---DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSG-S~DG--TVrVWDl~tg~~ 2072 (2342)
+...+|||||+.|+..+. +..|++|++.+|+... +....+.+..++|+|||+.|+.. +.++ .|.+||+.++..
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~ 279 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI 279 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 456899999998876543 4579999998875432 22223334568999999988754 4455 477788766421
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC-C--cEEEEEC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS-S--DLLLHSI 2149 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D-G--tIrIWDL 2149 (2342)
..+..+...+....|+|||+.|+.++.+ | .|+++|+
T Consensus 280 -----------------------------------------~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 280 -----------------------------------------RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred -----------------------------------------EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 1122233456788999999988776654 4 4555577
Q ss_pred CCCeEEEEE-ecCCcEEEEEecCCcEEEEEeCC---CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2150 RRGRLIRRL-VGVDAHAVSLSSEGVIMTWNKLQ---HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2150 rTGklIrsL-~gh~vssLSfSpDG~IlVwdssd---GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
.++...+.. .+......+++|||+.+++.... ..+.+|++.+........ ........|+|||++++.++.++.
T Consensus 319 ~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~--~~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 319 NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD--TFLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred CCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC--CCCCCCceECCCCCEEEEEEcCCC
Confidence 666543322 22234568899999988776433 357778876544433221 123446789999999998874433
Q ss_pred CCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2226 TNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2226 ~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
...+.++++. +.....+. +|.+.+...+|+|
T Consensus 397 --------------------------------------~~~l~~~~~~-G~~~~~l~-~~~~~~~~p~Wsp 427 (429)
T PRK03629 397 --------------------------------------GSVLNLVSTD-GRFKARLP-ATDGQVKFPAWSP 427 (429)
T ss_pred --------------------------------------ceEEEEEECC-CCCeEECc-cCCCCcCCcccCC
Confidence 2457888884 44456666 6777888899987
No 205
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=1.7e-09 Score=128.18 Aligned_cols=242 Identities=14% Similarity=0.170 Sum_probs=164.6
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
.+-+.+|.+.|.++.|+.++++|++|+.|..++||.+...... .+.
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~----------------------------------k~~ 94 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR----------------------------------KTP 94 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh----------------------------------cCC
Confidence 4456789999999999999999999999999999999763111 112
Q ss_pred CceEEec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC----CcEEEEEecCCcEEEEEeCCCeEE
Q 000085 2111 GPIHVLR-GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV----DAHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2111 ~~l~~L~-GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh----~vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
+++.... .|...|.|++|......+++|+.+|+|..+|+.+.+.+..+... .++.+..+|-.++++....++.+.
T Consensus 95 KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~ 174 (609)
T KOG4227|consen 95 KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVS 174 (609)
T ss_pred CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEE
Confidence 3443333 35689999999999999999999999999999999988877643 367888888888888888899999
Q ss_pred EEEeCCce-eeeecCC--CCCCeEEEEEccCCC-EEEEEeCCCCCCCCCcccccccCCCCCCcc----------------
Q 000085 2186 SFTLNGVL-VARAKLP--LSGSIGCMEISLDGH-SALIGVNSSSTNNGSYDNIQGLNSKQSGTE---------------- 2245 (2342)
Q Consensus 2186 I~dlnG~~-L~s~~~~--Hs~~ItsLafSPDGk-~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~i---------------- 2245 (2342)
+|++...+ ....... ......++.|+|... +|++.+..+. ..+|+...++....
T Consensus 175 ~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G------~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M 248 (609)
T KOG4227|consen 175 FIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGG------PNVFDRRMQARPVYQRSMFKGLPQENTEWM 248 (609)
T ss_pred EEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCC------CCceeeccccchHHhhhccccCcccchhhh
Confidence 99986432 1111111 445778899999764 4555554444 34455555442211
Q ss_pred --ccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCC-------CeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2246 --DFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQ-------DITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2246 --aFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~-------~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
.|++.+....+..+ -..-.+||+.+..+ .+++..|.. .+.+++|--|.. +++|+.+-.|++|.+|
T Consensus 249 ~~~~~~~G~Q~msiRR----~~~P~~~D~~S~R~-~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 249 GSLWSPSGNQFMSIRR----GKCPLYFDFISQRC-FVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLP 322 (609)
T ss_pred heeeCCCCCeehhhhc----cCCCEEeeeecccc-eeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecC
Confidence 22222222211111 22334567665432 333333432 467788876665 9999999999999976
Q ss_pred CC
Q 000085 2317 AL 2318 (2342)
Q Consensus 2317 sL 2318 (2342)
.-
T Consensus 323 ~~ 324 (609)
T KOG4227|consen 323 RA 324 (609)
T ss_pred CC
Confidence 43
No 206
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=5.4e-09 Score=134.16 Aligned_cols=215 Identities=16% Similarity=0.140 Sum_probs=144.6
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC---CceEEEeccCCccccccccCCCCCCccccccCCCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD---TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D---GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~ 2094 (2342)
..|.+||.++ ...+.+..|...|.+.+|+|||+.|+.++.+ ..|.+||+.++...
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--------------------- 241 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--------------------- 241 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---------------------
Confidence 4689999864 4455566778889999999999999988743 46889998764211
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCC--cEEEEECCCCeEEEEEecCC--cEEEEEe
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSS--DLLLHSIRRGRLIRRLVGVD--AHAVSLS 2169 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DG--tIrIWDLrTGklIrsL~gh~--vssLSfS 2169 (2342)
.+..+.+...++.|+|||+.++ +.+.+| .|++||+.+++..+ +..+. ....+|+
T Consensus 242 --------------------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~s 300 (433)
T PRK04922 242 --------------------LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWA 300 (433)
T ss_pred --------------------EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEEC
Confidence 1112223345678999998775 555665 59999999887544 33332 3568999
Q ss_pred cCCcEEEEEeC-CCe--EEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccc
Q 000085 2170 SEGVIMTWNKL-QHT--LSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTED 2246 (2342)
Q Consensus 2170 pDG~IlVwdss-dGs--I~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ia 2246 (2342)
|||+.+++... .+. ++++++.+........ +......++|+|||++++..+.++.
T Consensus 301 pDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-~g~~~~~~~~SpDG~~Ia~~~~~~~--------------------- 358 (433)
T PRK04922 301 PDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF-QGNYNARASVSPDGKKIAMVHGSGG--------------------- 358 (433)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCeEEeec-CCCCccCEEECCCCCEEEEEECCCC---------------------
Confidence 99998877653 444 5555655443333222 3334557899999999987642111
Q ss_pred cccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCC
Q 000085 2247 FDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD---KQLIVFTDPA 2317 (2342)
Q Consensus 2247 Fspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD---GsIrVWDi~s 2317 (2342)
...|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.+++..+
T Consensus 359 -----------------~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 359 -----------------QYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -----------------ceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 246999999888754 333 33345678999999998877653 4577787654
No 207
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=1.1e-08 Score=131.30 Aligned_cols=217 Identities=12% Similarity=0.041 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCEEEEEEcC---CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCcccc
Q 000085 1999 SAVVSITHDKEIITGGHVD---GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~D---GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~ 2074 (2342)
+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.++...||.++...
T Consensus 198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--- 273 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG--- 273 (427)
T ss_pred cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCC---
Confidence 3458999999988877643 359999999886543 333445667899999998876 57888888888765310
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEEC--CC
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SSDLLLHSI--RR 2151 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DGtIrIWDL--rT 2151 (2342)
+....+..|...+....|+|||+.++..+. +|...+|.+ .+
T Consensus 274 ------------------------------------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 274 ------------------------------------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred ------------------------------------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 011223334444566789999998876554 466666654 45
Q ss_pred CeEEEE-EecCCcEEEEEecCCcEEEEEeCCC---eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2152 GRLIRR-LVGVDAHAVSLSSEGVIMTWNKLQH---TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2152 GklIrs-L~gh~vssLSfSpDG~IlVwdssdG---sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
+...+. +.+......+|||||+.+++....+ .|.+|++.+....... .........|+|||++|+.++.++.
T Consensus 318 g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt--~~~~~~~p~~spdg~~l~~~~~~~g-- 393 (427)
T PRK02889 318 GAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT--DTTRDESPSFAPNGRYILYATQQGG-- 393 (427)
T ss_pred CceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc--CCCCccCceECCCCCEEEEEEecCC--
Confidence 543222 2222344578999999988876543 5888888754443322 2234567899999999998764332
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
...+.+.++ ++.....+. .+.+.+...+|+|-
T Consensus 394 ------------------------------------~~~l~~~~~-~g~~~~~l~-~~~g~~~~p~wsp~ 425 (427)
T PRK02889 394 ------------------------------------RSVLAAVSS-DGRIKQRLS-VQGGDVREPSWGPF 425 (427)
T ss_pred ------------------------------------CEEEEEEEC-CCCceEEee-cCCCCCCCCccCCC
Confidence 234666666 344445554 45566777788763
No 208
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.11 E-value=6.8e-09 Score=134.59 Aligned_cols=250 Identities=10% Similarity=0.017 Sum_probs=167.5
Q ss_pred eeEEEEEcCCCC-EEEEEEcCCcEEEEecCCccc--ce----ecccCCCCeEEEEecCCC--CEEEEEeCCCceEEEecc
Q 000085 1998 SSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKT--LE----TASGHCAPVTCLALSSDS--NFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 1998 Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkl--l~----tL~GHt~~VtcLAfSPDG--~~LaSGS~DGTVrVWDl~ 2068 (2342)
.+.|++|+|... ++++|+.+|.|.+||+..+.. .. ....|.++|+.+.|..+- .-++|+|.||.|+.|+++
T Consensus 244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~ 323 (555)
T KOG1587|consen 244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTD 323 (555)
T ss_pred ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecc
Confidence 467799998655 899999999999999987654 22 234589999999997654 459999999999999877
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIW 2147 (2342)
.-....... .+- .......-..-...++++.|.+. -..++.|+.+|.|..-
T Consensus 324 ~l~~P~e~~-----------------~~~-----------~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 324 MLSLPVEGL-----------------LLE-----------SKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred ccccchhhc-----------------ccc-----------cccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence 632211100 000 00000000112346788999874 5678899999998873
Q ss_pred EC---CCCe-E----EEEEec--CCcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCE
Q 000085 2148 SI---RRGR-L----IRRLVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2148 DL---rTGk-l----IrsL~g--h~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~ 2216 (2342)
+- +.+. . +..+.. ..++.+.++|=+.-++....+-.+++|... ..........+...|++++|||..--
T Consensus 376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred eccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCce
Confidence 32 2222 1 111111 236788888888766666668889999865 21111111226667999999998765
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC--CeEEEEEecCCCCCeEEEEE
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT--LKVFHVLKLGEGQDITALAL 2294 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T--gk~L~tL~lgHs~~ItsLaf 2294 (2342)
++.... .||.|.|||+.. ..++.+.. -+....+.+.|
T Consensus 456 vF~~~d----------------------------------------~~G~l~iWDLl~~~~~Pv~s~~-~~~~~l~~~~~ 494 (555)
T KOG1587|consen 456 VFATVD----------------------------------------GDGNLDIWDLLQDDEEPVLSQK-VCSPALTRVRW 494 (555)
T ss_pred EEEEEc----------------------------------------CCCceehhhhhccccCCccccc-ccccccceeec
Confidence 554431 278899999854 45555555 34667888899
Q ss_pred ecCCCEEEEEeCCCcEEEEeCC
Q 000085 2295 NKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2295 SPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+++|+.|++|...|.+.+|++.
T Consensus 495 s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 495 SPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred CCCCcEEEEecCCCcEEEEEcC
Confidence 9999999999999999999964
No 209
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.10 E-value=1.1e-08 Score=128.57 Aligned_cols=278 Identities=14% Similarity=0.132 Sum_probs=161.7
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe-CCCceEEEeccCCccccccccC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS-QDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS-~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
.+.++|||+++.+.+.||.|.++|+.+++.+.++....+ -.++++|+||++++++. .++++.|+|..+.+.+......
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 477999999988889999999999999999988876554 57899999999998765 6899999999987766554111
Q ss_pred ------CCCCCccccccCCCCCceeecCCCcccccc--C--Cc-eEEecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEE
Q 000085 2080 ------PSSGMGTPGNSIGSSTPANASADKSRRRRI--E--GP-IHVLRGHHREILCCCVSSDLGVVVSC-SDSSDLLLH 2147 (2342)
Q Consensus 2080 ------~~~~V~svs~SpDG~~Las~s~D~s~~~~i--~--~~-l~~L~GHs~~Vt~VafSPDg~lLaSG-S~DGtIrIW 2147 (2342)
....+..+..++....++....+.-..|-+ . .. ...............|+|++++++.+ ..+..|-++
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~vi 199 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVI 199 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEE
Confidence 223445566667776555555543333322 1 12 22222334456788999999987654 567799999
Q ss_pred ECCCCeEEEEEec----CCcEEEEE-ecCCcEEEEEeC-----------CCeEEEEEeC-CceeeeecCCCCCCeEEEEE
Q 000085 2148 SIRRGRLIRRLVG----VDAHAVSL-SSEGVIMTWNKL-----------QHTLSSFTLN-GVLVARAKLPLSGSIGCMEI 2210 (2342)
Q Consensus 2148 DLrTGklIrsL~g----h~vssLSf-SpDG~IlVwdss-----------dGsI~I~dln-G~~L~s~~~~Hs~~ItsLaf 2210 (2342)
|..+++.+..+.. |......+ ++..- .+|... ...+.+++.. .+.+..... .... .-+..
T Consensus 200 D~~~~k~v~~i~~g~~p~~~~~~~~php~~g-~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~-~G~g-lFi~t 276 (369)
T PF02239_consen 200 DTKTGKLVALIDTGKKPHPGPGANFPHPGFG-PVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT-QGGG-LFIKT 276 (369)
T ss_dssp ETTTTEEEEEEE-SSSBEETTEEEEEETTTE-EEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE--SSSS---EE-
T ss_pred eeccceEEEEeeccccccccccccccCCCcc-eEEeeccccceecccccCCccccchhhcCeEEEEEEC-CCCc-ceeec
Confidence 9999988876643 11111111 22211 122211 1111222222 122222221 2223 66777
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeE
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDIT 2290 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~It 2290 (2342)
+|+++++.+...-+. ..++|.|+|..+.+.+.++..+-...+.
T Consensus 277 hP~s~~vwvd~~~~~-------------------------------------~~~~v~viD~~tl~~~~~i~~~~~~~~~ 319 (369)
T PF02239_consen 277 HPDSRYVWVDTFLNP-------------------------------------DADTVQVIDKKTLKVVKTITPGPGKRVV 319 (369)
T ss_dssp -TT-SEEEEE-TT-S-------------------------------------SHT-EEEEECCGTEEEE-HHHHHT--EE
T ss_pred CCCCccEEeeccCCC-------------------------------------CCceEEEEECcCcceeEEEeccCCCcEe
Confidence 888888886631111 1468999999999988887644445699
Q ss_pred EEEEecCCCEEEEEeC--CCcEEEEeCCCCC
Q 000085 2291 ALALNKDNTNLLVSTA--DKQLIVFTDPALS 2319 (2342)
Q Consensus 2291 sLafSPDG~~LaSGSs--DGsIrVWDi~sLs 2319 (2342)
.+.|++||+++..+.. +|.|.|||..++.
T Consensus 320 h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 320 HMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp EEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 9999999998776644 3469999988775
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.10 E-value=6.4e-09 Score=137.26 Aligned_cols=247 Identities=15% Similarity=0.132 Sum_probs=161.6
Q ss_pred EEEc-CCCCEEEEEEcCCcEEEEecCCc-------ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc
Q 000085 2002 VSIT-HDKEIITGGHVDGSIKLLTSDGA-------KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 2002 VafS-pDGklLASGS~DGsIrVWDl~tg-------kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
++.+ +++.++++|+.||+|++|+...- +...++.--...|.++...+.++.+|.++.||.|++.+++.....
T Consensus 1054 ~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~ 1133 (1431)
T KOG1240|consen 1054 LAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVS 1133 (1431)
T ss_pred eeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccc
Confidence 4444 45589999999999999997531 222333334578999999999999999999999999998763111
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCC-EEEEEeCCCcEEEEECCC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLG-VVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~-lLaSGS~DGtIrIWDLrT 2151 (2342)
+.. +.. .+ +..+.....-|.+-+|.. ++. .++.+..-+.|..||++.
T Consensus 1134 ~~~--------------------~~~----~r-------i~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1134 KRV--------------------ATQ----VR-------IPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred cce--------------------eee----ee-------cccccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence 000 000 00 000111111222333332 233 677888889999999998
Q ss_pred CeEEEEEec---CC-cEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCC---CEEEEEeCC
Q 000085 2152 GRLIRRLVG---VD-AHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDG---HSALIGVNS 2223 (2342)
Q Consensus 2152 GklIrsL~g---h~-vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDG---k~LaSGS~D 2223 (2342)
...+.+++. |+ ++.+++++.+.+++.+...|.+.+||+. +.++.+...++..+|..+..+|-. ...++++..
T Consensus 1183 ~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1183 RHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred hhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc
Confidence 776666553 33 7899999999999999999999999998 555666666777888888887743 355555421
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC------------------C
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG------------------E 2285 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg------------------H 2285 (2342)
+ .+.|.+|++.+|.+-.++..+ +
T Consensus 1263 ~---------------------------------------~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~ 1303 (1431)
T KOG1240|consen 1263 S---------------------------------------NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPD 1303 (1431)
T ss_pred C---------------------------------------CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCC
Confidence 1 234555555555444444322 1
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2286 GQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2286 s~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.-......+..-+..+++|+.|..|+.||....
T Consensus 1304 ~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1304 SLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cccceeeecccCCceeeecCCccceeeccCCCc
Confidence 111223334445568999999999999996543
No 211
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=1e-09 Score=134.66 Aligned_cols=133 Identities=16% Similarity=0.218 Sum_probs=106.7
Q ss_pred cceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec-ccCCCCeEEEEecC--CCCEEEEEeCCCceE
Q 000085 1987 RALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA-SGHCAPVTCLALSS--DSNFLVTGSQDTTIL 2063 (2342)
Q Consensus 1987 ~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL-~GHt~~VtcLAfSP--DG~~LaSGS~DGTVr 2063 (2342)
..+.+|. .+|+|+.|+.+|.+|++|+.|-.+.|||.-..+++..+ .||+..|.|+.|-| +.+.++||+.|..|+
T Consensus 44 ~eL~GH~---GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 44 AELTGHT---GCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhcccc---ceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3444444 56777999999999999999999999999887877765 58999999999998 467899999999999
Q ss_pred EEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCC
Q 000085 2064 LWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSS 2142 (2342)
Q Consensus 2064 VWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DG 2142 (2342)
++|+...+... .| -....+...+..|...|..++..|++ ..+.+++.||
T Consensus 121 lfdl~~~~~~~--------------------------~d----~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG 170 (758)
T KOG1310|consen 121 LFDLDSSKEGG--------------------------MD----HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG 170 (758)
T ss_pred EEecccccccc--------------------------cc----cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc
Confidence 99998632110 00 01123445567899999999999988 7889999999
Q ss_pred cEEEEECCCC
Q 000085 2143 DLLLHSIRRG 2152 (2342)
Q Consensus 2143 tIrIWDLrTG 2152 (2342)
+|+-+|++..
T Consensus 171 tirQyDiREp 180 (758)
T KOG1310|consen 171 TIRQYDIREP 180 (758)
T ss_pred ceeeecccCC
Confidence 9999999753
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=6.9e-09 Score=123.30 Aligned_cols=268 Identities=15% Similarity=0.114 Sum_probs=167.3
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc-CCCCeEEEEecCCCC-EEEEEeCCCceEEEeccCCccccccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG-HCAPVTCLALSSDSN-FLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G-Ht~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
..++|++.-.-++++..|-+|++|+-.+ ++...++. ....|+|++|-|.+. .|+.|+. +-|.+|...........
T Consensus 102 r~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~- 178 (445)
T KOG2139|consen 102 RGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRN- 178 (445)
T ss_pred eeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccc-
Confidence 4488998777788999999999999776 44444442 346799999999754 5555554 56889987652111000
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DGtIrIWDLrTGklIr 2156 (2342)
+... + .....+....|| ..|+++.|.+||..+++++- |..|.|||..+|..+.
T Consensus 179 ------~~~~------------s-------~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p 232 (445)
T KOG2139|consen 179 ------IRMM------------S-------THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP 232 (445)
T ss_pred ------cccc------------c-------ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc
Confidence 0000 0 001123344567 78999999999999999884 6789999999988765
Q ss_pred EE--ecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccc
Q 000085 2157 RL--VGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNI 2234 (2342)
Q Consensus 2157 sL--~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~L 2234 (2342)
-. ...+...+.|||||.+++...-++..++|..+...-...-.-..+.|...+|+|+|.+|+.... ++ ..+
T Consensus 233 L~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gs------p~l 305 (445)
T KOG2139|consen 233 LIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GS------PRL 305 (445)
T ss_pred ccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CC------ceE
Confidence 44 3345789999999999999999999999966532222211224569999999999999886652 22 111
Q ss_pred cccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCC------
Q 000085 2235 QGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK------ 2308 (2342)
Q Consensus 2235 w~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG------ 2308 (2342)
+. +.|......... ....-...-+-|+..-....- ..-..+++.+++|.|.|.+|++.-..+
T Consensus 306 ys--------l~f~~~~~~~~~---~~~~k~~lliaDL~e~ti~ag-~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~ 373 (445)
T KOG2139|consen 306 YS--------LTFDGEDSVFLR---PQSIKRVLLIADLQEVTICAG-QRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC 373 (445)
T ss_pred EE--------EeecCCCccccC---cccceeeeeeccchhhhhhcC-cccccCccceeeECCCCCEEEEEEcCCchhhhh
Confidence 22 222211111100 000012233334321110000 001356789999999999999875433
Q ss_pred --cEEEEeC
Q 000085 2309 --QLIVFTD 2315 (2342)
Q Consensus 2309 --sIrVWDi 2315 (2342)
.|.+||.
T Consensus 374 k~~i~~fdt 382 (445)
T KOG2139|consen 374 KLHISRFDT 382 (445)
T ss_pred hhhhhhhcc
Confidence 3566764
No 213
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.07 E-value=1.4e-09 Score=133.11 Aligned_cols=261 Identities=16% Similarity=0.114 Sum_probs=158.5
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC--CCCCCcccccc----CCCCCceeecCCCccc--c
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE--PSSGMGTPGNS----IGSSTPANASADKSRR--R 2107 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~--~~~~V~svs~S----pDG~~Las~s~D~s~~--~ 2107 (2342)
.|...|+|+.|+.+...+.+++.+..+.-||+.+.......... .+....-...+ .....++.++.|+... -
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 57788899999987766666555555555555543211110000 00000000000 1122344444444321 1
Q ss_pred ccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe--cCCcEEEEEecCCcEEEEEeCCCeEE
Q 000085 2108 RIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV--GVDAHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2108 ~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~--gh~vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
...+....+..|.+.|.|-.|+|||.-++|++.||.|++|. ++|.+..++. +..+++++|.|+..-+++.. .+.+.
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~ 169 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHIS 169 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEE
Confidence 22344456678999999999999999999999999999998 4665544443 24589999999988777764 34444
Q ss_pred EEEe--CCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCC
Q 000085 2186 SFTL--NGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2186 I~dl--nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
+-.+ +.+.+.- ..|++-|.++.|++....+++|+.|+. -++|+-.+........+-....+.+. ..
T Consensus 170 IKpL~~n~k~i~W--kAHDGiiL~~~W~~~s~lI~sgGED~k------fKvWD~~G~~Lf~S~~~ey~ITSva~----np 237 (737)
T KOG1524|consen 170 IKPLAANSKIIRW--RAHDGLVLSLSWSTQSNIIASGGEDFR------FKIWDAQGANLFTSAAEEYAITSVAF----NP 237 (737)
T ss_pred EeecccccceeEE--eccCcEEEEeecCccccceeecCCcee------EEeecccCcccccCChhccceeeeee----cc
Confidence 4333 3434332 239999999999999999999998877 34455433221110000011111111 12
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
|.-..+|..++.+ +.....+.|..++||+||+.+++|+..|.+.+=.
T Consensus 238 d~~~~v~S~nt~R----~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 238 EKDYLLWSYNTAR----FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ccceeeeeeeeee----ecCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 4445566665544 3324567899999999999999999999887644
No 214
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=2.8e-08 Score=127.75 Aligned_cols=179 Identities=14% Similarity=0.031 Sum_probs=123.0
Q ss_pred eEEEEEcCCCCEEEEEEc---CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCCc--eEEEeccCCcc
Q 000085 1999 SAVVSITHDKEIITGGHV---DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDTT--ILLWRIHRAFT 2072 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~---DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DGT--VrVWDl~tg~~ 2072 (2342)
+...+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.++. |.+||+.++.
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~- 281 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT- 281 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc-
Confidence 456899999998887663 468999999887653 4556677788999999998765 6666766 5555665531
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CC--cEEEEEC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SS--DLLLHSI 2149 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DG--tIrIWDL 2149 (2342)
...+..|....+..+|+|||+.++..+. +| .|+++|+
T Consensus 282 ----------------------------------------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 282 ----------------------------------------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred ----------------------------------------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence 1123334445567899999998887664 33 6888898
Q ss_pred CCCeEEEEEec-CCcEEEEEecCCcEEEEEeCC---CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2150 RRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQ---HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2150 rTGklIrsL~g-h~vssLSfSpDG~IlVwdssd---GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.++...+.... .......|+|||+.+++...+ ..+.++++.+....... ....+..+.|+|||+.|+..+
T Consensus 322 ~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt--~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 322 DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT--SGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc--CCCCCCCCeECCCCCEEEEEE
Confidence 77655433222 224557899999988876543 25777777654433222 333577889999999998765
No 215
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=5.6e-09 Score=135.74 Aligned_cols=259 Identities=15% Similarity=0.181 Sum_probs=173.7
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC--CCCEEEEEEcCCcEEEEec-CCc----
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH--DKEIITGGHVDGSIKLLTS-DGA---- 2028 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp--DGklLASGS~DGsIrVWDl-~tg---- 2028 (2342)
-...++++.+...|++|+-..+.....+. .+......|+.+.+-. |..++.+|+.||.||||+- .++
T Consensus 1075 f~p~i~~ad~r~~i~vwd~e~~~~l~~F~------n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~ 1148 (1387)
T KOG1517|consen 1075 FEPQIAAADDRERIRVWDWEKGRLLNGFD------NGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP 1148 (1387)
T ss_pred CCceeEEcCCcceEEEEecccCceecccc------CCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCc
Confidence 34556666656789999865533222211 1112223344455544 3348999999999999963 222
Q ss_pred cccee---cccC----CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccC-CCCCceeec
Q 000085 2029 KTLET---ASGH----CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI-GSSTPANAS 2100 (2342)
Q Consensus 2029 kll~t---L~GH----t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp-DG~~Las~s 2100 (2342)
+.+.. +.++ .+.=.-+.|.....+|++++.-..|+|||.......+....+....+++++.+. .|+.+++|.
T Consensus 1149 eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf 1228 (1387)
T KOG1517|consen 1149 ELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF 1228 (1387)
T ss_pred eeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee
Confidence 22221 2221 121134567776667777777899999999987776666555666666666554 467889999
Q ss_pred CCCccc-ccc-----CCceEEecCCCCC--eEEEEEecCCC-EEEEEeCCCcEEEEECCCCeEE--EEEe-----cCCcE
Q 000085 2101 ADKSRR-RRI-----EGPIHVLRGHHRE--ILCCCVSSDLG-VVVSCSDSSDLLLHSIRRGRLI--RRLV-----GVDAH 2164 (2342)
Q Consensus 2101 ~D~s~~-~~i-----~~~l~~L~GHs~~--Vt~VafSPDg~-lLaSGS~DGtIrIWDLrTGklI--rsL~-----gh~vs 2164 (2342)
.|+..+ ++. ...+...+.|... |..+.+.+.|- .+++|+.||.|++||++..... -++. |...+
T Consensus 1229 aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lT 1308 (1387)
T KOG1517|consen 1229 ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALT 1308 (1387)
T ss_pred cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccce
Confidence 998755 222 2357788889887 99999988654 4999999999999999874221 1222 22367
Q ss_pred EEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC------CCCCeEEEEEccCCCEEEEEe
Q 000085 2165 AVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP------LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2165 sLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~------Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
++.++++..+++.+.. +.|.+|++.|..+...... ..+.+.|++|+|---.+++|+
T Consensus 1309 al~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1309 ALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred eeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhcc
Confidence 8889999999998876 8899999988766543321 456789999999888888775
No 216
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=9e-09 Score=127.63 Aligned_cols=270 Identities=11% Similarity=0.084 Sum_probs=191.9
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCC--CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHC--APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt--~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
++.+.++|||+ ++|+|..--.|++||+..-.+ .+..|. ..|.-.-++.|-..++---.|.+|-+..-... .-.
T Consensus 54 st~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~-hy~- 129 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR-HYR- 129 (703)
T ss_pred cceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhcCe-eee-
Confidence 45688999999 577888999999999876433 344454 45777777777777777778888865433221 000
Q ss_pred cccCCCCCCcccccc-CCCCCceeecCCCcccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2076 GTIEPSSGMGTPGNS-IGSSTPANASADKSRRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~S-pDG~~Las~s~D~s~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
...+.....+.++ +....+.++....+.+.++ +..+..+....+.+++|.+++...+|++|+.||.|-.||.++.
T Consensus 130 --~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 130 --TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred --eecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 0111111222222 2233444555555544443 3445666667789999999999999999999999999999988
Q ss_pred eEEEEEecC-------------CcEEEEEecCCcEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccC--CCE
Q 000085 2153 RLIRRLVGV-------------DAHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLD--GHS 2216 (2342)
Q Consensus 2153 klIrsL~gh-------------~vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPD--Gk~ 2216 (2342)
..+.++... .++.+.|+.||--+..+..+|.+.+|++.. .++........-+|..+.|.+. +..
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~ 287 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK 287 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence 777766431 268999999999999999999999999974 3444333334567888888665 333
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
+++. ....++|||-.+|+....+. -...++.+|+-|
T Consensus 288 v~S~------------------------------------------Dk~~~kiWd~~~Gk~~asiE--pt~~lND~C~~p 323 (703)
T KOG2321|consen 288 VVSM------------------------------------------DKRILKIWDECTGKPMASIE--PTSDLNDFCFVP 323 (703)
T ss_pred EEec------------------------------------------chHHhhhcccccCCceeecc--ccCCcCceeeec
Confidence 4422 13568999999999988887 344599999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC
Q 000085 2297 DNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2297 DG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
++.+++++-.++.+..|-+|.+
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CCceEEEecCCCcceeEEcccc
Confidence 9999999999999999988766
No 217
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=8.8e-09 Score=133.99 Aligned_cols=249 Identities=14% Similarity=0.157 Sum_probs=169.1
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCC---CCeEEEEecC--CCCEEEEEeCCCceEEEeccCCcccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC---APVTCLALSS--DSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt---~~VtcLAfSP--DG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
..+.|+|-...++++...-.|+|||.+.++.+..+..+. ..|+.+.+-. |...+++||.||.|+||+-......
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~- 1146 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK- 1146 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC-
Confidence 347788888888888777789999999999887776543 5688888865 4578999999999999975432100
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL 2154 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl 2154 (2342)
...++++ +... ...+.+-.+.=.-+.|.....+++++|.-..|+|||..+..+
T Consensus 1147 ------------------~~eLVTa-w~~L--------s~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~ 1199 (1387)
T KOG1517|consen 1147 ------------------KPELVTA-WSSL--------SDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV 1199 (1387)
T ss_pred ------------------CceeEEe-eccc--------cccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee
Confidence 0011111 1100 000111111113456776666677777688999999999888
Q ss_pred EEEEecCC---cEEEEEe-cCCcEEEEEeCCCeEEEEEeCCce---eeeecCCCCCC--eEEEEEccCCCE-EEEEeCCC
Q 000085 2155 IRRLVGVD---AHAVSLS-SEGVIMTWNKLQHTLSSFTLNGVL---VARAKLPLSGS--IGCMEISLDGHS-ALIGVNSS 2224 (2342)
Q Consensus 2155 IrsL~gh~---vssLSfS-pDG~IlVwdssdGsI~I~dlnG~~---L~s~~~~Hs~~--ItsLafSPDGk~-LaSGS~DG 2224 (2342)
++.+.... ++.++.+ ..|.+++.+..||.+++|+..-.. .......|+.. |..+.+.+.|-- |++|+.
T Consensus 1200 ~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~-- 1277 (1387)
T KOG1517|consen 1200 VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ-- 1277 (1387)
T ss_pred EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc--
Confidence 88776543 4444443 347999999999999999975321 22223347776 999999887655 777752
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec-CC---CCCeEEEEEecCCCE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL-GE---GQDITALALNKDNTN 2300 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l-gH---s~~ItsLafSPDG~~ 2300 (2342)
||.|++||++.......+.. .| ++..+++..|++...
T Consensus 1278 ---------------------------------------~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1278 ---------------------------------------DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred ---------------------------------------CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCe
Confidence 67899999987322221111 22 335999999999999
Q ss_pred EEEEeCCCcEEEEeCCCC
Q 000085 2301 LLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2301 LaSGSsDGsIrVWDi~sL 2318 (2342)
+++|+. +.|.||+..+-
T Consensus 1319 iAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1319 IASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred eeecCc-ceEEEEecChh
Confidence 999998 99999996554
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.03 E-value=1.6e-08 Score=124.95 Aligned_cols=196 Identities=11% Similarity=0.076 Sum_probs=136.8
Q ss_pred cCCCCEEEEEEcCCcEEEEecCCcccceec----ccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2005 THDKEIITGGHVDGSIKLLTSDGAKTLETA----SGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2005 SpDGklLASGS~DGsIrVWDl~tgkll~tL----~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
.+.+--+..|-..|.|.+.|....+..+.+ .-.+..|+|+.|-|.+ ..++.+-.+|.+.++|......
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~------- 254 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG------- 254 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc-------
Confidence 456667788888999999987652221111 1134789999999854 4555667899999998743110
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
.........+++..++....-... ...++..+.--.+.|+..+|+|||+++++.|.||.++|+|..+.+++..++
T Consensus 255 --~t~p~~~~~k~~~~f~i~t~ksk~---~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk 329 (636)
T KOG2394|consen 255 --ATAPSYQALKDGDQFAILTSKSKK---TRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK 329 (636)
T ss_pred --CCCCcccccCCCCeeEEeeeeccc---cCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH
Confidence 000111122344444333221111 113444444445689999999999999999999999999998877665554
Q ss_pred c--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEcc
Q 000085 2160 G--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISL 2212 (2342)
Q Consensus 2160 g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP 2212 (2342)
. .+..++||||||++++.+..|.-+.+|++..+.+...-.+|..+|+.|+|.|
T Consensus 330 SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 330 SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 3 2468999999999999999999999999987666665667999999999997
No 219
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=2.5e-08 Score=128.00 Aligned_cols=213 Identities=15% Similarity=0.124 Sum_probs=138.0
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC---CceEEEeccCCccccccccCCCCCCccccccCCCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD---TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D---GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~ 2094 (2342)
..|.++|.+ |...+.+..|...|.+.+|+|||+.|+..+.+ ..|.+||+.++...
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--------------------- 233 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--------------------- 233 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE---------------------
Confidence 457777774 44555566788899999999999999887743 35899998775211
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEE--CCCCeEEEEEecCC--cEEEEEe
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSDLLLHS--IRRGRLIRRLVGVD--AHAVSLS 2169 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGtIrIWD--LrTGklIrsL~gh~--vssLSfS 2169 (2342)
.+....+.+.+.+|+|||+.++ +.+.+|...||. +.++. .+.+..+. ....+|+
T Consensus 234 --------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS 292 (427)
T PRK02889 234 --------------------VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS 292 (427)
T ss_pred --------------------EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc
Confidence 1112223456789999998876 567788766654 44444 44444332 3567899
Q ss_pred cCCcEEEEEeC-CCeEEEEEe--CCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccc
Q 000085 2170 SEGVIMTWNKL-QHTLSSFTL--NGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTED 2246 (2342)
Q Consensus 2170 pDG~IlVwdss-dGsI~I~dl--nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ia 2246 (2342)
|||+.+++... .+...+|.+ .+........ +........|+|||++++..+.++.
T Consensus 293 pDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~-~g~~~~~~~~SpDG~~Ia~~s~~~g--------------------- 350 (427)
T PRK02889 293 PDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF-TGSYNTSPRISPDGKLLAYISRVGG--------------------- 350 (427)
T ss_pred CCCCEEEEEecCCCCcEEEEEECCCCceEEEec-CCCCcCceEECCCCCEEEEEEccCC---------------------
Confidence 99998776543 355555554 4433332221 2233456789999999987653211
Q ss_pred cccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeC
Q 000085 2247 FDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK---QLIVFTD 2315 (2342)
Q Consensus 2247 Fspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG---sIrVWDi 2315 (2342)
+..|.+||+.+++... +. .........|+|||++|+.++.++ .+.+.+.
T Consensus 351 -----------------~~~I~v~d~~~g~~~~-lt--~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 351 -----------------AFKLYVQDLATGQVTA-LT--DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred -----------------cEEEEEEECCCCCeEE-cc--CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 2369999998887543 33 223456789999999998877554 2444454
No 220
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.99 E-value=2.1e-08 Score=116.67 Aligned_cols=235 Identities=14% Similarity=0.173 Sum_probs=156.7
Q ss_pred EEEEEE----cCCcEEEEecC--Ccccceec-ccCCCCeEEEEecCCCC-----EEEEEeCCCceEEEeccCCccccccc
Q 000085 2010 IITGGH----VDGSIKLLTSD--GAKTLETA-SGHCAPVTCLALSSDSN-----FLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2010 lLASGS----~DGsIrVWDl~--tgkll~tL-~GHt~~VtcLAfSPDG~-----~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
+||.|+ ..+.|.|..++ +++.+..- ..|..+++.+.|.|+.. +|+|++ ..+++|.+.........
T Consensus 61 rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~- 137 (364)
T KOG0290|consen 61 RLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL- 137 (364)
T ss_pred eEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceeh-
Confidence 777776 35667776554 44443221 45999999999999863 566543 57999998753111000
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeE--
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRGRL-- 2154 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTGkl-- 2154 (2342)
. ++... ..-..+..++++..|+. +.+++.++|-|-++.|||+.+|..
T Consensus 138 ----~--------------~~L~~------------~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~ 187 (364)
T KOG0290|consen 138 ----Q--------------SVLNN------------NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT 187 (364)
T ss_pred ----h--------------hhhcc------------CcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc
Confidence 0 00000 01133567899999985 678999999999999999998732
Q ss_pred -EEEEecC--CcEEEEEecCCc-EEEEEeCCCeEEEEEeCCceeeeecC--C-CCCCeEEEEEccCC-CEEEEEeCCCCC
Q 000085 2155 -IRRLVGV--DAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVLVARAKL--P-LSGSIGCMEISLDG-HSALIGVNSSST 2226 (2342)
Q Consensus 2155 -IrsL~gh--~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~L~s~~~--~-Hs~~ItsLafSPDG-k~LaSGS~DGs~ 2226 (2342)
...+-.| ++..++|+..|. +++.-+.+|.+++|++....-.+... + ...+...++|++.. +++++-
T Consensus 188 vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf------ 261 (364)
T KOG0290|consen 188 VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATF------ 261 (364)
T ss_pred eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhh------
Confidence 3445455 489999999775 44555789999999986422111111 1 13455566666533 233321
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC-CeEEEEEecCCCCCeEEEEEecC-CCEEEEE
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT-LKVFHVLKLGEGQDITALALNKD-NTNLLVS 2304 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T-gk~L~tL~lgHs~~ItsLafSPD-G~~LaSG 2304 (2342)
+.....|.|.|++. ..++..+. +|.+.|++++|.|. ..+|+++
T Consensus 262 ----------------------------------~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 262 ----------------------------------AMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred ----------------------------------hcCCceEEEEEecCCCcceehhh-cCcccccceEecCCCCceeeec
Confidence 11245788999876 45677787 99999999999995 4789999
Q ss_pred eCCCcEEEEeCCCC
Q 000085 2305 TADKQLIVFTDPAL 2318 (2342)
Q Consensus 2305 SsDGsIrVWDi~sL 2318 (2342)
|.|..+.+||++..
T Consensus 307 GDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 307 GDDCQALIWDLQQM 320 (364)
T ss_pred CCcceEEEEecccc
Confidence 99999999996554
No 221
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.98 E-value=1.7e-08 Score=130.86 Aligned_cols=224 Identities=13% Similarity=0.126 Sum_probs=153.3
Q ss_pred CCcEEEEecCCcccceecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2017 DGSIKLLTSDGAKTLETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
++.+.||++...........-...|+|++|+| +..+++.|+.+|.|.+||+..+.... ..
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---------~s---------- 281 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---------PS---------- 281 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---------Cc----------
Confidence 34789999987633333333467899999999 46788889999999999998853210 00
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCCCeE------EEEEe--------
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL--GVVVSCSDSSDLLLHSIRRGRL------IRRLV-------- 2159 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg--~lLaSGS~DGtIrIWDLrTGkl------IrsL~-------- 2159 (2342)
..-.....|..+++.+.|..+- .-++++|.||.|..|+++.-.. .....
T Consensus 282 ---------------~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~ 346 (555)
T KOG1587|consen 282 ---------------GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSK 346 (555)
T ss_pred ---------------ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccc
Confidence 0011234689999999997654 4499999999999998864322 11111
Q ss_pred cCCcEEEEEecCC-cEEEEEeCCCeEEEEEeCCceeee--------ecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCC
Q 000085 2160 GVDAHAVSLSSEG-VIMTWNKLQHTLSSFTLNGVLVAR--------AKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGS 2230 (2342)
Q Consensus 2160 gh~vssLSfSpDG-~IlVwdssdGsI~I~dlnG~~L~s--------~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i 2230 (2342)
.+.++.+.|.+.. ..++.+...|.|..-.-.|..... ....|.+.|+++.++|=+..++..+
T Consensus 347 ~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~--------- 417 (555)
T KOG1587|consen 347 AVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV--------- 417 (555)
T ss_pred ccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee---------
Confidence 1235677776543 456677777877664433322111 2233899999999999776665443
Q ss_pred cccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC-CCeEEEEEecCCCCCeEEEEEecCCC-EEEEEeCCC
Q 000085 2231 YDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH-TLKVFHVLKLGEGQDITALALNKDNT-NLLVSTADK 2308 (2342)
Q Consensus 2231 ~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~-Tgk~L~tL~lgHs~~ItsLafSPDG~-~LaSGSsDG 2308 (2342)
.|.+++||... ...++..+. .+...|++++|||... .|+++..||
T Consensus 418 --------------------------------gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 418 --------------------------------GDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred --------------------------------ccceeEeccccCCCCcchhhh-hccceeeeeEEcCcCceEEEEEcCCC
Confidence 15678999887 666666666 5667799999999874 566778899
Q ss_pred cEEEEeCC
Q 000085 2309 QLIVFTDP 2316 (2342)
Q Consensus 2309 sIrVWDi~ 2316 (2342)
.|.+||+.
T Consensus 465 ~l~iWDLl 472 (555)
T KOG1587|consen 465 NLDIWDLL 472 (555)
T ss_pred ceehhhhh
Confidence 99999953
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1.5e-07 Score=112.36 Aligned_cols=209 Identities=16% Similarity=0.201 Sum_probs=140.1
Q ss_pred EecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCC----ccc-----
Q 000085 1961 ASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDG----AKT----- 2030 (2342)
Q Consensus 1961 aSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~t----gkl----- 2030 (2342)
+.+..|.+||+|+... ..+..+ .+...+.++|++|-|-+. -|+.|+.. -|.+|..+. ++.
T Consensus 114 ava~nddvVriy~kss-------t~pt~L--ks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s 183 (445)
T KOG2139|consen 114 AVATNDDVVRIYDKSS-------TCPTKL--KSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMS 183 (445)
T ss_pred hhhccCcEEEEeccCC-------CCCcee--cchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccccccc
Confidence 4566788999998543 122222 122345688999999765 77777754 488997652 111
Q ss_pred -----ceecccCCCCeEEEEecCCCCEEEEEeC-CCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc
Q 000085 2031 -----LETASGHCAPVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS 2104 (2342)
Q Consensus 2031 -----l~tL~GHt~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s 2104 (2342)
+..-.|| .+|+++.|.+||..++++|. |..|+|||..++..+.-
T Consensus 184 ~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL----------------------------- 233 (445)
T KOG2139|consen 184 THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL----------------------------- 233 (445)
T ss_pred ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc-----------------------------
Confidence 1223456 68999999999999999985 57899999998643211
Q ss_pred cccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeEEEEEec-CCcEEEEEecCCcEEEEEeCCC
Q 000085 2105 RRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR-GRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQH 2182 (2342)
Q Consensus 2105 ~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT-GklIrsL~g-h~vssLSfSpDG~IlVwdssdG 2182 (2342)
. .-..+.++-+.||||++++..++-|+..++|+... ....+-.-+ ..+...+|+|+|..+++....
T Consensus 234 ---------~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg- 301 (445)
T KOG2139|consen 234 ---------I--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG- 301 (445)
T ss_pred ---------c--ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC-
Confidence 1 12245688899999999999999999999996543 333333322 247788999999998887543
Q ss_pred eEEEEEeC--Cceee--------ee----c-------CC---CCCCeEEEEEccCCCEEEEEe
Q 000085 2183 TLSSFTLN--GVLVA--------RA----K-------LP---LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2183 sI~I~dln--G~~L~--------s~----~-------~~---Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.-.+|.+. ++... .. . .+ ..+.+.+++|.|.|.++++.-
T Consensus 302 sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 302 SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 23344432 21100 00 0 00 356889999999999999764
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.97 E-value=1e-09 Score=133.33 Aligned_cols=225 Identities=13% Similarity=0.164 Sum_probs=182.4
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~ 2081 (2342)
+.++.+|+.++.|+.-|.|-.+|+.++++...+.- ...|..+.|-.+.++++.+ ....+.|||-..
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G------------ 200 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNNG------------ 200 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCCC------------
Confidence 78899999999999999999999999988776653 4568889998777776654 556778887544
Q ss_pred CCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV 2161 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh 2161 (2342)
..++.++.| ..|..+.|-|..-++++++..|.++..|+.+|+.+..+...
T Consensus 201 -----------------------------tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~ 250 (545)
T KOG1272|consen 201 -----------------------------TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG 250 (545)
T ss_pred -----------------------------cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc
Confidence 234555555 56888999999889999999999999999999998887643
Q ss_pred --CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCC
Q 000085 2162 --DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNS 2239 (2342)
Q Consensus 2162 --~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~ 2239 (2342)
....++-.|-+.++-.+...|+|.+|+.+.+......+.|.++|.++++.++|+|++|.+.
T Consensus 251 ~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----------------- 313 (545)
T KOG1272|consen 251 AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----------------- 313 (545)
T ss_pred CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc-----------------
Confidence 3567788888888888889999999999865544445569999999999999999998862
Q ss_pred CCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2240 KQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2240 ~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
|..++|||++....++++.. ..+...+++|..| +++.+....|.||..
T Consensus 314 ------------------------Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 314 ------------------------DRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred ------------------------ccceeEeeeccccccceeec--CCCcccccccccc--ceeeecCCeeeeehh
Confidence 77899999999887777763 3456788888777 777777789999984
No 224
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.95 E-value=1.7e-08 Score=117.48 Aligned_cols=152 Identities=13% Similarity=0.126 Sum_probs=112.8
Q ss_pred EEEEEcC-CCCEEEEEEcCCcEEEEecCCccc---ceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCcccc
Q 000085 2000 AVVSITH-DKEIITGGHVDGSIKLLTSDGAKT---LETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2000 t~VafSp-DGklLASGS~DGsIrVWDl~tgkl---l~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
+++.|.. |-++|.+.+-|.+..|||+++|.. ...+-.|...|..++|..++ +.++|.|.||.|+++|++......
T Consensus 154 TSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST 233 (364)
T KOG0290|consen 154 TSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST 233 (364)
T ss_pred cccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce
Confidence 3356654 446899999999999999998733 55688899999999999865 578999999999999998743222
Q ss_pred cccc--CCCCCCccccccCC-CCCceeecCCCc--cccc---cCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEE
Q 000085 2075 TGTI--EPSSGMGTPGNSIG-SSTPANASADKS--RRRR---IEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLL 2145 (2342)
Q Consensus 2075 t~~~--~~~~~V~svs~SpD-G~~Las~s~D~s--~~~~---i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIr 2145 (2342)
.... ........++++.. -+++++...+.. ...+ ...++..+++|.+.|+.++|.|. ...++||+.|..+.
T Consensus 234 IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qal 313 (364)
T KOG0290|consen 234 IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQAL 313 (364)
T ss_pred EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEE
Confidence 2211 11334455566653 345555555543 2222 25678999999999999999986 67899999999999
Q ss_pred EEECCC
Q 000085 2146 LHSIRR 2151 (2342)
Q Consensus 2146 IWDLrT 2151 (2342)
+||+.+
T Consensus 314 iWDl~q 319 (364)
T KOG0290|consen 314 IWDLQQ 319 (364)
T ss_pred EEeccc
Confidence 999965
No 225
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.95 E-value=2.5e-08 Score=115.84 Aligned_cols=267 Identities=12% Similarity=0.108 Sum_probs=164.6
Q ss_pred EEEcCCCC-EEEEEEcC-------CcEEEEecCCc---------ccceecc-cCCCCeEEEEecCCCCEEEEEeCCCceE
Q 000085 2002 VSITHDKE-IITGGHVD-------GSIKLLTSDGA---------KTLETAS-GHCAPVTCLALSSDSNFLVTGSQDTTIL 2063 (2342)
Q Consensus 2002 VafSpDGk-lLASGS~D-------GsIrVWDl~tg---------kll~tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVr 2063 (2342)
++-+|..+ +|++...+ ..+.||.+... +++..+. .|-+.|.|+.|.|++..+++-. |..|.
T Consensus 69 las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~ 147 (370)
T KOG1007|consen 69 LASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIV 147 (370)
T ss_pred hhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceE
Confidence 55566554 55555432 24678987532 2344444 4567899999999999999876 89999
Q ss_pred EEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec--CCCEEEEEeCC
Q 000085 2064 LWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS--DLGVVVSCSDS 2141 (2342)
Q Consensus 2064 VWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP--Dg~lLaSGS~D 2141 (2342)
+|++..+..+... +. ...-.+|....++-+|+| +++.+++. .|
T Consensus 148 l~~l~ess~~vae----------v~------------------------ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d 192 (370)
T KOG1007|consen 148 LWSLDESSKIVAE----------VL------------------------SSESAEMRHSFTSGAWSPHHDGNQVATT-SD 192 (370)
T ss_pred EEEcccCcchhee----------ec------------------------ccccccccceecccccCCCCccceEEEe-CC
Confidence 9999875331100 00 000122566778888988 67777655 47
Q ss_pred CcEEEEECCCCeEEEEEec---CCcEEEEEecCCc-EEEEEeCCCeEEEEEeCCcee-eeecCCCCCCeEEEEEccC-CC
Q 000085 2142 SDLLLHSIRRGRLIRRLVG---VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVLV-ARAKLPLSGSIGCMEISLD-GH 2215 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrsL~g---h~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~L-~s~~~~Hs~~ItsLafSPD-Gk 2215 (2342)
+++..||+|+..+...+.. +.+..+.|.|+.. +++.+..+|.+++|+...... .....+|...|+++.|+|. .+
T Consensus 193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq 272 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ 272 (370)
T ss_pred CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce
Confidence 8999999999877766653 3477888888875 455667789999999864322 2233349999999999995 46
Q ss_pred EEEEEeCCCCCCCCCcccccccCCCC-CCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEE
Q 000085 2216 SALIGVNSSSTNNGSYDNIQGLNSKQ-SGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALAL 2294 (2342)
Q Consensus 2216 ~LaSGS~DGs~d~~i~d~Lw~l~~~~-~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLaf 2294 (2342)
++++|+.|+.... |-...-. ...+.|..+...... .|..=++=-+..| .+.++. .|...|.+++|
T Consensus 273 LiLs~~SDs~V~L------sca~svSSE~qi~~~~dese~e~------~dseer~kpL~dg-~l~tyd-ehEDSVY~~aW 338 (370)
T KOG1007|consen 273 LILSGGSDSAVNL------SCASSVSSEQQIEFEDDESESED------EDSEERVKPLQDG-QLETYD-EHEDSVYALAW 338 (370)
T ss_pred EEEecCCCceeEE------EeccccccccccccccccccCcc------hhhHHhccccccc-cccccc-ccccceEEEee
Confidence 6677776665222 2111100 001111111000000 0000010011122 245566 79999999999
Q ss_pred ecCCCEEE-EEeCCCcEEEEeCCCC
Q 000085 2295 NKDNTNLL-VSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2295 SPDG~~La-SGSsDGsIrVWDi~sL 2318 (2342)
|.-..+++ +-+.||.+.|=.++..
T Consensus 339 SsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 339 SSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred ccCCCeeEEEeccCceEEeecCChh
Confidence 98776655 5699999999886543
No 226
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.94 E-value=4.4e-08 Score=112.97 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=111.6
Q ss_pred EEEEcCCCCEEEEEEc----------CCcEEEEecCC-cccceeccc-CCCCeEEEEecCCCCEEEE--EeCCCceEEEe
Q 000085 2001 VVSITHDKEIITGGHV----------DGSIKLLTSDG-AKTLETASG-HCAPVTCLALSSDSNFLVT--GSQDTTILLWR 2066 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~----------DGsIrVWDl~t-gkll~tL~G-Ht~~VtcLAfSPDG~~LaS--GS~DGTVrVWD 2066 (2342)
.+.|+++|++|+.-.. -+...+|.++. +.....+.- ..++|.+++|+|+|+.++. |..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 3678888875543322 23355555532 233444432 3457999999999998654 45678999999
Q ss_pred ccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC---Cc
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS---SD 2143 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D---Gt 2143 (2342)
++. . .+..+ +...++.+.|+|+|+++++|+.+ |.
T Consensus 90 ~~~-~----------------------------------------~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 90 VKG-K----------------------------------------KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGD 126 (194)
T ss_pred Ccc-c----------------------------------------EeEee--cCCCceEEEECCCCCEEEEEEccCCCcE
Confidence 863 1 12222 34567889999999999998754 67
Q ss_pred EEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeC------CCeEEEEEeCCceeeee
Q 000085 2144 LLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKL------QHTLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2144 IrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdss------dGsI~I~dlnG~~L~s~ 2197 (2342)
|.+||+++.+.+..........++|||||+.++.... +..+.+|+.+|+.+...
T Consensus 127 l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~ 186 (194)
T PF08662_consen 127 LEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKK 186 (194)
T ss_pred EEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEec
Confidence 9999999999999988777899999999999887753 46789999999776654
No 227
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=1.5e-08 Score=120.24 Aligned_cols=259 Identities=13% Similarity=0.108 Sum_probs=171.6
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC--CCCEEEEEEcCCcEEEEecCCcccc--ee
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH--DKEIITGGHVDGSIKLLTSDGAKTL--ET 2033 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp--DGklLASGS~DGsIrVWDl~tgkll--~t 2033 (2342)
..++.+.+.+.+|+|+..++.....+ ..++..+.. +.|.. ....+.+++.||+|++||+.+.... ..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f------k~~~~~~N~---vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF------KGPPATTNG---VRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee------cCCCCcccc---eEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee
Confidence 45666677779999998775554443 333444444 44544 4457889999999999999876544 34
Q ss_pred cccCC-CCeEEEEecCCCCEEEEEe----CCCceEEEeccCCcc-ccccccCCCCCCccccccCCC-CCceeecCCCccc
Q 000085 2034 ASGHC-APVTCLALSSDSNFLVTGS----QDTTILLWRIHRAFT-SRTGTIEPSSGMGTPGNSIGS-STPANASADKSRR 2106 (2342)
Q Consensus 2034 L~GHt-~~VtcLAfSPDG~~LaSGS----~DGTVrVWDl~tg~~-i~t~~~~~~~~V~svs~SpDG-~~Las~s~D~s~~ 2106 (2342)
..+|. .+-.|++....++.+++|. .|-.|.+||++..+. +......|...|+.+.|+|.. +.+++++.|+...
T Consensus 112 ~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence 45565 5778888887888888885 467899999998766 556677889999999999965 5668888887643
Q ss_pred -cccCC-----ceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEEEEecCC------------cEEEE
Q 000085 2107 -RRIEG-----PIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRGRLIRRLVGVD------------AHAVS 2167 (2342)
Q Consensus 2107 -~~i~~-----~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTGklIrsL~gh~------------vssLS 2167 (2342)
+++.+ .+.....|...|.++.|..++ +.|.+-+.+++..+|+++.+.....+.... .+.+-
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN 271 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee
Confidence 44422 234445577889999998776 568888999999999999988665554321 12222
Q ss_pred Ee-cC-Cc-EEEEEeCCCeEEEEEeC----C---ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2168 LS-SE-GV-IMTWNKLQHTLSSFTLN----G---VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2168 fS-pD-G~-IlVwdssdGsI~I~dln----G---~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
.. |. +. ..+.+...+...++-++ + ..+....-+|..-|.++.|...+..+.+|+.||.
T Consensus 272 ~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 272 EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCce
Confidence 22 22 22 22333324444444432 1 1112222226677888888878888888874333
No 228
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=8.1e-08 Score=109.55 Aligned_cols=205 Identities=15% Similarity=0.143 Sum_probs=134.2
Q ss_pred CCeEEecCCCceEEEecCCCCC----CCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce
Q 000085 1957 GKASASPASGTFLRMFKGPGGS----GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE 2032 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs----~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~ 2032 (2342)
++.+.++++ +.++-|.-..-. ....|............+-.++++.+.|..+-++.++.|+.++-||+++|+..+
T Consensus 72 d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r 150 (325)
T KOG0649|consen 72 DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR 150 (325)
T ss_pred hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE
Confidence 445555544 688887633200 111222111111112234456778888876644444479999999999999999
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
++.||++-|.|+.--.....++||+.||+++|||..+++++..+.. .+.
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~-------------------------------yk~ 199 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP-------------------------------YKN 199 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc-------------------------------ccC
Confidence 9999999999999866667899999999999999999876544310 011
Q ss_pred eEEecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2113 IHVLRGHH-REILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2113 l~~L~GHs-~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
...++.|- ..|-|++. +.+++++|+. ..+.+|+++..++...|.-. .+..+.|-.| .++.+.....+..|.++
T Consensus 200 ~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 200 PNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred hhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeec
Confidence 11223333 34667765 4677876654 58999999999888877643 3555666544 34455566788999999
Q ss_pred Cceeeeec
Q 000085 2191 GVLVARAK 2198 (2342)
Q Consensus 2191 G~~L~s~~ 2198 (2342)
|.......
T Consensus 275 Gvl~a~ip 282 (325)
T KOG0649|consen 275 GVLQANIP 282 (325)
T ss_pred cEEEEecc
Confidence 86544433
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.90 E-value=9.8e-09 Score=120.54 Aligned_cols=219 Identities=10% Similarity=0.045 Sum_probs=149.7
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEE-EeCCCceEEEeccCCccccccccCC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVT-GSQDTTILLWRIHRAFTSRTGTIEP 2080 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaS-GS~DGTVrVWDl~tg~~i~t~~~~~ 2080 (2342)
++|||+|+++|+.+.- .+.|-|..+-+..+.+.. -+.|.-+.|..|..+++. ...|+.|.+|++....-
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-------- 83 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-------- 83 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee--------
Confidence 6899999999998744 788888888776665443 456888999988877655 57889999999987321
Q ss_pred CCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEE-E
Q 000085 2081 SSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRR-L 2158 (2342)
Q Consensus 2081 ~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrs-L 2158 (2342)
...+......+.+++|||||+.+ .+..-|-.|.||.+.+.+.... .
T Consensus 84 --------------------------------~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~ 131 (447)
T KOG4497|consen 84 --------------------------------YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH 131 (447)
T ss_pred --------------------------------EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc
Confidence 12234456788999999999655 5666799999999988765433 2
Q ss_pred ecCCcEEEEEecCCcEEEEEeCCCeE---EEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccc
Q 000085 2159 VGVDAHAVSLSSEGVIMTWNKLQHTL---SSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQ 2235 (2342)
Q Consensus 2159 ~gh~vssLSfSpDG~IlVwdssdGsI---~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw 2235 (2342)
..+.+..++|.+||++.+...+.... .++.-..-.+.......+-..+.+.|+|||..+++-. ..
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd--~~---------- 199 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWD--NV---------- 199 (447)
T ss_pred cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEec--ch----------
Confidence 33557889999999988766543321 1111111111111111344667899999998887431 11
Q ss_pred ccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2236 GLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2236 ~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
-+-.|+.| ..+-++..++|+|.+++|++|+.|+.++|-+
T Consensus 200 ---------------------------Leykv~aY-------------e~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 200 ---------------------------LEYKVYAY-------------ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred ---------------------------hhheeeee-------------eeccceeEEEeccccceEEeeccchhhhhhc
Confidence 01122222 2345688899999999999999999998854
No 230
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.90 E-value=4e-08 Score=115.53 Aligned_cols=303 Identities=14% Similarity=0.103 Sum_probs=167.9
Q ss_pred eEEEEEcCCCCEEEE-EEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCE-EEEEeCCCceEEEeccCCcccccc
Q 000085 1999 SAVVSITHDKEIITG-GHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNF-LVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1999 vt~VafSpDGklLAS-GS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~-LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
+.-+-|..|..++.+ ...|+.|.+|++...+-...+....+++..++|||||+. |.+...|-.|.||.+.+.......
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~ 130 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP 130 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec
Confidence 444778888875554 567889999999877767777777889999999999955 556678999999999986543322
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccc-cc-----cCCceEEecCCCCCeEEEEEecCCCEEEEEeC--CCcEEEEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRR-RR-----IEGPIHVLRGHHREILCCCVSSDLGVVVSCSD--SSDLLLHS 2148 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~-----i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~--DGtIrIWD 2148 (2342)
.....+..++|++||++.+......-.. .. ....+..+...+-..+.+.|+|||..++.=.. +-.|+.|.
T Consensus 131 --~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe 208 (447)
T KOG4497|consen 131 --HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE 208 (447)
T ss_pred --ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee
Confidence 2334557889999999886655331111 00 01122333444455667777777776653211 11111111
Q ss_pred CCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEe-----CCceeee--ecC------------CCCCCeEEEE
Q 000085 2149 IRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTL-----NGVLVAR--AKL------------PLSGSIGCME 2209 (2342)
Q Consensus 2149 LrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dl-----nG~~L~s--~~~------------~Hs~~ItsLa 2209 (2342)
.+-++..++++|.|+++..+..|+.+++.+- -|..+.- ..- .-.-...|+.
T Consensus 209 ----------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 209 ----------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred ----------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 1234556677777777777766665544321 1110000 000 0000112333
Q ss_pred EccCCCEEEEEeCCCCC-CC-CCccccc------ccCCCC--CCccccccccccccCCCCccCCCCeEEEEECCCCeEEE
Q 000085 2210 ISLDGHSALIGVNSSST-NN-GSYDNIQ------GLNSKQ--SGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFH 2279 (2342)
Q Consensus 2210 fSPDGk~LaSGS~DGs~-d~-~i~d~Lw------~l~~~~--~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~ 2279 (2342)
|.|..--.-.+-.+... .. .....+. +..++. .+.++|+.+....... ....-+.+.+||+...+...
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTr--nd~~PnalW~Wdlq~l~l~a 356 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATR--NDKYPNALWLWDLQNLKLHA 356 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeee--cCCCCceEEEEechhhhhhh
Confidence 33321000000000000 00 0000111 111111 2333444443221111 11124579999999988766
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2280 VLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2280 tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
.+. ...+|....|.|....|+.+.....+++|...+
T Consensus 357 vLi--Qk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 357 VLI--QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred hhh--hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 655 456899999999999999999989999998544
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.90 E-value=1.2e-07 Score=112.06 Aligned_cols=229 Identities=16% Similarity=0.215 Sum_probs=153.0
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCC--eEEEEecCCCCEEEE-EeCC------CceEEEeccCCcc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAP--VTCLALSSDSNFLVT-GSQD------TTILLWRIHRAFT 2072 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~--VtcLAfSPDG~~LaS-GS~D------GTVrVWDl~tg~~ 2072 (2342)
++|+.|..-+++|..+ -.+||+.+--+......-+.+. +.-+-|- .++|+- |+.+ ..|.|||=....
T Consensus 11 vs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~k~~- 86 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDLKER- 86 (346)
T ss_pred EEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecccCc-
Confidence 8899999989988754 4899998754332222222222 2222222 244433 3332 468899833321
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-C
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR-R 2151 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr-T 2151 (2342)
++..+ .-..+|.+|.+.++ .+|.. ..+.|+||... +
T Consensus 87 ---------------------------------------~i~el-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n 123 (346)
T KOG2111|consen 87 ---------------------------------------CIIEL-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDN 123 (346)
T ss_pred ---------------------------------------EEEEE-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCC
Confidence 22222 23578999998764 34443 35789999987 4
Q ss_pred CeEEEEEecCC--cEEEEEe--cCCcEEEEE-eCCCeEEEEEeCCceee--eecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2152 GRLIRRLVGVD--AHAVSLS--SEGVIMTWN-KLQHTLSSFTLNGVLVA--RAKLPLSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2152 GklIrsL~gh~--vssLSfS--pDG~IlVwd-ssdGsI~I~dlnG~~L~--s~~~~Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
-+.++.+.... .-.++.+ .+..++++- ...|++++-++...... .....|...|.|++++-+|..++|+|..|
T Consensus 124 ~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 124 PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG 203 (346)
T ss_pred hhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence 56666664321 1233333 344555554 44589999888654432 33344999999999999999999998655
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCC-CCCeEEEEEecCCCEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGE-GQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgH-s~~ItsLafSPDG~~LaS 2303 (2342)
+ -|+|||..+|..++.+..|- .+.|.+++|||+..+|++
T Consensus 204 T----------------------------------------LIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 204 T----------------------------------------LIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred E----------------------------------------EEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence 5 49999999999999988543 367999999999999999
Q ss_pred EeCCCcEEEEeCCC
Q 000085 2304 STADKQLIVFTDPA 2317 (2342)
Q Consensus 2304 GSsDGsIrVWDi~s 2317 (2342)
++.-|+|.||.+..
T Consensus 244 sSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRD 257 (346)
T ss_pred EcCCCeEEEEEeec
Confidence 99999999998543
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.89 E-value=6.7e-08 Score=111.45 Aligned_cols=150 Identities=12% Similarity=0.139 Sum_probs=106.4
Q ss_pred EEEEecCCCEEEEEeC----------CCcEEEEECCC-CeEEEEEe--c-CCcEEEEEecCCcEE--EEEeCCCeEEEEE
Q 000085 2125 CCCVSSDLGVVVSCSD----------SSDLLLHSIRR-GRLIRRLV--G-VDAHAVSLSSEGVIM--TWNKLQHTLSSFT 2188 (2342)
Q Consensus 2125 ~VafSPDg~lLaSGS~----------DGtIrIWDLrT-GklIrsL~--g-h~vssLSfSpDG~Il--VwdssdGsI~I~d 2188 (2342)
.+.|+++|+.|+.-.. -|...+|.++. +..+..+. . ..+..++|+|+|..+ +.+.....+.+|+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 4567777766543222 12344444422 22333332 2 248999999999864 3344567899999
Q ss_pred eCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEE
Q 000085 2189 LNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSIC 2268 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIr 2268 (2342)
+++..+... +...++.+.|+|+|+++++|+..+. .|.|.
T Consensus 90 ~~~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~--------------------------------------~G~l~ 128 (194)
T PF08662_consen 90 VKGKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNL--------------------------------------NGDLE 128 (194)
T ss_pred CcccEeEee---cCCCceEEEECCCCCEEEEEEccCC--------------------------------------CcEEE
Confidence 987666543 4567889999999999999974322 57899
Q ss_pred EEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC------CCcEEEEeCCCC
Q 000085 2269 FLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA------DKQLIVFTDPAL 2318 (2342)
Q Consensus 2269 IWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs------DGsIrVWDi~sL 2318 (2342)
+||+.+.+.+.+.. |. .++.++|+|||++|++++. |+.++||+..+.
T Consensus 129 ~wd~~~~~~i~~~~--~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 129 FWDVRKKKKISTFE--HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEECCCCEEeeccc--cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 99999999888766 43 4789999999999998864 899999997543
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.89 E-value=2.2e-07 Score=118.14 Aligned_cols=179 Identities=14% Similarity=0.064 Sum_probs=119.7
Q ss_pred EEEEEcCCCCEEEEEEcC---CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCC--ceEEEeccCCccc
Q 000085 2000 AVVSITHDKEIITGGHVD---GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDT--TILLWRIHRAFTS 2073 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~D---GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DG--TVrVWDl~tg~~i 2073 (2342)
...+|+|||+.|+.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+.|+ +.+.++ .|.+||+.++..
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~- 270 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL- 270 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-
Confidence 347899999988887654 479999998876543 334566677899999998775 455555 477777765321
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CC--cEEEEECC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SS--DLLLHSIR 2150 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DG--tIrIWDLr 2150 (2342)
..+..|........|+||++.|+.++. +| .|+++|+.
T Consensus 271 ----------------------------------------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 271 ----------------------------------------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred ----------------------------------------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 112223333445689999998876654 33 58888988
Q ss_pred CCeEEEEE-ecCCcEEEEEecCCcEEEEEeCCC---eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2151 RGRLIRRL-VGVDAHAVSLSSEGVIMTWNKLQH---TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2151 TGklIrsL-~gh~vssLSfSpDG~IlVwdssdG---sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
+++..+.. .+......+++|||+.+++...++ .|.++++.+....... .........|+|||++|+..+.
T Consensus 311 ~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 311 GGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT--DTGLDESPSFAPNGRMILYATT 384 (417)
T ss_pred CCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc--CCCCCCCceECCCCCEEEEEEe
Confidence 77654322 223356778999999998887664 6778887654333221 2223455689999999988764
No 234
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.89 E-value=2.5e-07 Score=117.53 Aligned_cols=215 Identities=17% Similarity=0.107 Sum_probs=140.9
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC---CceEEEeccCCccccccccCCCCCCccccccCCCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD---TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D---GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~ 2094 (2342)
..|.++|.+++ ..+.+..+...+.+.+|+|||++|+.++.+ ..|.+||+.++..
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---------------------- 226 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---------------------- 226 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE----------------------
Confidence 35888887644 345566677789999999999999887654 4789999876421
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCC--cEEEEECCCCeEEEEEecCC-cEEEEEec
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSS--DLLLHSIRRGRLIRRLVGVD-AHAVSLSS 2170 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DG--tIrIWDLrTGklIrsL~gh~-vssLSfSp 2170 (2342)
..+..+...+.+++|+||++.++ +.+.++ .|++||+.++...+...... ....+|++
T Consensus 227 -------------------~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~ 287 (417)
T TIGR02800 227 -------------------EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSP 287 (417)
T ss_pred -------------------EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECC
Confidence 11122344556788999998765 445444 58999998876543332222 34568999
Q ss_pred CCcEEEEEeC-CC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccc
Q 000085 2171 EGVIMTWNKL-QH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDF 2247 (2342)
Q Consensus 2171 DG~IlVwdss-dG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaF 2247 (2342)
||+.+++... .+ .++++++.+....... .+...+..+.|+|||++++.++.+..
T Consensus 288 dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~-~~~~~~~~~~~spdg~~i~~~~~~~~---------------------- 344 (417)
T TIGR02800 288 DGKSIAFTSDRGGSPQIYMMDADGGEVRRLT-FRGGYNASPSWSPDGDLIAFVHREGG---------------------- 344 (417)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccCeEECCCCCEEEEEEccCC----------------------
Confidence 9998877643 33 5666676654433222 24556778899999999997753211
Q ss_pred ccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeCC
Q 000085 2248 DLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK---QLIVFTDP 2316 (2342)
Q Consensus 2248 spd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG---sIrVWDi~ 2316 (2342)
...|.+||+.++... .+. . ........|+|||++|+..+.++ .+.+.+..
T Consensus 345 ----------------~~~i~~~d~~~~~~~-~l~-~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 345 ----------------GFNIAVMDLDGGGER-VLT-D-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred ----------------ceEEEEEeCCCCCeE-Ecc-C-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 236888998876542 332 1 22345668999999998877654 35555533
No 235
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.87 E-value=6.3e-08 Score=128.20 Aligned_cols=221 Identities=12% Similarity=0.074 Sum_probs=154.0
Q ss_pred EecCCcccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecC
Q 000085 2023 LTSDGAKTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASA 2101 (2342)
Q Consensus 2023 WDl~tgkll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~ 2101 (2342)
|+. .|..+..+..|...|..++.++.. .+++|||.||+|++|+...-....
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~--------------------------- 1085 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG--------------------------- 1085 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---------------------------
Confidence 554 467888899999999999998765 999999999999999997631100
Q ss_pred CCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--e-----EEEEEecCC-cEEE---EEe-
Q 000085 2102 DKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG--R-----LIRRLVGVD-AHAV---SLS- 2169 (2342)
Q Consensus 2102 D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG--k-----lIrsL~gh~-vssL---SfS- 2169 (2342)
+ ..+...++.--...+.++.+.+.++.+|.++.||.|.+.++... . +.+....+. ...+ ++.
T Consensus 1086 -~-----s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~ 1159 (1431)
T KOG1240|consen 1086 -G-----SARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTA 1159 (1431)
T ss_pred -c-----eeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccc
Confidence 0 00112222224578899999999999999999999999998752 1 122222111 1111 111
Q ss_pred cCC-cEEEEEeCCCeEEEEEeCCceeee-ecC-CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccc
Q 000085 2170 SEG-VIMTWNKLQHTLSSFTLNGVLVAR-AKL-PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTED 2246 (2342)
Q Consensus 2170 pDG-~IlVwdssdGsI~I~dlnG~~L~s-~~~-~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ia 2246 (2342)
.++ ..+++....+.+..|++....-.. ... ...+.|++++.+|.+.++++|+.
T Consensus 1160 ~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts------------------------ 1215 (1431)
T KOG1240|consen 1160 IVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTS------------------------ 1215 (1431)
T ss_pred cccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecC------------------------
Confidence 123 367777777888888875322111 111 14589999999999999999962
Q ss_pred cccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC---CEEEEEe--CCCcEEEEeCCCC
Q 000085 2247 FDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN---TNLLVST--ADKQLIVFTDPAL 2318 (2342)
Q Consensus 2247 Fspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG---~~LaSGS--sDGsIrVWDi~sL 2318 (2342)
.|.+.+||++=+.++..+..++..+|+.+..+|-. ...++++ ..+.|.+|+..+.
T Consensus 1216 -----------------~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1216 -----------------RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred -----------------CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 46799999999999998887888999999988743 4555544 5788999995544
No 236
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.86 E-value=5.3e-08 Score=114.89 Aligned_cols=219 Identities=15% Similarity=0.156 Sum_probs=157.3
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL 2116 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L 2116 (2342)
-..+|+|.+|++|+..++.+-....|.|+...... ...+.+++
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-------------------------------------~w~~~htl 51 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-------------------------------------LWEPAHTL 51 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCC-------------------------------------Cceeceeh
Confidence 45789999999999999999999999999877642 12457788
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCeEEEEEe---c-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2117 RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR-RGRLIRRLV---G-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr-TGklIrsL~---g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
..|...|++|+|+|..+.|++|+.|..-++|... .++-..++. . ...+++.|+|.++.++.++....|.++.+.+
T Consensus 52 s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 52 SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred hhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 9999999999999999999999999999999994 444333322 1 2378999999999999988888888887754
Q ss_pred ce----eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2192 VL----VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2192 ~~----L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
.. -..+..++...|++++|+|++-++++|+.|+.-.... .-+..+.... .+
T Consensus 132 ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS-ayIK~Vdekp--------ap---------------- 186 (361)
T KOG1523|consen 132 ENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS-AYIKGVDEKP--------AP---------------- 186 (361)
T ss_pred ccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE-EeeeccccCC--------CC----------------
Confidence 21 1223345788999999999999999998554411000 0000000000 00
Q ss_pred EEEECC--CCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2268 CFLDLH--TLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2268 rIWDL~--Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.-|+-+ -|+++..+. ...+.|..+.|+|+|..|+-.+.|+.+.+-|....
T Consensus 187 ~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 187 TPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred CCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 001111 133344443 45678999999999999999999999999996554
No 237
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=3.2e-07 Score=113.90 Aligned_cols=332 Identities=14% Similarity=0.112 Sum_probs=216.0
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC-----------CCceEEEec
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ-----------DTTILLWRI 2067 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~-----------DGTVrVWDl 2067 (2342)
-+.+.|||-|.+|++-+.-| |.+|--.+-..++.+. |.+ |.-+.|||+.+||+|-|. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 35689999999999988665 7899766555555554 665 899999999999999653 257999999
Q ss_pred cCCcccccccc--CCCCCCccccccCCCCCceeecCCCccccccCCceEEecC---CCCCeEEEEEecCCCEEEEEeC--
Q 000085 2068 HRAFTSRTGTI--EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG---HHREILCCCVSSDLGVVVSCSD-- 2140 (2342)
Q Consensus 2068 ~tg~~i~t~~~--~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G---Hs~~Vt~VafSPDg~lLaSGS~-- 2140 (2342)
.+|...+.+.. ..........||.|++++|.-..+.+....... ..-+.+ .-..|....|+|.+.+||-=+.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps-f~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCc-eeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99987777633 333445567889999999888777776665543 222222 2356788899999887763221
Q ss_pred ---CCcEEEEECCCCeEEEEEecCCcE--EEEEecCCcEEEEEeC-------CC---eEEEEEeCCceeeeecCCCCCCe
Q 000085 2141 ---SSDLLLHSIRRGRLIRRLVGVDAH--AVSLSSEGVIMTWNKL-------QH---TLSSFTLNGVLVARAKLPLSGSI 2205 (2342)
Q Consensus 2141 ---DGtIrIWDLrTGklIrsL~gh~vs--sLSfSpDG~IlVwdss-------dG---sI~I~dlnG~~L~s~~~~Hs~~I 2205 (2342)
-..+.+-.+-+++.+++-..+.+. .+-|-.+|.++..... .| .+.+|.+..+.+..........|
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 235667777777777776555443 3456667776655421 12 24555555444333333467889
Q ss_pred EEEEEccCCCEEEEEeCCCCCCCCCcccccccC-------------CCCCCccccccccccccCCCCccCCCCeEEEEEC
Q 000085 2206 GCMEISLDGHSALIGVNSSSTNNGSYDNIQGLN-------------SKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDL 2272 (2342)
Q Consensus 2206 tsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~-------------~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL 2272 (2342)
...+|-|.|..+++-+.... .....++... ....+.+.++|.+......... +..|.+.++|+
T Consensus 449 i~FaWEP~gdkF~vi~g~~~---k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~-s~~g~l~F~D~ 524 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTV---KNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALV-SRRGDLEFYDT 524 (698)
T ss_pred eeeeeccCCCeEEEEEcccc---ccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEec-ccccceEEEec
Confidence 99999999988776542111 1111222222 2234455666665443332222 25788999999
Q ss_pred CCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC------CCcEEEEeCCCC--ChhhhhhhhhccccCCCcccc
Q 000085 2273 HTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA------DKQLIVFTDPAL--SLKVVDQMLKLGWEGDGLSPL 2339 (2342)
Q Consensus 2273 ~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs------DGsIrVWDi~sL--s~k~LdQLLk~GWegDGLspL 2339 (2342)
.-..+..+-...|. ..+.+.|.|.|+++++++. |...++|+..+- ....++.+-+..|.+..=++|
T Consensus 525 ~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPps~L 598 (698)
T KOG2314|consen 525 DYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPPSLL 598 (698)
T ss_pred chhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecHHHHHHHHHHHHhhccCCCCCccc
Confidence 74333222221243 4678999999999999874 667888997653 456778888889998865555
No 238
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.85 E-value=1e-07 Score=111.02 Aligned_cols=230 Identities=15% Similarity=0.157 Sum_probs=154.1
Q ss_pred cCCcEEEEecCCcc--c-ceecccCCCCeEEEEecCCC-CEEEEEeCC-------CceEEEeccCCccccccccCCCCCC
Q 000085 2016 VDGSIKLLTSDGAK--T-LETASGHCAPVTCLALSSDS-NFLVTGSQD-------TTILLWRIHRAFTSRTGTIEPSSGM 2084 (2342)
Q Consensus 2016 ~DGsIrVWDl~tgk--l-l~tL~GHt~~VtcLAfSPDG-~~LaSGS~D-------GTVrVWDl~tg~~i~t~~~~~~~~V 2084 (2342)
.|+.|.+.+++.+. . ...+..|.+.|+.++-+|-. +.|+|+-.| ..+.||.+.........
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~-------- 109 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS-------- 109 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc--------
Confidence 57788888776542 2 24677788999999999954 556665432 23568877653211000
Q ss_pred ccccccCCCCCceeecCCCccccccCCceEEec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE-EEEEec--
Q 000085 2085 GTPGNSIGSSTPANASADKSRRRRIEGPIHVLR-GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL-IRRLVG-- 2160 (2342)
Q Consensus 2085 ~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~-GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl-IrsL~g-- 2160 (2342)
.+-.++..+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+..
T Consensus 110 -----------------------~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~ 165 (370)
T KOG1007|consen 110 -----------------------STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE 165 (370)
T ss_pred -----------------------chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccc
Confidence 0011222333 4556899999999999998776 88999999988765 333321
Q ss_pred -----CCcEEEEEec--CCcEEEEEeCCCeEEEEEeCCce-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcc
Q 000085 2161 -----VDAHAVSLSS--EGVIMTWNKLQHTLSSFTLNGVL-VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYD 2232 (2342)
Q Consensus 2161 -----h~vssLSfSp--DG~IlVwdssdGsI~I~dlnG~~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d 2232 (2342)
+..+.-+||| ||+.++. ..++++..|++.... ...+...|...|..+.|+|+-+++++.+ .
T Consensus 166 s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~---g------- 234 (370)
T KOG1007|consen 166 SAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTC---G------- 234 (370)
T ss_pred cccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEc---C-------
Confidence 1133445665 4554443 345667777765321 1222233888999999999988766543 1
Q ss_pred cccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC-CeEEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcE
Q 000085 2233 NIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT-LKVFHVLKLGEGQDITALALNKDN-TNLLVSTADKQL 2310 (2342)
Q Consensus 2233 ~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T-gk~L~tL~lgHs~~ItsLafSPDG-~~LaSGSsDGsI 2310 (2342)
.||.|+|||.+. ..+++.+. +|...|++|.|+|.. +.|++||.|..|
T Consensus 235 ------------------------------DdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 235 ------------------------------DDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred ------------------------------CCccEEEEeccCCCccccccC-CCceEEEEEEecCccceEEEecCCCcee
Confidence 278899999975 55677888 999999999999965 567799999999
Q ss_pred EEEeCCCCC
Q 000085 2311 IVFTDPALS 2319 (2342)
Q Consensus 2311 rVWDi~sLs 2319 (2342)
.+|-....+
T Consensus 284 ~Lsca~svS 292 (370)
T KOG1007|consen 284 NLSCASSVS 292 (370)
T ss_pred EEEeccccc
Confidence 999865544
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=4.5e-07 Score=116.34 Aligned_cols=180 Identities=15% Similarity=0.042 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCEEEEEEcC---CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCC--ceEEEeccCCcc
Q 000085 1999 SAVVSITHDKEIITGGHVD---GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDT--TILLWRIHRAFT 2072 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~D---GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DG--TVrVWDl~tg~~ 2072 (2342)
+...+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+.|+ +.+.++ .|.+||+.++..
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 3457899999988776544 368999998876533 333344556789999999876 555565 466667765321
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CC--cEEEEEC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SS--DLLLHSI 2149 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DG--tIrIWDL 2149 (2342)
..+..+........|+|||+.++..+. +| .|+++|+
T Consensus 280 -----------------------------------------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 280 -----------------------------------------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred -----------------------------------------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 112223334556789999988765553 33 5788888
Q ss_pred CCCeEEEEE-ecCCcEEEEEecCCcEEEEEeCC-C--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2150 RRGRLIRRL-VGVDAHAVSLSSEGVIMTWNKLQ-H--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2150 rTGklIrsL-~gh~vssLSfSpDG~IlVwdssd-G--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
.+++..+.. .+......+++|||+.+++.... + .+.++++.+....... +........|+|||+.++..+.
T Consensus 319 ~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt--~~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 319 NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT--DTSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred CCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc--CCCCCCCceECCCCCEEEEEEe
Confidence 887754322 22234457899999988877543 3 4677777654433322 2223335689999999987753
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=4.8e-07 Score=116.98 Aligned_cols=213 Identities=10% Similarity=0.037 Sum_probs=131.1
Q ss_pred EEEEEcCCCCEEEEEEcC-C--cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEE-EeCCCc--eEEEeccCCccc
Q 000085 2000 AVVSITHDKEIITGGHVD-G--SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVT-GSQDTT--ILLWRIHRAFTS 2073 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~D-G--sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaS-GS~DGT--VrVWDl~tg~~i 2073 (2342)
....|+|||+.|+..+.+ + .|++||+.+++... +....+.....+|+|||+.|+. .+.++. |.+||+.++.
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~-- 297 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA-- 297 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC--
Confidence 347899999988776543 2 58889998876432 2222233457899999997764 566776 5555655431
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CC--cEEEEECC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SS--DLLLHSIR 2150 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DG--tIrIWDLr 2150 (2342)
...+..+.......+|+||++.++..+. +| .|+++|+.
T Consensus 298 ---------------------------------------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~ 338 (448)
T PRK04792 298 ---------------------------------------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA 338 (448)
T ss_pred ---------------------------------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 1122333444567789999998766553 33 57777888
Q ss_pred CCeEEEE-EecCCcEEEEEecCCcEEEEEeC-CC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2151 RGRLIRR-LVGVDAHAVSLSSEGVIMTWNKL-QH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2151 TGklIrs-L~gh~vssLSfSpDG~IlVwdss-dG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
+++..+. +.+......+|+|||+.+++... .+ .|.++++.+........ ........|+|||+.++..+..+.
T Consensus 339 ~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~--~~~d~~ps~spdG~~I~~~~~~~g- 415 (448)
T PRK04792 339 SGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS--TRLDESPSVAPNGTMVIYSTTYQG- 415 (448)
T ss_pred CCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC--CCCCCCceECCCCCEEEEEEecCC-
Confidence 7775432 23333445689999998877544 34 34555665543332221 112234579999999987653222
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
...+++++. ++.....+. .+.+.+...+|+|
T Consensus 416 -------------------------------------~~~l~~~~~-~G~~~~~l~-~~~g~~~~p~Wsp 446 (448)
T PRK04792 416 -------------------------------------KQVLAAVSI-DGRFKARLP-AGQGEVKSPAWSP 446 (448)
T ss_pred -------------------------------------ceEEEEEEC-CCCceEECc-CCCCCcCCCccCC
Confidence 235777787 455555555 4455677778876
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=7.1e-07 Score=114.52 Aligned_cols=214 Identities=14% Similarity=0.122 Sum_probs=136.5
Q ss_pred cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC---CceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2019 SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD---TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2019 sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D---GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
.|.++|.+++. .+.+..|...+...+|+|||+.|+..+.+ ..|.+||+.++...
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~---------------------- 236 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE---------------------- 236 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE----------------------
Confidence 47778887554 45566677889999999999999877644 35788888764211
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCC--cEEEEECCCCeEEEEEecCC--cEEEEEec
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSS--DLLLHSIRRGRLIRRLVGVD--AHAVSLSS 2170 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DG--tIrIWDLrTGklIrsL~gh~--vssLSfSp 2170 (2342)
.+....+.+.+.+|+|||+.++ +.+.+| .|++||+.++...+ +..+. ....+|+|
T Consensus 237 -------------------~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~sp 296 (430)
T PRK00178 237 -------------------QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGK 296 (430)
T ss_pred -------------------EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECC
Confidence 1111122344678999998876 455555 58888998887543 33322 45578999
Q ss_pred CCcEEEEEeC-CC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccc
Q 000085 2171 EGVIMTWNKL-QH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDF 2247 (2342)
Q Consensus 2171 DG~IlVwdss-dG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaF 2247 (2342)
||+.+++... ++ .++++++.+........ .........|+|||++++..+....
T Consensus 297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~~~~~---------------------- 353 (430)
T PRK00178 297 DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMVHRQDG---------------------- 353 (430)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEEEEccCC----------------------
Confidence 9997777643 33 46666665443333222 1223345789999999986642111
Q ss_pred ccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCC
Q 000085 2248 DLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD---KQLIVFTDPA 2317 (2342)
Q Consensus 2248 spd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD---GsIrVWDi~s 2317 (2342)
...|.+||+.+++.. .+. +........|+|||++|+..+.+ ..|.+++..+
T Consensus 354 ----------------~~~l~~~dl~tg~~~-~lt--~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 354 ----------------NFHVAAQDLQRGSVR-ILT--DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ----------------ceEEEEEECCCCCEE-Ecc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 235889999887643 333 12223356899999999876644 3466667544
No 242
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.81 E-value=1.2e-08 Score=125.91 Aligned_cols=93 Identities=16% Similarity=0.257 Sum_probs=79.5
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
+++-++|+|||++||+.+.||.+||+|.++.+++..++.--+...|++|||||+||+||+.|--|.||.+...+.+.. .
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-G 370 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-G 370 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-c
Confidence 344499999999999999999999999999988888777778899999999999999999999999999988543322 3
Q ss_pred cCCCCCCccccccC
Q 000085 2078 IEPSSGMGTPGNSI 2091 (2342)
Q Consensus 2078 ~~~~~~V~svs~Sp 2091 (2342)
.+|..-|..++|.|
T Consensus 371 qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 371 QGHKSWVSVVAFDP 384 (636)
T ss_pred cccccceeeEeecc
Confidence 56777777777775
No 243
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.81 E-value=7.5e-07 Score=110.34 Aligned_cols=321 Identities=15% Similarity=0.123 Sum_probs=202.5
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC---------------CceE
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD---------------TTIL 2063 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D---------------GTVr 2063 (2342)
+..+++||.|.+|++.+.. .|.+|+...+..+..+. |. .|.-+.|+|.++||+|=+.. ..+.
T Consensus 35 ~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~ 111 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-HP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVF 111 (561)
T ss_pred hhheeecCcchheehhhcc-ceEEccccchhheeeee-cC-CceecccCcccceeeeeccCCccChhhccCCccccCcee
Confidence 4458999999999987644 48899877665444443 44 48999999999999997643 3499
Q ss_pred EEeccCCccccccccCCCC--CCccccccCCCCCceeecCCCcccccc-----CCceEEecCCCCCeEEEEEecCCC--E
Q 000085 2064 LWRIHRAFTSRTGTIEPSS--GMGTPGNSIGSSTPANASADKSRRRRI-----EGPIHVLRGHHREILCCCVSSDLG--V 2134 (2342)
Q Consensus 2064 VWDl~tg~~i~t~~~~~~~--~V~svs~SpDG~~Las~s~D~s~~~~i-----~~~l~~L~GHs~~Vt~VafSPDg~--l 2134 (2342)
|||+.++..+..+...... ....+.|+.+..+.+-...+......+ ..+.+.++ ...|....|+|.++ .
T Consensus 112 vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~ 189 (561)
T COG5354 112 VWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDE 189 (561)
T ss_pred EEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCce
Confidence 9999998776665322222 333567777766664443333333221 11222222 35678888888643 3
Q ss_pred EE-----EEeCCCcEEEEECCCCeEEEEE--ecCCcEEEEEecCCcEEEEEeC-----------CCeEEEEEeCCceeee
Q 000085 2135 VV-----SCSDSSDLLLHSIRRGRLIRRL--VGVDAHAVSLSSEGVIMTWNKL-----------QHTLSSFTLNGVLVAR 2196 (2342)
Q Consensus 2135 La-----SGS~DGtIrIWDLrTGklIrsL--~gh~vssLSfSpDG~IlVwdss-----------dGsI~I~dlnG~~L~s 2196 (2342)
++ ..+.++.+++|.+..+..+.+- .......+-|.+.|..++.-.. ...++++.+.+..+..
T Consensus 190 la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V 269 (561)
T COG5354 190 LAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV 269 (561)
T ss_pred EEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccce
Confidence 33 3567889999999877766543 2233456677788876654321 1357777777554443
Q ss_pred ecCCCCCCeEEEEEccCCCEEEEEe--CCCCCCCCCcccccccC--------CCCCCccccccccccccCCCCccCCCCe
Q 000085 2197 AKLPLSGSIGCMEISLDGHSALIGV--NSSSTNNGSYDNIQGLN--------SKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2197 ~~~~Hs~~ItsLafSPDGk~LaSGS--~DGs~d~~i~d~Lw~l~--------~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
.. ...++|...+|.|+++.+++.+ .... ..++++. ....+...|++........+ +.--.|.
T Consensus 270 ~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~------~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~ag-F~nl~gn 341 (561)
T COG5354 270 EK-DLKDPVHDFTWEPLSSRFAVISGYMPAS------VSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAG-FDNLQGN 341 (561)
T ss_pred ec-cccccceeeeecccCCceeEEecccccc------eeecccccceEEecCCcccccccccCcccEEEEec-CCccccc
Confidence 22 3578999999999988776654 1111 1122222 22344555666543322211 1113578
Q ss_pred EEEEECCCCeEEE-EEecCCCCCeEEEEEecCCCEEEEEe------CCCcEEEEeCCCCChhhhhhhhhccccCCCccc
Q 000085 2267 ICFLDLHTLKVFH-VLKLGEGQDITALALNKDNTNLLVST------ADKQLIVFTDPALSLKVVDQMLKLGWEGDGLSP 2338 (2342)
Q Consensus 2267 IrIWDL~Tgk~L~-tL~lgHs~~ItsLafSPDG~~LaSGS------sDGsIrVWDi~sLs~k~LdQLLk~GWegDGLsp 2338 (2342)
|.+||......+. .+. ....+-+.|+||++++.+.. .|..|.||++.+- .+..+.+.-|.+.|-..
T Consensus 342 i~i~~~~~rf~~~~~~~---~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~---~~fel~~~~W~p~~~~~ 414 (561)
T COG5354 342 IEIFDPAGRFKVAGAFN---GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA---KVFELTNITWDPSGQYV 414 (561)
T ss_pred eEEeccCCceEEEEEee---cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc---hhhhhhhccccCCcccc
Confidence 9999987655444 554 23345678999999998764 4889999997655 55688888998876443
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.79 E-value=2.8e-07 Score=116.20 Aligned_cols=283 Identities=12% Similarity=0.092 Sum_probs=162.6
Q ss_pred EEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCcccccc
Q 000085 2011 ITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNS 2090 (2342)
Q Consensus 2011 LASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~S 2090 (2342)
+++-..+|.|.|.|..+.+.+..+..+...-..+.|+|||++++.++.||.|.++|+.+.+.+.
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~---------------- 72 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA---------------- 72 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE----------------
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE----------------
Confidence 3555678999999999999999988655544557899999999999999999999999864322
Q ss_pred CCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeEEEEEecC--------
Q 000085 2091 IGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIRRGRLIRRLVGV-------- 2161 (2342)
Q Consensus 2091 pDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTGklIrsL~gh-------- 2161 (2342)
.+.. .....++++++||+++++++ .++.+.++|.++.+.++.+...
T Consensus 73 ------------------------~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~ 127 (369)
T PF02239_consen 73 ------------------------TIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPE 127 (369)
T ss_dssp ------------------------EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS-
T ss_pred ------------------------EEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccC
Confidence 2222 23457899999999988665 6899999999999999988643
Q ss_pred -CcEEEEEecCCcEEEEEeC-CCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc-----cc
Q 000085 2162 -DAHAVSLSSEGVIMTWNKL-QHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY-----DN 2233 (2342)
Q Consensus 2162 -~vssLSfSpDG~IlVwdss-dGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~-----d~ 2233 (2342)
.+..+..++.+..++.+.. .+.+.+.+... ..+...............|+|+|+|++++..... ..... ..
T Consensus 128 ~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn-~i~viD~~~~k~ 206 (369)
T PF02239_consen 128 SRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSN-KIAVIDTKTGKL 206 (369)
T ss_dssp --EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGT-EEEEEETTTTEE
T ss_pred CCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccc-eeEEEeeccceE
Confidence 2345667888886666654 47777766542 2222222224456778899999999988642111 00000 00
Q ss_pred ccccCCC---CCCcc--cccccc--cc-ccCCCC---ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEE
Q 000085 2234 IQGLNSK---QSGTE--DFDLAS--DQ-SVDNNR---FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLL 2302 (2342)
Q Consensus 2234 Lw~l~~~---~~~~i--aFspd~--~~-s~ss~~---ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~La 2302 (2342)
+..+... ..... ..++.. .. ...... .......+.+||..+.+.+.++. ..+.+ .-+..||+++++.
T Consensus 207 v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~-~~G~g-lFi~thP~s~~vw 284 (369)
T PF02239_consen 207 VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIP-TQGGG-LFIKTHPDSRYVW 284 (369)
T ss_dssp EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE--SSSS---EE--TT-SEEE
T ss_pred EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEE-CCCCc-ceeecCCCCccEE
Confidence 0111000 00000 011111 00 000000 11234456688999999999999 45555 7788899999999
Q ss_pred EE----eCCCcEEEEeCCCCCh-hhh---hh--hhhccccCCCcc
Q 000085 2303 VS----TADKQLIVFTDPALSL-KVV---DQ--MLKLGWEGDGLS 2337 (2342)
Q Consensus 2303 SG----SsDGsIrVWDi~sLs~-k~L---dQ--LLk~GWegDGLs 2337 (2342)
+. ...++|.|+|..++.. +.+ .. .....|..||-.
T Consensus 285 vd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~ 329 (369)
T PF02239_consen 285 VDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKE 329 (369)
T ss_dssp EE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred eeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCE
Confidence 88 4558999999877741 111 11 334456666643
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.79 E-value=5.8e-08 Score=127.81 Aligned_cols=192 Identities=17% Similarity=0.236 Sum_probs=141.3
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
|-..+.++....++.+-+|+...+ +.+............++..+.++++.-++++|+.-+.|.+|+....+.-..
T Consensus 96 ~~e~k~i~l~~~~ns~~i~d~~~~-----~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~ 170 (967)
T KOG0974|consen 96 FEENKKIALVTSRNSLLIRDSKNS-----SVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIR 170 (967)
T ss_pred hhhcceEEEEEcCceEEEEecccC-----ceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcce
Confidence 344556666666667777775432 222222221122223444456677777999999999999999874333346
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
+.||.+.|..+.|+.||++++|.|.|.++++|++.+.....
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------------------------------------- 211 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------------------------------------- 211 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---------------------------------------
Confidence 89999999999999999999999999999999999853211
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---cEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD---AHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~---vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
....+|+..|+.++|.|+ .++|++.|.++++|+. .+..+..+..|. +..++..++..+++.+..|+.+++|++.
T Consensus 212 ~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 212 CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred cccccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 234689999999999987 8999999999999975 444555666653 6777888888888888888888888876
Q ss_pred Cc
Q 000085 2191 GV 2192 (2342)
Q Consensus 2191 G~ 2192 (2342)
+.
T Consensus 289 ~r 290 (967)
T KOG0974|consen 289 GR 290 (967)
T ss_pred cc
Confidence 53
No 246
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=3.2e-07 Score=110.85 Aligned_cols=235 Identities=12% Similarity=0.099 Sum_probs=164.1
Q ss_pred EEEcCCCC--EEEEEEcCCcEEEEecCCcccce------ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc
Q 000085 2002 VSITHDKE--IITGGHVDGSIKLLTSDGAKTLE------TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 2002 VafSpDGk--lLASGS~DGsIrVWDl~tgkll~------tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
++|.-|++ ++...+.|..+..+.+....+.. +..+.+.+|..++.. ...|++|-.+|.+.+|....+...
T Consensus 61 l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~h 138 (412)
T KOG3881|consen 61 LLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLH 138 (412)
T ss_pred heeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEeccCCccc
Confidence 55555554 56555567777777766554433 334556778777765 458999999999999998864211
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCC--CcEEEEECC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDS--SDLLLHSIR 2150 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~D--GtIrIWDLr 2150 (2342)
..++..+..+ ..+..+.-++. ...+++|+.. ..+.|||+.
T Consensus 139 ------------------------------------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 139 ------------------------------------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred ------------------------------------cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 0111122222 22333333333 3456779988 889999999
Q ss_pred CCeEEEEEecCC-----------cEEEEEecC--CcEEEEEeCCCeEEEEEeCC--ceeeeecCCCCCCeEEEEEccCCC
Q 000085 2151 RGRLIRRLVGVD-----------AHAVSLSSE--GVIMTWNKLQHTLSSFTLNG--VLVARAKLPLSGSIGCMEISLDGH 2215 (2342)
Q Consensus 2151 TGklIrsL~gh~-----------vssLSfSpD--G~IlVwdssdGsI~I~dlnG--~~L~s~~~~Hs~~ItsLafSPDGk 2215 (2342)
+.+.+.+-+... .+.+.|-+. ...++.....+.+++|+... +++....+ ...+|+++...|+|+
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn 260 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGN 260 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCCc
Confidence 886655433211 245666665 66778888889999999863 23333222 567999999999999
Q ss_pred EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe
Q 000085 2216 SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN 2295 (2342)
Q Consensus 2216 ~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS 2295 (2342)
++++|.. -+.+..+|+++++.+.....+..+.|+++..+
T Consensus 261 ~Iy~gn~-----------------------------------------~g~l~~FD~r~~kl~g~~~kg~tGsirsih~h 299 (412)
T KOG3881|consen 261 FIYTGNT-----------------------------------------KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCH 299 (412)
T ss_pred EEEEecc-----------------------------------------cchhheecccCceeeccccCCccCCcceEEEc
Confidence 9998842 35688999999998887333889999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCC
Q 000085 2296 KDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2296 PDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
|.+++|++||-|..|||+|..+
T Consensus 300 p~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 300 PTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CCCceEEeeccceeEEEeeccc
Confidence 9999999999999999999766
No 247
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=1.4e-07 Score=115.03 Aligned_cols=191 Identities=10% Similarity=0.039 Sum_probs=130.3
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
..+|..+++++.|+++|+|+-|.-.. +..-..+-..|..+.|+|||++|++-+.| ..+||++++|..++.
T Consensus 153 ~~~gs~latgg~dg~lRv~~~Ps~~t---------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 153 NGDGSKLATGGTDGTLRVWEWPSMLT---------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred cCCCCEeeeccccceEEEEecCcchh---------hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 35678999999999999998554111 11112233456669999999999999999 999999999977766
Q ss_pred ccc--CCCCeEEEEecCCC---CEE--EEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccc
Q 000085 2034 ASG--HCAPVTCLALSSDS---NFL--VTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR 2106 (2342)
Q Consensus 2034 L~G--Ht~~VtcLAfSPDG---~~L--aSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~ 2106 (2342)
... -......+.|+.|+ .+. +....-+.|+.||+..... +..
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~-----------------------------~~~-- 271 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG-----------------------------SNF-- 271 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc-----------------------------ccc--
Confidence 542 23346677787776 222 2334456677776654210 000
Q ss_pred cccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CC--cEEEEEecCCcEEEEEeCCCe
Q 000085 2107 RRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG-VD--AHAVSLSSEGVIMTWNKLQHT 2183 (2342)
Q Consensus 2107 ~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g-h~--vssLSfSpDG~IlVwdssdGs 2183 (2342)
............|++++++.+|++++.|+.||.|-|++..+-++++.++. |. ++.++|+||.+..+--..+..
T Consensus 272 ----l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 272 ----LRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred ----cchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 00111112235799999999999999999999999999998888777653 43 789999999887766444444
Q ss_pred EEEEEe
Q 000085 2184 LSSFTL 2189 (2342)
Q Consensus 2184 I~I~dl 2189 (2342)
..+..+
T Consensus 348 ~~v~~l 353 (398)
T KOG0771|consen 348 AAVTKL 353 (398)
T ss_pred eeEEEE
Confidence 444443
No 248
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.72 E-value=3.8e-08 Score=113.51 Aligned_cols=140 Identities=17% Similarity=0.251 Sum_probs=116.3
Q ss_pred EEEEEEcCCcEEEEecCCc----------ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc--ccc-cc
Q 000085 2010 IITGGHVDGSIKLLTSDGA----------KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF--TSR-TG 2076 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tg----------kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~--~i~-t~ 2076 (2342)
++++|..+|.+.+||+.++ +.......|..+|.++.+.+.-..=++|+.+..+..|.++... ... ..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 7889999999999999987 3333456799999999998766666888999999999987642 211 11
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccc---cccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRR---RRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSI 2149 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~---~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDL 2149 (2342)
..-...++..+.+-||++.+++.+||+..+ |+...++..+.-|.+.|++++|+|+..+++++|.|+.|.+|++
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 233456788889999999999999997644 7788899999999999999999999999999999999999986
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.72 E-value=1.7e-06 Score=112.02 Aligned_cols=216 Identities=16% Similarity=0.079 Sum_probs=132.9
Q ss_pred cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC-C--ceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2019 SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD-T--TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2019 sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D-G--TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
.|.++|.+... .+.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.++...
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~---------------------- 255 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE---------------------- 255 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE----------------------
Confidence 57777876543 34556677889999999999998876543 3 4777777664210
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCc--EEEEECCCCeEEEEEecC-CcEEEEEecC
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSD--LLLHSIRRGRLIRRLVGV-DAHAVSLSSE 2171 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGt--IrIWDLrTGklIrsL~gh-~vssLSfSpD 2171 (2342)
.+..+. +.....+|+|||+.|+ +.+.+|. |+++|+.+++..+..... .....+|+||
T Consensus 256 ----------------~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpD 316 (448)
T PRK04792 256 ----------------KVTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPD 316 (448)
T ss_pred ----------------EecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCC
Confidence 011111 1223578999999776 4566665 888899887654432222 2466889999
Q ss_pred CcEEEEEeC-CC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccc
Q 000085 2172 GVIMTWNKL-QH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFD 2248 (2342)
Q Consensus 2172 G~IlVwdss-dG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFs 2248 (2342)
|+.+++... ++ .++++++.+........ ........+|+|||++++..+....
T Consensus 317 G~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g----------------------- 372 (448)
T PRK04792 317 GKSLIFTSERGGKPQIYRVNLASGKVSRLTF-EGEQNLGGSITPDGRSMIMVNRTNG----------------------- 372 (448)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEEEec-CCCCCcCeeECCCCCEEEEEEecCC-----------------------
Confidence 998777643 33 45555665443333221 2223345789999999987652111
Q ss_pred cccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC-CCc--EEEEeCCCC
Q 000085 2249 LASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA-DKQ--LIVFTDPAL 2318 (2342)
Q Consensus 2249 pd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs-DGs--IrVWDi~sL 2318 (2342)
...|.++|+.+++.. .+. .. .......|+|||++|+..+. +|. |.+++.++.
T Consensus 373 ---------------~~~I~~~dl~~g~~~-~lt-~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 373 ---------------KFNIARQDLETGAMQ-VLT-ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred ---------------ceEEEEEECCCCCeE-Ecc-CC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 134777888887643 232 11 12234589999998886654 343 667775443
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.69 E-value=9.9e-06 Score=101.46 Aligned_cols=250 Identities=18% Similarity=0.182 Sum_probs=157.1
Q ss_pred EEEEEcCCCCEEEEEEc----CCcEEEEecCCc--cc--ceecccCCCCeEEEEecCCCCEEEEEe-CCCceEEEeccCC
Q 000085 2000 AVVSITHDKEIITGGHV----DGSIKLLTSDGA--KT--LETASGHCAPVTCLALSSDSNFLVTGS-QDTTILLWRIHRA 2070 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~----DGsIrVWDl~tg--kl--l~tL~GHt~~VtcLAfSPDG~~LaSGS-~DGTVrVWDl~tg 2070 (2342)
..++++|++++|.+... ++.|..|.+... ++ +.........-+.++++|++++|+++. .+|+|.++++...
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence 45899999999888876 568999988753 32 333332334567899999999999887 4899999999873
Q ss_pred ccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEEC
Q 000085 2071 FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SSDLLLHSI 2149 (2342)
Q Consensus 2071 ~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DGtIrIWDL 2149 (2342)
..+.... ..+.. .+. .+. ..........++.|+|+++++++... ...|.+|++
T Consensus 120 g~l~~~~-------~~~~~--------~g~----------g~~-~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~ 173 (345)
T PF10282_consen 120 GSLGEVV-------QTVRH--------EGS----------GPN-PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDI 173 (345)
T ss_dssp SEEEEEE-------EEEES--------EEE----------ESS-TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccceee-------eeccc--------CCC----------CCc-ccccccccceeEEECCCCCEEEEEecCCCEEEEEEE
Confidence 1111100 00000 000 000 00112345678999999998877653 357999998
Q ss_pred CCCe--EE--EEEe---cCCcEEEEEecCCcEEE-EEeCCCeEEEEEeC--Cceeeee---c-C--C--CCCCeEEEEEc
Q 000085 2150 RRGR--LI--RRLV---GVDAHAVSLSSEGVIMT-WNKLQHTLSSFTLN--GVLVARA---K-L--P--LSGSIGCMEIS 2211 (2342)
Q Consensus 2150 rTGk--lI--rsL~---gh~vssLSfSpDG~IlV-wdssdGsI~I~dln--G~~L~s~---~-~--~--Hs~~ItsLafS 2211 (2342)
.... +. ..+. +.+.+.++|+|||+++. .+..++.|.+|+++ ...+... . . . .......++++
T Consensus 174 ~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is 253 (345)
T PF10282_consen 174 DDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS 253 (345)
T ss_dssp -TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-
T ss_pred eCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe
Confidence 7654 32 2232 23478999999998654 44567889998886 2222111 1 1 1 22368899999
Q ss_pred cCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC--CC--eEEEEEecCCCC
Q 000085 2212 LDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH--TL--KVFHVLKLGEGQ 2287 (2342)
Q Consensus 2212 PDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~--Tg--k~L~tL~lgHs~ 2287 (2342)
|||++|+++.. .+++|.+|++. ++ +.+..+. ..+.
T Consensus 254 pdg~~lyvsnr----------------------------------------~~~sI~vf~~d~~~g~l~~~~~~~-~~G~ 292 (345)
T PF10282_consen 254 PDGRFLYVSNR----------------------------------------GSNSISVFDLDPATGTLTLVQTVP-TGGK 292 (345)
T ss_dssp TTSSEEEEEEC----------------------------------------TTTEEEEEEECTTTTTEEEEEEEE-ESSS
T ss_pred cCCCEEEEEec----------------------------------------cCCEEEEEEEecCCCceEEEEEEe-CCCC
Confidence 99999998742 14578888873 23 4444554 3345
Q ss_pred CeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 000085 2288 DITALALNKDNTNLLVST-ADKQLIVFTDP 2316 (2342)
Q Consensus 2288 ~ItsLafSPDG~~LaSGS-sDGsIrVWDi~ 2316 (2342)
..+.++++|+|++|+++. .++.|.+|+++
T Consensus 293 ~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 293 FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 589999999999999886 56789999853
No 251
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.64 E-value=3e-06 Score=100.54 Aligned_cols=171 Identities=13% Similarity=0.179 Sum_probs=119.8
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC-Ccccccc-ccCCCCCCccccccCCCCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR-AFTSRTG-TIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t-g~~i~t~-~~~~~~~V~svs~SpDG~~ 2095 (2342)
+.+.|||-...+++.++. ...+|.++.++++ .||.. ..+.|.||.+.+ .+..+.+ ....+.+..++.-..+...
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 579999966667777665 5678999999865 44433 467899999984 3334433 2222333322222222222
Q ss_pred ceeecCC-C-cccccc----CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCc-EEEEECCCCeEEEEEec----CCcE
Q 000085 2096 PANASAD-K-SRRRRI----EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSD-LLLHSIRRGRLIRRLVG----VDAH 2164 (2342)
Q Consensus 2096 Las~s~D-~-s~~~~i----~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGt-IrIWDLrTGklIrsL~g----h~vs 2164 (2342)
++.-+.. + +...+. ..+...+..|...|.|++.+.+|.++||+|..|| |+|||..+|..++.++. ..++
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 2222111 1 111111 1234678899999999999999999999999997 78999999999999864 2479
Q ss_pred EEEEecCCcEEEEEeCCCeEEEEEeCCc
Q 000085 2165 AVSLSSEGVIMTWNKLQHTLSSFTLNGV 2192 (2342)
Q Consensus 2165 sLSfSpDG~IlVwdssdGsI~I~dlnG~ 2192 (2342)
+++|||++.+++..+..|++++|.+.+.
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998653
No 252
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=3.6e-07 Score=112.45 Aligned_cols=257 Identities=11% Similarity=0.104 Sum_probs=165.8
Q ss_pred cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCC--CCCceeecCCCcccc
Q 000085 2030 TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIG--SSTPANASADKSRRR 2107 (2342)
Q Consensus 2030 ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpD--G~~Las~s~D~s~~~ 2107 (2342)
+...|.+|.+.|..|.|...|..|+|||.|..|.+||+..+.....+..+|...+....|-|. ...++..+.++..+.
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 345678999999999999999999999999999999999988888888888888877777763 345566666665442
Q ss_pred cc----C--CceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEEEEec---C-----CcEEEEEecCC
Q 000085 2108 RI----E--GPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRGRLIRRLVG---V-----DAHAVSLSSEG 2172 (2342)
Q Consensus 2108 ~i----~--~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTGklIrsL~g---h-----~vssLSfSpDG 2172 (2342)
.. + .....+..|.+.|.-++.-|+. ..+.|++.|+.+.-+|++++.....+.. + ....++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 11 1 2245567799999999999874 5688999999999999998765444332 1 13566777766
Q ss_pred c-EEEEEeCCCeEEEEEeCCc-------eeeeecC-----CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCC
Q 000085 2173 V-IMTWNKLQHTLSSFTLNGV-------LVARAKL-----PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNS 2239 (2342)
Q Consensus 2173 ~-IlVwdssdGsI~I~dlnG~-------~L~s~~~-----~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~ 2239 (2342)
. .+..+..+..+++|+...- .+..... .....|+|++|+.++.-+++.-.+-.+ +-
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I--------YL--- 362 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI--------YL--- 362 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce--------EE---
Confidence 5 5556666667777775311 1111111 123579999999766555544222110 00
Q ss_pred CCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEE-EecCCC--CCeEEEEE-ecCCCEEEEEeCCCcEEEEeC
Q 000085 2240 KQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHV-LKLGEG--QDITALAL-NKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2240 ~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~t-L~lgHs--~~ItsLaf-SPDG~~LaSGSsDGsIrVWDi 2315 (2342)
|.++.- .+.... .+ .++ ...+.. ++ ||. ..|.++-| -|...++++|+.=|.|.||+-
T Consensus 363 -------F~~~~~-~G~~p~-~~---s~~------~~~~k~vYK-GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 363 -------FNKSMG-DGSEPD-PS---SPR------EQYVKRVYK-GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK 423 (559)
T ss_pred -------eccccc-cCCCCC-CC---cch------hhccchhhc-ccccccccceeeeccCccceEEecCccceEEEEec
Confidence 000000 000000 00 000 011222 44 664 34667764 678899999999999999994
Q ss_pred C
Q 000085 2316 P 2316 (2342)
Q Consensus 2316 ~ 2316 (2342)
.
T Consensus 424 ~ 424 (559)
T KOG1334|consen 424 K 424 (559)
T ss_pred c
Confidence 3
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.61 E-value=2e-06 Score=102.67 Aligned_cols=217 Identities=13% Similarity=0.175 Sum_probs=136.3
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecC----Cc
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSD----GA 2028 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~----tg 2028 (2342)
+.+....+++.+.|.++|+|.... ....| |..... --..++++.+.++...|++|-..|++.-+.+. ..
T Consensus 32 l~~~e~gv~~~s~drtvrv~lkrd--s~q~w--psI~~~---mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm 104 (404)
T KOG1409|consen 32 LIPKEEGVISVSEDRTVRVWLKRD--SGQYW--PSIYHY---MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM 104 (404)
T ss_pred eccCCCCeEEccccceeeeEEecc--ccccC--chhhhh---CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc
Confidence 334445577899999999998654 23334 222111 12345679999999999999999999888654 34
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC-cc--
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-SR-- 2105 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~-- 2105 (2342)
...+....|...|..+-|+.....+++.+.|..+.---.+.+......... .......+... +...+...+ +.
T Consensus 105 ~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~--~~~t~~~~d~~--~~fvGd~~gqvt~l 180 (404)
T KOG1409|consen 105 TFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE--TPASALQFDAL--YAFVGDHSGQITML 180 (404)
T ss_pred chhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee--ccCCCCceeeE--EEEecccccceEEE
Confidence 456677789999999999998999999999987654444443322111000 00000011100 111111111 00
Q ss_pred --ccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE-EEEecCC--c----------EEEEEec
Q 000085 2106 --RRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLI-RRLVGVD--A----------HAVSLSS 2170 (2342)
Q Consensus 2106 --~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklI-rsL~gh~--v----------ssLSfSp 2170 (2342)
....-.++..+.+|.+.+++++|.+....+.+|..|..+.+||+--++-+ ..+.+|. + ..++...
T Consensus 181 r~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~e 260 (404)
T KOG1409|consen 181 KLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGE 260 (404)
T ss_pred EEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccC
Confidence 01223568889999999999999999999999999999999999654332 2233332 2 3445555
Q ss_pred CCcEEEEEeC
Q 000085 2171 EGVIMTWNKL 2180 (2342)
Q Consensus 2171 DG~IlVwdss 2180 (2342)
||.+.+|+..
T Consensus 261 dg~i~~w~mn 270 (404)
T KOG1409|consen 261 DGGIVVWNMN 270 (404)
T ss_pred CCeEEEEecc
Confidence 6666666543
No 254
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.60 E-value=2e-06 Score=102.41 Aligned_cols=268 Identities=16% Similarity=0.192 Sum_probs=167.2
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc-----cceecccCC------------CCeEEEEecCCCC--EEEEEeC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAK-----TLETASGHC------------APVTCLALSSDSN--FLVTGSQ 2058 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgk-----ll~tL~GHt------------~~VtcLAfSPDG~--~LaSGS~ 2058 (2342)
-+.+|.|..+|.+||+|..+|.|.++.-+... ....++.|. ..|..+.|.++++ .++....
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 35679999999999999999999999644221 223344453 4588899988754 5666778
Q ss_pred CCceEEEeccCCcccccc----ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe-cCCCCCeEEEEEecCCC
Q 000085 2059 DTTILLWRIHRAFTSRTG----TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL-RGHHREILCCCVSSDLG 2133 (2342)
Q Consensus 2059 DGTVrVWDl~tg~~i~t~----~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L-~GHs~~Vt~VafSPDg~ 2133 (2342)
|.+|++|.+......... .......+..+.. ...+..+.... ..+...+ .+|+-.|+++.++.|+.
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~------p~~~~~~~~ve---a~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL------PVEGRHDLEVE---ASPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeec------eeeccccceee---eeeeeeccccceeEeeeeeecCccc
Confidence 999999999764322211 0011111111110 01111111100 1122222 46889999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCe-E--EEEEecCC-------cEEEEEecC-CcEEEEEeCCCeEEEEEeCCcee--------
Q 000085 2134 VVVSCSDSSDLLLHSIRRGR-L--IRRLVGVD-------AHAVSLSSE-GVIMTWNKLQHTLSSFTLNGVLV-------- 2194 (2342)
Q Consensus 2134 lLaSGS~DGtIrIWDLrTGk-l--IrsL~gh~-------vssLSfSpD-G~IlVwdssdGsI~I~dlnG~~L-------- 2194 (2342)
.++|+. |=.|.+|++.--. . +-.++.+. ++...|+|. ..+++|.+..|+|++.++....+
T Consensus 178 t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 178 TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 888764 6789999986322 1 22233332 455667764 35677777788888877652111
Q ss_pred eeecCC--------CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe
Q 000085 2195 ARAKLP--------LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2195 ~s~~~~--------Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
....-+ --..|..+.|+++|+|+++-. . -+
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRD--y----------------------------------------lt 294 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD--Y----------------------------------------LT 294 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEec--c----------------------------------------ce
Confidence 110001 234788999999999999653 1 35
Q ss_pred EEEEEC-CCCeEEEEEecCCC------------C---CeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2267 ICFLDL-HTLKVFHVLKLGEG------------Q---DITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2267 IrIWDL-~Tgk~L~tL~lgHs------------~---~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|++||+ ...+++.+++ -|. . .-..++|+-++.+++||+..+.+++|+....
T Consensus 295 vk~wD~nme~~pv~t~~-vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 295 VKLWDLNMEAKPVETYP-VHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred eEEEeccccCCcceEEe-ehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 888888 3455555555 332 1 1245789999999999999999999995443
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=6.4e-06 Score=106.09 Aligned_cols=237 Identities=11% Similarity=0.019 Sum_probs=143.1
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCE--E-EEEeCCC--ceEEEeccCCccccccccCCCCCCccccccCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNF--L-VTGSQDT--TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIG 2092 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~--L-aSGS~DG--TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpD 2092 (2342)
..|.+.|.+++... .+..+...+..-+|||||+. + ++...++ .|.+.++.++.... ............|+||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--ILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--eecCCCCccceEECCC
Confidence 46777787765443 34445566778899999975 2 2444444 46666776654222 1223344556789999
Q ss_pred CCCceeecCC-C---ccc--ccc-----CCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEE--ECCC-CeEEEE
Q 000085 2093 SSTPANASAD-K---SRR--RRI-----EGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLH--SIRR-GRLIRR 2157 (2342)
Q Consensus 2093 G~~Las~s~D-~---s~~--~~i-----~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIW--DLrT-GklIrs 2157 (2342)
|+.++..... + ... ++. ........++.......+|+|||+.|+..+ .+|...+| ++.. +...+.
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 9988765421 1 111 221 122223323334456789999999877655 56655555 4432 233344
Q ss_pred EecC--CcEEEEEecCCcEEEEEeCC---CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcc
Q 000085 2158 LVGV--DAHAVSLSSEGVIMTWNKLQ---HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYD 2232 (2342)
Q Consensus 2158 L~gh--~vssLSfSpDG~IlVwdssd---GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d 2232 (2342)
+... .....+|||||+.+++.... ..|.+|++.+........ ....+....|+|||+.|+..+....
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g------- 393 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSN------- 393 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCC-------
Confidence 4332 34678999999988876543 368888887655443321 2346778999999999886542111
Q ss_pred cccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC
Q 000085 2233 NIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN 2298 (2342)
Q Consensus 2233 ~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG 2298 (2342)
...|+++|+.+++...... ..+.+...+|+|-.
T Consensus 394 -------------------------------~~~L~~vdl~~g~~~~Lt~--~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 394 -------------------------------ESELYLISLITKKTRKIVI--GSGEKRFPSWGAFP 426 (428)
T ss_pred -------------------------------CceEEEEECCCCCEEEeec--CCCcccCceecCCC
Confidence 3568999998877544333 34456777887743
No 256
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=4.2e-06 Score=101.43 Aligned_cols=213 Identities=13% Similarity=0.118 Sum_probs=149.5
Q ss_pred EEEEEEcCCcEEEEecCCcc----cceecccCCCCeEEEEecCCCC-EEEEEeCC--CceEEEeccCCccccccccCCCC
Q 000085 2010 IITGGHVDGSIKLLTSDGAK----TLETASGHCAPVTCLALSSDSN-FLVTGSQD--TTILLWRIHRAFTSRTGTIEPSS 2082 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgk----ll~tL~GHt~~VtcLAfSPDG~-~LaSGS~D--GTVrVWDl~tg~~i~t~~~~~~~ 2082 (2342)
.|++|-.+|.+.+|....+. .+..+..| ..+..+.-++... ++++|+.. ..+.|||+.+...+..-..
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN---- 191 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN---- 191 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC----
Confidence 56666789999999987442 22233333 3466666666544 55568988 8899999998533221100
Q ss_pred CCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCe-EEEEEe
Q 000085 2083 GMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLLHSIRRGR-LIRRLV 2159 (2342)
Q Consensus 2083 ~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIWDLrTGk-lIrsL~ 2159 (2342)
-|+. . ++ +. -.-.++++.|-+. ...+++++.-+.+++||.+.++ ++..+.
T Consensus 192 -------vpnD-~-------------L~-----Lr-VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd 244 (412)
T KOG3881|consen 192 -------VPND-R-------------LG-----LR-VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD 244 (412)
T ss_pred -------CCCc-c-------------cc-----ce-eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec
Confidence 0000 0 00 00 0124567778776 7889999999999999998764 555554
Q ss_pred c--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee-cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccc
Q 000085 2160 G--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA-KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQG 2236 (2342)
Q Consensus 2160 g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~-~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~ 2236 (2342)
. +.+.++...|+|+.++.+...+.+..|++++..+... ..+..+.|+++..+|.+.+++++|.
T Consensus 245 ~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GL-------------- 310 (412)
T KOG3881|consen 245 FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGL-------------- 310 (412)
T ss_pred cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecc--------------
Confidence 3 5688999999999999998899999999986555433 5557899999999999999998862
Q ss_pred cCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecC
Q 000085 2237 LNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2237 l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
|+.|+|+|+.+.++++... -...++++-+.++
T Consensus 311 ---------------------------DRyvRIhD~ktrkll~kvY--vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 311 ---------------------------DRYVRIHDIKTRKLLHKVY--VKSRLTFILLRDD 342 (412)
T ss_pred ---------------------------ceeEEEeecccchhhhhhh--hhccccEEEecCC
Confidence 7789999999987776654 3455677777554
No 257
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.54 E-value=9.6e-07 Score=105.23 Aligned_cols=244 Identities=14% Similarity=0.102 Sum_probs=174.0
Q ss_pred cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC-CccccccccCCCCCCccccccCCCCCceeecCCCccc--
Q 000085 2030 TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR-AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR-- 2106 (2342)
Q Consensus 2030 ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t-g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-- 2106 (2342)
.++.++||.+.|+....-|...-+++.+.|.+++||--.+ ++....+....+.++.++.+.++...+.++..++..-
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 4567899999999999999889999999999999996543 4444444455677788888888888887777665432
Q ss_pred -----cccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeC
Q 000085 2107 -----RRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKL 2180 (2342)
Q Consensus 2107 -----~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdss 2180 (2342)
+..-........|...|..+-|+-...++++.+.|..+.-+-.+.|..+....-.. ...+.+.-. +...+..
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~ 173 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDH 173 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEeccc
Confidence 22223455667899999999999999999999999888766666665443321100 000001001 2233334
Q ss_pred CCeEEEEEe--CCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCC
Q 000085 2181 QHTLSSFTL--NGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNN 2258 (2342)
Q Consensus 2181 dGsI~I~dl--nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~ 2258 (2342)
.|.+....+ ++-.+.....+|.+.++++.|.+....+.+|..
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~------------------------------------ 217 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS------------------------------------ 217 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc------------------------------------
Confidence 454444333 333344445569999999999999999998752
Q ss_pred CccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2259 RFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2259 ~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
|..+.+||+.-.+-+.-...+|...|..+..-+--+.|++++.||.|.+|+.+
T Consensus 218 -----d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 218 -----DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred -----cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 56789999976655555455899999999998888999999999999999954
No 258
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.54 E-value=8.3e-05 Score=92.97 Aligned_cols=258 Identities=14% Similarity=0.143 Sum_probs=152.9
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC----------CCceEEEeccCCccccccccCC------C
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ----------DTTILLWRIHRAFTSRTGTIEP------S 2081 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~----------DGTVrVWDl~tg~~i~t~~~~~------~ 2081 (2342)
++|.|.|..+++.+.++..-..+-- + +||||+.|+.+.. +..|.|||..+.+...++.... .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999998888765444332 4 9999998887655 7899999999987776653211 2
Q ss_pred CCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEE-EEEecCCCEEEEE--------eCCCcEEEEECC-C
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILC-CCVSSDLGVVVSC--------SDSSDLLLHSIR-R 2151 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~-VafSPDg~lLaSG--------S~DGtIrIWDLr-T 2151 (2342)
.....+++++||+.+.+...+.. ..+..+......+.. +.. |++..++.. +.||......+. +
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~------~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPS------PAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTK 177 (352)
T ss_pred CccceEEECCCCCEEEEecCCCC------CEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCC
Confidence 23447788999998877664411 011111111111111 111 333333333 233333332222 1
Q ss_pred CeE-EEE---EecCC----cEEEEEec-CCcEEEEEeCCCeEEEEEeCCceeee------ecC-----C-CCCCeEEEEE
Q 000085 2152 GRL-IRR---LVGVD----AHAVSLSS-EGVIMTWNKLQHTLSSFTLNGVLVAR------AKL-----P-LSGSIGCMEI 2210 (2342)
Q Consensus 2152 Gkl-Irs---L~gh~----vssLSfSp-DG~IlVwdssdGsI~I~dlnG~~L~s------~~~-----~-Hs~~ItsLaf 2210 (2342)
|+. ..+ +.... .+- .+++ ||+.+ |-...|.+.+.++.+..... ... . ..+.+.-+++
T Consensus 178 g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~-~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLV-WPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred CceEEeeeeeecCCccccccCC-ceEcCCCcEE-EEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 221 111 11100 001 3355 66544 44445999888864321111 000 0 2344455999
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeE
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDIT 2290 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~It 2290 (2342)
+++|+.+++....+. .|.+.. ..+.|.++|..+++.+..+..+ ..+.
T Consensus 256 ~~dg~~lyV~~~~~~--------~~thk~-----------------------~~~~V~ViD~~t~kvi~~i~vG--~~~~ 302 (352)
T TIGR02658 256 HRARDRIYLLADQRA--------KWTHKT-----------------------ASRFLFVVDAKTGKRLRKIELG--HEID 302 (352)
T ss_pred cCCCCEEEEEecCCc--------cccccC-----------------------CCCEEEEEECCCCeEEEEEeCC--Ccee
Confidence 999999887542211 011111 2468999999999999999854 4789
Q ss_pred EEEEecCCC-EEEEEe-CCCcEEEEeCCCCC
Q 000085 2291 ALALNKDNT-NLLVST-ADKQLIVFTDPALS 2319 (2342)
Q Consensus 2291 sLafSPDG~-~LaSGS-sDGsIrVWDi~sLs 2319 (2342)
.++++||++ +|++.. .++.|.|+|..+..
T Consensus 303 ~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 303 SINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred eEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 999999999 887665 68899999976663
No 259
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.53 E-value=1.8e-07 Score=114.31 Aligned_cols=181 Identities=12% Similarity=0.122 Sum_probs=144.2
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
+.-+.|-|..-+|++++..|.++--|+.+|+.+..+..-.+.+..++-+|-...+-+|...|+|.+|.....
T Consensus 212 v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-------- 283 (545)
T KOG1272|consen 212 VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-------- 283 (545)
T ss_pred hhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc--------
Confidence 345888998889999999999999999999999999888899999999999999999999999999987763
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL 2158 (2342)
.++..+.+|.++|.++++.++|.+++|.+.|..|+|||++.-..+.++
T Consensus 284 --------------------------------ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 284 --------------------------------EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred --------------------------------chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence 345556789999999999999999999999999999999988776666
Q ss_pred ec-CCcEEEEEecCCcEEEEEeCCCeEEEEEe--CCc-eeeeecCC--CCCCeEEEEEccCCCEEEEEe
Q 000085 2159 VG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTL--NGV-LVARAKLP--LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2159 ~g-h~vssLSfSpDG~IlVwdssdGsI~I~dl--nG~-~L~s~~~~--Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.. +....+++|..|-+.+. ....+.+|.- ++. ........ ..+.|..+.|.|-...|-+|.
T Consensus 332 ~tp~~a~~ls~SqkglLA~~--~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 332 RTPHPASNLSLSQKGLLALS--YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred ecCCCccccccccccceeee--cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 54 66788888888865432 2345667753 211 11111122 346899999999877776664
No 260
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=9e-07 Score=109.57 Aligned_cols=197 Identities=18% Similarity=0.169 Sum_probs=139.5
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCC--CEEEEEEcCCcEEEEecCCc-----
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDK--EIITGGHVDGSIKLLTSDGA----- 2028 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDG--klLASGS~DGsIrVWDl~tg----- 2028 (2342)
+|..+++|++|..+-||+.-. ....+..+.++...+.++.|-|.. +++++|..|..|+|+|++..
T Consensus 61 dG~lL~SGSDD~r~ivWd~~~--------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~ 132 (758)
T KOG1310|consen 61 DGELLASGSDDTRLIVWDPFE--------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM 132 (758)
T ss_pred CCCEEeecCCcceEEeecchh--------cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccccc
Confidence 578899999999999998532 122345667777777888888854 49999999999999999842
Q ss_pred -----ccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCC
Q 000085 2029 -----KTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASAD 2102 (2342)
Q Consensus 2029 -----kll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D 2102 (2342)
.....+..|++.|..++..|++ +.+.++|.||+++-+|++..... .|++...
T Consensus 133 d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c----------------~p~~~~~------ 190 (758)
T KOG1310|consen 133 DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC----------------NPDEDCP------ 190 (758)
T ss_pred ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC----------------Ccccccc------
Confidence 2345567899999999999998 88999999999999999873211 0111000
Q ss_pred CccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCC--------Ce----------EEEEEec-C-
Q 000085 2103 KSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRR--------GR----------LIRRLVG-V- 2161 (2342)
Q Consensus 2103 ~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrT--------Gk----------lIrsL~g-h- 2161 (2342)
..+..+...--...|+.++|. ..+++.|+.|-..++||.+. |. +++.+.. |
T Consensus 191 --------~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 191 --------SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL 262 (758)
T ss_pred --------HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence 000011111235578889986 56788999999999999542 11 2333321 1
Q ss_pred ------------CcEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2162 ------------DAHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2162 ------------~vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
..+.++|+|+|.-++.+.....|++|+++
T Consensus 263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 263 KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred cCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 13678999999988887777788888886
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.50 E-value=9.5e-06 Score=102.77 Aligned_cols=175 Identities=12% Similarity=0.138 Sum_probs=127.8
Q ss_pred CCCCEEEEEEcCCcEEEEecCCcccceeccc---CCCCeEEEEec--------------------CCCCEEEEEeCCCce
Q 000085 2006 HDKEIITGGHVDGSIKLLTSDGAKTLETASG---HCAPVTCLALS--------------------SDSNFLVTGSQDTTI 2062 (2342)
Q Consensus 2006 pDGklLASGS~DGsIrVWDl~tgkll~tL~G---Ht~~VtcLAfS--------------------PDG~~LaSGS~DGTV 2062 (2342)
|.+.++|....||.+++|+...++..+.+.. -++..+|..|. .|-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456889889999999999998876655432 22344455552 011123333333444
Q ss_pred EEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2063 LLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSS 2142 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG 2142 (2342)
.++++..++... ...-.+|.+.|+++.++.+...+.|++.|+
T Consensus 83 ~~ys~~~g~it~--------------------------------------~~st~~h~~~v~~~~~~~~~~ciyS~~ad~ 124 (541)
T KOG4547|consen 83 LLYSVAGGEITA--------------------------------------KLSTDKHYGNVNEILDAQRLGCIYSVGADL 124 (541)
T ss_pred EEEEecCCeEEE--------------------------------------EEecCCCCCcceeeecccccCceEecCCce
Confidence 444433321110 011246999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccC-----CC
Q 000085 2143 DLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLD-----GH 2215 (2342)
Q Consensus 2143 tIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPD-----Gk 2215 (2342)
.+..|+...++.++.+.... ...++++|||.+++.+ .++|.+|+++.+.+...+.+|.++|+++.|.-+ |.
T Consensus 125 ~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~ 202 (541)
T KOG4547|consen 125 KVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGK 202 (541)
T ss_pred eEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec--cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccc
Confidence 99999999999998887643 6889999999998876 468999999988888888889999999999877 77
Q ss_pred EEEEE
Q 000085 2216 SALIG 2220 (2342)
Q Consensus 2216 ~LaSG 2220 (2342)
+++++
T Consensus 203 ~vLss 207 (541)
T KOG4547|consen 203 YVLSS 207 (541)
T ss_pred eeeec
Confidence 77765
No 262
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=5.4e-06 Score=103.79 Aligned_cols=240 Identities=15% Similarity=0.112 Sum_probs=150.5
Q ss_pred cCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC-Cce
Q 000085 2036 GHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE-GPI 2113 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~-~~l 2113 (2342)
.|...-+.+..+|||+|+ +||..--.|++||+.+....... ......|.....+-|-...+....|..+..... +.-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-hlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-HLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-cccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 477888999999999986 56777889999999874322111 111122333333333333333223322211110 000
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
..+. -...-..++++.-..-++.++....|+-+++..|+.+..+... ++.++.+++...+++++..+|.+..|+...
T Consensus 128 y~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 128 YRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 0000 0111233444432333455555568999999999999887654 578888999889999999999999998753
Q ss_pred ceee-eec-----CCCCC-----CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCc
Q 000085 2192 VLVA-RAK-----LPLSG-----SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRF 2260 (2342)
Q Consensus 2192 ~~L~-s~~-----~~Hs~-----~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~i 2260 (2342)
+... ... ..|.+ .|+++.|+.||-.+++|+.
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts-------------------------------------- 248 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS-------------------------------------- 248 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc--------------------------------------
Confidence 2211 111 11333 4999999999999998863
Q ss_pred cCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCC
Q 000085 2261 DFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN-TNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2261 as~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG-~~LaSGSsDGsIrVWDi~sL 2318 (2342)
+|.|.|||+++.+++..-..+-.-+|..+.|.+.+ +--++......++|||-...
T Consensus 249 ---~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 249 ---TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTG 304 (703)
T ss_pred ---CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccC
Confidence 57799999999998887764556789999997753 22334445568999995433
No 263
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.43 E-value=7.3e-05 Score=105.59 Aligned_cols=250 Identities=14% Similarity=0.103 Sum_probs=150.0
Q ss_pred EEEcCC-CCEEEEEEcCCcEEEEecCCcccceeccc--------------CCCCeEEEEecCCCCEEEEE-eCCCceEEE
Q 000085 2002 VSITHD-KEIITGGHVDGSIKLLTSDGAKTLETASG--------------HCAPVTCLALSSDSNFLVTG-SQDTTILLW 2065 (2342)
Q Consensus 2002 VafSpD-GklLASGS~DGsIrVWDl~tgkll~tL~G--------------Ht~~VtcLAfSPDG~~LaSG-S~DGTVrVW 2065 (2342)
++++++ ++++++-+.++.|++||..+ +.+..+.+ +-..-..++++++++.|+.+ ...+.|+++
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 677764 66788888889999999764 33332221 11235788999988866554 445789999
Q ss_pred eccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcE
Q 000085 2066 RIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDL 2144 (2342)
Q Consensus 2066 Dl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtI 2144 (2342)
|..++. +.++... +.... ..++ +. ...... -...++++|+| ++.++++.+.++.|
T Consensus 652 d~~~~~-V~tlag~---G~~g~--~~~g---------g~-----~~~~~~----ln~P~gVa~dp~~g~LyVad~~~~~I 707 (1057)
T PLN02919 652 DFVNET-VRTLAGN---GTKGS--DYQG---------GK-----KGTSQV----LNSPWDVCFEPVNEKVYIAMAGQHQI 707 (1057)
T ss_pred ecCCCE-EEEEecc---CcccC--CCCC---------Ch-----hhhHhh----cCCCeEEEEecCCCeEEEEECCCCeE
Confidence 987642 1111000 00000 0000 00 000000 12235889999 56667788888999
Q ss_pred EEEECCCCeEEEEEec-----------------CCcEEEEEecCCc-EEEEEeCCCeEEEEEeCCceeeeec--------
Q 000085 2145 LLHSIRRGRLIRRLVG-----------------VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVLVARAK-------- 2198 (2342)
Q Consensus 2145 rIWDLrTGklIrsL~g-----------------h~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~L~s~~-------- 2198 (2342)
++||..++... .+.+ .....++++++|. +++.+..++.|++|++.+.......
T Consensus 708 ~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~ 786 (1057)
T PLN02919 708 WEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSD 786 (1057)
T ss_pred EEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCc
Confidence 99999877543 2211 1135689999987 7778888899999998632211000
Q ss_pred ----CC---------CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCC
Q 000085 2199 ----LP---------LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSP 2265 (2342)
Q Consensus 2199 ----~~---------Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DG 2265 (2342)
.+ .-....+++++++|..+++. ..++
T Consensus 787 ~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVAD-----------------------------------------s~N~ 825 (1057)
T PLN02919 787 NLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVAD-----------------------------------------SYNH 825 (1057)
T ss_pred ccccccCCCCchhhhhccCCceeeEeCCCcEEEEE-----------------------------------------CCCC
Confidence 00 00112345555555433322 1367
Q ss_pred eEEEEECCCCeEEEEEecC------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2266 SICFLDLHTLKVFHVLKLG------------EGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2266 sIrIWDL~Tgk~L~tL~lg------------Hs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.|++||..++........+ +-.....|+++++|+.+++-+.++.|++||..+.
T Consensus 826 rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 826 KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 8999999887765433211 1125788999999998888899999999997554
No 264
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=4.6e-06 Score=105.37 Aligned_cols=219 Identities=12% Similarity=0.074 Sum_probs=147.8
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcc---------------cceecccCCCCeEEEEecCCCCEEEEEeCCCceEE
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAK---------------TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILL 2064 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgk---------------ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrV 2064 (2342)
.|+.|+....+||+|+.||.++|..+.+.. .-+++.||.+.|.-+.|+.+.+.|-|...+|.|.|
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV 97 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV 97 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence 579999999999999999999999775421 12578999999999999999999999999999999
Q ss_pred EeccCCcccccc-ccCCCCCCccccccCCCCCceeecCCCcccc-ccCCc---eEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2065 WRIHRAFTSRTG-TIEPSSGMGTPGNSIGSSTPANASADKSRRR-RIEGP---IHVLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2065 WDl~tg~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s~~~-~i~~~---l~~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
|-+-.+.-.... .....+.|.+++|..||..+.....|+.... .+.+. -..++| .....+.|++|...++.+-
T Consensus 98 WmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ 175 (1189)
T KOG2041|consen 98 WMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKK 175 (1189)
T ss_pred EeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhh
Confidence 999887644443 3344556788999999998877666654331 11100 011222 1234688999999988888
Q ss_pred CCCcEEEEECCCC-------eEEEEEe------cCCcEEEEE--------ecCCcEEEEEeCCCeEEEEEeCC-ceeeee
Q 000085 2140 DSSDLLLHSIRRG-------RLIRRLV------GVDAHAVSL--------SSEGVIMTWNKLQHTLSSFTLNG-VLVARA 2197 (2342)
Q Consensus 2140 ~DGtIrIWDLrTG-------klIrsL~------gh~vssLSf--------SpDG~IlVwdssdGsI~I~dlnG-~~L~s~ 2197 (2342)
..|.+.++|.... .+.-... ++.+..+.| -||...++....+|.+++..-.. ......
T Consensus 176 ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~ 255 (1189)
T KOG2041|consen 176 ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV 255 (1189)
T ss_pred cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE
Confidence 9999999996532 1111111 122222222 34666666666677665544321 111111
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2198 KLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2198 ~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
...-.|....|+++|..|++++.
T Consensus 256 --dtgm~~vgakWnh~G~vLAvcG~ 278 (1189)
T KOG2041|consen 256 --DTGMKIVGAKWNHNGAVLAVCGN 278 (1189)
T ss_pred --ecccEeecceecCCCcEEEEccC
Confidence 12357888999999999998874
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=1.4e-05 Score=102.91 Aligned_cols=210 Identities=15% Similarity=0.035 Sum_probs=127.3
Q ss_pred EEEcCCCCE--E-EEEEcCC--cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC-----CCceEEEeccCCc
Q 000085 2002 VSITHDKEI--I-TGGHVDG--SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ-----DTTILLWRIHRAF 2071 (2342)
Q Consensus 2002 VafSpDGkl--L-ASGS~DG--sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~-----DGTVrVWDl~tg~ 2071 (2342)
-.|||||+. + ++...+| .|++.++.+|+..+ +....+.....+|||||+.|+..+. |..+.+|++..+.
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~ 268 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA 268 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC
Confidence 589999974 2 2443444 57777888775433 2223444567899999998886553 3344557766531
Q ss_pred --cccccccCCCCCCccccccCCCCCceeecC-CCc-cccc--c---CCceEEecCCCCCeEEEEEecCCCEEEEEeCC-
Q 000085 2072 --TSRTGTIEPSSGMGTPGNSIGSSTPANASA-DKS-RRRR--I---EGPIHVLRGHHREILCCCVSSDLGVVVSCSDS- 2141 (2342)
Q Consensus 2072 --~i~t~~~~~~~~V~svs~SpDG~~Las~s~-D~s-~~~~--i---~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D- 2141 (2342)
.................|+|||+.++.... ++. ..|. . ......+..+...+....|+|||+.|+..+.+
T Consensus 269 ~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 269 IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence 111122122233456789999998866543 221 2222 1 12244455555677889999999988876543
Q ss_pred --CcEEEEECCCCeEEEEEec-CCcEEEEEecCCcEEEEEeCC---CeEEEEEeCCceeeeecCCCCCCeEEEEEccC
Q 000085 2142 --SDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQ---HTLSSFTLNGVLVARAKLPLSGSIGCMEISLD 2213 (2342)
Q Consensus 2142 --GtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~IlVwdssd---GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPD 2213 (2342)
..|.+||+.+++....... ......+|+|||+.+++.... ..++++++.+....... ...+.+...+|+|-
T Consensus 349 g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 349 GVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred CCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCC
Confidence 3699999998876543333 235678999999988775432 45777777664433222 13344556666654
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.38 E-value=6.6e-06 Score=104.16 Aligned_cols=185 Identities=12% Similarity=0.204 Sum_probs=134.6
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEE--------------------cCCCCEEEEEEcC
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSI--------------------THDKEIITGGHVD 2017 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~Vaf--------------------SpDGklLASGS~D 2017 (2342)
.+.+...+|+.+|+|+...+....++ ......... +.+..| +.|...++-|...
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~--~p~~~~s~t----~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEF--APIASLSGT----CTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeee--ccchhccCc----ceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 44566778899999986653222222 111111111 122222 2344588999999
Q ss_pred CcEEEEecCCcccceecc--cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2018 GSIKLLTSDGAKTLETAS--GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~--GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
|.|.+|++..|+....+. +|.+.|+++.++.+-..|.|++.|+.+..|+.....
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~------------------------ 135 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV------------------------ 135 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce------------------------
Confidence 999999999999887775 599999999999999999999999999999998742
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecC--
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSE-- 2171 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpD-- 2171 (2342)
.+....+....+.+++++||+..+++++ +.|++||+.+++.+.+|.+|. ++.++|.-+
T Consensus 136 ----------------~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~ 197 (541)
T KOG4547|consen 136 ----------------IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLID 197 (541)
T ss_pred ----------------eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEecc
Confidence 2234456667788999999999999888 589999999999999999986 667777655
Q ss_pred ---CcEEEEEe-CCCeEEEEEeC
Q 000085 2172 ---GVIMTWNK-LQHTLSSFTLN 2190 (2342)
Q Consensus 2172 ---G~IlVwds-sdGsI~I~dln 2190 (2342)
|..++... ...-+.+|-+.
T Consensus 198 g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 198 GIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ccccceeeeccccccceeEEEEE
Confidence 55555442 22335556554
No 267
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.37 E-value=6.9e-06 Score=108.95 Aligned_cols=184 Identities=17% Similarity=0.183 Sum_probs=141.4
Q ss_pred EcCCCCEEEEEEcCCcEEEEecCCcccceecccCCC----CeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2004 ITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCA----PVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2004 fSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~----~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
+.-+.+.++.++.++.+-+||...+.....+..... ...-+-++++.-++++|+--+.|.+|+.....
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-------- 166 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-------- 166 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC--------
Confidence 445667888888999999999988766655543221 12223456677899999999999999987310
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE-EE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR-RL 2158 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr-sL 2158 (2342)
.+. .+.||.+.|..+.++-||.+++|.|.|.++++|++.+++... +.
T Consensus 167 -------------------------------~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~ 214 (967)
T KOG0974|consen 167 -------------------------------KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTG 214 (967)
T ss_pred -------------------------------Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccc
Confidence 111 478999999999999999999999999999999999988776 55
Q ss_pred ecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC
Q 000085 2159 VGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229 (2342)
Q Consensus 2159 ~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~ 2229 (2342)
-+|. +..+++.++ .++....+.+.++|..++..+..........|+.++..++...++|++.|+....+
T Consensus 215 fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 215 FGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred ccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhh
Confidence 5565 567888888 45555678899999998877773332235689999999999999999999885433
No 268
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.35 E-value=7.5e-05 Score=94.34 Aligned_cols=291 Identities=15% Similarity=0.133 Sum_probs=148.0
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
+..+..++.++.+..++..+|. ..|.+.-. ..+.. ... .++..++.++.+|.++.+|..+|+.+.....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~--~~W~~~~~-----~~~~~--~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 133 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGK--RLWRVDLD-----ERLSG--GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKL 133 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCc--EeeeecCC-----CCccc--ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeecc
Confidence 4455556666778888866643 34533211 01111 122 2466777888899999999999988765442
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCC----CCccccccCCCCCceeecC----------C
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSS----GMGTPGNSIGSSTPANASA----------D 2102 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~----~V~svs~SpDG~~Las~s~----------D 2102 (2342)
. +.+.+.-.. .+..++.++.|+.+..||..+++...+....... ....... .++ .+..+.. +
T Consensus 134 ~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~-~v~~~~~~g~v~ald~~t 209 (377)
T TIGR03300 134 S-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADG-GVLVGFAGGKLVALDLQT 209 (377)
T ss_pred C-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECC-EEEEECCCCEEEEEEccC
Confidence 2 222221111 3457777888999999999988655443111100 0000001 111 2222222 2
Q ss_pred CccccccCCceEEecCCCC-----Ce-EEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEE
Q 000085 2103 KSRRRRIEGPIHVLRGHHR-----EI-LCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMT 2176 (2342)
Q Consensus 2103 ~s~~~~i~~~l~~L~GHs~-----~V-t~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlV 2176 (2342)
+...|.... ..-.+... .+ .+..+ .+..++.++.+|.++.||..+|+.+...........+ .++..++
T Consensus 210 G~~~W~~~~--~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vy 283 (377)
T TIGR03300 210 GQPLWEQRV--ALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPA--VDDNRLY 283 (377)
T ss_pred CCEeeeecc--ccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCce--EeCCEEE
Confidence 222222110 00000000 00 01111 3567888889999999999999887765422211111 1222223
Q ss_pred EEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccccccccc
Q 000085 2177 WNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSV 2255 (2342)
Q Consensus 2177 wdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ 2255 (2342)
....+|.++.++.. |..+-...........+..+ .+..+++++
T Consensus 284 v~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~---------------------------------- 327 (377)
T TIGR03300 284 VTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD---------------------------------- 327 (377)
T ss_pred EECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe----------------------------------
Confidence 33345555555553 32221110000111111122 244555553
Q ss_pred CCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2256 DNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVF 2313 (2342)
Q Consensus 2256 ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVW 2313 (2342)
.+|.|+++|..+++.+..+. .+...+..--...++ .|+.++.||.|+.|
T Consensus 328 -------~~G~l~~~d~~tG~~~~~~~-~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 328 -------FEGYLHWLSREDGSFVARLK-TDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred -------CCCEEEEEECCCCCEEEEEE-cCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 26789999999999999888 334333222222233 58899999999876
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=0.00036 Score=85.12 Aligned_cols=260 Identities=15% Similarity=0.142 Sum_probs=166.0
Q ss_pred CCcEEEEecCCc--cc-ceecccCCCCeEEEEecCCCCEEEEEeCC---CceEEEeccC--Ccccccc-ccCCCCCCccc
Q 000085 2017 DGSIKLLTSDGA--KT-LETASGHCAPVTCLALSSDSNFLVTGSQD---TTILLWRIHR--AFTSRTG-TIEPSSGMGTP 2087 (2342)
Q Consensus 2017 DGsIrVWDl~tg--kl-l~tL~GHt~~VtcLAfSPDG~~LaSGS~D---GTVrVWDl~t--g~~i~t~-~~~~~~~V~sv 2087 (2342)
+.-|++|++++. +. ...+-.+.+.++-|+|+|++++|+++-.+ |.|..+.++. |.....- ......+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 567999998743 22 12234577889999999999999998654 7788887775 3221111 11222334778
Q ss_pred cccCCCCCceeecCCCc--cccccC-----CceEEecCCCCC----------eEEEEEecCCCEEEEEeC-CCcEEEEEC
Q 000085 2088 GNSIGSSTPANASADKS--RRRRIE-----GPIHVLRGHHRE----------ILCCCVSSDLGVVVSCSD-SSDLLLHSI 2149 (2342)
Q Consensus 2088 s~SpDG~~Las~s~D~s--~~~~i~-----~~l~~L~GHs~~----------Vt~VafSPDg~lLaSGS~-DGtIrIWDL 2149 (2342)
+++++|+++.+...... ....+. ........|.+. +.+..|.|++++|++++. --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 89999998876654422 222111 111122234444 888999999999988864 237899999
Q ss_pred CCCeEEEEE-----ecCCcEEEEEecCCcEEE-EEeCCCeEEEEEeCC--ceeeeec--------CCCCCCeEEEEEccC
Q 000085 2150 RRGRLIRRL-----VGVDAHAVSLSSEGVIMT-WNKLQHTLSSFTLNG--VLVARAK--------LPLSGSIGCMEISLD 2213 (2342)
Q Consensus 2150 rTGklIrsL-----~gh~vssLSfSpDG~IlV-wdssdGsI~I~dlnG--~~L~s~~--------~~Hs~~ItsLafSPD 2213 (2342)
..|.+...- .+.+.+.+.|+|+|++.. ..--+++|.+|..++ ..+.... +.-..+..+|.+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 987654322 234578999999998754 344567888888865 2322221 113457788999999
Q ss_pred CCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC--CCe--EEEEEecCCCCCe
Q 000085 2214 GHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH--TLK--VFHVLKLGEGQDI 2289 (2342)
Q Consensus 2214 Gk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~--Tgk--~L~tL~lgHs~~I 2289 (2342)
|++|.+.- .+. .+|.++.+. +++ .+.... .++...
T Consensus 255 GrFLYasN-Rg~---------------------------------------dsI~~f~V~~~~g~L~~~~~~~-teg~~P 293 (346)
T COG2706 255 GRFLYASN-RGH---------------------------------------DSIAVFSVDPDGGKLELVGITP-TEGQFP 293 (346)
T ss_pred CCEEEEec-CCC---------------------------------------CeEEEEEEcCCCCEEEEEEEec-cCCcCC
Confidence 99999662 111 134444432 222 122222 455567
Q ss_pred EEEEEecCCCEEEEEeCC-CcEEEEeCCC
Q 000085 2290 TALALNKDNTNLLVSTAD-KQLIVFTDPA 2317 (2342)
Q Consensus 2290 tsLafSPDG~~LaSGSsD-GsIrVWDi~s 2317 (2342)
+.+.|+++|++|++++.| ..|.||..+.
T Consensus 294 R~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 294 RDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred ccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 899999999999998765 4688888543
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=4e-05 Score=95.96 Aligned_cols=254 Identities=11% Similarity=0.074 Sum_probs=156.6
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEc-----------CCcEEEE
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHV-----------DGSIKLL 2023 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~-----------DGsIrVW 2023 (2342)
|.|.++++--.. -|.+|-|+. +.+...|...++ ..+.|||..++|++-+. ...++||
T Consensus 220 P~GTYL~t~Hk~-GI~lWGG~~--------f~r~~RF~Hp~V---q~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 220 PKGTYLVTFHKQ-GIALWGGES--------FDRIQRFYHPGV---QFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred CCceEEEEEecc-ceeeecCcc--------HHHHHhccCCCc---eeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 456666654332 366787654 223333333344 44999999999998652 2579999
Q ss_pred ecCCcccceeccc--CCCCeE-EEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeec
Q 000085 2024 TSDGAKTLETASG--HCAPVT-CLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANAS 2100 (2342)
Q Consensus 2024 Dl~tgkll~tL~G--Ht~~Vt-cLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s 2100 (2342)
|+.+|...+.+.. ....++ -..||.|++|++--.. .+|.|++....... ....-...++....|+|.++.+|.-.
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~ll-d~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLL-DKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeee-cccccCCccccCcccCCCcceEEEEc
Confidence 9999998887765 222333 3589999999987665 57888887663221 11223455677777888777665433
Q ss_pred CCCc-----------------------------cccccCC-----------------c-----eEEec---------CCC
Q 000085 2101 ADKS-----------------------------RRRRIEG-----------------P-----IHVLR---------GHH 2120 (2342)
Q Consensus 2101 ~D~s-----------------------------~~~~i~~-----------------~-----l~~L~---------GHs 2120 (2342)
.... ..|...+ + +..+. .-.
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk 445 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK 445 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence 2200 0011100 0 00000 113
Q ss_pred CCeEEEEEecCCCEEEEEeC---CCcEEEEECCC----CeEEEEEecCCcEEEEEecCCcEEEEEe---CCCeEEEEEeC
Q 000085 2121 REILCCCVSSDLGVVVSCSD---SSDLLLHSIRR----GRLIRRLVGVDAHAVSLSSEGVIMTWNK---LQHTLSSFTLN 2190 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS~---DGtIrIWDLrT----GklIrsL~gh~vssLSfSpDG~IlVwds---sdGsI~I~dln 2190 (2342)
..|...+|-|.|+.+++-+. ..++.+|-+.+ -+++..+.....+.+.|+|.|.+++... ..|.+..|+..
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 45677888999987765543 35788888773 2345555555578899999999887763 45788888876
Q ss_pred CceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2191 GVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2191 G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
-..+.....+.....+.+.|.|.|+|+++++.
T Consensus 526 ~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 526 YADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred hhhhhhccCccccccccceECCCCCEEEEeee
Confidence 32222222222245678999999999999974
No 271
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.25 E-value=0.0011 Score=81.11 Aligned_cols=222 Identities=9% Similarity=0.092 Sum_probs=143.5
Q ss_pred ceeEEEEEcCCCCEEEEEEc---CCcEEEEecCC--cccc----eecccCCCCeEEEEecCCCCEEEEEeC-CCceEEEe
Q 000085 1997 RSSAVVSITHDKEIITGGHV---DGSIKLLTSDG--AKTL----ETASGHCAPVTCLALSSDSNFLVTGSQ-DTTILLWR 2066 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~---DGsIrVWDl~t--gkll----~tL~GHt~~VtcLAfSPDG~~LaSGS~-DGTVrVWD 2066 (2342)
...+-++|+|+++.|.++.. +|.|-.|.++. |++. ..+.|+ +-+-++++++|++|++++. -|.|.++-
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC--CCeEEEECCCCCEEEEEEccCceEEEEE
Confidence 34566999999998887764 46777777764 5432 123333 3388999999999999875 47899998
Q ss_pred ccC-Ccccccc-ccCCCCC----------CccccccCCCCCceeec--CCCccccccC-Cc-----eEEecCCCCCeEEE
Q 000085 2067 IHR-AFTSRTG-TIEPSSG----------MGTPGNSIGSSTPANAS--ADKSRRRRIE-GP-----IHVLRGHHREILCC 2126 (2342)
Q Consensus 2067 l~t-g~~i~t~-~~~~~~~----------V~svs~SpDG~~Las~s--~D~s~~~~i~-~~-----l~~L~GHs~~Vt~V 2126 (2342)
+.. |...... ...+... +.+..+.|+++++++.. .|.+..++.. +. ...+ .-...-+.+
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi 196 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHI 196 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceE
Confidence 865 3222211 1222222 66778899999886654 3444333321 11 1111 234556889
Q ss_pred EEecCCCEEEEEe-CCCcEEEEECCCC-e---EEEEEec--------CCcEEEEEecCCcEEEEEeCC-CeEEEEEeC--
Q 000085 2127 CVSSDLGVVVSCS-DSSDLLLHSIRRG-R---LIRRLVG--------VDAHAVSLSSEGVIMTWNKLQ-HTLSSFTLN-- 2190 (2342)
Q Consensus 2127 afSPDg~lLaSGS-~DGtIrIWDLrTG-k---lIrsL~g--------h~vssLSfSpDG~IlVwdssd-GsI~I~dln-- 2190 (2342)
.|+|++++....+ .+++|.+|..... . .++++.. .....+.+++||+++...-+. ..|.+|.++
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 9999999987655 6999999998773 2 2333321 125678899999988766443 478888875
Q ss_pred CceeeeecC--CCCCCeEEEEEccCCCEEEEEe
Q 000085 2191 GVLVARAKL--PLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2191 G~~L~s~~~--~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+..+..... .+........|+++|++|+++.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence 333332221 2444578899999999999886
No 272
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.24 E-value=0.00014 Score=86.50 Aligned_cols=188 Identities=13% Similarity=0.080 Sum_probs=105.6
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---------cEEEEEecCC-------cEEEEEeCCCeEE
Q 000085 2122 EILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD---------AHAVSLSSEG-------VIMTWNKLQHTLS 2185 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~---------vssLSfSpDG-------~IlVwdssdGsI~ 2185 (2342)
.-.-++||||+..+|.+...|+|+++|+.. ..+..+.... +..+.|-.-. .+++.+ ..|.++
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~-Y~G~L~ 122 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN-YRGQLR 122 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEe-ccceee
Confidence 456899999999999999999999999864 4444443311 2222232211 222222 345555
Q ss_pred EEEeC-C-----ceeeeecCC--CCCCeEEEEEccCCCEEEEEeCCCCCCCCC-----cccccccCCCCCCccc-ccccc
Q 000085 2186 SFTLN-G-----VLVARAKLP--LSGSIGCMEISLDGHSALIGVNSSSTNNGS-----YDNIQGLNSKQSGTED-FDLAS 2251 (2342)
Q Consensus 2186 I~dln-G-----~~L~s~~~~--Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i-----~d~Lw~l~~~~~~~ia-Fspd~ 2251 (2342)
-|-+. | +......+. +...|+++.++|..+.|++||.....+... ...-|++-+....... ...+.
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~ 202 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED 202 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc
Confidence 55442 1 111111111 467999999999999999887433322111 1223333332211110 00000
Q ss_pred ccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2252 DQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2252 ~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
. +.....+-.+|.+-+.+... ........|..|..||||+.|++...+|.|.+|++|++.
T Consensus 203 ~-------~~~~~~~~~~~~~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 203 D-------ITASSKRRGLLRIPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred c-------ccccccccceeeccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 0 00001123344444433222 111345679999999999999999999999999999996
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.23 E-value=0.00026 Score=100.17 Aligned_cols=196 Identities=11% Similarity=0.085 Sum_probs=121.5
Q ss_pred eEEEEEcCCCCEE-EEEEcCCcEEEEecCCcccceeccc----------C-------CCCeEEEEecC-CCCEEEEEeCC
Q 000085 1999 SAVVSITHDKEII-TGGHVDGSIKLLTSDGAKTLETASG----------H-------CAPVTCLALSS-DSNFLVTGSQD 2059 (2342)
Q Consensus 1999 vt~VafSpDGklL-ASGS~DGsIrVWDl~tgkll~tL~G----------H-------t~~VtcLAfSP-DG~~LaSGS~D 2059 (2342)
...++++++++.| ++-...+.|+++|..++. +.++.+ . -..-++++++| ++..+++.+.+
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 3458899988754 444556789999987654 222211 0 11236799999 56677888889
Q ss_pred CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCC-EEEEE
Q 000085 2060 TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLG-VVVSC 2138 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~-lLaSG 2138 (2342)
+.|++||..++... . +..+|.... .++ ... ....-...+.++|+|+++ ++++-
T Consensus 705 ~~I~v~d~~~g~v~-~-------------~~G~G~~~~---~~g--------~~~-~~~~~~~P~GIavspdG~~LYVAD 758 (1057)
T PLN02919 705 HQIWEYNISDGVTR-V-------------FSGDGYERN---LNG--------SSG-TSTSFAQPSGISLSPDLKELYIAD 758 (1057)
T ss_pred CeEEEEECCCCeEE-E-------------EecCCcccc---CCC--------Ccc-ccccccCccEEEEeCCCCEEEEEE
Confidence 99999998775321 1 111110000 000 000 001123467899999988 45566
Q ss_pred eCCCcEEEEECCCCeEEEEEec-----------------------CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee
Q 000085 2139 SDSSDLLLHSIRRGRLIRRLVG-----------------------VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA 2195 (2342)
Q Consensus 2139 S~DGtIrIWDLrTGklIrsL~g-----------------------h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~ 2195 (2342)
+.++.|++||+.++.......+ .....++++++|.+++.+..++.|++|+..+..+.
T Consensus 759 s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 759 SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 6789999999987653211100 01357889999999999999999999998765443
Q ss_pred eecC-------------CCCCCeEEEEEccCCCEEEEEe
Q 000085 2196 RAKL-------------PLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2196 s~~~-------------~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
...- ..-.....|+++++|+.+++-+
T Consensus 839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence 2211 0123577889999998666543
No 274
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.22 E-value=0.00074 Score=84.86 Aligned_cols=228 Identities=16% Similarity=0.183 Sum_probs=145.5
Q ss_pred EEEEEcC----CcEEEEec--CCcccc--eecccCCCCeEEEEecCCCCEEEEEeC----CCceEEEeccCCc-cccccc
Q 000085 2011 ITGGHVD----GSIKLLTS--DGAKTL--ETASGHCAPVTCLALSSDSNFLVTGSQ----DTTILLWRIHRAF-TSRTGT 2077 (2342)
Q Consensus 2011 LASGS~D----GsIrVWDl--~tgkll--~tL~GHt~~VtcLAfSPDG~~LaSGS~----DGTVrVWDl~tg~-~i~t~~ 2077 (2342)
++.|+++ +.|++|++ +++++. ..+. -......++++|++++|+++.. ++.|..|++.... .+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L---- 76 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL---- 76 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE----
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee----
Confidence 4455555 68999988 344332 2222 2344577899999999999877 4688888876531 00
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CeEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIRR-GRLI 2155 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrT-GklI 2155 (2342)
..+............++++|++++++++. .+|+|.++++.. |...
T Consensus 77 ---------------------------------~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~ 123 (345)
T PF10282_consen 77 ---------------------------------TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLG 123 (345)
T ss_dssp ---------------------------------EEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEE
T ss_pred ---------------------------------EEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccc
Confidence 01111221234556789999999988876 589999999987 5443
Q ss_pred EE---Ee------------cCCcEEEEEecCCcEEE-EEeCCCeEEEEEeCCce--e---eeecCCCCCCeEEEEEccCC
Q 000085 2156 RR---LV------------GVDAHAVSLSSEGVIMT-WNKLQHTLSSFTLNGVL--V---ARAKLPLSGSIGCMEISLDG 2214 (2342)
Q Consensus 2156 rs---L~------------gh~vssLSfSpDG~IlV-wdssdGsI~I~dlnG~~--L---~s~~~~Hs~~ItsLafSPDG 2214 (2342)
.. +. ....+.+.++|||+.++ .+.....|.+|+++... + .....+.......++|+|+|
T Consensus 124 ~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg 203 (345)
T PF10282_consen 124 EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDG 203 (345)
T ss_dssp EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTS
T ss_pred eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCc
Confidence 32 21 11257899999998554 46666789999996432 2 22233466778999999999
Q ss_pred CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC--CCe--EEEEEec---CC--
Q 000085 2215 HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH--TLK--VFHVLKL---GE-- 2285 (2342)
Q Consensus 2215 k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~--Tgk--~L~tL~l---gH-- 2285 (2342)
+++++... .++.|.++++. ++. .+..+.. +.
T Consensus 204 ~~~Yv~~e----------------------------------------~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 204 KYAYVVNE----------------------------------------LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp SEEEEEET----------------------------------------TTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred CEEEEecC----------------------------------------CCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence 99987642 14567777766 332 2333321 11
Q ss_pred CCCeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 000085 2286 GQDITALALNKDNTNLLVST-ADKQLIVFTDP 2316 (2342)
Q Consensus 2286 s~~ItsLafSPDG~~LaSGS-sDGsIrVWDi~ 2316 (2342)
......|+++|||++|+++. .++.|.+|++.
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred cCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 12578899999999998775 56789999973
No 275
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.22 E-value=0.00068 Score=85.02 Aligned_cols=234 Identities=9% Similarity=0.023 Sum_probs=141.8
Q ss_pred EcCCCCEEEEEE----------cCCcEEEEecCCcccceecccCC-------CCeEEEEecCCCCEEEEEe-C-CCceEE
Q 000085 2004 ITHDKEIITGGH----------VDGSIKLLTSDGAKTLETASGHC-------APVTCLALSSDSNFLVTGS-Q-DTTILL 2064 (2342)
Q Consensus 2004 fSpDGklLASGS----------~DGsIrVWDl~tgkll~tL~GHt-------~~VtcLAfSPDG~~LaSGS-~-DGTVrV 2064 (2342)
+||||+.|+.+. .+..|.|||..+++.+..+.--. ..-..++++|||++|+... . +..|.|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 899999666554 47899999999999887776322 1234789999999998765 3 789999
Q ss_pred EeccCCccccccccCCCCC------CccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEE-EEEec-CCCEEE
Q 000085 2065 WRIHRAFTSRTGTIEPSSG------MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILC-CCVSS-DLGVVV 2136 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~~~~------V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~-VafSP-Dg~lLa 2136 (2342)
.|+.+++.+.+.....+.. ......+.||..+.....+..... ......+.+....+.. -.|.+ +++++.
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~--~~~~~vf~~~~~~v~~rP~~~~~dg~~~~ 210 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK--IKPTEVFHPEDEYLINHPAYSNKSGRLVW 210 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceE--EeeeeeecCCccccccCCceEcCCCcEEE
Confidence 9999987666553211111 111222344444433322211100 0011111111111100 03455 787777
Q ss_pred EEeCCCcEEEEECCCC-----eEEEEEec---------CCcEEEEEecCCcEEEEEeC----------CCeEEEEEeCCc
Q 000085 2137 SCSDSSDLLLHSIRRG-----RLIRRLVG---------VDAHAVSLSSEGVIMTWNKL----------QHTLSSFTLNGV 2192 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrTG-----klIrsL~g---------h~vssLSfSpDG~IlVwdss----------dGsI~I~dlnG~ 2192 (2342)
.... |+|.+.|+... ..+..+.. .....++++++|..++.... .+.+.+++....
T Consensus 211 vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~ 289 (352)
T TIGR02658 211 PTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG 289 (352)
T ss_pred EecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC
Confidence 6666 99999996443 33332221 12345999999876665321 146888887643
Q ss_pred -eeeeecCCCCCCeEEEEEccCCC-EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2193 -LVARAKLPLSGSIGCMEISLDGH-SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2193 -~L~s~~~~Hs~~ItsLafSPDGk-~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
.+.... -...+..++++|||+ +|++.. + .++.|.|+
T Consensus 290 kvi~~i~--vG~~~~~iavS~Dgkp~lyvtn--~--------------------------------------~s~~VsVi 327 (352)
T TIGR02658 290 KRLRKIE--LGHEIDSINVSQDAKPLLYALS--T--------------------------------------GDKTLYIF 327 (352)
T ss_pred eEEEEEe--CCCceeeEEECCCCCeEEEEeC--C--------------------------------------CCCcEEEE
Confidence 344333 345899999999999 666542 1 15679999
Q ss_pred ECCCCeEEEEEe
Q 000085 2271 DLHTLKVFHVLK 2282 (2342)
Q Consensus 2271 DL~Tgk~L~tL~ 2282 (2342)
|..+++.+.++.
T Consensus 328 D~~t~k~i~~i~ 339 (352)
T TIGR02658 328 DAETGKELSSVN 339 (352)
T ss_pred ECcCCeEEeeec
Confidence 999999999883
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.20 E-value=0.00018 Score=92.61 Aligned_cols=177 Identities=14% Similarity=0.084 Sum_probs=110.2
Q ss_pred EEEEcCCCCE-EEEEEcC---CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCC--ceEEEeccCCccc
Q 000085 2001 VVSITHDKEI-ITGGHVD---GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDT--TILLWRIHRAFTS 2073 (2342)
Q Consensus 2001 ~VafSpDGkl-LASGS~D---GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DG--TVrVWDl~tg~~i 2073 (2342)
.-.|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+.+..|+|||+.|+ +.+.++ .|.++|+.++..
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~- 269 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL- 269 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-
Confidence 4789999984 6644433 468899998886554333 455677789999998765 444444 455555544311
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CC--cEEEEECC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SS--DLLLHSIR 2150 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DG--tIrIWDLr 2150 (2342)
..+..+........|+|||+.|+-.+. .| .|++.|+.
T Consensus 270 ----------------------------------------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 270 ----------------------------------------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred ----------------------------------------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence 111222222234469999987765553 33 68888998
Q ss_pred CCeEEEEEecCCcEEEEEecCCcEEEEEeCC---------CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2151 RGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQ---------HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2151 TGklIrsL~gh~vssLSfSpDG~IlVwdssd---------GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+|+..+.... ......|||||+.+++.... ..|.++++.+........ ........|+|||+.++..+
T Consensus 310 ~g~~~rlt~~-g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~--~~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 310 SGSVEQVVFH-GKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA--NGVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred CCCeEeCccC-CCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC--CCCcCCeEECCCCCEEEEEE
Confidence 8876443322 21235899999988887543 256777776554443322 22334688999999988765
Q ss_pred C
Q 000085 2222 N 2222 (2342)
Q Consensus 2222 ~ 2222 (2342)
.
T Consensus 387 ~ 387 (419)
T PRK04043 387 Y 387 (419)
T ss_pred c
Confidence 3
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.20 E-value=0.0003 Score=86.95 Aligned_cols=172 Identities=14% Similarity=0.157 Sum_probs=121.3
Q ss_pred eeecCCCeEEecCCCceE--EEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCC-cEEEEecCCc
Q 000085 1952 FLFQHGKASASPASGTFL--RMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDG-SIKLLTSDGA 2028 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tI--RVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DG-sIrVWDl~tg 2028 (2342)
|...+|..++..|.++.. +.|.+. .....+.++++- ..+.-+++-++.|..|| .+-|+|..++
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~~~~-----------~iqv~~~~~VrY---~r~~~~~e~~vigt~dgD~l~iyd~~~~ 392 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPWDGY-----------SIQVGKKGGVRY---RRIQVDPEGDVIGTNDGDKLGIYDKDGG 392 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCCCCe-----------eEEcCCCCceEE---EEEccCCcceEEeccCCceEEEEecCCc
Confidence 445577788777776432 223221 112233444433 66777888888999999 8999999887
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
+. ..+...-+.|.++..+++|++++.+.....+.+.|+.++...
T Consensus 393 e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~----------------------------------- 436 (668)
T COG4946 393 EV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR----------------------------------- 436 (668)
T ss_pred eE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee-----------------------------------
Confidence 64 445556788999999999999999998889999999886321
Q ss_pred cCCceEEecCCCCCeEEEEEecCCCEEEEEeCCC----cEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEE
Q 000085 2109 IEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSS----DLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWN 2178 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG----tIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwd 2178 (2342)
..-+...+-|+..+|+|++++++-+--+| .|+++|+.+++......... ..+-+|.|||+.+.+-
T Consensus 437 -----~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 437 -----LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred -----EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 11133456789999999999999776665 68999998887665443322 3456788899877654
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.18 E-value=6.3e-06 Score=112.75 Aligned_cols=182 Identities=16% Similarity=0.107 Sum_probs=125.2
Q ss_pred cCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc-cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc
Q 000085 1994 SGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1994 ~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
.++..|.++.-+|...+.++|+.||+|++|....++.+..+. +....|+.+.|+.+|+.+..+..||.+.+|......
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~- 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP- 2284 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcc-
Confidence 356677778888988999999999999999998888776553 233889999999999999999999999999987311
Q ss_pred ccccccCCCCCCccccccCCCCCceeec--CC--CccccccCC---ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANAS--AD--KSRRRRIEG---PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLL 2145 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s--~D--~s~~~~i~~---~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIr 2145 (2342)
......|..+...+.|-. ..+++.+ .+ .+..|++.. .-.+-..|.+.++|+++-|..++++|||.+|.|+
T Consensus 2285 -~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2285 -YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred -eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 111122222222222221 1222111 11 223355421 1122288999999999999999999999999999
Q ss_pred EEECCCCeEEEEEec--CCcEEEEEecCCcEEEEEe
Q 000085 2146 LHSIRRGRLIRRLVG--VDAHAVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2146 IWDLrTGklIrsL~g--h~vssLSfSpDG~IlVwds 2179 (2342)
+||++..++++++.. .+.+.+..+..|.+.+|..
T Consensus 2362 l~D~rqrql~h~~~~~~~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQALDTREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred EeehHHHHHHHHhhhhhhhheeeccCcccceEEEEc
Confidence 999999888777654 1234455555555555554
No 279
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.17 E-value=0.00012 Score=91.58 Aligned_cols=263 Identities=12% Similarity=0.069 Sum_probs=154.6
Q ss_pred eEEEEEcCCCCEEEEEEc---------------CCcEEEEecCCcccceecccCCCC--eE-EEEecCCCCEEEEEeCCC
Q 000085 1999 SAVVSITHDKEIITGGHV---------------DGSIKLLTSDGAKTLETASGHCAP--VT-CLALSSDSNFLVTGSQDT 2060 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~---------------DGsIrVWDl~tgkll~tL~GHt~~--Vt-cLAfSPDG~~LaSGS~DG 2060 (2342)
|.-+.|+|.+++|++=+. ++.+.|||..+|.++..+.+-..+ .+ -+.|+-++++++-. -..
T Consensus 74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~ 152 (561)
T COG5354 74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGS 152 (561)
T ss_pred ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccC
Confidence 344889999999998653 335999999999999888776655 55 67788777766544 234
Q ss_pred ceEEEeccCCccccccccCCCCCCccccccCCC-----------------------------------------------
Q 000085 2061 TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS----------------------------------------------- 2093 (2342)
Q Consensus 2061 TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG----------------------------------------------- 2093 (2342)
.+.|+++......+.+......++....++|.|
T Consensus 153 sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~ 232 (561)
T COG5354 153 SLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV 232 (561)
T ss_pred eEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec
Confidence 577777522111111111112223333333321
Q ss_pred --CCceeecCCCc------------ccccc-CCceEEecCCCCCeEEEEEecCCCEEEE--EeCCCcEEEEECCCCeEEE
Q 000085 2094 --STPANASADKS------------RRRRI-EGPIHVLRGHHREILCCCVSSDLGVVVS--CSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2094 --~~Las~s~D~s------------~~~~i-~~~l~~L~GHs~~Vt~VafSPDg~lLaS--GS~DGtIrIWDLrTGklIr 2156 (2342)
..+.+...... ...++ +..+....+-.++|...+|.|.++.+++ |-.+-.+.++|++.. ...
T Consensus 233 ~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~ 311 (561)
T COG5354 233 LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF 311 (561)
T ss_pred CCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEE
Confidence 11111000000 00000 0111112244678999999998877654 457889999999765 555
Q ss_pred EEecCCcEEEEEecCCcEEEEEe---CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccc
Q 000085 2157 RLVGVDAHAVSLSSEGVIMTWNK---LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233 (2342)
Q Consensus 2157 sL~gh~vssLSfSpDG~IlVwds---sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~ 2233 (2342)
.+....-.-+.|||.+++++... ..|.+.+|+..|+......+ .....+-+.|+|||+++.+...+...
T Consensus 312 ~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~-~~~n~s~~~wspd~qF~~~~~ts~k~------- 383 (561)
T COG5354 312 YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF-NGLNTSYCDWSPDGQFYDTDTTSEKL------- 383 (561)
T ss_pred ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEe-ecCCceEeeccCCceEEEecCCCccc-------
Confidence 55444456678999999887643 34788899988765544221 12234456799999999876421110
Q ss_pred ccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2234 Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG 2308 (2342)
-.|..|.|||+...... ..+.+.|.|.|++..+.+.+.
T Consensus 384 ----------------------------~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 384 ----------------------------RVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ----------------------------ccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 02788999998654322 345567777777666655544
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.12 E-value=0.00045 Score=96.38 Aligned_cols=219 Identities=17% Similarity=0.100 Sum_probs=133.5
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEE----ecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLL----TSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVW----Dl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
.+..+.+-++...++.+..+|.|.++ +..+.. +.....-...|.|++||||+..|+..+.++++.+-+-. ...+
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i 154 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPI 154 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEE
Confidence 34457888898888888999999999 444332 22222345689999999999999999999998876432 1111
Q ss_pred ccc--ccCC--CCCCccccccCCCCCceeecCCCc--c-ccccCCc---eEEecCCCCCeEEEEEecCCCEEEEEeC---
Q 000085 2074 RTG--TIEP--SSGMGTPGNSIGSSTPANASADKS--R-RRRIEGP---IHVLRGHHREILCCCVSSDLGVVVSCSD--- 2140 (2342)
Q Consensus 2074 ~t~--~~~~--~~~V~svs~SpDG~~Las~s~D~s--~-~~~i~~~---l~~L~GHs~~Vt~VafSPDg~lLaSGS~--- 2140 (2342)
... .... ......+.|......+- |...+. + ..+...+ ...+. +.+.-..++|-.||.++|+.+.
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~-Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFH-GSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccC-cchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence 111 0000 00111111111111110 000000 0 0000001 12233 5566778999999999987764
Q ss_pred C---CcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeC---CCeEEEEEeCCceeeeecCC---CCCCeEEEE
Q 000085 2141 S---SDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKL---QHTLSSFTLNGVLVARAKLP---LSGSIGCME 2209 (2342)
Q Consensus 2141 D---GtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdss---dGsI~I~dlnG~~L~s~~~~---Hs~~ItsLa 2209 (2342)
+ ..++||+- .|.+..+-+... ...++|-|.|.+++...+ ...|..|.-||-.-...... ....|..+.
T Consensus 233 ~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~ 311 (928)
T PF04762_consen 233 TGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELA 311 (928)
T ss_pred CCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEE
Confidence 2 47999995 476554443222 367899999998887654 34678888888555444433 456899999
Q ss_pred EccCCCEEEEEe
Q 000085 2210 ISLDGHSALIGV 2221 (2342)
Q Consensus 2210 fSPDGk~LaSGS 2221 (2342)
|++|+..|+...
T Consensus 312 Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 312 WNSDSEILAVWL 323 (928)
T ss_pred ECCCCCEEEEEe
Confidence 999999999764
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.09 E-value=1.9e-05 Score=108.43 Aligned_cols=221 Identities=10% Similarity=0.104 Sum_probs=158.7
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc-CCc
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI-EGP 2112 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i-~~~ 2112 (2342)
..|-..|.|+.-+|...+-+||+.||.|++|....+..+..........++...|+..|+.......|+. ..|.. .++
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcc
Confidence 4456789999999999999999999999999999888777764444588889999999988877666654 44655 456
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCC---CeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEE
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCS---DSSDLLLHSIRR---GRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSS 2186 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS---~DGtIrIWDLrT---GklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I 2186 (2342)
....+.|....+.+.|-. ..+++++ .++.+.+||..- ..++.+-..++.+++++-|...+++.++++|.+++
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence 777888999988888865 5566654 578999999642 24556555556889999999999999999999999
Q ss_pred EEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe
Q 000085 2187 FTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2187 ~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
|++..+.+. |.-+. +. ...++++|+ ..|.
T Consensus 2363 ~D~rqrql~-----h~~~~----~~-~~~~f~~~s-----------------------------------------s~g~ 2391 (2439)
T KOG1064|consen 2363 FDIRQRQLR-----HTFQA----LD-TREYFVTGS-----------------------------------------SEGN 2391 (2439)
T ss_pred eehHHHHHH-----HHhhh----hh-hhheeeccC-----------------------------------------cccc
Confidence 998765554 33222 33 455666654 2577
Q ss_pred EEEEECCCCeEEEEEecCCCCC----e--EEEEEecCCCEEEEEeCCCc
Q 000085 2267 ICFLDLHTLKVFHVLKLGEGQD----I--TALALNKDNTNLLVSTADKQ 2309 (2342)
Q Consensus 2267 IrIWDL~Tgk~L~tL~lgHs~~----I--tsLafSPDG~~LaSGSsDGs 2309 (2342)
|+||++.....+++++..|... . ..+... .+.+|.+|+.||+
T Consensus 2392 ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2392 IKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred eEEEEccccchhhcCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence 9999998888888777444210 1 111122 2345777877764
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.07 E-value=0.00086 Score=86.50 Aligned_cols=220 Identities=9% Similarity=0.007 Sum_probs=128.4
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCE-EEEEeCC---CceEEEeccCCccccccccCCCCCCccccccCCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNF-LVTGSQD---TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS 2093 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~-LaSGS~D---GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG 2093 (2342)
..|.+-|.+.... +.+.... .+....|+|||+. ++..+.+ ..|.++|+.++..
T Consensus 169 ~~l~~~d~dg~~~-~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--------------------- 225 (419)
T PRK04043 169 SNIVLADYTLTYQ-KVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--------------------- 225 (419)
T ss_pred ceEEEECCCCCce-eEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---------------------
Confidence 4566656655443 3333233 7788999999985 5544443 4577777766421
Q ss_pred CCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCC--CcEEEEECCCCeEEEEEecCC-cEEEEEe
Q 000085 2094 STPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDS--SDLLLHSIRRGRLIRRLVGVD-AHAVSLS 2169 (2342)
Q Consensus 2094 ~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~D--GtIrIWDLrTGklIrsL~gh~-vssLSfS 2169 (2342)
..+....+...+..|+|||+.++ +.+.+ ..|.++|+.++...+...... .....|+
T Consensus 226 --------------------~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~S 285 (419)
T PRK04043 226 --------------------EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFV 285 (419)
T ss_pred --------------------EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEEC
Confidence 11122334455678999998665 34333 568888988876443322222 3456899
Q ss_pred cCCcEEEEEeC-CC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccc
Q 000085 2170 SEGVIMTWNKL-QH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTED 2246 (2342)
Q Consensus 2170 pDG~IlVwdss-dG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ia 2246 (2342)
|||+.+++... .+ .|+++++.+......... +. ....|+|||++++..+......
T Consensus 286 PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~------------------- 343 (419)
T PRK04043 286 EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-NNSSVSTYKNYIVYSSRETNNE------------------- 343 (419)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-cCceECCCCCEEEEEEcCCCcc-------------------
Confidence 99987776643 33 566667666544333321 11 2348999999998765211100
Q ss_pred cccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC-C--cEEEEeCCCC
Q 000085 2247 FDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD-K--QLIVFTDPAL 2318 (2342)
Q Consensus 2247 Fspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD-G--sIrVWDi~sL 2318 (2342)
+ ......|.+.|+.++.. ..+. .. .......|+|||+.|+..+.+ + .|.+.+..+.
T Consensus 344 ~-------------~~~~~~I~v~d~~~g~~-~~LT-~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 344 F-------------GKNTFNLYLISTNSDYI-RRLT-AN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred c-------------CCCCcEEEEEECCCCCe-EECC-CC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 0 00024688899988864 3343 12 233468899999988766543 2 3556665443
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.04 E-value=1.9e-05 Score=96.43 Aligned_cols=106 Identities=23% Similarity=0.296 Sum_probs=82.8
Q ss_pred EEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCC
Q 000085 2014 GHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS 2093 (2342)
Q Consensus 2014 GS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG 2093 (2342)
.+....+.+|....+.+ .-+-||-..++.++|+||+++|+|+.+|..|+|-.......+..
T Consensus 128 agD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies------------------ 188 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES------------------ 188 (390)
T ss_pred cCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh------------------
Confidence 34556677777766433 44568999999999999999999999999999877655321111
Q ss_pred CCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 000085 2094 STPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG 2160 (2342)
Q Consensus 2094 ~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g 2160 (2342)
-.-||+.-|..++..+ +..|+|||.|++|++||+++|+++.++..
T Consensus 189 ---------------------fclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 189 ---------------------FCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ---------------------hccccHhheeeeeecc-CceeeecCCCCcEEEEecccCCcccccch
Confidence 1358999999999865 45589999999999999999999877654
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=6.5e-06 Score=101.39 Aligned_cols=206 Identities=19% Similarity=0.257 Sum_probs=134.5
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
+..+.||+..|..++--.+.+-++++|.|.||++|.++...-. ..+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------------------------------~~ts 774 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------------------------------IGTS 774 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc---------------------------------cccc
Confidence 4567899999999988778899999999999999999763100 0011
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec---CC--cEEEEEe-cCCcEEEEE-eCCCe
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG---VD--AHAVSLS-SEGVIMTWN-KLQHT 2183 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g---h~--vssLSfS-pDG~IlVwd-ssdGs 2183 (2342)
.+..+++.|..+|..+.|-.+.+.++++ ||.|.+||.--|+.+..+.. ++ ....+.- -+..+++.+ ....+
T Consensus 775 aCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeST 852 (1034)
T KOG4190|consen 775 ACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAEST 852 (1034)
T ss_pred eeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhh
Confidence 3455778999999999999998888765 78999999887777664432 11 2222322 245555554 33455
Q ss_pred EEEEEeCC-ceeeeecC----CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCC
Q 000085 2184 LSSFTLNG-VLVARAKL----PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNN 2258 (2342)
Q Consensus 2184 I~I~dlnG-~~L~s~~~----~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~ 2258 (2342)
+++++... ........ .-+.-+.++++.+.|+.+++|-
T Consensus 853 VKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L------------------------------------- 895 (1034)
T KOG4190|consen 853 VKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL------------------------------------- 895 (1034)
T ss_pred heeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHh-------------------------------------
Confidence 66665431 11111110 1345678888888888877652
Q ss_pred CccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE-Ee
Q 000085 2259 RFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIV-FT 2314 (2342)
Q Consensus 2259 ~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrV-WD 2314 (2342)
.+|+|.+.|.++|+.+..+. ........++ .|..+.|+....|.++.| |.
T Consensus 896 ----SnGci~~LDaR~G~vINswr-pmecdllqla-apsdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 896 ----SNGCIAILDARNGKVINSWR-PMECDLLQLA-APSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred ----cCCcEEEEecCCCceeccCC-cccchhhhhc-CchhHHHHhhcccceeEeeeh
Confidence 26789999999999887766 3333333333 244455666666666666 65
No 285
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=4.3e-06 Score=107.48 Aligned_cols=175 Identities=15% Similarity=0.186 Sum_probs=120.3
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCC--ceEEEeccCCccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDT--TILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DG--TVrVWDl~tg~~i~t 2075 (2342)
.-+|++|+-+.+.|+.|+..|.|++|++.+|.......+|..+||-+.=+.||..+.+.+.-. -..+|+....
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~----- 1177 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST----- 1177 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc-----
Confidence 346799999999999999999999999999999999999999999999999998877655432 4667877541
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLI 2155 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklI 2155 (2342)
..+.+.+. .-.|+.|+.....-+.|+......+||+.|+..+
T Consensus 1178 ----------------------------------~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1178 ----------------------------------GGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred ----------------------------------cCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 12333333 2357778765444445555567899999999887
Q ss_pred EEE-ecC-----CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2156 RRL-VGV-----DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2156 rsL-~gh-----~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.++ .+. ...++.|+|+.++++|++ .+|++........+-..+.. -.=.|+|.|.-++..+
T Consensus 1220 ~tylt~~~~~~y~~n~a~FsP~D~LIlndG-----vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPCDTLILNDG-----VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS 1285 (1516)
T ss_pred HHhcCcchhhhhhccccccCCCcceEeeCc-----eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec
Confidence 773 321 247889999999998864 36776432111000001111 1225778887777553
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.98 E-value=3.5e-05 Score=97.82 Aligned_cols=157 Identities=14% Similarity=0.172 Sum_probs=108.8
Q ss_pred CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC
Q 000085 2039 APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG 2118 (2342)
Q Consensus 2039 ~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G 2118 (2342)
....|++|+....+++.|+.||.++|-.+.+...-... . | ++..+. -..-+++.|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~-----~----------g--laa~sn--------LsmNQtLeG 69 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNK-----S----------G--LAAASN--------LSMNQTLEG 69 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccc-----c----------c--cccccc--------cchhhhhcc
Confidence 45789999999999999999999999998874211000 0 0 111000 122357899
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec----CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCcee
Q 000085 2119 HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG----VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLV 2194 (2342)
Q Consensus 2119 Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g----h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L 2194 (2342)
|...|..+.|+.+.+.+-|...+|.|.||-+-.|.....+.. ..+.+++|..||.-+.....||.+.+=+++|..+
T Consensus 70 H~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI 149 (1189)
T KOG2041|consen 70 HNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI 149 (1189)
T ss_pred CcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee
Confidence 999999999999999999999999999999987764433222 2257788999998777777888888877776544
Q ss_pred eeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2195 ARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2195 ~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
--..+ .......+.|++|.+.++.+-
T Consensus 150 wgKeL-kg~~l~hv~ws~D~~~~Lf~~ 175 (1189)
T KOG2041|consen 150 WGKEL-KGQLLAHVLWSEDLEQALFKK 175 (1189)
T ss_pred cchhc-chheccceeecccHHHHHhhh
Confidence 22111 112234677888876655443
No 287
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.92 E-value=0.0021 Score=79.83 Aligned_cols=233 Identities=15% Similarity=0.055 Sum_probs=153.9
Q ss_pred EEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC-----------CCCccc-cccC-CCCCceeecCCCcccccc
Q 000085 2043 CLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS-----------SGMGTP-GNSI-GSSTPANASADKSRRRRI 2109 (2342)
Q Consensus 2043 cLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~-----------~~V~sv-s~Sp-DG~~Las~s~D~s~~~~i 2109 (2342)
|=..+.||+.++- +.-|.|.++|..+.... .+..+.+ .....+ .+++ +|..++..+....-..+.
T Consensus 271 ~R~~nsDGkrIvF-q~~GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~ 348 (668)
T COG4946 271 PRNANSDGKRIVF-QNAGDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRP 348 (668)
T ss_pred ccccCCCCcEEEE-ecCCcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECC
Confidence 4445678887765 45678999998875322 2211100 000111 1222 455665555554443333
Q ss_pred CCceEEecCCCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEE
Q 000085 2110 EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSS-DLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSF 2187 (2342)
Q Consensus 2110 ~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG-tIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~ 2187 (2342)
..-...--+|.+.|.-..+..++.-++.|..|| .+-|+|.++++..+....- .+..+..++||+.++.+.....+.++
T Consensus 349 ~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vi 428 (668)
T COG4946 349 WDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVI 428 (668)
T ss_pred CCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEE
Confidence 333334457888899999988888899999999 8999999998866655543 47889999999988888777888888
Q ss_pred EeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2188 TLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2188 dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
++.............+-|+...|+|++++++-+--+|- -...|
T Consensus 429 didngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy-------------------------------------~tq~I 471 (668)
T COG4946 429 DIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGY-------------------------------------YTQSI 471 (668)
T ss_pred EecCCCeeEecccccceeEEEEEcCCceeEEEecCcce-------------------------------------eeeeE
Confidence 88755555555556788999999999999996631111 13569
Q ss_pred EEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe-------CCCcEEEEeCC
Q 000085 2268 CFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST-------ADKQLIVFTDP 2316 (2342)
Q Consensus 2268 rIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS-------sDGsIrVWDi~ 2316 (2342)
+++|+.+++...... ..+.=.+-+|.||+++|.--+ .|..+.=+...
T Consensus 472 klydm~~~Kiy~vTT--~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~ 525 (668)
T COG4946 472 KLYDMDGGKIYDVTT--PTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQ 525 (668)
T ss_pred EEEecCCCeEEEecC--CcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEe
Confidence 999999988655433 222335567889999887443 35555444433
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.91 E-value=0.0029 Score=80.92 Aligned_cols=250 Identities=8% Similarity=0.074 Sum_probs=126.3
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCC----C
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSS----G 2083 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~----~ 2083 (2342)
+..++.++.+|.++.+|..+|+.+-+............+ .+..++.++.++.+..+|..+++.........+. .
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 455666778999999999999987665543221111122 2456777888999999999988765544221110 0
Q ss_pred Cccccc--------cCCCCCceeecCCCccccccCCceEEecCCC-CCeEEEEEec--CCCEEEEEeCCCcEEEEECCCC
Q 000085 2084 MGTPGN--------SIGSSTPANASADKSRRRRIEGPIHVLRGHH-REILCCCVSS--DLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2084 V~svs~--------SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs-~~Vt~VafSP--Dg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
...... ..++...+....++...|....... ...+. .....+.-+| .+..++.++.+|.+..+|..+|
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~-~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQP-TGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccC-CCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 000000 1112222222222333333210000 00000 0000011111 2556777888999999999999
Q ss_pred eEEEEEecCC--------cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2153 RLIRRLVGVD--------AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2153 klIrsL~gh~--------vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
+.+....... ...+..+.+|.+++.+..+|.+ +|..+. ..+ ....+..+. +.+++.++
T Consensus 277 ~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~-------~~~-~~~~sp~v~--~g~l~v~~--- 342 (394)
T PRK11138 277 QIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVE-LWSQSD-------LLH-RLLTAPVLY--NGYLVVGD--- 342 (394)
T ss_pred CEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcE-EEcccc-------cCC-CcccCCEEE--CCEEEEEe---
Confidence 8776543211 1222233344444444433332 232110 000 011111111 23344332
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEE-EEEecCCCEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITA-LALNKDNTNLLV 2303 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~Its-LafSPDG~~LaS 2303 (2342)
.||.|.+.|..+|+.+....... ..+.+ ..+ .+..|++
T Consensus 343 --------------------------------------~~G~l~~ld~~tG~~~~~~~~~~-~~~~s~P~~--~~~~l~v 381 (394)
T PRK11138 343 --------------------------------------SEGYLHWINREDGRFVAQQKVDS-SGFLSEPVV--ADDKLLI 381 (394)
T ss_pred --------------------------------------CCCEEEEEECCCCCEEEEEEcCC-CcceeCCEE--ECCEEEE
Confidence 26789999999999988876322 22222 222 2447999
Q ss_pred EeCCCcEEEEeC
Q 000085 2304 STADKQLIVFTD 2315 (2342)
Q Consensus 2304 GSsDGsIrVWDi 2315 (2342)
++.||.|+.++.
T Consensus 382 ~t~~G~l~~~~~ 393 (394)
T PRK11138 382 QARDGTVYAITR 393 (394)
T ss_pred EeCCceEEEEeC
Confidence 999999999874
No 289
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0013 Score=86.74 Aligned_cols=191 Identities=15% Similarity=0.133 Sum_probs=124.5
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCC-eEEEEecCCCCEEEEEeCCCc-----eEEEeccCCccccc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAP-VTCLALSSDSNFLVTGSQDTT-----ILLWRIHRAFTSRT 2075 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~-VtcLAfSPDG~~LaSGS~DGT-----VrVWDl~tg~~i~t 2075 (2342)
-+|++.+..++.|+.+|.|.+.+- +-+.++.++.|... |+.+-...+..+|++.+.|++ ++||+++......
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~- 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN- 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC-
Confidence 457888999999999998877763 23444677777776 666655545578999887754 8999998742110
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC--C--
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR--R-- 2151 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr--T-- 2151 (2342)
...++... +.. .........++.+++++.+-..+|.|-.||.|..+.-. .
T Consensus 107 -------sP~c~~~~--------------ri~-----~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDr 160 (933)
T KOG2114|consen 107 -------SPQCLYEH--------------RIF-----TIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDR 160 (933)
T ss_pred -------Ccceeeee--------------eee-----ccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcc
Confidence 00000000 000 00011235678899999999999999999999987421 1
Q ss_pred CeE-EEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee-cCCCCCCeEEEEEccCCCEEEEE
Q 000085 2152 GRL-IRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA-KLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2152 Gkl-IrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~-~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
|.. .-...+ ..++.+++-.||..+++...+..|.+|.+.|+..... .-.|...++|..+++....++++
T Consensus 161 gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 161 GSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred ccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe
Confidence 111 111112 3489999999999877777888999999988763222 22377788999998765534444
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.84 E-value=0.0023 Score=76.30 Aligned_cols=215 Identities=12% Similarity=0.064 Sum_probs=137.1
Q ss_pred EEEEcC-CCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEec-CCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2001 VVSITH-DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS-SDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2001 ~VafSp-DGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfS-PDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
..+|.+ ++.++++....+.|+.|+..+++... +... . ...+++. +++.+ +.+..++. .++|..++........
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g~l-~v~~~~~~-~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDGRL-YVADSGGI-AVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTSEE-EEEETTCE-EEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccCCEE-EEEEcCce-EEEecCCCcEEEEeec
Confidence 367887 67777777788999999998875432 2211 1 5666777 66544 44455444 5558887643322211
Q ss_pred ---C-CCCCCccccccCCCCCceeecCCCc---------cccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCcE
Q 000085 2079 ---E-PSSGMGTPGNSIGSSTPANASADKS---------RRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSDL 2144 (2342)
Q Consensus 2079 ---~-~~~~V~svs~SpDG~~Las~s~D~s---------~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGtI 2144 (2342)
. .......+++.++|...++...... .++.....+..+...-...+.++|+|+++.++ +-+..+.|
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i 158 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRI 158 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeeccccccee
Confidence 1 3345667888899986665543321 12222323333333445678999999998765 66778899
Q ss_pred EEEECCC-Ce-E-----EEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEc-cCC
Q 000085 2145 LLHSIRR-GR-L-----IRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEIS-LDG 2214 (2342)
Q Consensus 2145 rIWDLrT-Gk-l-----IrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafS-PDG 2214 (2342)
..+++.. +. . +..+.... ..-+++..+|++.+.....+.|.+|+.+|+.+.....+ ...+++++|. ++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p-~~~~t~~~fgg~~~ 237 (246)
T PF08450_consen 159 WRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELP-VPRPTNCAFGGPDG 237 (246)
T ss_dssp EEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-S-SSSEEEEEEESTTS
T ss_pred EEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCC-CCCEEEEEEECCCC
Confidence 9999863 22 1 12222222 46799999999999888899999999999888877776 3489999994 676
Q ss_pred CEEEEEe
Q 000085 2215 HSALIGV 2221 (2342)
Q Consensus 2215 k~LaSGS 2221 (2342)
+.|++.+
T Consensus 238 ~~L~vTt 244 (246)
T PF08450_consen 238 KTLYVTT 244 (246)
T ss_dssp SEEEEEE
T ss_pred CEEEEEe
Confidence 6666543
No 291
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.82 E-value=2.7e-05 Score=66.08 Aligned_cols=39 Identities=41% Similarity=0.722 Sum_probs=36.7
Q ss_pred cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEe
Q 000085 2028 AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWR 2066 (2342)
Q Consensus 2028 gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWD 2066 (2342)
++++.++.+|.+.|++++|+|++.+|+||+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788999999999999999999999999999999997
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.82 E-value=0.012 Score=72.19 Aligned_cols=246 Identities=15% Similarity=0.116 Sum_probs=147.3
Q ss_pred EEEcC-CCCEEEEEEcCCc-EEEEecCCcccceecccCCCCe--EEEEecCCCCEEEEEe-----CCCceEEEeccCCcc
Q 000085 2002 VSITH-DKEIITGGHVDGS-IKLLTSDGAKTLETASGHCAPV--TCLALSSDSNFLVTGS-----QDTTILLWRIHRAFT 2072 (2342)
Q Consensus 2002 VafSp-DGklLASGS~DGs-IrVWDl~tgkll~tL~GHt~~V--tcLAfSPDG~~LaSGS-----~DGTVrVWDl~tg~~ 2072 (2342)
++.+| ++..++.+-.-|+ ..+||..+++..+.+....+.- =.-.||+||++|+|.= ..|.|-|||...+..
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 67788 5557777777665 6789999998776543222111 1247999999999863 458899999984321
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
.......+.-+...+.+.|||..++++... +..|.+. ....+=-...+-.+..-|..+|
T Consensus 90 ri~E~~s~GIGPHel~l~pDG~tLvVANGG-------------I~Thpd~--------GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMPDGETLVVANGG-------------IETHPDS--------GRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred EEeEecCCCcChhhEEEcCCCCEEEEEcCC-------------CccCccc--------CceecChhhcCCceEEEecCCC
Confidence 111122233334455566777666554432 0111110 0011112234456666777888
Q ss_pred eEEEEEec----C--CcEEEEEecCCcEEEEEeCCC-------eEEEEEeCCceeeeecC------CCCCCeEEEEEccC
Q 000085 2153 RLIRRLVG----V--DAHAVSLSSEGVIMTWNKLQH-------TLSSFTLNGVLVARAKL------PLSGSIGCMEISLD 2213 (2342)
Q Consensus 2153 klIrsL~g----h--~vssLSfSpDG~IlVwdssdG-------sI~I~dlnG~~L~s~~~------~Hs~~ItsLafSPD 2213 (2342)
+.+..... | +++.+++..+|.+.+-.-..| -+.++.. +..+..... ...+.|-+|+++++
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~ 227 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRD 227 (305)
T ss_pred ceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCC
Confidence 87776432 3 478899999998776543322 1223332 222222111 14578999999999
Q ss_pred CCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEE
Q 000085 2214 GHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALA 2293 (2342)
Q Consensus 2214 Gk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLa 2293 (2342)
|.++++.+- .-+.+.+||..+++.+.... -..+..++
T Consensus 228 g~~ia~tsP----------------------------------------rGg~~~~~d~~tg~~~~~~~---l~D~cGva 264 (305)
T PF07433_consen 228 GRLIAVTSP----------------------------------------RGGRVAVWDAATGRLLGSVP---LPDACGVA 264 (305)
T ss_pred CCEEEEECC----------------------------------------CCCEEEEEECCCCCEeeccc---cCceeeee
Confidence 999987751 14679999999999887765 33577788
Q ss_pred EecCCCEEEEEeCCCcEEEEe
Q 000085 2294 LNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2294 fSPDG~~LaSGSsDGsIrVWD 2314 (2342)
..+++ ++++. ..|.+....
T Consensus 265 ~~~~~-f~~ss-G~G~~~~~~ 283 (305)
T PF07433_consen 265 PTDDG-FLVSS-GQGQLIRLS 283 (305)
T ss_pred ecCCc-eEEeC-CCccEEEcc
Confidence 77777 45444 445544444
No 293
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.81 E-value=0.0049 Score=86.31 Aligned_cols=172 Identities=13% Similarity=0.057 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecC---------------C--------cccceeccc-------------------
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSD---------------G--------AKTLETASG------------------- 2036 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~---------------t--------gkll~tL~G------------------- 2036 (2342)
+.|++||||+.+|+..+.++++.+.+-+ . |+.-..|+|
T Consensus 123 I~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d 202 (928)
T PF04762_consen 123 ILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVD 202 (928)
T ss_pred EEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccc
Confidence 4569999999999998888888875421 0 111111111
Q ss_pred -----CCCCeEEEEecCCCCEEEEEeC---C---CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC--
Q 000085 2037 -----HCAPVTCLALSSDSNFLVTGSQ---D---TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-- 2103 (2342)
Q Consensus 2037 -----Ht~~VtcLAfSPDG~~LaSGS~---D---GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-- 2103 (2342)
+.+.-..++|-.||.++|..+. + +.++||+-+. ....+ .....+--..++|.|.|+.+++.....
T Consensus 203 ~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-~L~st-SE~v~gLe~~l~WrPsG~lIA~~q~~~~~ 280 (928)
T PF04762_consen 203 EGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-ELQST-SEPVDGLEGALSWRPSGNLIASSQRLPDR 280 (928)
T ss_pred cCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-eEEec-cccCCCccCCccCCCCCCEEEEEEEcCCC
Confidence 3345567899999999998764 2 5799999773 22221 223344456789999999998776411
Q ss_pred --ccccccCCce---EEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE--EEEEecC---CcEEEEEecC
Q 000085 2104 --SRRRRIEGPI---HVL--RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL--IRRLVGV---DAHAVSLSSE 2171 (2342)
Q Consensus 2104 --s~~~~i~~~l---~~L--~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl--IrsL~gh---~vssLSfSpD 2171 (2342)
+..+...+.. ..+ ......|..+.|++|+..++..-.|. |.+|...+... .+.+... ....+.|++.
T Consensus 281 ~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 281 HDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPE 359 (928)
T ss_pred cEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCC
Confidence 1112222221 112 23456899999999999999877665 99999877642 2333321 2334677775
Q ss_pred Cc
Q 000085 2172 GV 2173 (2342)
Q Consensus 2172 G~ 2173 (2342)
..
T Consensus 360 ~p 361 (928)
T PF04762_consen 360 KP 361 (928)
T ss_pred CC
Confidence 43
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.78 E-value=0.00055 Score=81.12 Aligned_cols=267 Identities=14% Similarity=0.181 Sum_probs=157.9
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc-----cceecccCC------------CCeEEEEecCCC--CEEEEEeC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAK-----TLETASGHC------------APVTCLALSSDS--NFLVTGSQ 2058 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgk-----ll~tL~GHt------------~~VtcLAfSPDG--~~LaSGS~ 2058 (2342)
-+++|-|...|.++++|...|.|.+|.-.... ....+++|. ..|..+.|..++ ..++-.+.
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN 107 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN 107 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence 35668999999999999888999999755322 233466664 357788887654 34555678
Q ss_pred CCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc--------cCCceEEe-cCCCCCeEEEEEe
Q 000085 2059 DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR--------IEGPIHVL-RGHHREILCCCVS 2129 (2342)
Q Consensus 2059 DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~--------i~~~l~~L-~GHs~~Vt~VafS 2129 (2342)
|.+|++|.+...............++ -+|-+..+.+.. .....+ ...+.... ..|...|+++.|.
T Consensus 108 dktiKlWKiyeknlk~va~nnls~~~----~~~~~g~~~s~~--~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 108 DKTIKLWKIYEKNLKVVAENNLSDSF----HSPMGGPLTSTK--ELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred Cceeeeeeeecccchhhhcccccccc----ccccCCCcCCHH--HhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 99999999976321111000000000 011111010000 000000 01222223 6788899999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCe---EEEEEecCC-------cEEEEEecCC-cEEEEEeCCCeEEEEEeCCceee---
Q 000085 2130 SDLGVVVSCSDSSDLLLHSIRRGR---LIRRLVGVD-------AHAVSLSSEG-VIMTWNKLQHTLSSFTLNGVLVA--- 2195 (2342)
Q Consensus 2130 PDg~lLaSGS~DGtIrIWDLrTGk---lIrsL~gh~-------vssLSfSpDG-~IlVwdssdGsI~I~dlnG~~L~--- 2195 (2342)
.|...++++ .|=.|.+|++.--. .+-.++.|. ++...|+|.. .++.+....|.|++-++....+.
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 998887765 46789999986432 233334432 4556666653 45566777777777766421110
Q ss_pred ----eecC---------CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccC
Q 000085 2196 ----RAKL---------PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDF 2262 (2342)
Q Consensus 2196 ----s~~~---------~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias 2262 (2342)
.... .-...|..+.|+++|+++++-.
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd----------------------------------------- 299 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD----------------------------------------- 299 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----------------------------------------
Confidence 0000 1235788899999999999553
Q ss_pred CCCeEEEEECCC-CeEEEEEecCC------------CCCe---EEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2263 PSPSICFLDLHT-LKVFHVLKLGE------------GQDI---TALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2263 ~DGsIrIWDL~T-gk~L~tL~lgH------------s~~I---tsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
=-+|+|||++. ..++.+++ -| ...| ..+.||-|...+++|+..+..-++-
T Consensus 300 -yltvkiwDvnm~k~pikTi~-~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 300 -YLTVKIWDVNMAKNPIKTIP-MHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred -cceEEEEecccccCCceeec-hHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 13588888865 34566664 22 1222 3467888888888888777666665
No 295
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.0016 Score=82.82 Aligned_cols=167 Identities=11% Similarity=0.148 Sum_probs=119.9
Q ss_pred EEEEcCCCC---EEEEEEcCC---------cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEE--EeCCCceEEEe
Q 000085 2001 VVSITHDKE---IITGGHVDG---------SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVT--GSQDTTILLWR 2066 (2342)
Q Consensus 2001 ~VafSpDGk---lLASGS~DG---------sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaS--GS~DGTVrVWD 2066 (2342)
.+.|++-|. +|++..-|. ++++.++++..+.-.+. -.++|.++.|+++|+.++. |-.-..+.|+|
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn 300 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN 300 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence 367887777 333333333 57777776333333332 4789999999999976654 44556777777
Q ss_pred ccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC---Cc
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS---SD 2143 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D---Gt 2143 (2342)
++.. ++.. --.++-+++-|+|.|++++.+|-+ |.
T Consensus 301 lr~~-----------------------------------------~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 301 LRGK-----------------------------------------PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred CCCC-----------------------------------------EeEe--CCCCCccceEECCCCCEEEEeecCCCCCc
Confidence 7641 1222 234566788999999999887754 89
Q ss_pred EEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeC------CCeEEEEEeCCceeeeecCCCCCCeEEEEEccC
Q 000085 2144 LLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKL------QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLD 2213 (2342)
Q Consensus 2144 IrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdss------dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPD 2213 (2342)
+-|||+.+.+++..+.....+.+.|+|||.+++.... |+.+++|+..|..+....+.. ....+.|-|.
T Consensus 338 mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~s--EL~qv~W~P~ 411 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKS--ELLQVEWRPF 411 (566)
T ss_pred eEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhH--hHhheeeeec
Confidence 9999999999999999888899999999999988754 467899999998876554322 5777788753
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.0001 Score=91.29 Aligned_cols=159 Identities=13% Similarity=0.101 Sum_probs=105.3
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCC-------cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDG-------AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~t-------gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
++--.+.+-+++++.|.+|++|.+.. ..+..+++.|+.+|..+.|-.+-+++++ .||-|.+||.--+....
T Consensus 741 i~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~La 818 (1034)
T KOG4190|consen 741 IAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLA 818 (1034)
T ss_pred HHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhH
Confidence 44334455677889999999999763 2366788999999999999988888876 48999999988766544
Q ss_pred cccc-CCCCCCccccccC--CCCCceee-cCCCc-ccccc-------CCceEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2075 TGTI-EPSSGMGTPGNSI--GSSTPANA-SADKS-RRRRI-------EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSS 2142 (2342)
Q Consensus 2075 t~~~-~~~~~V~svs~Sp--DG~~Las~-s~D~s-~~~~i-------~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG 2142 (2342)
.... ...+.+..+..-+ +...+..+ ....+ ...+. +-.+..-.+...-+.|+++.+.|++++.+-..|
T Consensus 819 q~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG 898 (1034)
T KOG4190|consen 819 QMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG 898 (1034)
T ss_pred hhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCC
Confidence 3311 1111111111111 23333322 22222 11111 111222245567789999999999999999999
Q ss_pred cEEEEECCCCeEEEEEecCC
Q 000085 2143 DLLLHSIRRGRLIRRLVGVD 2162 (2342)
Q Consensus 2143 tIrIWDLrTGklIrsL~gh~ 2162 (2342)
+|.+.|.++|+.+.+++.-+
T Consensus 899 ci~~LDaR~G~vINswrpme 918 (1034)
T KOG4190|consen 899 CIAILDARNGKVINSWRPME 918 (1034)
T ss_pred cEEEEecCCCceeccCCccc
Confidence 99999999999988776544
No 297
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.67 E-value=0.00033 Score=89.94 Aligned_cols=246 Identities=12% Similarity=0.069 Sum_probs=141.5
Q ss_pred EEEEcCCCC--EEEEEEcCCcEEEEecCC---cccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCcccc
Q 000085 2001 VVSITHDKE--IITGGHVDGSIKLLTSDG---AKTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2001 ~VafSpDGk--lLASGS~DGsIrVWDl~t---gkll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
-+.|++... +-++......-.+|++.. ...-..+.||+..|+.+.|.|.. ..+++++.|..|..||++...
T Consensus 72 d~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--- 148 (1081)
T KOG0309|consen 72 DVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--- 148 (1081)
T ss_pred ceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---
Confidence 355665543 333334455566788753 23345678999999999999864 578999999999999998731
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR- 2153 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk- 2153 (2342)
.++.....-....+.|.|+.....+...+....|++||++.|.
T Consensus 149 ------------------------------------~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~ 192 (1081)
T KOG0309|consen 149 ------------------------------------RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST 192 (1081)
T ss_pred ------------------------------------cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCc
Confidence 1222233333455678888655556666777889999999764
Q ss_pred EEEEEecCC--cEEEEEecCCcEEEE-EeCCCeEEEEEeCCce-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC
Q 000085 2154 LIRRLVGVD--AHAVSLSSEGVIMTW-NKLQHTLSSFTLNGVL-VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229 (2342)
Q Consensus 2154 lIrsL~gh~--vssLSfSpDG~IlVw-dssdGsI~I~dlnG~~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~ 2229 (2342)
.+.++++|- +..+.|..--.-.+| ...++++..|+..... ......+.+.+|+.-.+.|-|+-.++--..|..
T Consensus 193 pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n--- 269 (1081)
T KOG0309|consen 193 PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGN--- 269 (1081)
T ss_pred ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCe---
Confidence 566676643 222222211111111 1223444444432110 011111244566666666655433321111110
Q ss_pred CcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC-CeEEEEEecCCCCCeEEEEEecCC----------
Q 000085 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT-LKVFHVLKLGEGQDITALALNKDN---------- 2298 (2342)
Q Consensus 2230 i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T-gk~L~tL~lgHs~~ItsLafSPDG---------- 2298 (2342)
+. .... .+.....|+..+ .++++++. ||...|....|-..+
T Consensus 270 ----~v-------------------~~~~----c~n~d~e~n~~~~~~pVh~F~-GH~D~V~eFlWR~r~e~~~d~d~rd 321 (1081)
T KOG0309|consen 270 ----MV-------------------PQLR----CENSDLEWNVFDLNTPVHTFV-GHDDVVLEFLWRKRKECDGDYDSRD 321 (1081)
T ss_pred ----ee-------------------eecc----ccchhhhhccccCCcceeeec-CcchHHHHHhhhhcccccCCCCccc
Confidence 00 0000 123344455544 46788998 999888777775433
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 000085 2299 TNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2299 ~~LaSGSsDGsIrVWDi~ 2316 (2342)
-+|+|-+.|..+++|-+.
T Consensus 322 fQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 322 FQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eeEEEeecCCceEeeecc
Confidence 269999999999999854
No 298
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.65 E-value=0.0045 Score=78.39 Aligned_cols=254 Identities=13% Similarity=0.078 Sum_probs=132.8
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccc
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTP 2087 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~sv 2087 (2342)
+..+++++.+|.+..+|..+|+.+-...-.......... ++..++.++.|+.+..+|..+++.....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~----------- 131 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRA----------- 131 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeee-----------
Confidence 557778888999999999999887654433322222333 4678888999999999999886533221
Q ss_pred cccCCCCCceeecCCCccccccCCceEEecCCCCCeEE-EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcE--
Q 000085 2088 GNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILC-CCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAH-- 2164 (2342)
Q Consensus 2088 s~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~-VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vs-- 2164 (2342)
.. .+.+.+ ..+ .+..++.++.||.++.||.++|+.+..+......
T Consensus 132 ----------------------~~--------~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 132 ----------------------KL--------SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT 179 (377)
T ss_pred ----------------------cc--------CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee
Confidence 00 001111 111 2456777788999999999999987766432210
Q ss_pred -----EEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCC------CC---e-EEEEEccCCCEEEEEeCCCCCCC
Q 000085 2165 -----AVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLS------GS---I-GCMEISLDGHSALIGVNSSSTNN 2228 (2342)
Q Consensus 2165 -----sLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs------~~---I-tsLafSPDGk~LaSGS~DGs~d~ 2228 (2342)
...+ .++ .++.+..++.+..++.. |..+-....... .. + .+..+ .+..+++++.++....
T Consensus 180 ~~~~~sp~~-~~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 180 LRGSASPVI-ADG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAA 255 (377)
T ss_pred ecCCCCCEE-ECC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEE
Confidence 0011 122 33444444555555542 322211110000 00 0 01111 2334554443332111
Q ss_pred ---CCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2229 ---GSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2229 ---~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS 2305 (2342)
.....+|........ ..........+...||.|..+|..+++.+............+... .+..|++++
T Consensus 256 ~d~~tG~~~W~~~~~~~~------~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~ 327 (377)
T TIGR03300 256 LDLRSGRVLWKRDASSYQ------GPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD 327 (377)
T ss_pred EECCCCcEEEeeccCCcc------CceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe
Confidence 011233433211100 011111111222358999999999998876653111112222222 466899999
Q ss_pred CCCcEEEEeCCCC
Q 000085 2306 ADKQLIVFTDPAL 2318 (2342)
Q Consensus 2306 sDGsIrVWDi~sL 2318 (2342)
.||.|+++|..+.
T Consensus 328 ~~G~l~~~d~~tG 340 (377)
T TIGR03300 328 FEGYLHWLSREDG 340 (377)
T ss_pred CCCEEEEEECCCC
Confidence 9999999996554
No 299
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.61 E-value=0.00059 Score=83.94 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=103.8
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCe----EEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeCCc--eee
Q 000085 2123 ILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR----LIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV--LVA 2195 (2342)
Q Consensus 2123 Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk----lIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dlnG~--~L~ 2195 (2342)
+..+..++++++++.+..+....+++.+... ++...... ....+.+..+....+.....|.++.+++... .-.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 3445567778888888877777777765432 22222222 1344444444443333333444444443210 122
Q ss_pred eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2196 RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2196 s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
....+|-..++.|+|+||+++++++.. |..|+|-.....
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDR-----------------------------------------DEkIRvs~ypa~ 183 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADR-----------------------------------------DEKIRVSRYPAT 183 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecC-----------------------------------------CceEEEEecCcc
Confidence 334569999999999999999998852 667888777777
Q ss_pred eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2276 KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2276 k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
-.+..+..||..-|..++.-++.. |++||.|++|++||..+.+
T Consensus 184 f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 184 FVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred cchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecccCC
Confidence 777788889999999999987654 9999999999999976653
No 300
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.59 E-value=0.0022 Score=77.42 Aligned_cols=232 Identities=13% Similarity=0.076 Sum_probs=138.0
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccC---------cceeEEEEEcCCCC--EEEEEEcCCcEEEEe
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSG---------IRSSAVVSITHDKE--IITGGHVDGSIKLLT 2024 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~g---------I~Svt~VafSpDGk--lLASGS~DGsIrVWD 2024 (2342)
.|.+|++|..|+.+-+|....... .++.+......|... -..++.+.|.++++ .+...+.|.+|++|.
T Consensus 36 ~Ge~LatGdkgGRVv~f~r~~~~~-~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWK 114 (433)
T KOG1354|consen 36 YGERLATGDKGGRVVLFEREKLYK-GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWK 114 (433)
T ss_pred ccceEeecCCCCeEEEeecccccc-cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeee
Confidence 466777777777777765332111 122222222112111 01244577888776 455556799999998
Q ss_pred cCCccc-----------------------------------ceec-ccCCCCeEEEEecCCCCEEEEEeCCCceEEEecc
Q 000085 2025 SDGAKT-----------------------------------LETA-SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 2025 l~tgkl-----------------------------------l~tL-~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
+..... .+.+ .+|+--|.++.++.|+..++|+ .|=.|.+|++.
T Consensus 115 i~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnle 193 (433)
T KOG1354|consen 115 IRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLE 193 (433)
T ss_pred eeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeecccc
Confidence 642110 0111 4588889999999999988876 47889999987
Q ss_pred CCccccccc-------cCCCCCCccccccCCCCCceeec--CCCccccccCC------------------ceEEecCCCC
Q 000085 2069 RAFTSRTGT-------IEPSSGMGTPGNSIGSSTPANAS--ADKSRRRRIEG------------------PIHVLRGHHR 2121 (2342)
Q Consensus 2069 tg~~i~t~~-------~~~~~~V~svs~SpDG~~Las~s--~D~s~~~~i~~------------------~l~~L~GHs~ 2121 (2342)
-......+. .....-+++..|+|....+.+.+ .+.++..+... ...-+.+--.
T Consensus 194 i~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIs 273 (433)
T KOG1354|consen 194 IIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIIS 273 (433)
T ss_pred ccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhh
Confidence 532211110 01122355566777554443322 22223322210 0111122235
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEEC-CCCeEEEEEecCC-----------------cEEEEEecCCcEEEEEeCCCe
Q 000085 2122 EILCCCVSSDLGVVVSCSDSSDLLLHSI-RRGRLIRRLVGVD-----------------AHAVSLSSEGVIMTWNKLQHT 2183 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS~DGtIrIWDL-rTGklIrsL~gh~-----------------vssLSfSpDG~IlVwdssdGs 2183 (2342)
.|..+.|+++|+++++-+. -+|++||+ ...+.+.++.-|. -.-++|+.++..+..++-...
T Consensus 274 SISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~ 352 (433)
T KOG1354|consen 274 SISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNV 352 (433)
T ss_pred hhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccce
Confidence 7889999999999987654 59999999 5666777766553 135788888888888888888
Q ss_pred EEEEEeC
Q 000085 2184 LSSFTLN 2190 (2342)
Q Consensus 2184 I~I~dln 2190 (2342)
+++|+..
T Consensus 353 frvf~~~ 359 (433)
T KOG1354|consen 353 FRVFNLA 359 (433)
T ss_pred EEEecCC
Confidence 8888853
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.57 E-value=0.00019 Score=60.89 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=36.4
Q ss_pred CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2275 LKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2275 gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
++++.++. +|...|++++|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~-~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR-GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE-SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEc-CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 36778888 9999999999999999999999999999997
No 302
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.0015 Score=84.82 Aligned_cols=96 Identities=20% Similarity=0.309 Sum_probs=74.7
Q ss_pred cCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeE
Q 000085 1963 PASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVT 2042 (2342)
Q Consensus 1963 sSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~Vt 2042 (2342)
...++.+.||-. +|. |++....+.+. +++||+|..-+|+.|-.-|.+.+|...+.+.......|+.+|+
T Consensus 37 ~er~GSVtIfad-tGE-------Pqr~Vt~P~ha---tSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~ 105 (1416)
T KOG3617|consen 37 PERGGSVTIFAD-TGE-------PQRDVTYPVHA---TSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQ 105 (1416)
T ss_pred CCCCceEEEEec-CCC-------CCcccccceeh---hhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCce
Confidence 445667888853 222 22221122233 3499999999999999999999999888776666778999999
Q ss_pred EEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 2043 CLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2043 cLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
.+.||++|..++|+..-|.|.+|....
T Consensus 106 ~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 106 GLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eEEecCCCCeEEEcCCCceeEEEEeee
Confidence 999999999999999999999999874
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.50 E-value=0.024 Score=67.71 Aligned_cols=214 Identities=14% Similarity=0.099 Sum_probs=132.2
Q ss_pred EEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCcccccc-CCCCCceeecCCCccccccC-Cc---eEEe
Q 000085 2043 CLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNS-IGSSTPANASADKSRRRRIE-GP---IHVL 2116 (2342)
Q Consensus 2043 cLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~S-pDG~~Las~s~D~s~~~~i~-~~---l~~L 2116 (2342)
+++|.+ ++.++++--..+.|..|+..++....... .. ...+.+. +++..+++. ..+....+.. .. +...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~---~~-~~G~~~~~~~g~l~v~~-~~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL---PG-PNGMAFDRPDGRLYVAD-SGGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES---SS-EEEEEEECTTSEEEEEE-TTCEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec---CC-CceEEEEccCCEEEEEE-cCceEEEecCCCcEEEEeec
Confidence 567887 66677777678889999988764322111 11 3444455 554444443 3443333322 11 2222
Q ss_pred c--C-CCCCeEEEEEecCCCEEEEEeCC--------CcEEEEECCCCeEEEEEec-CCcEEEEEecCCcEE-EEEeCCCe
Q 000085 2117 R--G-HHREILCCCVSSDLGVVVSCSDS--------SDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVIM-TWNKLQHT 2183 (2342)
Q Consensus 2117 ~--G-Hs~~Vt~VafSPDg~lLaSGS~D--------GtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~Il-VwdssdGs 2183 (2342)
. . .....+.+++.++|++.++.... |.|..++.. ++....... ....-+++++||+.+ +.+...+.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence 1 1 34567899999999977776644 568888877 554444433 346789999999865 46677889
Q ss_pred EEEEEeC--Cceee--eec--CCC-CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccC
Q 000085 2184 LSSFTLN--GVLVA--RAK--LPL-SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVD 2256 (2342)
Q Consensus 2184 I~I~dln--G~~L~--s~~--~~H-s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~s 2256 (2342)
|..|+++ +..+. ... ... .+..-.+++..+|++.++.-
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~----------------------------------- 202 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW----------------------------------- 202 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-----------------------------------
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-----------------------------------
Confidence 9999985 32121 111 111 23478899999998777542
Q ss_pred CCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe-cCCCEEEEEe
Q 000085 2257 NNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN-KDNTNLLVST 2305 (2342)
Q Consensus 2257 s~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS-PDG~~LaSGS 2305 (2342)
..+.|.++|.. |+.+..+... ...+++++|. ++...|++.+
T Consensus 203 ------~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 203 ------GGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ------TTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred ------CCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 14679999987 8888888855 4589999994 6767666544
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0028 Score=77.95 Aligned_cols=249 Identities=14% Similarity=0.150 Sum_probs=141.4
Q ss_pred EEEEecCCcccceecccCCCCeEEEEecCCCC-EEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCcee
Q 000085 2020 IKLLTSDGAKTLETASGHCAPVTCLALSSDSN-FLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPAN 2098 (2342)
Q Consensus 2020 IrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las 2098 (2342)
+++.+..+.+..+.+.+|...|..++|||..+ ++..++.+.+|+|.|+.+...
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-------------------------- 228 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-------------------------- 228 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee--------------------------
Confidence 67777777777778889999999999999876 788899999999999988422
Q ss_pred ecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeE-EEEEe----cCCcEEE------
Q 000085 2099 ASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRL-IRRLV----GVDAHAV------ 2166 (2342)
Q Consensus 2099 ~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGkl-IrsL~----gh~vssL------ 2166 (2342)
+..+..| ..+++++|.-| ..+|+.|-..|.|.|||++..+- +..+. .+.+..+
T Consensus 229 --------------vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n 293 (463)
T KOG1645|consen 229 --------------VSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPN 293 (463)
T ss_pred --------------eeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCcc
Confidence 2223445 78999999876 56778888999999999986432 12221 1222211
Q ss_pred EEecCCcEEEEEeCCCeEEEEEeCC---ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC-----------Ccc
Q 000085 2167 SLSSEGVIMTWNKLQHTLSSFTLNG---VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG-----------SYD 2232 (2342)
Q Consensus 2167 SfSpDG~IlVwdssdGsI~I~dlnG---~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~-----------i~d 2232 (2342)
...+.|.+++.....- ..|.+.+ ...........+...++.+.+-.++++..-...-.... ...
T Consensus 294 ~~f~~gglLv~~lt~l--~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~ 371 (463)
T KOG1645|consen 294 KIFTSGGLLVFALTVL--QFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF 371 (463)
T ss_pred ccccccceEEeeehhh--hhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCc
Confidence 2333445555443322 2333321 11111111124455666666655555544322110000 000
Q ss_pred cccccCCCC----C-----CccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec-CCCEEE
Q 000085 2233 NIQGLNSKQ----S-----GTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK-DNTNLL 2302 (2342)
Q Consensus 2233 ~Lw~l~~~~----~-----~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP-DG~~La 2302 (2342)
.+|...... . ....+.+... .....+.-..+.+.+||..+++.++++. -+.+|..++... ++.-++
T Consensus 372 pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n--n~iv~~gd~tn~lil~D~~s~evvQ~l~--~~epv~Dicp~~~n~~syL 447 (463)
T KOG1645|consen 372 PVCGKRRTYFGSKQTKLSTTQAIRAVEDN--NYIVVVGDSTNELILQDPHSFEVVQTLA--LSEPVLDICPNDTNGSSYL 447 (463)
T ss_pred eeeeecccccCCcccccccccceeccccc--cEEEEecCCcceeEEeccchhheeeecc--cCcceeecceeecCCcchh
Confidence 111110000 0 0000000000 0000111146789999999999999988 447888887654 444455
Q ss_pred EEeCCCcEEEEeC
Q 000085 2303 VSTADKQLIVFTD 2315 (2342)
Q Consensus 2303 SGSsDGsIrVWDi 2315 (2342)
..-.|..++||..
T Consensus 448 a~LTd~~v~Iyk~ 460 (463)
T KOG1645|consen 448 ALLTDDRVHIYKN 460 (463)
T ss_pred hheecceEEEEec
Confidence 5566778888874
No 305
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.43 E-value=0.005 Score=73.44 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=108.7
Q ss_pred EEEEEEcCCcEEEEecCCcccceecccC---CC---CeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCC
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETASGH---CA---PVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSG 2083 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL~GH---t~---~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~ 2083 (2342)
.++-...+|.|.++..+.......+.+- .- .-.++.|++.+..++++-.+|.+.+-+.....
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~------------ 154 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMV------------ 154 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceee------------
Confidence 4555667888888876543322222221 11 13467778878888887777777633322210
Q ss_pred CccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECC-CCeEEEE-Eec
Q 000085 2084 MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIR-RGRLIRR-LVG 2160 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLr-TGklIrs-L~g 2160 (2342)
-+.++.++.|+-+++...|+. +.+++.+||.||.+..||+| .++.+.+ .+-
T Consensus 155 --------------------------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kv 208 (339)
T KOG0280|consen 155 --------------------------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKV 208 (339)
T ss_pred --------------------------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeeccee
Confidence 023456788999999999985 45789999999999999999 4444443 222
Q ss_pred CC--cEEEEEe-cCCcEEEEEeCCCeEEEEEeC--CceeeeecCCCCCCeEEEEEccCCC
Q 000085 2161 VD--AHAVSLS-SEGVIMTWNKLQHTLSSFTLN--GVLVARAKLPLSGSIGCMEISLDGH 2215 (2342)
Q Consensus 2161 h~--vssLSfS-pDG~IlVwdssdGsI~I~dln--G~~L~s~~~~Hs~~ItsLafSPDGk 2215 (2342)
|. +.++.-+ |.+.+++.+..+..|++|+.. ++++.... -.+.|+.+..+|.-.
T Consensus 209 H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 209 HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIF 266 (339)
T ss_pred eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhh
Confidence 33 3333333 467789999999999999986 55554433 458899998888544
No 306
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.018 Score=75.28 Aligned_cols=114 Identities=13% Similarity=0.062 Sum_probs=79.4
Q ss_pred EEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccccccc
Q 000085 2174 IMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQ 2253 (2342)
Q Consensus 2174 IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~ 2253 (2342)
+++.+...|+|.++++....+......|.+.|.++.|-....++-.+. +...
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsy-s~~n--------------------------- 490 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSY-SHVN--------------------------- 490 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeee-cccc---------------------------
Confidence 456677888999999876666655555999999999986665554332 1110
Q ss_pred ccCCCCccCCCCeEEEEECCCCeEE--EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2254 SVDNNRFDFPSPSICFLDLHTLKVF--HVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2254 s~ss~~ias~DGsIrIWDL~Tgk~L--~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
..... --+.+.|-|+++|-.. ..++.....+|+.+..|.-|++|+..-.|.-+-+||..+++
T Consensus 491 ~~sg~----vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 491 SASGG----VRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred ccccc----eeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccch
Confidence 00000 1346788899887532 22333456789999999999999999999999999976654
No 307
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.0084 Score=78.24 Aligned_cols=257 Identities=13% Similarity=0.103 Sum_probs=149.9
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCC------------CEEEEEeCCCceEEEecc
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDS------------NFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG------------~~LaSGS~DGTVrVWDl~ 2068 (2342)
++.|+|.| +||.|+ ...|.|.|..+.+.++++.-|...|+.+.|.|-. -.|+++...|.|.+||+.
T Consensus 20 A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~ 97 (1062)
T KOG1912|consen 20 AADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV 97 (1062)
T ss_pred ccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh
Confidence 47788877 556554 5678999999999999999999999999998721 256778888999999998
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC---C-CEEEEEeCCCcE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD---L-GVVVSCSDSSDL 2144 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD---g-~lLaSGS~DGtI 2144 (2342)
.+.. +..+..|.+++..++|-+. . ..++.-....++
T Consensus 98 ~~s~----------------------------------------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~l 137 (1062)
T KOG1912|consen 98 LASV----------------------------------------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTL 137 (1062)
T ss_pred hhhh----------------------------------------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEE
Confidence 7421 2234567778888888753 3 466666777899
Q ss_pred EEEECCCCeEEEEEecCC-c-EEEEEec-CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCC-------
Q 000085 2145 LLHSIRRGRLIRRLVGVD-A-HAVSLSS-EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDG------- 2214 (2342)
Q Consensus 2145 rIWDLrTGklIrsL~gh~-v-ssLSfSp-DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDG------- 2214 (2342)
.+|+..+|+.+....... + .++.+.| |.+-+..-...|.+.+-+.-|.. ....+..-+.++.+.
T Consensus 138 vLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s------ep~~pgk~~qI~sd~Sdl~~le 211 (1062)
T KOG1912|consen 138 VLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS------EPDVPGKEFQITSDHSDLAHLE 211 (1062)
T ss_pred EEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCC------CCCCCceeEEEecCccchhhhh
Confidence 999999999877665432 2 2344444 22222222333443333322200 011222222222221
Q ss_pred CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEE
Q 000085 2215 HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALAL 2294 (2342)
Q Consensus 2215 k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLaf 2294 (2342)
.-.++|. ..+....... +-.+ ...++|+|.-.... +......+.|+|++-..++.++.. ..+.+.-+.|
T Consensus 212 re~at~n-s~ts~~~sa~-fity----~a~faf~p~~rn~l----fi~~prellv~dle~~~~l~vvpi-er~~akfv~v 280 (1062)
T KOG1912|consen 212 RETATGN-STTSTPASAY-FITY----CAQFAFSPHWRNIL----FITFPRELLVFDLEYECCLAVVPI-ERGGAKFVDV 280 (1062)
T ss_pred hhhhccc-cccCCCcchh-HHHH----HHhhhcChhhhceE----EEEeccceEEEcchhhceeEEEEe-ccCCcceeEe
Confidence 1111110 0000000000 0000 00112333221111 111256799999999888888873 3445566677
Q ss_pred ecCC--CEEEEEeCCCcEEEEeCC
Q 000085 2295 NKDN--TNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2295 SPDG--~~LaSGSsDGsIrVWDi~ 2316 (2342)
-|++ ..|+++-.||.+.+|-..
T Consensus 281 lP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 281 LPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred ccCCCcceEEEEecCCeEEEEEee
Confidence 6665 568899999999999744
No 308
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.35 E-value=0.014 Score=69.03 Aligned_cols=216 Identities=16% Similarity=0.119 Sum_probs=140.9
Q ss_pred CEEEEEEcCCcEEEEecCCccc-ceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccccccCCCCCCcc
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKT-LETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGT 2086 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkl-l~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~s 2086 (2342)
.+||.|+.-|.+.+|...+.+. .+....|...|+-+.-..| .-.+..++.|.++++.++..+...
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~------------- 151 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK------------- 151 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc-------------
Confidence 3789999999999999986543 3444445554443322222 234667889999999988764211
Q ss_pred ccccCCCCCceeecCCCccccccCCceEEecCCCC--CeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeEEEEEe-c--
Q 000085 2087 PGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHR--EILCCCVSSDLGVVVSCSDSSDLLLHSIRR-GRLIRRLV-G-- 2160 (2342)
Q Consensus 2087 vs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~--~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT-GklIrsL~-g-- 2160 (2342)
...|.. .+.++++++|++++++.+....|..|.+.. ++.+..+. .
T Consensus 152 -----------------------------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 152 -----------------------------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred -----------------------------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 011222 277899999999999999999999998864 44433322 1
Q ss_pred -CCcEEEEEecCCcEEEEEeCCCeEEEEEeCC--ceee---eecCCCCCCeEEEEEccCCCE--EEEEeCCCCCCCCCcc
Q 000085 2161 -VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG--VLVA---RAKLPLSGSIGCMEISLDGHS--ALIGVNSSSTNNGSYD 2232 (2342)
Q Consensus 2161 -h~vssLSfSpDG~IlVwdssdGsI~I~dlnG--~~L~---s~~~~Hs~~ItsLafSPDGk~--LaSGS~DGs~d~~i~d 2232 (2342)
......+|+.....++...++|.+.+|++.. .+.. .....|.+.+..+.|++-|.. |+..
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s------------ 270 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS------------ 270 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe------------
Confidence 2357788999999999999999999999863 2222 122238999999999985532 2211
Q ss_pred cccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec------CCC-CCeEEEEEecCCCEEEEEe
Q 000085 2233 NIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL------GEG-QDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2233 ~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l------gHs-~~ItsLafSPDG~~LaSGS 2305 (2342)
. +-+.+.+.|+++++-.+.+.. .|. ..|..-.|+.++..+.+.+
T Consensus 271 ------E-----------------------hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 271 ------E-----------------------HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred ------c-----------------------CcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 0 124577888887765554432 122 3477777887777666655
Q ss_pred CC
Q 000085 2306 AD 2307 (2342)
Q Consensus 2306 sD 2307 (2342)
++
T Consensus 322 e~ 323 (344)
T KOG4532|consen 322 EL 323 (344)
T ss_pred ch
Confidence 44
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.33 E-value=0.0012 Score=77.44 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=96.1
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEE-----cCCcEEEEecCCcc
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGH-----VDGSIKLLTSDGAK 2029 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS-----~DGsIrVWDl~tgk 2029 (2342)
-.+..++.++.|+.+-++++.. .......+.....+. ...++...+++|.++. .-+..+.|+++-.+
T Consensus 99 ~~~t~V~~~~~dg~~~v~s~~~-----~~~~~~~i~~~~~~~---as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~ 170 (319)
T KOG4714|consen 99 MTDNRVCIGYADGSLAVFSTDK-----DLALMSRIPSIHSGS---ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK 170 (319)
T ss_pred ccCCceEecCCCceEEEEechH-----HHhhhhhcccccccc---cccceeecccEEecCCcceEeeccceeeecccccc
Confidence 3466777888888888887543 121111111111111 1133444556555543 22345666665433
Q ss_pred cceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2030 TLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2030 ll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
.+..-..-.+.|++++-+|. .+.+++|+.||.+.+||.++..
T Consensus 171 t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~------------------------------------- 213 (319)
T KOG4714|consen 171 TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA------------------------------------- 213 (319)
T ss_pred cccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-------------------------------------
Confidence 22211222345999999996 4567788999999999998741
Q ss_pred cCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCC
Q 000085 2109 IEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrT 2151 (2342)
.+...+..|..+|+.+-|+| ++..+++++.||.+.-||..+
T Consensus 214 --~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 214 --MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred --chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 23445688999999999998 478899999999999999764
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.31 E-value=0.00036 Score=84.01 Aligned_cols=123 Identities=15% Similarity=0.195 Sum_probs=96.0
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCc-----ccceecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGA-----KTLETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tg-----kll~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
.++.|...++++..|+..|.|.++|+..+ .+.+.+. |...|+|+..-. ++++|++.+.+|+|++||.+-.++.
T Consensus 256 fAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~ 334 (425)
T KOG2695|consen 256 FALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK 334 (425)
T ss_pred HHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc
Confidence 34667778889999999999999999764 3344444 899999998776 7899999999999999999864321
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEE--EEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILC--CCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~--VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
.-+..+.||.+.-.- +.+.++...|++++.|...+||.++.
T Consensus 335 -------------------------------------~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 335 -------------------------------------KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred -------------------------------------cceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 124566777554333 33456778899999999999999999
Q ss_pred CeEEEEEec
Q 000085 2152 GRLIRRLVG 2160 (2342)
Q Consensus 2152 GklIrsL~g 2160 (2342)
|.++.++..
T Consensus 378 ghLl~tipf 386 (425)
T KOG2695|consen 378 GHLLCTIPF 386 (425)
T ss_pred CceeeccCC
Confidence 999988864
No 311
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.27 E-value=0.0012 Score=77.32 Aligned_cols=215 Identities=12% Similarity=0.100 Sum_probs=125.4
Q ss_pred eecccCCC-CeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2032 ETASGHCA-PVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2032 ~tL~GHt~-~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
..+.+|.+ .|+.+.++- .-.|+++..++.+......++.+.... .+ -.--
T Consensus 29 D~i~~~~d~~~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~----------------~r------------t~~i 79 (319)
T KOG4714|consen 29 DEIMQHADVKLSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLW----------------ER------------DDGI 79 (319)
T ss_pred hhcccccceEEEEeechh-hheeecccchhheeeeccceEEEechh----------------hc------------ccCc
Confidence 33444544 255666653 346777777777776665554322111 00 0001
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE-EEEEecC--CcEEEEEec------CCcEEEEEeCC
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL-IRRLVGV--DAHAVSLSS------EGVIMTWNKLQ 2181 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl-IrsL~gh--~vssLSfSp------DG~IlVwdssd 2181 (2342)
.+.+.+..|+.+-.+-+.+-.+..++++..||.+.+++.+.-.. .+.+... .....+... .|.+..|...+
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 23445555655544444555577899999999999999865211 1111110 011111112 23344454433
Q ss_pred CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCcc
Q 000085 2182 HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFD 2261 (2342)
Q Consensus 2182 GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ia 2261 (2342)
..+.|++.-.............|++++-+|..+.++..+.
T Consensus 160 -~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt--------------------------------------- 199 (319)
T KOG4714|consen 160 -NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGT--------------------------------------- 199 (319)
T ss_pred -ceeeecccccccccccccccccchhhhCCcccccEEEEec---------------------------------------
Confidence 3445554321111101112345899999997777665531
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCC
Q 000085 2262 FPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK-DNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2262 s~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP-DG~~LaSGSsDGsIrVWDi~ 2316 (2342)
.||.+-+||++.......+...|..+|+.+-|+| ++..|+++++||.+.-||-.
T Consensus 200 -~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 200 -DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred -CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 2788999999987655555558999999999999 56889999999999999954
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.27 E-value=0.035 Score=76.26 Aligned_cols=212 Identities=12% Similarity=0.058 Sum_probs=123.7
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
+..+.|.-++.-++.+..+|.|.+-|..+.... ....-.+.|.+++||||++.++-.+.++++.+-+-.- ..+.....
T Consensus 71 i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f-~~i~E~~L 148 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF-EPIAEKPL 148 (1265)
T ss_pred eEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc-cchhcccc
Confidence 344778888888888888999999988775322 2222456799999999999999999888887644311 11100000
Q ss_pred CCCCCCccccccCCCCCceeecCCCc-cccc-------cCCceEEec--C---CCCCeEEEEEecCCCEEEEE-----eC
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKS-RRRR-------IEGPIHVLR--G---HHREILCCCVSSDLGVVVSC-----SD 2140 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s-~~~~-------i~~~l~~L~--G---Hs~~Vt~VafSPDg~lLaSG-----S~ 2140 (2342)
.....+.+..+ ..+|... -..+ ........+ + -.+.=+.|+|--||.++++. ..
T Consensus 149 -------~~d~~~~sk~v-~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 149 -------DADDERKSKFV-NVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred -------ccccccccccc-eecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 00000111111 1112110 0000 000000000 0 12223578999999998873 22
Q ss_pred CCcEEEEECCCCeEEEEEec--CCcEEEEEecCCcEEEEE---eCCCeEEEEEeCCceeeeecCC---CCCCeEEEEEcc
Q 000085 2141 SSDLLLHSIRRGRLIRRLVG--VDAHAVSLSSEGVIMTWN---KLQHTLSSFTLNGVLVARAKLP---LSGSIGCMEISL 2212 (2342)
Q Consensus 2141 DGtIrIWDLrTGklIrsL~g--h~vssLSfSpDG~IlVwd---ssdGsI~I~dlnG~~L~s~~~~---Hs~~ItsLafSP 2212 (2342)
-..|+|||-. |.+-.+-.. ....+++|-|.|..+..- ..++.|..|.-||-.-.....+ ....|..++|+.
T Consensus 221 ~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred ceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC
Confidence 3799999976 433222111 125788999999877653 3446788999888543333332 233499999999
Q ss_pred CCCEEEEEe
Q 000085 2213 DGHSALIGV 2221 (2342)
Q Consensus 2213 DGk~LaSGS 2221 (2342)
++..|++-.
T Consensus 300 ~sdiLAv~~ 308 (1265)
T KOG1920|consen 300 NSDILAVVT 308 (1265)
T ss_pred CCCceeeee
Confidence 999998754
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.25 E-value=0.039 Score=64.77 Aligned_cols=212 Identities=16% Similarity=0.117 Sum_probs=117.9
Q ss_pred CCcEEEEecCCcccceecccC--CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCC
Q 000085 2017 DGSIKLLTSDGAKTLETASGH--CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll~tL~GH--t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~ 2094 (2342)
+|+|..||..+|+.+....-- .....+.. .+++.++++++.++.+..||..+++......
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~----------------- 63 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATA-VPDGGRVYVASGDGNLYALDAKTGKVLWRFD----------------- 63 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETE-EEETTEEEEEETTSEEEEEETTTSEEEEEEE-----------------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceE-EEeCCEEEEEcCCCEEEEEECCCCCEEEEee-----------------
Confidence 688999999998887665421 12222222 2356788888999999999998875433220
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE-ecC----C-cEEEEE
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL-VGV----D-AHAVSL 2168 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL-~gh----~-vssLSf 2168 (2342)
+.+..... . ..++..++.++.|+.++.+|..+|+.+... ... . ......
T Consensus 64 ---------------------~~~~~~~~--~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~ 118 (238)
T PF13360_consen 64 ---------------------LPGPISGA--P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSP 118 (238)
T ss_dssp ---------------------CSSCGGSG--E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEE
T ss_pred ---------------------ccccccce--e--eecccccccccceeeeEecccCCcceeeeeccccccccccccccCc
Confidence 00000000 1 223556677778889999999999998884 322 1 111222
Q ss_pred ecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCC---C------CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccC
Q 000085 2169 SSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLS---G------SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLN 2238 (2342)
Q Consensus 2169 SpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs---~------~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~ 2238 (2342)
..+|..++....++.+..++.. |+.+-....... . .+.+-.+..++ .++.++
T Consensus 119 ~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~----------------- 180 (238)
T PF13360_consen 119 AVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSS----------------- 180 (238)
T ss_dssp EEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEEC-----------------
T ss_pred eEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEc-----------------
Confidence 2225445555556666666653 443333222110 1 11122222233 333332
Q ss_pred CCCCCccccccccccccCCCCccCCCCe-EEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2239 SKQSGTEDFDLASDQSVDNNRFDFPSPS-ICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2239 ~~~~~~iaFspd~~~s~ss~~ias~DGs-IrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
.++. +.+ |+.+++.+.... .+ .+.. ....++..|++++.|+.|..||..+
T Consensus 181 ------------------------~~g~~~~~-d~~tg~~~w~~~-~~--~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 181 ------------------------GDGRVVAV-DLATGEKLWSKP-IS--GIYS-LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp ------------------------CTSSEEEE-ETTTTEEEEEEC-SS---ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred ------------------------CCCeEEEE-ECCCCCEEEEec-CC--CccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence 1333 555 999998665333 12 2222 1456778888888999999999665
Q ss_pred C
Q 000085 2318 L 2318 (2342)
Q Consensus 2318 L 2318 (2342)
.
T Consensus 232 G 232 (238)
T PF13360_consen 232 G 232 (238)
T ss_dssp T
T ss_pred C
Confidence 5
No 314
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0075 Score=72.04 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCccc--ceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKT--LETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkl--l~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
..++.|++.+.-++++-.+|.+.+-+...+.. ++.++.|.-..+-++|+.. -+.++|||.|+.+..||++... +
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---T 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---c
Confidence 34688899999999999999999776665544 4588999999999999863 4689999999999999998421 0
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCC-Ce
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRR-GR 2153 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrT-Gk 2153 (2342)
..| +.-+-|...|.++.-+| .+.+++||+.|-.|++||.|+ ++
T Consensus 201 -----------------------------~i~------~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 201 -----------------------------FIW------HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred -----------------------------eee------ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 001 11255888999998775 578999999999999999984 44
Q ss_pred EEE
Q 000085 2154 LIR 2156 (2342)
Q Consensus 2154 lIr 2156 (2342)
.+.
T Consensus 246 Pl~ 248 (339)
T KOG0280|consen 246 PLF 248 (339)
T ss_pred ccc
Confidence 443
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0012 Score=81.72 Aligned_cols=219 Identities=16% Similarity=0.109 Sum_probs=138.9
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEE
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~ 2115 (2342)
-|.+.|+.+..+ -.++++++|.||.++.|.-..-.. -..+..
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG-------------------------------------vEfVKh 48 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG-------------------------------------VEFVKH 48 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccc-------------------------------------eeehhh
Confidence 488888887665 568999999999999997543100 022345
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeEEEEEecC--CcEEEEEecCC----cEEEEEeCCCeEEEEE
Q 000085 2116 LRGHHREILCCCVSSDLGVVVSCSD-SSDLLLHSIRRGRLIRRLVGV--DAHAVSLSSEG----VIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPDg~lLaSGS~-DGtIrIWDLrTGklIrsL~gh--~vssLSfSpDG----~IlVwdssdGsI~I~d 2188 (2342)
+..|-..|.+++.+-++.++.|++. |..++++|+.+-..+.-++.. ...+-.+...| .+-+-...++.+.+++
T Consensus 49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD 128 (558)
T KOG0882|consen 49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVD 128 (558)
T ss_pred hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEEC
Confidence 6778889999999999999999887 999999999876554333221 11122222233 2333334556666666
Q ss_pred eCCce--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe
Q 000085 2189 LNGVL--VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2189 lnG~~--L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
-.+.. ......-|..+|.++.+++-+..+++....|... .|....+ ..| .++.
T Consensus 129 ~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVE------yWs~e~~----~qf---------------Pr~~ 183 (558)
T KOG0882|consen 129 GFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVE------YWSAEGP----FQF---------------PRTN 183 (558)
T ss_pred CcCCcCccceecccccCceEEEEeeccccceeeccccceeE------eecCCCc----ccC---------------cccc
Confidence 54322 1212222899999999999999888775444422 2222210 000 0111
Q ss_pred EEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2267 ICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2267 IrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
.-|.+.+-.-+..+. ......+++.|+|+|..+.+-+.|..|+++...+..
T Consensus 184 -l~~~~K~eTdLy~f~-K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 184 -LNFELKHETDLYGFP-KAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred -ccccccccchhhccc-ccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 113333333333333 345567899999999999999999999999976654
No 316
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.17 E-value=0.022 Score=67.31 Aligned_cols=189 Identities=8% Similarity=-0.014 Sum_probs=114.8
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
....|+.++.-+.+.+|...+. ..... ....+..++.-+.-.|.+ .--+..++.|.++++.+++.+.....+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn-~~h~~----~cd~snn~v~~~~r~cd~--~~~~~i~sndht~k~~~~~~~s~~~~~- 154 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTN-DGHLY----QCDVSNNDVTLVKRYCDL--KFPLNIASNDHTGKTMVVSGDSNKFAV- 154 (344)
T ss_pred cccEEEeccccceeeeecccCc-cccee----eecccccchhhhhhhccc--ccceeeccCCcceeEEEEecCccccee-
Confidence 3455667767778889986541 11111 111222222211111111 113555678999999988765433322
Q ss_pred cCCC--CeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2036 GHCA--PVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2036 GHt~--~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
|.. .+..+++++|++++++.+....|..|.+..... ++. .
T Consensus 155 -h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se----------------------y~~---------------~ 196 (344)
T KOG4532|consen 155 -HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE----------------------YIE---------------N 196 (344)
T ss_pred -eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc----------------------eee---------------e
Confidence 333 388999999999999999999999998876311 000 0
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE-EEEe---c-C--CcEEEEEecCCc--EEEEEeCCCeE
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLI-RRLV---G-V--DAHAVSLSSEGV--IMTWNKLQHTL 2184 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklI-rsL~---g-h--~vssLSfSpDG~--IlVwdssdGsI 2184 (2342)
..+...++.-.+..|+.....+|++..||++.|||++..... .... . | .++.+.|++-|. ++++.-.-+.+
T Consensus 197 ~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~ 276 (344)
T KOG4532|consen 197 IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRV 276 (344)
T ss_pred eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceE
Confidence 112223344568889999999999999999999999875432 2221 1 2 257788888663 45555445566
Q ss_pred EEEEeC
Q 000085 2185 SSFTLN 2190 (2342)
Q Consensus 2185 ~I~dln 2190 (2342)
++.++.
T Consensus 277 hv~D~R 282 (344)
T KOG4532|consen 277 HVVDTR 282 (344)
T ss_pred EEEEcc
Confidence 666664
No 317
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.10 E-value=0.00045 Score=89.83 Aligned_cols=211 Identities=17% Similarity=0.154 Sum_probs=139.8
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
+...++..|+..-||++|+-+.++|+.|+..|.|+++++.+|..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~------------------------------------ 1135 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM------------------------------------ 1135 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc------------------------------------
Confidence 34567788999999999999999999999999999999988632
Q ss_pred cCCceEEecCCCCCeEEEEEecCCCEEEEEeCCC--cEEEEECCC-CeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEE
Q 000085 2109 IEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSS--DLLLHSIRR-GRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG--tIrIWDLrT-GklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
.....+|..+|+-+.-+.||...++.+.-. -..+|++.+ +...+++. +..++.|+..-...+.+.......
T Consensus 1136 ----e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~--ed~~vkFsn~~q~r~~gt~~d~a~ 1209 (1516)
T KOG1832|consen 1136 ----EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD--EDKAVKFSNSLQFRALGTEADDAL 1209 (1516)
T ss_pred ----cccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc--ccceeehhhhHHHHHhcccccceE
Confidence 223578999999999999998877665433 467899864 44555554 345667776665566666556677
Q ss_pred EEEeCC-ceeeeecCC---CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc----------ccccccc
Q 000085 2186 SFTLNG-VLVARAKLP---LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT----------EDFDLAS 2251 (2342)
Q Consensus 2186 I~dlnG-~~L~s~~~~---Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~----------iaFspd~ 2251 (2342)
+|++.. .++.....+ ....-++..|+|+..+++ ++|. +|+...+..-+ -.|+|.+
T Consensus 1210 ~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndGv--------LWDvR~~~aIh~FD~ft~~~~G~FHP~g 1278 (1516)
T KOG1832|consen 1210 LYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDGV--------LWDVRIPEAIHRFDQFTDYGGGGFHPSG 1278 (1516)
T ss_pred EEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCce--------eeeeccHHHHhhhhhheecccccccCCC
Confidence 888753 222221211 223347889999999888 3333 46655442111 1233333
Q ss_pred ccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2252 DQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS 2304 (2342)
Q Consensus 2252 ~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG 2304 (2342)
....-+ -.|||++|.+.++.++ .-.-+.|.|+..|..++..
T Consensus 1279 ~eVIIN---------SEIwD~RTF~lLh~VP---~Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1279 NEVIIN---------SEIWDMRTFKLLHSVP---SLDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred ceEEee---------chhhhhHHHHHHhcCc---cccceEEEeccCccchhhh
Confidence 221111 2479999999888776 2234678888888765543
No 318
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.10 E-value=0.026 Score=73.98 Aligned_cols=118 Identities=11% Similarity=0.171 Sum_probs=88.5
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccce-ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE-TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~-tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
.--+++..+++++.|+.-|.+++|+-.+++... ...+-.+.++.+.++++..++|.|+..|.|.|+-++.+.....
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~--- 113 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL--- 113 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc---
Confidence 345677888999999999999999988776543 3334445566677888888889999999999998876321100
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
..+... -..|...|+|++|++++..+++|..-|+|...-+.+
T Consensus 114 -----------------~~~t~~--------------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 -----------------DYVTPC--------------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred -----------------eeeccc--------------cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 000000 123889999999999999999999999999988876
No 319
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.07 E-value=0.22 Score=59.14 Aligned_cols=69 Identities=10% Similarity=0.003 Sum_probs=53.3
Q ss_pred CCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 2007 DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
-|++++.|+..|.+++.+.++|.....+..-...=......+++..+..|+.|++...-|..+..++.+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 477899999999999999999977766553322112233466899999999999999999988766554
No 320
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.05 E-value=0.052 Score=63.69 Aligned_cols=119 Identities=13% Similarity=0.037 Sum_probs=74.8
Q ss_pred cCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCC
Q 000085 2005 THDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGM 2084 (2342)
Q Consensus 2005 SpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V 2084 (2342)
.+++..+++++.++.++.||..+|+.+..... .+.+.... ..++..++.++.|+.+..+|..++.......
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~------- 103 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIY------- 103 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEE-------
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeec-------
Confidence 33566666678999999999999988766554 22211111 2245677777788999999988875433210
Q ss_pred ccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 000085 2085 GTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV 2161 (2342)
Q Consensus 2085 ~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh 2161 (2342)
... ..... .........+++.++.+..+|.|..+|+++|+.+......
T Consensus 104 -------------------------~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 104 -------------------------LTS---SPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp -------------------------E-S---SCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred -------------------------ccc---ccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 000 00000 1111122223788888888999999999999998887653
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.0091 Score=78.75 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=122.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEec
Q 000085 2038 CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLR 2117 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~ 2117 (2342)
.+.++|++++ +++|+-|+.+|.|.+.+..... .+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~------------------------------------------~~~~ 74 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP------------------------------------------KTNF 74 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc------------------------------------------cccc
Confidence 5678899987 7899999999999999876521 1112
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecC-----CcEEEEEeCCCeEEEEEeC-
Q 000085 2118 GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSE-----GVIMTWNKLQHTLSSFTLN- 2190 (2342)
Q Consensus 2118 GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpD-----G~IlVwdssdGsI~I~dln- 2190 (2342)
.|... ..+|.+++|||.||+|.|-.+-+.+...++.-+ .+.+++++|| .+.++.++..| +.++.-+
T Consensus 75 ~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~w 147 (846)
T KOG2066|consen 75 DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNW 147 (846)
T ss_pred ccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhh
Confidence 23332 567999999999999999999888877766544 4788999997 34556666666 6666543
Q ss_pred -CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEE
Q 000085 2191 -GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICF 2269 (2342)
Q Consensus 2191 -G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrI 2269 (2342)
|...........++|.++.|. |.+++-++ |--|+|
T Consensus 148 lgnk~~v~l~~~eG~I~~i~W~--g~lIAWan------------------------------------------d~Gv~v 183 (846)
T KOG2066|consen 148 LGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN------------------------------------------DDGVKV 183 (846)
T ss_pred hcCccceeeecCccceEEEEec--CcEEEEec------------------------------------------CCCcEE
Confidence 222221122257899999996 77887554 233788
Q ss_pred EECCCCeEEEEEecCCCC-----CeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2270 LDLHTLKVFHVLKLGEGQ-----DITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2270 WDL~Tgk~L~tL~lgHs~-----~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
||..+.+.+..++..+.. --..+.|.++.+.+ -|..-+|+|..+.
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV--IGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV--IGWGDSVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCCeEE--EecCCeEEEEEEe
Confidence 888888877777644421 13456777666432 3444466666654
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.019 Score=76.00 Aligned_cols=167 Identities=10% Similarity=0.085 Sum_probs=115.7
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccc
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTP 2087 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~sv 2087 (2342)
+++++-|+-+|.|++++.... . .+...|... ..+|.+++|||.||+|.|-.+.+....++. .....+.++
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--df~rpiksi 118 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY--DFKRPIKSI 118 (846)
T ss_pred cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE--ecCCcceeE
Confidence 678999999999999997643 2 444445544 567999999999999999988876554433 234456777
Q ss_pred cccCC-----CCCceeecCCCccc----cccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 000085 2088 GNSIG-----SSTPANASADKSRR----RRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2088 s~SpD-----G~~Las~s~D~s~~----~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL 2158 (2342)
+++|+ .+.+++++..+... |--......+..-.++|.++.|. |++++-++.+| |+|||+.+++.+..+
T Consensus 119 al~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 119 ALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNI 195 (846)
T ss_pred EeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeecc
Confidence 88886 34455555544322 32222223466668899999995 88888888775 899999999988877
Q ss_pred ecCC--------cEEEEEecCCcEEE-EEeCCCeEEEEEeC
Q 000085 2159 VGVD--------AHAVSLSSEGVIMT-WNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2159 ~gh~--------vssLSfSpDG~IlV-wdssdGsI~I~dln 2190 (2342)
.... ...+.|.++.++++ |+ .+|.+..+.
T Consensus 196 ~~p~~~~R~e~fpphl~W~~~~~LVIGW~---d~v~i~~I~ 233 (846)
T KOG2066|consen 196 PPPSQSVRPELFPPHLHWQDEDRLVIGWG---DSVKICSIK 233 (846)
T ss_pred CCCCCCCCcccCCCceEecCCCeEEEecC---CeEEEEEEe
Confidence 6532 24677887776554 54 346666654
No 323
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.98 E-value=0.16 Score=61.22 Aligned_cols=28 Identities=14% Similarity=0.332 Sum_probs=25.6
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAK 2029 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgk 2029 (2342)
++||||+.+||.+...|+|+++|+.+..
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEecccce
Confidence 8999999999999999999999987643
No 324
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.98 E-value=0.003 Score=76.37 Aligned_cols=160 Identities=11% Similarity=0.117 Sum_probs=112.5
Q ss_pred EEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCC
Q 000085 2014 GHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS 2093 (2342)
Q Consensus 2014 GS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG 2093 (2342)
.+.+-.|-+-|+.+|.. +.+. ....|.++.|...+++++.|.+.|.|.+.|++......
T Consensus 230 ~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~------------------- 288 (425)
T KOG2695|consen 230 VGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN------------------- 288 (425)
T ss_pred ccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC-------------------
Confidence 34567788889888643 3333 56779999999889999999999999999998741100
Q ss_pred CCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeE---EEEEecCCc----EE
Q 000085 2094 STPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRGRL---IRRLVGVDA----HA 2165 (2342)
Q Consensus 2094 ~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTGkl---IrsL~gh~v----ss 2165 (2342)
..+.+.+ -|...|+|+..-. +++.+++.+.+|+|++||++--++ +++..+|-. .-
T Consensus 289 ----------------~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~ 351 (425)
T KOG2695|consen 289 ----------------GWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLP 351 (425)
T ss_pred ----------------CcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccc
Confidence 0122233 3889999998766 788999999999999999997766 888888742 22
Q ss_pred EEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCC---CCCCeEEEEEc
Q 000085 2166 VSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLP---LSGSIGCMEIS 2211 (2342)
Q Consensus 2166 LSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~---Hs~~ItsLafS 2211 (2342)
+-+.+...+++....|...++|.++ |..+.+...+ ....+.+++|.
T Consensus 352 ~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 352 AHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 3345555566667778888899987 5555544433 22345555553
No 325
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.96 E-value=0.032 Score=68.61 Aligned_cols=181 Identities=14% Similarity=0.122 Sum_probs=121.0
Q ss_pred EEEcCCCCEEEEEE-----cCCcEEEEecC-CcccceecccCCCCeEEEEecCCCCEEEEEe------------------
Q 000085 2002 VSITHDKEIITGGH-----VDGSIKLLTSD-GAKTLETASGHCAPVTCLALSSDSNFLVTGS------------------ 2057 (2342)
Q Consensus 2002 VafSpDGklLASGS-----~DGsIrVWDl~-tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS------------------ 2057 (2342)
-+||+||++|++.- ..|.|-|||.. +.+.+..+..|--.-..+.+.|||+.|+.+-
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 57999999888764 35789999998 5567777777765556788999998777653
Q ss_pred CCCceEEEeccCCcccccc-c--cCCCCCCccccccCCCCCceeecCCCccc--------cccCCceEEe-------cCC
Q 000085 2058 QDTTILLWRIHRAFTSRTG-T--IEPSSGMGTPGNSIGSSTPANASADKSRR--------RRIEGPIHVL-------RGH 2119 (2342)
Q Consensus 2058 ~DGTVrVWDl~tg~~i~t~-~--~~~~~~V~svs~SpDG~~Las~s~D~s~~--------~~i~~~l~~L-------~GH 2119 (2342)
.+-.+..-|..++..+.+. . ..+...+.-+++..+|..+...-+.+-.. ++....+..+ ..-
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l 215 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRL 215 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhh
Confidence 1233444555666544432 1 33455677788888877665554432211 1112222222 223
Q ss_pred CCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeE
Q 000085 2120 HREILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTL 2184 (2342)
Q Consensus 2120 s~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI 2184 (2342)
.+.|-+|+++.++.++ +|+-..|.+.+||..+|+++.......+.-++...++ +++..-.|.+
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~--f~~ssG~G~~ 279 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG--FLVSSGQGQL 279 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc--eEEeCCCccE
Confidence 4678999999999877 4555788999999999999998887777777777777 4444444543
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.92 E-value=0.024 Score=74.38 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=80.3
Q ss_pred EEEEcCCCCEEEEEE----cCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 2001 VVSITHDKEIITGGH----VDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2001 ~VafSpDGklLASGS----~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
..+|+|...+++.++ ..|+|.||- ++|++.....- .-.+++++|+|..-.|+.|=.-|.+.+|...+...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~---- 93 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET---- 93 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCcee----
Confidence 356788888777765 467888884 45655433221 12367799999988888888889999998776321
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
-.....|..+|..+.||++|..++|+..-|.|.+|...
T Consensus 94 ------------------------------------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 ------------------------------------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ------------------------------------eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 12235689999999999999999999999999999764
No 327
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.77 E-value=0.01 Score=78.89 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=100.0
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC---------CCceEEEeccCCcc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ---------DTTILLWRIHRAFT 2072 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~---------DGTVrVWDl~tg~~ 2072 (2342)
.-.-.+++++.+|...|+|.+-|..+.+.++++..|++.|..+.. .|+.|+||+. |..|+|||++....
T Consensus 181 ~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 181 TIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred EEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 334556789999999999999999999999999999999987766 5999999974 66789999998654
Q ss_pred ccccccCCCCCCccccccCCCC-CceeecCCCc-cccc---cCCc---eEEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSS-TPANASADKS-RRRR---IEGP---IHVLRGHHREILCCCVSSDLGVVVSCSDSSDL 2144 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~-~Las~s~D~s-~~~~---i~~~---l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtI 2144 (2342)
+... ..+.+...+.+.|.-. .+++.+..+. ...+ ...+ +..+......+..++++++++.++.|..+|.|
T Consensus 259 l~PI--~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 259 LSPI--QFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred cCCc--ccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 3322 1222234445555322 2233322221 1122 1122 22233334558999999999999999999999
Q ss_pred EEEEC
Q 000085 2145 LLHSI 2149 (2342)
Q Consensus 2145 rIWDL 2149 (2342)
.+|.-
T Consensus 337 ~~wa~ 341 (1118)
T KOG1275|consen 337 NLWAD 341 (1118)
T ss_pred eeecC
Confidence 99973
No 328
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.016 Score=72.30 Aligned_cols=185 Identities=13% Similarity=0.049 Sum_probs=120.3
Q ss_pred CCCEEEEEEcCCcEEEEecCC---cccceecccCCCCeEEEEecCCCCEEEEEeC-CCceEEEeccCCcccccc-ccCCC
Q 000085 2007 DKEIITGGHVDGSIKLLTSDG---AKTLETASGHCAPVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTG-TIEPS 2081 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~t---gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~-~~~~~ 2081 (2342)
-.+++.+++.||.++.|--.. -+.+..+..|...|.+++.+-+|..+.|++. |..++++|+.+.....-. ....+
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP 98 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP 98 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence 456899999999999997543 2345667789999999999999999999887 999999999875433222 11112
Q ss_pred CCCccccccCCC--CCceeecCCCcc--cccc----CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--
Q 000085 2082 SGMGTPGNSIGS--STPANASADKSR--RRRI----EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR-- 2151 (2342)
Q Consensus 2082 ~~V~svs~SpDG--~~Las~s~D~s~--~~~i----~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT-- 2151 (2342)
..+.++ .++.. ..+++...+... ..+. ......-.-|..+|.++.+.+-++.++|....|.|..|....
T Consensus 99 g~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~ 177 (558)
T KOG0882|consen 99 GFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPF 177 (558)
T ss_pred CceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcc
Confidence 211111 11111 122222222111 1111 122333345999999999999999999999999999999862
Q ss_pred ----CeEEEEEec-----------CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCc
Q 000085 2152 ----GRLIRRLVG-----------VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV 2192 (2342)
Q Consensus 2152 ----GklIrsL~g-----------h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~ 2192 (2342)
+.....++. ....++.++++|..+..-..+..|+++...+.
T Consensus 178 qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 178 QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred cCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 222222221 12578899999976655556777888777643
No 329
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.73 E-value=0.015 Score=77.27 Aligned_cols=177 Identities=14% Similarity=0.160 Sum_probs=113.5
Q ss_pred CCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCcc
Q 000085 2007 DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGT 2086 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~s 2086 (2342)
++..++.|+-...+..+|+.+.+..+...-....|+-+.. +++++.+|...|+|.+-|.++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~---------------- 207 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF---------------- 207 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC----------------
Confidence 4556777777778888999988877766544445666655 5899999999999999998874
Q ss_pred ccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC---------CCcEEEEECCCCeEEEE
Q 000085 2087 PGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD---------SSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2087 vs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~---------DGtIrIWDLrTGklIrs 2157 (2342)
+.++++..|++.|..+.+ .|+.++|||. |..|+|||+|.-+.+.-
T Consensus 208 ------------------------~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P 261 (1118)
T KOG1275|consen 208 ------------------------ETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP 261 (1118)
T ss_pred ------------------------ceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence 456778999999987654 6899999875 66789999987665544
Q ss_pred EecC-CcEEEEEecCC-cEEEEEeCCCeEEEEE---eCCceeeee-cCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2158 LVGV-DAHAVSLSSEG-VIMTWNKLQHTLSSFT---LNGVLVARA-KLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2158 L~gh-~vssLSfSpDG-~IlVwdssdGsI~I~d---lnG~~L~s~-~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
+.-+ ....+.|.|.= ..++.....|..+..+ +........ ..+....+.++++|++|+.++.|..+|..+
T Consensus 262 I~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~ 337 (1118)
T KOG1275|consen 262 IQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVN 337 (1118)
T ss_pred cccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEe
Confidence 3321 11222222221 1112222233333333 111111111 111345599999999999999997777633
No 330
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.61 E-value=0.23 Score=61.99 Aligned_cols=262 Identities=13% Similarity=0.114 Sum_probs=145.5
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe----------CCCceEEEeccCCccccccccC------CC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS----------QDTTILLWRIHRAFTSRTGTIE------PS 2081 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS----------~DGTVrVWDl~tg~~i~t~~~~------~~ 2081 (2342)
+.++|+|.++++.+..+..- -.-.+.++||++.+++++ +.-.|.+||..+......+... ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 46889999998887766532 233467899999988753 3456899999986544433111 11
Q ss_pred CCCccccccCCCCCceeecCCCc---ccccc--CCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECC-CCeE
Q 000085 2082 SGMGTPGNSIGSSTPANASADKS---RRRRI--EGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIR-RGRL 2154 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s---~~~~i--~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLr-TGkl 2154 (2342)
.......++.|++++.+....-. ...++ .+.+..+.. . -|.-+-|. .+-+.+-|.||.+.-..+. .|+.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--P--GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--P--GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--T--SEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--C--CEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 23445567778887765543311 11121 111111111 1 13333343 2568888999999988887 5665
Q ss_pred EEEEec--C--C---cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeec---C-C--------CCCCeEEEEEccCCC
Q 000085 2155 IRRLVG--V--D---AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAK---L-P--------LSGSIGCMEISLDGH 2215 (2342)
Q Consensus 2155 IrsL~g--h--~---vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~---~-~--------Hs~~ItsLafSPDGk 2215 (2342)
.++... + . ...-+++..+..++|-+-+|.++..++.|....... . . -.+.-.-+++++...
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence 533211 1 1 112234455666677777888887777654321100 0 0 012223355555444
Q ss_pred EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe
Q 000085 2216 SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN 2295 (2342)
Q Consensus 2216 ~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS 2295 (2342)
.|++--..+. .|.++.+ ...|.++|+.+++.+..+.+.| ++.+|.++
T Consensus 251 rlyvLMh~g~--------~gsHKdp-----------------------gteVWv~D~~t~krv~Ri~l~~--~~~Si~Vs 297 (342)
T PF06433_consen 251 RLYVLMHQGG--------EGSHKDP-----------------------GTEVWVYDLKTHKRVARIPLEH--PIDSIAVS 297 (342)
T ss_dssp EEEEEEEE----------TT-TTS------------------------EEEEEEEETTTTEEEEEEEEEE--EESEEEEE
T ss_pred eEEEEecCCC--------CCCccCC-----------------------ceEEEEEECCCCeEEEEEeCCC--ccceEEEc
Confidence 4433321111 0111111 2468889999999999998544 58899999
Q ss_pred cCCC-EEEEE-eCCCcEEEEeCCCC
Q 000085 2296 KDNT-NLLVS-TADKQLIVFTDPAL 2318 (2342)
Q Consensus 2296 PDG~-~LaSG-SsDGsIrVWDi~sL 2318 (2342)
.|.+ .|++. ..++.|.|||..+.
T Consensus 298 qd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 298 QDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp SSSS-EEEEEETTTTEEEEEETTT-
T ss_pred cCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 9876 55544 45899999996655
No 331
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.61 E-value=0.0044 Score=80.16 Aligned_cols=184 Identities=14% Similarity=0.172 Sum_probs=112.8
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC-CCEEEEEEcCCcEEEEecCCc-ccceecc
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD-KEIITGGHVDGSIKLLTSDGA-KTLETAS 2035 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD-GklLASGS~DGsIrVWDl~tg-kll~tL~ 2035 (2342)
..+++++-|..+..|+....... +-..-..++ + ..-|.|+-- +..+|+ +..+.|+|||...| ..+.+++
T Consensus 128 dVlatcsvdt~vh~wd~rSp~~p----~ys~~~w~s-~---asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K 198 (1081)
T KOG0309|consen 128 DVLATCSVDTYVHAWDMRSPHRP----FYSTSSWRS-A---ASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLK 198 (1081)
T ss_pred cceeeccccccceeeeccCCCcc----eeeeecccc-c---CceeeecccCcchhhh-ccCCceEEEeccCCCcceEEec
Confidence 45677888888888875541110 000001111 1 123677654 445554 55778999999865 5678899
Q ss_pred cCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCce------------eecCC
Q 000085 2036 GHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPA------------NASAD 2102 (2342)
Q Consensus 2036 GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~La------------s~s~D 2102 (2342)
+|...|..++|.. ....+.+++.|++|+.||.................+....+.|-|.-.. ....+
T Consensus 199 ~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n 278 (1081)
T KOG0309|consen 199 GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCEN 278 (1081)
T ss_pred ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccc
Confidence 9999999999975 3457889999999999999865332222222222333333333222110 00111
Q ss_pred Ccccc---ccCCceEEecCCCCCeEEEEEecCC----------CEEEEEeCCCcEEEEECC
Q 000085 2103 KSRRR---RIEGPIHVLRGHHREILCCCVSSDL----------GVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2103 ~s~~~---~i~~~l~~L~GHs~~Vt~VafSPDg----------~lLaSGS~DGtIrIWDLr 2150 (2342)
....| +...+++.+.||++.|...-|-..+ -.++|=|.|.++++|-+.
T Consensus 279 ~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 279 SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 11112 3467899999999998776664322 268999999999999875
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.57 E-value=0.067 Score=70.32 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=76.6
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce---
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE--- 2032 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~--- 2032 (2342)
.++.++-|++-+.+.+|+.+++.... +.. .++......++++++..++|+|+..|.|.|+-+..+....
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~-------~~~-~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRK-------LKN-EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhc-------ccc-cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 45667777777888888866532211 111 0122233457789999999999999999999887643211
Q ss_pred --ec-ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 2033 --TA-SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2033 --tL-~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
.. ..|...|||++|++|+..+++|..-|+|..-.++.
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11 23788999999999999999999999999888877
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.56 E-value=0.36 Score=62.23 Aligned_cols=256 Identities=14% Similarity=0.164 Sum_probs=122.5
Q ss_pred CeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc-ccccCCCCCCccccccC-CCCCceeecCCCccc--cccCCceEE
Q 000085 2040 PVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR-TGTIEPSSGMGTPGNSI-GSSTPANASADKSRR--RRIEGPIHV 2115 (2342)
Q Consensus 2040 ~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~-t~~~~~~~~V~svs~Sp-DG~~Las~s~D~s~~--~~i~~~l~~ 2115 (2342)
.|+++.|+++..-|+.|...|.|.||.+...+.-. .... .........++. ++....+...+.... ..--.+...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQP-PDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCC-cccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58999999999999999999999999987643221 0000 000000000000 000000000000000 000134556
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC----------cEEEEEe-----cCC---cEEEE
Q 000085 2116 LRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD----------AHAVSLS-----SEG---VIMTW 2177 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~----------vssLSfS-----pDG---~IlVw 2177 (2342)
+....++|++++.| |=.+++.|..+|.+.|.|+|....+..-.-.+ ++.+.|+ .|+ -.++.
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 66678999999997 66789999999999999999888877632111 3444443 344 34556
Q ss_pred EeCCCeEEEEEeC----Cceee---eecCCCCCCeEEEE-EccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccc
Q 000085 2178 NKLQHTLSSFTLN----GVLVA---RAKLPLSGSIGCME-ISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDL 2249 (2342)
Q Consensus 2178 dssdGsI~I~dln----G~~L~---s~~~~Hs~~ItsLa-fSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFsp 2249 (2342)
+...|.+.+|.+. |.... .....+.+.|..+. ++.+...-+.+. ...+..+...
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At---------~~~~~~l~~g--------- 222 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALAT---------ISAMQGLSKG--------- 222 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-B---------HHHHHGGGGT---------
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCc---------hhHhhccccC---------
Confidence 6777998888763 21110 00112444444443 212211111010 0000111100
Q ss_pred ccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe-----cCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2250 ASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN-----KDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2250 d~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS-----PDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
. ......+...+..++|+...+.+..++.. .....+..+.+- ..+..|++-..+|.|++|.+|.|+
T Consensus 223 --~-~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 223 --I-SIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp -------EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred --C-CcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 0 00111223357889999999888777665 333334445552 356678888999999999999886
No 334
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.54 E-value=0.28 Score=62.16 Aligned_cols=258 Identities=12% Similarity=0.043 Sum_probs=139.6
Q ss_pred cCCCCEEEEEE---------cCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 2005 THDKEIITGGH---------VDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 2005 SpDGklLASGS---------~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
|||+++++... ..+.+.|||+.+++....... ...+....|||+|+.++-.. ++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57777665532 346789999998765544433 56788999999999998875 67899998766532211
Q ss_pred cccC----------------CCCCCccccccCCCCCceeecCCCccc--ccc---------------------CC--c--
Q 000085 2076 GTIE----------------PSSGMGTPGNSIGSSTPANASADKSRR--RRI---------------------EG--P-- 2112 (2342)
Q Consensus 2076 ~~~~----------------~~~~V~svs~SpDG~~Las~s~D~s~~--~~i---------------------~~--~-- 2112 (2342)
...+ .-..-..+-|||||+.++....|.... ... +. +
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 1111 022345677999999997765542211 000 00 0
Q ss_pred -eEEe----------------cCCCCCeEEEEEecCCCEEE--EEeCCC---cEEEEECCCCeEEEEEec--CC----cE
Q 000085 2113 -IHVL----------------RGHHREILCCCVSSDLGVVV--SCSDSS---DLLLHSIRRGRLIRRLVG--VD----AH 2164 (2342)
Q Consensus 2113 -l~~L----------------~GHs~~Vt~VafSPDg~lLa--SGS~DG---tIrIWDLrTGklIrsL~g--h~----vs 2164 (2342)
+..+ ..-...+..+.|.+++..++ ..+.+. .+.+.|..++.+...+.. .. ..
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 0000 11233467788888877333 333333 456677777654333322 11 23
Q ss_pred EEEEe-cCCcEEEEE-eCCCe--EEEEEeCCceeeeecCCCCCCeEE-EEEccCCCEEEEEeCCCCCCCCCcccccccCC
Q 000085 2165 AVSLS-SEGVIMTWN-KLQHT--LSSFTLNGVLVARAKLPLSGSIGC-MEISLDGHSALIGVNSSSTNNGSYDNIQGLNS 2239 (2342)
Q Consensus 2165 sLSfS-pDG~IlVwd-ssdGs--I~I~dlnG~~L~s~~~~Hs~~Its-LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~ 2239 (2342)
...+. +++.-++|- ..+|- |.+++..+...... ....-.|.. +.++++++.+.-.+....
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l-T~G~~~V~~i~~~d~~~~~iyf~a~~~~-------------- 303 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL-TSGDWEVTSILGWDEDNNRIYFTANGDN-------------- 303 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES-S-SSS-EEEEEEEECTSSEEEEEESSGG--------------
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc-ccCceeecccceEcCCCCEEEEEecCCC--------------
Confidence 44443 666655554 45664 45555556554432 224455644 677888777653331100
Q ss_pred CCCCccccccccccccCCCCccCCCCeEEEEECC-CCeEEEEEecCCCCCe-EEEEEecCCCEEEEE
Q 000085 2240 KQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH-TLKVFHVLKLGEGQDI-TALALNKDNTNLLVS 2304 (2342)
Q Consensus 2240 ~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~-Tgk~L~tL~lgHs~~I-tsLafSPDG~~LaSG 2304 (2342)
.....|+.-++. .+. +..+. ..... ..+.|||+|++++..
T Consensus 304 ----------------------p~~r~lY~v~~~~~~~-~~~LT--~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 304 ----------------------PGERHLYRVSLDSGGE-PKCLT--CEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp ----------------------TTSBEEEEEETTETTE-EEESS--TTSSTTEEEEE-TTSSEEEEE
T ss_pred ----------------------CCceEEEEEEeCCCCC-eEecc--CCCCCceEEEECCCCCEEEEE
Confidence 013457777777 444 34444 22222 599999999988744
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.50 E-value=0.1 Score=72.05 Aligned_cols=201 Identities=14% Similarity=0.150 Sum_probs=120.1
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEec
Q 000085 2038 CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLR 2117 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~ 2117 (2342)
.+.|.++.|..+++-++.+..+|.|.+-|..+... ........
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~--eivg~vd~----------------------------------- 110 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL--EIVGNVDN----------------------------------- 110 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce--eeeeeccC-----------------------------------
Confidence 36799999999999999999999999987776421 11122233
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC----CC-------------------CeEEEEEec--------------
Q 000085 2118 GHHREILCCCVSSDLGVVVSCSDSSDLLLHSI----RR-------------------GRLIRRLVG-------------- 2160 (2342)
Q Consensus 2118 GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDL----rT-------------------GklIrsL~g-------------- 2160 (2342)
.|.+++|+||+.+++-.+.++++.+-+- -. |+.-..|++
T Consensus 111 ----GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e 186 (1265)
T KOG1920|consen 111 ----GISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE 186 (1265)
T ss_pred ----ceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence 4445555555555544444444443221 00 000001111
Q ss_pred ---------CCcEEEEEecCCcEEEEE-----eCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2161 ---------VDAHAVSLSSEGVIMTWN-----KLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2161 ---------h~vssLSfSpDG~IlVwd-----ssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
..-..++|--||.+++.. .....+++|+-+|. +.....+..+.=.+++|-|.|..+++-....+
T Consensus 187 k~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s- 264 (1265)
T KOG1920|consen 187 KALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS- 264 (1265)
T ss_pred ccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccch-hhcccCcccccccceeecCCCCeEeeeeecCC-
Confidence 012458888999888763 22368999998853 33333334455678999999998886643222
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC---eEEEEEecCCCCCeEEEEEecCCCEEEE
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL---KVFHVLKLGEGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg---k~L~tL~lgHs~~ItsLafSPDG~~LaS 2303 (2342)
|+.|.++.-+.. ...-.++ .....|..++|+.++..|++
T Consensus 265 -------------------------------------d~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 265 -------------------------------------DSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNSNSDILAV 306 (1265)
T ss_pred -------------------------------------CCcEEEEecCCccccccccCCc-ccccchheeeecCCCCceee
Confidence 445666654332 2111122 12234899999999999887
Q ss_pred ---EeCCCcEEEEeCCCCC
Q 000085 2304 ---STADKQLIVFTDPALS 2319 (2342)
Q Consensus 2304 ---GSsDGsIrVWDi~sLs 2319 (2342)
......|++|...+..
T Consensus 307 ~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 307 VTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eecccccceEEEEEecCeE
Confidence 4444559999977654
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.47 E-value=0.011 Score=76.66 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=60.7
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
.+.|++++|+...++.|+.||+|.+||...+.. .+..+.-..+.++|+|+|..++.|+.-|.+.+||+.-.
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 466799999999999999999999999876532 23345566899999999999999999999999999864
No 337
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.39 E-value=0.28 Score=62.96 Aligned_cols=141 Identities=13% Similarity=0.135 Sum_probs=74.3
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCC--C--------CeE-EEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHC--A--------PVT-CLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt--~--------~Vt-cLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
+..+++++.+|.+.-+|..+|+.+-...-.. . .+. .+.. ++..++.++.++.+..+|..+++...+.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 4466667778889999998888765432211 0 010 1112 3567778889999999999998766554
Q ss_pred ccCCCCCCcc-c--------cccCCCCCceeecCCCccccccCCc--eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 000085 2077 TIEPSSGMGT-P--------GNSIGSSTPANASADKSRRRRIEGP--IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLL 2145 (2342)
Q Consensus 2077 ~~~~~~~V~s-v--------s~SpDG~~Las~s~D~s~~~~i~~~--l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIr 2145 (2342)
.... .+.+ . ....++...+....++...|..... .....+...++ + .+..++.++.+|.+.
T Consensus 147 ~~~~--~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~----v--~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 147 KVAG--EALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA----T--AFGGAIVGGDNGRVS 218 (394)
T ss_pred cCCC--ceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE----E--ECCEEEEEcCCCEEE
Confidence 2111 1110 0 0111222222222233334433211 00111111111 1 134567788889999
Q ss_pred EEECCCCeEEEEE
Q 000085 2146 LHSIRRGRLIRRL 2158 (2342)
Q Consensus 2146 IWDLrTGklIrsL 2158 (2342)
.+|..+|+.+...
T Consensus 219 a~d~~~G~~~W~~ 231 (394)
T PRK11138 219 AVLMEQGQLIWQQ 231 (394)
T ss_pred EEEccCChhhhee
Confidence 9999998876554
No 338
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.25 E-value=1.6 Score=56.33 Aligned_cols=244 Identities=12% Similarity=0.092 Sum_probs=123.6
Q ss_pred eeEEEEEcCCCCEEEEE-EcCC----cEEEEecCCccccee-cccCCCCeEEEEecCCCCEEEEEeCCC-----------
Q 000085 1998 SSAVVSITHDKEIITGG-HVDG----SIKLLTSDGAKTLET-ASGHCAPVTCLALSSDSNFLVTGSQDT----------- 2060 (2342)
Q Consensus 1998 Svt~VafSpDGklLASG-S~DG----sIrVWDl~tgkll~t-L~GHt~~VtcLAfSPDG~~LaSGS~DG----------- 2060 (2342)
....+++||||+++|.+ +..| .++++|+.+|+.+.. +..- .-..+.|.+|++.|+....|.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34458899999988765 4444 499999999976543 2221 123499999988877665443
Q ss_pred ceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCC--eEEEEEecCCCEEEEE
Q 000085 2061 TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHRE--ILCCCVSSDLGVVVSC 2138 (2342)
Q Consensus 2061 TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~--Vt~VafSPDg~lLaSG 2138 (2342)
.|..|++.+... .....+.+.... ...+..++|+++++..
T Consensus 203 ~v~~~~~gt~~~--------------------------------------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~ 244 (414)
T PF02897_consen 203 QVYRHKLGTPQS--------------------------------------EDELVFEEPDEPFWFVSVSRSKDGRYLFIS 244 (414)
T ss_dssp EEEEEETTS-GG--------------------------------------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEE
T ss_pred EEEEEECCCChH--------------------------------------hCeeEEeecCCCcEEEEEEecCcccEEEEE
Confidence 244555444211 111223332222 4577788999887643
Q ss_pred e-CC---CcEEEEECCCC-----eEEEEEecC-CcEEEEEecCCcEEEEEeC---CCeEEEEEeCCce---eeeecCCCC
Q 000085 2139 S-DS---SDLLLHSIRRG-----RLIRRLVGV-DAHAVSLSSEGVIMTWNKL---QHTLSSFTLNGVL---VARAKLPLS 2202 (2342)
Q Consensus 2139 S-~D---GtIrIWDLrTG-----klIrsL~gh-~vssLSfSpDG~IlVwdss---dGsI~I~dlnG~~---L~s~~~~Hs 2202 (2342)
+ .. ..+.+.|+..+ ......... ..........+.+++.... .+.|...++.... -.....++.
T Consensus 245 ~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~ 324 (414)
T PF02897_consen 245 SSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED 324 (414)
T ss_dssp EESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S
T ss_pred EEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC
Confidence 3 22 34788888764 222222222 2222222334444443322 2455555554321 111223344
Q ss_pred CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEe
Q 000085 2203 GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLK 2282 (2342)
Q Consensus 2203 ~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~ 2282 (2342)
..+.-..+...+.+|+.....+. ...|+++|+..+.....+.
T Consensus 325 ~~~~l~~~~~~~~~Lvl~~~~~~--------------------------------------~~~l~v~~~~~~~~~~~~~ 366 (414)
T PF02897_consen 325 EDVSLEDVSLFKDYLVLSYRENG--------------------------------------SSRLRVYDLDDGKESREIP 366 (414)
T ss_dssp SSEEEEEEEEETTEEEEEEEETT--------------------------------------EEEEEEEETT-TEEEEEEE
T ss_pred CceeEEEEEEECCEEEEEEEECC--------------------------------------ccEEEEEECCCCcEEeeec
Confidence 43333333334555554432111 3469999998455555555
Q ss_pred cCCCCCeEEEEEecCCCEEEEE--e--CCCcEEEEeCCCCC
Q 000085 2283 LGEGQDITALALNKDNTNLLVS--T--ADKQLIVFTDPALS 2319 (2342)
Q Consensus 2283 lgHs~~ItsLafSPDG~~LaSG--S--sDGsIrVWDi~sLs 2319 (2342)
..-.+.|..+...+++..+... | .-+++..||..+..
T Consensus 367 ~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 367 LPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp SSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred CCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 4444556666666666544422 2 34577778865554
No 339
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.02 E-value=1.5 Score=53.13 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=45.5
Q ss_pred cCCCCEEEEEEcCCcEEEEecC-CcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc
Q 000085 2005 THDKEIITGGHVDGSIKLLTSD-GAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 2005 SpDGklLASGS~DGsIrVWDl~-tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
...++.|+.|+.+| +.+++.. .....+.. +...|+.+...++-+.|+.-+ |+++.++++....
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~ 67 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLE 67 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhc
Confidence 44577889998888 8999983 33333332 233499999999877777665 5999999998743
No 340
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.0014 Score=85.65 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=62.2
Q ss_pred ccccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHhccccCCCCCCC-CCCCCCcce
Q 000085 1260 KDFNALSYKFIAVLVASFALARNMQRSEIDRRSQVDLISRHRWCT-GMRAWRKLIHCLIEMKCLFGPFED-HLSDPRRIF 1337 (2342)
Q Consensus 1260 r~~~e~~~k~~~~~v~~~~lar~~~R~E~~r~~~l~~~~~~r~~~-a~r~W~ki~~~Lt~ERGlwGPw~~-~~~s~~~~f 1337 (2342)
||-+.+-+|+-+++.+- .+|..--|+-+.....+..+.+..+.. +...|.-...+|.+|||+|.--.. ...+ ..
T Consensus 2434 rd~skldlkhw~q~ner-ryalev~rdams~elrvvrqnkyg~ilhaes~w~thlqqlvhergifpmr~s~g~ed---~~ 2509 (2799)
T KOG1788|consen 2434 RDTSKLDLKHWEQVNER-RYALEVVRDAMSAELRVVRQNKYGLILHAESVWPTHLQQLVHERGIFPMRISHGVED---LK 2509 (2799)
T ss_pred ccccccchHHHHHHhHH-HHHHHHHHHHhhhhheeeecccceEEEeecccchHHHHHHHHhcCCcceecccCcCC---cc
Confidence 44556666776665442 223333333333333334344444433 788999999999999999842222 1222 35
Q ss_pred eEeeccCCccccceeecccCCCCC
Q 000085 1338 WKLDFMESSSRMRRCLRRNYMGSD 1361 (2342)
Q Consensus 1338 WKLD~tEd~sRMRrRLvRNy~fs~ 1361 (2342)
|.|..-|+|.|||+||.|...-.+
T Consensus 2510 wqlcpiegpyrmrkklercklkid 2533 (2799)
T KOG1788|consen 2510 WQLCPIEGPYRMRKKLERCKLKID 2533 (2799)
T ss_pred eeecCCcCcHHHHHHHHhhhhhhH
Confidence 999999999999999999876443
No 341
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.97 E-value=0.011 Score=46.73 Aligned_cols=38 Identities=45% Similarity=0.768 Sum_probs=33.7
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEe
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWR 2066 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWD 2066 (2342)
+....+..|...|+++.|++++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556678999999999999999999999999999996
No 342
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.13 Score=64.15 Aligned_cols=70 Identities=10% Similarity=0.184 Sum_probs=62.0
Q ss_pred EEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCc
Q 000085 2001 VVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 2001 ~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
.++|||..+ ++..++.++.|+|.|+.+...+.++..| ..+++++|.-|. ++|+.|-..|.|.|+|++...
T Consensus 198 dlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 198 DLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred hhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 399999998 8889999999999999999888888888 789999998764 678888899999999998743
No 343
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.89 E-value=0.27 Score=64.25 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=62.7
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2118 GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2118 GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
.....|.|++++|+.+.++.|+.||+|.+||..++.....-..--...++|+|+|.+++.+...|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 46778999999999999999999999999999877544332223368999999999999999999999999753
No 344
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.87 E-value=0.47 Score=60.26 Aligned_cols=284 Identities=12% Similarity=0.063 Sum_probs=119.0
Q ss_pred EEcCCCC-EEEEEEcCCc--EEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2003 SITHDKE-IITGGHVDGS--IKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2003 afSpDGk-lLASGS~DGs--IrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
+|.+||+ +|.++..||. +.+.|+.+++..+--.+-.+......++++++.++-.....+|+--|+.+.+..... ..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy-~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY-EV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE-E-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE-EC
Confidence 5789997 4555555664 666688888766544432232334567788888877666678888888875432211 11
Q ss_pred CCCCCccccc--cCCCCCceeecCCCc-----cccc------------------c-CCceEEecCCCCCeEEEEEecCCC
Q 000085 2080 PSSGMGTPGN--SIGSSTPANASADKS-----RRRR------------------I-EGPIHVLRGHHREILCCCVSSDLG 2133 (2342)
Q Consensus 2080 ~~~~V~svs~--SpDG~~Las~s~D~s-----~~~~------------------i-~~~l~~L~GHs~~Vt~VafSPDg~ 2133 (2342)
...-+....+ +.|+..++....... ..|. + .+....+..-...+..+.|+|...
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP 200 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence 1211211222 334444322211100 0000 0 122233333345667888998655
Q ss_pred EEEEEeC----CC-cEEEEECCC-CeEEEEEecCC----cEEEEEecCCcEEEEEeC--CC---eEEEEEeCCceeeeec
Q 000085 2134 VVVSCSD----SS-DLLLHSIRR-GRLIRRLVGVD----AHAVSLSSEGVIMTWNKL--QH---TLSSFTLNGVLVARAK 2198 (2342)
Q Consensus 2134 lLaSGS~----DG-tIrIWDLrT-GklIrsL~gh~----vssLSfSpDG~IlVwdss--dG---sI~I~dlnG~~L~s~~ 2198 (2342)
.++.=|. |. .-+||-+++ |...+.+..+. +..=-|++||..+.+... .+ .|.-++.....-..
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-- 278 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-- 278 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE--
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE--
Confidence 4444433 32 247787764 44444433222 233357899998888643 22 23333443211111
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEE
Q 000085 2199 LPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVF 2278 (2342)
Q Consensus 2199 ~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L 2278 (2342)
........-.-.++||++++.-+.+...+. ... .....-.+.-|+++++..+...
T Consensus 279 ~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v---------~~~----------------~~~~~~~~p~i~~~~~~~~~~~ 333 (386)
T PF14583_consen 279 LMEMPWCSHFMSSPDGKLFVGDGGDAPVDV---------ADA----------------GGYKIENDPWIYLFDVEAGRFR 333 (386)
T ss_dssp EEEE-SEEEEEE-TTSSEEEEEE--------------------------------------------EEEEEETTTTEEE
T ss_pred EEeCCceeeeEEcCCCCEEEecCCCCCccc---------ccc----------------ccceecCCcEEEEeccccCcee
Confidence 111123344556789988874332111000 000 0000012456888999887653
Q ss_pred EEEe--------cCCCC-CeEEEEEecCCCEEE-EEeCCCcEEEEe
Q 000085 2279 HVLK--------LGEGQ-DITALALNKDNTNLL-VSTADKQLIVFT 2314 (2342)
Q Consensus 2279 ~tL~--------lgHs~-~ItsLafSPDG~~La-SGSsDGsIrVWD 2314 (2342)
.... .++.. .=....|+|||++++ ++...|...||-
T Consensus 334 ~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 334 KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp EEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred eeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 2222 01111 124578999999877 455677777765
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.85 E-value=0.22 Score=64.76 Aligned_cols=158 Identities=18% Similarity=0.162 Sum_probs=95.8
Q ss_pred EEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe---CC-CceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2020 IKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS---QD-TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2020 IrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS---~D-GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
+.+-|.+ |...+.+..-...+..-+|+|++..++..+ .. ..+.++++.++....
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--------------------- 232 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--------------------- 232 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce---------------------
Confidence 4444444 444555554556677788999988766542 22 357777877753211
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCc--EEEEECCCCeEEEEEecCC--cEEEEEec
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSD--LLLHSIRRGRLIRRLVGVD--AHAVSLSS 2170 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGt--IrIWDLrTGklIrsL~gh~--vssLSfSp 2170 (2342)
+..+.++. ..-+|+|||+.|+ +...||. |++.|+.+++..+ +.... ...=+|+|
T Consensus 233 -----------------i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp 291 (425)
T COG0823 233 -----------------ILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP 291 (425)
T ss_pred -----------------eeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC
Confidence 11223333 3456899998775 4556664 6667877776433 43221 23567899
Q ss_pred CCcEEEEEeCC-C--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2171 EGVIMTWNKLQ-H--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2171 DG~IlVwdssd-G--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
||+.+++.... | .|.+++.+|......... .+.-..-.|+|||++++..+
T Consensus 292 dG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~-~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 292 DGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS-GGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred CCCEEEEEeCCCCCcceEEECCCCCceeEeecc-CCCCcCccCCCCCCEEEEEe
Confidence 99988887543 4 466666667655444332 22222778999999999775
No 346
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.48 Score=63.85 Aligned_cols=132 Identities=13% Similarity=0.203 Sum_probs=83.4
Q ss_pred CeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCC
Q 000085 2040 PVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH 2119 (2342)
Q Consensus 2040 ~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH 2119 (2342)
.|+|+ ++.+..+|.|+.||.|.+.+-.- ..++.++.+
T Consensus 27 ~isc~--~s~~~~vvigt~~G~V~~Ln~s~-----------------------------------------~~~~~fqa~ 63 (933)
T KOG2114|consen 27 AISCC--SSSTGSVVIGTADGRVVILNSSF-----------------------------------------QLIRGFQAY 63 (933)
T ss_pred ceeEE--cCCCceEEEeeccccEEEecccc-----------------------------------------eeeehheec
Confidence 56654 66788999999999887665332 111233444
Q ss_pred CCC-eEEEEEecCCCEEEEEeCCC-----cEEEEECCCC------eEEE--EEec-------CCcEEEEEecCCcEEEEE
Q 000085 2120 HRE-ILCCCVSSDLGVVVSCSDSS-----DLLLHSIRRG------RLIR--RLVG-------VDAHAVSLSSEGVIMTWN 2178 (2342)
Q Consensus 2120 s~~-Vt~VafSPDg~lLaSGS~DG-----tIrIWDLrTG------klIr--sL~g-------h~vssLSfSpDG~IlVwd 2178 (2342)
... |+.+-...+..++++.+.|+ .++|||+... +++. ++.+ ....+++++.+-..++.+
T Consensus 64 ~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~G 143 (933)
T KOG2114|consen 64 EQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCG 143 (933)
T ss_pred chhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEE
Confidence 444 33333333345677776664 4899998632 3442 2222 125789999999999999
Q ss_pred eCCCeEEEEEeCCceee----ee--cCCCCCCeEEEEEccCCCE
Q 000085 2179 KLQHTLSSFTLNGVLVA----RA--KLPLSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2179 ssdGsI~I~dlnG~~L~----s~--~~~Hs~~ItsLafSPDGk~ 2216 (2342)
..+|.|..+.-+ .++ +. ......+|+.+++..+++.
T Consensus 144 f~nG~V~~~~GD--i~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 144 FTNGLVICYKGD--ILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred ecCcEEEEEcCc--chhccccceeeeccCCCCceeeEEecCCce
Confidence 999998776532 111 11 1124678999999988877
No 347
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.64 E-value=1 Score=60.29 Aligned_cols=149 Identities=14% Similarity=0.065 Sum_probs=83.9
Q ss_pred CeEEEEEecCCCEEEEEeCCC----cEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCC-----c
Q 000085 2122 EILCCCVSSDLGVVVSCSDSS----DLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG-----V 2192 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS~DG----tIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG-----~ 2192 (2342)
....++++++|+++++.+.+. ++..-+..+...+..+.... .-.+.++|+.... .++.+.+++... .
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~ 311 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGS 311 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--HHHhhhCCCEEEE--CCCEEEEEECCccccCCc
Confidence 344566667777777766321 22222222222222111110 0122345654443 245566666543 1
Q ss_pred eeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEEC
Q 000085 2193 LVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDL 2272 (2342)
Q Consensus 2193 ~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL 2272 (2342)
.+. ...+-......+.++|||+++++++. . +++|.|.|+
T Consensus 312 ~v~-~yIPVGKsPHGV~vSPDGkylyVank--l--------------------------------------S~tVSVIDv 350 (635)
T PRK02888 312 ALT-RYVPVPKNPHGVNTSPDGKYFIANGK--L--------------------------------------SPTVTVIDV 350 (635)
T ss_pred ceE-EEEECCCCccceEECCCCCEEEEeCC--C--------------------------------------CCcEEEEEC
Confidence 111 12224567788999999999997741 1 456777777
Q ss_pred CCCe------------EEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2273 HTLK------------VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2273 ~Tgk------------~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
.+.+ .+..... +..-...+|.++|....|---|..|..|++..
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 6644 2444442 34456778999998777888999999999543
No 348
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=4.4 Score=52.29 Aligned_cols=237 Identities=14% Similarity=0.142 Sum_probs=148.3
Q ss_pred EEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCE-EEEEeCCCceEEEeccCCccccccccC
Q 000085 2002 VSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNF-LVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2002 VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~-LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
+.+.+++. ..++-.+...+.+.+............-...-.++++++++.. .++...+..|.+.|..+....+..
T Consensus 36 v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~--- 112 (381)
T COG3391 36 VAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI--- 112 (381)
T ss_pred eEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe---
Confidence 66777775 3333333334555544422111111111133456788888874 445555688888885553221111
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCeEEE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD---SSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~---DGtIrIWDLrTGklIr 2156 (2342)
..|. ....++++++++.++.+.. ++++.+.|..++..+.
T Consensus 113 ------------------------------------~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 113 ------------------------------------PVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ------------------------------------eecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 1111 4467889999877765554 7899999999999888
Q ss_pred EEecC-CcEEEEEecCCc-EEEEEeCCCeEEEEEeCCceeee-e---cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCC
Q 000085 2157 RLVGV-DAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVLVAR-A---KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGS 2230 (2342)
Q Consensus 2157 sL~gh-~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~L~s-~---~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i 2230 (2342)
+.... ....++++|+|. +++.+..++.+.+++.++..+.. . ...-......+.++++|.++...- ++.
T Consensus 155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~-~~~----- 228 (381)
T COG3391 155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAN-DGS----- 228 (381)
T ss_pred EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEe-ccC-----
Confidence 85432 347899999998 56666678899999987655542 1 011234557789999999877653 111
Q ss_pred cccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEE-EecCCCCCeEEEEEecCCCEEEEEeC-CC
Q 000085 2231 YDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHV-LKLGEGQDITALALNKDNTNLLVSTA-DK 2308 (2342)
Q Consensus 2231 ~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~t-L~lgHs~~ItsLafSPDG~~LaSGSs-DG 2308 (2342)
.++.+.+.|..++..... ...+.. ....+.++|+|..+.+... .+
T Consensus 229 --------------------------------~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~ 275 (381)
T COG3391 229 --------------------------------GSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGG 275 (381)
T ss_pred --------------------------------CCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCC
Confidence 046788888888877665 232222 4567899999999888844 47
Q ss_pred cEEEEeCCCC
Q 000085 2309 QLIVFTDPAL 2318 (2342)
Q Consensus 2309 sIrVWDi~sL 2318 (2342)
.+.+-|....
T Consensus 276 ~V~vid~~~~ 285 (381)
T COG3391 276 TVSVIDGATD 285 (381)
T ss_pred eEEEEeCCCC
Confidence 8888885543
No 349
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.52 E-value=1.5 Score=53.28 Aligned_cols=228 Identities=17% Similarity=0.203 Sum_probs=122.1
Q ss_pred EEEcCCCC-EEEEEEcCCc-EEEEecCCccccee--------cccCCCCeEEEEecCCCCEEEEEeCC-----CceEEEe
Q 000085 2002 VSITHDKE-IITGGHVDGS-IKLLTSDGAKTLET--------ASGHCAPVTCLALSSDSNFLVTGSQD-----TTILLWR 2066 (2342)
Q Consensus 2002 VafSpDGk-lLASGS~DGs-IrVWDl~tgkll~t--------L~GHt~~VtcLAfSPDG~~LaSGS~D-----GTVrVWD 2066 (2342)
++++|.-. -++.+-.-|+ ..++|.++++...+ +.||. .|||||.+|+..-.| |.|-|||
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 45555543 3444444444 56788887766544 34553 589999999876443 6788888
Q ss_pred ccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-------
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS------- 2139 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS------- 2139 (2342)
.+.+... +..+.+|.-....+.+.+||+.++.+.
T Consensus 147 ~r~~fqr---------------------------------------vgE~~t~GiGpHev~lm~DGrtlvvanGGIethp 187 (366)
T COG3490 147 AREGFQR---------------------------------------VGEFSTHGIGPHEVTLMADGRTLVVANGGIETHP 187 (366)
T ss_pred cccccce---------------------------------------ecccccCCcCcceeEEecCCcEEEEeCCceeccc
Confidence 8753211 112223333333444445554444332
Q ss_pred -----------CCCcEEEEECCCCeEEEEEec------CCcEEEEEecCCcEEEEEeCCCe------EEEEEeCCceeee
Q 000085 2140 -----------DSSDLLLHSIRRGRLIRRLVG------VDAHAVSLSSEGVIMTWNKLQHT------LSSFTLNGVLVAR 2196 (2342)
Q Consensus 2140 -----------~DGtIrIWDLrTGklIrsL~g------h~vssLSfSpDG~IlVwdssdGs------I~I~dlnG~~L~s 2196 (2342)
..-.+.+.|..+|.++..... ..+..+...+||++.+-....|. +.-....|+.+.-
T Consensus 188 dfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~ 267 (366)
T COG3490 188 DFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEF 267 (366)
T ss_pred ccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcc
Confidence 122344455566666544332 23678888999987654322221 1111112333222
Q ss_pred ecCC------CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2197 AKLP------LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2197 ~~~~------Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
...+ ....|-+++.+.+..+++..+- .-+...+|
T Consensus 268 ~~~pee~~~~~anYigsiA~n~~~glV~lTSP----------------------------------------~GN~~vi~ 307 (366)
T COG3490 268 LDLPEEQTAAFANYIGSIAANRRDGLVALTSP----------------------------------------RGNRAVIW 307 (366)
T ss_pred cCCCHHHHHHHHhhhhheeecccCCeEEEecC----------------------------------------CCCeEEEE
Confidence 2111 2345666666655555443321 13467899
Q ss_pred ECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2271 DLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2271 DL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
|..+|.++...... .+..++- ...-+++.+.+|.+++++-...+
T Consensus 308 da~tG~vv~~a~l~---daaGva~--~~~gf~vssg~G~~~~~s~~~~s 351 (366)
T COG3490 308 DAATGAVVSEAALP---DAAGVAA--AKGGFAVSSGQGRIIFYSRAARS 351 (366)
T ss_pred EcCCCcEEeccccc---cccccee--ccCceEEecCCceEEeccccccC
Confidence 99999987654421 2223333 33448888889999988755443
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.51 E-value=1.4 Score=57.85 Aligned_cols=214 Identities=12% Similarity=0.060 Sum_probs=109.9
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEP 2080 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~ 2080 (2342)
.+.++|+|++++.+ .||...|+.....+... .+.-...+|.+.+ .+++-...++|.|+.--.......
T Consensus 37 ~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~----- 104 (443)
T PF04053_consen 37 SLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKS----- 104 (443)
T ss_dssp EEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-------
T ss_pred eEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceE-----
Confidence 48899999988874 58888888843322221 2334567888854 466666688898863222111000
Q ss_pred CCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 000085 2081 SSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG 2160 (2342)
Q Consensus 2081 ~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g 2160 (2342)
+.. ...+..+-. |.++...+.+ .|.+||+.+++.++++..
T Consensus 105 -----------------------------------i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v 144 (443)
T PF04053_consen 105 -----------------------------------IKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV 144 (443)
T ss_dssp ---------------------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS
T ss_pred -----------------------------------EcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec
Confidence 000 011222221 6666666554 899999999999999997
Q ss_pred CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCc------------eeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCC
Q 000085 2161 VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV------------LVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNN 2228 (2342)
Q Consensus 2161 h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~------------~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~ 2228 (2342)
..+..+.|+++|..++.-+.+ .+.+++.+-. .+.... .....|.+.+|..| -++.+..
T Consensus 145 ~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d-~fiYtT~------- 214 (443)
T PF04053_consen 145 SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIH-EISERIKSGCWVED-CFIYTTS------- 214 (443)
T ss_dssp -E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT-EEEEE-T-------
T ss_pred CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEE-EecceeEEEEEEcC-EEEEEcC-------
Confidence 778999999999988877544 5566655433 111110 01467888888766 3333221
Q ss_pred CCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2229 GSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2229 ~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG 2308 (2342)
+.|+. +-.|+ ..++. .-..++.=+.+.+....++....|+
T Consensus 215 ------------------------------------~~lkY--l~~Ge-~~~i~-~ld~~~yllgy~~~~~~ly~~Dr~~ 254 (443)
T PF04053_consen 215 ------------------------------------NHLKY--LVNGE-TGIIA-HLDKPLYLLGYLPKENRLYLIDRDG 254 (443)
T ss_dssp ------------------------------------TEEEE--EETTE-EEEEE-E-SS--EEEEEETTTTEEEEE-TT-
T ss_pred ------------------------------------CeEEE--EEcCC-cceEE-EcCCceEEEEEEccCCEEEEEECCC
Confidence 12332 11222 12222 1234566677778777888999999
Q ss_pred cEEEEeCC
Q 000085 2309 QLIVFTDP 2316 (2342)
Q Consensus 2309 sIrVWDi~ 2316 (2342)
.|..+.++
T Consensus 255 ~v~~~~ld 262 (443)
T PF04053_consen 255 NVISYELD 262 (443)
T ss_dssp -EEEEE--
T ss_pred CEEEEEEC
Confidence 99999854
No 351
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.34 E-value=0.043 Score=43.21 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=33.3
Q ss_pred eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2276 KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2276 k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
+++..+. .|...|+++.|++++..+++++.||.+++|+
T Consensus 3 ~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLK-GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEE-ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4556666 7888999999999999999999999999996
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.24 E-value=4.4 Score=52.85 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=45.5
Q ss_pred EEEcCCCCEEEEEEcC----------C-cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 2002 VSITHDKEIITGGHVD----------G-SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2002 VafSpDGklLASGS~D----------G-sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
++.+|.|-.||....+ . .|+||+.. |+.+.++.--.+.|.++.|+.+ ..|+.-..||+++++|+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCC
Confidence 4555555555544332 2 59999975 4556555433389999999875 5677778999999999875
No 353
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.23 E-value=3.7 Score=54.64 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=41.6
Q ss_pred CEEEEEEcCCcEEEEecCCcccceecccCCCC-----eE-EEEecCCCCEEEEEe---------CCCceEEEeccCCccc
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKTLETASGHCAP-----VT-CLALSSDSNFLVTGS---------QDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkll~tL~GHt~~-----Vt-cLAfSPDG~~LaSGS---------~DGTVrVWDl~tg~~i 2073 (2342)
..++.++.++.|+-+|.++|+.+-........ |. ...+. +..++.++ .++.+...|..+++..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 56777788999999999999887655432210 11 11222 24455554 3677888888887655
Q ss_pred ccc
Q 000085 2074 RTG 2076 (2342)
Q Consensus 2074 ~t~ 2076 (2342)
...
T Consensus 189 W~~ 191 (488)
T cd00216 189 WRF 191 (488)
T ss_pred eEe
Confidence 544
No 354
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.20 E-value=3.2 Score=55.24 Aligned_cols=281 Identities=12% Similarity=0.026 Sum_probs=138.9
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCCC------CeE--EEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHCA------PVT--CLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt~------~Vt--cLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
+..+..++.++.++-.|..+|+.+-....... .+. .++.. ++..++.++.|+.|.-+|..+++........
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 33456677789999999999987765543221 111 11111 2268888889999999999988766544211
Q ss_pred CCC----CCc-ccccc-----------------CCCCCceeecCCCccccccCCc---eEEec---------CCC-CCe-
Q 000085 2080 PSS----GMG-TPGNS-----------------IGSSTPANASADKSRRRRIEGP---IHVLR---------GHH-REI- 2123 (2342)
Q Consensus 2080 ~~~----~V~-svs~S-----------------pDG~~Las~s~D~s~~~~i~~~---l~~L~---------GHs-~~V- 2123 (2342)
... .+. ...+. .++...+....++...|..... ...+. ++. ..|
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 110 000 00000 0111122222223333432110 00000 011 111
Q ss_pred EEEEEecCCCEEEEEeCCC------------------cEEEEECCCCeEEEEEec--CCcE--------EEE-E-ecCCc
Q 000085 2124 LCCCVSSDLGVVVSCSDSS------------------DLLLHSIRRGRLIRRLVG--VDAH--------AVS-L-SSEGV 2173 (2342)
Q Consensus 2124 t~VafSPDg~lLaSGS~DG------------------tIrIWDLrTGklIrsL~g--h~vs--------sLS-f-SpDG~ 2173 (2342)
...++.+.+..++.++.|+ .|.-.|..+|+.+-.+.. +... .+. . .-+|.
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 1344555677788887665 799999999998877642 1110 111 1 02332
Q ss_pred ---EEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccc
Q 000085 2174 ---IMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDL 2249 (2342)
Q Consensus 2174 ---IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFsp 2249 (2342)
+++....+|.+..++.. |+.+=..... ...++.+| ..++.++..... .+...
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~~~~~~---------~~~~~--------- 355 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGAFHIPL---------GLPPQ--------- 355 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEccccccc---------cCccc---------
Confidence 44555566777666664 4332221110 11233344 334333211110 00000
Q ss_pred ccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC-------CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2250 ASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG-------QDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2250 d~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs-------~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
. ........+|.+.-.|+.+|+.+.....+.. .+...-.....+..|++++.||.|+.+|..+.
T Consensus 356 ~-----~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 356 K-----KKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTG 426 (488)
T ss_pred c-----cCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCC
Confidence 0 0001112368899999999998887764310 11111111225567889999999999996655
No 355
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.86 E-value=0.39 Score=64.06 Aligned_cols=183 Identities=7% Similarity=-0.023 Sum_probs=103.7
Q ss_pred EEEcCCCCEE-EEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC----CceEEEeccCCcccccc
Q 000085 2002 VSITHDKEII-TGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD----TTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2002 VafSpDGklL-ASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D----GTVrVWDl~tg~~i~t~ 2076 (2342)
+-++|||+.+ ...-..+.+.+.|.++.+...++.--. .-..+++++||+++++.+.+ .++..-+.........+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 4467788754 344466788888988877665544322 33567899999999887632 22332222221110000
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCC------ceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEC
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG------PIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSI 2149 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~------~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDL 2149 (2342)
. .. ....+.++|+..... .+.+...+... .+..+-.-......++++|||++++.++ .+.+|.|.|+
T Consensus 277 n---i~--~iea~vkdGK~~~V~-gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 277 N---IA--RIEEAVKAGKFKTIG-GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred c---hH--HHHHhhhCCCEEEEC-CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 0 00 001223355443321 12222222222 1222222345678899999999886555 5899999999
Q ss_pred CCCeE------------EEEEe-cCCcEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2150 RRGRL------------IRRLV-GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2150 rTGkl------------IrsL~-gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
.+.+. +.... +-.....+|+.+|..+..-..+.++..|++..
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 87552 22222 23356778899988666666678888898753
No 356
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.84 E-value=3.1 Score=50.69 Aligned_cols=192 Identities=11% Similarity=0.119 Sum_probs=108.1
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccC-CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGH-CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GH-t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
++.++|.|+.+ ++++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++--+++++.+.++.........
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~ 102 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDR 102 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--E
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccch
Confidence 45699999866 6666767788887886 46777665432 345788899888888887767899999888552110000
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---Ce
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR---GR 2153 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT---Gk 2153 (2342)
. ...... +.....+...+-.++|++.++.++.+-......++.+.. +.
T Consensus 103 --------------------~-----~~~~~~----l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 103 --------------------A-----DVQKIS----LGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp --------------------E-----EEEEEE-------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS
T ss_pred --------------------h-----hceEEe----cccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcc
Confidence 0 000000 000123456688999999888887777776767776653 22
Q ss_pred EEEEEec----------CCcEEEEEecC-CcEEEEEeCCCeEEEEEeCCceeeeecCCC--------CCCeEEEEEccCC
Q 000085 2154 LIRRLVG----------VDAHAVSLSSE-GVIMTWNKLQHTLSSFTLNGVLVARAKLPL--------SGSIGCMEISLDG 2214 (2342)
Q Consensus 2154 lIrsL~g----------h~vssLSfSpD-G~IlVwdssdGsI~I~dlnG~~L~s~~~~H--------s~~ItsLafSPDG 2214 (2342)
.+..... .....+++.|. |++++.+..+..+..++..|+.+....+.. -.+.-.|+|.++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred ceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence 2222111 12466777764 677888888888888888887766544431 1368899999999
Q ss_pred CEEEEE
Q 000085 2215 HSALIG 2220 (2342)
Q Consensus 2215 k~LaSG 2220 (2342)
+..+++
T Consensus 234 ~LYIvs 239 (248)
T PF06977_consen 234 NLYIVS 239 (248)
T ss_dssp -EEEEE
T ss_pred CEEEEc
Confidence 877755
No 357
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=94.66 E-value=0.45 Score=57.48 Aligned_cols=151 Identities=11% Similarity=0.092 Sum_probs=86.6
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc-------cCCCCCCccccccCCCCCce--eecCCCcc
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT-------IEPSSGMGTPGNSIGSSTPA--NASADKSR 2105 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~-------~~~~~~V~svs~SpDG~~La--s~s~D~s~ 2105 (2342)
..|.--|.++.|..|...++++ .|-.|.+|++.-......+. ......+++..|+|....+. +.+.+.+.
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 3577778899999888888775 57789999886532211110 01112244555666544332 22222222
Q ss_pred ccccC--------Cc----------eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eEEEEEecCC----
Q 000085 2106 RRRIE--------GP----------IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG-RLIRRLVGVD---- 2162 (2342)
Q Consensus 2106 ~~~i~--------~~----------l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG-klIrsL~gh~---- 2162 (2342)
..+.. .. ..-+.+-...|..+.|+++|+++++-+. -+|+|||++.. .++.++.-|.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence 22211 00 1112223457889999999999987665 58999999854 5677775442
Q ss_pred -------------cEEEEEecCCcEEEEEeCCCeEEEE
Q 000085 2163 -------------AHAVSLSSEGVIMTWNKLQHTLSSF 2187 (2342)
Q Consensus 2163 -------------vssLSfSpDG~IlVwdssdGsI~I~ 2187 (2342)
-.-+.||-|..-++.+.......+|
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 1235666666666655544444443
No 358
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.60 E-value=0.73 Score=60.06 Aligned_cols=175 Identities=16% Similarity=0.054 Sum_probs=103.9
Q ss_pred EEEcCCCCEEEEEE---cC-CcEEEEecCCccccee--cccCCCCeEEEEecCCCCEEE-EEeCCCceEEE--eccCCcc
Q 000085 2002 VSITHDKEIITGGH---VD-GSIKLLTSDGAKTLET--ASGHCAPVTCLALSSDSNFLV-TGSQDTTILLW--RIHRAFT 2072 (2342)
Q Consensus 2002 VafSpDGklLASGS---~D-GsIrVWDl~tgkll~t--L~GHt~~VtcLAfSPDG~~La-SGS~DGTVrVW--Dl~tg~~ 2072 (2342)
-+|+|+++.++.-. .. ..+.++++.+++.... +.+|. ..-+|+|||++|+ +...||...|| |+.+...
T Consensus 198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~ 274 (425)
T COG0823 198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL 274 (425)
T ss_pred cccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc
Confidence 56888888544332 22 4589999998865544 34444 3468999998766 45667766555 5555432
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCc--ccc--cc-CCceEEecCCCCCeEEEEEecCCCEEEEEeCC-Cc--E
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKS--RRR--RI-EGPIHVLRGHHREILCCCVSSDLGVVVSCSDS-SD--L 2144 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s--~~~--~i-~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D-Gt--I 2144 (2342)
.. .....+.-....++|||+.++..+..+- .++ +. ......+.-+.+.-.+-.|+|||++++..+.. |. |
T Consensus 275 -~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i 352 (425)
T COG0823 275 -PR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDI 352 (425)
T ss_pred -ee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceee
Confidence 22 2222333337789999999866654321 111 11 11222333232333377799999999877743 44 7
Q ss_pred EEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCC
Q 000085 2145 LLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQ 2181 (2342)
Q Consensus 2145 rIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssd 2181 (2342)
.+.|+.++..++.+.... ...-++.++|..+++....
T Consensus 353 ~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 353 DKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 777777766555554322 3455678888877776443
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.11 Score=67.88 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=71.3
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeE-EEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVT-CLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~Vt-cLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
..+.|+|.-.+||.+..+|.|.+..+. -+.+.++.-|...|+ +++|.|||+.|+.|=.||+|++-|+.++..++....
T Consensus 24 ~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~ 102 (665)
T KOG4640|consen 24 KRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLF 102 (665)
T ss_pred EEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecccc
Confidence 348899999999999999999999887 566777777777777 999999999999999999999999999876655322
Q ss_pred CCCCCCcccccc
Q 000085 2079 EPSSGMGTPGNS 2090 (2342)
Q Consensus 2079 ~~~~~V~svs~S 2090 (2342)
.....+....|+
T Consensus 103 s~e~~is~~~w~ 114 (665)
T KOG4640|consen 103 SVETDISKGIWD 114 (665)
T ss_pred ccccchheeecc
Confidence 233334444443
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=6.5 Score=50.76 Aligned_cols=179 Identities=12% Similarity=0.161 Sum_probs=116.0
Q ss_pred EEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC---CCceEEEeccCCcccccc
Q 000085 2001 VVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ---DTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2001 ~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~---DGTVrVWDl~tg~~i~t~ 2076 (2342)
.+++++++. ..+....++.|.+.|..+.+......--. .-..++++++++.++.+.. ++++.+-|..+.....+
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~- 155 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT- 155 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-
Confidence 477888888 55666667999999987776665544222 4568899999988776655 56676666665422111
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIRRGRLI 2155 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTGklI 2155 (2342)
...|- .+ ..++++|+|..++.+. .+++|.+.|..+....
T Consensus 156 --------------------------------------~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 156 --------------------------------------IPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred --------------------------------------EecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 11111 22 7889999999665554 7899999997766665
Q ss_pred E------EEecCCcEEEEEecCCcEE-EEEeCC--CeEEEEEeCCceeeeecCCCCC-CeEEEEEccCCCEEEEEe
Q 000085 2156 R------RLVGVDAHAVSLSSEGVIM-TWNKLQ--HTLSSFTLNGVLVARAKLPLSG-SIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2156 r------sL~gh~vssLSfSpDG~Il-Vwdssd--GsI~I~dlnG~~L~s~~~~Hs~-~ItsLafSPDGk~LaSGS 2221 (2342)
+ .-.+.....+.++++|..+ +....+ +.+...+.....+......-.. ....+.++|+|.++.+..
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVAN 271 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEe
Confidence 4 1112235678999999844 444433 4777777665444433222112 566789999999988763
No 361
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.35 E-value=5 Score=52.25 Aligned_cols=92 Identities=13% Similarity=0.207 Sum_probs=63.9
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEE----ecCC-----------------c
Q 000085 2115 VLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSL----SSEG-----------------V 2173 (2342)
Q Consensus 2115 ~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSf----SpDG-----------------~ 2173 (2342)
.+......+.+++.+|++++.++...=|.|.++|+.++..++.+++...-.+.| .... -
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 444555678999999999999888888999999999999999888754322222 1111 2
Q ss_pred EEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCE
Q 000085 2174 IMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2174 IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~ 2216 (2342)
++++..+.|.+.+|.+. |...|.++...+++++
T Consensus 382 LvIyaprRg~lEvW~~~----------~g~Rv~a~~v~k~~rL 414 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMR----------QGPRVAAFNVGKGCRL 414 (415)
T ss_pred EEEEeccCCeEEEEecC----------CCCEEEEEEeCCCcEE
Confidence 45677788888888874 2345555555555443
No 362
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.19 E-value=11 Score=52.32 Aligned_cols=311 Identities=14% Similarity=0.088 Sum_probs=157.0
Q ss_pred eEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc-cCCCCeEEEEe
Q 000085 1968 FLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS-GHCAPVTCLAL 2046 (2342)
Q Consensus 1968 tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~-GHt~~VtcLAf 2046 (2342)
.+|+++... ....|..|...+. .+.+.+...++.++.++.+...++..+....+.+ .-...|.|+.+
T Consensus 471 ~iRl~ss~~--~~~~W~~p~~~ti----------~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDi 538 (1096)
T KOG1897|consen 471 SIRLVSSAG--LRSEWRPPGKITI----------GVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDI 538 (1096)
T ss_pred cEEEEcchh--hhhcccCCCceEE----------EEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEec
Confidence 577777542 4557766554332 2233333344444446666666666554222211 12467999999
Q ss_pred cCCC------CEEEEEeCCCceEEEeccCCcccccc----ccCCCCCCccccccCCCCCceeecCCCcccc---ccC-Cc
Q 000085 2047 SSDS------NFLVTGSQDTTILLWRIHRAFTSRTG----TIEPSSGMGTPGNSIGSSTPANASADKSRRR---RIE-GP 2112 (2342)
Q Consensus 2047 SPDG------~~LaSGS~DGTVrVWDl~tg~~i~t~----~~~~~~~V~svs~SpDG~~Las~s~D~s~~~---~i~-~~ 2112 (2342)
+|-| ++++.|.++..+.+--.......... ...-+..+....+--|+.++.++..++.... +.. ..
T Consensus 539 sp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~ 618 (1096)
T KOG1897|consen 539 SPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQ 618 (1096)
T ss_pred ccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccce
Confidence 9742 37888998887766544332211111 1122333444444445667777766665331 111 11
Q ss_pred ---eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcE-EEEEecCC-cEEEEEeCCCeEEEE
Q 000085 2113 ---IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAH-AVSLSSEG-VIMTWNKLQHTLSSF 2187 (2342)
Q Consensus 2113 ---l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vs-sLSfSpDG-~IlVwdssdGsI~I~ 2187 (2342)
.+...--..++.--.|+..++.-+-+..|.-..+|.-+..-+...+...++. .+.++.++ .-.+.....+.+.+.
T Consensus 619 lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~ 698 (1096)
T KOG1897|consen 619 LSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIG 698 (1096)
T ss_pred EccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEE
Confidence 1111112345555566666555555666666666664332222223222222 22233222 222222344556666
Q ss_pred EeCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe
Q 000085 2188 TLNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2188 dlnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
.++. +.+.....+-......+++.+....+.+.+....... . + +.. ...-..
T Consensus 699 tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~----------~---~---~~e-----------e~~~s~ 751 (1096)
T KOG1897|consen 699 TIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSA----------E---Y---YGE-----------EYEVSF 751 (1096)
T ss_pred EecchhhcceeeecCCCChhheEecccceEEEEEecccccch----------h---h---cCC-----------cceEEE
Confidence 6542 1111111334566778888875555555542222000 0 0 000 011346
Q ss_pred EEEEECCCCeEEEEEecCCCCC---eEEEEEecC-CCEEEEEeC----------CCcEEEEeCCC
Q 000085 2267 ICFLDLHTLKVFHVLKLGEGQD---ITALALNKD-NTNLLVSTA----------DKQLIVFTDPA 2317 (2342)
Q Consensus 2267 IrIWDL~Tgk~L~tL~lgHs~~---ItsLafSPD-G~~LaSGSs----------DGsIrVWDi~s 2317 (2342)
++++|-+|.+.++..+...... |.++.|..| +.++++|+. .|.|.||....
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence 8899999888777655433333 455558888 788888863 58888888665
No 363
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.01 E-value=1.4 Score=57.77 Aligned_cols=143 Identities=15% Similarity=0.105 Sum_probs=80.3
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEE-eCCcee
Q 000085 2116 LRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFT-LNGVLV 2194 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~d-lnG~~L 2194 (2342)
+.........+.++|+|+.++. +.||.-.|+.....+.... .....++|.+.|++.+.+. ++.|.++. ++....
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~---G~g~~~vw~~~n~yAv~~~-~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF---GSGLSFVWSSRNRYAVLES-SSTIKIYKNFKNEVV 102 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE---EE-SEEEE-TSSEEEEE-T-TS-EEEEETTEE-TT
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc---CceeEEEEecCccEEEEEC-CCeEEEEEcCccccc
Confidence 3334455788999999998887 5567777777544433332 2234677888888777765 66777753 222111
Q ss_pred eeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC
Q 000085 2195 ARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT 2274 (2342)
Q Consensus 2195 ~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T 2274 (2342)
.... ....+..+-. |..|...+ ++.|.+||+.+
T Consensus 103 k~i~--~~~~~~~If~---G~LL~~~~------------------------------------------~~~i~~yDw~~ 135 (443)
T PF04053_consen 103 KSIK--LPFSVEKIFG---GNLLGVKS------------------------------------------SDFICFYDWET 135 (443)
T ss_dssp -------SS-EEEEE----SSSEEEEE------------------------------------------TTEEEEE-TTT
T ss_pred eEEc--CCcccceEEc---CcEEEEEC------------------------------------------CCCEEEEEhhH
Confidence 1111 1122333322 66665443 45799999999
Q ss_pred CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2275 LKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2275 gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
++.+..+. . .+|..|.|+++|.+++..+.| .+.|++
T Consensus 136 ~~~i~~i~--v-~~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 136 GKLIRRID--V-SAVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp --EEEEES--S--E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred cceeeEEe--c-CCCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 99999988 2 248999999999999888755 677776
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.68 E-value=23 Score=46.43 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=40.0
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CcEEEEEecCCcE
Q 000085 2121 REILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV---DAHAVSLSSEGVI 2174 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh---~vssLSfSpDG~I 2174 (2342)
+++..+++||++++++.-..+|.+.+.+..-.+.+..+... ....+.|.-+..+
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 57999999999999999999999999887655565555433 2455666655443
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.51 E-value=7.6 Score=48.63 Aligned_cols=102 Identities=11% Similarity=0.091 Sum_probs=58.9
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-EEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeC--Ccee
Q 000085 2119 HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR-LIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLN--GVLV 2194 (2342)
Q Consensus 2119 Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk-lIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dln--G~~L 2194 (2342)
..++|++++-- ++. ++.+. ++.|.+|++...+ ....-.. .....++....+.+++.+.....+.++..+ +..+
T Consensus 87 ~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l 163 (321)
T PF03178_consen 87 VKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKL 163 (321)
T ss_dssp ESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-E
T ss_pred ecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEE
Confidence 46789988766 344 44333 4799999998887 5443322 234555555556666666655666666443 4322
Q ss_pred eeec-CCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2195 ARAK-LPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2195 ~s~~-~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
.... -.....++++.+-+|++.++++..+
T Consensus 164 ~~va~d~~~~~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 164 ILVARDYQPRWVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp EEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred EEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence 2211 1245678888888777777766543
No 366
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.41 E-value=4.5 Score=50.65 Aligned_cols=187 Identities=14% Similarity=0.110 Sum_probs=101.7
Q ss_pred cceeEEEEEcCC----CCEEEEEEc----------CCcEEEEecCCc----ccceec--ccCCCCeEEEEecCCCCEEEE
Q 000085 1996 IRSSAVVSITHD----KEIITGGHV----------DGSIKLLTSDGA----KTLETA--SGHCAPVTCLALSSDSNFLVT 2055 (2342)
Q Consensus 1996 I~Svt~VafSpD----GklLASGS~----------DGsIrVWDl~tg----kll~tL--~GHt~~VtcLAfSPDG~~LaS 2055 (2342)
+.++..+.+..+ ..+|+.|+. .|.|.++++... ..+..+ ....++|++++-- ++. |+.
T Consensus 26 ~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~ 103 (321)
T PF03178_consen 26 VTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVV 103 (321)
T ss_dssp EEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEE
T ss_pred EEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEE
Confidence 344455556554 357777763 288999999874 122222 2357889999876 444 444
Q ss_pred EeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEE
Q 000085 2056 GSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVV 2135 (2342)
Q Consensus 2056 GS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL 2135 (2342)
+. .+.|.+|++....... ....+. ....++++... ++++
T Consensus 104 ~~-g~~l~v~~l~~~~~l~-------------------------------------~~~~~~-~~~~i~sl~~~--~~~I 142 (321)
T PF03178_consen 104 AV-GNKLYVYDLDNSKTLL-------------------------------------KKAFYD-SPFYITSLSVF--KNYI 142 (321)
T ss_dssp EE-TTEEEEEEEETTSSEE-------------------------------------EEEEE--BSSSEEEEEEE--TTEE
T ss_pred ee-cCEEEEEEccCcccch-------------------------------------hhheec-ceEEEEEEecc--ccEE
Confidence 43 4899999998743000 011111 12255555554 6689
Q ss_pred EEEeCCCcEEEEECCC-CeEEEEEec----CCcEEEEEecCCcEEEEEeCCCeEEEEEeCC--------c-ee-eeecCC
Q 000085 2136 VSCSDSSDLLLHSIRR-GRLIRRLVG----VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG--------V-LV-ARAKLP 2200 (2342)
Q Consensus 2136 aSGS~DGtIrIWDLrT-GklIrsL~g----h~vssLSfSpDG~IlVwdssdGsI~I~dlnG--------~-~L-~s~~~~ 2200 (2342)
+.|.....+.++..+. +..+..+.. ..+..+.+-.|+..++.+...|.+.++..+. . .+ ....+.
T Consensus 143 ~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~ 222 (321)
T PF03178_consen 143 LVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH 222 (321)
T ss_dssp EEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE
T ss_pred EEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE
Confidence 9999888888775443 332332221 2256666665656777777889998888752 1 12 222222
Q ss_pred CCCCeEEE---EEcc--CCC------EEEEEeCCCC
Q 000085 2201 LSGSIGCM---EISL--DGH------SALIGVNSSS 2225 (2342)
Q Consensus 2201 Hs~~ItsL---afSP--DGk------~LaSGS~DGs 2225 (2342)
....|+++ .+.| .+. .++.++.+|+
T Consensus 223 lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~ 258 (321)
T PF03178_consen 223 LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGS 258 (321)
T ss_dssp -SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-
T ss_pred CCCccceEEEEEeeecCCCCcccccceEEEEecCCE
Confidence 45667777 4444 222 3666666666
No 367
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.36 E-value=0.043 Score=71.12 Aligned_cols=179 Identities=16% Similarity=0.203 Sum_probs=104.9
Q ss_pred EEEEEcCCC--CEEEEEEcCCcEEEEecCCcc--cceecccCCCCeEEEEecC-CCCEEEEEe----CCCceEEEeccCC
Q 000085 2000 AVVSITHDK--EIITGGHVDGSIKLLTSDGAK--TLETASGHCAPVTCLALSS-DSNFLVTGS----QDTTILLWRIHRA 2070 (2342)
Q Consensus 2000 t~VafSpDG--klLASGS~DGsIrVWDl~tgk--ll~tL~GHt~~VtcLAfSP-DG~~LaSGS----~DGTVrVWDl~tg 2070 (2342)
.|++..-+. .+++.|..+|.|.+-.+.... ......+|....+|++|++ |.+.||.|- .|..+.|||+.+.
T Consensus 60 kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ 139 (783)
T KOG1008|consen 60 KCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSL 139 (783)
T ss_pred eeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccc
Confidence 345544433 489999999999998875432 2345677889999999998 456777662 4678999999885
Q ss_pred ccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2071 FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2071 ~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
-.... ....|+ + +......++||-.+.+++.+|.....+.++|++
T Consensus 140 ltvPk---------e~~~fs--------~------------------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR 184 (783)
T KOG1008|consen 140 LTVPK---------ESPLFS--------S------------------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR 184 (783)
T ss_pred cCCCc---------cccccc--------c------------------ccccCccccccccCcchhhcccccchhhhhhhh
Confidence 22100 000000 0 122334478888889999999999999999998
Q ss_pred CC-eEEEEEecCCcEEEEEec-CCcEEEEEeCCCeEEEEEeC---Cceeeeec---CCCCCCeEEEEEccCC
Q 000085 2151 RG-RLIRRLVGVDAHAVSLSS-EGVIMTWNKLQHTLSSFTLN---GVLVARAK---LPLSGSIGCMEISLDG 2214 (2342)
Q Consensus 2151 TG-klIrsL~gh~vssLSfSp-DG~IlVwdssdGsI~I~dln---G~~L~s~~---~~Hs~~ItsLafSPDG 2214 (2342)
.. .....+...-+..++++| .+.+ +++..+|.+.+|+.. ..++.... .+....+..++|+|..
T Consensus 185 qs~~~~~svnTk~vqG~tVdp~~~nY-~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 185 QSLDSVSSVNTKYVQGITVDPFSPNY-FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred hhhhhhhhhhhhhcccceecCCCCCc-eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 32 112222211233445555 3332 233335666666621 11111111 0122358899999864
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.61 E-value=7.6 Score=48.81 Aligned_cols=213 Identities=12% Similarity=0.016 Sum_probs=121.1
Q ss_pred EcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc----cc
Q 000085 2004 ITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG----TI 2078 (2342)
Q Consensus 2004 fSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~----~~ 2078 (2342)
|.++.. ++.+.-..+.|.-|+..+++.. .+. +.+.+.++..-.++..|+++.. -+.+++..++...... ..
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~ 107 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDG 107 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence 445555 4555556778888888765432 222 3334556555555566666543 3555666544331111 11
Q ss_pred CCCCCCccccccCCCCCceeecC-----CC-------ccccc-cCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CCcE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASA-----DK-------SRRRR-IEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SSDL 2144 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~-----D~-------s~~~~-i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DGtI 2144 (2342)
............|+|...+.... .. ..+.+ ....+..+.+|-..-+.++||||++.++.+.. .+.|
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence 12234445566777776655544 10 11112 12234444445555678999999987776654 4778
Q ss_pred EEEECCC--CeE----EEEEec---CCcEEEEEecCCcEEEEEeCCC-eEEEEEeCCceeeeecCCCCCCeEEEEEc-cC
Q 000085 2145 LLHSIRR--GRL----IRRLVG---VDAHAVSLSSEGVIMTWNKLQH-TLSSFTLNGVLVARAKLPLSGSIGCMEIS-LD 2213 (2342)
Q Consensus 2145 rIWDLrT--Gkl----IrsL~g---h~vssLSfSpDG~IlVwdssdG-sI~I~dlnG~~L~s~~~~Hs~~ItsLafS-PD 2213 (2342)
.-|++.. +.. ...... ...--++...+|.+.++....| .|..|+.+|+.+.....+. ..+++++|- ++
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~-~~~t~~~FgG~~ 266 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPV-KRPTNPAFGGPD 266 (307)
T ss_pred EEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCC-CCCccceEeCCC
Confidence 8887652 211 111111 1134577788888776444443 8999999999988887765 667777775 45
Q ss_pred CCEEEEEe
Q 000085 2214 GHSALIGV 2221 (2342)
Q Consensus 2214 Gk~LaSGS 2221 (2342)
.+.|++.+
T Consensus 267 ~~~L~iTs 274 (307)
T COG3386 267 LNTLYITS 274 (307)
T ss_pred cCEEEEEe
Confidence 56666554
No 369
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=92.44 E-value=12 Score=48.61 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCccc-------------------------------------------ceecc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKT-------------------------------------------LETAS 2035 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkl-------------------------------------------l~tL~ 2035 (2342)
++.+.|+++..-|++|...|.|.||.+...+. ...+.
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 56688999988899999999999986432110 01123
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEE
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~ 2115 (2342)
...++|++++.| |=.+++.|..+|++.|.|++....+..... . . ...
T Consensus 84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i--------------------------~-----~-~~~ 130 (395)
T PF08596_consen 84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENI--------------------------R-----E-SFL 130 (395)
T ss_dssp --S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEG--------------------------G-----G---T
T ss_pred ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccc--------------------------c-----c-ccc
Confidence 346899999998 666999999999999999977543322100 0 0 000
Q ss_pred ecCCCCCeEEEEEec-----CC---CEEEEEeCCCcEEEEECC
Q 000085 2116 LRGHHREILCCCVSS-----DL---GVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSP-----Dg---~lLaSGS~DGtIrIWDLr 2150 (2342)
-......|+++.|+. |+ -.++.|...|.+.+|.+-
T Consensus 131 ~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 131 SKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp -SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred ccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 011234566777752 22 367788888999999764
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.34 E-value=1.5 Score=60.53 Aligned_cols=131 Identities=15% Similarity=0.226 Sum_probs=85.1
Q ss_pred CCCcEEEEECCCCeEEEEEecCC-cEEEEEecCC-------cEEEEEeCCCeEEEEEeC--Cceeee---ecCCCCCCeE
Q 000085 2140 DSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEG-------VIMTWNKLQHTLSSFTLN--GVLVAR---AKLPLSGSIG 2206 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG-------~IlVwdssdGsI~I~dln--G~~L~s---~~~~Hs~~It 2206 (2342)
....|+-.|+.+|+.+..+..+. +....+.|+. .-.+.+..+..+..|+.. |..+.. .........+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 45778899999999999888765 3355565543 233555666667777654 322211 1112455678
Q ss_pred EEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC
Q 000085 2207 CMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG 2286 (2342)
Q Consensus 2207 sLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs 2286 (2342)
|++-+.+|.. |+|+ .+|.|++||-- |+.-.+...+-+
T Consensus 582 ~~aTt~~G~i-avgs-----------------------------------------~~G~IRLyd~~-g~~AKT~lp~lG 618 (794)
T PF08553_consen 582 CFATTEDGYI-AVGS-----------------------------------------NKGDIRLYDRL-GKRAKTALPGLG 618 (794)
T ss_pred EEEecCCceE-EEEe-----------------------------------------CCCcEEeeccc-chhhhhcCCCCC
Confidence 8887777754 4454 26779999953 333334333778
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2287 QDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2287 ~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
.+|.+|+.+.||++|++.+ +..|.+++
T Consensus 619 ~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 619 DPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred CCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 9999999999999887655 55677766
No 371
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.96 E-value=4.1 Score=51.86 Aligned_cols=218 Identities=13% Similarity=0.021 Sum_probs=104.3
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccce-eccc-------C---------CCCeEEEEecCCCCEEEEEeCC-Cc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE-TASG-------H---------CAPVTCLALSSDSNFLVTGSQD-TT 2061 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~-tL~G-------H---------t~~VtcLAfSPDG~~LaSGS~D-GT 2061 (2342)
....|||+|+.++... ++.|.+++..++...+ +..| - -+.-..+-|||||++|+....| ..
T Consensus 46 ~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~ 124 (353)
T PF00930_consen 46 QDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDERE 124 (353)
T ss_dssp SEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TT
T ss_pred ccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcC
Confidence 3488999999999885 7899999987764432 1122 0 1123457899999999876543 33
Q ss_pred eEEEec-----------------------------------cCCcccccc-c---cCCCCCCccccccCCCCCceeecCC
Q 000085 2062 ILLWRI-----------------------------------HRAFTSRTG-T---IEPSSGMGTPGNSIGSSTPANASAD 2102 (2342)
Q Consensus 2062 VrVWDl-----------------------------------~tg~~i~t~-~---~~~~~~V~svs~SpDG~~Las~s~D 2102 (2342)
|..+.+ .++...... . ......+..+.|.+++..++....+
T Consensus 125 v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n 204 (353)
T PF00930_consen 125 VPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN 204 (353)
T ss_dssp S-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred CceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcc
Confidence 433332 211110000 0 0111122334444555422222111
Q ss_pred Ccc------cccc--CCceEEec-CCCC---CeEEEEEe-cCCC-EEEEEeCCCc--EEEEECCCCeEEEEEecCC--c-
Q 000085 2103 KSR------RRRI--EGPIHVLR-GHHR---EILCCCVS-SDLG-VVVSCSDSSD--LLLHSIRRGRLIRRLVGVD--A- 2163 (2342)
Q Consensus 2103 ~s~------~~~i--~~~l~~L~-GHs~---~Vt~VafS-PDg~-lLaSGS~DGt--IrIWDLrTGklIrsL~gh~--v- 2163 (2342)
... .++. +.....+. .... ......|. +++. ++.....||. |.+.+...+. .+.+.... +
T Consensus 205 R~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~ 283 (353)
T PF00930_consen 205 RDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVT 283 (353)
T ss_dssp TTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EE
T ss_pred cCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeec
Confidence 110 0111 11111111 1111 22245554 5544 4445557775 4445555554 33443222 3
Q ss_pred EEEEEecCCcEEEEEeCC---CeEEEE--EeC-CceeeeecCCCCCCe-EEEEEccCCCEEEEEe
Q 000085 2164 HAVSLSSEGVIMTWNKLQ---HTLSSF--TLN-GVLVARAKLPLSGSI-GCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2164 ssLSfSpDG~IlVwdssd---GsI~I~--dln-G~~L~s~~~~Hs~~I-tsLafSPDGk~LaSGS 2221 (2342)
..+.+++++..+.+.... ..-++| +++ +..+.... ..... ..+.|||+|++++...
T Consensus 284 ~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT--~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 284 SILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLT--CEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESS--TTSSTTEEEEE-TTSSEEEEEE
T ss_pred ccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEecc--CCCCCceEEEECCCCCEEEEEE
Confidence 467888888776665433 233444 445 44554433 22222 6999999999998654
No 372
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.94 E-value=74 Score=44.94 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=40.9
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
..+|++|++.+.+.++.-. .|..++..+...-.|..+++|.--+++.+-..
T Consensus 847 n~~vrLye~t~~~eLr~e~-~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y 897 (1096)
T KOG1897|consen 847 NQSVRLYEWTTERELRIEC-NISNPIIALDLQVKGDEIAVGDLMRSITLLQY 897 (1096)
T ss_pred CcEEEEEEccccceehhhh-cccCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence 3569999998886666555 67788999999999999999988887776553
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=0.53 Score=61.74 Aligned_cols=78 Identities=10% Similarity=0.238 Sum_probs=63.5
Q ss_pred CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC
Q 000085 2039 APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG 2118 (2342)
Q Consensus 2039 ~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G 2118 (2342)
-.|.-+.|+|.-..+|++..+|.|.+..++-. .+.++.-
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q-----------------------------------------Rlwtip~ 59 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQ-----------------------------------------RLWTIPI 59 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccc-----------------------------------------eeEeccC
Confidence 35778899999999999999999988887632 1122333
Q ss_pred CCCCeE-EEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2119 HHREIL-CCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2119 Hs~~Vt-~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
|...++ +++|.|||+.++.|-.||+|+++|+.+|..+..
T Consensus 60 p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 60 PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 555566 999999999999999999999999999987766
No 374
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.45 E-value=21 Score=45.38 Aligned_cols=237 Identities=13% Similarity=0.074 Sum_probs=120.3
Q ss_pred EEEcCCCCEEEEEE----------cCCcEEEEecCCcccceec--cc-CCC----CeEEEEecCCCCEEEEE--eCCCce
Q 000085 2002 VSITHDKEIITGGH----------VDGSIKLLTSDGAKTLETA--SG-HCA----PVTCLALSSDSNFLVTG--SQDTTI 2062 (2342)
Q Consensus 2002 VafSpDGklLASGS----------~DGsIrVWDl~tgkll~tL--~G-Ht~----~VtcLAfSPDG~~LaSG--S~DGTV 2062 (2342)
+.++|||+.+.+.+ .+-.|.+||..+-.....+ .. |.. .....+++.||++++.. +--..|
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV 120 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence 66899999776532 4556999999887554422 21 111 22345788899887764 445678
Q ss_pred EEEeccCCccccccccCCCC------CCccccccCCCCCceeecCC-CccccccCCceEEecCCCCCeE-EEEEecCCCE
Q 000085 2063 LLWRIHRAFTSRTGTIEPSS------GMGTPGNSIGSSTPANASAD-KSRRRRIEGPIHVLRGHHREIL-CCCVSSDLGV 2134 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~~~~~~~------~V~svs~SpDG~~Las~s~D-~s~~~~i~~~l~~L~GHs~~Vt-~VafSPDg~l 2134 (2342)
.|-|+...+...+.....+. .-.....+-||..+.+...+ +... .+....+....+++. .-++...+..
T Consensus 121 tVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~---~~~t~~F~~~~dp~f~~~~~~~~~~~ 197 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA---QKSTKVFDPDDDPLFEHPAYSRDGGR 197 (342)
T ss_dssp EEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE---EEEEEESSTTTS-B-S--EEETTTTE
T ss_pred EEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe---EeeccccCCCCcccccccceECCCCe
Confidence 88888886655443111111 11122223344433332221 1111 001112222223222 3344555666
Q ss_pred EEEEeCCCcEEEEECCCCeE--EEEEec------------CCcEEEEEecCC-cEEEEE-------eCCC--eEEEEEeC
Q 000085 2135 VVSCSDSSDLLLHSIRRGRL--IRRLVG------------VDAHAVSLSSEG-VIMTWN-------KLQH--TLSSFTLN 2190 (2342)
Q Consensus 2135 LaSGS~DGtIrIWDLrTGkl--IrsL~g------------h~vssLSfSpDG-~IlVwd-------ssdG--sI~I~dln 2190 (2342)
++--+.+|.|+--|+..... ...+.. .+-..+++++.. ++++.- -.++ .|.+|++.
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 66688889998888865542 222321 112457777544 443321 1122 34455554
Q ss_pred -CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEE
Q 000085 2191 -GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICF 2269 (2342)
Q Consensus 2191 -G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrI 2269 (2342)
++.+.+... ..++.+|.++.|.+=++.+-. . .++.+.|
T Consensus 278 t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~-~--------------------------------------~~~~l~v 316 (342)
T PF06433_consen 278 THKRVARIPL--EHPIDSIAVSQDDKPLLYALS-A--------------------------------------GDGTLDV 316 (342)
T ss_dssp TTEEEEEEEE--EEEESEEEEESSSS-EEEEEE-T--------------------------------------TTTEEEE
T ss_pred CCeEEEEEeC--CCccceEEEccCCCcEEEEEc-C--------------------------------------CCCeEEE
Confidence 444554433 346778999888774443310 0 2678999
Q ss_pred EECCCCeEEEEEe
Q 000085 2270 LDLHTLKVFHVLK 2282 (2342)
Q Consensus 2270 WDL~Tgk~L~tL~ 2282 (2342)
||..+|+.+.++.
T Consensus 317 ~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 317 YDAATGKLVRSIE 329 (342)
T ss_dssp EETTT--EEEEE-
T ss_pred EeCcCCcEEeehh
Confidence 9999999999887
No 375
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.40 E-value=69 Score=43.47 Aligned_cols=54 Identities=15% Similarity=-0.021 Sum_probs=37.4
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
-|.|.-+|+.+++.....+.... ...+. +.-.+..++.++.||.++.+|..+.+
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p-~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe 493 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFP-LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGE 493 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCC-CCCcc-eEECCcEEEEECCCCeEEEEECCCCC
Confidence 57899999999999887763221 11122 22245567788889999999977663
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=91.17 E-value=15 Score=50.24 Aligned_cols=75 Identities=11% Similarity=0.030 Sum_probs=40.4
Q ss_pred CcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEe---CCceeee-----ecCCCCCCeEEEEEccC
Q 000085 2142 SDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTL---NGVLVAR-----AKLPLSGSIGCMEISLD 2213 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dl---nG~~L~s-----~~~~Hs~~ItsLafSPD 2213 (2342)
+.+.+.++..+.....+ ...+..+.||+||..+++-. ++.+++-.+ .+....- ........+.++.|..+
T Consensus 430 gql~~~~vd~ge~~~~~-~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~ 507 (591)
T PRK13616 430 GQLARTPVDASAVASRV-PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTG 507 (591)
T ss_pred ceEEEEeccCchhhhcc-CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecC
Confidence 34444455544443311 23478888999998777654 466655222 2222111 11112334688999999
Q ss_pred CCEEE
Q 000085 2214 GHSAL 2218 (2342)
Q Consensus 2214 Gk~La 2218 (2342)
+.+++
T Consensus 508 ~~L~V 512 (591)
T PRK13616 508 DSLVV 512 (591)
T ss_pred CEEEE
Confidence 88653
No 377
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.11 E-value=44 Score=40.74 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=57.0
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
|+.++-+...+.+.+.+..+|+ ..|.|... ..+.+ .-...+++.+|.+|+.|++.+..|..+..++...+.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs--~~w~f~~~-----~~vk~--~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGS--QIWNFVIL-----ETVKV--RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred CCEEEEEEccCcEEEEEecchh--heeeeeeh-----hhhcc--ceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 3344445444556666655543 24544221 11222 134578899999999999999999998887766553
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEec
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl 2067 (2342)
..+.-.+-+..|-...|+.+...|.|.--..
T Consensus 134 gG~~f~sP~i~~g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 134 GGGTFVSPVIAPGDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred CCceeccceecCCCceEEEEeccceEEEEcc
Confidence 3333333344553334444444454443333
No 378
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.97 E-value=3.7 Score=55.88 Aligned_cols=97 Identities=19% Similarity=0.164 Sum_probs=58.8
Q ss_pred CCeEEEEEecCCCEEEEEe------CCC--cEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeC------------
Q 000085 2121 REILCCCVSSDLGVVVSCS------DSS--DLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKL------------ 2180 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS------~DG--tIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdss------------ 2180 (2342)
..+...+++|+|+.++..- .|+ .|.+++. .+.......+.....-+|++||..+.+-..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 4678889999999876554 244 4555554 333333334444667789999764433321
Q ss_pred CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2181 QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2181 dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
++.+.+..+++..... ...+.|..+.|||||..++...
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence 2344444444432222 2356899999999999988654
No 379
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=90.96 E-value=5.3 Score=42.91 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=49.3
Q ss_pred eeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEecc
Q 000085 1998 SSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 1998 Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
+.+.+.|..||+ -|+.|+.|..||||+-+ ..+..+.. ++.|++++-... ..++.+-.+|||-+|+-.
T Consensus 4 al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 4 ALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS 71 (111)
T ss_pred EEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence 333455666665 88999999999999854 45555543 456888887755 679999999999999753
No 380
>PRK10115 protease 2; Provisional
Probab=89.59 E-value=1.1e+02 Score=42.92 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=39.2
Q ss_pred eeEEEEEcCCCCEEEEEEc-----CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC
Q 000085 1998 SSAVVSITHDKEIITGGHV-----DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ 2058 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~-----DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~ 2058 (2342)
.+..+.+||||++|+.+.. ...|++.|+.+|..+.....+.. ..++|++|++.|+-...
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEe
Confidence 3445788999998886643 23588999988864432222222 45899999887766544
No 381
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.47 E-value=1.1 Score=62.02 Aligned_cols=69 Identities=26% Similarity=0.383 Sum_probs=52.1
Q ss_pred CCEEEEEEcCCcEEEEecCCc-ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 2008 KEIITGGHVDGSIKLLTSDGA-KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tg-kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
+..++.|+..|.+-..|..+. .....-..-.++|+|++|+.+|..++.|-.+|.|.+||+.++...+.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 446888888888888887653 111222224579999999999999999999999999999986554433
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.38 E-value=1.2 Score=61.64 Aligned_cols=102 Identities=18% Similarity=0.279 Sum_probs=69.3
Q ss_pred ecCCcEEEEEeCCCeEEEEEeCCceee-eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccc
Q 000085 2169 SSEGVIMTWNKLQHTLSSFTLNGVLVA-RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDF 2247 (2342)
Q Consensus 2169 SpDG~IlVwdssdGsI~I~dlnG~~L~-s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaF 2247 (2342)
.-.+..++.++..|.+..++.+|..-. .....-.++|++++|+.||..++.|-
T Consensus 96 a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~-------------------------- 149 (1206)
T KOG2079|consen 96 AIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGL-------------------------- 149 (1206)
T ss_pred eeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceecccc--------------------------
Confidence 334444555555666666665553110 00111467999999999999998763
Q ss_pred ccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEE---EecCCCEEEEEeCCCcEEEEe
Q 000085 2248 DLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALA---LNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2248 spd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLa---fSPDG~~LaSGSsDGsIrVWD 2314 (2342)
.+|.|.+||+.+++.++.+. .|+.+.+++- +..++..++++...|+ +|.
T Consensus 150 ---------------~~G~V~v~D~~~~k~l~~i~-e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 150 ---------------GDGHVTVWDMHRAKILKVIT-EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ---------------CCCcEEEEEccCCcceeeee-ecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 36889999999999998888 6776666554 4456677888888887 555
No 383
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=89.27 E-value=47 Score=40.74 Aligned_cols=107 Identities=15% Similarity=0.232 Sum_probs=69.4
Q ss_pred EEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCeEEEEEecC---CcEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2114 HVLRGHHREILCCCVSSDLG-VVVSCSDSSDLLLHSIRRGRLIRRLVGV---DAHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~-lLaSGS~DGtIrIWDLrTGklIrsL~gh---~vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
..+.+-...+..++|+|+.+ ++++....+.|...+. +|+.++++... ....+++..+|.+++.+-+.+.+.++.+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34566667799999999855 5666777888888886 68898887653 3578888889999888888899988888
Q ss_pred C--Ccee-----eeecC--C--CCCCeEEEEEccCCCEEEEEe
Q 000085 2190 N--GVLV-----ARAKL--P--LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2190 n--G~~L-----~s~~~--~--Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
. +..+ ..... . ++..+-.++|++.++.|+++-
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe
Confidence 3 2111 11111 1 556799999999888777664
No 384
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=89.10 E-value=5 Score=55.72 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=92.0
Q ss_pred CCEEE-EEEcCCcEEEEecCCcccceecccCCCC-eEEEEecC-----CCCEEEEEeCCCceEEEeccCCccccccccCC
Q 000085 2008 KEIIT-GGHVDGSIKLLTSDGAKTLETASGHCAP-VTCLALSS-----DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEP 2080 (2342)
Q Consensus 2008 GklLA-SGS~DGsIrVWDl~tgkll~tL~GHt~~-VtcLAfSP-----DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~ 2080 (2342)
.++|. .....+.++-.|+..|+.+..+..|.+. |..++=.. +....+.|-.+..+..||.+-...
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-------- 564 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-------- 564 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC--------
Confidence 33433 3345678999999999999999988765 65554321 133456677788899999875210
Q ss_pred CCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE-Ee
Q 000085 2081 SSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR-LV 2159 (2342)
Q Consensus 2081 ~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs-L~ 2159 (2342)
.++ + ...+ .+......+|++-+.+| +||.|+.+|.|++||- .|..-++ |.
T Consensus 565 --------------k~v---------~---~~~k-~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp 615 (794)
T PF08553_consen 565 --------------KLV---------D---SQSK-QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALP 615 (794)
T ss_pred --------------cee---------e---cccc-ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCC
Confidence 000 0 0001 12334567788766555 6889999999999993 4433333 33
Q ss_pred c--CCcEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2160 G--VDAHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2160 g--h~vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
+ ..+..|.++.||++++..+.+- +.+++
T Consensus 616 ~lG~pI~~iDvt~DGkwilaTc~ty-LlLi~ 645 (794)
T PF08553_consen 616 GLGDPIIGIDVTADGKWILATCKTY-LLLID 645 (794)
T ss_pred CCCCCeeEEEecCCCcEEEEeecce-EEEEE
Confidence 2 4588999999999998876543 44444
No 385
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=88.94 E-value=23 Score=45.96 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=64.7
Q ss_pred eEEEEEecCCCEEEEE-eCCC----cEEEEECCCCeEEEE-EecCCcEEEEEecCCcEEEEEeCCC-----------eEE
Q 000085 2123 ILCCCVSSDLGVVVSC-SDSS----DLLLHSIRRGRLIRR-LVGVDAHAVSLSSEGVIMTWNKLQH-----------TLS 2185 (2342)
Q Consensus 2123 Vt~VafSPDg~lLaSG-S~DG----tIrIWDLrTGklIrs-L~gh~vssLSfSpDG~IlVwdssdG-----------sI~ 2185 (2342)
+...+++|++++++-+ +..| ++++.|+.+|+.+.. +.......++|.+||+.+++...+. .+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 3467789999988743 4444 599999999987653 3433344499999999888874332 355
Q ss_pred EEEeCCceee-eecCC--CCC-CeEEEEEccCCCEEEEEeCCCC
Q 000085 2186 SFTLNGVLVA-RAKLP--LSG-SIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2186 I~dlnG~~L~-s~~~~--Hs~-~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
.+.+....-. ...+. ... ....+..++||++++..+..+.
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~ 249 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT 249 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc
Confidence 5555321111 11111 222 2678899999999997764444
No 386
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=88.49 E-value=1 Score=53.36 Aligned_cols=106 Identities=20% Similarity=0.196 Sum_probs=73.8
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCccee-EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSS-AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Sv-t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
.++.++.+++++.+.+|+..... ..+.. . ..+..++ +.+....++.+..+|++||.||.|++.-++.+...
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g----~~~d~-~---~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEG----AHSDR-V---CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred cCceEEeecccceEEEecCCccc----hHHHh-h---hcccccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence 34556677888899998754200 00111 1 1122222 22444455668899999999999999998888888
Q ss_pred ccCC-CCeEEEEecCCCCEEEEE--eCCCceEEEeccC
Q 000085 2035 SGHC-APVTCLALSSDSNFLVTG--SQDTTILLWRIHR 2069 (2342)
Q Consensus 2035 ~GHt-~~VtcLAfSPDG~~LaSG--S~DGTVrVWDl~t 2069 (2342)
.+|+ .++..+..+..++++++. |.|..++.|++..
T Consensus 141 g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 141 GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 8888 777777777778888888 8888899998875
No 387
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=88.44 E-value=1.2 Score=43.22 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=41.9
Q ss_pred CCCceEEEEeeeeEeeeeeeeEEEEEEEeeEEEEEeCCCCCCCCCCccccccccceEeeccceeEEeec
Q 000085 1470 ELDERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQEKDRSWLMSSLHQIYSR 1538 (2342)
Q Consensus 1470 e~~EkVils~~c~mVtPl~v~~G~L~IT~~~LyF~vd~~~~~~~~~~~~~~~~k~~~~~~~~I~~i~~R 1538 (2342)
+..|.++-+..|.+..+.....|+|.||+++|+|..+...... ....+++.+|..|-+.
T Consensus 10 p~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~----------~~~~ipl~~I~~i~k~ 68 (69)
T PF02893_consen 10 PEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT----------CKFVIPLSDIKSIEKE 68 (69)
T ss_dssp -TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-----------EEEEEGGGEEEEEEE
T ss_pred CCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce----------EEEEEEhHheeEEEEe
Confidence 3588999999999999999999999999999999864322110 2578899999988653
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.33 E-value=16 Score=44.88 Aligned_cols=156 Identities=13% Similarity=0.147 Sum_probs=93.6
Q ss_pred EEEecCCC-EEEEEeCCCc-EEEEECCCCeEEEEEecCCcE----EEEEecCCcEEEEEeC-----CCeEEEEEeCCcee
Q 000085 2126 CCVSSDLG-VVVSCSDSSD-LLLHSIRRGRLIRRLVGVDAH----AVSLSSEGVIMTWNKL-----QHTLSSFTLNGVLV 2194 (2342)
Q Consensus 2126 VafSPDg~-lLaSGS~DGt-IrIWDLrTGklIrsL~gh~vs----sLSfSpDG~IlVwdss-----dGsI~I~dlnG~~L 2194 (2342)
++|+|... -++.+-.-|+ ..++|..+++...++...+.. .=+||+||.++...-. .|.|-+|+......
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq 152 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ 152 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence 45555432 3344444443 467888887776665543321 2368999998775432 36789999874333
Q ss_pred eeecCC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC
Q 000085 2195 ARAKLP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH 2273 (2342)
Q Consensus 2195 ~s~~~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~ 2273 (2342)
....++ |.-....|.+.+||+.++.+. |.+. .+..|...... +.....++.+.|..
T Consensus 153 rvgE~~t~GiGpHev~lm~DGrtlvvan--GGIe---------------thpdfgR~~lN------ldsMePSlvlld~a 209 (366)
T COG3490 153 RVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIE---------------THPDFGRTELN------LDSMEPSLVLLDAA 209 (366)
T ss_pred eecccccCCcCcceeEEecCCcEEEEeC--Ccee---------------cccccCccccc------hhhcCccEEEEecc
Confidence 332232 666778899999999999763 3210 11111111111 11235678888888
Q ss_pred CCeEEEEEecC---CCCCeEEEEEecCCCEEEEE
Q 000085 2274 TLKVFHVLKLG---EGQDITALALNKDNTNLLVS 2304 (2342)
Q Consensus 2274 Tgk~L~tL~lg---Hs~~ItsLafSPDG~~LaSG 2304 (2342)
+|+++.+..+. +.-.|+.++..+||+.++.+
T Consensus 210 tG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 210 TGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred ccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 88877654432 34568889999999866654
No 389
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=87.03 E-value=0.34 Score=63.27 Aligned_cols=156 Identities=11% Similarity=0.139 Sum_probs=98.7
Q ss_pred ccCcceeEEEEEcCC-CCEEEEEE----cCCcEEEEecCCc--ccce--eccc-CCCCeEEEEecCCCCEEEEEeCCCce
Q 000085 1993 SSGIRSSAVVSITHD-KEIITGGH----VDGSIKLLTSDGA--KTLE--TASG-HCAPVTCLALSSDSNFLVTGSQDTTI 2062 (2342)
Q Consensus 1993 s~gI~Svt~VafSpD-GklLASGS----~DGsIrVWDl~tg--kll~--tL~G-Ht~~VtcLAfSPDG~~LaSGS~DGTV 2062 (2342)
+...+.+++++|++- .+.||+|. .|..+.|||+.++ .+.. .+.+ -...+..++|-.+.+.+.+|...+.+
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~ 178 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV 178 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence 344566788999874 45888885 4678999999876 2221 1222 33456688888888999999999999
Q ss_pred EEEeccCCccccccccCCCCCCccccccC-CCCCceeecCCCcccccc----CCceEEecCCCC----CeEEEEEecC-C
Q 000085 2063 LLWRIHRAFTSRTGTIEPSSGMGTPGNSI-GSSTPANASADKSRRRRI----EGPIHVLRGHHR----EILCCCVSSD-L 2132 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~~~~~~~~V~svs~Sp-DG~~Las~s~D~s~~~~i----~~~l~~L~GHs~----~Vt~VafSPD-g 2132 (2342)
+++|++....... ......+..+.+.| .+.+++....+.+..|+. +.++..+..... .+..++|+|. .
T Consensus 179 ~ifdlRqs~~~~~--svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt 256 (783)
T KOG1008|consen 179 HIFDLRQSLDSVS--SVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT 256 (783)
T ss_pred hhhhhhhhhhhhh--hhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc
Confidence 9999984211110 11112344455566 556666655555555663 334443333333 4899999986 3
Q ss_pred CEEEEEeCC-CcEEEEECC
Q 000085 2133 GVVVSCSDS-SDLLLHSIR 2150 (2342)
Q Consensus 2133 ~lLaSGS~D-GtIrIWDLr 2150 (2342)
.++++...| ++|+.+|+.
T Consensus 257 glla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 257 GLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred chhhhhccCcceEEEeccc
Confidence 455666654 789999985
No 390
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.38 E-value=25 Score=42.94 Aligned_cols=101 Identities=21% Similarity=0.194 Sum_probs=60.7
Q ss_pred CeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeEEEE-EecCCcEEEEEecCCcEEEEEeCCCeEEEEE--eCCceee-e
Q 000085 2122 EILCCCVSSDLGVVVSCS-DSSDLLLHSIRRGRLIRR-LVGVDAHAVSLSSEGVIMTWNKLQHTLSSFT--LNGVLVA-R 2196 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTGklIrs-L~gh~vssLSfSpDG~IlVwdssdGsI~I~d--lnG~~L~-s 2196 (2342)
.+...++++++..++... .++.-.+|-...+..... +.+.....-+|+++|.+.+....+....++. ..+.... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 678899999998776655 233333333333333333 3555566778999988777765555544543 2232211 1
Q ss_pred ecCCCC-CCeEEEEEccCCCEEEEEeC
Q 000085 2197 AKLPLS-GSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2197 ~~~~Hs-~~ItsLafSPDGk~LaSGS~ 2222 (2342)
...... ..|+++.+||||..++.-..
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~ 131 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVE 131 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEe
Confidence 111112 28999999999999887653
No 391
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=85.90 E-value=83 Score=39.84 Aligned_cols=142 Identities=16% Similarity=0.153 Sum_probs=80.5
Q ss_pred CCeEEEEEecCCCEEEEEeC-----------CCcEEEEECCCCeEEEEEecC--CcEEEEEecCCcEEE-EEeCCCeEEE
Q 000085 2121 REILCCCVSSDLGVVVSCSD-----------SSDLLLHSIRRGRLIRRLVGV--DAHAVSLSSEGVIMT-WNKLQHTLSS 2186 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS~-----------DGtIrIWDLrTGklIrsL~gh--~vssLSfSpDG~IlV-wdssdGsI~I 2186 (2342)
...+.+.+.|+|.+.++... -|.|+..|. .+..++.+..+ ..+.++|||||+.+. .++..+.++.
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 34567788888887665443 133444444 45555555442 246799999996554 4555678888
Q ss_pred EEeCC---ceeee---ecC-CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCC
Q 000085 2187 FTLNG---VLVAR---AKL-PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2187 ~dlnG---~~L~s---~~~-~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ 2259 (2342)
|++.. ..-.. ... ...+..-.++...+|.+.+++.
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~-------------------------------------- 231 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV-------------------------------------- 231 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc--------------------------------------
Confidence 87752 11000 000 0223333444444444443221
Q ss_pred ccCCC-CeEEEEECCCCeEEEEEecCCCCCeEEEEEe-cCCCEEEEEeC
Q 000085 2260 FDFPS-PSICFLDLHTLKVFHVLKLGEGQDITALALN-KDNTNLLVSTA 2306 (2342)
Q Consensus 2260 ias~D-GsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS-PDG~~LaSGSs 2306 (2342)
.+ +.|.+|+.. ++.+..+...+ ..+++++|- ++.+.|++.+.
T Consensus 232 ---~~g~~v~~~~pd-G~l~~~i~lP~-~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 232 ---WGGGRVVRFNPD-GKLLGEIKLPV-KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ---cCCceEEEECCC-CcEEEEEECCC-CCCccceEeCCCcCEEEEEec
Confidence 12 378899988 88888888444 567888875 45566655443
No 392
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=85.81 E-value=1.5e+02 Score=40.29 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=23.0
Q ss_pred cCCC---EEEEEeCCCcEEEEECCCCeEEE
Q 000085 2130 SDLG---VVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2130 PDg~---lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
.+|+ .++.+.++|.+++.|-++|+.+.
T Consensus 310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 310 KDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred cCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 4665 78899999999999999999863
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=85.79 E-value=30 Score=47.31 Aligned_cols=60 Identities=3% Similarity=-0.070 Sum_probs=33.8
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeE--EEEEecCCcEEEEEecCCcEEEEEeCCC------eEEEEEeC
Q 000085 2131 DLGVVVSCSDSS-----DLLLHSIRRGRL--IRRLVGVDAHAVSLSSEGVIMTWNKLQH------TLSSFTLN 2190 (2342)
Q Consensus 2131 Dg~lLaSGS~DG-----tIrIWDLrTGkl--IrsL~gh~vssLSfSpDG~IlVwdssdG------sI~I~dln 2190 (2342)
+|.+.|.||.|| +|-.||..+.+. +..+.......-...-+|.+.+.++.++ .+..|+..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~ 452 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPE 452 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCC
Confidence 577778888886 466677765432 2212111123334455788887776443 45666654
No 394
>PHA02713 hypothetical protein; Provisional
Probab=84.92 E-value=39 Score=46.07 Aligned_cols=51 Identities=4% Similarity=-0.137 Sum_probs=27.7
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeEEE--EEecCCcEEEEEecCCcEEEEEeCC
Q 000085 2131 DLGVVVSCSDSS-----DLLLHSIRRGRLIR--RLVGVDAHAVSLSSEGVIMTWNKLQ 2181 (2342)
Q Consensus 2131 Dg~lLaSGS~DG-----tIrIWDLrTGklIr--sL~gh~vssLSfSpDG~IlVwdssd 2181 (2342)
++.+.+.||.++ ++..||..+.+-.. .+........+..-+|.+.+.++.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~ 408 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRT 408 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCC
Confidence 566667777654 47788887764322 1111111122234478888877644
No 395
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.81 E-value=44 Score=41.59 Aligned_cols=104 Identities=11% Similarity=0.186 Sum_probs=79.8
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CcEEEEEecCCcEEEEEeCCCeEEEEEeCCc-
Q 000085 2117 RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV---DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV- 2192 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh---~vssLSfSpDG~IlVwdssdGsI~I~dlnG~- 2192 (2342)
.|-...+.++.|+|+.+.+++......-.||=..+|+.++++... ....+.+..+|.+.+.+-++..+.++.++..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 344556999999999999999988888889988899999998753 3567788889999999999999888887532
Q ss_pred -eeee----ec---CCC-CCCeEEEEEccCCCEEEEE
Q 000085 2193 -LVAR----AK---LPL-SGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2193 -~L~s----~~---~~H-s~~ItsLafSPDGk~LaSG 2220 (2342)
.+.. .. ..+ +...-.++|+|..+.+..+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a 198 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA 198 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEE
Confidence 1111 11 113 6678889999988777765
No 396
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=84.43 E-value=9.3 Score=52.01 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=77.9
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc-cCCCCeEEEEec--CCCCEEEEEeCCCceEEEeccCCc
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS-GHCAPVTCLALS--SDSNFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~-GHt~~VtcLAfS--PDG~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
++.....+.-|.-++..++.+....+.|||...+.....-. ...+.|.++.|. |||+.+++.+..+.|.++.-....
T Consensus 28 ~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 28 GISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 34444456666667766666666789999998876433211 356789999995 689999999999999998653311
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHH-REILCCCVSSDLGVVVSCSDSSDLLLHSI 2149 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs-~~Vt~VafSPDg~lLaSGS~DGtIrIWDL 2149 (2342)
... ....|..-+ ...+..|+ .+|.+..|.++|..++.++ +.+.|+|-
T Consensus 108 y~~----------------------------~~p~w~~i~-~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 108 YTN----------------------------KGPSWAPIR-KIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhc----------------------------CCcccceeE-EEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 000 000010000 11123343 5789999999998776554 46777764
No 397
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.05 E-value=8.8 Score=50.17 Aligned_cols=136 Identities=14% Similarity=0.211 Sum_probs=84.0
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcE-------EEEEeCCCeEEEEEeC--Cc-eeee---ecCCC
Q 000085 2136 VSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVI-------MTWNKLQHTLSSFTLN--GV-LVAR---AKLPL 2201 (2342)
Q Consensus 2136 aSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~I-------lVwdssdGsI~I~dln--G~-~L~s---~~~~H 2201 (2342)
.++..-..++-.|+.+|+.+.....+. +..+.+.|+++. -+.+..+..+..|+.. |. .+.. ..+..
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~ 429 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST 429 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc
Confidence 345555678888999999998887654 577777776642 2345556666666653 22 1110 00112
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEE
Q 000085 2202 SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVL 2281 (2342)
Q Consensus 2202 s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL 2281 (2342)
.....|.+-..+|. +++|| .+|.|++||- .+..-.+.
T Consensus 430 k~nFsc~aTT~sG~-IvvgS-----------------------------------------~~GdIRLYdr-i~~~AKTA 466 (644)
T KOG2395|consen 430 KNNFSCFATTESGY-IVVGS-----------------------------------------LKGDIRLYDR-IGRRAKTA 466 (644)
T ss_pred ccccceeeecCCce-EEEee-----------------------------------------cCCcEEeehh-hhhhhhhc
Confidence 23344444444442 33333 3788999998 55544444
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2282 KLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2282 ~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
..+-+.+|..|..+.||.+|+.. .+..|.+-+.
T Consensus 467 lPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t 499 (644)
T KOG2395|consen 467 LPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDT 499 (644)
T ss_pred ccccCCceeeEEeeccCcEEEEe-cccEEEEEEE
Confidence 44889999999999999987754 4566766663
No 398
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=81.71 E-value=2.5e+02 Score=40.01 Aligned_cols=56 Identities=25% Similarity=0.208 Sum_probs=38.1
Q ss_pred CCeEEEEECCCCeEEEEEecCCCC--------CeEEEEEec-CCC---EEEEEeCCCcEEEEeCCCCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQ--------DITALALNK-DNT---NLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~--------~ItsLafSP-DG~---~LaSGSsDGsIrVWDi~sLs 2319 (2342)
.++|.-.|..||+....++..|.+ ...-+.+.. +|+ .++.++.+|.++++|..+.+
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 567888999999988887743321 111223333 563 78899999999999976553
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.53 E-value=42 Score=40.42 Aligned_cols=128 Identities=16% Similarity=0.080 Sum_probs=79.2
Q ss_pred CccccccCCCCCceeecCCCcccccc-CC-ceEEecCCC--------CCeEEEEEecCCCEE-EEEeCCCcEEEEE--CC
Q 000085 2084 MGTPGNSIGSSTPANASADKSRRRRI-EG-PIHVLRGHH--------REILCCCVSSDLGVV-VSCSDSSDLLLHS--IR 2150 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s~~~~i-~~-~l~~L~GHs--------~~Vt~VafSPDg~lL-aSGS~DGtIrIWD--Lr 2150 (2342)
...-..+|+|++.+....+....... .. ...-+.+|. .--+.++|+.+.+.+ ++-+.+-+|.-|| ..
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~ 190 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCP 190 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCC
Confidence 34445678888865544442211111 11 122223332 333567888776655 4666777887787 56
Q ss_pred CCeE-----EEEEec------CCcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEcc
Q 000085 2151 RGRL-----IRRLVG------VDAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISL 2212 (2342)
Q Consensus 2151 TGkl-----IrsL~g------h~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSP 2212 (2342)
+|.. +..++. ....-+++..+|.+.+.....+++..++.. |+.+.+..++ ...|+|++|-.
T Consensus 191 tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFgG 263 (310)
T KOG4499|consen 191 TGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFGG 263 (310)
T ss_pred cccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEecC
Confidence 6643 333332 113456677799999988888999888875 7777777766 78899999964
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=81.41 E-value=3.1 Score=38.02 Aligned_cols=34 Identities=6% Similarity=0.236 Sum_probs=29.9
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q 000085 2120 HREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL 2154 (2342)
Q Consensus 2120 s~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl 2154 (2342)
...|.+++|+|..++++.|+.||.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 5543
No 401
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=81.21 E-value=36 Score=36.82 Aligned_cols=92 Identities=11% Similarity=0.175 Sum_probs=57.7
Q ss_pred eEEEEEec---C-CCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee
Q 000085 2123 ILCCCVSS---D-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2123 Vt~VafSP---D-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~ 2197 (2342)
|+++++.. | .+.|+.||.|..|++|+ ....+..+.-. .+..++-... ..++++..+|+|-+|+-..+.-+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRi- 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRI- 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeee-
Confidence 56677654 2 25799999999999998 44666666543 3555555555 457888889998888754322111
Q ss_pred cCCCCCCeEEEEEcc---CCC-EEEEE
Q 000085 2198 KLPLSGSIGCMEISL---DGH-SALIG 2220 (2342)
Q Consensus 2198 ~~~Hs~~ItsLafSP---DGk-~LaSG 2220 (2342)
.....++++++.. ||. -|++|
T Consensus 78 --KSK~~~~~~~~~D~~gdG~~eLI~G 102 (111)
T PF14783_consen 78 --KSKNQVTSMAFYDINGDGVPELIVG 102 (111)
T ss_pred --ccCCCeEEEEEEcCCCCCceEEEEE
Confidence 1334566766543 332 45555
No 402
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=80.10 E-value=4.9 Score=47.89 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=41.7
Q ss_pred CCEEEEEEcCCcEEEEecCC-cccceecccCCCCeEEE-EecCCCCEEEEEeCCCceEEEeccCC
Q 000085 2008 KEIITGGHVDGSIKLLTSDG-AKTLETASGHCAPVTCL-ALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~t-gkll~tL~GHt~~VtcL-AfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
+.-+++|+.+|.|++|+..- |........-...|.|. .-..++.+.++++.||.|+.|++.-.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 45688899999999999862 22222222222333333 33345678999999999999998764
No 403
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=80.07 E-value=1.8e+02 Score=36.87 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=45.8
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecC------Ccc-cceeccc-----CCCCeEEEEecCCCCE------------EEEEe
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSD------GAK-TLETASG-----HCAPVTCLALSSDSNF------------LVTGS 2057 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~------tgk-ll~tL~G-----Ht~~VtcLAfSPDG~~------------LaSGS 2057 (2342)
++++|.+.+-++....+...+||.. ..+ ++-++.. -....|.+.|+....+ ++.++
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t 107 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT 107 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence 7889999888888788899999986 111 2223331 2245777888754333 56678
Q ss_pred CCCceEEEeccC
Q 000085 2058 QDTTILLWRIHR 2069 (2342)
Q Consensus 2058 ~DGTVrVWDl~t 2069 (2342)
.||||.-|...-
T Consensus 108 EdGTisaW~p~v 119 (336)
T TIGR03118 108 EDGTLSGWAPAL 119 (336)
T ss_pred CCceEEeecCcC
Confidence 888888887543
No 404
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=79.86 E-value=1.5e+02 Score=35.99 Aligned_cols=94 Identities=14% Similarity=0.176 Sum_probs=57.2
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE---------------EEec-CCcEEEE--EecCCcEEEEEeCCCeE
Q 000085 2123 ILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR---------------RLVG-VDAHAVS--LSSEGVIMTWNKLQHTL 2184 (2342)
Q Consensus 2123 Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr---------------sL~g-h~vssLS--fSpDG~IlVwdssdGsI 2184 (2342)
|..+.+.++-+.++.-+ |+.++++++..-.... .+.. .++...+ -...+...+.-.....+
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 88999988887776665 4999999987544332 1111 1233333 23344444444445578
Q ss_pred EEEEeCC------ceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2185 SSFTLNG------VLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2185 ~I~dlnG------~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.+|.... ..+.+. .....+.+++|. +..++.|.
T Consensus 117 ~i~~~~~~~~~f~~~~ke~--~lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEI--SLPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred EEEEEECCcccccceeEEE--EcCCCcEEEEEe--CCEEEEEe
Confidence 8887754 222332 255888999998 66677775
No 405
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=79.84 E-value=88 Score=39.84 Aligned_cols=48 Identities=10% Similarity=0.156 Sum_probs=32.8
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCccc---cee----cccCCCCeEEEEecCC
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKT---LET----ASGHCAPVTCLALSSD 2049 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkl---l~t----L~GHt~~VtcLAfSPD 2049 (2342)
..++|.|||+++++- ..|.|++++. .+.. +.. ..........++++|+
T Consensus 5 ~~~a~~pdG~l~v~e-~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAE-RSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEETTSCEEEEE-TTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred eEEEEeCCCcEEEEe-CCceEEEEeC-CCcCcceecccccccccccCCcccceeccc
Confidence 458999999988764 5999999993 3332 211 2334567899999995
No 406
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.78 E-value=13 Score=48.59 Aligned_cols=137 Identities=17% Similarity=0.201 Sum_probs=90.3
Q ss_pred EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCC--EE-----EEEeCCCceEEEeccCCccccccccCCCC
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSN--FL-----VTGSQDTTILLWRIHRAFTSRTGTIEPSS 2082 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~--~L-----aSGS~DGTVrVWDl~tg~~i~t~~~~~~~ 2082 (2342)
++..|..-..++-.|++.|+.+....-|.+ |+-+.+.|+.+ .| +.|=.|..|.-||.+-....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--------- 417 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--------- 417 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---------
Confidence 455666667888899999999999988887 88888888753 22 23556777888887642100
Q ss_pred CCccccccCCCCCceeecCCCccccccCCceEEecCC----CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE-
Q 000085 2083 GMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH----HREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR- 2157 (2342)
Q Consensus 2083 ~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH----s~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs- 2157 (2342)
. +...++| .....|.+-.. ..+||.||.+|.|++||- .+...++
T Consensus 418 ------------k-----------------l~~~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~AKTA 466 (644)
T KOG2395|consen 418 ------------K-----------------LAVVQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGRRAKTA 466 (644)
T ss_pred ------------e-----------------eeeeeccccccccccceeeecC-CceEEEeecCCcEEeehh-hhhhhhhc
Confidence 0 0111122 23455665544 457899999999999996 5544333
Q ss_pred Eec--CCcEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2158 LVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2158 L~g--h~vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
+.+ ..+..+..+.||+.++..+.+ .+.+.+
T Consensus 467 lPgLG~~I~hVdvtadGKwil~Tc~t-yLlLi~ 498 (644)
T KOG2395|consen 467 LPGLGDAIKHVDVTADGKWILATCKT-YLLLID 498 (644)
T ss_pred ccccCCceeeEEeeccCcEEEEeccc-EEEEEE
Confidence 333 457889999999998876644 333433
No 407
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=79.34 E-value=5.1 Score=37.93 Aligned_cols=56 Identities=11% Similarity=0.187 Sum_probs=42.5
Q ss_pred CCceEEEEeeeeEeeeeeeeEEEEEEEeeEEEEEeCCCCCCCCCCccccccccceEeeccceeEEee
Q 000085 1471 LDERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQEKDRSWLMSSLHQIYS 1537 (2342)
Q Consensus 1471 ~~EkVils~~c~mVtPl~v~~G~L~IT~~~LyF~vd~~~~~~~~~~~~~~~~k~~~~~~~~I~~i~~ 1537 (2342)
..|+++.+..|-+. ......|++.||+++|+|..+.... ......+++.+|..|-+
T Consensus 4 ~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~----------~~~~~~ipl~~I~~i~k 59 (61)
T smart00568 4 EEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGK----------LTPKVVIPLADITRIEK 59 (61)
T ss_pred CCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCC----------eeEEEEEEHHHeeEEEE
Confidence 57889999999998 5577899999999999998432111 10156788889988865
No 408
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=78.64 E-value=2.6e+02 Score=38.05 Aligned_cols=114 Identities=11% Similarity=0.031 Sum_probs=67.9
Q ss_pred cCCCCeEEEEecCC----CCEEEEEeCCCceEEEeccCCcc-----cccc--c--cCCCCCCccccccCCCCCceeecCC
Q 000085 2036 GHCAPVTCLALSSD----SNFLVTGSQDTTILLWRIHRAFT-----SRTG--T--IEPSSGMGTPGNSIGSSTPANASAD 2102 (2342)
Q Consensus 2036 GHt~~VtcLAfSPD----G~~LaSGS~DGTVrVWDl~tg~~-----i~t~--~--~~~~~~V~svs~SpDG~~Las~s~D 2102 (2342)
|.-.-|..+.|.|- -..|........|.||.+..... .... . ...+.-...+.|+|....+++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 34456899999985 33566777889999999863211 1111 1 1122234556788877777665544
Q ss_pred Ccc-cc----ccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECC
Q 000085 2103 KSR-RR----RIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIR 2150 (2342)
Q Consensus 2103 ~s~-~~----~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLr 2150 (2342)
... .. +.......+ .-.+-|.|.||..||+.++.+- ..=.-++||-.
T Consensus 134 dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 332 21 112222233 3457899999999998876543 33356788753
No 409
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=77.94 E-value=2e+02 Score=38.16 Aligned_cols=63 Identities=21% Similarity=0.157 Sum_probs=32.4
Q ss_pred CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC---CeEEE
Q 000085 2203 GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT---LKVFH 2279 (2342)
Q Consensus 2203 ~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T---gk~L~ 2279 (2342)
.-|+.+.+|.|.++|..... .+|.|+.||+.. .+.+.
T Consensus 312 ~LitDI~iSlDDrfLYvs~W----------------------------------------~~GdvrqYDISDP~~Pkl~g 351 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNW----------------------------------------LHGDVRQYDISDPFNPKLVG 351 (461)
T ss_dssp -----EEE-TTS-EEEEEET----------------------------------------TTTEEEEEE-SSTTS-EEEE
T ss_pred CceEeEEEccCCCEEEEEcc----------------------------------------cCCcEEEEecCCCCCCcEEe
Confidence 45799999999999997752 157788888864 34444
Q ss_pred EEecCC---------------CCCeEEEEEecCCCEEEEEe
Q 000085 2280 VLKLGE---------------GQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2280 tL~lgH---------------s~~ItsLafSPDG~~LaSGS 2305 (2342)
.+..+- .+...-|..|.||+.|.+.+
T Consensus 352 qv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 352 QVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 443221 12346788999999888765
No 410
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=77.86 E-value=2.2 Score=57.82 Aligned_cols=66 Identities=26% Similarity=0.308 Sum_probs=46.7
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEe-----------cCCCCEEEEEeCCCceEEEecc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLAL-----------SSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAf-----------SPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
+-|.++.-++.+|-.+++|++..+++... ..+.+|...++.++| ||||..+++++.||.++.|.+.
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred cccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 34455667888898999999988776433 456678888777665 6677777777777777776654
No 411
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=77.74 E-value=1.1e+02 Score=37.91 Aligned_cols=215 Identities=13% Similarity=0.009 Sum_probs=128.3
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc--ccC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG--TIE 2079 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~--~~~ 2079 (2342)
|+-++||.+-.++...+.|--.|..+|+....--+....-..|..-|||..-++-+.. -|.-.|-++....+-. ...
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~ 145 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEH 145 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccccc
Confidence 7789999988999888999888999988766555544455667778888776664433 3333344332221111 122
Q ss_pred CCCCCccccccCCCCCceeecCCCcccccc-CCceEEecCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRI-EGPIHVLRGH-HREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i-~~~l~~L~GH-s~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
.........|.+.|....++...-..+.+. ...+.++... ...-..||..|+|..-++.-.+..|-..|..++.. ..
T Consensus 146 a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev 224 (353)
T COG4257 146 ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EV 224 (353)
T ss_pred CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCc-ce
Confidence 234556667777787766655432222222 2234444433 23457888899999888877777888888777632 22
Q ss_pred Eec-----CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC-CCCCeEEEEEccCCCEEE
Q 000085 2158 LVG-----VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP-LSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2158 L~g-----h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~-Hs~~ItsLafSPDGk~La 2218 (2342)
+.. ...+-+-.++.|++.+....++.++.|+.....-.+..++ ....-.++.+...|+.-+
T Consensus 225 ~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 225 VPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred ecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe
Confidence 221 1234556677888777766677787777654333333333 334455555555544443
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=77.27 E-value=1.1e+02 Score=37.37 Aligned_cols=100 Identities=14% Similarity=0.013 Sum_probs=57.3
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEE-CCCCeEEE-EEec---C-CcEEEEEecCCcEEEEEe---CCCeEEEEEeC--
Q 000085 2122 EILCCCVSSDLGVVVSCSDSSDLLLHS-IRRGRLIR-RLVG---V-DAHAVSLSSEGVIMTWNK---LQHTLSSFTLN-- 2190 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS~DGtIrIWD-LrTGklIr-sL~g---h-~vssLSfSpDG~IlVwds---sdGsI~I~dln-- 2190 (2342)
.++.-.|++++...+....+...+++. ..++.... .+.. . .+..+.+|+||.-++.-. ..+.+.+-.+.
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 455667777766555555555555553 33333221 1111 1 578899999998665544 24566655442
Q ss_pred --C--ceee---eecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2191 --G--VLVA---RAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2191 --G--~~L~---s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
| ..+. .........+..+.|.+++.+++.+.
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 2 0111 01111346889999999999888775
No 413
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=76.90 E-value=44 Score=43.04 Aligned_cols=96 Identities=10% Similarity=0.034 Sum_probs=53.8
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCC-C----e--E-EEEEec------CCcEEEEEecCCcEEEEEeCC------
Q 000085 2122 EILCCCVSSDLGVVVSCSDSSDLLLHSIRR-G----R--L-IRRLVG------VDAHAVSLSSEGVIMTWNKLQ------ 2181 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT-G----k--l-IrsL~g------h~vssLSfSpDG~IlVwdssd------ 2181 (2342)
..+.+++.+++ +++ ++.+...++.|... + + . +..+.. |....+++.+||.+.+.....
T Consensus 73 ~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence 45778888877 444 34443333434421 1 1 1 122221 335678899999887755421
Q ss_pred -------------CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2182 -------------HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2182 -------------GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
+.+..++..+..+.....+ -.....++|+++|+++++-
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G-~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHG-FQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecC-cCCCccceECCCCCEEEEc
Confidence 3455555555544433222 2345789999999987753
No 414
>PF14470 bPH_3: Bacterial PH domain
Probab=76.24 E-value=34 Score=34.95 Aligned_cols=91 Identities=14% Similarity=0.186 Sum_probs=62.7
Q ss_pred CCceEEEEeeeeEeeeeeeeEEEEEEEeeEEEEEeCCCCCCCCCCccccccccceEeeccceeEEeeccccCcccEEEEE
Q 000085 1471 LDERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELF 1550 (2342)
Q Consensus 1471 ~~EkVils~~c~mVtPl~v~~G~L~IT~~~LyF~vd~~~~~~~~~~~~~~~~k~~~~~~~~I~~i~~Rr~~l~~~alEif 1550 (2342)
.+|.|.+.+.|.+.......+|.+.+|+++|+|.-... . .......+++++|..|-...-++. ..|.|.
T Consensus 3 ~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~---------~-~~~~~~~i~y~~I~~v~~~~g~~~-~~i~i~ 71 (96)
T PF14470_consen 3 EDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGM---------F-GGKKFESIPYDDITSVSFKKGILG-GKITIE 71 (96)
T ss_pred CCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEccc---------C-CCceEEEEEhhheEEEEEEccccc-cEEEEE
Confidence 57899999999887677789999999999999983310 0 012457889999999988765544 458888
Q ss_pred EeCCceE-EEEcCChhhHHHHHHHH
Q 000085 1551 MVDRSNF-FFDFGSTEGRRNAYRAI 1574 (2342)
Q Consensus 1551 ~~~~~s~-f~~F~~~~~~~~~~~~i 1574 (2342)
+ ++..+ +-++ +..+-+.+++.|
T Consensus 72 ~-~~~~~~i~~i-~k~~~~~~~~~i 94 (96)
T PF14470_consen 72 T-NGEKIKIDNI-QKGDVKEFYEYI 94 (96)
T ss_pred E-CCEEEEEEEc-CHHHHHHHHHHH
Confidence 8 55444 3335 334444555443
No 415
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=75.89 E-value=6.6 Score=35.96 Aligned_cols=31 Identities=19% Similarity=0.609 Sum_probs=28.5
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCceEEEecc
Q 000085 2038 CAPVTCLALSSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
...|.+++|+|...+|+.|+.||.|.+++++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999984
No 416
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.23 E-value=98 Score=38.75 Aligned_cols=187 Identities=11% Similarity=0.078 Sum_probs=105.0
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcc--------
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSR-------- 2105 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~-------- 2105 (2342)
+.|-+..|.++.|+|+.+.|++......-.||=...|..+++.........-.+.+.-+|++.++.-.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 445555699999999999999998888888887777777776632223333334444344443332222110
Q ss_pred --ccccCCceEEe---cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE---EE---------EEecCCcEEEEE
Q 000085 2106 --RRRIEGPIHVL---RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL---IR---------RLVGVDAHAVSL 2168 (2342)
Q Consensus 2106 --~~~i~~~l~~L---~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl---Ir---------sL~gh~vssLSf 2168 (2342)
..........+ .......-.++|+|....+..+=+-.-+.|+.+..+.. +. .+....+..+.+
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 00111111111 12255677899999888888777777777776653221 00 011112334445
Q ss_pred ec-CCcEEEEEeCCCeEEEEEeCCceeeeecCC---C-----CCCeEEEEEccCCCEEEEE
Q 000085 2169 SS-EGVIMTWNKLQHTLSSFTLNGVLVARAKLP---L-----SGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2169 Sp-DG~IlVwdssdGsI~I~dlnG~~L~s~~~~---H-----s~~ItsLafSPDGk~LaSG 2220 (2342)
.+ .|.+++-+..++.+.-.+..|..+...... | -.+--.++..++|..-+++
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 43 456667676677777677766554332221 1 1244567777777765544
No 417
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.28 E-value=39 Score=48.06 Aligned_cols=100 Identities=9% Similarity=-0.104 Sum_probs=70.2
Q ss_pred CeEEEEEecCC-CEEEEEeCCCcEEEEECCCC-eEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeec
Q 000085 2122 EILCCCVSSDL-GVVVSCSDSSDLLLHSIRRG-RLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAK 2198 (2342)
Q Consensus 2122 ~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTG-klIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~ 2198 (2342)
-..|+.|.|.- ...+.+..|+.|++..+... ..+.++.. ...++++|++.|+.++.+...|++..|...+.......
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip 236 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIP 236 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeeccc
Confidence 45577787753 34566778888888776432 22233222 34689999999999999999999999988765444333
Q ss_pred CC---CCCCeEEEEEccCCCEEEEEe
Q 000085 2199 LP---LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2199 ~~---Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.+ ....|.||+|-....++++-+
T Consensus 237 ~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 237 EPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred CCCcCCCcceeEEEEecceeEEEEec
Confidence 22 357899999998888887553
No 418
>PHA03098 kelch-like protein; Provisional
Probab=73.74 E-value=81 Score=42.53 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=31.3
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeEEEEE--ecCCcEEEEEecCCcEEEEEeCC--------CeEEEEEeC
Q 000085 2131 DLGVVVSCSDS------SDLLLHSIRRGRLIRRL--VGVDAHAVSLSSEGVIMTWNKLQ--------HTLSSFTLN 2190 (2342)
Q Consensus 2131 Dg~lLaSGS~D------GtIrIWDLrTGklIrsL--~gh~vssLSfSpDG~IlVwdssd--------GsI~I~dln 2190 (2342)
++.+.+.||.+ ..+..||+.+++-...- ........+...++.+++.+..+ ..+..|+..
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCC
Confidence 45666666632 35788888776543211 11111122344567777777542 126666654
No 419
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=73.58 E-value=3.1e+02 Score=38.89 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=50.6
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEec---------CCcccc---eec--------ccCCCCeEEEEecCC---CCEEE
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTS---------DGAKTL---ETA--------SGHCAPVTCLALSSD---SNFLV 2054 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl---------~tgkll---~tL--------~GHt~~VtcLAfSPD---G~~La 2054 (2342)
.|.-+.++++|++++..+..|.+.+.=. +.|+.. +++ ..+...|..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 4556899999998888776665444321 112211 111 234567999999996 58899
Q ss_pred EEeCCCceEEEeccCC
Q 000085 2055 TGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 2055 SGS~DGTVrVWDl~tg 2070 (2342)
.-..|+++++||+...
T Consensus 166 vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDP 181 (717)
T ss_pred EEecCCEEEEEecCCC
Confidence 9999999999999764
No 420
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=72.56 E-value=78 Score=40.76 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=35.4
Q ss_pred eeEEEEEcCCCCEEEEEE-----------cCC-cEEEEecCC--ccc--ceecccCCCCeEEEEecCCCCEEEEEeCC
Q 000085 1998 SSAVVSITHDKEIITGGH-----------VDG-SIKLLTSDG--AKT--LETASGHCAPVTCLALSSDSNFLVTGSQD 2059 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS-----------~DG-sIrVWDl~t--gkl--l~tL~GHt~~VtcLAfSPDG~~LaSGS~D 2059 (2342)
....++|.++|+++++-. ..+ .|.+++-.+ |+. ...+.......+.+++.++| .+++ +.+
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~ 90 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP 90 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC
Confidence 345589999999877642 123 676665432 332 23333333456889998888 5444 444
No 421
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=72.34 E-value=1.1e+02 Score=43.28 Aligned_cols=68 Identities=15% Similarity=0.096 Sum_probs=43.7
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCCCCeE-------------EEEecC--CCCEEEEEeC----------CCce
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVT-------------CLALSS--DSNFLVTGSQ----------DTTI 2062 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt~~Vt-------------cLAfSP--DG~~LaSGS~----------DGTV 2062 (2342)
+..|+.++.|+.+.-.|.++|+.+..+. +.+.|. .+.-.| .+..++.|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 4477788889999999999998886553 222110 111112 1345666643 6889
Q ss_pred EEEeccCCcccccc
Q 000085 2063 LLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~ 2076 (2342)
+-+|..+++.....
T Consensus 339 ~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 339 RAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCcEeeEE
Confidence 99999998765544
No 422
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=71.44 E-value=75 Score=39.31 Aligned_cols=99 Identities=12% Similarity=0.124 Sum_probs=70.0
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecC
Q 000085 2122 EILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKL 2199 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~ 2199 (2342)
.-..|+-.+||..-+++...|.|--.|.++|+..+.--+ ...+.+.+.|||...+.+... .|..++-+...+.+..+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 445778889998888888888888899999987665443 335788899999977776543 44444433222333322
Q ss_pred C---CCCCeEEEEEccCCCEEEEEe
Q 000085 2200 P---LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2200 ~---Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+ -........|.+.|..-++|.
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q 166 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQ 166 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeec
Confidence 2 356788899999999999885
No 423
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=71.27 E-value=1.5e+02 Score=40.70 Aligned_cols=61 Identities=3% Similarity=-0.085 Sum_probs=34.8
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCeEEEE--EecCCcEEEEEecCCcEEEEEeCCC-----eEEEEEeCC
Q 000085 2131 DLGVVVSCSDSS------DLLLHSIRRGRLIRR--LVGVDAHAVSLSSEGVIMTWNKLQH-----TLSSFTLNG 2191 (2342)
Q Consensus 2131 Dg~lLaSGS~DG------tIrIWDLrTGklIrs--L~gh~vssLSfSpDG~IlVwdssdG-----sI~I~dlnG 2191 (2342)
+|.+.+.||.|+ ++..||..++..... +.......-+..-++.+++.++.++ ++..|+...
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCC
Confidence 577777888665 456788777654322 2211222234556777777776554 255566543
No 424
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.50 E-value=48 Score=46.48 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCCCCeEEEEEecC---CCEEEEEeCCCcEEEEeCCCC
Q 000085 2284 GEGQDITALALNKD---NTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2284 gHs~~ItsLafSPD---G~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.+...|..+.|+|. +.+|++=+.|+++|+||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 34567999999996 589999999999999997543
No 425
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=66.86 E-value=1.3e+02 Score=42.75 Aligned_cols=82 Identities=6% Similarity=-0.022 Sum_probs=50.5
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEE-EeCCC-----ceEEEeccCCccccccccCCCCCCccccccC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVT-GSQDT-----TILLWRIHRAFTSRTGTIEPSSGMGTPGNSI 2091 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaS-GS~DG-----TVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp 2091 (2342)
+.+.+-|.+.......-..+..+|..-+|||||++|+- .|..+ .|.+-++.+..............|..-.+..
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e 408 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLE 408 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecC
Confidence 47778887765554431447889999999999999987 45444 4777788764322111222244444455556
Q ss_pred CCCCceee
Q 000085 2092 GSSTPANA 2099 (2342)
Q Consensus 2092 DG~~Las~ 2099 (2342)
+|..+++.
T Consensus 409 ~gdt~ivy 416 (912)
T TIGR02171 409 NGDTVIVY 416 (912)
T ss_pred CCCeEEEE
Confidence 66655443
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.99 E-value=1.2e+02 Score=42.04 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=38.1
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
-.|+||++. |+.+..+.-..+.+..+.|+.+ ..|+....||++.|+++...
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchh
Confidence 358888874 5666655443447889999954 67777899999999999764
No 427
>PHA02713 hypothetical protein; Provisional
Probab=61.41 E-value=90 Score=42.67 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=33.0
Q ss_pred CCCEEEEEeCC------CcEEEEECCC-CeE--EEEEecCCcEEEEEecCCcEEEEEeCCC--eEEEEEe
Q 000085 2131 DLGVVVSCSDS------SDLLLHSIRR-GRL--IRRLVGVDAHAVSLSSEGVIMTWNKLQH--TLSSFTL 2189 (2342)
Q Consensus 2131 Dg~lLaSGS~D------GtIrIWDLrT-Gkl--IrsL~gh~vssLSfSpDG~IlVwdssdG--sI~I~dl 2189 (2342)
++.+.+.|+.+ ..+..||..+ .+- +..+.......-+..-+|++.+.+..++ .+..|+.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCc
Confidence 46666667654 2467899887 443 2333322222233344788888887666 4445554
No 428
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=60.59 E-value=2.2e+02 Score=36.18 Aligned_cols=69 Identities=9% Similarity=0.060 Sum_probs=39.8
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEe
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWR 2066 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWD 2066 (2342)
.++..+..++||++++++...+...-||.-...-...-..-...|..+.|+|++...+.+ +.|.|+.=+
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 445557789999999998766666677743221112222245789999999997765544 888888776
No 429
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=60.28 E-value=1.5e+02 Score=36.13 Aligned_cols=47 Identities=4% Similarity=0.087 Sum_probs=37.8
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--CcEEEEEecC
Q 000085 2125 CCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV--DAHAVSLSSE 2171 (2342)
Q Consensus 2125 ~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh--~vssLSfSpD 2171 (2342)
.+++..+|.+.+++-..|+|...|..+|+.+..+.-. .++++||.-.
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 3455678999999999999999999999999988754 4677777543
No 430
>PHA02790 Kelch-like protein; Provisional
Probab=60.24 E-value=2.4e+02 Score=37.90 Aligned_cols=57 Identities=5% Similarity=-0.138 Sum_probs=30.9
Q ss_pred CCCEEEEEeCCC---cEEEEECCCCeEEEE--EecCCcEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2131 DLGVVVSCSDSS---DLLLHSIRRGRLIRR--LVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2131 Dg~lLaSGS~DG---tIrIWDLrTGklIrs--L~gh~vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
+|...+.||.++ ++..||.++.+-... +........+..-+|.+.+.+ |....|+..
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCC
Confidence 566666776553 467788876654321 111111223345677887776 345566654
No 431
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=59.94 E-value=3.3e+02 Score=34.72 Aligned_cols=102 Identities=16% Similarity=0.221 Sum_probs=65.2
Q ss_pred CCeEEEEEecCCCEEEEEeCCCc------EEEEECCC--C--eEEE-----EEecC----------CcEEEEEecCCcEE
Q 000085 2121 REILCCCVSSDLGVVVSCSDSSD------LLLHSIRR--G--RLIR-----RLVGV----------DAHAVSLSSEGVIM 2175 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS~DGt------IrIWDLrT--G--klIr-----sL~gh----------~vssLSfSpDG~Il 2175 (2342)
+.+..+.+.+++..+++.+.+|. ++..++.. + ..+. .+... ....+++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45677778766666777777777 66555543 1 0111 11111 23456778888888
Q ss_pred EEEeCC------CeEEEEEeCCceeeeecC--------------CCCCCeEEEEEccCCCEEEEEeC
Q 000085 2176 TWNKLQ------HTLSSFTLNGVLVARAKL--------------PLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2176 Vwdssd------GsI~I~dlnG~~L~s~~~--------------~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
+.+-.. ..|..|+.+|..+..... ..+..+-+|+++|||+.|++...
T Consensus 100 is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 887766 778888877765443311 14567899999999998777753
No 432
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=59.85 E-value=2.1e+02 Score=37.94 Aligned_cols=158 Identities=13% Similarity=0.043 Sum_probs=71.5
Q ss_pred EEEcCCCCEEEEEEc--------------------CCcEEEEecCCcccceecccCCC--CeEEEEecC--CCCE-EEEE
Q 000085 2002 VSITHDKEIITGGHV--------------------DGSIKLLTSDGAKTLETASGHCA--PVTCLALSS--DSNF-LVTG 2056 (2342)
Q Consensus 2002 VafSpDGklLASGS~--------------------DGsIrVWDl~tgkll~tL~GHt~--~VtcLAfSP--DG~~-LaSG 2056 (2342)
+.+.|..+++++..| ..++.+||+.+.+.++++.--.+ .+.-|.|.. +..+ ++.+
T Consensus 186 fw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~ 265 (461)
T PF05694_consen 186 FWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGC 265 (461)
T ss_dssp EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEE
T ss_pred eEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEE
Confidence 566777777776553 56899999999999998864332 344566654 4444 4444
Q ss_pred eCCCceEEEec-cCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEE
Q 000085 2057 SQDTTILLWRI-HRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVV 2135 (2342)
Q Consensus 2057 S~DGTVrVWDl-~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL 2135 (2342)
....+|..|-- ..+.-..+. ++.........|.....+..+..-..-|+.+.+|.|.++|
T Consensus 266 aLss~i~~~~k~~~g~W~a~k-------------------Vi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfL 326 (461)
T PF05694_consen 266 ALSSSIWRFYKDDDGEWAAEK-------------------VIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFL 326 (461)
T ss_dssp E--EEEEEEEE-ETTEEEEEE-------------------EEEE--EE--SS---GGGGGG-EE------EEE-TTS-EE
T ss_pred eccceEEEEEEcCCCCeeeeE-------------------EEECCCcccCcccccccccccccCCCceEeEEEccCCCEE
Confidence 44444444433 222110000 0000000001121112222222234568999999999988
Q ss_pred EEEe-CCCcEEEEECCCC---eEEEEEecC------------------CcEEEEEecCCcEEEEE
Q 000085 2136 VSCS-DSSDLLLHSIRRG---RLIRRLVGV------------------DAHAVSLSSEGVIMTWN 2178 (2342)
Q Consensus 2136 aSGS-~DGtIrIWDLrTG---klIrsL~gh------------------~vssLSfSpDG~IlVwd 2178 (2342)
..++ .+|.|+.||+..- +++.++.-. +...+..|-||+-+.+.
T Consensus 327 Yvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 327 YVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp EEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred EEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 6555 6899999999753 344433210 13567888898866554
No 433
>PRK10115 protease 2; Provisional
Probab=59.76 E-value=1.8e+02 Score=40.85 Aligned_cols=102 Identities=9% Similarity=0.091 Sum_probs=58.0
Q ss_pred CeEEEEEecCCCEEEEEeC-----CCcEEEEECCCCeEEEE-EecCCcEEEEEecCCcEEEEEeCC------CeEEEEEe
Q 000085 2122 EILCCCVSSDLGVVVSCSD-----SSDLLLHSIRRGRLIRR-LVGVDAHAVSLSSEGVIMTWNKLQ------HTLSSFTL 2189 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS~-----DGtIrIWDLrTGklIrs-L~gh~vssLSfSpDG~IlVwdssd------GsI~I~dl 2189 (2342)
.+..+.|+||+++|+-+.. ...|++-|+.+|..+.. +.+. ...++|++||..+++...+ ..+..+++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 4567788999998764432 23688999988864322 2222 2458999999877765432 34556666
Q ss_pred CCce--eeeecCCCCCCeE-EEEEccCCCEEEEEeCCC
Q 000085 2190 NGVL--VARAKLPLSGSIG-CMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2190 nG~~--L~s~~~~Hs~~It-sLafSPDGk~LaSGS~DG 2224 (2342)
.... -............ .+..+.|+++++..+.++
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~ 244 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA 244 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC
Confidence 4321 1111111122233 334455888887665444
No 434
>PRK13684 Ycf48-like protein; Provisional
Probab=58.89 E-value=3.3e+02 Score=34.87 Aligned_cols=64 Identities=9% Similarity=0.125 Sum_probs=38.0
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec-ccCCCCeEEEEecCCCCEEEEEeCCCceE
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA-SGHCAPVTCLALSSDSNFLVTGSQDTTIL 2063 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL-~GHt~~VtcLAfSPDG~~LaSGS~DGTVr 2063 (2342)
+...+.+.+++.++++|. .|.+..-.-+.++.-..+ .+-...++++.+.++++.++.| ..|.++
T Consensus 174 ~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~ 238 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIR 238 (334)
T ss_pred eEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEE
Confidence 345688899988777764 554443211222222222 2234578999999998876665 456664
No 435
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.87 E-value=1.3e+02 Score=44.06 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=24.2
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCC
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDG 2027 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~t 2027 (2342)
..++|+|.-.++|.|+.+|.|++|-...
T Consensus 39 ~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 39 SALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred cceeeccccceEEEEEecccEEEecccc
Confidence 3489999999999999999999997543
No 436
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.60 E-value=38 Score=40.69 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=52.8
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCccccee-------cc-------cCCCCeEEEEecCCCCEEEEEeCCCceEEEec
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLET-------AS-------GHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~t-------L~-------GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl 2067 (2342)
+.+..+++++.+-+.+|.+++||+.+++.+.. +. .....|+.+.++.+|.-|++-+ +|....|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 45667888899999999999999998765421 22 3567899999999998888776 477888887
Q ss_pred cCC
Q 000085 2068 HRA 2070 (2342)
Q Consensus 2068 ~tg 2070 (2342)
.-+
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 653
No 437
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=57.74 E-value=2e+02 Score=39.94 Aligned_cols=60 Identities=17% Similarity=0.096 Sum_probs=45.1
Q ss_pred cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee-cCCCCCCeEEEEEc--cCCCEEEEEeC
Q 000085 2163 AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA-KLPLSGSIGCMEIS--LDGHSALIGVN 2222 (2342)
Q Consensus 2163 vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~-~~~Hs~~ItsLafS--PDGk~LaSGS~ 2222 (2342)
...+..|.-+++.+.+.....+.+|+..+..+... .+...+.|.++.|. |||+.+++-|.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf 94 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF 94 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc
Confidence 56777888888888888888899999986554432 22457899999885 68888877653
No 438
>PHA03098 kelch-like protein; Provisional
Probab=56.98 E-value=2.5e+02 Score=37.92 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=33.0
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEE--EecCCcEEEEEecCCcEEEEEeCC------CeEEEEEeCC
Q 000085 2131 DLGVVVSCSDS-----SDLLLHSIRRGRLIRR--LVGVDAHAVSLSSEGVIMTWNKLQ------HTLSSFTLNG 2191 (2342)
Q Consensus 2131 Dg~lLaSGS~D-----GtIrIWDLrTGklIrs--L~gh~vssLSfSpDG~IlVwdssd------GsI~I~dlnG 2191 (2342)
++.+.+.||.+ ..+..||..+++-... +........+..-+|.++++++.. ..+..|+...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCC
Confidence 46666667655 3467788776543221 111111222334577888887632 3467777653
No 439
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=54.86 E-value=1.8e+02 Score=39.48 Aligned_cols=101 Identities=12% Similarity=0.161 Sum_probs=58.4
Q ss_pred CCCeEEEEEecC----CCEEEEEeCCCcEEEEECC-----CCeEEEEEec--CC-----cEEEEEecCCcEEEEEeCCCe
Q 000085 2120 HREILCCCVSSD----LGVVVSCSDSSDLLLHSIR-----RGRLIRRLVG--VD-----AHAVSLSSEGVIMTWNKLQHT 2183 (2342)
Q Consensus 2120 s~~Vt~VafSPD----g~lLaSGS~DGtIrIWDLr-----TGklIrsL~g--h~-----vssLSfSpDG~IlVwdssdGs 2183 (2342)
-..|..+.|.|- ...++..-....|.||.+. +++.+.+-.. .+ ..-+.|+|...++..=.....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 345788888874 3345556666789999875 2222222111 01 234567777776654333322
Q ss_pred EEEEEeC--CceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2184 LSSFTLN--GVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2184 I~I~dln--G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
-.++++. +..+.. .....+.|.|.+|.+||+.|+++-
T Consensus 136 SV~~sV~~d~srVka-Di~~~G~IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKA-DIKTSGLIHCACWTKDGQRLVVAV 174 (671)
T ss_pred eEeeeeeeCCceEEE-eccCCceEEEEEecCcCCEEEEEe
Confidence 2233332 322221 223578999999999999998874
No 440
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=52.97 E-value=5.6e+02 Score=32.09 Aligned_cols=175 Identities=11% Similarity=0.072 Sum_probs=86.3
Q ss_pred EEEcCCCCEEEEEEcCC--cEEEEecCCcccceecccCC-CCeEEEEecCCCCEEEE-EeCCCceEEEeccCCccccccc
Q 000085 2002 VSITHDKEIITGGHVDG--SIKLLTSDGAKTLETASGHC-APVTCLALSSDSNFLVT-GSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2002 VafSpDGklLASGS~DG--sIrVWDl~tgkll~tL~GHt-~~VtcLAfSPDG~~LaS-GS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
+.|..+|.++-+.+.-| .|+.+|+.+|+..+...-.. --=-.++.. +..|+- .=.+++..+||..+.+.+.+
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~-- 125 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGT-- 125 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEE--
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEE--
Confidence 66777788777766665 69999999998765432111 001122222 122222 23467788888876432211
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
+. ..+.=+.++ .|++.++.......++++|..+.+..++
T Consensus 126 --------------------------------------~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~ 164 (264)
T PF05096_consen 126 --------------------------------------FP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT 164 (264)
T ss_dssp --------------------------------------EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE
T ss_pred --------------------------------------Ee-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEE
Confidence 11 112335555 4566676666677899999988877776
Q ss_pred EecCC-------cEEEEEe---------cCCcEEEEEeCCCeEEE-EEeCCceeee----ecCCCCCCeEEEEEccCCCE
Q 000085 2158 LVGVD-------AHAVSLS---------SEGVIMTWNKLQHTLSS-FTLNGVLVAR----AKLPLSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2158 L~gh~-------vssLSfS---------pDG~IlVwdssdGsI~I-~dlnG~~L~s----~~~~Hs~~ItsLafSPDGk~ 2216 (2342)
+.-.. ..-+-+- ....++..+..+|.|.- +++.+-.... ...+...-.+.+++.|.+..
T Consensus 165 i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 165 IQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp EE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred EEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 64321 1112221 12334445555555432 3332211000 00112456899999887665
Q ss_pred EEEEe
Q 000085 2217 ALIGV 2221 (2342)
Q Consensus 2217 LaSGS 2221 (2342)
+...+
T Consensus 245 l~vTG 249 (264)
T PF05096_consen 245 LFVTG 249 (264)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55443
No 441
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=50.75 E-value=6e+02 Score=33.57 Aligned_cols=98 Identities=12% Similarity=-0.022 Sum_probs=53.2
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCC--eEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCc-----eee
Q 000085 2123 ILCCCVSSDLGVVVSCSDSSDLLLHSIRRG--RLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV-----LVA 2195 (2342)
Q Consensus 2123 Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG--klIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~-----~L~ 2195 (2342)
...+..++++.+++.+.....++-||--.. +.+..-.......+.+.++|.+++.+. .|.+..-.-.|. ...
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~-~G~l~~S~d~G~~~~~~~f~ 319 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTR-GGGLYVSKGTGLTEEDFDFE 319 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeC-CceEEEecCCCCccccccee
Confidence 455667788877766655433333442211 112111122356778889999887663 454433333332 112
Q ss_pred eecCC-CCCCeEEEEEccCCCEEEEEe
Q 000085 2196 RAKLP-LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2196 s~~~~-Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
..... -...+.++.|.+++..+++|.
T Consensus 320 ~~~~~~~~~~l~~v~~~~d~~~~a~G~ 346 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSKKEAWAAGG 346 (398)
T ss_pred ecccCCCCcceEEEEEcCCCcEEEEEC
Confidence 11111 123589999999999888774
No 442
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=50.73 E-value=40 Score=30.65 Aligned_cols=32 Identities=13% Similarity=0.320 Sum_probs=26.2
Q ss_pred CCeEEEEEecCC---CEEEEEeCCCcEEEEECCCC
Q 000085 2121 REILCCCVSSDL---GVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2121 ~~Vt~VafSPDg---~lLaSGS~DGtIrIWDLrTG 2152 (2342)
+.|.++.|+|+. ++++.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468899999753 58888888899999999864
No 443
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=50.20 E-value=6.1e+02 Score=31.76 Aligned_cols=182 Identities=10% Similarity=0.045 Sum_probs=97.5
Q ss_pred CeEEEEecCCCCEEEEEeCCC--ceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEec
Q 000085 2040 PVTCLALSSDSNFLVTGSQDT--TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLR 2117 (2342)
Q Consensus 2040 ~VtcLAfSPDG~~LaSGS~DG--TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~ 2117 (2342)
-...+.|..+|.++-|.+.-| .|+.+|+.+++....... +...++
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-------------~~~~Fg-------------------- 92 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-------------PPRYFG-------------------- 92 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--------------TTT--E--------------------
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-------------Cccccc--------------------
Confidence 355788877888888888776 788899888653322100 000000
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeCCc-eee
Q 000085 2118 GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV-LVA 2195 (2342)
Q Consensus 2118 GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dlnG~-~L~ 2195 (2342)
-.+++. +.....-.=.++...+||..+.+.+.++.-. +..-++ .||..++.+.-+..++.++.... ...
T Consensus 93 ------EGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~ 163 (264)
T PF05096_consen 93 ------EGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVR 163 (264)
T ss_dssp ------EEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEE
T ss_pred ------eeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEE
Confidence 111111 1222333346789999999999999888654 456666 55555554444556666665432 111
Q ss_pred eecCC-C---CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEE
Q 000085 2196 RAKLP-L---SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLD 2271 (2342)
Q Consensus 2196 s~~~~-H---s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWD 2271 (2342)
..... . -..++-+.|. +|...+ ++|. ...|...|
T Consensus 164 ~i~V~~~g~pv~~LNELE~i-~G~IyA--------------NVW~---------------------------td~I~~Id 201 (264)
T PF05096_consen 164 TIQVTDNGRPVSNLNELEYI-NGKIYA--------------NVWQ---------------------------TDRIVRID 201 (264)
T ss_dssp EEE-EETTEE---EEEEEEE-TTEEEE--------------EETT---------------------------SSEEEEEE
T ss_pred EEEEEECCEECCCcEeEEEE-cCEEEE--------------EeCC---------------------------CCeEEEEe
Confidence 11111 1 1234555554 333222 2232 34688889
Q ss_pred CCCCeEEEEEecC-----------C---CCCeEEEEEecCCCEEEEEe
Q 000085 2272 LHTLKVFHVLKLG-----------E---GQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2272 L~Tgk~L~tL~lg-----------H---s~~ItsLafSPDG~~LaSGS 2305 (2342)
..+|+++..+... + ..-.+.+++.|+...|++.|
T Consensus 202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 9999988877421 1 34589999998776665554
No 444
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.83 E-value=1.6e+02 Score=42.17 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=41.5
Q ss_pred EEcCCCCEEEEEEcCCcEEEEecCCccc---cee------cc--cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 2003 SITHDKEIITGGHVDGSIKLLTSDGAKT---LET------AS--GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 2003 afSpDGklLASGS~DGsIrVWDl~tgkl---l~t------L~--GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
++..-|+.+..|+.||.+.+|.+..... ... +. -+..+|+.+...+.-.++.. ..|+.|.+.++.+-
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPEL 98 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCcc
Confidence 4556688899999999999998764311 111 11 13456766666654444433 34667777777664
No 445
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=48.97 E-value=6.6e+02 Score=31.76 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=41.9
Q ss_pred cCCCCEEEEEEcCCcEEEEecCC--cccceecccCCCCeEEEEecCCCCEEEEEe-CCCceEEEeccC
Q 000085 2005 THDKEIITGGHVDGSIKLLTSDG--AKTLETASGHCAPVTCLALSSDSNFLVTGS-QDTTILLWRIHR 2069 (2342)
Q Consensus 2005 SpDGklLASGS~DGsIrVWDl~t--gkll~tL~GHt~~VtcLAfSPDG~~LaSGS-~DGTVrVWDl~t 2069 (2342)
..++++|+.|+.+|...+. +.. ++..+.+ +...|+++...+..+.|++-+ ....++++++..
T Consensus 10 ~~~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~ 74 (302)
T smart00036 10 TCDGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSA 74 (302)
T ss_pred ccCCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHH
Confidence 3444689999988855544 544 2333332 466899999999888777655 334499999854
No 446
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.91 E-value=1.8e+02 Score=42.11 Aligned_cols=55 Identities=5% Similarity=-0.106 Sum_probs=39.1
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC------CcEEEEEecCCcEE
Q 000085 2120 HREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV------DAHAVSLSSEGVIM 2175 (2342)
Q Consensus 2120 s~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh------~vssLSfSpDG~Il 2175 (2342)
...++|++|+|.|..++.|-..|++.-|-. +++..+.+.+. .+.+|+|-....++
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEE
Confidence 456899999999999999999999988875 45555555442 24566665444443
No 447
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=48.57 E-value=1.4e+02 Score=39.48 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=76.5
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcE-------EEEEeCCCeEEEEEeC--CceeeeecC---CCCC
Q 000085 2136 VSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVI-------MTWNKLQHTLSSFTLN--GVLVARAKL---PLSG 2203 (2342)
Q Consensus 2136 aSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~I-------lVwdssdGsI~I~dln--G~~L~s~~~---~Hs~ 2203 (2342)
..|+....++-.|+..|+.+..+..+....+.+.|+..+ -+.+..+..|...+.. |..+..... ....
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn 563 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKN 563 (776)
T ss_pred ecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccc
Confidence 355666778888999999998888777667788776532 1233333333222221 211111000 0111
Q ss_pred CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec
Q 000085 2204 SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL 2283 (2342)
Q Consensus 2204 ~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l 2283 (2342)
...|..-..+ .|+++ ++.-|-|++||--....-..++
T Consensus 564 ~Fss~~tTes-GyIa~-----------------------------------------as~kGDirLyDRig~rAKtalP- 600 (776)
T COG5167 564 KFSSGMTTES-GYIAA-----------------------------------------ASRKGDIRLYDRIGKRAKTALP- 600 (776)
T ss_pred cccccccccC-ceEEE-----------------------------------------ecCCCceeeehhhcchhhhcCc-
Confidence 1111111111 12222 2346779999865444333444
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2284 GEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2284 gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+.+..|..+..+.+|.+|++.+. ..|.+-|++
T Consensus 601 ~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 601 GLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 77889999999999998886664 456666644
No 448
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=48.45 E-value=7.1e+02 Score=33.54 Aligned_cols=31 Identities=19% Similarity=0.106 Sum_probs=24.5
Q ss_pred CCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 2039 APVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2039 ~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
..-+.|+|.|||+.|++--..|.|++++..+
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~ 60 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPET 60 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCC
Confidence 3467899999998888766579999887654
No 449
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=48.42 E-value=64 Score=43.72 Aligned_cols=34 Identities=9% Similarity=0.009 Sum_probs=27.7
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2120 HREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2120 s~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
...++++.-+|.+.-+++++.||.|++|+.....
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 3456777778999999999999999999975443
No 450
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=47.69 E-value=20 Score=49.43 Aligned_cols=103 Identities=14% Similarity=0.064 Sum_probs=60.1
Q ss_pred CcEEEEecC--Ccccceeccc-----CCCCeEEEEecC---CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccc
Q 000085 2018 GSIKLLTSD--GAKTLETASG-----HCAPVTCLALSS---DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTP 2087 (2342)
Q Consensus 2018 GsIrVWDl~--tgkll~tL~G-----Ht~~VtcLAfSP---DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~sv 2087 (2342)
|...||+++ .|+....+.- -...+.-+.|.| +.-++..+-.+++|++-.+++... .....|...+..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccH
Confidence 567888876 3444332221 122334444544 567788888899999887776422 2222244444333
Q ss_pred cccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2088 GNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2088 s~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
++-..|. ..+. .+||||..+++++.||.++.|.+.
T Consensus 231 a~~~~g~-------------------~~l~---------~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 231 AFFAEGV-------------------LKLA---------SLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred HHHhhch-------------------hhhe---------eeCCCCcEEEEeecCCccceeeee
Confidence 3321111 1111 178999999999999999988764
No 451
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.66 E-value=85 Score=37.80 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=50.2
Q ss_pred ecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEE
Q 000085 2046 LSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILC 2125 (2342)
Q Consensus 2046 fSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~ 2125 (2342)
+..++++|+.-+.+|.+++||+.+.+...... .+..+- . . .. ..-......|..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-----Si~pll-~--~-----------------~~-~~~~~~~~~i~~ 71 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV-----SIAPLL-N--S-----------------SP-VSDKSSSPNITS 71 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc-----cHHHHh-c--c-----------------cc-cccCCCCCcEEE
Confidence 34468899999999999999999875433210 000000 0 0 00 000045677888
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2126 CCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2126 VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
+.++.+|.-+++-+ +|..+.||..=+
T Consensus 72 ~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 72 CSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred EEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 99998888777765 478898986544
No 452
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=45.28 E-value=1.1e+03 Score=33.74 Aligned_cols=29 Identities=3% Similarity=-0.120 Sum_probs=25.1
Q ss_pred CCeEEEEEecC-CCEEEEEeCCCcEEEEEC
Q 000085 2121 REILCCCVSSD-LGVVVSCSDSSDLLLHSI 2149 (2342)
Q Consensus 2121 ~~Vt~VafSPD-g~lLaSGS~DGtIrIWDL 2149 (2342)
.+...|+|+|. ...+|.....|...|||+
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEe
Confidence 46678999984 568999999999999999
No 453
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=44.67 E-value=9.4e+02 Score=35.97 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=14.2
Q ss_pred cCCCCCeEEEEEecCCCEEEEE
Q 000085 2117 RGHHREILCCCVSSDLGVVVSC 2138 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSG 2138 (2342)
..|-..+.++|++|||...+.-
T Consensus 658 ~A~lnsp~alaVsPdg~v~IAD 679 (1899)
T KOG4659|consen 658 QAKLNSPYALAVSPDGDVIIAD 679 (1899)
T ss_pred ccccCCcceEEECCCCcEEEec
Confidence 3455667777888877655543
No 454
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=44.11 E-value=1e+03 Score=34.97 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=41.6
Q ss_pred EEEEEEcCCcEEEEecC-Ccccceeccc--CCCCeEEEEecCCC------CEEEEEeCCCceEEEeccCCccccc
Q 000085 2010 IITGGHVDGSIKLLTSD-GAKTLETASG--HCAPVTCLALSSDS------NFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~-tgkll~tL~G--Ht~~VtcLAfSPDG------~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
.++.+-..|.+.-+..+ +|++...... -...|.|+++.++. ++++.|+.|+++++..+....++..
T Consensus 551 qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ 625 (1205)
T KOG1898|consen 551 QIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQP 625 (1205)
T ss_pred EEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEE
Confidence 44444445555555443 3333322222 24679999998864 6799999999999999886544433
No 455
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=43.56 E-value=2.9e+02 Score=36.16 Aligned_cols=169 Identities=15% Similarity=0.066 Sum_probs=79.2
Q ss_pred EEEecCCCEEEEEeC-CC--cEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC
Q 000085 2126 CCVSSDLGVVVSCSD-SS--DLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP 2200 (2342)
Q Consensus 2126 VafSPDg~lLaSGS~-DG--tIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~ 2200 (2342)
=+|.+||+.++.++. || .+++.|+.+++..+--.+.. .....++++++.++|-.....+...++..........-
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 357888977665554 44 67778898988777655432 22356678888877755556777777766443332222
Q ss_pred CCCCeEEEEE--ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEE
Q 000085 2201 LSGSIGCMEI--SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVF 2278 (2342)
Q Consensus 2201 Hs~~ItsLaf--SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L 2278 (2342)
....+-...| +.|+..++..-.. ..-|.... ....|. ....+-....|.-.|+.+|+..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~--------~~d~~~l~---~~~~f~--------e~~~a~p~~~i~~idl~tG~~~ 181 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEIS--------REDWKPLT---KWKGFR--------EFYEARPHCRIFTIDLKTGERK 181 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEE--------GGG--------SHHHHH--------HHHHC---EEEEEEETTT--EE
T ss_pred CcccccccceeeCCCccEEEEEEEe--------ehhccCcc---ccHHHH--------HHHhhCCCceEEEEECCCCcee
Confidence 3444433444 3456655422100 00000000 000000 0000112456778899999865
Q ss_pred EEEecCCCCCeEEEEEecCCCEEEEEeCCC----c-EEEEeC
Q 000085 2279 HVLKLGEGQDITALALNKDNTNLLVSTADK----Q-LIVFTD 2315 (2342)
Q Consensus 2279 ~tL~lgHs~~ItsLafSPDG~~LaSGSsDG----s-IrVWDi 2315 (2342)
..+. ....+..+.|||....+++=+..| . -+||-+
T Consensus 182 ~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i 221 (386)
T PF14583_consen 182 VVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTI 221 (386)
T ss_dssp EEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEE
T ss_pred EEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEE
Confidence 5554 456788999999776666654333 2 366653
No 456
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=37.86 E-value=7.6e+02 Score=34.42 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=44.0
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
+++.-+|.|+-++.|+.||+|++|+....+.-.... -..+-..+.|.. .-|++...|..+.-|.-+.
T Consensus 18 ~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tn--hgl~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 18 TAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTN--HGLVTATSDRRALAWKEDG 84 (1636)
T ss_pred eeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeec--cceEEEeccchhheeeccC
Confidence 346668999999999999999999987644322221 112233445543 3467777788888886543
No 457
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=37.77 E-value=63 Score=43.79 Aligned_cols=71 Identities=25% Similarity=0.337 Sum_probs=43.6
Q ss_pred CCCCEEEEEEcCCcEEEEecCC----cccc-----------eeccc-----------CCCCeEEEEecC----CCCEEEE
Q 000085 2006 HDKEIITGGHVDGSIKLLTSDG----AKTL-----------ETASG-----------HCAPVTCLALSS----DSNFLVT 2055 (2342)
Q Consensus 2006 pDGklLASGS~DGsIrVWDl~t----gkll-----------~tL~G-----------Ht~~VtcLAfSP----DG~~LaS 2055 (2342)
++...++.+..||.+....... +... +.+.+ -...+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3556777777888887776553 1110 11111 124466667766 6789999
Q ss_pred EeCCCceEEEeccCCcccccc
Q 000085 2056 GSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2056 GS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
.+.|+++|+||+.++.++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999998875544
No 458
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=35.24 E-value=1.2e+02 Score=34.92 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=25.5
Q ss_pred CeEEEEecCCC------CEEEEEeCCCceEEEeccC
Q 000085 2040 PVTCLALSSDS------NFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2040 ~VtcLAfSPDG------~~LaSGS~DGTVrVWDl~t 2069 (2342)
.|..++|||.| .+|+..+.++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999954 5788899999999998764
No 459
>PRK13615 lipoprotein LpqB; Provisional
Probab=35.20 E-value=7.5e+02 Score=34.16 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=59.0
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCe-EEEEEe--CCceeeeecCC
Q 000085 2124 LCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHT-LSSFTL--NGVLVARAKLP 2200 (2342)
Q Consensus 2124 t~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGs-I~I~dl--nG~~L~s~~~~ 2200 (2342)
.+++.++++..++....++.+.++... +.....+.+.....-+|..+| .+|...++. .++... .|.... ....
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~~~Lt~PS~d~~g--~vWtv~~g~~~~l~~~~~~G~~~~-v~v~ 412 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDTRPGLVAPSLDAQG--YVWSTPASDPRGLVAWGPDGVGHP-VAVS 412 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-CcceeeccCCccccCcCcCCC--CEEEEeCCCceEEEEecCCCceEE-eecc
Confidence 688999999999888888888887654 233333444445556777777 566644432 222222 233321 1112
Q ss_pred --CCCCeEEEEEccCCCEEEEEe
Q 000085 2201 --LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2201 --Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
-...|+.+.+|+||-.++.-.
T Consensus 413 ~~~~~~I~~lrvSrDG~R~Avi~ 435 (557)
T PRK13615 413 WTATGRVVSLEVARDGARVLVQL 435 (557)
T ss_pred ccCCCeeEEEEeCCCccEEEEEE
Confidence 346899999999999887654
No 460
>PRK13613 lipoprotein LpqB; Provisional
Probab=34.42 E-value=7.4e+02 Score=34.54 Aligned_cols=102 Identities=19% Similarity=0.173 Sum_probs=59.2
Q ss_pred CCCC-CeEEEEEecCCCEEEEEeCCC-cEEEEECCCCeE-----EEEEecCCcEEEEEecCCcEEEEEeCC---Ce--EE
Q 000085 2118 GHHR-EILCCCVSSDLGVVVSCSDSS-DLLLHSIRRGRL-----IRRLVGVDAHAVSLSSEGVIMTWNKLQ---HT--LS 2185 (2342)
Q Consensus 2118 GHs~-~Vt~VafSPDg~lLaSGS~DG-tIrIWDLrTGkl-----IrsL~gh~vssLSfSpDG~IlVwdssd---Gs--I~ 2185 (2342)
++.. .+.+.+.++++..++..+.|+ .+++..+..+.. ...+.+.....-+|..+|. +|.... +. +.
T Consensus 359 g~~~~~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g~--vWtvd~~~~~~~vl~ 436 (599)
T PRK13613 359 GSGRVPLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRGD--LWVVDRDPADPRLLW 436 (599)
T ss_pred CCCCCCccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCCC--EEEecCCCCCceEEE
Confidence 3433 678899999998888777666 455555433322 1223444445556777774 454321 22 44
Q ss_pred EEEeCCceeeeecCCCCC-CeEEEEEccCCCEEEEEe
Q 000085 2186 SFTLNGVLVARAKLPLSG-SIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2186 I~dlnG~~L~s~~~~Hs~-~ItsLafSPDGk~LaSGS 2221 (2342)
++.-.|...........+ .|..+.+|+||-.++.-.
T Consensus 437 v~~~~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~ 473 (599)
T PRK13613 437 LLQGDGEPVEVRTPELDGHRVVAVRVARDGVRVALIV 473 (599)
T ss_pred EEcCCCcEEEeeccccCCCEeEEEEECCCccEEEEEE
Confidence 444444432211111334 899999999999887654
No 461
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=33.74 E-value=4.9e+02 Score=33.26 Aligned_cols=99 Identities=13% Similarity=0.138 Sum_probs=55.4
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE---EEEEec------CCcEEEEEecC----CcEEEEEeCC-------
Q 000085 2122 EILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL---IRRLVG------VDAHAVSLSSE----GVIMTWNKLQ------- 2181 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl---IrsL~g------h~vssLSfSpD----G~IlVwdssd------- 2181 (2342)
..+.++|.|||+++++ ...|.|++++ ..+.. +..+.. .....++++|+ +.+.++....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4578999999987665 6699999999 55554 333311 12467888884 6666655422
Q ss_pred -CeEEEEEeCCc--ee------e-eecC--CCCCCeEEEEEccCCCEEEEEeC
Q 000085 2182 -HTLSSFTLNGV--LV------A-RAKL--PLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2182 -GsI~I~dlnG~--~L------~-s~~~--~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
..|..|..... .+ . .... .....-..|.|.|||.+.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23555554322 11 1 1111 12334567999999976666653
No 462
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=33.05 E-value=93 Score=28.42 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=26.5
Q ss_pred CCeEEEEecCCC---CEEEEEeCCCceEEEeccCC
Q 000085 2039 APVTCLALSSDS---NFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 2039 ~~VtcLAfSPDG---~~LaSGS~DGTVrVWDl~tg 2070 (2342)
+.|.++.|||+. .+|+-.-.-+.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 48888888899999999863
No 463
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=32.46 E-value=1.3e+03 Score=30.51 Aligned_cols=141 Identities=9% Similarity=-0.022 Sum_probs=67.6
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCccc--ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc--cc-
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKT--LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR--TG- 2076 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkl--l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~--t~- 2076 (2342)
+..++||.+++.|.....++-||- |.. ...-..-...++.+.+.+++..++.+ .+|.+. |....+.... .+
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~ 319 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFE 319 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccccee
Confidence 556788888888864443444442 222 11112234568899999998877665 556543 3333332110 11
Q ss_pred --c-cCCCCCCccccccCCCCCceeecCCCccccccC-CceEEe---cCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2077 --T-IEPSSGMGTPGNSIGSSTPANASADKSRRRRIE-GPIHVL---RGHHREILCCCVSSDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2077 --~-~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~-~~l~~L---~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIW 2147 (2342)
. ......+..+.+..++..++++....+....-. +.-... ..-....+.+.|.++++.+++ +.+|.|.-|
T Consensus 320 ~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred ecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 0 011123455556666665555544322221111 111111 112345667777665554443 445655443
No 464
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=31.23 E-value=1.2e+03 Score=29.71 Aligned_cols=104 Identities=13% Similarity=-0.045 Sum_probs=56.1
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--CeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeC--Cc
Q 000085 2117 RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR--GRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN--GV 2192 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT--GklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dln--G~ 2192 (2342)
..-.+.+..+..++||.+++.++......-||--. -+...+.....+..+.|++++.+.+.. +.|.++.-+.. +.
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 34457788888899999888887766666787542 233333334557899999999887755 67777665521 11
Q ss_pred eeeeecCC---CCCCeEEEEEccCCCEEEEEe
Q 000085 2193 LVARAKLP---LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2193 ~L~s~~~~---Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.......+ ..-.+..++|.+++...++|+
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg 251 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG 251 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEES
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeC
Confidence 11111111 233589999999999888875
No 465
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.66 E-value=4.5e+02 Score=35.43 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=26.2
Q ss_pred CCeEEEEEecCC---CEEEEEeCCCcEEEEeCCCC
Q 000085 2287 QDITALALNKDN---TNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2287 ~~ItsLafSPDG---~~LaSGSsDGsIrVWDi~sL 2318 (2342)
-.+..++|+|+. .+|+.-+.|++|++|+....
T Consensus 166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred eeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 357788999976 78999999999999995443
No 466
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=29.64 E-value=50 Score=43.37 Aligned_cols=94 Identities=13% Similarity=0.217 Sum_probs=64.8
Q ss_pred cCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeE
Q 000085 1963 PASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVT 2042 (2342)
Q Consensus 1963 sSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~Vt 2042 (2342)
+..-+++.+|+..+ .+.+.+. .++-.+...+.|++.+..++.|...|.++|++-.+.+.+-....|...++
T Consensus 93 Aek~~piylwd~n~-------eytqqLE--~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgt 163 (615)
T KOG2247|consen 93 AEKTGPIYLWDVNS-------EYTQQLE--SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGT 163 (615)
T ss_pred hhcCCCeeechhhh-------hhHHHHh--ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccccccee
Confidence 44455788998654 1111111 22333333478999999999999999999999887766665555999999
Q ss_pred EEEecCCCCEEEEEeCCCceEEEe
Q 000085 2043 CLALSSDSNFLVTGSQDTTILLWR 2066 (2342)
Q Consensus 2043 cLAfSPDG~~LaSGS~DGTVrVWD 2066 (2342)
+++|.+.+ +.+.++.|.++.+-.
T Consensus 164 q~av~lEd-~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 164 QIAVTLED-YVILCDCDNTLSVTT 186 (615)
T ss_pred EEEecccc-eeeecCcHHHHHHhh
Confidence 99999865 667777776655443
No 467
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=29.35 E-value=5.4e+02 Score=36.39 Aligned_cols=105 Identities=14% Similarity=0.105 Sum_probs=68.1
Q ss_pred CCCEEEEEEcCCcEEEEecCC-------c----c---------cceecccCCCCeEEEEec--CCCCEEEEEeCCCceEE
Q 000085 2007 DKEIITGGHVDGSIKLLTSDG-------A----K---------TLETASGHCAPVTCLALS--SDSNFLVTGSQDTTILL 2064 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~t-------g----k---------ll~tL~GHt~~VtcLAfS--PDG~~LaSGS~DGTVrV 2064 (2342)
+..+|+.+..||.|.+|.+++ . . +...+. -...+++++++ ...++||.++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 445899999999999997532 0 0 111111 23478999998 77788888888888888
Q ss_pred EeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC---C---EEEEE
Q 000085 2065 WRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL---G---VVVSC 2138 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg---~---lLaSG 2138 (2342)
|-+......... .+ -..|...|.||+|-++. . .|+++
T Consensus 192 Faf~l~~~r~~~----------------------------------~~---s~~~~hNIP~VSFl~~~~d~~G~v~v~a~ 234 (717)
T PF08728_consen 192 FAFALVDERFYH----------------------------------VP---SHQHSHNIPNVSFLDDDLDPNGHVKVVAT 234 (717)
T ss_pred EEEecccccccc----------------------------------cc---ccccccCCCeeEeecCCCCCccceEEEEE
Confidence 876542100000 00 01156678888887542 2 77888
Q ss_pred eCCCcEEEEEC
Q 000085 2139 SDSSDLLLHSI 2149 (2342)
Q Consensus 2139 S~DGtIrIWDL 2149 (2342)
+-.|.+.+|++
T Consensus 235 dI~G~v~~~~I 245 (717)
T PF08728_consen 235 DISGEVWTFKI 245 (717)
T ss_pred eccCcEEEEEE
Confidence 88999888877
No 468
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.17 E-value=2.6e+02 Score=41.23 Aligned_cols=137 Identities=7% Similarity=0.003 Sum_probs=84.2
Q ss_pred EcCCcEEEEecCCcccceecccCCCCeEEEEec--------CCCCEEEEEeCCCceEEEeccCCccccc--c------cc
Q 000085 2015 HVDGSIKLLTSDGAKTLETASGHCAPVTCLALS--------SDSNFLVTGSQDTTILLWRIHRAFTSRT--G------TI 2078 (2342)
Q Consensus 2015 S~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfS--------PDG~~LaSGS~DGTVrVWDl~tg~~i~t--~------~~ 2078 (2342)
+-|+.+.+|+++++...+.+.+-...|..|.+- |.=+++..-+.--.|.++-+.-...... . ..
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 458999999999988888887777777777653 2223333333333455554432211111 1 11
Q ss_pred CCCCCCccccccCCCCCceeecCCCccc--------cccCCc----------------eEEec-CCCCCeEEEEEecCCC
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRR--------RRIEGP----------------IHVLR-GHHREILCCCVSSDLG 2133 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~--------~~i~~~----------------l~~L~-GHs~~Vt~VafSPDg~ 2133 (2342)
.....+.++....+|+.+.+|..++... |...++ +..+. ++.++|..+.+.....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 2244556666666777776665553221 211100 22233 6788999999998889
Q ss_pred EEEEEeCCCcEEEEECCC
Q 000085 2134 VVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2134 lLaSGS~DGtIrIWDLrT 2151 (2342)
.+.+-+..|+|.+||+..
T Consensus 256 IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeeccCceEEEEEccC
Confidence 999999999999999976
No 469
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.68 E-value=7.8e+02 Score=29.96 Aligned_cols=20 Identities=5% Similarity=0.034 Sum_probs=15.4
Q ss_pred CCCCeEEEEEccCC-CEEEEE
Q 000085 2201 LSGSIGCMEISLDG-HSALIG 2220 (2342)
Q Consensus 2201 Hs~~ItsLafSPDG-k~LaSG 2220 (2342)
|.+-.+.+++.|++ +++++|
T Consensus 227 ~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 227 NDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccccccceeecCcCCeEEEec
Confidence 66788999999987 555655
No 470
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=28.49 E-value=2.9e+02 Score=29.61 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=44.6
Q ss_pred EEEEeeEEEEEeCCCCCCCCCCccccccccceEeeccceeEEee----ccccCcccEEEEEEeCCceEEEEcCChhhHHH
Q 000085 1494 FQVTTRRINFIVDNTESPEEGTSELRNQEKDRSWLMSSLHQIYS----RRYLLRRSALELFMVDRSNFFFDFGSTEGRRN 1569 (2342)
Q Consensus 1494 L~IT~~~LyF~vd~~~~~~~~~~~~~~~~k~~~~~~~~I~~i~~----Rr~~l~~~alEif~~~~~s~f~~F~~~~~~~~ 1569 (2342)
|.++.+.|+|.-+..... +....+.++++..|-. ++-.-+++++||++.+ ++|||...+.++++.
T Consensus 24 F~L~~~~L~y~K~~~~~~----------~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~-rt~~l~A~se~e~e~ 92 (101)
T cd01264 24 FTLSGAQLLFQKGKSKDD----------PDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD-KTYILKAKDEKNAEE 92 (101)
T ss_pred EEEeCCEEEEEeccCccC----------CCCceEEcccceEEeeccccccccccCcEEEEEcCC-ceEEEEeCCHHHHHH
Confidence 888889997664331110 0113455666665543 1212347899998766 789999999888887
Q ss_pred HHHHH
Q 000085 1570 AYRAI 1574 (2342)
Q Consensus 1570 ~~~~i 1574 (2342)
=++.|
T Consensus 93 WI~~i 97 (101)
T cd01264 93 WLQCL 97 (101)
T ss_pred HHHHH
Confidence 66655
No 471
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=27.75 E-value=14 Score=40.93 Aligned_cols=41 Identities=44% Similarity=0.716 Sum_probs=27.7
Q ss_pred cccCCCCcccccCCCCCcch---HHHHHHHHhcCChHHHHHHHH
Q 000085 914 DESGLGGGLGIGGGSGTGMG---GMAALYQLLDSDQPFLCMLRM 954 (2342)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 954 (2342)
|.||=|-|-|-|-|+|.|.| +|..-||.+|..--|+-.+|-
T Consensus 90 d~SGSGsgSgsGsgsgsGSg~l~e~e~eyqp~dEn~~fyyN~r~ 133 (150)
T PF04360_consen 90 DYSGSGSGSGSGSGSGSGSGFLTEMEQEYQPVDENDAFYYNFRP 133 (150)
T ss_pred cccCcccccccccCCcCCCCccccceeeccccccccceeeeccc
Confidence 56555544444444444443 688899999999988888774
No 472
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=27.73 E-value=2.5e+02 Score=37.23 Aligned_cols=76 Identities=5% Similarity=0.090 Sum_probs=53.6
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEE----EEecCC--------------CC-EEEEEeCC
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTC----LALSSD--------------SN-FLVTGSQD 2059 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~Vtc----LAfSPD--------------G~-~LaSGS~D 2059 (2342)
..+++.+|++++.|+...=|.|.++|+.++..++.++|-.+.=.. ..-... .. +++-+-.-
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR 389 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR 389 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence 345899999999998877799999999999998888886653111 111110 11 23446778
Q ss_pred CceEEEeccCCcccc
Q 000085 2060 TTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~ 2074 (2342)
|.|-||.++++..+.
T Consensus 390 g~lEvW~~~~g~Rv~ 404 (415)
T PF14655_consen 390 GILEVWSMRQGPRVA 404 (415)
T ss_pred CeEEEEecCCCCEEE
Confidence 999999999875443
No 473
>COG4907 Predicted membrane protein [Function unknown]
Probab=26.85 E-value=28 Score=44.94 Aligned_cols=16 Identities=75% Similarity=1.332 Sum_probs=11.3
Q ss_pred CCccc-ccCCCCCcchH
Q 000085 919 GGGLG-IGGGSGTGMGG 934 (2342)
Q Consensus 919 ~~~~~-~~~~~~~~~~~ 934 (2342)
|||.| .|||+|.|-||
T Consensus 577 GGG~G~~gGg~GGGGGG 593 (595)
T COG4907 577 GGGGGFSGGGSGGGGGG 593 (595)
T ss_pred CCCCCcCCCCCCCCCCC
Confidence 56666 77888777765
No 474
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=26.13 E-value=1.1e+02 Score=41.52 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=29.4
Q ss_pred CCeEEEEEec----CCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2121 REILCCCVSS----DLGVVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2121 ~~Vt~VafSP----Dg~lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
..+..++++. +..++++.+.|+++++||+.+++++.+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 3445555555 67899999999999999999999977653
No 475
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.96 E-value=3.7e+02 Score=39.75 Aligned_cols=34 Identities=9% Similarity=0.174 Sum_probs=30.3
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2284 GEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2284 gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
.+..+|..+++......+.+-+..|+|.+|++..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 5678999999999889999999999999999654
No 476
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.86 E-value=6.7e+02 Score=33.42 Aligned_cols=117 Identities=9% Similarity=0.059 Sum_probs=69.9
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc---ccCCCCCCccccccCCCCCceeecCCCcccccc---
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG---TIEPSSGMGTPGNSIGSSTPANASADKSRRRRI--- 2109 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~---~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i--- 2109 (2342)
...++|.++.||+|.+.|+.--.|++|.+.+.......... .......+....|+.. ..++.....++..+..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pe 142 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPE 142 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchh
Confidence 35679999999999999999999999999998543222211 1112223444444432 4444444444433222
Q ss_pred CCceEEecCCCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCCe
Q 000085 2110 EGPIHVLRGHHREILCCCVSSDLGVVVSCS--DSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2110 ~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS--~DGtIrIWDLrTGk 2153 (2342)
...+...+.|...|+-..|+++.+.+.-++ ..+++.=+.++++.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 233455567888888888988877654333 34444445555443
No 477
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=25.77 E-value=1.8e+03 Score=29.90 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=35.5
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCccc--ceec----c-cCCCCeEEEEecCCC
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKT--LETA----S-GHCAPVTCLALSSDS 2050 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkl--l~tL----~-GHt~~VtcLAfSPDG 2050 (2342)
..++|.|||++|++--..|.|++++..++.. +..+ . ...+....|+++|+-
T Consensus 33 w~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 33 WALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred eEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4589999999888776579999998655432 2111 1 125668899999874
No 478
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=25.44 E-value=1.5e+03 Score=28.86 Aligned_cols=97 Identities=19% Similarity=0.190 Sum_probs=59.5
Q ss_pred eEEEEEecCCCEEEEEeCC------CcEEEEECCCCeEEEEEec-----------------CCcEEEEEecCCcEEEEEe
Q 000085 2123 ILCCCVSSDLGVVVSCSDS------SDLLLHSIRRGRLIRRLVG-----------------VDAHAVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2123 Vt~VafSPDg~lLaSGS~D------GtIrIWDLrTGklIrsL~g-----------------h~vssLSfSpDG~IlVwds 2179 (2342)
.-++++.+++.++++.-.+ ..|+.++.. |+.+..+.- .+...+++++||+.++...
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 3466677788888877777 788888876 776655521 1146899999999443332
Q ss_pred CC-----C---------eEEEEEeC----CceeeeecCC--------CCCCeEEEEEccCCCEEEEE
Q 000085 2180 LQ-----H---------TLSSFTLN----GVLVARAKLP--------LSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2180 sd-----G---------sI~I~dln----G~~L~s~~~~--------Hs~~ItsLafSPDGk~LaSG 2220 (2342)
.. + .++++..+ +......... ....|+.+.+-+++++++.=
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 21 1 14444443 2222222221 34678899999999987743
No 479
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=24.86 E-value=1.8e+03 Score=29.74 Aligned_cols=101 Identities=14% Similarity=0.173 Sum_probs=54.4
Q ss_pred CeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEecC---------------------------------CcEEEE
Q 000085 2122 EILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGV---------------------------------DAHAVS 2167 (2342)
Q Consensus 2122 ~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh---------------------------------~vssLS 2167 (2342)
.++++.+.+. +.+++|+-.-..|...|.++++....+-.+ +.+.+.
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~ 351 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAH 351 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEE
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceE
Confidence 3678888884 444444444458888888888776665332 135677
Q ss_pred EecCC---cEEEEEeCC----------------CeEEEEEeCCc--ee---eeecCC-----CCCCeEEEEEccC-CCEE
Q 000085 2168 LSSEG---VIMTWNKLQ----------------HTLSSFTLNGV--LV---ARAKLP-----LSGSIGCMEISLD-GHSA 2217 (2342)
Q Consensus 2168 fSpDG---~IlVwdssd----------------GsI~I~dlnG~--~L---~s~~~~-----Hs~~ItsLafSPD-Gk~L 2217 (2342)
+.++| .+++++-.. ..+..|.++.. .+ -+...+ .+.-+.++..-++ |.+|
T Consensus 352 ~~~~g~~~~l~vFDNg~~r~~~~~~~~~~~~~~Sr~v~Y~Ide~~~T~~~vw~y~~~~g~~~yS~~~s~aq~l~n~gn~l 431 (477)
T PF05935_consen 352 LIPDGPQGNLLVFDNGNGRGYGQPAYVSPKDNYSRAVEYRIDENKMTVEQVWEYGKPRGNEFYSPIVSSAQYLPNKGNTL 431 (477)
T ss_dssp E-TTS---SEEEEE--TTGGGS--SSCCG-----EEEEEEEETTTTEEEEEEEESGGGGGGG--SS--EEEEETTTTEEE
T ss_pred EcCCCCeEEEEEEECCCCCCCCCccccccccccceEEEEEecCCCceEEEEEEeCCCCCCCccCCcceeeEEecCCCCEE
Confidence 78888 888887322 12455555421 11 111111 4556777888888 8888
Q ss_pred EEEeC
Q 000085 2218 LIGVN 2222 (2342)
Q Consensus 2218 aSGS~ 2222 (2342)
+..+.
T Consensus 432 i~~g~ 436 (477)
T PF05935_consen 432 ITSGM 436 (477)
T ss_dssp EEEEE
T ss_pred EEeCc
Confidence 87664
No 480
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=24.49 E-value=1.8e+02 Score=40.73 Aligned_cols=70 Identities=11% Similarity=0.172 Sum_probs=51.9
Q ss_pred eeEEEEEc--CCCCEEEEEEcCCcEEEEecCCc--ccce-ecccCCCCeEEEEecCCC---C---EEEEEeCCCceEEEe
Q 000085 1998 SSAVVSIT--HDKEIITGGHVDGSIKLLTSDGA--KTLE-TASGHCAPVTCLALSSDS---N---FLVTGSQDTTILLWR 2066 (2342)
Q Consensus 1998 Svt~VafS--pDGklLASGS~DGsIrVWDl~tg--kll~-tL~GHt~~VtcLAfSPDG---~---~LaSGS~DGTVrVWD 2066 (2342)
++..++++ ...++||+++....|.||-.... +... .-..|...|-||+|-++. . .|++++-.|.+.+|+
T Consensus 165 SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 165 SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred ceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 66778888 77889999999999998865432 1111 111366789999997643 2 788899999999988
Q ss_pred c
Q 000085 2067 I 2067 (2342)
Q Consensus 2067 l 2067 (2342)
+
T Consensus 245 I 245 (717)
T PF08728_consen 245 I 245 (717)
T ss_pred E
Confidence 8
No 481
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=24.16 E-value=2.6e+02 Score=40.24 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=52.1
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCC--cccce---ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDG--AKTLE---TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~t--gkll~---tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
|+.+...+.+++.|..-|.+.+++... +.... .-.+|+..+.-+.|.|+++.++.+=.-|...+|....+
T Consensus 153 c~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~ 227 (1023)
T KOG2006|consen 153 CCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGN 227 (1023)
T ss_pred eeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEeccccc
Confidence 456677788999999999999998653 22221 12345557888899999998888888888888887654
No 482
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=24.03 E-value=1.5e+03 Score=28.45 Aligned_cols=203 Identities=10% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCCCCceeecCCCeEEec----CCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC------EEEEEE
Q 000085 1946 DGQGTPFLFQHGKASASP----ASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE------IITGGH 2015 (2342)
Q Consensus 1946 dg~~s~flf~~Gk~LaSs----SsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk------lLASGS 2015 (2342)
|..+.-.....|..-... .....+-+|+..++.....+.+|..+....+.... +.+..... ..++-.
T Consensus 9 D~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lnd---l~VD~~~~~~~~~~aYItD~ 85 (287)
T PF03022_consen 9 DECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLND---LVVDVRDGNCDDGFAYITDS 85 (287)
T ss_dssp -TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEE---EEEECTTTTS-SEEEEEEET
T ss_pred cCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccce---EEEEccCCCCcceEEEEeCC
Q ss_pred cCCcEEEEecCCcccceecccC-------------------CCCeEEEEecC---CCCEEEEEeCCCceEEEeccCCccc
Q 000085 2016 VDGSIKLLTSDGAKTLETASGH-------------------CAPVTCLALSS---DSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 2016 ~DGsIrVWDl~tgkll~tL~GH-------------------t~~VtcLAfSP---DG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
..+.|.|+|+.+++..+.+..+ .+.|..++.+| +|+.|+-+...++ ++|.+.+
T Consensus 86 ~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T---- 160 (287)
T PF03022_consen 86 GGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPT---- 160 (287)
T ss_dssp TTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEH----
T ss_pred CcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEH----
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCcccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
....+....-.. ...+..+-........++++++|.+.++--..+.|..||..+
T Consensus 161 ------------------------~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 161 ------------------------SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp ------------------------HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred ------------------------HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCC
Q ss_pred ----CeEEEEEecCC----cEEEEEec--CCcEEEEEeC
Q 000085 2152 ----GRLIRRLVGVD----AHAVSLSS--EGVIMTWNKL 2180 (2342)
Q Consensus 2152 ----GklIrsL~gh~----vssLSfSp--DG~IlVwdss 2180 (2342)
..........+ ...+.+.+ +|.+.+...+
T Consensus 217 ~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 217 PYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp SB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred CcCccchheeEEcCceeeccceeeeccccCceEEEEECc
No 483
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=23.66 E-value=6.8e+02 Score=30.44 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=31.7
Q ss_pred EcCCcEEEEecCCc--ccceecccCCCCeEEEEecCCCCEEEEEe
Q 000085 2015 HVDGSIKLLTSDGA--KTLETASGHCAPVTCLALSSDSNFLVTGS 2057 (2342)
Q Consensus 2015 S~DGsIrVWDl~tg--kll~tL~GHt~~VtcLAfSPDG~~LaSGS 2057 (2342)
...+.|.+|++... +...++.. -+.|..+.++..|+||+|-=
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEE
Confidence 55788999999832 34444543 37899999999999999953
No 484
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=23.17 E-value=2.4e+03 Score=30.50 Aligned_cols=66 Identities=6% Similarity=-0.065 Sum_probs=48.3
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE----ecC-----------------CcEEEEEecCCcEEEEE
Q 000085 2120 HREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL----VGV-----------------DAHAVSLSSEGVIMTWN 2178 (2342)
Q Consensus 2120 s~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL----~gh-----------------~vssLSfSpDG~IlVwd 2178 (2342)
.+.|.+++...-+..++..-.||+|.++|-.+-+.+... ... ....++|||.+..++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 456888887777888999999999999998776544333 110 12357899999988887
Q ss_pred eCCCeEE
Q 000085 2179 KLQHTLS 2185 (2342)
Q Consensus 2179 ssdGsI~ 2185 (2342)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 7777744
No 485
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=23.00 E-value=1.4e+03 Score=27.81 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=36.5
Q ss_pred CcEEEEEecCCcEEEEEeCCCeEEEEEeCC--ceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2162 DAHAVSLSSEGVIMTWNKLQHTLSSFTLNG--VLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2162 ~vssLSfSpDG~IlVwdssdGsI~I~dlnG--~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+...++.+..+.+++. .....|.+|++.+ ..+.. .++--+.|..+.++..|.|++|-=
T Consensus 19 EP~~~c~~g~d~Lfva-~~g~~Vev~~l~~~~~~~~~-~F~Tv~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVA-ASGCKVEVYDLEQEECPLLC-TFSTVGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred CcceeeccCCceEEEE-cCCCEEEEEEcccCCCceeE-EEcchhheeEEEeccccceEEEEE
Confidence 3444555543344343 5667788888762 22221 222458899999999999999764
No 486
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=22.80 E-value=5.7e+02 Score=33.57 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=25.2
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2287 QDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2287 ~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
..|.++...+..+.|++-+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999999999999999999999753
No 487
>PHA02790 Kelch-like protein; Provisional
Probab=22.46 E-value=1e+03 Score=32.08 Aligned_cols=64 Identities=9% Similarity=0.065 Sum_probs=34.9
Q ss_pred cCCCCEEEEEEcC--CcEEEEecCCcccc--eecccCCCCeEEEEecCCCCEEEEEeCCC---ceEEEeccCC
Q 000085 2005 THDKEIITGGHVD--GSIKLLTSDGAKTL--ETASGHCAPVTCLALSSDSNFLVTGSQDT---TILLWRIHRA 2070 (2342)
Q Consensus 2005 SpDGklLASGS~D--GsIrVWDl~tgkll--~tL~GHt~~VtcLAfSPDG~~LaSGS~DG---TVrVWDl~tg 2070 (2342)
.-+|.+.+.|+.+ .++..||..+++-. ..+.........+.+ +|+..+.|+.++ ++..||..+.
T Consensus 316 ~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 316 PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCC
Confidence 3577877777754 35778887654322 122211111122222 577777777654 4667887664
No 488
>PRK13615 lipoprotein LpqB; Provisional
Probab=22.30 E-value=1.7e+03 Score=30.87 Aligned_cols=146 Identities=9% Similarity=0.006 Sum_probs=81.2
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc--cc
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG--TI 2078 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~--~~ 2078 (2342)
..++++++..+|....++.++++... +.....+.+ ..++.-.|.++| .+.+.-.+...++............ ..
T Consensus 338 s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~--~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~~ 413 (557)
T PRK13615 338 AATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDTR--PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVSW 413 (557)
T ss_pred cceEcCCCceEEEEcCCceEEEecCC-CcceeeccC--CccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeeccc
Confidence 47889999988888778878887655 222222332 235666777776 6666655444555444321111111 12
Q ss_pred CCCCCCccccccCCCCCceeecC----CCccc----cccCCc--e----EEecCCCCCeEEEEEecCCCEEEEEe---CC
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASA----DKSRR----RRIEGP--I----HVLRGHHREILCCCVSSDLGVVVSCS---DS 2141 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~----D~s~~----~~i~~~--l----~~L~GHs~~Vt~VafSPDg~lLaSGS---~D 2141 (2342)
.....|..+..|+||-.++.... ..+.. ..-..+ + ..+..-...+.++.|..++.+++.+. .+
T Consensus 414 ~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~~~~~~ 493 (557)
T PRK13615 414 TATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTLAPDGE 493 (557)
T ss_pred cCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEeccCCCC
Confidence 23356888999999988866543 11111 111111 1 11111233889999999888766552 33
Q ss_pred CcEEEEECC
Q 000085 2142 SDLLLHSIR 2150 (2342)
Q Consensus 2142 GtIrIWDLr 2150 (2342)
..+++..+.
T Consensus 494 ~~v~~v~v~ 502 (557)
T PRK13615 494 RQVELHQVG 502 (557)
T ss_pred ceEEEEECC
Confidence 455555554
No 489
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=21.97 E-value=4.4e+02 Score=34.57 Aligned_cols=31 Identities=6% Similarity=0.167 Sum_probs=25.2
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2121 REILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
..|.++++.+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999974
No 490
>PRK13684 Ycf48-like protein; Provisional
Probab=21.94 E-value=1.7e+03 Score=28.41 Aligned_cols=99 Identities=8% Similarity=-0.064 Sum_probs=54.9
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEE-EECCCCeEEEEEe---cCCcEEEEEecCCcEEEEEeCCCeEEEEEeC-Ccee
Q 000085 2120 HREILCCCVSSDLGVVVSCSDSSDLLL-HSIRRGRLIRRLV---GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLV 2194 (2342)
Q Consensus 2120 s~~Vt~VafSPDg~lLaSGS~DGtIrI-WDLrTGklIrsL~---gh~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L 2194 (2342)
...+.++.+.+++.+++++. .|.+.. +| ..++.-..+. ....+.+.+.++|.+++.+. .|.+..-+.+ |..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCcc
Confidence 45788999999887665554 455543 22 1222222222 23467788889998877653 4554322233 2221
Q ss_pred eeecCC---CCCCeEEEEEccCCCEEEEEe
Q 000085 2195 ARAKLP---LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2195 ~s~~~~---Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.....+ ....+.++.+.+++..+++|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEcC
Confidence 111111 123578889999888777663
No 491
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=21.90 E-value=3.6e+02 Score=31.15 Aligned_cols=30 Identities=10% Similarity=0.073 Sum_probs=22.8
Q ss_pred CCeEEEEEecCC------CEEEEEeCCCcEEEEECC
Q 000085 2121 REILCCCVSSDL------GVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2121 ~~Vt~VafSPDg------~lLaSGS~DGtIrIWDLr 2150 (2342)
..|..++|||.| .+|++.+.+|.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 378899999853 467777888888888754
No 492
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=21.63 E-value=6.4e+02 Score=27.96 Aligned_cols=88 Identities=14% Similarity=0.271 Sum_probs=58.0
Q ss_pred CCCceEEEEeeeeEeeeeeeeEEEEEEEeeEEEEEeCCCCCCCCCCccccccccceEeeccceeEEee-----ccccCcc
Q 000085 1470 ELDERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQEKDRSWLMSSLHQIYS-----RRYLLRR 1544 (2342)
Q Consensus 1470 e~~EkVils~~c~mVtPl~v~~G~L~IT~~~LyF~vd~~~~~~~~~~~~~~~~k~~~~~~~~I~~i~~-----Rr~~l~~ 1544 (2342)
.+..+|.+.+++.-...+. .-|.++|++..+-|.-+.+.. ....+++++|..|.- .+|.-|
T Consensus 4 SlNtkvdl~~~ats~~g~~-~yGkimiGDkaFEFyn~~n~~------------dyIQIPW~eI~~V~a~V~fkgk~I~R- 69 (118)
T PF06115_consen 4 SLNTKVDLTTKATSYLGLG-KYGKIMIGDKAFEFYNDRNVE------------DYIQIPWEEIDYVIASVSFKGKWIPR- 69 (118)
T ss_pred ccccEEEEEEeeEEEeccc-ccCeEEEcccceEeecCCChh------------hcEEeChhheeEEEEEEEECCCEEee-
Confidence 3567888998888777766 899999999999887443221 345677888877643 343333
Q ss_pred cEEEEEEeCCceEEEEcCChhhHHHHHHHHHh
Q 000085 1545 SALELFMVDRSNFFFDFGSTEGRRNAYRAIVQ 1576 (2342)
Q Consensus 1545 ~alEif~~~~~s~f~~F~~~~~~~~~~~~i~~ 1576 (2342)
.+|+++.+-.|- |.. .+-.++++.+-.
T Consensus 70 --F~I~Tk~~G~f~--Fss-kd~k~~Lk~~r~ 96 (118)
T PF06115_consen 70 --FAIFTKKNGKFT--FSS-KDSKKVLKAIRK 96 (118)
T ss_pred --EEEEECCCCEEE--EEE-CChHHHHHHHHH
Confidence 899998755554 433 334455655543
No 493
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=21.43 E-value=6.6e+02 Score=26.43 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=34.2
Q ss_pred eCCCcEEEEECCCCeEEEEEec-CCcEEEEEecCCcEEEEE-eCCCeEEEEEeCC
Q 000085 2139 SDSSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVIMTWN-KLQHTLSSFTLNG 2191 (2342)
Q Consensus 2139 S~DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~IlVwd-ssdGsI~I~dlnG 2191 (2342)
..+|.+..||..+++..--+.+ +-..-+++++|+..++.. .....|.-|-+.|
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEEEEEEeC
Confidence 3467888899999876544444 346789999999966554 4456666666554
No 494
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=21.21 E-value=9.7e+02 Score=32.42 Aligned_cols=149 Identities=11% Similarity=0.047 Sum_probs=83.0
Q ss_pred EEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCC--------CEEEEEeCCCceEEEeccCCcc
Q 000085 2002 VSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDS--------NFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 2002 VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG--------~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
+-...|.. ++..|..-..++-.|+..|+.+....-|.+. -+.|.|+. +.|+--|.. .|.--|.+-
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~-svFrIDPR~--- 546 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDY-SVFRIDPRA--- 546 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeeccc-ceEEecccc---
Confidence 33444555 4456667778888899999999999888876 46777753 233333322 222222221
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
.|+.+++.-. ..+ .......|.. .....+++.||..|.|++||--.-
T Consensus 547 -------------------~gNKi~v~es------------KdY-~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~ 593 (776)
T COG5167 547 -------------------RGNKIKVVES------------KDY-KTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGK 593 (776)
T ss_pred -------------------cCCceeeeee------------hhc-cccccccccc-cccCceEEEecCCCceeeehhhcc
Confidence 1111111000 000 1112222222 235678999999999999995332
Q ss_pred eEEEEEec--CCcEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2153 RLIRRLVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2153 klIrsL~g--h~vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
.....+.+ ..+..+..+.+|..++..+.+ .+.+.++.
T Consensus 594 rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 594 RAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred hhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 22222332 346778889999988876643 44455543
No 495
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.91 E-value=2.6e+03 Score=30.06 Aligned_cols=40 Identities=10% Similarity=0.205 Sum_probs=32.3
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2120 HREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2120 s~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
...+..+.+||+.++++-=..+|.|.+-+....+....+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 3567788899999999999999999998887766666554
No 496
>PLN02153 epithiospecifier protein
Probab=20.47 E-value=1.8e+03 Score=28.01 Aligned_cols=39 Identities=5% Similarity=0.003 Sum_probs=20.9
Q ss_pred CcEEEEECCCCeEEEEEe-----cCCcEEEEEecCCcEEEEEeC
Q 000085 2142 SDLLLHSIRRGRLIRRLV-----GVDAHAVSLSSEGVIMTWNKL 2180 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrsL~-----gh~vssLSfSpDG~IlVwdss 2180 (2342)
..+.+||+.+.+-...-. .......+...++.+++++..
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcc
Confidence 358888887765433211 111222233446788888764
No 497
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=20.17 E-value=3.4e+02 Score=23.15 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=23.2
Q ss_pred cCCCEEEEE-eCCCcEEEEECCCCeEEEEEec
Q 000085 2130 SDLGVVVSC-SDSSDLLLHSIRRGRLIRRLVG 2160 (2342)
Q Consensus 2130 PDg~lLaSG-S~DGtIrIWDLrTGklIrsL~g 2160 (2342)
|+++.++.+ -.+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 466665554 4678999999999988887764
Done!