Query 000085
Match_columns 2342
No_of_seqs 1059 out of 4423
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 14:08:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t77_A Lipopolysaccharide-resp 100.0 8E-121 3E-125 1109.6 34.1 404 1474-1879 2-414 (414)
2 1nr0_A Actin interacting prote 100.0 9.2E-33 3.1E-37 361.1 37.2 309 1996-2316 147-610 (611)
3 1vyh_C Platelet-activating fac 100.0 3.4E-32 1.2E-36 338.6 36.2 276 1997-2315 109-409 (410)
4 3ow8_A WD repeat-containing pr 100.0 1.5E-31 5.2E-36 322.4 39.0 278 1996-2316 32-320 (321)
5 1got_B GT-beta; complex (GTP-b 100.0 2.5E-31 8.4E-36 321.6 37.6 274 1998-2314 57-340 (340)
6 2ymu_A WD-40 repeat protein; u 100.0 4.5E-31 1.5E-35 337.9 37.7 334 1954-2314 230-577 (577)
7 1nr0_A Actin interacting prote 100.0 1.1E-30 3.6E-35 341.6 37.0 311 2000-2318 22-356 (611)
8 4gqb_B Methylosome protein 50; 100.0 7.8E-31 2.7E-35 320.6 33.1 279 1955-2318 40-332 (344)
9 2pbi_B Guanine nucleotide-bind 100.0 6.3E-30 2.2E-34 312.1 37.4 275 1998-2314 66-354 (354)
10 2ymu_A WD-40 repeat protein; u 100.0 7.2E-30 2.5E-34 326.7 38.0 356 1954-2336 189-562 (577)
11 1r5m_A SIR4-interacting protei 100.0 1.1E-29 3.7E-34 308.7 35.4 315 1955-2316 55-424 (425)
12 3iz6_a 40S ribosomal protein R 100.0 1.1E-29 3.9E-34 312.1 35.2 280 1998-2318 68-376 (380)
13 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.1E-29 7.4E-34 305.7 36.6 280 1955-2318 26-336 (345)
14 2ynn_A Coatomer subunit beta'; 100.0 1.5E-29 5.2E-34 301.3 34.3 275 1998-2316 15-301 (304)
15 4g56_B MGC81050 protein; prote 100.0 3.9E-30 1.3E-34 314.6 29.6 278 1997-2318 43-344 (357)
16 3frx_A Guanine nucleotide-bind 100.0 4.2E-29 1.4E-33 299.8 37.1 271 1957-2316 30-316 (319)
17 2xzm_R RACK1; ribosome, transl 100.0 5.1E-29 1.7E-33 301.4 36.7 277 1956-2316 38-339 (343)
18 4ery_A WD repeat-containing pr 100.0 9.5E-29 3.2E-33 293.0 36.6 277 1997-2316 24-311 (312)
19 2hes_X YDR267CP; beta-propelle 100.0 1.1E-28 3.7E-33 297.6 37.5 275 1959-2316 26-327 (330)
20 1gxr_A ESG1, transducin-like e 100.0 2.1E-28 7.2E-33 288.5 37.5 275 1996-2315 51-335 (337)
21 3zwl_B Eukaryotic translation 100.0 2.3E-28 7.7E-33 291.4 37.3 289 1997-2317 33-346 (369)
22 1erj_A Transcriptional repress 100.0 2.3E-28 7.7E-33 301.9 38.1 280 1954-2317 73-389 (393)
23 4aow_A Guanine nucleotide-bind 100.0 5.4E-28 1.8E-32 286.5 37.5 284 1988-2318 33-338 (340)
24 3dm0_A Maltose-binding peripla 100.0 1.3E-27 4.3E-32 316.4 40.9 275 1957-2316 395-692 (694)
25 1vyh_C Platelet-activating fac 100.0 4.5E-28 1.5E-32 301.5 31.1 258 1955-2222 118-400 (410)
26 3vl1_A 26S proteasome regulato 100.0 6.5E-28 2.2E-32 295.8 31.5 273 1953-2317 64-365 (420)
27 1k8k_C P40, ARP2/3 complex 41 100.0 8.1E-28 2.8E-32 288.6 30.8 307 1998-2317 10-361 (372)
28 2pm9_A Protein WEB1, protein t 100.0 1E-28 3.5E-33 301.6 23.1 329 1964-2316 42-413 (416)
29 1sq9_A Antiviral protein SKI8; 100.0 5E-27 1.7E-31 285.3 34.9 280 1958-2317 27-395 (397)
30 3ow8_A WD repeat-containing pr 100.0 2.2E-27 7.4E-32 286.2 31.2 259 1956-2222 47-310 (321)
31 3sfz_A APAF-1, apoptotic pepti 100.0 2.2E-27 7.4E-32 332.3 35.8 344 1954-2318 666-1117(1249)
32 4e54_B DNA damage-binding prot 100.0 5.7E-28 2E-32 301.9 26.8 292 1997-2318 120-431 (435)
33 2pm7_B Protein transport prote 100.0 7.7E-27 2.6E-31 277.1 34.3 241 1997-2316 10-284 (297)
34 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.2E-27 2.5E-31 283.5 33.9 241 1998-2317 18-283 (345)
35 3odt_A Protein DOA1; ubiquitin 100.0 1.4E-26 4.9E-31 270.5 35.0 272 1997-2318 19-297 (313)
36 4ggc_A P55CDC, cell division c 100.0 8.3E-27 2.8E-31 273.7 32.6 273 2000-2318 29-316 (318)
37 1got_B GT-beta; complex (GTP-b 100.0 7.7E-27 2.6E-31 282.3 32.7 257 1955-2222 65-332 (340)
38 3frx_A Guanine nucleotide-bind 100.0 2E-26 6.9E-31 276.6 35.6 235 1998-2317 19-267 (319)
39 3i2n_A WD repeat-containing pr 100.0 8.4E-27 2.9E-31 277.6 32.0 282 1996-2319 18-355 (357)
40 1erj_A Transcriptional repress 100.0 1.7E-26 5.8E-31 285.1 35.7 238 1998-2318 66-342 (393)
41 3ei3_B DNA damage-binding prot 100.0 2.4E-26 8.2E-31 279.8 36.4 266 1997-2316 74-381 (383)
42 2pm9_A Protein WEB1, protein t 100.0 4.5E-27 1.5E-31 287.0 29.5 279 1998-2319 14-339 (416)
43 2j04_B YDR362CP, TAU91; beta p 100.0 1.6E-27 5.5E-32 308.0 26.8 298 1955-2317 171-517 (524)
44 3dwl_C Actin-related protein 2 100.0 8.8E-28 3E-32 290.9 22.9 310 1998-2315 13-377 (377)
45 1pgu_A Actin interacting prote 100.0 1E-26 3.5E-31 298.1 33.8 306 1997-2316 161-613 (615)
46 3sfz_A APAF-1, apoptotic pepti 100.0 6.1E-27 2.1E-31 327.8 34.1 311 1996-2318 615-1035(1249)
47 4gqb_B Methylosome protein 50; 100.0 1.1E-26 3.7E-31 284.0 31.4 241 1998-2318 32-290 (344)
48 3f3f_A Nucleoporin SEH1; struc 100.0 2E-26 6.7E-31 270.3 31.6 286 1995-2318 10-338 (351)
49 3k26_A Polycomb protein EED; W 100.0 6.7E-27 2.3E-31 279.0 28.0 269 1960-2315 37-364 (366)
50 2ynn_A Coatomer subunit beta'; 100.0 3.6E-26 1.2E-30 272.3 34.0 258 1955-2221 23-291 (304)
51 2oaj_A Protein SNI1; WD40 repe 100.0 8.4E-27 2.9E-31 319.0 32.3 191 1955-2157 27-248 (902)
52 4aez_A CDC20, WD repeat-contai 100.0 7.8E-26 2.7E-30 279.0 37.4 272 1957-2319 103-382 (401)
53 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.4E-26 3.2E-30 281.4 38.1 301 1956-2317 128-442 (445)
54 3iz6_a 40S ribosomal protein R 99.9 8.8E-27 3E-31 286.4 27.6 259 1955-2222 76-364 (380)
55 3v7d_B Cell division control p 99.9 8.2E-26 2.8E-30 282.2 36.7 303 1956-2314 131-460 (464)
56 4gga_A P55CDC, cell division c 99.9 1.8E-25 6.2E-30 277.7 38.7 273 1956-2318 115-396 (420)
57 2pbi_B Guanine nucleotide-bind 99.9 5.6E-26 1.9E-30 277.3 32.9 258 1955-2222 74-346 (354)
58 3vl1_A 26S proteasome regulato 99.9 3.6E-26 1.2E-30 280.4 31.4 295 1952-2316 104-418 (420)
59 3mkq_A Coatomer beta'-subunit; 99.9 5.4E-26 1.8E-30 303.1 35.5 259 1955-2222 23-292 (814)
60 2hes_X YDR267CP; beta-propelle 99.9 8.6E-26 2.9E-30 272.4 33.8 243 1998-2317 16-280 (330)
61 1pgu_A Actin interacting prote 99.9 2.5E-26 8.5E-31 294.5 30.3 306 1998-2316 20-365 (615)
62 4h5i_A Guanine nucleotide-exch 99.9 2.9E-26 1E-30 281.4 29.1 275 1998-2317 16-343 (365)
63 3bg1_A Protein SEC13 homolog; 99.9 9E-27 3.1E-31 279.3 23.9 240 1997-2316 14-292 (316)
64 1r5m_A SIR4-interacting protei 99.9 1.1E-25 3.6E-30 273.6 31.9 275 1997-2317 46-361 (425)
65 3dw8_B Serine/threonine-protei 99.9 6.5E-26 2.2E-30 279.9 30.5 274 1997-2314 29-443 (447)
66 2xzm_R RACK1; ribosome, transl 99.9 3.4E-25 1.2E-29 267.9 36.1 235 1998-2318 23-286 (343)
67 4a11_B DNA excision repair pro 99.9 5.1E-25 1.8E-29 266.7 37.0 277 1995-2319 42-367 (408)
68 1gxr_A ESG1, transducin-like e 99.9 1.5E-25 5.2E-30 264.1 31.3 277 1998-2319 11-298 (337)
69 3gre_A Serine/threonine-protei 99.9 5.6E-26 1.9E-30 281.5 28.1 278 1995-2314 62-437 (437)
70 3jrp_A Fusion protein of prote 99.9 2.9E-25 9.8E-30 266.1 31.8 241 1997-2316 12-286 (379)
71 4g56_B MGC81050 protein; prote 99.9 2.3E-25 7.8E-30 272.5 30.2 260 1955-2222 52-332 (357)
72 4aow_A Guanine nucleotide-bind 99.9 1.9E-24 6.6E-29 256.0 35.5 261 1957-2222 51-326 (340)
73 4ery_A WD repeat-containing pr 99.9 1.2E-24 4.1E-29 257.8 33.5 257 1955-2221 33-298 (312)
74 2aq5_A Coronin-1A; WD40 repeat 99.9 4.4E-25 1.5E-29 271.6 30.9 271 1960-2317 50-342 (402)
75 3mkq_A Coatomer beta'-subunit; 99.9 3.6E-25 1.2E-29 295.1 32.2 277 1998-2317 15-302 (814)
76 3v7d_B Cell division control p 99.9 2.1E-24 7.2E-29 269.5 36.4 265 2005-2319 129-423 (464)
77 2oaj_A Protein SNI1; WD40 repe 99.9 2.4E-25 8.3E-30 304.6 29.2 342 1952-2315 64-659 (902)
78 1p22_A F-BOX/WD-repeat protein 99.9 9.7E-25 3.3E-29 272.1 31.0 263 2003-2318 138-415 (435)
79 1sq9_A Antiviral protein SKI8; 99.9 1.3E-24 4.6E-29 264.0 30.1 246 1996-2318 16-323 (397)
80 3dm0_A Maltose-binding peripla 99.9 2.6E-24 9E-29 284.8 33.3 238 1997-2318 383-633 (694)
81 1yfq_A Cell cycle arrest prote 99.9 2.9E-24 1E-28 255.2 30.1 269 1996-2314 11-321 (342)
82 1k8k_C P40, ARP2/3 complex 41 99.9 3.7E-24 1.2E-28 256.9 29.7 260 1955-2222 18-350 (372)
83 3k26_A Polycomb protein EED; W 99.9 1.9E-24 6.3E-29 257.9 26.8 242 1994-2319 16-320 (366)
84 3mmy_A MRNA export factor; mRN 99.9 2.9E-24 9.8E-29 255.9 27.0 268 1995-2315 38-344 (368)
85 3zwl_B Eukaryotic translation 99.9 2.1E-23 7.3E-28 248.5 33.0 258 1955-2222 42-335 (369)
86 2aq5_A Coronin-1A; WD40 repeat 99.9 1.2E-23 4.1E-28 258.9 31.0 248 2001-2319 39-301 (402)
87 2ovr_B FBW7, F-BOX/WD repeat p 99.9 6E-23 2.1E-27 256.0 35.6 264 2004-2319 125-393 (445)
88 2xyi_A Probable histone-bindin 99.9 1.6E-23 5.5E-28 261.7 29.0 244 1998-2316 130-409 (430)
89 3dwl_C Actin-related protein 2 99.9 2.2E-24 7.7E-29 261.1 19.8 228 1954-2190 20-280 (377)
90 2j04_B YDR362CP, TAU91; beta p 99.9 3.1E-24 1.1E-28 277.3 22.4 241 2005-2317 170-428 (524)
91 3odt_A Protein DOA1; ubiquitin 99.9 4.3E-23 1.5E-27 241.1 28.6 271 1953-2281 25-303 (313)
92 2pm7_B Protein transport prote 99.9 9.4E-23 3.2E-27 242.0 32.0 223 1955-2222 19-274 (297)
93 4a11_B DNA excision repair pro 99.9 5.3E-23 1.8E-27 249.0 30.2 316 1956-2318 55-406 (408)
94 3jro_A Fusion protein of prote 99.9 9E-24 3.1E-28 283.5 24.5 241 1997-2317 10-285 (753)
95 3i2n_A WD repeat-containing pr 99.9 3.2E-23 1.1E-27 246.8 26.2 255 1959-2221 33-341 (357)
96 4aez_A CDC20, WD repeat-contai 99.9 1.1E-22 3.8E-27 250.9 31.1 235 2000-2318 97-337 (401)
97 4e54_B DNA damage-binding prot 99.9 3.3E-23 1.1E-27 259.0 25.8 257 1956-2221 131-419 (435)
98 4gq1_A NUP37; propeller, trans 99.9 2.1E-23 7.3E-28 258.1 23.8 251 2001-2314 94-386 (393)
99 3f3f_A Nucleoporin SEH1; struc 99.9 5.8E-23 2E-27 240.9 25.4 263 1955-2222 21-326 (351)
100 3gre_A Serine/threonine-protei 99.9 1.9E-23 6.4E-28 258.9 21.4 266 2004-2318 35-360 (437)
101 2j04_A TAU60, YPL007P, hypothe 99.9 3.8E-23 1.3E-27 265.4 22.8 254 1999-2316 18-296 (588)
102 3ei3_B DNA damage-binding prot 99.9 8.9E-23 3.1E-27 248.4 24.9 254 1956-2221 84-371 (383)
103 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2.9E-22 1E-26 251.1 30.1 274 1999-2316 7-390 (450)
104 1l0q_A Surface layer protein; 99.9 2.6E-21 8.8E-26 235.4 37.4 267 1959-2318 4-276 (391)
105 4h5i_A Guanine nucleotide-exch 99.9 2.2E-22 7.5E-27 247.1 27.4 263 1955-2222 24-332 (365)
106 2j04_A TAU60, YPL007P, hypothe 99.9 1.5E-23 5.3E-28 269.0 17.1 302 1952-2306 22-350 (588)
107 4ggc_A P55CDC, cell division c 99.9 1.2E-21 4.2E-26 229.8 31.9 256 1957-2222 36-304 (318)
108 3bg1_A Protein SEC13 homolog; 99.9 8.5E-23 2.9E-27 244.8 22.4 224 1955-2222 23-282 (316)
109 3bws_A Protein LP49; two-domai 99.9 3.7E-21 1.2E-25 237.4 37.5 289 1955-2317 132-432 (433)
110 3lrv_A PRE-mRNA-splicing facto 99.9 1.1E-22 3.9E-27 245.5 22.1 236 2004-2317 44-292 (343)
111 3lrv_A PRE-mRNA-splicing facto 99.9 1.5E-22 5.1E-27 244.5 22.6 261 1954-2314 45-330 (343)
112 3jrp_A Fusion protein of prote 99.9 1.7E-21 5.7E-26 233.5 30.4 224 1955-2223 21-277 (379)
113 4gga_A P55CDC, cell division c 99.9 4.2E-21 1.4E-25 238.6 34.5 252 2000-2336 109-377 (420)
114 3dw8_B Serine/threonine-protei 99.9 7.2E-22 2.5E-26 243.8 27.5 265 1955-2221 38-435 (447)
115 1p22_A F-BOX/WD-repeat protein 99.9 8.5E-22 2.9E-26 245.6 28.1 278 1956-2295 142-433 (435)
116 1yfq_A Cell cycle arrest prote 99.9 8.6E-22 2.9E-26 234.0 25.9 257 1955-2225 21-315 (342)
117 2w18_A PALB2, fancn, partner a 99.9 5.8E-21 2E-25 232.8 29.7 242 2010-2315 56-355 (356)
118 3vu4_A KMHSV2; beta-propeller 99.9 3E-21 1E-25 235.6 26.9 231 1997-2318 20-272 (355)
119 3mmy_A MRNA export factor; mRN 99.9 8E-21 2.7E-25 226.2 25.5 257 1957-2225 54-338 (368)
120 4gq1_A NUP37; propeller, trans 99.9 2E-21 6.7E-26 240.5 17.8 249 1955-2222 99-379 (393)
121 3bws_A Protein LP49; two-domai 99.9 8.3E-20 2.8E-24 225.3 29.8 236 2000-2318 126-391 (433)
122 3jro_A Fusion protein of prote 99.9 1.7E-20 5.9E-25 251.7 25.5 226 1955-2225 19-277 (753)
123 2xyi_A Probable histone-bindin 99.8 2E-19 6.7E-24 224.8 30.7 225 1957-2221 141-398 (430)
124 2vdu_B TRNA (guanine-N(7)-)-me 99.8 1.5E-19 5.2E-24 226.6 29.6 220 1998-2220 104-371 (450)
125 3vu4_A KMHSV2; beta-propeller 99.8 7.2E-19 2.5E-23 214.6 32.5 282 1955-2317 29-336 (355)
126 1l0q_A Surface layer protein; 99.8 1.8E-18 6.2E-23 210.4 32.5 225 2009-2318 3-234 (391)
127 2w18_A PALB2, fancn, partner a 99.8 2.1E-19 7.1E-24 219.2 22.3 186 1996-2221 111-345 (356)
128 1nir_A Nitrite reductase; hemo 99.8 2.1E-18 7.1E-23 223.9 31.7 320 1955-2319 147-516 (543)
129 2hqs_A Protein TOLB; TOLB, PAL 99.8 2.4E-18 8.4E-23 215.1 29.2 226 2008-2318 143-388 (415)
130 2ecf_A Dipeptidyl peptidase IV 99.8 1.5E-17 5.1E-22 220.6 31.1 312 1954-2316 45-458 (741)
131 2ojh_A Uncharacterized protein 99.8 9.2E-18 3.2E-22 192.9 23.5 260 2013-2308 17-293 (297)
132 2hqs_A Protein TOLB; TOLB, PAL 99.8 4.6E-17 1.6E-21 203.6 30.2 238 1967-2299 159-410 (415)
133 1ri6_A Putative isomerase YBHE 99.8 2.3E-16 8E-21 186.6 31.4 268 1961-2316 9-307 (343)
134 1k32_A Tricorn protease; prote 99.8 5E-17 1.7E-21 225.5 28.6 329 1952-2336 59-484 (1045)
135 1xfd_A DIP, dipeptidyl aminope 99.7 1.3E-17 4.3E-22 220.4 21.2 279 2001-2316 21-392 (723)
136 1pby_B Quinohemoprotein amine 99.7 7E-17 2.4E-21 190.6 24.2 263 2009-2319 2-312 (337)
137 2ecf_A Dipeptidyl peptidase IV 99.7 3.9E-17 1.3E-21 216.6 24.4 241 1998-2316 38-366 (741)
138 3u4y_A Uncharacterized protein 99.7 8.1E-16 2.8E-20 182.8 32.0 269 1957-2318 10-305 (331)
139 1nir_A Nitrite reductase; hemo 99.7 1.1E-16 3.8E-21 207.8 25.7 271 2004-2319 145-460 (543)
140 2z3z_A Dipeptidyl aminopeptida 99.7 3.6E-16 1.2E-20 206.5 30.0 277 1998-2318 83-436 (706)
141 1k32_A Tricorn protease; prote 99.7 3E-16 1E-20 217.8 30.2 343 1954-2318 211-638 (1045)
142 3u4y_A Uncharacterized protein 99.7 7.2E-16 2.5E-20 183.2 28.2 235 2003-2319 4-254 (331)
143 1jmx_B Amine dehydrogenase; ox 99.7 4.8E-16 1.7E-20 184.7 26.4 259 2002-2318 5-326 (349)
144 1xfd_A DIP, dipeptidyl aminope 99.7 1.8E-16 6.2E-21 209.3 24.5 303 1955-2305 26-428 (723)
145 3vgz_A Uncharacterized protein 99.7 1.5E-15 5.3E-20 181.0 30.1 263 2000-2308 44-335 (353)
146 2ojh_A Uncharacterized protein 99.7 6.5E-16 2.2E-20 177.5 21.9 249 1963-2223 18-292 (297)
147 3hfq_A Uncharacterized protein 99.7 3E-15 1E-19 179.9 28.5 248 1999-2315 42-315 (347)
148 3o4h_A Acylamino-acid-releasin 99.7 1E-15 3.5E-20 198.2 22.8 265 1998-2317 23-315 (582)
149 2oit_A Nucleoporin 214KDA; NH2 99.6 1.1E-14 3.9E-19 183.7 25.7 193 1999-2221 39-259 (434)
150 1z68_A Fibroblast activation p 99.6 1.3E-15 4.6E-20 201.7 17.4 273 2001-2316 20-390 (719)
151 1ri6_A Putative isomerase YBHE 99.6 3.2E-14 1.1E-18 168.3 26.5 227 2010-2316 7-261 (343)
152 2z3z_A Dipeptidyl aminopeptida 99.6 1.6E-14 5.5E-19 190.7 26.4 255 1953-2221 88-419 (706)
153 3scy_A Hypothetical bacterial 99.6 3.4E-13 1.2E-17 163.2 34.8 249 1999-2316 52-336 (361)
154 3vgz_A Uncharacterized protein 99.6 2.2E-13 7.6E-18 162.4 29.8 245 1966-2223 68-334 (353)
155 1pby_B Quinohemoprotein amine 99.6 7.6E-14 2.6E-18 164.6 23.1 268 1959-2283 3-319 (337)
156 1z68_A Fibroblast activation p 99.6 2.2E-14 7.6E-19 190.0 19.3 315 1955-2318 25-444 (719)
157 3fvz_A Peptidyl-glycine alpha- 99.5 3.2E-12 1.1E-16 154.4 34.4 253 1997-2316 24-321 (329)
158 1jof_A Carboxy-CIS,CIS-muconat 99.5 3.9E-13 1.3E-17 164.3 26.5 245 1999-2317 42-341 (365)
159 2oit_A Nucleoporin 214KDA; NH2 99.5 1.1E-13 3.9E-18 174.5 22.1 184 1998-2222 94-321 (434)
160 3pe7_A Oligogalacturonate lyas 99.5 5.7E-13 1.9E-17 161.9 25.9 271 2002-2315 41-380 (388)
161 3o4h_A Acylamino-acid-releasin 99.5 1.6E-13 5.4E-18 177.7 21.2 233 2037-2315 20-274 (582)
162 4a5s_A Dipeptidyl peptidase 4 99.5 5.8E-14 2E-18 188.0 17.4 237 2001-2318 21-354 (740)
163 1q7f_A NHL, brain tumor CG1071 99.5 1.1E-11 3.8E-16 145.1 33.0 235 1997-2317 30-280 (286)
164 3hfq_A Uncharacterized protein 99.5 3.7E-12 1.3E-16 153.0 28.4 220 2017-2316 15-270 (347)
165 1jmx_B Amine dehydrogenase; ox 99.5 2.8E-12 9.4E-17 152.4 26.2 274 1955-2283 9-334 (349)
166 4a5s_A Dipeptidyl peptidase 4 99.5 2.4E-12 8.2E-17 172.4 27.1 315 1955-2317 26-449 (740)
167 3scy_A Hypothetical bacterial 99.5 2.7E-11 9.1E-16 146.6 33.2 268 1954-2295 58-360 (361)
168 2oiz_A Aromatic amine dehydrog 99.4 8.5E-12 2.9E-16 153.5 24.1 272 2016-2326 29-343 (361)
169 3c5m_A Oligogalacturonate lyas 99.4 3.5E-12 1.2E-16 154.5 19.5 257 2002-2319 41-331 (396)
170 2oiz_A Aromatic amine dehydrog 99.4 4E-11 1.4E-15 147.5 25.5 277 1965-2299 29-360 (361)
171 2dg1_A DRP35, lactonase; beta 99.4 2.3E-10 7.8E-15 136.7 31.0 229 1999-2308 47-301 (333)
172 2xdw_A Prolyl endopeptidase; a 99.4 4.2E-11 1.4E-15 159.5 26.6 245 1998-2319 126-416 (710)
173 3azo_A Aminopeptidase; POP fam 99.3 3.4E-11 1.2E-15 157.9 24.4 279 1998-2318 25-370 (662)
174 2gop_A Trilobed protease; beta 99.3 1.1E-10 3.8E-15 139.8 26.7 221 1999-2316 61-330 (347)
175 3pe7_A Oligogalacturonate lyas 99.3 2.7E-11 9.2E-16 147.1 20.7 257 1953-2221 43-369 (388)
176 3c5m_A Oligogalacturonate lyas 99.3 3.4E-11 1.2E-15 145.8 20.4 259 2002-2314 86-379 (396)
177 3e5z_A Putative gluconolactona 99.3 1.8E-10 6.2E-15 135.9 25.8 217 1999-2221 30-275 (296)
178 1rwi_B Serine/threonine-protei 99.3 2E-10 7E-15 132.5 25.4 237 1998-2317 25-264 (270)
179 1jof_A Carboxy-CIS,CIS-muconat 99.3 1.6E-10 5.5E-15 141.2 25.5 226 2011-2316 5-290 (365)
180 3azo_A Aminopeptidase; POP fam 99.3 8.7E-11 3E-15 154.0 23.2 210 2005-2218 87-350 (662)
181 1q7f_A NHL, brain tumor CG1071 99.3 4.2E-10 1.4E-14 131.7 26.6 220 1955-2219 39-267 (286)
182 2gop_A Trilobed protease; beta 99.3 3.1E-10 1.1E-14 135.9 25.6 224 2000-2316 18-290 (347)
183 2z2n_A Virginiamycin B lyase; 99.2 1E-08 3.4E-13 119.3 35.6 270 1998-2316 16-294 (299)
184 2bkl_A Prolyl endopeptidase; m 99.2 9.6E-11 3.3E-15 155.8 20.6 241 1997-2319 121-399 (695)
185 3no2_A Uncharacterized protein 99.2 2.2E-09 7.6E-14 127.6 26.4 213 2006-2305 3-231 (276)
186 1qks_A Cytochrome CD1 nitrite 99.2 5.2E-09 1.8E-13 136.9 32.1 315 1959-2319 169-540 (567)
187 2qc5_A Streptogramin B lactona 99.2 2.4E-08 8E-13 116.2 33.4 270 1998-2314 21-297 (300)
188 2dg1_A DRP35, lactonase; beta 99.2 7.5E-10 2.6E-14 132.2 21.1 231 2001-2316 10-262 (333)
189 1yr2_A Prolyl oligopeptidase; 99.2 7.5E-10 2.5E-14 148.5 23.1 243 1998-2319 164-443 (741)
190 3dsm_A Uncharacterized protein 99.2 2.6E-09 9E-14 129.3 25.2 236 2000-2316 47-301 (328)
191 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 1.8E-08 6E-13 118.7 30.7 237 1999-2316 20-298 (314)
192 3fvz_A Peptidyl-glycine alpha- 99.1 4.5E-09 1.5E-13 126.9 25.2 215 1966-2220 68-309 (329)
193 3e5z_A Putative gluconolactona 99.1 7.2E-09 2.5E-13 122.2 25.4 234 2030-2314 19-283 (296)
194 2mad_H Methylamine dehydrogena 99.1 3.4E-08 1.2E-12 122.6 31.2 290 2005-2336 29-367 (373)
195 1rwi_B Serine/threonine-protei 99.0 2.2E-08 7.6E-13 115.4 25.0 217 1955-2221 33-252 (270)
196 2z2n_A Virginiamycin B lyase; 99.0 9.9E-08 3.4E-12 110.9 30.5 237 2035-2315 11-253 (299)
197 2bkl_A Prolyl endopeptidase; m 99.0 7.9E-09 2.7E-13 137.5 22.1 216 1954-2221 129-381 (695)
198 1qks_A Cytochrome CD1 nitrite 99.0 1.2E-07 4.1E-12 124.0 32.2 229 2006-2317 165-421 (567)
199 3hrp_A Uncharacterized protein 99.0 9.6E-08 3.3E-12 119.8 29.5 239 1996-2315 130-408 (409)
200 2xdw_A Prolyl endopeptidase; a 99.0 6.8E-08 2.3E-12 128.7 29.4 222 1954-2220 133-397 (710)
201 3sjl_D Methylamine dehydrogena 98.9 9.7E-08 3.3E-12 119.0 25.9 277 2003-2319 39-365 (386)
202 3dsm_A Uncharacterized protein 98.9 1.5E-07 5.2E-12 113.8 25.5 226 2016-2319 15-255 (328)
203 3g4e_A Regucalcin; six bladed 98.9 4.6E-07 1.6E-11 107.7 28.9 222 2001-2306 17-261 (297)
204 3no2_A Uncharacterized protein 98.9 1.2E-07 4E-12 112.8 23.7 219 1956-2221 4-231 (276)
205 3iuj_A Prolyl endopeptidase; h 98.8 6.2E-08 2.1E-12 129.2 21.8 242 1997-2318 129-406 (693)
206 1xip_A Nucleoporin NUP159; bet 98.8 4.5E-08 1.5E-12 122.2 19.1 173 1998-2221 39-232 (388)
207 2qc5_A Streptogramin B lactona 98.8 9.1E-07 3.1E-11 102.8 28.6 253 1956-2220 30-289 (300)
208 3dr2_A Exported gluconolactona 98.8 6E-07 2E-11 107.0 26.3 226 2000-2311 48-301 (305)
209 3sjl_D Methylamine dehydrogena 98.8 2E-07 6.9E-12 116.2 22.6 248 2002-2297 83-384 (386)
210 3c75_H MADH, methylamine dehyd 98.8 1.6E-07 5.5E-12 118.6 21.9 288 2006-2334 82-417 (426)
211 2ghs_A AGR_C_1268P; regucalcin 98.8 3.2E-06 1.1E-10 102.2 31.2 222 2001-2307 53-292 (326)
212 2mad_H Methylamine dehydrogena 98.7 5.5E-06 1.9E-10 102.8 33.5 233 2001-2281 70-357 (373)
213 1yr2_A Prolyl oligopeptidase; 98.7 8E-07 2.7E-11 119.3 26.7 215 1955-2220 172-424 (741)
214 2qe8_A Uncharacterized protein 98.7 3.4E-07 1.2E-11 111.3 21.1 241 1999-2314 19-318 (343)
215 1mda_H Methylamine dehydrogena 98.6 3E-07 1E-11 114.1 15.5 268 2019-2336 47-362 (368)
216 1pjx_A Dfpase, DIISOPROPYLFLUO 98.6 6.6E-06 2.2E-10 96.8 25.4 179 1998-2221 72-286 (314)
217 3hrp_A Uncharacterized protein 98.6 5.4E-06 1.9E-10 104.0 25.6 223 1955-2189 140-408 (409)
218 3c75_H MADH, methylamine dehyd 98.5 3.5E-06 1.2E-10 106.6 23.5 236 2001-2281 122-409 (426)
219 3g4e_A Regucalcin; six bladed 98.5 1.4E-05 4.7E-10 95.0 26.3 211 1958-2222 26-261 (297)
220 1kb0_A Quinohemoprotein alcoho 98.5 4.4E-06 1.5E-10 111.5 23.0 152 2007-2159 127-354 (677)
221 1xip_A Nucleoporin NUP159; bet 98.4 2.8E-06 9.5E-11 106.2 18.5 182 2040-2305 39-232 (388)
222 3iuj_A Prolyl endopeptidase; h 98.4 1.1E-05 3.8E-10 107.7 24.6 216 1955-2221 138-389 (693)
223 2ghs_A AGR_C_1268P; regucalcin 98.4 3.3E-05 1.1E-09 93.3 25.9 209 1959-2222 63-291 (326)
224 2qe8_A Uncharacterized protein 98.4 1.2E-05 4.1E-10 97.8 21.8 215 1995-2221 65-309 (343)
225 1yiq_A Quinohemoprotein alcoho 98.4 2.4E-05 8.3E-10 104.6 26.7 292 2007-2319 120-507 (689)
226 3dr2_A Exported gluconolactona 98.3 2.4E-05 8E-10 93.2 21.7 213 1952-2222 51-296 (305)
227 3hxj_A Pyrrolo-quinoline quino 98.3 2.9E-05 1E-09 91.9 22.0 258 2000-2316 63-323 (330)
228 3q7m_A Lipoprotein YFGL, BAMB; 98.3 0.00019 6.4E-09 87.6 28.9 298 1957-2314 53-375 (376)
229 2ece_A 462AA long hypothetical 98.3 7.8E-05 2.7E-09 94.2 25.8 225 2003-2305 88-399 (462)
230 1mda_H Methylamine dehydrogena 98.3 2.2E-05 7.7E-10 97.5 20.8 242 2001-2296 69-366 (368)
231 1kb0_A Quinohemoprotein alcoho 98.2 0.00014 4.8E-09 97.1 26.7 301 2008-2318 77-508 (677)
232 1yiq_A Quinohemoprotein alcoho 98.2 7.3E-05 2.5E-09 100.0 23.6 41 2263-2303 494-534 (689)
233 2hz6_A Endoplasmic reticulum t 98.1 1.8E-06 6.2E-11 106.6 5.0 146 2007-2159 8-157 (369)
234 2fp8_A Strictosidine synthase; 98.0 0.00099 3.4E-08 79.9 26.0 242 2001-2316 23-312 (322)
235 1fwx_A Nitrous oxide reductase 98.0 8E-05 2.7E-09 96.9 17.4 265 2006-2323 99-437 (595)
236 3hxj_A Pyrrolo-quinoline quino 97.9 6.9E-05 2.3E-09 88.7 15.1 254 2002-2315 25-282 (330)
237 1npe_A Nidogen, entactin; glyc 97.9 0.0048 1.6E-07 71.8 29.5 224 2010-2318 3-239 (267)
238 1npe_A Nidogen, entactin; glyc 97.9 0.0053 1.8E-07 71.4 29.7 217 1999-2299 38-263 (267)
239 3q7m_A Lipoprotein YFGL, BAMB; 97.9 0.0016 5.4E-08 79.4 25.9 257 2008-2319 53-339 (376)
240 1kv9_A Type II quinohemoprotei 97.8 0.00094 3.2E-08 89.1 25.1 289 2008-2318 117-489 (668)
241 4a2l_A BT_4663, two-component 97.7 0.011 3.9E-07 79.8 33.2 218 1998-2220 216-469 (795)
242 2hz6_A Endoplasmic reticulum t 97.7 8.6E-06 2.9E-10 100.6 2.4 200 1956-2174 8-217 (369)
243 2ece_A 462AA long hypothetical 97.7 0.0023 8E-08 81.0 23.8 225 1956-2221 94-399 (462)
244 4a2l_A BT_4663, two-component 97.7 0.031 1.1E-06 75.5 36.5 215 1998-2220 358-603 (795)
245 1kv9_A Type II quinohemoprotei 97.7 0.0032 1.1E-07 84.0 25.7 33 2127-2159 306-341 (668)
246 2p4o_A Hypothetical protein; p 97.5 0.0086 2.9E-07 71.4 24.2 219 2000-2222 35-277 (306)
247 2ad6_A Methanol dehydrogenase 97.5 0.0057 1.9E-07 80.2 23.9 296 2008-2319 115-496 (571)
248 2iwa_A Glutamine cyclotransfer 97.5 0.012 4.1E-07 70.0 24.4 203 2030-2316 11-236 (266)
249 2iwa_A Glutamine cyclotransfer 97.5 0.0048 1.6E-07 73.4 21.0 176 2001-2221 25-224 (266)
250 3v9f_A Two-component system se 97.4 0.042 1.4E-06 74.1 31.9 217 1998-2219 212-466 (781)
251 1k3i_A Galactose oxidase precu 97.4 0.0073 2.5E-07 80.1 23.7 276 2001-2306 190-530 (656)
252 3nol_A Glutamine cyclotransfer 97.3 0.01 3.4E-07 70.5 21.2 175 2001-2221 47-243 (262)
253 3v9f_A Two-component system se 97.3 0.05 1.7E-06 73.4 30.8 218 1998-2220 259-512 (781)
254 1w6s_A Methanol dehydrogenase 97.3 0.021 7.1E-07 75.4 26.1 303 2002-2319 111-505 (599)
255 2ad6_A Methanol dehydrogenase 97.3 0.026 8.8E-07 74.0 26.2 41 2263-2303 483-523 (571)
256 1fwx_A Nitrous oxide reductase 97.3 0.0063 2.2E-07 79.4 20.0 133 2141-2317 174-361 (595)
257 3v64_C Agrin; beta propeller, 97.2 0.094 3.2E-06 64.2 29.5 178 2001-2221 38-221 (349)
258 2xe4_A Oligopeptidase B; hydro 97.2 0.0083 2.8E-07 81.0 21.5 114 1998-2152 175-305 (751)
259 2p4o_A Hypothetical protein; p 97.1 0.04 1.4E-06 65.6 24.2 139 2039-2221 32-185 (306)
260 3tc9_A Hypothetical hydrolase; 97.1 0.11 3.7E-06 65.7 29.0 156 1996-2191 136-301 (430)
261 1w6s_A Methanol dehydrogenase 97.1 0.029 9.7E-07 74.1 24.4 41 2262-2302 491-531 (599)
262 3v65_B Low-density lipoprotein 97.1 0.078 2.7E-06 65.9 26.9 178 2001-2221 81-264 (386)
263 3nol_A Glutamine cyclotransfer 97.1 0.027 9.4E-07 66.7 21.4 181 2041-2306 45-244 (262)
264 3nok_A Glutaminyl cyclase; bet 97.1 0.018 6.1E-07 68.5 19.7 171 2002-2221 60-253 (268)
265 1flg_A Protein (quinoprotein e 97.1 0.036 1.2E-06 72.8 24.9 41 2263-2303 505-545 (582)
266 4hw6_A Hypothetical protein, I 97.0 0.12 4E-06 65.5 28.1 154 1997-2190 139-303 (433)
267 2xbg_A YCF48-like protein; pho 97.0 0.26 8.9E-06 59.6 29.8 217 1999-2221 38-268 (327)
268 1flg_A Protein (quinoprotein e 96.9 0.1 3.4E-06 68.6 27.1 54 2263-2318 464-517 (582)
269 2fp8_A Strictosidine synthase; 96.9 0.068 2.3E-06 63.9 22.9 94 2122-2218 186-298 (322)
270 1k3i_A Galactose oxidase precu 96.9 0.078 2.7E-06 70.3 25.6 223 2001-2223 247-531 (656)
271 1ijq_A LDL receptor, low-densi 96.9 0.56 1.9E-05 56.4 30.8 168 2017-2221 9-182 (316)
272 3mbr_X Glutamine cyclotransfer 96.7 0.099 3.4E-06 61.4 22.2 175 2001-2221 25-222 (243)
273 2xe4_A Oligopeptidase B; hydro 96.7 0.026 9E-07 76.2 19.4 143 2036-2221 170-337 (751)
274 3mbr_X Glutamine cyclotransfer 96.7 0.17 5.8E-06 59.5 23.3 183 2039-2306 21-223 (243)
275 3nok_A Glutaminyl cyclase; bet 96.5 0.052 1.8E-06 64.5 17.9 177 1952-2179 60-254 (268)
276 3p5b_L Low density lipoprotein 96.5 1.2 4.2E-05 55.5 31.4 168 2017-2221 91-264 (400)
277 3v65_B Low-density lipoprotein 96.4 0.47 1.6E-05 58.8 26.8 173 1998-2210 117-296 (386)
278 3qqz_A Putative uncharacterize 96.4 0.25 8.6E-06 58.4 22.6 189 1999-2220 29-241 (255)
279 3v64_C Agrin; beta propeller, 96.4 0.45 1.5E-05 58.2 25.7 172 1999-2211 75-254 (349)
280 3sov_A LRP-6, low-density lipo 96.3 0.79 2.7E-05 55.5 27.1 166 2017-2221 12-184 (318)
281 3kya_A Putative phosphatase; s 96.1 0.75 2.6E-05 59.3 26.9 160 1997-2191 139-341 (496)
282 3p5b_L Low density lipoprotein 96.0 2.5 8.6E-05 52.7 30.1 174 1997-2210 112-298 (400)
283 3sov_A LRP-6, low-density lipo 95.9 0.89 3E-05 55.0 24.9 173 1998-2211 36-217 (318)
284 3amr_A 3-phytase; beta-propell 95.8 0.95 3.2E-05 55.9 24.6 177 2009-2221 41-250 (355)
285 3tc9_A Hypothetical hydrolase; 95.8 0.17 5.9E-06 63.8 18.4 154 2122-2316 138-300 (430)
286 1ijq_A LDL receptor, low-densi 95.7 1.6 5.4E-05 52.5 25.8 179 1999-2220 32-224 (316)
287 3qqz_A Putative uncharacterize 95.7 1.8 6.2E-05 51.1 25.4 200 2033-2314 21-250 (255)
288 3m0c_C LDL receptor, low-densi 95.6 2.8 9.4E-05 57.2 30.2 168 2017-2221 403-576 (791)
289 2p9w_A MAL S 1 allergenic prot 95.4 0.58 2E-05 57.3 20.4 147 2041-2221 15-203 (334)
290 3m0c_C LDL receptor, low-densi 95.3 2.1 7.3E-05 58.3 27.4 180 1998-2220 425-618 (791)
291 4hw6_A Hypothetical protein, I 95.2 0.71 2.4E-05 58.3 21.2 190 1997-2189 182-431 (433)
292 2xbg_A YCF48-like protein; pho 95.2 1 3.5E-05 54.4 21.6 176 2039-2220 36-222 (327)
293 3s94_A LRP-6, low-density lipo 95.0 8.7 0.0003 50.8 31.7 100 2121-2220 349-452 (619)
294 2ism_A Putative oxidoreductase 95.0 2 6.9E-05 52.5 23.8 68 1999-2069 33-114 (352)
295 2g8s_A Glucose/sorbosone dehyd 94.3 3.4 0.00012 50.6 23.5 50 1999-2049 20-76 (353)
296 2xzh_A Clathrin heavy chain 1; 94.1 15 0.0005 45.2 31.3 231 2002-2318 72-333 (365)
297 3ei3_A DNA damage-binding prot 94.1 13 0.00046 52.7 31.6 303 2009-2316 524-872 (1158)
298 3s94_A LRP-6, low-density lipo 93.9 4.3 0.00015 53.7 24.9 166 2016-2221 16-189 (619)
299 2p9w_A MAL S 1 allergenic prot 93.9 2.1 7.1E-05 52.5 19.9 191 2001-2191 17-265 (334)
300 4a0p_A LRP6, LRP-6, low-densit 93.8 14 0.00048 48.9 29.4 164 2016-2221 13-184 (628)
301 1n7d_A LDL receptor, low-densi 93.6 0.2 6.9E-06 67.2 11.6 167 2017-2220 385-557 (699)
302 2vpj_A Kelch-like protein 12; 93.5 3.8 0.00013 48.0 21.0 62 2131-2192 112-185 (301)
303 3a9g_A Putative uncharacterize 93.4 5.3 0.00018 49.0 22.9 217 1999-2220 31-329 (354)
304 3kya_A Putative phosphatase; s 93.4 2.7 9.3E-05 54.2 20.8 193 1996-2191 185-475 (496)
305 3ei3_A DNA damage-binding prot 92.6 32 0.0011 48.9 31.5 76 2143-2220 808-901 (1158)
306 3das_A Putative oxidoreductase 92.4 21 0.00072 44.0 25.9 221 1999-2221 34-326 (347)
307 3sre_A PON1, serum paraoxonase 92.2 10 0.00035 46.9 22.9 99 2121-2221 165-285 (355)
308 3amr_A 3-phytase; beta-propell 91.9 12 0.0004 46.4 22.7 132 2141-2316 98-262 (355)
309 1bpo_A Protein (clathrin); cla 91.9 35 0.0012 43.4 34.0 231 2002-2318 71-332 (494)
310 2xn4_A Kelch-like protein 2; s 91.4 8.7 0.0003 45.0 20.5 61 2131-2191 108-182 (302)
311 3ii7_A Kelch-like protein 7; p 91.3 9.9 0.00034 44.6 20.8 62 2131-2192 101-179 (306)
312 1n7d_A LDL receptor, low-densi 91.2 1.2 4E-05 59.9 14.1 192 2001-2195 410-619 (699)
313 3pbp_A Nucleoporin NUP82; beta 90.7 5.3 0.00018 50.5 18.2 116 2001-2147 70-208 (452)
314 4a0p_A LRP6, LRP-6, low-densit 88.7 75 0.0026 42.1 35.8 157 1998-2157 81-243 (628)
315 1tl2_A L10, protein (tachylect 88.1 8.8 0.0003 44.7 16.0 146 1997-2184 41-203 (236)
316 2ism_A Putative oxidoreductase 87.9 14 0.00049 45.0 19.2 58 2121-2179 268-333 (352)
317 3sre_A PON1, serum paraoxonase 87.5 18 0.00061 44.7 19.6 167 2122-2316 51-251 (355)
318 2xzh_A Clathrin heavy chain 1; 87.0 57 0.0019 40.2 22.8 186 1958-2159 78-298 (365)
319 3a9g_A Putative uncharacterize 86.8 40 0.0014 41.2 22.3 59 2121-2179 259-330 (354)
320 2vpj_A Kelch-like protein 12; 86.0 20 0.00068 41.8 18.3 62 2131-2192 159-232 (301)
321 1zgk_A Kelch-like ECH-associat 85.9 19 0.00067 42.3 18.3 61 2131-2191 121-193 (308)
322 1xi4_A Clathrin heavy chain; a 84.5 26 0.00089 50.3 20.6 186 1957-2157 76-295 (1630)
323 1xi4_A Clathrin heavy chain; a 84.0 33 0.0011 49.3 21.3 63 2002-2069 71-134 (1630)
324 2g8s_A Glucose/sorbosone dehyd 84.0 45 0.0015 40.7 20.8 64 2121-2184 271-347 (353)
325 4asc_A Kelch repeat and BTB do 83.6 55 0.0019 38.5 20.8 61 2131-2191 98-174 (315)
326 1cru_A Protein (soluble quinop 83.6 38 0.0013 43.0 20.5 102 2120-2221 26-162 (454)
327 3pbp_A Nucleoporin NUP82; beta 83.1 30 0.001 43.9 18.5 160 2002-2186 26-207 (452)
328 2be1_A Serine/threonine-protei 82.3 22 0.00075 43.7 16.9 121 2010-2161 12-140 (339)
329 1cru_A Protein (soluble quinop 81.8 30 0.001 43.9 18.6 30 2040-2069 28-57 (454)
330 3s25_A Hypothetical 7-bladed b 80.4 1E+02 0.0034 37.0 21.6 88 2127-2221 110-202 (302)
331 2xn4_A Kelch-like protein 2; s 79.7 32 0.0011 40.1 16.8 61 2131-2191 155-229 (302)
332 2woz_A Kelch repeat and BTB do 79.0 77 0.0026 37.3 19.9 62 2131-2192 109-185 (318)
333 3ii7_A Kelch-like protein 7; p 78.8 38 0.0013 39.6 17.0 62 2006-2069 54-127 (306)
334 3ott_A Two-component system se 78.0 1.9E+02 0.0066 38.5 29.8 212 1999-2219 65-295 (758)
335 3das_A Putative oxidoreductase 78.0 86 0.0029 38.6 20.2 106 2116-2221 27-158 (347)
336 1bpo_A Protein (clathrin); cla 77.5 1.7E+02 0.0057 37.5 25.5 99 1959-2069 78-188 (494)
337 2zwa_A Leucine carboxyl methyl 77.4 59 0.002 43.5 20.1 63 2130-2192 499-578 (695)
338 3s25_A Hypothetical 7-bladed b 75.9 1.4E+02 0.0048 35.7 27.0 166 2001-2221 57-241 (302)
339 1zgk_A Kelch-like ECH-associat 74.1 39 0.0013 39.7 15.4 62 2131-2192 168-241 (308)
340 3ott_A Two-component system se 68.8 3E+02 0.01 36.6 30.9 175 1998-2221 23-209 (758)
341 1zsq_A Myotubularin-related pr 68.1 29 0.00098 45.1 13.0 96 1472-1578 12-114 (528)
342 1lw3_A Myotubularin-related pr 68.0 23 0.0008 46.8 12.2 95 1472-1577 84-185 (657)
343 2uvk_A YJHT; unknown function, 66.3 58 0.002 39.0 14.8 49 2143-2191 286-342 (357)
344 2zwa_A Leucine carboxyl methyl 66.0 39 0.0013 45.2 14.4 63 2007-2070 451-523 (695)
345 2yf0_A Myotubularin-related pr 65.8 18 0.00061 46.7 10.4 80 1487-1580 22-101 (512)
346 1tl2_A L10, protein (tachylect 63.2 1.1E+02 0.0037 35.8 15.1 94 2123-2220 90-199 (236)
347 2uvk_A YJHT; unknown function, 63.0 1.2E+02 0.0041 36.1 16.7 48 2142-2189 168-224 (357)
348 1pfj_A TFIIH basal transcripti 57.9 38 0.0013 35.0 9.1 79 1472-1565 5-83 (108)
349 4asc_A Kelch repeat and BTB do 57.0 1.5E+02 0.0053 34.6 15.9 91 2131-2222 148-252 (315)
350 4hvt_A Ritya.17583.B, post-pro 56.7 2.8E+02 0.0097 37.2 20.0 30 2003-2032 136-170 (711)
351 2woz_A Kelch repeat and BTB do 44.5 2.4E+02 0.0083 32.9 14.9 61 2131-2191 158-231 (318)
352 2be1_A Serine/threonine-protei 41.1 55 0.0019 40.2 8.7 30 2132-2161 10-39 (339)
353 3qhy_B Beta-lactamase inhibito 36.4 5.8E+02 0.02 29.9 17.1 50 2017-2069 41-90 (282)
354 4gq2_M Nucleoporin NUP120; bet 36.3 1.4E+02 0.0048 41.5 12.5 38 1997-2034 236-273 (950)
355 4gq2_M Nucleoporin NUP120; bet 35.4 9.9E+02 0.034 33.1 20.7 39 2121-2159 236-274 (950)
356 3q6k_A 43.2 kDa salivary prote 23.7 1.1E+03 0.038 29.1 19.2 28 2124-2151 278-306 (381)
357 3sbq_A Nitrous-oxide reductase 22.9 1.1E+02 0.0039 40.1 7.2 68 2002-2070 328-409 (638)
358 3cxb_B Pleckstrin homology dom 21.6 3.9E+02 0.014 26.8 9.8 75 1492-1577 23-99 (112)
359 3sbq_A Nitrous-oxide reductase 21.2 3.8E+02 0.013 35.4 11.4 110 2040-2178 324-452 (638)
No 1
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=100.00 E-value=8.3e-121 Score=1109.62 Aligned_cols=404 Identities=48% Similarity=0.894 Sum_probs=371.7
Q ss_pred eEEEEeeeeEeeeeeeeEEEEEEEeeEEEEEeCCCCCCCCCCc---cccccccceEeeccceeEEeeccccCcccEEEEE
Q 000085 1474 RIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTS---ELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELF 1550 (2342)
Q Consensus 1474 kVils~~c~mVtPl~v~~G~L~IT~~~LyF~vd~~~~~~~~~~---~~~~~~k~~~~~~~~I~~i~~Rr~~l~~~alEif 1550 (2342)
.|+++++|+||+|+.+.+|+|.||+++|||+++++.+...... ........++|.+++|++|++|||+|+++|||||
T Consensus 2 ~v~~~~~~~~i~p~~~~~G~l~it~~~iyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~~Rryll~~~alEif 81 (414)
T 1t77_A 2 PVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIF 81 (414)
T ss_dssp CCSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred CEEEEEEEEEEeeecceeeEEEEeCCEEEEEeCCCcccccccccchhccccCcceEecchheeeeeeeeccCcceeEEEE
Confidence 5789999999999999999999999999999876433221111 1112335679999999999999999999999999
Q ss_pred EeCCceEEEEcCChhhHHHHHHHHHhcC------CCCCccccccccChHHHHHHHHHHHhcccCCCChHHHHHHHHHHhc
Q 000085 1551 MVDRSNFFFDFGSTEGRRNAYRAIVQAR------PPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAG 1624 (2342)
Q Consensus 1551 ~~~~~s~f~~F~~~~~~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~~~~~~~t~~W~~g~ISNFeYLm~LN~~aG 1624 (2342)
+.||++|||+|.+.+.+++++..+.... .|+...+ ....|.++++.+++|++|++|+||||||||+||++||
T Consensus 82 ~~~g~s~~l~F~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~t~~W~~g~iSNFeYLm~LN~~aG 159 (414)
T 1t77_A 82 MANRVAVMFNFPDPATVKKVVNFLPRVGVGTSFGLPQTRRI--SLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAG 159 (414)
T ss_dssp ETTSCEEEEECSSHHHHHHHHHHSCSCTTCSTTSCCCCTTT--TTCCHHHHHHHCSHHHHHHTTSSCHHHHHHHHHHHHT
T ss_pred EcCCcEEEEEcCCHHHHHHHHHhccccccccccCCcccccc--ccCCHHHHhhhhhHHHHHhcCCccHHHHHHHHHHHcC
Confidence 9999999999999877777666542110 1221112 2335788899999999999999999999999999999
Q ss_pred CCcCCCCCCcccceeccCCCCCccCCCCCCccccCCCccccCCHHHHHHHHHHhccCCCCCCCCCcccCCCCChhhHHhh
Q 000085 1625 RSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYY 1704 (2342)
Q Consensus 1625 RS~nDl~QYPVFPWIl~dy~s~~ldL~~p~~~RDLsKPiGal~~~r~~~~~~ry~~~~d~~~~~f~ygshyS~~~~V~~y 1704 (2342)
|||||++|||||||||+||+|++|||+||.+||||+|||||||++|++.|++||++++++.+|+||||+|||++++|++|
T Consensus 160 Rs~nDl~qYPVFPWVl~dy~s~~ldl~~~~~~RDLskpigaln~~r~~~~~~ry~~~~~~~~~~f~ygshyS~~~~V~~y 239 (414)
T 1t77_A 160 RSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAW 239 (414)
T ss_dssp CCSSCGGGCCCBCCCBCCCSSSSCCTTCGGGBCCTTSCHHHHCHHHHHHHHHHHHHCCCSSSCCCSBSSCSCCHHHHHHH
T ss_pred CCccccccCcccceeeccCcccccccCCccccccCCCchhhcCHHHHHHHHHHHHhhcccCCCCcccCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred hccCCCchhhhHhhhCCCCCCCCcccchHHHHHhhhhcCCCCcccccccccccccccccCCCCCcccccCCCcCCCccCC
Q 000085 1705 LFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDSVGLP 1784 (2342)
Q Consensus 1705 L~R~ePft~l~i~lQ~g~fD~~dR~F~SI~~~w~~~~~~~~dvkELIPEfFy~Pefl~N~n~~~lG~~q~g~~v~dV~LP 1784 (2342)
|+|+||||++|+.||+|+||+|||||+||.++|++|.++++|||||||||||+||||+|.|+|+||++|+|+.|+||+||
T Consensus 240 L~R~ePft~~~~~lq~g~fD~~dR~F~Si~~~w~~~~~~~~d~kElIPEFf~~Pe~l~N~n~~~lG~~~~g~~v~DV~LP 319 (414)
T 1t77_A 240 LLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELP 319 (414)
T ss_dssp HTTSTTHHHHHHHHHTSSCCCTTTSCCBHHHHHHHHHHCTTCCCCBCGGGGTCGGGGSCTTCCCCCBCTTSCBCSSCBCC
T ss_pred HhcCCcHHHHHHHHhcCCcCCCccchhhHHHHHHHHhccCCCccccCchhhcChHhhccccCCccccccCCCCCCceeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchhhhhcCccccccccccccccccCCCHHHHHHHHHHHHHc
Q 000085 1785 PWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYF 1864 (2342)
Q Consensus 1785 ~Wa~~p~~FI~~~R~aLES~~VS~~Lh~WIDLIFGyKQ~G~~Av~a~Nvf~~~tY~~~vd~~~i~d~~~~~~~~~~i~~f 1864 (2342)
|||++|++||++||+||||+|||+|||+||||||||||+|++|++|.|||||+||+|.||++.++||.+|.++++||.||
T Consensus 320 ~Wa~sp~~FI~~~R~aLES~~VS~~Lh~WIDLiFGykq~G~~Av~a~Nvf~~ltY~~~vd~~~i~d~~~~~a~~~~i~~f 399 (414)
T 1t77_A 320 PWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSF 399 (414)
T ss_dssp TTCSSHHHHHHHHHHHHHSHHHHTTHHHHHHHHTSTTSSHHHHHHHTCCBCGGGSTTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcChHhhhhhhhhhhhhcCcccCCHHHHhcCCccccceecCcccccccCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCCCC
Q 000085 1865 GQTPSQLLTVPHMKK 1879 (2342)
Q Consensus 1865 Gq~P~QLF~~pHp~R 1879 (2342)
||||.|||++|||+|
T Consensus 400 GQ~P~QLF~~pHP~R 414 (414)
T 1t77_A 400 GQTPSQLLIEPHPPR 414 (414)
T ss_dssp CCCCCCCCSSCCCCC
T ss_pred CCChhhhhcCCCCCC
Confidence 999999999999998
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.2e-33 Score=361.09 Aligned_cols=309 Identities=15% Similarity=0.141 Sum_probs=247.7
Q ss_pred cceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 1996 IRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1996 I~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
...+.+++|+|++. .|++|+.|++|++||..++++..++.+|.+.|++++|+|||++|+||+.|++|++||+.++....
T Consensus 147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 226 (611)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEee
Confidence 34567799999997 69999999999999999999999999999999999999999999999999999999998876655
Q ss_pred cccc------CCCCCCccccccCCCCCceeecCCCc-cccccCC------------------------------------
Q 000085 2075 TGTI------EPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG------------------------------------ 2111 (2342)
Q Consensus 2075 t~~~------~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~------------------------------------ 2111 (2342)
.+.. .|...+.+++|+|+|..+++++.|+. +.|+...
T Consensus 227 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i 306 (611)
T 1nr0_A 227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 306 (611)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence 4422 67889999999999999999998865 4465421
Q ss_pred ---------ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe-----------------------
Q 000085 2112 ---------PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV----------------------- 2159 (2342)
Q Consensus 2112 ---------~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~----------------------- 2159 (2342)
....+.+|...|++++|+|+++++++++.||+|++||+.+++....+.
T Consensus 307 ~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~ 386 (611)
T 1nr0_A 307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW 386 (611)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEET
T ss_pred EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEc
Confidence 123557899999999999999999999999999999998775533210
Q ss_pred -------------------------------------------------------------cCCcEEEEEecCCcEEEEE
Q 000085 2160 -------------------------------------------------------------GVDAHAVSLSSEGVIMTWN 2178 (2342)
Q Consensus 2160 -------------------------------------------------------------gh~vssLSfSpDG~IlVwd 2178 (2342)
...+.+++|+|||++++.+
T Consensus 387 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasg 466 (611)
T 1nr0_A 387 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVG 466 (611)
T ss_dssp TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred CCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEe
Confidence 0113578899999999999
Q ss_pred eCCCeEEEEEeCCceee-eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCC--------------CCCC
Q 000085 2179 KLQHTLSSFTLNGVLVA-RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNS--------------KQSG 2243 (2342)
Q Consensus 2179 ssdGsI~I~dlnG~~L~-s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~--------------~~~~ 2243 (2342)
..++.|++|++.+..+. .....|...|++++|+|||++|++++.|+.. ++|+... ....
T Consensus 467 s~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v------~~w~~~~~~~~~~~~~~~~H~~~V~ 540 (611)
T 1nr0_A 467 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKV------IPYSVANNFELAHTNSWTFHTAKVA 540 (611)
T ss_dssp ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCE------EEEEGGGTTEESCCCCCCCCSSCEE
T ss_pred CCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCE------EEEEcCCCCceeeeeeeeeccccee
Confidence 99999999999765432 1124599999999999999999999988773 3444332 1123
Q ss_pred ccccccccccccCCCCccCCCCeEEEEECCCCe-EE-EEEecCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2244 TEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK-VF-HVLKLGE-GQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2244 ~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk-~L-~tL~lgH-s~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
.+.|+|+...... +..|++|++||+.++. .+ ..+. +| ...|++++|+|+++ |++|+.||+|++|+++
T Consensus 541 ~v~fspdg~~las----gs~D~~v~lW~~~~~~~~~~~~~~-~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 541 CVSWSPDNVRLAT----GSLDNSVIVWNMNKPSDHPIIIKG-AHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEECTTSSEEEE----EETTSCEEEEETTCTTSCCEEETT-SSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEEECCCCCEEEE----EECCCcEEEEECCCcccccchhhc-cCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 3466666543322 3359999999998865 33 3444 88 89999999999998 9999999999999953
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.4e-32 Score=338.60 Aligned_cols=276 Identities=15% Similarity=0.186 Sum_probs=248.5
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
..+.+++|+|++.+|++|+.||+|+|||+.+++...++.+|.+.|++++|+|++++|+||+.|++|++||+.++.+..++
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~ 188 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999887665544
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
..|...+.++.++|++..+++++.|+. ..|+. ..++..+.+|...|.+++|++++.++++|+.||+|++||+++++
T Consensus 189 -~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~ 267 (410)
T 1vyh_C 189 -HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 267 (410)
T ss_dssp -CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred -cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 567788999999999999999998875 44665 45678899999999999999999999999999999999999999
Q ss_pred EEEEEecCC--cEEEEEecC--------------------CcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEc
Q 000085 2154 LIRRLVGVD--AHAVSLSSE--------------------GVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEIS 2211 (2342)
Q Consensus 2154 lIrsL~gh~--vssLSfSpD--------------------G~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafS 2211 (2342)
+...+.+|. +.+++|+|+ |.+++.+..++.|++|++..........+|...|++++|+
T Consensus 268 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~ 347 (410)
T 1vyh_C 268 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 347 (410)
T ss_dssp EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEc
Confidence 999998775 788999986 6789999999999999997554444455699999999999
Q ss_pred cCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEE
Q 000085 2212 LDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITA 2291 (2342)
Q Consensus 2212 PDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~Its 2291 (2342)
|+|++|++|+. |+.|++||+.+++++.++. +|...|++
T Consensus 348 ~~g~~l~s~s~-----------------------------------------D~~i~vwd~~~~~~~~~~~-~h~~~v~~ 385 (410)
T 1vyh_C 348 SGGKFILSCAD-----------------------------------------DKTLRVWDYKNKRCMKTLN-AHEHFVTS 385 (410)
T ss_dssp SSSSCEEEEET-----------------------------------------TTEEEEECCTTSCCCEEEE-CCSSCEEE
T ss_pred CCCCEEEEEeC-----------------------------------------CCeEEEEECCCCceEEEEc-CCCCcEEE
Confidence 99999999973 7889999999999999998 99999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2292 LALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2292 LafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
++|+|++.+|++|+.||+|+||+.
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999984
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=322.40 Aligned_cols=278 Identities=14% Similarity=0.129 Sum_probs=243.0
Q ss_pred cceeEEEEEcCC----CCEEEEEEcCCcEEEEecCCccc--ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 1996 IRSSAVVSITHD----KEIITGGHVDGSIKLLTSDGAKT--LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 1996 I~Svt~VafSpD----GklLASGS~DGsIrVWDl~tgkl--l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
...|.+++|+|+ +.+|++|+.|++|+||++.+++. ...+.+|...|++++|++++.+++||+.|++|++||+.+
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~ 111 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN 111 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 345667999875 56999999999999999987653 456899999999999999999999999999999999998
Q ss_pred CccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2070 AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2070 g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrI 2146 (2342)
+...... ..+...+..++++|+++.++++..++. ..|+. ......+..|...|.+++|+|+++++++|+.||+|++
T Consensus 112 ~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~i 190 (321)
T 3ow8_A 112 GKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINI 190 (321)
T ss_dssp TEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEE
Confidence 7665544 345567888999999999999988765 34554 4556778889999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2147 HSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2147 WDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
||+++++.+..+.+|. +..++|+|+|.+++.+..++.|++|++...........|...|.+++|+|+|.+|++|+.
T Consensus 191 wd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~-- 268 (321)
T 3ow8_A 191 FDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS-- 268 (321)
T ss_dssp EETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred EECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC--
Confidence 9999999999998875 789999999999999999999999999765555555669999999999999999999973
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS 2304 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG 2304 (2342)
|++|+|||+.+++++.++. +|...|++++|+|++++|+++
T Consensus 269 ---------------------------------------D~~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 269 ---------------------------------------DKSVKVWDVGTRTCVHTFF-DHQDQVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp ---------------------------------------TSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEE
T ss_pred ---------------------------------------CCcEEEEeCCCCEEEEEEc-CCCCcEEEEEECCCCCEEEEE
Confidence 6779999999999999998 899999999999999999999
Q ss_pred eCCCcEEEEeCC
Q 000085 2305 TADKQLIVFTDP 2316 (2342)
Q Consensus 2305 SsDGsIrVWDi~ 2316 (2342)
+.||.|++||.|
T Consensus 309 ~~d~~i~vwd~p 320 (321)
T 3ow8_A 309 GDDQEIHIYDCP 320 (321)
T ss_dssp ETTCCEEEEECC
T ss_pred eCCCeEEEEeCC
Confidence 999999999964
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.5e-31 Score=321.65 Aligned_cols=274 Identities=14% Similarity=0.166 Sum_probs=238.7
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc---
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR--- 2074 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~--- 2074 (2342)
.+.+++|+||+++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|++|++|++.+.....
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~ 136 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS 136 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999998753211
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCC-cccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADK-SRRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
.....|...+.++.+++++. +++++.|+ +..|+. ...+..+.+|.+.|++++|+|++.++++|+.||+|++||+++
T Consensus 137 ~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~ 215 (340)
T 1got_B 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215 (340)
T ss_dssp EEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 12456777888889988876 55555555 455765 456788899999999999999999999999999999999999
Q ss_pred CeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCc-eeeeecC-CCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2152 GRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGV-LVARAKL-PLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2152 GklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~-~L~s~~~-~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
+.++..+.+|. +..++|+|+|.+++.+..++.+++|++... .+..... .+...|++++|+|+|+++++|+.
T Consensus 216 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----- 290 (340)
T 1got_B 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----- 290 (340)
T ss_dssp CSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET-----
T ss_pred CeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC-----
Confidence 99999998875 789999999999999999999999999743 3333221 14458999999999999999973
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
|+.|++||+.+++.+..+. +|...|++++|+|+|.+|++|+.|
T Consensus 291 ------------------------------------d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 291 ------------------------------------DFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp ------------------------------------TSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETT
T ss_pred ------------------------------------CCeEEEEEcccCcEeeEee-cCCCcEEEEEEcCCCCEEEEEcCC
Confidence 6789999999999999998 999999999999999999999999
Q ss_pred CcEEEEe
Q 000085 2308 KQLIVFT 2314 (2342)
Q Consensus 2308 GsIrVWD 2314 (2342)
|.|+||+
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.5e-31 Score=337.90 Aligned_cols=334 Identities=20% Similarity=0.269 Sum_probs=273.9
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
.++|..+++++.|+.+++|+... .....+..|. ..+.+++|+|+++.|++|+.|+.|++|+. +++.+..
T Consensus 230 s~dg~~l~~~~~d~~i~~w~~~~-------~~~~~~~~~~---~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~ 298 (577)
T 2ymu_A 230 SPDGQTIASASDDKTVKLWNRNG-------QLLQTLTGHS---SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQT 298 (577)
T ss_dssp CTTSSCEEEEETTSCEEEECTTS-------CEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEE
T ss_pred CCCCCEEEEEeCCCEEEEEeCCC-------CEEEEEecCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEE
Confidence 35778899999999999998432 1122233333 34567999999999999999999999996 4677888
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc-CC
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI-EG 2111 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i-~~ 2111 (2342)
+.+|...|++++|+|++++|++++.|++|++||...... .. ...+...+.+++++|++..++++..++. ..|+. ..
T Consensus 299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~ 376 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 376 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE-EE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC
T ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee-EE-EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC
Confidence 999999999999999999999999999999999876432 22 3456778889999999999999988875 44654 34
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
.+..+.+|...|++++|+|+++++++++.|++|++||. +++.+..+.+|. +..++|+||+.+++.+..++.+++|+.
T Consensus 377 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~ 455 (577)
T 2ymu_A 377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR 455 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 57788999999999999999999999999999999995 678888888875 688999999999999999999999999
Q ss_pred CCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC----------CCCccccccccccccCCCC
Q 000085 2190 NGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK----------QSGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2190 nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~----------~~~~iaFspd~~~s~ss~~ 2259 (2342)
++..+.. ...|...|++++|+|||++|++++.++. .++|+.... ....+.|+++.... .
T Consensus 456 ~~~~~~~-~~~~~~~v~~~~~spd~~~las~~~d~~------i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l----~ 524 (577)
T 2ymu_A 456 NGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKT------VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI----A 524 (577)
T ss_dssp TSCEEEE-EECCSSCEEEEEECTTSCEEEEEETTSE------EEEEETTSCEEEEEECCSSCEEEEEECTTSSCE----E
T ss_pred CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCE------EEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEE----E
Confidence 8866554 3459999999999999999999998776 344543221 12334566554322 2
Q ss_pred ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2260 FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2260 ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
.+..|+.|++||. +++++.++. +|...|++++|+|||++|++++.||+|++||
T Consensus 525 s~~~dg~v~lwd~-~~~~~~~~~-~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 525 SASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECcCEEEEEeC-CCCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 2346999999996 788899998 9999999999999999999999999999997
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.98 E-value=1.1e-30 Score=341.62 Aligned_cols=311 Identities=14% Similarity=0.057 Sum_probs=256.0
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc-ccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT-GTI 2078 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t-~~~ 2078 (2342)
.+++|+|||++|++++ +++|+||++.+++....+.+|.+.|++++|+|||++|+||+.|++|+|||+.++..... ...
T Consensus 22 ~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~ 100 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 100 (611)
T ss_dssp CCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE
T ss_pred eEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec
Confidence 3489999999999987 67999999999999999999999999999999999999999999999999976443222 234
Q ss_pred CCCCCCccccccCCCCCceeecCCC-----ccccccCCceEEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCC
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADK-----SRRRRIEGPIHVLRGHHREILCCCVSSDLG-VVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~-----s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~-lLaSGS~DGtIrIWDLrTG 2152 (2342)
.+...+.+++|+|+|+.+++++.+. +..|+.......+.+|...|++++|+|++. .+++|+.|++|++||..++
T Consensus 101 ~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~ 180 (611)
T 1nr0_A 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 180 (611)
T ss_dssp CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred ccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence 5778899999999999998877542 456887778888999999999999999986 6999999999999999999
Q ss_pred eEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecC------CCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2153 RLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKL------PLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2153 klIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~------~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
+++.++.+|. +..++|+|||.+++.+..++.+++|++. +..+..... .|.+.|.+++|+|+|++|++|+.|
T Consensus 181 ~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D 260 (611)
T 1nr0_A 181 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 260 (611)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT
T ss_pred eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC
Confidence 9999999885 7899999999999999999999999975 444433322 599999999999999999999988
Q ss_pred CCCCCCCcccccccCCCCCCc-cccc----c---ccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGT-EDFD----L---ASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN 2295 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~-iaFs----p---d~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS 2295 (2342)
+. .++|++....... +... . ..............|+.|++||..++++...+. +|...|++++|+
T Consensus 261 ~~------v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~-gh~~~v~~l~~s 333 (611)
T 1nr0_A 261 KT------IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY-GHNKAITALSSS 333 (611)
T ss_dssp SE------EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC-CCSSCEEEEEEC
T ss_pred Ce------EEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc-CCCCCEEEEEEe
Confidence 77 5677765432110 0000 0 000011112223469999999999999888877 999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2296 KDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2296 PDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|||++|++++.||+|++||....
T Consensus 334 pdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 334 ADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCEEEEEeCCCcEEEEECCCC
Confidence 99999999999999999997654
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.98 E-value=7.8e-31 Score=320.59 Aligned_cols=279 Identities=16% Similarity=0.151 Sum_probs=216.0
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCccccccc-c-eeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPR-A-LAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~-s-ls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~ 2032 (2342)
++|+.+++++ |.++|+|++...........+. . ..........+.+++|+|++ .|++|+.||+|+|||+.+++.+.
T Consensus 40 ~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~ 117 (344)
T 4gqb_B 40 SDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLI 117 (344)
T ss_dssp TTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE
T ss_pred CCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee
Confidence 4667777766 5678888643200000000000 0 00000111246779999986 57788999999999999987654
Q ss_pred e----cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2033 T----ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2033 t----L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
. +.+|.+.|++++|+|+|++|+||+.|++|++||+.++
T Consensus 118 ~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-------------------------------------- 159 (344)
T 4gqb_B 118 VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-------------------------------------- 159 (344)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------------------------------------
T ss_pred EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------------------------------------
Confidence 4 4589999999999999999999999999999999875
Q ss_pred cCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEEEEec----CCcEEEEEecC-CcEEEEEeCCC
Q 000085 2109 IEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRGRLIRRLVG----VDAHAVSLSSE-GVIMTWNKLQH 2182 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTGklIrsL~g----h~vssLSfSpD-G~IlVwdssdG 2182 (2342)
.++..+.+|.+.|++++|++++ .++++|+.||+|++||+++++.+..+.. +.+..++++|+ +.+++.+..++
T Consensus 160 --~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 160 --VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp --EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred --cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 2355678999999999999987 5789999999999999999998887643 24678999985 57888899999
Q ss_pred eEEEEEeCCceeeeecCCCCCCeEEEEEccCC-CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCcc
Q 000085 2183 TLSSFTLNGVLVARAKLPLSGSIGCMEISLDG-HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFD 2261 (2342)
Q Consensus 2183 sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDG-k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ia 2261 (2342)
.|++|++...........|...|++++|+|+| ++|++|+.
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~--------------------------------------- 278 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE--------------------------------------- 278 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEET---------------------------------------
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeC---------------------------------------
Confidence 99999997544444445699999999999998 57888873
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCC
Q 000085 2262 FPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNT-NLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2262 s~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~-~LaSGSsDGsIrVWDi~sL 2318 (2342)
|++|+|||+.+++++ .+. +|...|++++|+|++. .|++|+.||+|++|+++..
T Consensus 279 --D~~i~vwd~~~~~~~-~~~-~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 279 --DCSLAVLDSSLSELF-RSQ-AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp --TSCEEEECTTCCEEE-EEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred --CCeEEEEECCCCcEE-EEc-CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 678999999999865 455 8999999999999986 5678999999999997654
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=6.3e-30 Score=312.10 Aligned_cols=275 Identities=15% Similarity=0.177 Sum_probs=240.1
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc----
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS---- 2073 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i---- 2073 (2342)
.+.+++|+|++++|++|+.||+|+|||..+++....+..|...|.+++|+|+|.+|++|+.|+++++|++......
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~ 145 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAA 145 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGG
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccc
Confidence 4667999999999999999999999999999999999999999999999999999999999999999998753211
Q ss_pred -cccccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEec--CCCEEEEEeCCCcEEEE
Q 000085 2074 -RTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSS--DLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2074 -~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSP--Dg~lLaSGS~DGtIrIW 2147 (2342)
......|...+.++.|++++..+++++.|+. ..|++ ...+..+.+|...|.+++|+| ++.++++|+.||+|++|
T Consensus 146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 1113457788899999999999999988875 45765 456788999999999999987 47899999999999999
Q ss_pred ECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC--CCCCeEEEEEccCCCEEEEEeCC
Q 000085 2148 SIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP--LSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2148 DLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~--Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
|+++++++..+.+|. +..++|+|+|..++.+..++.+++|++........... +...+.+++|+|+|.++++|+.
T Consensus 226 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~- 304 (354)
T 2pbi_B 226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN- 304 (354)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC-
Confidence 999999999998875 78999999999999999999999999975432222221 4457999999999999999973
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEE
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaS 2303 (2342)
|+.|++||+.+++.+..+. +|...|++++|+|||++|++
T Consensus 305 ----------------------------------------d~~i~vwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~s 343 (354)
T 2pbi_B 305 ----------------------------------------DYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDGTAFCS 343 (354)
T ss_dssp ----------------------------------------TSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSCEEE
T ss_pred ----------------------------------------CCcEEEEECCCCceEEEEE-CCCCcEEEEEECCCCCEEEE
Confidence 6779999999999999888 99999999999999999999
Q ss_pred EeCCCcEEEEe
Q 000085 2304 STADKQLIVFT 2314 (2342)
Q Consensus 2304 GSsDGsIrVWD 2314 (2342)
|+.||+|+||+
T Consensus 344 gs~D~~v~vW~ 354 (354)
T 2pbi_B 344 GSWDHTLRVWA 354 (354)
T ss_dssp EETTSEEEEEC
T ss_pred EcCCCCEEecC
Confidence 99999999996
No 10
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.97 E-value=7.2e-30 Score=326.74 Aligned_cols=356 Identities=20% Similarity=0.274 Sum_probs=282.4
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
.+++..+++++.|+.+++|+... .....+..|.. .+.+++|+|++++|++|+.|+.|++||. +++.+..
T Consensus 189 ~~~~~~l~~~~~d~~v~~w~~~~-------~~~~~~~~~~~---~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~ 257 (577)
T 2ymu_A 189 SPDGQTIASASDDKTVKLWNRNG-------QLLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 257 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECTTS-------CEEEEEECCSS---CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEE
T ss_pred cCCCCEEEEEcCCCEEEEEeCCC-------cEEEEEecCCC---CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEE
Confidence 45788899999999999998432 11223333443 4566999999999999999999999996 4678888
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccccC-C
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE-G 2111 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~-~ 2111 (2342)
+.+|...|++++|+|+++.|++++.|++|++||.... ... ....+...+..++++|++..++++..++. ..|+.. .
T Consensus 258 ~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~-~~~-~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~ 335 (577)
T 2ymu_A 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 335 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE-EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC
T ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-EEE-EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence 9999999999999999999999999999999997542 222 23567788999999999999999888875 457653 4
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
.+..+.+|...|++++|+|++.++++|+.||+|++||. +++.+..+.+|. +..++|+|||+.++.+..++.+++|+.
T Consensus 336 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~ 414 (577)
T 2ymu_A 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 414 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 56788999999999999999999999999999999995 778888888765 788999999999999999999999998
Q ss_pred CCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC----------CCCccccccccccccCCCC
Q 000085 2190 NGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK----------QSGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2190 nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~----------~~~~iaFspd~~~s~ss~~ 2259 (2342)
++..+.. ...|...|++++|+||++++++++.++. ..+|+.... ....+.|+++.....
T Consensus 415 ~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~d~~------v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~la---- 483 (577)
T 2ymu_A 415 NGQLLQT-LTGHSSSVWGVAFSPDDQTIASASDDKT------VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIA---- 483 (577)
T ss_dssp TCCEEEE-EECCSSCEEEEEECTTSSEEEEEETTSE------EEEEETTSCEEEEEECCSSCEEEEEECTTSCEEE----
T ss_pred CCCEEEE-ecCCCCCeEEEEECCCCCEEEEEcCCCE------EEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEE----
Confidence 8766543 3459999999999999999999998776 344543321 122335555543222
Q ss_pred ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCChhhh----hhhhhccccCCC
Q 000085 2260 FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALSLKVV----DQMLKLGWEGDG 2335 (2342)
Q Consensus 2260 ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs~k~L----dQLLk~GWegDG 2335 (2342)
.+..|+.|++||. +++++..+. +|...|++++|+|||++|++++.||.|++||.++.....+ .......|.+||
T Consensus 484 s~~~d~~i~iw~~-~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg 561 (577)
T 2ymu_A 484 SASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG 561 (577)
T ss_dssp EEETTSEEEEEET-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEeCCCEEEEEcC-CCCEEEEEe-CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCC
Confidence 2336999999995 788889998 9999999999999999999999999999999643221111 122344577776
Q ss_pred c
Q 000085 2336 L 2336 (2342)
Q Consensus 2336 L 2336 (2342)
-
T Consensus 562 ~ 562 (577)
T 2ymu_A 562 Q 562 (577)
T ss_dssp S
T ss_pred C
Confidence 4
No 11
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-29 Score=308.65 Aligned_cols=315 Identities=15% Similarity=0.174 Sum_probs=252.4
Q ss_pred cCCC-eEEecCCCceEEEecC----CCCCCCccccccc--ceec----c---ccCcceeEEEEEcCCCCEEEEEEcCCcE
Q 000085 1955 QHGK-ASASPASGTFLRMFKG----PGGSGADEWHFPR--ALAF----A---SSGIRSSAVVSITHDKEIITGGHVDGSI 2020 (2342)
Q Consensus 1955 ~~Gk-~LaSsSsD~tIRVwdg----~tgs~~~ew~~p~--sls~----h---s~gI~Svt~VafSpDGklLASGS~DGsI 2020 (2342)
++|. .+++++.|+.+++|+. .++.. .|.... .+.. + ..+...+.+++|+|++++|++|+.||.|
T Consensus 55 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 132 (425)
T 1r5m_A 55 PLDESILAYGEKNSVARLARIVETDQEGKK--YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGEL 132 (425)
T ss_dssp SSCTTEEEEEETBTEEEEEEEEEC--------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCcEEEEecCCceEEEEEEecccCCccc--cccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeE
Confidence 4577 8899999999999997 55321 011110 1111 0 0123367789999999999999999999
Q ss_pred EEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCC---------------Cc
Q 000085 2021 KLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSG---------------MG 2085 (2342)
Q Consensus 2021 rVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~---------------V~ 2085 (2342)
++|| .+++.+..+.+|...|++++|+|++++|++++.|++|++||+.++........ +... +.
T Consensus 133 ~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 210 (425)
T 1r5m_A 133 RLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL-KETGGSSINAENHSGDGSLGV 210 (425)
T ss_dssp EEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECC-C---------------CCCBS
T ss_pred EEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeec-cccCccceeeccccCCcceee
Confidence 9999 67788889999999999999999999999999999999999988765554421 2222 78
Q ss_pred cccccCCCCCceeecCCCcccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-
Q 000085 2086 TPGNSIGSSTPANASADKSRRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD- 2162 (2342)
Q Consensus 2086 svs~SpDG~~Las~s~D~s~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~- 2162 (2342)
++.+++++..++.+....+..|+. ...+..+.+|...|++++|+|++.++++++.||.|++||+++++.+..+..|.
T Consensus 211 ~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 290 (425)
T 1r5m_A 211 DVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ 290 (425)
T ss_dssp CCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSS
T ss_pred EEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCc
Confidence 888888876444444444455654 45677888999999999999999999999999999999999999888887654
Q ss_pred -cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCC
Q 000085 2163 -AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ 2241 (2342)
Q Consensus 2163 -vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~ 2241 (2342)
+..++++++| .++.+..++.+++|++...........|...|.+++|+|+|+++++|+.
T Consensus 291 ~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------------------- 350 (425)
T 1r5m_A 291 SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM------------------- 350 (425)
T ss_dssp CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET-------------------
T ss_pred cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC-------------------
Confidence 7899999999 8888889999999999755554445568899999999999999999873
Q ss_pred CCccccccccccccCCCCccCCCCeEEEEECCCCe--------------------EEEEEecCCCC--CeEEEEEecCCC
Q 000085 2242 SGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK--------------------VFHVLKLGEGQ--DITALALNKDNT 2299 (2342)
Q Consensus 2242 ~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk--------------------~L~tL~lgHs~--~ItsLafSPDG~ 2299 (2342)
||.|++||+.+++ ++..+. +|.. .|++++|+|+++
T Consensus 351 ----------------------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~ 407 (425)
T 1r5m_A 351 ----------------------DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQDNDYIFDLSWNCAGN 407 (425)
T ss_dssp ----------------------TSCEEEEECHHHHC--------------CEECCEEEEEC-CTTCCCCEEEEEECTTSS
T ss_pred ----------------------CCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-CcccCCceEEEEccCCCc
Confidence 5668888888777 888888 7765 999999999999
Q ss_pred EEEEEeCCCcEEEEeCC
Q 000085 2300 NLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2300 ~LaSGSsDGsIrVWDi~ 2316 (2342)
+|++++.||.|++|+++
T Consensus 408 ~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 408 KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEEESSSCCEEEECC
T ss_pred eEEEEecCceEEEEeec
Confidence 99999999999999965
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=1.1e-29 Score=312.11 Aligned_cols=280 Identities=15% Similarity=0.175 Sum_probs=235.6
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc-----
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT----- 2072 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~----- 2072 (2342)
.|.+++|+|++++|++|+.||+|+|||+.+++....+.+|...|.+++|+|+|++|++|+.|++|++||+.+...
T Consensus 68 ~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~ 147 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNM 147 (380)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSS
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCc
Confidence 456799999999999999999999999999999999999999999999999999999999999999999975321
Q ss_pred -ccccccCCCCCCccccccCCC-CCceeecCCCc-cccccC--CceEEe-----cCCCCCeEEEEEec-CCCEEEEEeCC
Q 000085 2073 -SRTGTIEPSSGMGTPGNSIGS-STPANASADKS-RRRRIE--GPIHVL-----RGHHREILCCCVSS-DLGVVVSCSDS 2141 (2342)
Q Consensus 2073 -i~t~~~~~~~~V~svs~SpDG-~~Las~s~D~s-~~~~i~--~~l~~L-----~GHs~~Vt~VafSP-Dg~lLaSGS~D 2141 (2342)
......+|...+..+.+.|++ ..+++++.|+. ..|++. ..+..+ .+|...|.+++|++ ++.++++|+.|
T Consensus 148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D 227 (380)
T 3iz6_a 148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD 227 (380)
T ss_dssp TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT
T ss_pred cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC
Confidence 112245677888899999875 45788888765 457664 344444 68999999999987 78999999999
Q ss_pred CcEEEEECC-CCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCc-eeeeecCC------CCCCeEEEEEc
Q 000085 2142 SDLLLHSIR-RGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGV-LVARAKLP------LSGSIGCMEIS 2211 (2342)
Q Consensus 2142 GtIrIWDLr-TGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~-~L~s~~~~------Hs~~ItsLafS 2211 (2342)
|+|++||++ ++..++.+.+|. +..++|+|+|..++.+..++.+++|++... .+...... +...|++++|+
T Consensus 228 ~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 228 TTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS 307 (380)
T ss_dssp SCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred CeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence 999999998 567888888875 789999999999999999999999999743 33322211 22358999999
Q ss_pred cCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEe---cCCCCC
Q 000085 2212 LDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLK---LGEGQD 2288 (2342)
Q Consensus 2212 PDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~---lgHs~~ 2288 (2342)
|+|+++++|+. ||.|++||+.+++.+..+. .+|...
T Consensus 308 ~~g~~l~~g~~-----------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~h~~~ 346 (380)
T 3iz6_a 308 ISGRLLFAGYS-----------------------------------------NGDCYVWDTLLAEMVLNLGTLQNSHEGR 346 (380)
T ss_dssp SSSSEEEEECT-----------------------------------------TSCEEEEETTTCCEEEEECCSCSSCCCC
T ss_pred CCCCEEEEEEC-----------------------------------------CCCEEEEECCCCceEEEEecccCCCCCc
Confidence 99999999862 6789999999999888772 379999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2289 ITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2289 ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|++++|+|||.+|++|+.||+|++|+..+.
T Consensus 347 v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 347 ISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred eEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999999997654
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=2.1e-29 Score=305.65 Aligned_cols=280 Identities=15% Similarity=0.171 Sum_probs=224.4
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc--ccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA--KTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg--kll~ 2032 (2342)
++|+.+++++.|++|++|+..++ .+.. ......++...+.+++|+|+|++|++|+.|++|+||++.++ +++.
T Consensus 26 p~g~~las~~~D~~i~iw~~~~~----~~~~--~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~ 99 (345)
T 3fm0_A 26 PAGTLLASCGGDRRIRIWGTEGD----SWIC--KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVT 99 (345)
T ss_dssp TTSSCEEEEETTSCEEEEEEETT----EEEE--EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEE
T ss_pred CCCCEEEEEcCCCeEEEEEcCCC----ccee--eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEE
Confidence 46788999999999999986542 1110 11111234456777999999999999999999999998876 4577
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
++.+|.+.|++++|+|++++|+||+.|++|++||+..+.. ...
T Consensus 100 ~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~-------------------------------------~~~ 142 (345)
T 3fm0_A 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE-------------------------------------YEC 142 (345)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC-------------------------------------EEE
T ss_pred EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC-------------------------------------eEE
Confidence 8999999999999999999999999999999999976421 023
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe--EEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR--LIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk--lIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
+..+.+|...|++++|+|++.++++|+.||+|++||++++. +..++.+|. +..++|+|+|.+++.+..++.|++|+
T Consensus 143 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 45678899999999999999999999999999999998886 456777775 78999999999999999999999998
Q ss_pred eC--Cc--------------eeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccc
Q 000085 2189 LN--GV--------------LVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASD 2252 (2342)
Q Consensus 2189 ln--G~--------------~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~ 2252 (2342)
.. +. .+......|...|++++|++++..+++++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~------------------------------ 272 (345)
T 3fm0_A 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG------------------------------ 272 (345)
T ss_dssp EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET------------------------------
T ss_pred cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC------------------------------
Confidence 62 10 111111228889999999999999999873
Q ss_pred cccCCCCccCCCCeEEEEECCCCe--------EEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCC
Q 000085 2253 QSVDNNRFDFPSPSICFLDLHTLK--------VFHVLKLGEGQDITALALNKDN-TNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2253 ~s~ss~~ias~DGsIrIWDL~Tgk--------~L~tL~lgHs~~ItsLafSPDG-~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|+.|++|+..... .......+|...|++++|+|++ .+|++|+.||+|++|+....
T Consensus 273 -----------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 273 -----------DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp -----------TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred -----------CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 5668888876532 2222333899999999999998 59999999999999997655
No 14
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=1.5e-29 Score=301.29 Aligned_cols=275 Identities=11% Similarity=0.061 Sum_probs=236.5
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
.+.+++|+|++++|++|+.||+|+|||+.+++.+..+.+|..+|.+++|+|++++|++|+.|++|++||+.++.....+
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~- 93 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF- 93 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE-
Confidence 3566999999999999999999999999999999999999999999999999999999999999999999988665543
Q ss_pred cCCCCCCccccccCCCCCceeecCCCc-cccccCC---ceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG---PIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~---~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
..|...+.+++++|++..+++++.|+. ..|+... ....+.+|...|++++|+| ++.++++|+.||+|++||++++
T Consensus 94 ~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~ 173 (304)
T 2ynn_A 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (304)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCS
T ss_pred eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 567888999999999999999998876 4576543 3567889999999999999 6789999999999999999988
Q ss_pred eEEEEEec-C--CcEEEEEec--CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2153 RLIRRLVG-V--DAHAVSLSS--EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2153 klIrsL~g-h--~vssLSfSp--DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
.....+.. + .+..+++++ ++.+++.+..++.|++|++...........|...|.+++|+|++.+|++|+.
T Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~----- 248 (304)
T 2ynn_A 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE----- 248 (304)
T ss_dssp SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET-----
T ss_pred CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcC-----
Confidence 76666543 2 367778876 7889999999999999999865555555669999999999999999999973
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCC--EEEEEe
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNT--NLLVST 2305 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~--~LaSGS 2305 (2342)
||+|++||+.+++++.++. .|...+.+++|+|++. ++++|+
T Consensus 249 ------------------------------------Dg~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 249 ------------------------------------DGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp ------------------------------------TSCEEEEETTTCCEEEEEC-CSSSSEEEEEECTTCGGGCEEEEE
T ss_pred ------------------------------------CCeEEEEECCCCceeeecc-CCCccEEEEEECCCCCceEEEEec
Confidence 6789999999999999998 8888999999999885 466655
Q ss_pred CCCcEEEEeCC
Q 000085 2306 ADKQLIVFTDP 2316 (2342)
Q Consensus 2306 sDGsIrVWDi~ 2316 (2342)
|..+.+|++.
T Consensus 292 -~~g~~~~~~~ 301 (304)
T 2ynn_A 292 -DNGFTVLSLG 301 (304)
T ss_dssp -TTEEEEEECC
T ss_pred -CCceEEEEec
Confidence 5557777743
No 15
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=3.9e-30 Score=314.65 Aligned_cols=278 Identities=16% Similarity=0.176 Sum_probs=222.7
Q ss_pred ceeEEEEEcCCCCEEEEEEc------CCcEEEEecCCcccce----ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEe
Q 000085 1997 RSSAVVSITHDKEIITGGHV------DGSIKLLTSDGAKTLE----TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWR 2066 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~------DGsIrVWDl~tgkll~----tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWD 2066 (2342)
..+.+++|+|||++|++|+. |++|++|+..++.... ...+|...|++++|+|++. +++++.||+|+|||
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd 121 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWE 121 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC-
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEee
Confidence 45677999999999999995 7889999988765433 3457999999999999975 56788999999999
Q ss_pred ccCCcccccc---ccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCC-EEEEEe
Q 000085 2067 IHRAFTSRTG---TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLG-VVVSCS 2139 (2342)
Q Consensus 2067 l~tg~~i~t~---~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~-lLaSGS 2139 (2342)
+.++...... ...|...|.+++++|+++.+++++.++. ..|+. ...+..+.+|...|++++|++++. ++++++
T Consensus 122 ~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~ 201 (357)
T 4g56_B 122 ILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG 201 (357)
T ss_dssp -------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEE
T ss_pred ccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeec
Confidence 9887654332 3467788999999999999999988875 45665 456788899999999999999875 789999
Q ss_pred CCCcEEEEECCCCeEEEEEec--C--CcEEEEEecCC-cEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCC
Q 000085 2140 DSSDLLLHSIRRGRLIRRLVG--V--DAHAVSLSSEG-VIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDG 2214 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGklIrsL~g--h--~vssLSfSpDG-~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDG 2214 (2342)
.||+|++||+++++.+..+.. + .+..++|+|++ .+++.+..++.|++|++...........|...|++++|+|++
T Consensus 202 ~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~ 281 (357)
T 4g56_B 202 EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHS 281 (357)
T ss_dssp TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSS
T ss_pred cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCC
Confidence 999999999999987766543 2 36789999975 678888899999999997544444455699999999999987
Q ss_pred -CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEE
Q 000085 2215 -HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALA 2293 (2342)
Q Consensus 2215 -k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLa 2293 (2342)
++|++|+. |++|+|||+.+++++..+ +|...|++|+
T Consensus 282 ~~~lasgs~-----------------------------------------D~~i~iwd~~~~~~~~~~--~H~~~V~~va 318 (357)
T 4g56_B 282 SPFLASISE-----------------------------------------DCTVAVLDADFSEVFRDL--SHRDFVTGVA 318 (357)
T ss_dssp SCCEEEEET-----------------------------------------TSCEEEECTTSCEEEEEC--CCSSCEEEEE
T ss_pred CCEEEEEeC-----------------------------------------CCEEEEEECCCCcEeEEC--CCCCCEEEEE
Confidence 57888863 678999999999987654 6999999999
Q ss_pred Eec-CCCEEEEEeCCCcEEEEeCCCC
Q 000085 2294 LNK-DNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2294 fSP-DG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|+| |+.+|++|+.||+|++|+++..
T Consensus 319 fsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 319 WSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 998 8999999999999999997653
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=4.2e-29 Score=299.84 Aligned_cols=271 Identities=14% Similarity=0.187 Sum_probs=226.0
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccc-cccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWH-FPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~-~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
+..+++++.|+++++|+..+... ... ....+..| ...+.+++|+|+|++|++|+.|++|+|||+.+++.+..+.
T Consensus 30 ~~~l~s~s~D~~v~~W~~~~~~~--~~~~~~~~~~~h---~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~ 104 (319)
T 3frx_A 30 PNLLLSASRDKTLISWKLTGDDQ--KFGVPVRSFKGH---SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV 104 (319)
T ss_dssp TTEEEEEETTSEEEEEEEEEETT--EEEEEEEEEECC---SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ccEEEEecCCccEEEecCCCCCc--cccccceEEeCC---cccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc
Confidence 36789999999999998543111 011 11223333 4456679999999999999999999999999999999999
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEE
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~ 2115 (2342)
+|.+.|.+++|+|++.+|+||+.|++|++||+... .+..
T Consensus 105 ~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-----------------------------------------~~~~ 143 (319)
T 3frx_A 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-----------------------------------------CLAT 143 (319)
T ss_dssp CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-----------------------------------------EEEE
T ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------------------------------------eEEE
Confidence 99999999999999999999999999999998641 2445
Q ss_pred ecCCCCCeEEEEEecC------CCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEE
Q 000085 2116 LRGHHREILCCCVSSD------LGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSF 2187 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPD------g~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~ 2187 (2342)
+.+|...|.+++|+|. +..+++|+.|++|++||+++++....+.+|. +..++++|+|.+++.+..++.|++|
T Consensus 144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iw 223 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223 (319)
T ss_dssp ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 6789999999999985 4589999999999999999999999998875 7889999999999999999999999
Q ss_pred EeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2188 TLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2188 dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
++......... .+...|.+++|+|+|.++++++ ++.+
T Consensus 224 d~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~------------------------------------------~~~i 260 (319)
T 3frx_A 224 NLAAKKAMYTL-SAQDEVFSLAFSPNRYWLAAAT------------------------------------------ATGI 260 (319)
T ss_dssp ETTTTEEEEEE-ECCSCEEEEEECSSSSEEEEEE------------------------------------------TTEE
T ss_pred ECCCCcEEEEe-cCCCcEEEEEEcCCCCEEEEEc------------------------------------------CCCc
Confidence 99754433322 2567899999999999999885 3458
Q ss_pred EEEECCCCeEEEEEec-------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2268 CFLDLHTLKVFHVLKL-------GEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2268 rIWDL~Tgk~L~tL~l-------gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
++|++.....+..+.. .|...+.+++|+|||++|++|+.||.|+||++.
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 261 KVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 9999988877776642 245679999999999999999999999999954
No 17
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=5.1e-29 Score=301.42 Aligned_cols=277 Identities=14% Similarity=0.156 Sum_probs=219.1
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCccccc-ccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHF-PRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~-p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++..+++++.|++|++|+............ ...+..| ...+.+++|+|++.++++|+.|++|++||+.+++.+..+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h---~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~ 114 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH---NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF 114 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCC---SSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccC---CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence 678899999999999998654221111111 1123333 345677999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceE
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIH 2114 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~ 2114 (2342)
.+|.+.|++++|+|++++|++|+.|++|++||+...... . ..
T Consensus 115 ~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~-~-------------------------------------~~ 156 (343)
T 2xzm_R 115 VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF-S-------------------------------------SA 156 (343)
T ss_dssp ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-E-------------------------------------CC
T ss_pred cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-e-------------------------------------ee
Confidence 999999999999999999999999999999998642100 0 00
Q ss_pred EecCCCCCeEEEEEecCC----------CEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCC
Q 000085 2115 VLRGHHREILCCCVSSDL----------GVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQH 2182 (2342)
Q Consensus 2115 ~L~GHs~~Vt~VafSPDg----------~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdG 2182 (2342)
...+|...|.+++|+|++ .++++++.||+|++|| .+++....+.+|. +..++|+|+|.+++.+..++
T Consensus 157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg 235 (343)
T 2xzm_R 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK 235 (343)
T ss_dssp TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTC
T ss_pred cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCC
Confidence 123688899999999886 7899999999999999 5677777887775 78899999999999999999
Q ss_pred eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccC
Q 000085 2183 TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDF 2262 (2342)
Q Consensus 2183 sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias 2262 (2342)
.|++|++...........+...|.+++|+|++.++++|+
T Consensus 236 ~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~----------------------------------------- 274 (343)
T 2xzm_R 236 KLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT----------------------------------------- 274 (343)
T ss_dssp EEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEE-----------------------------------------
T ss_pred eEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEEC-----------------------------------------
Confidence 999999842111111122566799999999999988664
Q ss_pred CCCeEEEEECCCCeEEE--EEe----------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2263 PSPSICFLDLHTLKVFH--VLK----------LGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~--tL~----------lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
|+.|++||+.+++... .+. .+|...|++++|+|+|.+|++|+.||.|++|+..
T Consensus 275 -d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 275 -DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp -SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred -CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 4568888887665432 222 1577889999999999999999999999999954
No 18
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=9.5e-29 Score=293.01 Aligned_cols=277 Identities=19% Similarity=0.195 Sum_probs=237.9
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
..+.+++|+|++++|++|+.||.|++|++.+++....+.+|...|++++|+|++++|++|+.|++|++||+.++......
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 103 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 34667999999999999999999999999999999999999999999999999999999999999999999987655443
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
..+...+.++.++|++..+++++.++. ..|+. ...+..+.+|...|.+++|+|++.++++|+.||.|++||+++++
T Consensus 104 -~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 182 (312)
T 4ery_A 104 -KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182 (312)
T ss_dssp -ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred -cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 456778899999999999999988875 45665 45678889999999999999999999999999999999999999
Q ss_pred EEEEEecC---CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeE---EEEEccCCCEEEEEeCCCCCC
Q 000085 2154 LIRRLVGV---DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIG---CMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2154 lIrsL~gh---~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~It---sLafSPDGk~LaSGS~DGs~d 2227 (2342)
.+..+..+ .+..++++|+|.+++.+..++.+++|++...........|...+. .....+++.++++|+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~----- 257 (312)
T 4ery_A 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE----- 257 (312)
T ss_dssp EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCT-----
T ss_pred eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECC-----
Confidence 98887543 367899999999999999999999999975544444444554432 2333467888887752
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe--
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST-- 2305 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS-- 2305 (2342)
||.|++||+.+++.+..+. +|...|.+++|+|++..|++++
T Consensus 258 ------------------------------------dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 258 ------------------------------------DNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTENIIASAALE 300 (312)
T ss_dssp ------------------------------------TSCEEEEETTTCCEEEEEC-CCSSCEEEEEECSSSSEEEEEECT
T ss_pred ------------------------------------CCEEEEEECCCchhhhhhh-ccCCcEEEEeecCcCCceEEEEcc
Confidence 7789999999999999998 9999999999999999999987
Q ss_pred CCCcEEEEeCC
Q 000085 2306 ADKQLIVFTDP 2316 (2342)
Q Consensus 2306 sDGsIrVWDi~ 2316 (2342)
.||.|++|+.+
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999843
No 19
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-28 Score=297.63 Aligned_cols=275 Identities=13% Similarity=0.145 Sum_probs=211.7
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC-------cccc
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG-------AKTL 2031 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t-------gkll 2031 (2342)
.+++++.|+++++|+..++. ......+. ...+...+.+++|+|++++|++|+.|++|+|||+.. .+.+
T Consensus 26 ~las~~~D~~i~lw~~~~~~----~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~ 100 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDD----FTLIDVLD-ETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLL 100 (330)
T ss_dssp EEEEEESSSCEEEEECSSSC----CEEEEEEC-TTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEE
T ss_pred EEEEEcCCCEEEEEEecCCC----eEEEEEEe-cCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeE
Confidence 78899999999999865421 11111110 111344567799999999999999999999999853 3456
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCC
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG 2111 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~ 2111 (2342)
..+.+|.+.|++++|+|+|++|+||+.|++|++||+..... ...
T Consensus 101 ~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~------------------------------------~~~ 144 (330)
T 2hes_X 101 AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE------------------------------------EYE 144 (330)
T ss_dssp EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC------------------------------------CCE
T ss_pred EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC------------------------------------CeE
Confidence 77899999999999999999999999999999999954210 012
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--eEEEEEecCC--cEEEEEecC--CcEEEEEeCCCeEE
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG--RLIRRLVGVD--AHAVSLSSE--GVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG--klIrsL~gh~--vssLSfSpD--G~IlVwdssdGsI~ 2185 (2342)
.+..+.+|...|++++|+|++.+|++|+.||+|++||+.++ +++..+.+|. +..++|+|+ +..++.+..++.|+
T Consensus 145 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~ 224 (330)
T 2hes_X 145 CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVR 224 (330)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEE
T ss_pred EEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEE
Confidence 34567899999999999999999999999999999999877 6788888875 788999998 67888999999999
Q ss_pred EEEeCCc--------eeeeecC-CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccC
Q 000085 2186 SFTLNGV--------LVARAKL-PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVD 2256 (2342)
Q Consensus 2186 I~dlnG~--------~L~s~~~-~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~s 2256 (2342)
+|++.+. ....... .|...|++++|++++ ++++|+.
T Consensus 225 iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~---------------------------------- 269 (330)
T 2hes_X 225 VWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA---------------------------------- 269 (330)
T ss_dssp EEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET----------------------------------
T ss_pred EEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeC----------------------------------
Confidence 9998642 1222222 389999999999766 6777762
Q ss_pred CCCccCCCCeEEEEECCCCe--EEEEEecCCCC-CeEEEEEec--CCCEEEEEeCCCcEEEEeCC
Q 000085 2257 NNRFDFPSPSICFLDLHTLK--VFHVLKLGEGQ-DITALALNK--DNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2257 s~~ias~DGsIrIWDL~Tgk--~L~tL~lgHs~-~ItsLafSP--DG~~LaSGSsDGsIrVWDi~ 2316 (2342)
||.|+|||..+++ .+.....+|.. .|++++|+| ++++|++|+.||.|++|+..
T Consensus 270 -------dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 270 -------DGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp -------TSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred -------CCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 6789999998874 34444347876 899999999 78999999999999999954
No 20
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=2.1e-28 Score=288.50 Aligned_cols=275 Identities=11% Similarity=0.111 Sum_probs=234.6
Q ss_pred cceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee---cc--cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 1996 IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET---AS--GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1996 I~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t---L~--GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
...+.+++|+|++++|++|+ ||.|++||+.+++.... +. +|...|++++|+|++++|++|+.|++|++||+.++
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 129 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 34466799999999999998 99999999988764433 32 79999999999999999999999999999999986
Q ss_pred cccccc-ccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2071 FTSRTG-TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2071 ~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrI 2146 (2342)
...... ...+...+.++.+++++..++++..++. ..|+. ......+.+|...|++++|+|++.++++++.||.|++
T Consensus 130 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~ 209 (337)
T 1gxr_A 130 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209 (337)
T ss_dssp --EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEE
Confidence 532222 4456677889999999999988887764 45665 3557788899999999999999999999999999999
Q ss_pred EECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2147 HSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2147 WDLrTGklIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
||+++++.+..+... .+..++++|+|..++.+..++.+++|++....... ...|...|.+++|+|+|+++++++.
T Consensus 210 ~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~--- 285 (337)
T 1gxr_A 210 WDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGK--- 285 (337)
T ss_dssp EETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEET---
T ss_pred EECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcCCccceeEEEECCCCCEEEEecC---
Confidence 999999998887653 47899999999999999999999999997654432 3458999999999999999998862
Q ss_pred CCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2226 TNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2226 ~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS 2305 (2342)
||.|++||+.+++.+.... |...|++++|+|++++|++++
T Consensus 286 --------------------------------------dg~i~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 286 --------------------------------------DNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp --------------------------------------TSEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEE
T ss_pred --------------------------------------CCcEEEEECCCCeEEEEec--CCCcEEEEEECCCCCEEEEec
Confidence 6789999999999886554 888999999999999999999
Q ss_pred CCCcEEEEeC
Q 000085 2306 ADKQLIVFTD 2315 (2342)
Q Consensus 2306 sDGsIrVWDi 2315 (2342)
.||.|++|++
T Consensus 326 ~dg~i~iw~~ 335 (337)
T 1gxr_A 326 GDKKATVYEV 335 (337)
T ss_dssp TTSCEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9999999994
No 21
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-28 Score=291.38 Aligned_cols=289 Identities=12% Similarity=0.090 Sum_probs=241.9
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
..+.+++|+|++++|++|+.||.|+|||+.+++.+..+.+|.+.|++++|+|++++|++++.|++|++||+.++......
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 112 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW 112 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999987765554
Q ss_pred ccCCCCCCccccccCCCCCceeecCC-----C-ccccccC-------------CceEEecCCCC--CeEEEEEecCCCEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASAD-----K-SRRRRIE-------------GPIHVLRGHHR--EILCCCVSSDLGVV 2135 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D-----~-s~~~~i~-------------~~l~~L~GHs~--~Vt~VafSPDg~lL 2135 (2342)
. +...+..+.++|++..++++..+ + +..|+.. .....+.+|.. .+.+++|+|+++++
T Consensus 113 ~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 190 (369)
T 3zwl_B 113 K--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI 190 (369)
T ss_dssp E--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEE
T ss_pred e--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEE
Confidence 3 66788999999999999888765 3 3334431 24556677777 99999999999999
Q ss_pred EEEeCCCcEEEEECCC-CeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEc
Q 000085 2136 VSCSDSSDLLLHSIRR-GRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEIS 2211 (2342)
Q Consensus 2136 aSGS~DGtIrIWDLrT-GklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafS 2211 (2342)
++++.||.|++||+++ +..+..+..|. +..++|+++|.+++.+..++.+++|++.. ..+.... +...+.+++|+
T Consensus 191 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~ 268 (369)
T 3zwl_B 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVIT 268 (369)
T ss_dssp EEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEec
Confidence 9999999999999999 78888888764 78899999999999999999999999974 3333332 78899999999
Q ss_pred cCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEE
Q 000085 2212 LDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITA 2291 (2342)
Q Consensus 2212 PDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~Its 2291 (2342)
|+++++++++.++....+. ... ......+++||..+++.+..+. +|...|++
T Consensus 269 ~~~~~l~~~~~~~~~~~~~------~~~---------------------~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~ 320 (369)
T 3zwl_B 269 PLKEFIILGGGQEAKDVTT------TSA---------------------NEGKFEARFYHKIFEEEIGRVQ-GHFGPLNT 320 (369)
T ss_dssp SSSSEEEEEECCC----------------------------------------CEEEEEETTTCCEEEEEE-CCSSCEEE
T ss_pred CCCceEEEeecCCCceEEE------Eec---------------------CCCcceeEEEecCCCcchhhee-cccCcEEE
Confidence 9999999998655421111 000 0013479999999999999998 89999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2292 LALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2292 LafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
++|+|++++|++|+.||.|++|+...
T Consensus 321 ~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 321 VAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEECH
T ss_pred EEECCCCCEEEEEcCCCeEEEEECcc
Confidence 99999999999999999999999653
No 22
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=2.3e-28 Score=301.90 Aligned_cols=280 Identities=16% Similarity=0.214 Sum_probs=226.0
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccc-------cceec--cccCcceeEEEEEcCCCCEEEEEEcCCcEEEEe
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFP-------RALAF--ASSGIRSSAVVSITHDKEIITGGHVDGSIKLLT 2024 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p-------~sls~--hs~gI~Svt~VafSpDGklLASGS~DGsIrVWD 2024 (2342)
-++|+.+++++ ++++++|+..++......... ..+.. ...+...+.+++|+|+|++|++|+.|++|+|||
T Consensus 73 spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd 151 (393)
T 1erj_A 73 SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 151 (393)
T ss_dssp CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 46788888876 578999997664321111000 00000 001112367899999999999999999999999
Q ss_pred cCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc
Q 000085 2025 SDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS 2104 (2342)
Q Consensus 2025 l~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s 2104 (2342)
+.+++.+..+.+|...|++++|+|++++|++|+.|++|++||+.++...
T Consensus 152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~------------------------------- 200 (393)
T 1erj_A 152 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS------------------------------- 200 (393)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-------------------------------
T ss_pred CCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE-------------------------------
Confidence 9999999999999999999999999999999999999999999875321
Q ss_pred cccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEE-------ecC--CcEEEEEecCCcE
Q 000085 2105 RRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRGRLIRRL-------VGV--DAHAVSLSSEGVI 2174 (2342)
Q Consensus 2105 ~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTGklIrsL-------~gh--~vssLSfSpDG~I 2174 (2342)
..+ .|...+.+++|+| ++.++++|+.||+|++||++++..+..+ .+| .+..++|+++|..
T Consensus 201 ---------~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~ 270 (393)
T 1erj_A 201 ---------LTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 270 (393)
T ss_dssp ---------EEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE
T ss_pred ---------EEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE
Confidence 112 2456799999999 8999999999999999999999988877 334 3789999999999
Q ss_pred EEEEeCCCeEEEEEeCCce------------eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCC
Q 000085 2175 MTWNKLQHTLSSFTLNGVL------------VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS 2242 (2342)
Q Consensus 2175 lVwdssdGsI~I~dlnG~~------------L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~ 2242 (2342)
++.+..++.|++|++.... ......+|...|.+++|++++.+|++|+.
T Consensus 271 l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-------------------- 330 (393)
T 1erj_A 271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-------------------- 330 (393)
T ss_dssp EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET--------------------
T ss_pred EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC--------------------
Confidence 9999999999999985311 12223458999999999999999999973
Q ss_pred CccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec------CCCEEEEEeCCCcEEEEeCC
Q 000085 2243 GTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK------DNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2243 ~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP------DG~~LaSGSsDGsIrVWDi~ 2316 (2342)
|+.|++||+.+++++..+. +|...|.+++|++ ++.+|++|+.||+|+||+..
T Consensus 331 ---------------------D~~v~iwd~~~~~~~~~l~-~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 331 ---------------------DRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp ---------------------TSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred ---------------------CCeEEEEECCCCeEEEEEC-CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 7789999999999999998 9999999999986 68899999999999999954
Q ss_pred C
Q 000085 2317 A 2317 (2342)
Q Consensus 2317 s 2317 (2342)
.
T Consensus 389 ~ 389 (393)
T 1erj_A 389 K 389 (393)
T ss_dssp E
T ss_pred c
Confidence 3
No 23
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=5.4e-28 Score=286.53 Aligned_cols=284 Identities=19% Similarity=0.203 Sum_probs=233.1
Q ss_pred ceeccccCcceeEEEEEcCC-CCEEEEEEcCCcEEEEecCCcc-----cceecccCCCCeEEEEecCCCCEEEEEeCCCc
Q 000085 1988 ALAFASSGIRSSAVVSITHD-KEIITGGHVDGSIKLLTSDGAK-----TLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061 (2342)
Q Consensus 1988 sls~hs~gI~Svt~VafSpD-GklLASGS~DGsIrVWDl~tgk-----ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGT 2061 (2342)
++.+|.+ .|++++|+|+ +++|++|+.|++|+|||+.+++ +..++.+|.+.|++++|+|++++|++|+.|+.
T Consensus 33 tL~GH~~---~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 33 TLKGHNG---WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EECCCSS---CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EECCccC---CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 3444544 4666999998 5799999999999999987654 45678999999999999999999999999999
Q ss_pred eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccccCC---ceEEecCCCCCeEEEEEecC--CCEE
Q 000085 2062 ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG---PIHVLRGHHREILCCCVSSD--LGVV 2135 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~---~l~~L~GHs~~Vt~VafSPD--g~lL 2135 (2342)
|++|+......... .......+....+++++..++++..++. ..|+... ....+.+|...|.+++|+++ ..++
T Consensus 110 i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 110 LRLWDLTTGTTTRR-FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEEETTTTEEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred ceEEeecccceeee-ecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 99999988644333 2344555667778889999998888765 4465533 23456789999999999876 4578
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccC
Q 000085 2136 VSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLD 2213 (2342)
Q Consensus 2136 aSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPD 2213 (2342)
++++.|++|++||+++++.+..+.+|. +..++|+|+|.+++.+..++.+++|++......... .+...|.++.|+|+
T Consensus 189 ~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~ 267 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-DGGDIINALCFSPN 267 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE-ECSSCEEEEEECSS
T ss_pred EEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee-cCCceEEeeecCCC
Confidence 999999999999999999999998875 788999999999999999999999999754433222 25678999999999
Q ss_pred CCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec--------CC
Q 000085 2214 GHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL--------GE 2285 (2342)
Q Consensus 2214 Gk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l--------gH 2285 (2342)
+.+++++. |+.|++||+.++..+..+.. +|
T Consensus 268 ~~~~~~~~------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h 305 (340)
T 4aow_A 268 RYWLCAAT------------------------------------------GPSIKIWDLEGKIIVDELKQEVISTSSKAE 305 (340)
T ss_dssp SSEEEEEE------------------------------------------TTEEEEEETTTTEEEEEECCC-------CC
T ss_pred CceeeccC------------------------------------------CCEEEEEECCCCeEEEeccccceeeeccCC
Confidence 88776553 67899999999887776542 57
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2286 GQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2286 s~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
...|++++|+|||++|++|+.||.|+||++.+.
T Consensus 306 ~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 306 PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 889999999999999999999999999996544
No 24
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=1.3e-27 Score=316.42 Aligned_cols=275 Identities=20% Similarity=0.192 Sum_probs=224.5
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
+..+++++.|++|++|+......... .....+..|. ..+.+++|+|++++|++|+.||+|+|||+.+++.+..+.+
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~~~-~~~~~~~~h~---~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~ 470 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKAYG-VAQRRLTGHS---HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVG 470 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTCSC-EEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEeCCCcEEEEEccCCCcccc-cccceecCCC---CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeC
Confidence 46789999999999998654221100 0112333444 4566799999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL 2116 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L 2116 (2342)
|.+.|++++|+|++++|+|||.|++|++||....... . .....
T Consensus 471 h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~-~------------------------------------~~~~~ 513 (694)
T 3dm0_A 471 HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY-T------------------------------------ISEGG 513 (694)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-E------------------------------------ECSST
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce-e------------------------------------eccCC
Confidence 9999999999999999999999999999997542110 0 00012
Q ss_pred cCCCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCC-
Q 000085 2117 RGHHREILCCCVSSDL--GVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNG- 2191 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg--~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG- 2191 (2342)
.+|...|+|++|+|++ ..+++|+.||+|++||++++++...+.+|. +..++++|+|.+++.+..++.|++|++..
T Consensus 514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 5789999999999986 689999999999999999999999998875 78999999999999999999999999964
Q ss_pred ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEE
Q 000085 2192 VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLD 2271 (2342)
Q Consensus 2192 ~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWD 2271 (2342)
..+.. ..+...|.+++|+|++.++++++ ++.|+|||
T Consensus 594 ~~~~~--~~~~~~v~~~~~sp~~~~l~~~~------------------------------------------~~~i~iwd 629 (694)
T 3dm0_A 594 KKLYS--LEANSVIHALCFSPNRYWLCAAT------------------------------------------EHGIKIWD 629 (694)
T ss_dssp EEEEC--CBCSSCEEEEEECSSSSEEEEEE------------------------------------------TTEEEEEE
T ss_pred ceEEE--ecCCCcEEEEEEcCCCcEEEEEc------------------------------------------CCCEEEEE
Confidence 33332 23667899999999999998775 45699999
Q ss_pred CCCCeEEEEEecCC------------------CCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2272 LHTLKVFHVLKLGE------------------GQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2272 L~Tgk~L~tL~lgH------------------s~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+.+++.+..+...+ ...|++++|+|||++|++|+.||.|+||++.
T Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 630 LESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 99998888775211 1237899999999999999999999999954
No 25
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.96 E-value=4.5e-28 Score=301.50 Aligned_cols=258 Identities=17% Similarity=0.221 Sum_probs=222.4
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
+++..+++++.|++|++|+..++.. ...+..|. ..+.+++|+|++++|++|+.|++|+|||+.+++++.++
T Consensus 118 p~~~~l~s~s~Dg~i~vwd~~~~~~------~~~l~~h~---~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~ 188 (410)
T 1vyh_C 118 PVFSVMVSASEDATIKVWDYETGDF------ERTLKGHT---DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188 (410)
T ss_dssp SSSSEEEEEESSSCEEEEETTTCCC------CEEECCCS---SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcE------EEEEeccC---CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Confidence 3567889999999999999766322 23344444 34667999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc--CC
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EG 2111 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~ 2111 (2342)
.+|...|++++|+|++++|+||+.|++|++||+.++.+..++ ..+...+..+.+++++..+++++.|+. ..|+. ..
T Consensus 189 ~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~ 267 (410)
T 1vyh_C 189 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 267 (410)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 999999999999999999999999999999999988765544 456778889999999999999988875 44665 45
Q ss_pred ceEEecCCCCCeEEEEEecC--------------------CCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEe
Q 000085 2112 PIHVLRGHHREILCCCVSSD--------------------LGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLS 2169 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPD--------------------g~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfS 2169 (2342)
....+.+|...|.+++|+|+ +.++++|+.||+|++||++++.++..+.+|. +..++|+
T Consensus 268 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~ 347 (410)
T 1vyh_C 268 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 347 (410)
T ss_dssp EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEc
Confidence 67788999999999999996 6789999999999999999999999999876 6889999
Q ss_pred cCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2170 SEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2170 pDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
++|.+++.+..++.|++|++...........|...|++++|+|++.+|++|+.
T Consensus 348 ~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~ 400 (410)
T 1vyh_C 348 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400 (410)
T ss_dssp SSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999754443444569999999999999999999973
No 26
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.96 E-value=6.5e-28 Score=295.85 Aligned_cols=273 Identities=15% Similarity=0.155 Sum_probs=226.9
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE 2032 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~ 2032 (2342)
.-++|+.+++++.|+.+++|+..++... ..+..+ ..+.+.++++++++|++|+.||.|++||+.+++...
T Consensus 64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~~------~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 64 FEKVGSHLYKARLDGHDFLFNTIIRDGS------KMLKRA----DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp EEEEETTEEEEEETTEEEEEECCSEETT------TTSCSC----CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred eeecCCeEEEEEcCCcEEEEEeccccee------eEEecC----CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee
Confidence 3467888999999999999997652211 111111 234456789999999999999999999999999999
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
.+.+|.+.|++++|+|++++|++|+.|++|++||+.++. .
T Consensus 134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~----------------------------------------~ 173 (420)
T 3vl1_A 134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS----------------------------------------N 173 (420)
T ss_dssp ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----------------------------------------C
T ss_pred ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc----------------------------------------C
Confidence 999999999999999999999999999999999998742 3
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-----cE---------------------EE
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-----AH---------------------AV 2166 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-----vs---------------------sL 2166 (2342)
+..+.+|...|++++|+|++.++++|+.||+|++||+++++.+..+..+. +. .+
T Consensus 174 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~ 253 (420)
T 3vl1_A 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL 253 (420)
T ss_dssp CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTT
T ss_pred ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccce
Confidence 34567899999999999999999999999999999999999999987531 23 34
Q ss_pred EEecCCcEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCCC-EEEEEeCCCCCCCCCcccccccCCCCCCc
Q 000085 2167 SLSSEGVIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDGH-SALIGVNSSSTNNGSYDNIQGLNSKQSGT 2244 (2342)
Q Consensus 2167 SfSpDG~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk-~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ 2244 (2342)
+|+++|.+++.+..+|.+++|++.. ..+......|...|++++|+|++. ++++|+.
T Consensus 254 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~---------------------- 311 (420)
T 3vl1_A 254 EFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE---------------------- 311 (420)
T ss_dssp CSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEET----------------------
T ss_pred EEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeC----------------------
Confidence 5578999999999999999999964 444444445889999999999999 9998862
Q ss_pred cccccccccccCCCCccCCCCeEEEEECCCCe-EEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2245 EDFDLASDQSVDNNRFDFPSPSICFLDLHTLK-VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2245 iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk-~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
||.|++||+.+++ ++..+...|...|+++.+ +++.+|++++.||.|++|+...
T Consensus 312 -------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 312 -------------------NGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp -------------------TSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred -------------------CCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence 6889999999874 367777457888888855 5788999999999999999665
No 27
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=8.1e-28 Score=288.61 Aligned_cols=307 Identities=12% Similarity=0.073 Sum_probs=229.3
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc--cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAK--TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgk--ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
.+.+++|+|++++|++|+.|+.|++||+.+++ .+..+.+|...|++++|+|++++|++|+.|++|++||+.++.....
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence 35569999999999999999999999999987 8888999999999999999999999999999999999988754333
Q ss_pred c-ccCCCCCCccccccCCCCCceeecCCCc-cccccCC------ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2076 G-TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG------PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2076 ~-~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~------~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIW 2147 (2342)
. ...+...+.++.+++++..++++..++. ..|+... ......+|...|++++|+|++.++++|+.||.|++|
T Consensus 90 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 169 (372)
T 1k8k_C 90 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 169 (372)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEE
Confidence 3 3556778999999999999999888765 4455432 123346789999999999999999999999999999
Q ss_pred EC------------------CCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEE
Q 000085 2148 SI------------------RRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGC 2207 (2342)
Q Consensus 2148 DL------------------rTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~Its 2207 (2342)
|+ .+++.+..+..|. +..++|+++|..++.+..++.+++|++...........|...|.+
T Consensus 170 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~ 249 (372)
T 1k8k_C 170 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 249 (372)
T ss_dssp ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEE
T ss_pred EcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEE
Confidence 95 4678888887664 789999999999999999999999999633333333458889999
Q ss_pred EEEccCCCEEEEEeCCCCCCCCCcccccccCC--CCCCccccccccccccCCCCccCCCCeEEEE---ECCCCeEE----
Q 000085 2208 MEISLDGHSALIGVNSSSTNNGSYDNIQGLNS--KQSGTEDFDLASDQSVDNNRFDFPSPSICFL---DLHTLKVF---- 2278 (2342)
Q Consensus 2208 LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~--~~~~~iaFspd~~~s~ss~~ias~DGsIrIW---DL~Tgk~L---- 2278 (2342)
++|+|+|.++++| .++. ..+|++.. ....... ..+.. ..........+.+| |. .++..
T Consensus 250 ~~~~~~~~~l~~~-~d~~------i~i~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 316 (372)
T 1k8k_C 250 VTFITESSLVAAG-HDCF------PVLFTYDSAAGKLSFGG-RLDVP----KQSSQRGLTARERFQNLDK-KASSEGSAA 316 (372)
T ss_dssp EEEEETTEEEEEE-TTSS------CEEEEEETTTTEEEECC-CCCCC------------CHHHHHHHCCC-CC-------
T ss_pred EEEecCCCEEEEE-eCCe------EEEEEccCcCceEEEee-ccCcc----ccchhhhcchhhhhhhccc-ccccccCcc
Confidence 9999999999887 4444 23444443 1000000 00000 00000001122233 21 11211
Q ss_pred --EEEecCCCCCeEEEEEe-cCC---CEEEEEeCCCcEEEEeCCC
Q 000085 2279 --HVLKLGEGQDITALALN-KDN---TNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2279 --~tL~lgHs~~ItsLafS-PDG---~~LaSGSsDGsIrVWDi~s 2317 (2342)
..+..+|...|++++|+ ++| .+|++|+.||.|++|++..
T Consensus 317 ~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 317 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 22333899999999976 676 9999999999999999543
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1e-28 Score=301.56 Aligned_cols=329 Identities=10% Similarity=0.115 Sum_probs=237.7
Q ss_pred CCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC----cccceecccCCC
Q 000085 1964 ASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG----AKTLETASGHCA 2039 (2342)
Q Consensus 1964 SsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t----gkll~tL~GHt~ 2039 (2342)
+.|+.+++|+..++.... .... .. +-..+.+++|+|++++|++|+.||.|++||+.+ .+.+..+.+|.+
T Consensus 42 ~~d~~v~iw~~~~~~~~~---~~~~-~~---~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~ 114 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEK---PIAS-LQ---VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS 114 (416)
T ss_dssp CCCCCCEEEESSSGGGCS---CSCC-CC---CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS
T ss_pred CCCCeEEEEEccCCCCCc---EEEE-Ee---cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCcc
Confidence 889999999976522110 0011 11 233467799999999999999999999999987 457888999999
Q ss_pred CeEEEEecCC-CCEEEEEeCCCceEEEeccCCc------ccccc--ccCCCCCCccccccCC-CCCceeecCCCc-cccc
Q 000085 2040 PVTCLALSSD-SNFLVTGSQDTTILLWRIHRAF------TSRTG--TIEPSSGMGTPGNSIG-SSTPANASADKS-RRRR 2108 (2342)
Q Consensus 2040 ~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~------~i~t~--~~~~~~~V~svs~SpD-G~~Las~s~D~s-~~~~ 2108 (2342)
.|++++|+|+ +++|++|+.|++|++||+.++. ..... ...+...+.+++++++ +..++++..++. ..|+
T Consensus 115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 194 (416)
T 2pm9_A 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWD 194 (416)
T ss_dssp CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence 9999999998 8999999999999999999875 22222 3457778999999999 677788777764 5566
Q ss_pred cC--CceEEecCC------CCCeEEEEEecCC-CEEEEEeCCC---cEEEEECCCC-eEEEEEe-cCC--cEEEEEec-C
Q 000085 2109 IE--GPIHVLRGH------HREILCCCVSSDL-GVVVSCSDSS---DLLLHSIRRG-RLIRRLV-GVD--AHAVSLSS-E 2171 (2342)
Q Consensus 2109 i~--~~l~~L~GH------s~~Vt~VafSPDg-~lLaSGS~DG---tIrIWDLrTG-klIrsL~-gh~--vssLSfSp-D 2171 (2342)
.. ..+..+..| ...|++++|+|++ .++++++.|+ .|++||++++ ..+..+. +|. +..++|+| +
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 274 (416)
T 2pm9_A 195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274 (416)
T ss_dssp TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSC
T ss_pred CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCC
Confidence 53 455666665 7899999999997 6899999999 9999999986 5666776 554 78999999 9
Q ss_pred CcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCC-CEEEEEeCCCCCCCCCcccccccCCCCCCccccccc
Q 000085 2172 GVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDG-HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLA 2250 (2342)
Q Consensus 2172 G~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDG-k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd 2250 (2342)
+.+++.+..++.+++|++...........|...|++++|+|++ .++++++.|+. .++|++.........-.
T Consensus 275 ~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~------i~iw~~~~~~~~~~~~~-- 346 (416)
T 2pm9_A 275 EHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK------IEVQTLQNLTNTLDEQE-- 346 (416)
T ss_dssp SSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE------EEEEESCCCCCSSCC----
T ss_pred CCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc------EEEEEccCCCCCccccc--
Confidence 9999999999999999987544444444689999999999999 89998875444 33444433221100000
Q ss_pred cccccCCCCccCCCCeEEEEECCC----------CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2251 SDQSVDNNRFDFPSPSICFLDLHT----------LKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2251 ~~~s~ss~~ias~DGsIrIWDL~T----------gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
... ........+|.... ... .....|..++++++|+|||++|++|+.||.|+||++.
T Consensus 347 -~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 347 -TET------KQQESETDFWNNVSREESKEKPSVFHL--QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp ---------------------------CCSCCCSSCC--CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred -ccc------cccCCcccccccccccccccccccccc--cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 000 00000001110000 000 0111367788899999999999999999999999954
No 29
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=5e-27 Score=285.32 Aligned_cols=280 Identities=10% Similarity=0.095 Sum_probs=229.0
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC----C---CEEEEEEcCCcEEEEecCCccc
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD----K---EIITGGHVDGSIKLLTSDGAKT 2030 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD----G---klLASGS~DGsIrVWDl~tgkl 2030 (2342)
..+++++.|+.|++|+..++.....+.....+..|. ..+.+++|+|+ + ++|++|+.||.|++||+.+++.
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~ 103 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK---SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE 103 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT---TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCC---CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcc
Confidence 578889999999999977643222222333333333 45677999999 9 9999999999999999999887
Q ss_pred -----ceecccC-----CCCeEEEEec----CCCCE-EEEEeCCCceEEEeccC------CccccccccCCCCCCccccc
Q 000085 2031 -----LETASGH-----CAPVTCLALS----SDSNF-LVTGSQDTTILLWRIHR------AFTSRTGTIEPSSGMGTPGN 2089 (2342)
Q Consensus 2031 -----l~tL~GH-----t~~VtcLAfS----PDG~~-LaSGS~DGTVrVWDl~t------g~~i~t~~~~~~~~V~svs~ 2089 (2342)
...+.+| ...|++++|+ |++.+ |++|+.||+|++||+.+ +.... +
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------~ 169 (397)
T 1sq9_A 104 TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN--------------W 169 (397)
T ss_dssp TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC--------------C
T ss_pred cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee--------------c
Confidence 8888889 5999999999 99999 99999999999999987 32111 0
Q ss_pred cCCCCCceeecCCCccccccCCceEEe-------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec--
Q 000085 2090 SIGSSTPANASADKSRRRRIEGPIHVL-------RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG-- 2160 (2342)
Q Consensus 2090 SpDG~~Las~s~D~s~~~~i~~~l~~L-------~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g-- 2160 (2342)
.+...+ ..|...|++++|+|++ ++++|+.||.|++||+++++.+..+..
T Consensus 170 ---------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 227 (397)
T 1sq9_A 170 ---------------------SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH 227 (397)
T ss_dssp ---------------------CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred ---------------------cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccc
Confidence 011123 4588999999999999 999999999999999999999999987
Q ss_pred -C-----CcEEEEEecCCcEEEEEeCC---CeEEEEEeCCceeeeecCC-------------CCCCeEEEEEccCCCEEE
Q 000085 2161 -V-----DAHAVSLSSEGVIMTWNKLQ---HTLSSFTLNGVLVARAKLP-------------LSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2161 -h-----~vssLSfSpDG~IlVwdssd---GsI~I~dlnG~~L~s~~~~-------------Hs~~ItsLafSPDGk~La 2218 (2342)
| .+..++|+|+|.+++.+..+ +.|++|++........... |...|.+++|+|++++|+
T Consensus 228 ~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 228 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 307 (397)
T ss_dssp ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred cccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence 5 37899999999999999988 9999999864443333444 899999999999999999
Q ss_pred EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec-----CC--------
Q 000085 2219 IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL-----GE-------- 2285 (2342)
Q Consensus 2219 SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l-----gH-------- 2285 (2342)
+|+. ||.|++||+.+++++..+.. +|
T Consensus 308 ~~~~-----------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 308 SAGW-----------------------------------------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp EEET-----------------------------------------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred EEeC-----------------------------------------CCeEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence 9872 67899999999999998872 45
Q ss_pred -------CCCeEEEEEecCC----------CEEEEEeCCCcEEEEeCCC
Q 000085 2286 -------GQDITALALNKDN----------TNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2286 -------s~~ItsLafSPDG----------~~LaSGSsDGsIrVWDi~s 2317 (2342)
...|++++|+|++ .+|++|+.||.|++|+..+
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 8899999999998 7999999999999999654
No 30
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.96 E-value=2.2e-27 Score=286.21 Aligned_cols=259 Identities=14% Similarity=0.155 Sum_probs=220.1
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
++..+++++.|+++|+|+..+... .....+..| ...+.+++|++++.++++|+.|++|++||+.+++.+..+.
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~~~~----~~~~~l~gh---~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~ 119 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRDERL----DLQWSLEGH---QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID 119 (321)
T ss_dssp --CEEEEEETTSCEEEEEEETTEE----EEEEEECCC---SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEECCCCCe----eeeeeeccC---CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEe
Confidence 466889999999999998544111 111123333 3456679999999999999999999999999999999999
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCc
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGP 2112 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~ 2112 (2342)
+|...|.+++|+|++++|++|+.|++|++|++.++...... ..+...+.+++++|+++.++++..++. ..|+. .+.
T Consensus 120 ~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~ 198 (321)
T 3ow8_A 120 AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL 198 (321)
T ss_dssp CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence 99999999999999999999999999999999987654433 345567889999999999999988875 44665 456
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
+..+.+|...|++++|+|++.+|++|+.||+|++||++++..+..+.+|. +..++|+|+|..++.+..++.+++|++.
T Consensus 199 ~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 199 LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 78899999999999999999999999999999999999999999998876 7889999999999999999999999998
Q ss_pred CceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2191 GVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2191 G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
..........|...|++++|+|+|.+|++++.
T Consensus 279 ~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 279 TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 65555555679999999999999999999973
No 31
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=2.2e-27 Score=332.35 Aligned_cols=344 Identities=14% Similarity=0.100 Sum_probs=268.1
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC--CCEEEEEEcCCcEEEEecCCcccc
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD--KEIITGGHVDGSIKLLTSDGAKTL 2031 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD--GklLASGS~DGsIrVWDl~tgkll 2031 (2342)
.++|+.+++++.|+++++|+..++.. ...+..| ...+.+++|+|+ +.++++|+.||.|++||+.+++++
T Consensus 666 s~~~~~l~s~~~d~~v~vwd~~~~~~------~~~~~~~---~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~ 736 (1249)
T 3sfz_A 666 SSDDSYIATCSADKKVKIWDSATGKL------VHTYDEH---SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736 (1249)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCE------EEEEECC---SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE
T ss_pred ecCCCEEEEEeCCCeEEEEECCCCce------EEEEcCC---CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh
Confidence 46788999999999999999776321 1222333 345667999995 459999999999999999999999
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc-----------------------------------
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG----------------------------------- 2076 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~----------------------------------- 2076 (2342)
.++.+|.+.|++++|+|++++|++|+.||+|++||+.++......
T Consensus 737 ~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1249)
T 3sfz_A 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 816 (1249)
T ss_dssp EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE
T ss_pred heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE
Confidence 999999999999999999999999999999999999876432211
Q ss_pred -------------------ccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCE
Q 000085 2077 -------------------TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGV 2134 (2342)
Q Consensus 2077 -------------------~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~l 2134 (2342)
...+...+.++.++|++..++++..++. ..|+. ...+..+.+|...|++++|+|++.+
T Consensus 817 ~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~ 896 (1249)
T 3sfz_A 817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 896 (1249)
T ss_dssp ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCE
Confidence 0134455666677777777777666654 33544 3456778899999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeE---------------------------------------EEEEecCCcEEEEEecCCcEE
Q 000085 2135 VVSCSDSSDLLLHSIRRGRL---------------------------------------IRRLVGVDAHAVSLSSEGVIM 2175 (2342)
Q Consensus 2135 LaSGS~DGtIrIWDLrTGkl---------------------------------------IrsL~gh~vssLSfSpDG~Il 2175 (2342)
+++++.||+|++||+.++.. ........+..++++|+|..+
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 976 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 976 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEE
T ss_pred EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEE
Confidence 99999999999999753100 001112246789999999999
Q ss_pred EEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCC----------Ccc
Q 000085 2176 TWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS----------GTE 2245 (2342)
Q Consensus 2176 VwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~----------~~i 2245 (2342)
+.+..+|.+.+|++...........|...|++++|+|+|+++++|+.++. ..+|++..... ..+
T Consensus 977 ~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~------i~vwd~~~~~~~~~~~~~~~v~~~ 1050 (1249)
T 3sfz_A 977 AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSV------IQVWNWQTGDYVFLQAHQETVKDF 1050 (1249)
T ss_dssp EEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSB------EEEEETTTTEEECCBCCSSCEEEE
T ss_pred EEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCE------EEEEECCCCceEEEecCCCcEEEE
Confidence 99999999999999765555555569999999999999999999998776 45566554321 111
Q ss_pred ccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2246 DFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2246 aFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.+.++.. ......|+.|++||+.+++.+..+. +|...|++++|+|++++|++++.||+|++|+....
T Consensus 1051 ~~~~~~~-----l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~ 1117 (1249)
T 3sfz_A 1051 RLLQDSR-----LLSWSFDGTVKVWNVITGRIERDFT-CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117 (1249)
T ss_dssp EECSSSE-----EEEEESSSEEEEEETTTTCCCEEEE-CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSS
T ss_pred EEcCCCc-----EEEEECCCcEEEEECCCCceeEEEc-ccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCc
Confidence 2222211 1223369999999999999999998 89999999999999999999999999999997654
No 32
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=5.7e-28 Score=301.93 Aligned_cols=292 Identities=12% Similarity=0.088 Sum_probs=224.8
Q ss_pred ceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCcccc--eecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCcc
Q 000085 1997 RSSAVVSITH-DKEIITGGHVDGSIKLLTSDGAKTL--ETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1997 ~Svt~VafSp-DGklLASGS~DGsIrVWDl~tgkll--~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
..|+|++|+| ++++||+|+.||+|+|||+.+++.. ..+.+|.+.|++|+|+| ++++|+|||.||+|++||+.+...
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence 3477899999 5679999999999999999877543 45678999999999998 689999999999999999987533
Q ss_pred cccc-ccCCCCCCccccccCCCCCceeecCCCc-cccccC-CceEEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEE
Q 000085 2073 SRTG-TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE-GPIHVLRGHHREILCCCVSSDLG-VVVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2073 i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~-~~l~~L~GHs~~Vt~VafSPDg~-lLaSGS~DGtIrIWD 2148 (2342)
.... .......+.++.+++++..++++..++. ..|+.. +.+..+.+|...|++++|+|++. ++++|+.||+|++||
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd 279 (435)
T 4e54_B 200 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD 279 (435)
T ss_dssp EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEE
T ss_pred eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEe
Confidence 2211 2233445778899999999999988875 456653 45678899999999999999876 788999999999999
Q ss_pred CCCCeEEEEE---ecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCC------CCeEEEEEccCCCEE
Q 000085 2149 IRRGRLIRRL---VGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLS------GSIGCMEISLDGHSA 2217 (2342)
Q Consensus 2149 LrTGklIrsL---~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs------~~ItsLafSPDGk~L 2217 (2342)
+++++....+ .+| .+..++|+|+|..++.+..++.|++|++...........|. ..+....|+|++.++
T Consensus 280 ~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (435)
T 4e54_B 280 LRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI 359 (435)
T ss_dssp TTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCE
T ss_pred cccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEE
Confidence 9987654333 234 37889999999999999999999999986433222222222 234456889999988
Q ss_pred EEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEE-EEec
Q 000085 2218 LIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITAL-ALNK 2296 (2342)
Q Consensus 2218 aSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsL-afSP 2296 (2342)
++++.+.... .......++.|++||..+++.+..+..+|...|.++ +|+|
T Consensus 360 ~~~~~~d~~~-----------------------------~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp 410 (435)
T 4e54_B 360 VVGRYPDPNF-----------------------------KSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP 410 (435)
T ss_dssp EEECCCCTTS-----------------------------CCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT
T ss_pred EEEEcCCCCe-----------------------------EEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC
Confidence 8875321100 000112367899999999999999876888899988 6999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC
Q 000085 2297 DNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2297 DG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
+|.+|++|+ |+.|+||+....
T Consensus 411 dg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC--
T ss_pred CCCEEEEEc-CCcEEEEECCcC
Confidence 999998876 889999996654
No 33
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=7.7e-27 Score=277.10 Aligned_cols=241 Identities=11% Similarity=0.075 Sum_probs=198.5
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCC--cccceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCcc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDG--AKTLETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~t--gkll~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
..+.+++|+|+|++|++|+.|++|+|||+.+ ++.+.++.+|.+.|++++|+++ +++|+|||.|++|+|||+.++..
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~ 89 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW 89 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce
Confidence 3466799999999999999999999999974 4678899999999999999864 89999999999999999976421
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIWDLr 2150 (2342)
..+..+.+|...|++++|+|+ +.++++|+.||+|++||++
T Consensus 90 --------------------------------------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~ 131 (297)
T 2pm7_B 90 --------------------------------------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK 131 (297)
T ss_dssp --------------------------------------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred --------------------------------------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence 123456789999999999997 8999999999999999998
Q ss_pred CCeE--EEEEecCC--cEEEEEecC-------------CcEEEEEeCCCeEEEEEeCCce----eeeecCCCCCCeEEEE
Q 000085 2151 RGRL--IRRLVGVD--AHAVSLSSE-------------GVIMTWNKLQHTLSSFTLNGVL----VARAKLPLSGSIGCME 2209 (2342)
Q Consensus 2151 TGkl--IrsL~gh~--vssLSfSpD-------------G~IlVwdssdGsI~I~dlnG~~----L~s~~~~Hs~~ItsLa 2209 (2342)
++.. ...+.+|. +..++|+|+ +.+++.+..++.|++|++.... +......|...|.+++
T Consensus 132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~ 211 (297)
T 2pm7_B 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211 (297)
T ss_dssp SSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred CCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE
Confidence 7632 34556664 788999987 5689999999999999986422 3333456999999999
Q ss_pred EccCC---CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe---EEEEEe-
Q 000085 2210 ISLDG---HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK---VFHVLK- 2282 (2342)
Q Consensus 2210 fSPDG---k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk---~L~tL~- 2282 (2342)
|+|++ .+|++|+. |++|+|||+.+.. ....+.
T Consensus 212 ~sp~~~~~~~las~s~-----------------------------------------D~~v~iWd~~~~~~~~~~~~~~~ 250 (297)
T 2pm7_B 212 WSPTVLLRSYMASVSQ-----------------------------------------DRTCIIWTQDNEQGPWKKTLLKE 250 (297)
T ss_dssp ECCCCSSSEEEEEEET-----------------------------------------TSCEEEEEESSTTSCCEEEESSS
T ss_pred ECCCCCCceEEEEEEC-----------------------------------------CCcEEEEEeCCCCCccceeeeec
Confidence 99995 88998873 6779999987642 112221
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2283 LGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2283 lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
..|...|.+++|+|+|++|++++.||.|++|+..
T Consensus 251 ~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 251 EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 2678899999999999999999999999999954
No 34
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=7.2e-27 Score=283.50 Aligned_cols=241 Identities=13% Similarity=0.175 Sum_probs=201.0
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc---eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL---ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll---~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
.+.+++|+|+|++|++|+.|++|+|||+.++... ....+|.+.|++++|+|+|++|++|+.|++|++||+..+..
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~-- 95 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF-- 95 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E--
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe--
Confidence 3567999999999999999999999999887533 23468999999999999999999999999999999876311
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG-- 2152 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG-- 2152 (2342)
..+..+.+|...|++++|+|++++|++|+.||+|++||++++
T Consensus 96 ------------------------------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 96 ------------------------------------ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp ------------------------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred ------------------------------------EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence 234567899999999999999999999999999999999876
Q ss_pred -eEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCce--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2153 -RLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL--VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2153 -klIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~--L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
.++..+.+|. +..++|+|+|.+++.+..++.+++|+..... ......+|...|++++|+|+|++|++|+.|+.
T Consensus 140 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-- 217 (345)
T 3fm0_A 140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-- 217 (345)
T ss_dssp EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--
T ss_pred eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe--
Confidence 3456676664 7889999999999999999999999987542 22334459999999999999999999986544
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC---------------CCeEEEEEecCCCCCeEEE
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH---------------TLKVFHVLKLGEGQDITAL 2292 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~---------------Tgk~L~tL~lgHs~~ItsL 2292 (2342)
|+|||.. ..+++.++...|...|.++
T Consensus 218 ---------------------------------------v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 258 (345)
T 3fm0_A 218 ---------------------------------------VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDI 258 (345)
T ss_dssp ---------------------------------------EEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEE
T ss_pred ---------------------------------------EEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEE
Confidence 5555431 2245666664588999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2293 ALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2293 afSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
+|+|++..|++++.|+.|++|+...
T Consensus 259 ~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 259 AWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp EECTTTCCEEEEETTSCEEEEEECT
T ss_pred EEecCCCEEEEEeCCCeEEEEEeCC
Confidence 9999999999999999999999653
No 35
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-26 Score=270.54 Aligned_cols=272 Identities=13% Similarity=0.124 Sum_probs=231.2
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
..+.+++| +++++|++|+.||.|++||+.+++....+..|...|++++|+|++++|++|+.|+.|++|++.........
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence 34566899 99999999999999999999999999999999999999999999999999999999999999875322221
Q ss_pred --ccCCCCCCccccccCCCCCceeecCCCc-cccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC
Q 000085 2077 --TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2077 --~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
...+...+.++.+ ++..++++..++. ..|+.......+.+|...|.+++|++ ++.++++++.||.|++|| .+
T Consensus 98 ~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~ 173 (313)
T 3odt_A 98 YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--ND 173 (313)
T ss_dssp CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TT
T ss_pred cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cC
Confidence 3456677777777 5778888877765 55887778889999999999999998 899999999999999999 56
Q ss_pred eEEEEEec-C--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC
Q 000085 2153 RLIRRLVG-V--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229 (2342)
Q Consensus 2153 klIrsL~g-h--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~ 2229 (2342)
+.+..+.. + .+..+++++++. ++.+..++.+++|++...........|...|++++|+|+|. +++|+.
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~------- 244 (313)
T 3odt_A 174 KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGE------- 244 (313)
T ss_dssp EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEET-------
T ss_pred ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEec-------
Confidence 67777765 3 378999999999 77888999999999975444444456999999999999994 666652
Q ss_pred CcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCc
Q 000085 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQ 2309 (2342)
Q Consensus 2230 i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGs 2309 (2342)
||.|++||+.+++.+..+. .|...|++++|+|+++ +++++.||.
T Consensus 245 ----------------------------------dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~dg~ 288 (313)
T 3odt_A 245 ----------------------------------DRTVRIWSKENGSLKQVIT-LPAISIWSVDCMSNGD-IIVGSSDNL 288 (313)
T ss_dssp ----------------------------------TSEEEEECTTTCCEEEEEE-CSSSCEEEEEECTTSC-EEEEETTSC
T ss_pred ----------------------------------CCEEEEEECCCCceeEEEe-ccCceEEEEEEccCCC-EEEEeCCCc
Confidence 7889999999999999998 8889999999999998 678999999
Q ss_pred EEEEeCCCC
Q 000085 2310 LIVFTDPAL 2318 (2342)
Q Consensus 2310 IrVWDi~sL 2318 (2342)
|++|+....
T Consensus 289 i~iw~~~~~ 297 (313)
T 3odt_A 289 VRIFSQEKS 297 (313)
T ss_dssp EEEEESCGG
T ss_pred EEEEeCCCC
Confidence 999996544
No 36
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=8.3e-27 Score=273.71 Aligned_cols=273 Identities=14% Similarity=0.158 Sum_probs=217.5
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc--cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS--GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~--GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
++|+||+++ +||+|. |++|+|||+.++++++.+. +|...|+|++|+|++++|+||+.|++|++||+.+++.....
T Consensus 29 ~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~- 105 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM- 105 (318)
T ss_dssp BCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred eEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe-
Confidence 459999886 777775 9999999999999887664 67889999999999999999999999999999998766554
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccc-ccc---CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRR-RRI---EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i---~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
..+...+ ..+++++..++++..++... +.. ...+..+.+|...+.++.+++++.++++++.||+|++||+++++
T Consensus 106 ~~h~~~~--~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 106 TSHSARV--GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp ECCSSCE--EEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred cCccceE--EEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence 2333333 34556677888887776543 222 34567788999999999999999999999999999999998865
Q ss_pred EE----EEEecC--CcEEEEEecCCcEEE---EEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2154 LI----RRLVGV--DAHAVSLSSEGVIMT---WNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2154 lI----rsL~gh--~vssLSfSpDG~IlV---wdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
.. .....+ .+..+++++++..++ .+..++.+++|+......... ..+...+..+.|++++..+++++.
T Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg-- 260 (318)
T 4ggc_A 184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHG-- 260 (318)
T ss_dssp TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEEC--
T ss_pred ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccceEEEEE--
Confidence 32 222222 367788888765333 345668899999875433322 237788999999999999998751
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS 2304 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG 2304 (2342)
. .|+.|+|||+.+++++.++. +|.+.|++++|+|||++|+||
T Consensus 261 ~-------------------------------------~d~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 261 F-------------------------------------AQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp T-------------------------------------TTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEE
T ss_pred c-------------------------------------CCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEE
Confidence 1 27889999999999999999 999999999999999999999
Q ss_pred eCCCcEEEEeCCCC
Q 000085 2305 TADKQLIVFTDPAL 2318 (2342)
Q Consensus 2305 SsDGsIrVWDi~sL 2318 (2342)
+.||+|+|||+..+
T Consensus 303 s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 303 AADETLRLWRCFEL 316 (318)
T ss_dssp ETTTEEEEECCSCC
T ss_pred ecCCeEEEEECCCC
Confidence 99999999996543
No 37
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.95 E-value=7.7e-27 Score=282.35 Aligned_cols=257 Identities=15% Similarity=0.170 Sum_probs=215.3
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc----c
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK----T 2030 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk----l 2030 (2342)
++++.+++++.|+++++|+..++.. ...+..|. ..+.+++|+|++++|++|+.|+.|++|++.++. .
T Consensus 65 ~d~~~l~s~s~Dg~v~iWd~~~~~~------~~~~~~~~---~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~ 135 (340)
T 1got_B 65 TDSRLLLSASQDGKLIIWDSYTTNK------VHAIPLRS---SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV 135 (340)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCE------EEEEECSS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCCc------ceEeecCC---ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCccee
Confidence 4577899999999999999765321 12223333 345679999999999999999999999998753 4
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI 2109 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i 2109 (2342)
...+.+|.+.|+|+.|++++ .+++|+.|++|++||+.++.....+ ..|...+.+++++|++..+++++.|+. ..|+.
T Consensus 136 ~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~ 213 (340)
T 1got_B 136 SRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213 (340)
T ss_dssp EEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 56788999999999999876 4899999999999999987655443 467788999999999999999988875 45765
Q ss_pred --CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC----CcEEEEEecCCcEEEEEeCCCe
Q 000085 2110 --EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV----DAHAVSLSSEGVIMTWNKLQHT 2183 (2342)
Q Consensus 2110 --~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh----~vssLSfSpDG~IlVwdssdGs 2183 (2342)
......+.+|...|++++|+|++.++++|+.||+|++||+++++.+..+..+ .+..++|+|+|.+++.+..++.
T Consensus 214 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~ 293 (340)
T 1got_B 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293 (340)
T ss_dssp TTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe
Confidence 4567889999999999999999999999999999999999999988887643 3789999999999999999999
Q ss_pred EEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2184 LSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2184 I~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
+++|++..........+|...|++++|+|+|.+|++|+.
T Consensus 294 i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 332 (340)
T 1got_B 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcC
Confidence 999998654444444569999999999999999999974
No 38
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.95 E-value=2e-26 Score=276.60 Aligned_cols=235 Identities=17% Similarity=0.273 Sum_probs=203.5
Q ss_pred eeEEEEEcCCC-CEEEEEEcCCcEEEEecCC-----cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc
Q 000085 1998 SSAVVSITHDK-EIITGGHVDGSIKLLTSDG-----AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 1998 Svt~VafSpDG-klLASGS~DGsIrVWDl~t-----gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
.+.+++|+|++ ++|++|+.|++|++|++.+ +..+..+.+|...|++++|+|++++|+||+.|++|++||+.++.
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~ 98 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred eEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 45669999976 7999999999999999864 34567889999999999999999999999999999999998752
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
.+..+.+|...|.+++|+|++.++++|+.||+|++||++
T Consensus 99 ----------------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~- 137 (319)
T 3frx_A 99 ----------------------------------------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK- 137 (319)
T ss_dssp ----------------------------------------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-
T ss_pred ----------------------------------------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-
Confidence 345678999999999999999999999999999999996
Q ss_pred CeEEEEEecCC--cEEEEEecC------CcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2152 GRLIRRLVGVD--AHAVSLSSE------GVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2152 GklIrsL~gh~--vssLSfSpD------G~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
+.++..+.+|. +..++++|. +..++.+..++.+++|++...........|...|++++|+|+|++|++|+.
T Consensus 138 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~- 216 (319)
T 3frx_A 138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK- 216 (319)
T ss_dssp SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET-
T ss_pred CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 56777887775 677888874 458888999999999999876666566679999999999999999999973
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEE
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaS 2303 (2342)
||.|++||+.+++++..+. +...|.+++|+|++.+|++
T Consensus 217 ----------------------------------------dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~ 254 (319)
T 3frx_A 217 ----------------------------------------DGEIMLWNLAAKKAMYTLS--AQDEVFSLAFSPNRYWLAA 254 (319)
T ss_dssp ----------------------------------------TCEEEEEETTTTEEEEEEE--CCSCEEEEEECSSSSEEEE
T ss_pred ----------------------------------------CCeEEEEECCCCcEEEEec--CCCcEEEEEEcCCCCEEEE
Confidence 7889999999999999887 4568999999999999988
Q ss_pred EeCCCcEEEEeCCC
Q 000085 2304 STADKQLIVFTDPA 2317 (2342)
Q Consensus 2304 GSsDGsIrVWDi~s 2317 (2342)
++.+ .+++|+...
T Consensus 255 ~~~~-~i~v~~~~~ 267 (319)
T 3frx_A 255 ATAT-GIKVFSLDP 267 (319)
T ss_dssp EETT-EEEEEEETT
T ss_pred EcCC-CcEEEEeCc
Confidence 8755 599999653
No 39
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.95 E-value=8.4e-27 Score=277.64 Aligned_cols=282 Identities=12% Similarity=0.123 Sum_probs=224.4
Q ss_pred cceeEEEEEcCCCC-EEEEEEc---CCcEEEEecCCcccceec-ccCCCCeEEEEecCC---CCEEEEEeCCCceEEEec
Q 000085 1996 IRSSAVVSITHDKE-IITGGHV---DGSIKLLTSDGAKTLETA-SGHCAPVTCLALSSD---SNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1996 I~Svt~VafSpDGk-lLASGS~---DGsIrVWDl~tgkll~tL-~GHt~~VtcLAfSPD---G~~LaSGS~DGTVrVWDl 2067 (2342)
...+.+++|+|++. ++++|+. ||.|+|||+.+++..... .+|.+.|++++|+|+ +.+|++|+.|++|++||+
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 34566799999996 6667776 999999999998765443 479999999999998 699999999999999999
Q ss_pred cCCccccccccCCCCCCccc------cccCCCCCceeecCCCc-cccccCC---ceEEecCCCC----CeEEEE----Ee
Q 000085 2068 HRAFTSRTGTIEPSSGMGTP------GNSIGSSTPANASADKS-RRRRIEG---PIHVLRGHHR----EILCCC----VS 2129 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~sv------s~SpDG~~Las~s~D~s-~~~~i~~---~l~~L~GHs~----~Vt~Va----fS 2129 (2342)
.++.........+...+.++ ++++++..++++..++. ..|+... ++..+..|.+ .|++++ |+
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (357)
T 3i2n_A 98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN 177 (357)
T ss_dssp TSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC
T ss_pred CCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC
Confidence 98762222345667777777 67889999999988865 5566532 5677766655 899998 67
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCcEEEEEec---CCcEEEEEeCCCeEEEEEeCCceeeeec-----CC
Q 000085 2130 SDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG-VDAHAVSLSS---EGVIMTWNKLQHTLSSFTLNGVLVARAK-----LP 2200 (2342)
Q Consensus 2130 PDg~lLaSGS~DGtIrIWDLrTGklIrsL~g-h~vssLSfSp---DG~IlVwdssdGsI~I~dlnG~~L~s~~-----~~ 2200 (2342)
+++.++++|+.||.|++||+++++....... ..+..++|+| ++..++.+..++.+++|++......... ..
T Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 257 (357)
T 3i2n_A 178 QEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA 257 (357)
T ss_dssp -CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEEC
T ss_pred CCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCC
Confidence 8999999999999999999999988665543 3488999999 9999999999999999998643322111 25
Q ss_pred CCCCeEEEEEccCCC-EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC----
Q 000085 2201 LSGSIGCMEISLDGH-SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL---- 2275 (2342)
Q Consensus 2201 Hs~~ItsLafSPDGk-~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg---- 2275 (2342)
|...|++++|+|++. ++++|+. ||.|++||+.++
T Consensus 258 ~~~~v~~~~~~~~~~~~l~~~~~-----------------------------------------dg~i~iwd~~~~~~~~ 296 (357)
T 3i2n_A 258 HKSTVWQVRHLPQNRELFLTAGG-----------------------------------------AGGLHLWKYEYPIQRS 296 (357)
T ss_dssp CSSCEEEEEEETTEEEEEEEEET-----------------------------------------TSEEEEEEEECCSCC-
T ss_pred CcCCEEEEEECCCCCcEEEEEeC-----------------------------------------CCcEEEeecCCCcccc
Confidence 999999999999999 7888863 566777777543
Q ss_pred ---------------eEEEEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEeCCCCC
Q 000085 2276 ---------------KVFHVLKLGEGQDITALALNKDNTNLL-VSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2276 ---------------k~L~tL~lgHs~~ItsLafSPDG~~La-SGSsDGsIrVWDi~sLs 2319 (2342)
+.+..+. +|...|++++|+|++++|+ +|+.||.|++|++..++
T Consensus 297 ~~~~~g~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 297 KKDSEGIEMGVAGSVSLLQNVT-LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp -CCTTSCCCCCCCEEEEEEEEE-CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred cccCCCCccccccccceeeccc-cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 4667777 8999999999999999998 89999999999977653
No 40
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.95 E-value=1.7e-26 Score=285.13 Aligned_cols=238 Identities=18% Similarity=0.277 Sum_probs=202.0
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCC------------------CeEEEEecCCCCEEEEEeCC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCA------------------PVTCLALSSDSNFLVTGSQD 2059 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~------------------~VtcLAfSPDG~~LaSGS~D 2059 (2342)
.+.+++|+|||++|++|+ |++++||++.+++.+..+.+|.. .|++++|+|+|++|++|+.|
T Consensus 66 ~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d 144 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 144 (393)
T ss_dssp CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCC
Confidence 456799999999999987 78999999999988887766542 49999999999999999999
Q ss_pred CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2060 TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
++|+|||+.++. .+..+.+|...|++++|+|++.++++|+
T Consensus 145 ~~i~iwd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~p~~~~l~s~s 184 (393)
T 1erj_A 145 RLIRIWDIENRK----------------------------------------IVMILQGHEQDIYSLDYFPSGDKLVSGS 184 (393)
T ss_dssp SCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CeEEEEECCCCc----------------------------------------EEEEEccCCCCEEEEEEcCCCCEEEEec
Confidence 999999998742 3456789999999999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEEecC-CcEEEEEec-CCcEEEEEeCCCeEEEEEeCCc-eeeeec------CCCCCCeEEEEE
Q 000085 2140 DSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSS-EGVIMTWNKLQHTLSSFTLNGV-LVARAK------LPLSGSIGCMEI 2210 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGklIrsL~gh-~vssLSfSp-DG~IlVwdssdGsI~I~dlnG~-~L~s~~------~~Hs~~ItsLaf 2210 (2342)
.||+|++||++++++...+..+ .+..++++| +|.+++.+..++.+++|++... .+.... ..|...|++++|
T Consensus 185 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 264 (393)
T 1erj_A 185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 264 (393)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred CCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE
Confidence 9999999999999998888754 478899999 8999999999999999998643 332221 358999999999
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC------------CeEE
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT------------LKVF 2278 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T------------gk~L 2278 (2342)
+|+|++|++|+. |+.|++||+.+ +.+.
T Consensus 265 ~~~g~~l~s~s~-----------------------------------------d~~v~~wd~~~~~~~~~~~~~~~~~~~ 303 (393)
T 1erj_A 265 TRDGQSVVSGSL-----------------------------------------DRSVKLWNLQNANNKSDSKTPNSGTCE 303 (393)
T ss_dssp CTTSSEEEEEET-----------------------------------------TSEEEEEEC---------------CEE
T ss_pred CCCCCEEEEEeC-----------------------------------------CCEEEEEECCCCCCcccccCCCCCcce
Confidence 999999999973 67788998865 3345
Q ss_pred EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2279 HVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2279 ~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
..+. +|...|.+++|+|++.+|++|+.||.|++||....
T Consensus 304 ~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 304 VTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp EEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred EEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 5666 89999999999999999999999999999997654
No 41
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.95 E-value=2.4e-26 Score=279.82 Aligned_cols=266 Identities=12% Similarity=0.098 Sum_probs=214.8
Q ss_pred ceeEEEEEcCCC-CEEEEEEcCCcEEEEecCCcccceecc--cCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCcc
Q 000085 1997 RSSAVVSITHDK-EIITGGHVDGSIKLLTSDGAKTLETAS--GHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1997 ~Svt~VafSpDG-klLASGS~DGsIrVWDl~tgkll~tL~--GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
..+.+++|+|++ ++|++|+.||.|+|||+.+++....+. +|.+.|++++|+| ++++|++|+.|++|++||+.+..
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~- 152 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV- 152 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-
Confidence 346679999999 899999999999999999888776665 7999999999999 78999999999999999998521
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
.. ......+|...|++++|+|++.++++|+.||.|++||+ ++
T Consensus 153 ~~-------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~ 194 (383)
T 3ei3_B 153 IQ-------------------------------------VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DG 194 (383)
T ss_dssp EE-------------------------------------EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TS
T ss_pred eE-------------------------------------EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CC
Confidence 10 11112346688999999999999999999999999999 67
Q ss_pred eEEEEEecCC--cEEEEEecCCc-EEEEEeCCCeEEEEEeCC-----ceeeeecCCCCCCeEEEEEcc-CCCEEEEEeCC
Q 000085 2153 RLIRRLVGVD--AHAVSLSSEGV-IMTWNKLQHTLSSFTLNG-----VLVARAKLPLSGSIGCMEISL-DGHSALIGVNS 2223 (2342)
Q Consensus 2153 klIrsL~gh~--vssLSfSpDG~-IlVwdssdGsI~I~dlnG-----~~L~s~~~~Hs~~ItsLafSP-DGk~LaSGS~D 2223 (2342)
+.+..+..|. +..++|+|++. +++.+..++.+++|++.. ..+... .|...|++++|+| +|.++++++.+
T Consensus 195 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d 272 (383)
T 3ei3_B 195 HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQR 272 (383)
T ss_dssp CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESS
T ss_pred CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCC
Confidence 8888888765 78999999999 899999999999999973 233322 5999999999999 99999999987
Q ss_pred CCCCCCCcccccccCCCCCCc----------------------------cccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGT----------------------------EDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~----------------------------iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
+. ..+|++....... ..|+++... .+..|+.|+|||+.++
T Consensus 273 ~~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~------s~s~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 273 NE------IRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL------LLNDKRTIDIYDANSG 340 (383)
T ss_dssp SE------EEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT------CTTCCCCEEEEETTTC
T ss_pred Cc------EEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc------ccCCCCeEEEEecCCC
Confidence 76 4455554322100 112222211 3347999999999999
Q ss_pred eEEEEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2276 KVFHVLKLG-EGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2276 k~L~tL~lg-Hs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+++..+... |...+.+++|+|++++|++|+ ||.|++|++.
T Consensus 341 ~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 341 GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 999999832 567788889999999999997 9999999964
No 42
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.5e-27 Score=287.04 Aligned_cols=279 Identities=12% Similarity=0.096 Sum_probs=234.3
Q ss_pred eeEEEEEcCCCC-EEEEE----------EcCCcEEEEecCCcc---cceecccCCCCeEEEEecCCCCEEEEEeCCCceE
Q 000085 1998 SSAVVSITHDKE-IITGG----------HVDGSIKLLTSDGAK---TLETASGHCAPVTCLALSSDSNFLVTGSQDTTIL 2063 (2342)
Q Consensus 1998 Svt~VafSpDGk-lLASG----------S~DGsIrVWDl~tgk---ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVr 2063 (2342)
.+.+++|+|+|+ +|++| +.|+.|+|||+.++. .+..+ .|...|++++|+|++++|++|+.|++|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 355689999997 99999 899999999999875 33333 5899999999999999999999999999
Q ss_pred EEeccCC---ccccccccCCCCCCccccccCC-CCCceeecCCCc-cccccCCce-----------EEecCCCCCeEEEE
Q 000085 2064 LWRIHRA---FTSRTGTIEPSSGMGTPGNSIG-SSTPANASADKS-RRRRIEGPI-----------HVLRGHHREILCCC 2127 (2342)
Q Consensus 2064 VWDl~tg---~~i~t~~~~~~~~V~svs~SpD-G~~Las~s~D~s-~~~~i~~~l-----------~~L~GHs~~Vt~Va 2127 (2342)
+||+.+. .........+...+.++.++|+ +..++++..++. ..|+..... ..+.+|...|++++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 9999872 2122224567888999999998 788888887764 556654321 23467999999999
Q ss_pred EecC-CCEEEEEeCCCcEEEEECCCCeEEEEEecC--------CcEEEEEecCC-cEEEEEeCCC---eEEEEEeCCc-e
Q 000085 2128 VSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGV--------DAHAVSLSSEG-VIMTWNKLQH---TLSSFTLNGV-L 2193 (2342)
Q Consensus 2128 fSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh--------~vssLSfSpDG-~IlVwdssdG---sI~I~dlnG~-~ 2193 (2342)
|+|+ +.++++++.||.|++||+++++.+..+..+ .+..++|+|+| .+++.+..++ .|++|++... .
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~ 252 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT 252 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC
Confidence 9999 789999999999999999999999988764 37899999998 6888888888 9999999753 3
Q ss_pred eeeecC-CCCCCeEEEEEcc-CCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEE
Q 000085 2194 VARAKL-PLSGSIGCMEISL-DGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLD 2271 (2342)
Q Consensus 2194 L~s~~~-~Hs~~ItsLafSP-DGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWD 2271 (2342)
...... .|...|++++|+| ++.++++|+. |+.|++||
T Consensus 253 ~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-----------------------------------------dg~v~~wd 291 (416)
T 2pm9_A 253 PLQTLNQGHQKGILSLDWCHQDEHLLLSSGR-----------------------------------------DNTVLLWN 291 (416)
T ss_dssp CSBCCCSCCSSCEEEEEECSSCSSCEEEEES-----------------------------------------SSEEEEEC
T ss_pred CcEEeecCccCceeEEEeCCCCCCeEEEEeC-----------------------------------------CCCEEEee
Confidence 333334 6999999999999 9999999873 67899999
Q ss_pred CCCCeEEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCC
Q 000085 2272 LHTLKVFHVLKLGEGQDITALALNKDN-TNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2272 L~Tgk~L~tL~lgHs~~ItsLafSPDG-~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
+.+++++..+. +|...|++++|+|++ .+|++++.||.|++|++....
T Consensus 292 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 292 PESAEQLSQFP-ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp SSSCCEEEEEE-CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred CCCCccceeec-CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 99999999998 899999999999999 899999999999999976654
No 43
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-27 Score=307.96 Aligned_cols=298 Identities=12% Similarity=0.034 Sum_probs=208.7
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC------CCEEEEEEcCCcEEEEecCCc
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD------KEIITGGHVDGSIKLLTSDGA 2028 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD------GklLASGS~DGsIrVWDl~tg 2028 (2342)
+++..+++++.|++|++|+..++... ......+..+.+ .+..++|+|+ +.+||+|+.||+|+|||+.++
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~--~~~~~~l~~~~~---~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~ 245 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLH--CVKVQTIVHSFG---EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN 245 (524)
T ss_dssp -----------CEEEEEEEEETTTCC--EEEEEEEEECCC---SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCC
T ss_pred hhhhhhccCCCCceEEEEEccCCCCC--ceEEEEEEecCC---cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCC
Confidence 45677899999999999986542211 111112233333 3566999997 579999999999999999876
Q ss_pred cc-----------ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCce
Q 000085 2029 KT-----------LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPA 2097 (2342)
Q Consensus 2029 kl-----------l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~La 2097 (2342)
.. ..++.+|...|+|++|+++ ..|++|+.||+|++||+.++.
T Consensus 246 ~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~-------------------------- 298 (524)
T 2j04_B 246 ATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPE-------------------------- 298 (524)
T ss_dssp SSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCS--------------------------
T ss_pred ccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCC--------------------------
Confidence 42 2367899999999999986 489999999999999998631
Q ss_pred eecCCCccccccCCceEEecCCCCCeEEE--EEecCC-CEEEEEeCCCcEEEEECCCCeEEEEEecCC----cEEEEEec
Q 000085 2098 NASADKSRRRRIEGPIHVLRGHHREILCC--CVSSDL-GVVVSCSDSSDLLLHSIRRGRLIRRLVGVD----AHAVSLSS 2170 (2342)
Q Consensus 2098 s~s~D~s~~~~i~~~l~~L~GHs~~Vt~V--afSPDg-~lLaSGS~DGtIrIWDLrTGklIrsL~gh~----vssLSfSp 2170 (2342)
.+...+.+|...|++| +|++++ .+|+|||.||+|+|||+++++++..+.+|. +..++|+|
T Consensus 299 -------------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp 365 (524)
T 2j04_B 299 -------------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP 365 (524)
T ss_dssp -------------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred -------------CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence 1234578899999999 567887 899999999999999999988766665542 57899999
Q ss_pred CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCC--------
Q 000085 2171 EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS-------- 2242 (2342)
Q Consensus 2171 DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~-------- 2242 (2342)
+|..++.+..++.+++|++..........+|.+.|++|+|+|+|++|++|+.|+.. ++|+......
T Consensus 366 ~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv------~lwd~~~~~~~~~~~~~~ 439 (524)
T 2j04_B 366 QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSL------IITNAARRLLHGIKNSSA 439 (524)
T ss_dssp TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEE------ECCBSCSSTTTCC-----
T ss_pred CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEE------EEEechHhhccccccCcc
Confidence 99999999999999999987433222334599999999999999999999988883 4454332110
Q ss_pred -------CccccccccccccCCCCccCCCCeEEEEE------CC-CCeEEEEEecCCCCCeEEEEEecCC---CEEEEEe
Q 000085 2243 -------GTEDFDLASDQSVDNNRFDFPSPSICFLD------LH-TLKVFHVLKLGEGQDITALALNKDN---TNLLVST 2305 (2342)
Q Consensus 2243 -------~~iaFspd~~~s~ss~~ias~DGsIrIWD------L~-Tgk~L~tL~lgHs~~ItsLafSPDG---~~LaSGS 2305 (2342)
..+.|+++ .+.+++|| .. ++.++.++. +|...|.+|+|+|++ .+|++|+
T Consensus 440 ~~~~~~v~~v~~sp~-------------g~~~~~~~~~~~~~~~~~g~~~~~l~-gh~~~V~~Vafsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 440 TQKSLRLWKWDYSIK-------------DDKYRIDSSYEVYPLTVNDVSKAKID-AHGINITCTKWNETSAGGKCYAFSN 505 (524)
T ss_dssp -CCCCEEEECBCCSS-------------SCEEEECCCCCCCC--------------CCCSCCCEEECCSTTTTTEEEEEC
T ss_pred ceeeeEEEEeccCCC-------------CCeEEccCCceecccccCCcceeeec-CCCceEEEEECCCCCCccHHHHhhc
Confidence 01122222 12345544 22 466677777 899999999999996 4999999
Q ss_pred CCCcEEEEeCCC
Q 000085 2306 ADKQLIVFTDPA 2317 (2342)
Q Consensus 2306 sDGsIrVWDi~s 2317 (2342)
.||.|+||++..
T Consensus 506 ~~g~vrlw~l~~ 517 (524)
T 2j04_B 506 SAGLLTLEYLSL 517 (524)
T ss_dssp TTSEEEEEECSC
T ss_pred cCceEEEEEccc
Confidence 999999999543
No 44
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=8.8e-28 Score=290.88 Aligned_cols=310 Identities=15% Similarity=0.091 Sum_probs=216.8
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCc--ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc-ccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGA--KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF-TSR 2074 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tg--kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~-~i~ 2074 (2342)
.+.+++|+|+|++|++|+.|+.|+|||+.++ +.+..+.+|.+.|++++|+|++++|++|+.|++|++||+.++. ...
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 3456999999999999999999999999988 7888999999999999999999999999999999999999875 111
Q ss_pred -ccccCCCCCCccccccCCCCCceeecCCCc-cccccCC-----ceEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2075 -TGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG-----PIHVLRG-HHREILCCCVSSDLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2075 -t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~-----~l~~L~G-Hs~~Vt~VafSPDg~lLaSGS~DGtIrI 2146 (2342)
.....+...+.++.++|++..++++..++. ..|+... ....+.+ |...|++++|+|++.++++|+.||+|++
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~i 172 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEE
T ss_pred eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEE
Confidence 114567888999999999999999988865 4566532 3677777 9999999999999999999999999999
Q ss_pred EECC------------------CCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCcee----eeecCCCC
Q 000085 2147 HSIR------------------RGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLV----ARAKLPLS 2202 (2342)
Q Consensus 2147 WDLr------------------TGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L----~s~~~~Hs 2202 (2342)
||++ .++++..+ +|. +..++|+|+|.+++.+..++.|++|++..... ......|.
T Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 251 (377)
T 3dwl_C 173 LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ 251 (377)
T ss_dssp EEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSS
T ss_pred EEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC
Confidence 9985 35566666 554 78999999999999999999999999975433 33334589
Q ss_pred CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcc-cccccccccc-----------C-CCCccC--CCCeE
Q 000085 2203 GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTE-DFDLASDQSV-----------D-NNRFDF--PSPSI 2267 (2342)
Q Consensus 2203 ~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~i-aFspd~~~s~-----------s-s~~ias--~DGsI 2267 (2342)
..|.+++|+|+|++|++|+.++. .+|.......... .......... . .....+ .....
T Consensus 252 ~~v~~~~~s~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (377)
T 3dwl_C 252 LPLRSLLWANESAIVAAGYNYSP-------ILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTF 324 (377)
T ss_dssp SCEEEEEEEETTEEEEEESSSSE-------EEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------
T ss_pred CceEEEEEcCCCCEEEEEcCCcE-------EEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccc
Confidence 99999999999999999875443 1233321110000 0000000000 0 000000 00111
Q ss_pred EEEECCC-CeEEEEEecCCCCCeEEEEEecCC-C---EEEEEeCCCcEEEEeC
Q 000085 2268 CFLDLHT-LKVFHVLKLGEGQDITALALNKDN-T---NLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2268 rIWDL~T-gk~L~tL~lgHs~~ItsLafSPDG-~---~LaSGSsDGsIrVWDi 2315 (2342)
...+... ......+...|...|+++++.++. . .|+|||.||.|+|||+
T Consensus 325 ~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 325 RNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 1111110 001112233699999999976644 3 6999999999999983
No 45
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.95 E-value=1e-26 Score=298.08 Aligned_cols=306 Identities=15% Similarity=0.127 Sum_probs=237.9
Q ss_pred ceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCC---CeEEEEecCC-CCEEEEEeCCCceEEEeccCCc
Q 000085 1997 RSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCA---PVTCLALSSD-SNFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 1997 ~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~---~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
..+.+++|+|+++ ++++|+.|+.|++||+.+++.+..+.+|.+ .|++++|+|+ +++|++|+.|++|++||+.++.
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 3467799999998 899999999999999999999999999999 9999999999 9999999999999999999887
Q ss_pred ccccccc---CCCCCCccccccCCCCCceeecCCCc-cccccC--CceEEecCC----CCCeEEEEEecCCCEEEEEeCC
Q 000085 2072 TSRTGTI---EPSSGMGTPGNSIGSSTPANASADKS-RRRRIE--GPIHVLRGH----HREILCCCVSSDLGVVVSCSDS 2141 (2342)
Q Consensus 2072 ~i~t~~~---~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~--~~l~~L~GH----s~~Vt~VafSPDg~lLaSGS~D 2141 (2342)
....... .+...+..+.++ ++..++++..++. ..|+.. ..+..+..| ...+.++.|+ ++.++++++.|
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 318 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLD 318 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETT
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECC
Confidence 6666534 788889999999 9999998888764 556653 455666666 4678888886 89999999999
Q ss_pred CcEEEEECCCCeEEEEEecCC--cEEEEE------------------------------------------ecCC-----
Q 000085 2142 SDLLLHSIRRGRLIRRLVGVD--AHAVSL------------------------------------------SSEG----- 2172 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrsL~gh~--vssLSf------------------------------------------SpDG----- 2172 (2342)
|.|++||+.+++.+..+.+|. +..+++ +.||
T Consensus 319 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~ 398 (615)
T 1pgu_A 319 GTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVN 398 (615)
T ss_dssp SCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEET
T ss_pred CCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEE
Confidence 999999999888877776542 111111 1122
Q ss_pred ----------------------------------------------------------cEEEEEeC-CCeEEEEEeCCce
Q 000085 2173 ----------------------------------------------------------VIMTWNKL-QHTLSSFTLNGVL 2193 (2342)
Q Consensus 2173 ----------------------------------------------------------~IlVwdss-dGsI~I~dlnG~~ 2193 (2342)
..++.+.. ++.+++|++.+..
T Consensus 399 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~ 478 (615)
T 1pgu_A 399 GITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE 478 (615)
T ss_dssp TEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEE
T ss_pred EcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcc
Confidence 22233333 6777777776544
Q ss_pred ee-eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC------------CCCcccccc----------c
Q 000085 2194 VA-RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK------------QSGTEDFDL----------A 2250 (2342)
Q Consensus 2194 L~-s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~------------~~~~iaFsp----------d 2250 (2342)
+. .....|...|++++|+|+|++|++|+.++. ..+|++... ....+.|++ +
T Consensus 479 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~------i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~ 552 (615)
T 1pgu_A 479 VSFDLKTPLRAKPSYISISPSETYIAAGDVMGK------ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 552 (615)
T ss_dssp EEEECSSCCSSCEEEEEECTTSSEEEEEETTSC------EEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred ccccccCCccCceEEEEECCCCCEEEEcCCCCe------EEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccC
Confidence 43 334458999999999999999999998877 344554322 122335555 2
Q ss_pred cccccCCCCccCCCCeEEEEECCCC-eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2251 SDQSVDNNRFDFPSPSICFLDLHTL-KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2251 ~~~s~ss~~ias~DGsIrIWDL~Tg-k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
... ...+..||.|++||+.++ +++..+. +|...|++++|+|+++ |++++.||.|++|++.
T Consensus 553 ~~~----l~~~~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 553 EDL----VATGSLDTNIFIYSVKRPMKIIKALN-AHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp CCE----EEEEETTSCEEEEESSCTTCCEEETT-SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred CCE----EEEEcCCCcEEEEECCCCceechhhh-cCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 221 122346999999999998 7777777 8999999999999999 9999999999999954
No 46
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.95 E-value=6.1e-27 Score=327.80 Aligned_cols=311 Identities=17% Similarity=0.180 Sum_probs=255.5
Q ss_pred cceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1996 IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1996 I~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
...+.+++|+|+|++|++|+.||+|+|||+.+++.+.++.+|.+.|++++|+|+|++|++|+.|++|+|||+.++.....
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 694 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT 694 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999876555
Q ss_pred cccCCCCCCccccccCCC--CCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2076 GTIEPSSGMGTPGNSIGS--STPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG--~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
. ..+...+.++.|++++ ..+++++.++. ..|+. ......+.+|.+.|++++|+|++.++++|+.||+|++||++
T Consensus 695 ~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~ 773 (1249)
T 3sfz_A 695 Y-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773 (1249)
T ss_dssp E-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGG
T ss_pred E-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCC
Confidence 4 4677889999999954 45677777764 45665 45678889999999999999999999999999999999998
Q ss_pred CCeEEEEEe-------------------------------------------------------cC--CcEEEEEecCCc
Q 000085 2151 RGRLIRRLV-------------------------------------------------------GV--DAHAVSLSSEGV 2173 (2342)
Q Consensus 2151 TGklIrsL~-------------------------------------------------------gh--~vssLSfSpDG~ 2173 (2342)
+++....+. +| .+..++|+|+|.
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 853 (1249)
T 3sfz_A 774 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH 853 (1249)
T ss_dssp GTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT
T ss_pred CCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC
Confidence 887655542 11 246788899999
Q ss_pred EEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC-------------
Q 000085 2174 IMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK------------- 2240 (2342)
Q Consensus 2174 IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~------------- 2240 (2342)
+++.+..++.+++|++...........|...|++++|+|+|.++++++.++. .++|+....
T Consensus 854 ~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~------v~vw~~~~~~~~~~~~~~~~~~ 927 (1249)
T 3sfz_A 854 LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT------IRVWETKKVCKNSAIVLKQEID 927 (1249)
T ss_dssp EEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC------EEEEEHHHHHSCCSSSEEEEEE
T ss_pred EEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCe------EEEEEccccceeeeecccceee
Confidence 9999999999999999866555555679999999999999999999998877 344543211
Q ss_pred -----------------------------------CCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCC
Q 000085 2241 -----------------------------------QSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGE 2285 (2342)
Q Consensus 2241 -----------------------------------~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgH 2285 (2342)
......++++... ...+..||.|++||+.+++.+..+. +|
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~----l~~g~~~g~i~i~d~~~~~~~~~~~-~h 1002 (1249)
T 3sfz_A 928 VVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY----VAFGDEDGAIKIIELPNNRVFSSGV-GH 1002 (1249)
T ss_dssp EEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSE----EEEEETTSCCEEEETTTTSCEEECC-CC
T ss_pred EEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCE----EEEEcCCCCEEEEEcCCCceeeecc-cC
Confidence 0111122232211 1222368999999999999888888 89
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2286 GQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2286 s~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
...|++++|+|+|++|++++.||.|++|+..+.
T Consensus 1003 ~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 1003 KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp SSCCCCEEECSSSSCEEEECSSSBEEEEETTTT
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 999999999999999999999999999997654
No 47
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=284.00 Aligned_cols=241 Identities=12% Similarity=0.051 Sum_probs=193.9
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCC-------c----ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEe
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDG-------A----KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWR 2066 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~t-------g----kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWD 2066 (2342)
.+.+++|+|||++|++|+ |+++++||... . ........|...|++++|+|++ .|++|+.||+|+|||
T Consensus 32 ~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd 109 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWE 109 (344)
T ss_dssp EEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEe
Confidence 356799999999999887 77778776321 1 1112233467889999999985 788999999999999
Q ss_pred ccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrI 2146 (2342)
+.++..... ....+.+|.+.|++++|+|++++|++|+.||+|++
T Consensus 110 ~~~~~~~~~------------------------------------~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 110 LDENETLIV------------------------------------SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153 (344)
T ss_dssp ECTTSSCEE------------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccCCCceeE------------------------------------eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 988543211 12345789999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCC--cEEEEEecCCc-EEEEEeCCCeEEEEEeC-CceeeeecC-CCCCCeEEEEEccC-CCEEEEE
Q 000085 2147 HSIRRGRLIRRLVGVD--AHAVSLSSEGV-IMTWNKLQHTLSSFTLN-GVLVARAKL-PLSGSIGCMEISLD-GHSALIG 2220 (2342)
Q Consensus 2147 WDLrTGklIrsL~gh~--vssLSfSpDG~-IlVwdssdGsI~I~dln-G~~L~s~~~-~Hs~~ItsLafSPD-Gk~LaSG 2220 (2342)
||++++++++++.+|. +..++|++++. +++.+..++.|++|++. ++....... .|...+++++|+|+ ++++++|
T Consensus 154 wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233 (344)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred EECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence 9999999999999875 78899999985 77888899999999986 333333322 26678999999995 5678887
Q ss_pred eCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC-C
Q 000085 2221 VNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN-T 2299 (2342)
Q Consensus 2221 S~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG-~ 2299 (2342)
+. ||.|++||+.+++++.++. +|...|++++|+|++ +
T Consensus 234 ~~-----------------------------------------dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~ 271 (344)
T 4gqb_B 234 DE-----------------------------------------NGTVSLVDTKSTSCVLSSA-VHSQCVTGLVFSPHSVP 271 (344)
T ss_dssp ET-----------------------------------------TSEEEEEESCC--CCEEEE-CCSSCEEEEEECSSSSC
T ss_pred cc-----------------------------------------CCcEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCe
Confidence 62 7889999999999999999 999999999999998 5
Q ss_pred EEEEEeCCCcEEEEeCCCC
Q 000085 2300 NLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2300 ~LaSGSsDGsIrVWDi~sL 2318 (2342)
+|++|+.||+|+|||....
T Consensus 272 ~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 272 FLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp CEEEEETTSCEEEECTTCC
T ss_pred EEEEEeCCCeEEEEECCCC
Confidence 7899999999999996654
No 48
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=2e-26 Score=270.34 Aligned_cols=286 Identities=11% Similarity=0.046 Sum_probs=210.2
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc----ccceecccCCCCeEEEEecC--CCCEEEEEeCCCceEEEecc
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA----KTLETASGHCAPVTCLALSS--DSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg----kll~tL~GHt~~VtcLAfSP--DG~~LaSGS~DGTVrVWDl~ 2068 (2342)
+...+.+++|+|++++|++|+.||.|+|||+.++ +....+.+|...|++++|+| ++++|++|+.||+|++||+.
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED 89 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence 3445677999999999999999999999999876 45677889999999999999 69999999999999999998
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrI 2146 (2342)
++...... ....++..+.+|...|++++|+|+ +.++++++.||.|++
T Consensus 90 ~~~~~~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i 138 (351)
T 3f3f_A 90 PDQEECSG-------------------------------RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRL 138 (351)
T ss_dssp TTSCTTSS-------------------------------CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEE
T ss_pred CCcccccc-------------------------------cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEE
Confidence 75321000 001345677889999999999999 999999999999999
Q ss_pred EECCCCeEEEEEe-------------cC--CcEEEEEecC---CcEEEEEeCCCeEEEEEeCCcee--eeecCCCCCCeE
Q 000085 2147 HSIRRGRLIRRLV-------------GV--DAHAVSLSSE---GVIMTWNKLQHTLSSFTLNGVLV--ARAKLPLSGSIG 2206 (2342)
Q Consensus 2147 WDLrTGklIrsL~-------------gh--~vssLSfSpD---G~IlVwdssdGsI~I~dlnG~~L--~s~~~~Hs~~It 2206 (2342)
||+++++.+..+. .+ .+..++++|+ +..++.+..++.+..|....... ......|...|+
T Consensus 139 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 218 (351)
T 3f3f_A 139 YDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIR 218 (351)
T ss_dssp EECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEE
T ss_pred ecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCccee
Confidence 9999876543322 11 3688999997 89999999999887776654332 333345999999
Q ss_pred EEEEccCC----CEEEEEeCCCCCCCCCcccccccCCCCCCcc-----------ccccccccccCCCCccCCCCeEEEEE
Q 000085 2207 CMEISLDG----HSALIGVNSSSTNNGSYDNIQGLNSKQSGTE-----------DFDLASDQSVDNNRFDFPSPSICFLD 2271 (2342)
Q Consensus 2207 sLafSPDG----k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~i-----------aFspd~~~s~ss~~ias~DGsIrIWD 2271 (2342)
+++|+|++ +++++|+.|+. .++|++........ .....................+.+|+
T Consensus 219 ~~~~~p~~~~~~~~l~s~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (351)
T 3f3f_A 219 SISWAPSIGRWYQLIATGCKDGR------IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS 292 (351)
T ss_dssp EEEECCCSSCSSEEEEEEETTSC------EEEEEEEECC---------------------------------------CC
T ss_pred EEEECCCCCCcceEEEEEcCCCe------EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecc
Confidence 99999998 89999998877 45666654321100 00111111111111112345566677
Q ss_pred CCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2272 LHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2272 L~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
..+.+.+..+. +|...|++++|+|++++|++|+.||.|++|+....
T Consensus 293 ~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 293 NLQVELLSEHD-DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SEEEEEEEEEC-TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cccccEEEEEe-cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 77778888888 89999999999999999999999999999997654
No 49
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.95 E-value=6.7e-27 Score=278.95 Aligned_cols=269 Identities=16% Similarity=0.199 Sum_probs=213.5
Q ss_pred EEecCCCceEEEecCCCCCCCcccccccceeccc--cCcceeEEEEEcCC----CCEEEEEEcCCcEEEEecCCccccee
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPRALAFAS--SGIRSSAVVSITHD----KEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs--~gI~Svt~VafSpD----GklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
+++++.++.+++|+..++... ..+..+. .+...+.+++|+|+ |++|++|+.||.|++||+.+++.+..
T Consensus 37 ~~~~~~~~~v~vw~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 110 (366)
T 3k26_A 37 VFATVGSNRVTLYECHSQGEI------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH 110 (366)
T ss_dssp EEEEEETTEEEEEEECGGGCE------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE
T ss_pred EEEECCCCEEEEEEcCCCcEE------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee
Confidence 344445559999997642211 1122121 13345778999999 67999999999999999999999999
Q ss_pred cccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2034 ASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
+.+|...|++++|+| ++++|++|+.||+|++||+.++.....
T Consensus 111 ~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------------------- 153 (366)
T 3k26_A 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI------------------------------------- 153 (366)
T ss_dssp EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEE-------------------------------------
T ss_pred ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEE-------------------------------------
Confidence 999999999999999 899999999999999999987532111
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe----------------------------cC--C
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV----------------------------GV--D 2162 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~----------------------------gh--~ 2162 (2342)
...+.+|...|++++|+|++.++++++.||.|++||+++++.+..+. .| .
T Consensus 154 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T 3k26_A 154 FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY 233 (366)
T ss_dssp ECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred ecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence 01126799999999999999999999999999999999876443322 13 3
Q ss_pred cEEEEEecCCcEEEEEeCCCeEEEEEeCCce--------------eeeecCCCCCCeEEEEEccC--CCEEEEEeCCCCC
Q 000085 2163 AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL--------------VARAKLPLSGSIGCMEISLD--GHSALIGVNSSST 2226 (2342)
Q Consensus 2163 vssLSfSpDG~IlVwdssdGsI~I~dlnG~~--------------L~s~~~~Hs~~ItsLafSPD--Gk~LaSGS~DGs~ 2226 (2342)
+..++++ |.+++.+..++.+++|++.... .......|...|++++|+|+ |++|++|+.
T Consensus 234 v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~---- 307 (366)
T 3k26_A 234 VDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ---- 307 (366)
T ss_dssp CCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT----
T ss_pred EEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec----
Confidence 6778887 7788999999999999986421 12233348889999999999 999998862
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe----EEEEEecCC--CCCeEEEEEecCCCE
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK----VFHVLKLGE--GQDITALALNKDNTN 2300 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk----~L~tL~lgH--s~~ItsLafSPDG~~ 2300 (2342)
||.|++||+.+++ ....+. +| ...|++++|+|++++
T Consensus 308 -------------------------------------dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~ 349 (366)
T 3k26_A 308 -------------------------------------VGKLYVWDLEVEDPHKAKCTTLT-HHKCGAAIRQTSFSRDSSI 349 (366)
T ss_dssp -------------------------------------TSCEEEEECCSSSGGGCEEEEEC-CTTCCSCEEEEEECTTSSE
T ss_pred -------------------------------------CCcEEEEECCCCCCccccceEEc-ccccCCceEEEEeCCCCCe
Confidence 6779999999875 444666 66 789999999999999
Q ss_pred EEEEeCCCcEEEEeC
Q 000085 2301 LLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2301 LaSGSsDGsIrVWDi 2315 (2342)
|++|+.||.|++||+
T Consensus 350 l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 350 LIAVCDDASIWRWDR 364 (366)
T ss_dssp EEEEETTSEEEEEEC
T ss_pred EEEEeCCCEEEEEEe
Confidence 999999999999995
No 50
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.95 E-value=3.6e-26 Score=272.28 Aligned_cols=258 Identities=13% Similarity=0.106 Sum_probs=215.3
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++|..+++++.|+++++|+..++. ....+..|. ..+.+++|+|++++|++|+.|++|++||+.+++.+..+
T Consensus 23 p~~~~l~s~~~dg~v~lWd~~~~~------~~~~~~~~~---~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 93 (304)
T 2ynn_A 23 PTEPWVLTTLYSGRVELWNYETQV------EVRSIQVTE---TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (304)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTE------EEEEEECCS---SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEcCCCcEEEEECCCCc------eeEEeeccC---CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 467788999999999999976521 112233333 34567999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccC-CCCCceeecCCCc-cccccC--
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI-GSSTPANASADKS-RRRRIE-- 2110 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp-DG~~Las~s~D~s-~~~~i~-- 2110 (2342)
.+|.+.|++++|+|++.+|+||+.|++|++||+.++.........|...+.+++|+| ++..+++++.|+. ..|+..
T Consensus 94 ~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~ 173 (304)
T 2ynn_A 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (304)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCS
T ss_pred eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999999999999999999999999886544444567888899999999 5678888888875 457653
Q ss_pred Cce-EEecCCCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEE
Q 000085 2111 GPI-HVLRGHHREILCCCVSS--DLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2111 ~~l-~~L~GHs~~Vt~VafSP--Dg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
.+. ....+|...|.+++|+| ++.++++|+.||+|++||+++++++.++.+|. +..++|+|++.+++.+..++.|+
T Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~ 253 (304)
T 2ynn_A 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253 (304)
T ss_dssp SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEE
Confidence 233 33346778999999986 67899999999999999999999999999885 78899999999999999999999
Q ss_pred EEEeCCceeeeecCCCCCCeEEEEEccCCC--EEEEEe
Q 000085 2186 SFTLNGVLVARAKLPLSGSIGCMEISLDGH--SALIGV 2221 (2342)
Q Consensus 2186 I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk--~LaSGS 2221 (2342)
+|+.....+......|...+++++|+|+|. ++++|+
T Consensus 254 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 254 IWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp EEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE
T ss_pred EEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec
Confidence 999976555555556889999999999885 577776
No 51
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.4e-27 Score=319.02 Aligned_cols=191 Identities=8% Similarity=0.026 Sum_probs=154.2
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++|..+++++.|++|++|+..+... ... ..+-..+.+++|+| |++|++|+.|++|+|||+.+++++.++
T Consensus 27 pdg~~lAsgs~Dg~I~lw~~~~~~~--------~~~--~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~ 95 (902)
T 2oaj_A 27 FTQNLLAIATVTGEVHIYGQQQVEV--------VIK--LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV 95 (902)
T ss_dssp TTTTEEEEEETTSEEEEECSTTCEE--------EEE--CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCcEE--------EEE--cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE
Confidence 5678899999999999998654110 011 11233577799999 889999999999999999999988888
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc----------ccccCCCCCCccccccCC-CCCceeecCCC
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR----------TGTIEPSSGMGTPGNSIG-SSTPANASADK 2103 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~----------t~~~~~~~~V~svs~SpD-G~~Las~s~D~ 2103 (2342)
. |.+.|++++|+|++++|++|+.||+|++||+.++.... .....+...+.+++|+|+ +..++++..++
T Consensus 96 ~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg 174 (902)
T 2oaj_A 96 F-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV 174 (902)
T ss_dssp E-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC
T ss_pred c-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCC
Confidence 6 77899999999999999999999999999998865421 112457788999999996 46777888777
Q ss_pred ccccccCC--ceEEecCC------------------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2104 SRRRRIEG--PIHVLRGH------------------HREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2104 s~~~~i~~--~l~~L~GH------------------s~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
...|+... ++..+.+| ...|++++|+|+|.+|++|+.||+|++||+++++++..
T Consensus 175 ~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 175 TLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp EEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred cEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence 66887643 44555554 57899999999999999999999999999999988754
No 52
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=7.8e-26 Score=279.01 Aligned_cols=272 Identities=16% Similarity=0.165 Sum_probs=223.3
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
+..+++++.|+.+++|+..++... ..+.. .+...+.+++|+|++++|++|+.||.|++||+.+++.+..+.+
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~------~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 174 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVS------ALAET--DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG 174 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEE------EEEEC--CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred CCCEEEEECCCeEEEeeCCCCcEe------Eeeec--CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC
Confidence 345677788999999997663221 11111 1334567799999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL 2116 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L 2116 (2342)
|...|++++| ++++|++|+.||+|++||+.... .....+
T Consensus 175 ~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~---------------------------------------~~~~~~ 213 (401)
T 4aez_A 175 HQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN---------------------------------------HQIGTL 213 (401)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS---------------------------------------CEEEEE
T ss_pred CCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc---------------------------------------ceeeEE
Confidence 9999999999 46899999999999999997531 234567
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCc-EEEEEe--CCCeEEEEEeC-
Q 000085 2117 RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGV-IMTWNK--LQHTLSSFTLN- 2190 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~-IlVwds--sdGsI~I~dln- 2190 (2342)
.+|...|.+++|+|++.++++|+.||.|++||+++++.+..+..|. +..++|+|+|. +++.+. .++.+++|++.
T Consensus 214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293 (401)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence 8899999999999999999999999999999999999999987764 78999999875 445443 68999999986
Q ss_pred CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2191 GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2191 G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
+..+... .+...|.+++|+|+|.++++++ |. .||.|++|
T Consensus 294 ~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~--g~-------------------------------------~dg~i~v~ 332 (401)
T 4aez_A 294 GARVNTV--DAGSQVTSLIWSPHSKEIMSTH--GF-------------------------------------PDNNLSIW 332 (401)
T ss_dssp CCEEEEE--ECSSCEEEEEECSSSSEEEEEE--CT-------------------------------------TTCEEEEE
T ss_pred CCEEEEE--eCCCcEEEEEECCCCCeEEEEe--ec-------------------------------------CCCcEEEE
Confidence 4444333 3778999999999999999863 11 27889999
Q ss_pred ECCCCeEEEE--EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2271 DLHTLKVFHV--LKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2271 DL~Tgk~L~t--L~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
|+.+++.... +. +|...|++++|+|++++|++++.||.|++|++....
T Consensus 333 ~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 333 SYSSSGLTKQVDIP-AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp EEETTEEEEEEEEE-CCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred ecCCccceeEEEec-CCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 9999765544 55 899999999999999999999999999999976553
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.95 E-value=9.4e-26 Score=281.35 Aligned_cols=301 Identities=17% Similarity=0.253 Sum_probs=249.7
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
+|..+++++.|+++++|+..++.. ...+..|.. .+.+++|+ ++++++|+.||+|++||+.+++.+..+.
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~~~~~------~~~~~~h~~---~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 196 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAVTGKC------LRTLVGHTG---GVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY 196 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCE------EEECCCCSS---CEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred cCCEEEEEECCCcEEEEECCCCcE------EEEEcCCCC---CEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC
Confidence 477899999999999999765321 122333443 45567776 6799999999999999999999999999
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCc
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGP 2112 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~ 2112 (2342)
+|...|++++|+ ++.+++|+.||+|++||+.++...... ..+...+.++.+ ++..++++..++. ..|+. ...
T Consensus 197 ~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~ 271 (445)
T 2ovr_B 197 GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETC 271 (445)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEE
T ss_pred CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcE
Confidence 999999999995 678999999999999999987655443 356667777777 7888888887765 44654 456
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeC-C
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN-G 2191 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dln-G 2191 (2342)
+..+.+|...|.+++| ++.++++|+.||+|++||+++++.+..+.+|.....++++++..++.+..+|.+++|++. +
T Consensus 272 ~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 272 LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp EEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred eEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCC
Confidence 7888999999999999 789999999999999999999999999998887666777788899999999999999986 4
Q ss_pred ceeeeecC--CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEE
Q 000085 2192 VLVARAKL--PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICF 2269 (2342)
Q Consensus 2192 ~~L~s~~~--~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrI 2269 (2342)
..+..... .|...|++++|+ +.++++|+. ||.|++
T Consensus 350 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-----------------------------------------dg~v~i 386 (445)
T 2ovr_B 350 QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD-----------------------------------------DGTVKL 386 (445)
T ss_dssp CEEEEECSTTSCSSCEEEEEEC--SSEEEEEET-----------------------------------------TSEEEE
T ss_pred cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeC-----------------------------------------CCeEEE
Confidence 44444332 288999999995 689998872 788999
Q ss_pred EECCCCeEEEEEe----cCCCCCeEEEEEecCCCEEEEEeCCCc----EEEEeCCC
Q 000085 2270 LDLHTLKVFHVLK----LGEGQDITALALNKDNTNLLVSTADKQ----LIVFTDPA 2317 (2342)
Q Consensus 2270 WDL~Tgk~L~tL~----lgHs~~ItsLafSPDG~~LaSGSsDGs----IrVWDi~s 2317 (2342)
||+.+++.+..+. .+|.+.|++++|+|++.+|++|+.||+ |.|||...
T Consensus 387 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 387 WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999999998882 267889999999999999999999998 99999643
No 54
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=8.8e-27 Score=286.43 Aligned_cols=259 Identities=15% Similarity=0.161 Sum_probs=212.3
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc-----
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK----- 2029 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk----- 2029 (2342)
++|..+++++.|+++++|+..++. ....+..|... +.+++|+|+|++|++|+.|+.|++||+.+..
T Consensus 76 p~~~~l~s~s~D~~v~iWd~~~~~------~~~~~~~h~~~---v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~ 146 (380)
T 3iz6_a 76 PEKNWIVSASQDGRLIVWNALTSQ------KTHAIKLHCPW---VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGN 146 (380)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTE------EEEEEECCCTT---CCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCS
T ss_pred CCCCEEEEEeCCCeEEEEECCCCc------cceEEecCCCC---EEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCC
Confidence 456788999999999999976521 12233444444 4558999999999999999999999987532
Q ss_pred --cceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCcccccc----ccCCCCCCccccccC-CCCCceeecC
Q 000085 2030 --TLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTG----TIEPSSGMGTPGNSI-GSSTPANASA 2101 (2342)
Q Consensus 2030 --ll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~----~~~~~~~V~svs~Sp-DG~~Las~s~ 2101 (2342)
....+.+|.+.|.++.|+|+ +..|+||+.|++|++||+.++.....+ ...+...+.++.+++ ++..+++++.
T Consensus 147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~ 226 (380)
T 3iz6_a 147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC 226 (380)
T ss_dssp STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET
T ss_pred ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC
Confidence 44678899999999999997 467999999999999999988765443 245677788888876 7888888888
Q ss_pred CCc-cccccC---CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---------cEEEEE
Q 000085 2102 DKS-RRRRIE---GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD---------AHAVSL 2168 (2342)
Q Consensus 2102 D~s-~~~~i~---~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~---------vssLSf 2168 (2342)
|+. ..|+.. ..+..+.+|.+.|++++|+|++.+++||+.||+|++||+++++.+..+..+. +..++|
T Consensus 227 D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (380)
T 3iz6_a 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306 (380)
T ss_dssp TSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE
T ss_pred CCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEE
Confidence 876 457653 5678899999999999999999999999999999999999999998886532 578999
Q ss_pred ecCCcEEEEEeCCCeEEEEEeCC-ceeeee---cCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2169 SSEGVIMTWNKLQHTLSSFTLNG-VLVARA---KLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2169 SpDG~IlVwdssdGsI~I~dlnG-~~L~s~---~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
+|+|.+++.+..+|.+++|+... ..+... ...|.+.|++++|+|||.+|++|+.
T Consensus 307 s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 364 (380)
T 3iz6_a 307 SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW 364 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred CCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence 99999999999999999999863 333222 1359999999999999999999973
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=8.2e-26 Score=282.20 Aligned_cols=303 Identities=15% Similarity=0.198 Sum_probs=239.5
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
++..+++++.|++|++|+..++. ....+..|. ..+.+++|++++ +|++|+.||+|++||+.+++.+..+.
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~------~~~~~~~h~---~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~ 200 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKK------FLLQLSGHD---GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFE 200 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTE------EEEEECCCS---SCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEcCCCcEEEEECCCCc------EEEEEeCCC---cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEEC
Confidence 46788999999999999976521 122233344 456679999988 99999999999999999999999999
Q ss_pred cCCCCeEEEEec--CCCCEEEEEeCCCceEEEeccCCcccccc----------------------ccCCCCCCccccccC
Q 000085 2036 GHCAPVTCLALS--SDSNFLVTGSQDTTILLWRIHRAFTSRTG----------------------TIEPSSGMGTPGNSI 2091 (2342)
Q Consensus 2036 GHt~~VtcLAfS--PDG~~LaSGS~DGTVrVWDl~tg~~i~t~----------------------~~~~~~~V~svs~Sp 2091 (2342)
+|.+.|++++|+ +++.+|++|+.|++|++||+.+....... ...+...+. .+++
T Consensus 201 ~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~ 278 (464)
T 3v7d_B 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSG 278 (464)
T ss_dssp CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEE--EEEE
T ss_pred CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEE--EEcC
Confidence 999999999998 57899999999999999999876533211 122333333 3467
Q ss_pred CCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEE
Q 000085 2092 GSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSL 2168 (2342)
Q Consensus 2092 DG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSf 2168 (2342)
++..++++..++. ..|+. ..++..+.+|...|++++|+|++.++++|+.||+|++||+++++++..+.+|.....++
T Consensus 279 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 358 (464)
T 3v7d_B 279 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 358 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 7888888887765 44665 45678889999999999999999999999999999999999999999999886443344
Q ss_pred ecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccc
Q 000085 2169 SSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFD 2248 (2342)
Q Consensus 2169 SpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFs 2248 (2342)
..++..++.+..+|.+++|++...... ....|...+..++|+++++++++|+
T Consensus 359 ~~~~~~l~s~s~dg~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~--------------------------- 410 (464)
T 3v7d_B 359 RLSDKFLVSAAADGSIRGWDANDYSRK-FSYHHTNLSAITTFYVSDNILVSGS--------------------------- 410 (464)
T ss_dssp EECSSEEEEEETTSEEEEEETTTCCEE-EEEECTTCCCEEEEEECSSEEEEEE---------------------------
T ss_pred EEcCCEEEEEeCCCcEEEEECCCCcee-eeecCCCCccEEEEEeCCCEEEEec---------------------------
Confidence 444788999999999999999753222 1123777888999999999999886
Q ss_pred cccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2249 LASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2249 pd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
||.|++||+.+++.+..+..+|...|++++|+ ++..+++++.||.+.+|-
T Consensus 411 ---------------dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 411 ---------------ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp ---------------TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred ---------------CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 57899999999999987555899999999997 444455556777666554
No 56
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.95 E-value=1.8e-25 Score=277.73 Aligned_cols=273 Identities=15% Similarity=0.164 Sum_probs=220.7
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
.+..|+.+ .|++|++|+..++.... .+.. ..+...|++|+|+|+|++|++|+.||+|+|||+.+++.+..+.
T Consensus 115 ~~n~lAvg-ld~tV~lWd~~tg~~~~------~~~~-~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~ 186 (420)
T 4gga_A 115 SGNVLAVA-LDNSVYLWSASSGDILQ------LLQM-EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 186 (420)
T ss_dssp TTSEEEEE-ETTEEEEEETTTCCEEE------EEEC-CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCEEEEE-eCCEEEEEECCCCCEEE------EEEe-cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe
Confidence 34445554 58899999987743211 1121 1233457789999999999999999999999999999999999
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEE
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~ 2115 (2342)
+|...|.+++++ +.+|++|+.|+++++||..... ..+..
T Consensus 187 ~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~---------------------------------------~~~~~ 225 (420)
T 4gga_A 187 SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE---------------------------------------HHVAT 225 (420)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS---------------------------------------CEEEE
T ss_pred CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc---------------------------------------eeeEE
Confidence 999999999885 7899999999999999987631 23456
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe----EEEEEecCC--cEEEEEecCCc-EEEE--EeCCCeEEE
Q 000085 2116 LRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR----LIRRLVGVD--AHAVSLSSEGV-IMTW--NKLQHTLSS 2186 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk----lIrsL~gh~--vssLSfSpDG~-IlVw--dssdGsI~I 2186 (2342)
+.+|...+.++.|++++.++++++.||.|++||..+++ .+.....|. +..++|+|++. +++. +..++.|++
T Consensus 226 ~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i 305 (420)
T 4gga_A 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 305 (420)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE
T ss_pred ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEE
Confidence 78999999999999999999999999999999998775 234454443 78889998765 4433 246899999
Q ss_pred EEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe
Q 000085 2187 FTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2187 ~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
|++......... .+...+.++.|++++..+++++ |. .|+.
T Consensus 306 wd~~t~~~~~~~-~~~~~v~~~~~~~~~~~lv~~s--g~-------------------------------------~d~~ 345 (420)
T 4gga_A 306 WNVCSGACLSAV-DAHSQVCSILWSPHYKELISGH--GF-------------------------------------AQNQ 345 (420)
T ss_dssp EETTTTEEEEEE-ECSSCEEEEEEETTTTEEEEEE--CT-------------------------------------TTCC
T ss_pred EeCCccccceee-ccccceeeeeecCCCCeEEEEE--ec-------------------------------------CCCE
Confidence 999754433322 2567899999999999999875 11 2788
Q ss_pred EEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2267 ICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2267 IrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|+|||+.+++++.++. +|...|++++|+|||++|+||+.||+|+||++...
T Consensus 346 I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 346 LVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred EEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999 99999999999999999999999999999996543
No 57
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.95 E-value=5.6e-26 Score=277.29 Aligned_cols=258 Identities=12% Similarity=0.085 Sum_probs=212.7
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc------
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA------ 2028 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg------ 2028 (2342)
+++..+++++.|+++++|+..++.. ...+..+. ..+.+++|+|+|.+|++|+.|+.+++|++...
T Consensus 74 ~d~~~l~s~s~Dg~v~vWd~~~~~~------~~~~~~~~---~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~ 144 (354)
T 2pbi_B 74 KDKRRIVSSSQDGKVIVWDSFTTNK------EHAVTMPC---TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA 144 (354)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCE------EEEEECSS---SCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCc------ceEEecCC---CCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc
Confidence 3567899999999999999765321 12223333 34567999999999999999999999998643
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccC--CCCCceeecCCCc-c
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI--GSSTPANASADKS-R 2105 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp--DG~~Las~s~D~s-~ 2105 (2342)
.....+.+|.+.|.+++|+|++..|+||+.|++|++||+.++.....+ ..|...+.++.+++ ++..+++++.|+. .
T Consensus 145 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~ 223 (354)
T 2pbi_B 145 AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223 (354)
T ss_dssp GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence 345667889999999999999999999999999999999987665544 45667778887776 5678888888875 4
Q ss_pred cccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC----CcEEEEEecCCcEEEEEe
Q 000085 2106 RRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV----DAHAVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2106 ~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh----~vssLSfSpDG~IlVwds 2179 (2342)
.|+. ..++..+.+|...|++++|+|++.++++|+.||+|++||+++++.+..+..+ .+..++|+++|.+++.+.
T Consensus 224 ~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred EEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE
Confidence 5765 4567888999999999999999999999999999999999999888777654 367899999999999999
Q ss_pred CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2180 LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2180 sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
.++.|++|++..........+|...|++++|+|||++|++|+.
T Consensus 304 ~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 304 NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred CCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 9999999998533333344569999999999999999999973
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=3.6e-26 Score=280.39 Aligned_cols=295 Identities=12% Similarity=0.079 Sum_probs=233.6
Q ss_pred eeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc
Q 000085 1952 FLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL 2031 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll 2031 (2342)
+..+++..+++++.|+.+++|+..++. . ......+...+.+++|+|++++|++|+.|++|++||+.+++.+
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~------~---~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 174 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNL------Q---REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 174 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCE------E---EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcc------e---eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc
Confidence 345678899999999999999865421 1 1111233445677999999999999999999999999999999
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc--cCCCCCCccccccCCCCCceeecCCCcccccc
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT--IEPSSGMGTPGNSIGSSTPANASADKSRRRRI 2109 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~--~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i 2109 (2342)
..+.+|.+.|++++|+|++++|++|+.|++|++||+.++.....+. ..+...+..+.+.+++...
T Consensus 175 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------------- 241 (420)
T 3vl1_A 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ------------- 241 (420)
T ss_dssp EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS-------------
T ss_pred eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce-------------
Confidence 9999999999999999999999999999999999999876655542 2344455555554433221
Q ss_pred CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec-C--CcEEEEEecCCc-EEEEEeCCCeEE
Q 000085 2110 EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG-V--DAHAVSLSSEGV-IMTWNKLQHTLS 2185 (2342)
Q Consensus 2110 ~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g-h--~vssLSfSpDG~-IlVwdssdGsI~ 2185 (2342)
....|...+++++|+|++.++++|+.||.|++||+++++.+..+.. | .+..++|+|+|. +++.+..+|.|+
T Consensus 242 -----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~ 316 (420)
T 3vl1_A 242 -----LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLA 316 (420)
T ss_dssp -----CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred -----eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEE
Confidence 2244678899999999999999999999999999999998888754 3 378999999999 999999999999
Q ss_pred EEEeCCc-e-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCC
Q 000085 2186 SFTLNGV-L-VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2186 I~dlnG~-~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
+|++... . +......|...|+++.+ ++++++++|+.
T Consensus 317 vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~----------------------------------------- 354 (420)
T 3vl1_A 317 QWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGF----------------------------------------- 354 (420)
T ss_dssp EEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETT-----------------------------------------
T ss_pred EEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecC-----------------------------------------
Confidence 9999742 2 33333337788888855 57889998862
Q ss_pred CCeEEEEECCCC---------eEEEEEecCCCCCeEEEEEecCCC---EEEEEeCCCcEEEEeCC
Q 000085 2264 SPSICFLDLHTL---------KVFHVLKLGEGQDITALALNKDNT---NLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2264 DGsIrIWDL~Tg---------k~L~tL~lgHs~~ItsLafSPDG~---~LaSGSsDGsIrVWDi~ 2316 (2342)
|+.|++||+... .....+. +|...|.+++|+|++. .|++++.+|.+.+|++.
T Consensus 355 d~~v~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 355 DTSIKLDIISDPESERPAIEFETPTFLV-SNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp TEEEEEEEECCTTCCSCEECTTSCEEEC-CSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred CccEEEEeccCCCCCccceeccCccEEc-cCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 677899987662 1112233 7888999999999999 89999999999999964
No 59
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.95 E-value=5.4e-26 Score=303.07 Aligned_cols=259 Identities=13% Similarity=0.101 Sum_probs=215.1
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++|..+++++.++.|++|+..++. ....+..|. ..+.+++|+|++++|++|+.||.|+|||+.+++.+..+
T Consensus 23 p~~~~la~~~~~g~v~iwd~~~~~------~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 93 (814)
T 3mkq_A 23 PTEPWVLTTLYSGRVEIWNYETQV------EVRSIQVTE---TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (814)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTE------EEEEEECCS---SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEECCCCc------eEEEEecCC---CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 356778889999999999966521 122333343 34667999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccC-CCCCceeecCCCc-ccccc--C
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI-GSSTPANASADKS-RRRRI--E 2110 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp-DG~~Las~s~D~s-~~~~i--~ 2110 (2342)
.+|.+.|++++|+|++.+|++|+.||+|++||+.++.........+...+.++.|+| ++..++++..++. ..|+. .
T Consensus 94 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~ 173 (814)
T 3mkq_A 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (814)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS
T ss_pred ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999999999999999999999999886444444556778899999999 8888888888765 45665 3
Q ss_pred CceEEecCC-CCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEE
Q 000085 2111 GPIHVLRGH-HREILCCCVSS--DLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2111 ~~l~~L~GH-s~~Vt~VafSP--Dg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
.....+..| ...|.+++|+| ++.++++|+.||.|++||+++++.+..+.+|. +..++|+|+|.+++.+..+|.++
T Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~ 253 (814)
T 3mkq_A 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253 (814)
T ss_dssp SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Confidence 445555554 48999999999 99999999999999999999999999998764 78899999999999999999999
Q ss_pred EEEeCCceeeeecCCCCCCeEEEEEccCCC--EEEEEeC
Q 000085 2186 SFTLNGVLVARAKLPLSGSIGCMEISLDGH--SALIGVN 2222 (2342)
Q Consensus 2186 I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk--~LaSGS~ 2222 (2342)
+|++...........|...|.+++|+|+|. ++++|+.
T Consensus 254 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 292 (814)
T 3mkq_A 254 IWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292 (814)
T ss_dssp EEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEET
T ss_pred EEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeC
Confidence 999985444444455888999999999997 5666653
No 60
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.6e-26 Score=272.40 Aligned_cols=243 Identities=14% Similarity=0.153 Sum_probs=192.9
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCc--ccceec-cc-CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGA--KTLETA-SG-HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tg--kll~tL-~G-Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
.+.+++|+++ +|++|+.|++|++||+.++ +....+ .+ |.+.|++++|+|++++|++|+.|++|+|||+......
T Consensus 16 ~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~ 93 (330)
T 2hes_X 16 KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR 93 (330)
T ss_dssp CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC------
T ss_pred ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc
Confidence 4566899987 9999999999999999875 344555 44 9999999999999999999999999999998652100
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR-- 2151 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT-- 2151 (2342)
. .....+..+.+|...|++++|+|++++|++|+.|++|++||++.
T Consensus 94 ~---------------------------------~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~ 140 (330)
T 2hes_X 94 T---------------------------------FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG 140 (330)
T ss_dssp ----------------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC
T ss_pred c---------------------------------ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC
Confidence 0 00124567889999999999999999999999999999999943
Q ss_pred --CeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCc--eeeeecCCCCCCeEEEEEccC--CCEEEEEeCC
Q 000085 2152 --GRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGV--LVARAKLPLSGSIGCMEISLD--GHSALIGVNS 2223 (2342)
Q Consensus 2152 --GklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~--~L~s~~~~Hs~~ItsLafSPD--Gk~LaSGS~D 2223 (2342)
.+++..+.+|. +..++|+|++.+++.+..++.|++|+.... .......+|...|.+++|+|+ +.++++|+.
T Consensus 141 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~- 219 (330)
T 2hes_X 141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD- 219 (330)
T ss_dssp CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence 35677888775 789999999999999999999999998643 233344569999999999998 778998873
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC--------eEEEEEecCCCCCeEEEEEe
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL--------KVFHVLKLGEGQDITALALN 2295 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg--------k~L~tL~lgHs~~ItsLafS 2295 (2342)
|++|++||+.++ .+...+...|...|++++|+
T Consensus 220 ----------------------------------------D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 259 (330)
T 2hes_X 220 ----------------------------------------DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG 259 (330)
T ss_dssp ----------------------------------------TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC
T ss_pred ----------------------------------------CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc
Confidence 677999988654 44555553489999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCC
Q 000085 2296 KDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2296 PDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
+++ +|++|+.||.|++|+...
T Consensus 260 ~~~-~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 260 FNG-LIASVGADGVLAVYEEVD 280 (330)
T ss_dssp TTS-CEEEEETTSCEEEEEEET
T ss_pred CCC-EEEEEeCCCEEEEEEcCC
Confidence 766 799999999999999643
No 61
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.95 E-value=2.5e-26 Score=294.51 Aligned_cols=306 Identities=13% Similarity=0.136 Sum_probs=245.9
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCc----ccceecccCCCC-eEEEEecC--CCCEEEEEeCCCceEEEeccCC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGA----KTLETASGHCAP-VTCLALSS--DSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tg----kll~tL~GHt~~-VtcLAfSP--DG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
.+.+++|+|+|++|++|+ ++.|+|||+.++ +....+.+|.+. |++++|+| ++++|++|+.||+|++||+.++
T Consensus 20 ~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~ 98 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 98 (615)
T ss_dssp CCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCC
Confidence 345699999999999998 899999999999 889999999999 99999999 9999999999999999999754
Q ss_pred ------c-cccccccCCCCCCccccccCCCCCceeecCC-----CccccccCCceEEecCCCCCeEEEEEecCCC-EEEE
Q 000085 2071 ------F-TSRTGTIEPSSGMGTPGNSIGSSTPANASAD-----KSRRRRIEGPIHVLRGHHREILCCCVSSDLG-VVVS 2137 (2342)
Q Consensus 2071 ------~-~i~t~~~~~~~~V~svs~SpDG~~Las~s~D-----~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~-lLaS 2137 (2342)
. ........+...+.+++++|++..++++..+ .+..|+....+..+.+|...|++++|+|++. .+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 178 (615)
T 1pgu_A 99 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 178 (615)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred cccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEE
Confidence 1 1111234567889999999999999888876 3466888888999999999999999999998 8999
Q ss_pred EeCCCcEEEEECCCCeEEEEEecC-----CcEEEEEecC-CcEEEEEeCCCeEEEEEeC-CceeeeecC---CCCCCeEE
Q 000085 2138 CSDSSDLLLHSIRRGRLIRRLVGV-----DAHAVSLSSE-GVIMTWNKLQHTLSSFTLN-GVLVARAKL---PLSGSIGC 2207 (2342)
Q Consensus 2138 GS~DGtIrIWDLrTGklIrsL~gh-----~vssLSfSpD-G~IlVwdssdGsI~I~dln-G~~L~s~~~---~Hs~~Its 2207 (2342)
++.||.|++||+.+++.+..+.+| .+..++|+|+ |.+++.+..++.+++|++. +..+..... .|...|.+
T Consensus 179 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 179 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 258 (615)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred EeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEE
Confidence 999999999999999999999876 3678999999 9999999999999999986 444444324 69999999
Q ss_pred EEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc-ccccc----cc-----ccccCCCCccCCCCeEEEEECCCCeE
Q 000085 2208 MEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT-EDFDL----AS-----DQSVDNNRFDFPSPSICFLDLHTLKV 2277 (2342)
Q Consensus 2208 LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~-iaFsp----d~-----~~s~ss~~ias~DGsIrIWDL~Tgk~ 2277 (2342)
++|+ ++.++++++.++. .++|++....... ..... .. .........+..|+.|++||+.+++.
T Consensus 259 ~~~~-~~~~l~~~~~d~~------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 259 LSWL-DSQKFATVGADAT------IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV 331 (615)
T ss_dssp EEES-SSSEEEEEETTSE------EEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE
T ss_pred EEEc-CCCEEEEEcCCCc------EEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE
Confidence 9999 9999999998776 4556655432100 00000 00 00111122233699999999999999
Q ss_pred EEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2278 FHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+..+. +|...|++++| |+ |++++.||.|++|+..
T Consensus 332 ~~~~~-~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 332 LKTIS-GHNKGITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEEC-CCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred EEEEe-CCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence 88888 88888988888 77 7777777777777743
No 62
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=2.9e-26 Score=281.42 Aligned_cols=275 Identities=15% Similarity=0.164 Sum_probs=210.3
Q ss_pred eeEEEEEcCCCCEEEEEEcCC-------cEEEEecCCcccc----------eecccCCCCeEEEEecCCCCEEEEE----
Q 000085 1998 SSAVVSITHDKEIITGGHVDG-------SIKLLTSDGAKTL----------ETASGHCAPVTCLALSSDSNFLVTG---- 2056 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DG-------sIrVWDl~tgkll----------~tL~GHt~~VtcLAfSPDG~~LaSG---- 2056 (2342)
.+.+++|+|||++|++|+.|. .|++|++..+... ..+.+|.+.|+|++++ +..+++|
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~ 93 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNEN 93 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCC
Confidence 366799999999999997543 5999998765321 2467899999998875 5566665
Q ss_pred -------eCCCceEEEeccCCcccccc--------ccCCCCCCccccccCCCCCceeec--CCC-ccccccCC--ceEEe
Q 000085 2057 -------SQDTTILLWRIHRAFTSRTG--------TIEPSSGMGTPGNSIGSSTPANAS--ADK-SRRRRIEG--PIHVL 2116 (2342)
Q Consensus 2057 -------S~DGTVrVWDl~tg~~i~t~--------~~~~~~~V~svs~SpDG~~Las~s--~D~-s~~~~i~~--~l~~L 2116 (2342)
+.|+++++|++......... .......+..++|+|||+.+++++ .|+ ++.|+... ++..+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence 45788999998765322111 122334467899999999986544 455 35577643 34444
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe--cCC--cEEEEEecCCcEEEEEeCCC----eEEEEE
Q 000085 2117 RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV--GVD--AHAVSLSSEGVIMTWNKLQH----TLSSFT 2188 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~--gh~--vssLSfSpDG~IlVwdssdG----sI~I~d 2188 (2342)
.|...|++++|+|||+++++++.| .+++|+..++..+.... .|. +..++|+|||..++....++ .+..|+
T Consensus 174 -~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 174 -ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp -ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred -CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 478899999999999999999855 56777777777665432 343 68899999999998887665 577787
Q ss_pred eCCcee----eeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCC
Q 000085 2189 LNGVLV----ARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPS 2264 (2342)
Q Consensus 2189 lnG~~L----~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~D 2264 (2342)
+..... ......|...|++++|+|||++|++|+. |
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~-----------------------------------------D 290 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN-----------------------------------------D 290 (365)
T ss_dssp EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET-----------------------------------------T
T ss_pred cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC-----------------------------------------C
Confidence 753322 1223348899999999999999999973 6
Q ss_pred CeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2265 PSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2265 GsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
++|+|||+.+++++..+..+|...|++|+|||||++|++|+.|++|+||+++.
T Consensus 291 ~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 291 NSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 77999999999999988669999999999999999999999999999999864
No 63
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=9e-27 Score=279.26 Aligned_cols=240 Identities=12% Similarity=0.081 Sum_probs=196.2
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc--cceecccCCCCeEEEEecC--CCCEEEEEeCCCceEEEeccCCcc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK--TLETASGHCAPVTCLALSS--DSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk--ll~tL~GHt~~VtcLAfSP--DG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
..+.+++|+|+|++|++|+.|++|+|||+.+++ .+..+.+|.+.|++++|++ ++++|+|||.|++|++||+.++..
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~ 93 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW 93 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence 345679999999999999999999999998764 4678899999999999986 489999999999999999876421
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIWDLr 2150 (2342)
.....+.+|...|++++|+|+ +.++++|+.||+|++||++
T Consensus 94 --------------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~ 135 (316)
T 3bg1_A 94 --------------------------------------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYT 135 (316)
T ss_dssp --------------------------------------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEEC
T ss_pred --------------------------------------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecC
Confidence 123456789999999999998 7899999999999999998
Q ss_pred CCeE---EEEEecCC--cEEEEEecC-----------------CcEEEEEeCCCeEEEEEeCCc---eeeeecCCCCCCe
Q 000085 2151 RGRL---IRRLVGVD--AHAVSLSSE-----------------GVIMTWNKLQHTLSSFTLNGV---LVARAKLPLSGSI 2205 (2342)
Q Consensus 2151 TGkl---IrsL~gh~--vssLSfSpD-----------------G~IlVwdssdGsI~I~dlnG~---~L~s~~~~Hs~~I 2205 (2342)
++.. ...+.+|. +..++|+|+ +.+++.+..++.|++|++... ........|...|
T Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V 215 (316)
T 3bg1_A 136 GEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWV 215 (316)
T ss_dssp SSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCE
T ss_pred CCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCce
Confidence 7632 23333443 677889887 467888889999999999642 2333344599999
Q ss_pred EEEEEccCC----CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC---e-E
Q 000085 2206 GCMEISLDG----HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL---K-V 2277 (2342)
Q Consensus 2206 tsLafSPDG----k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg---k-~ 2277 (2342)
.+++|+|++ .+|++|+. |++|+|||+.+. + .
T Consensus 216 ~~v~~sp~~~~~~~~las~s~-----------------------------------------D~~v~iw~~~~~~~~~~~ 254 (316)
T 3bg1_A 216 RDVAWAPSIGLPTSTIASCSQ-----------------------------------------DGRVFIWTCDDASSNTWS 254 (316)
T ss_dssp EEEECCCCSSCSCCEEEEEET-----------------------------------------TCEEEEEECSSTTCCCCB
T ss_pred EEEEecCCCCCCCceEEEEcC-----------------------------------------CCeEEEEEccCccccchh
Confidence 999999987 88998873 788999998762 1 1
Q ss_pred EEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2278 FHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
...+. .|...|.+++|+|++++|++|+.||.|++|+..
T Consensus 255 ~~~~~-~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 255 PKLLH-KFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCEEE-ECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred hhhhh-cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 12333 688899999999999999999999999999954
No 64
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-25 Score=273.63 Aligned_cols=275 Identities=14% Similarity=0.087 Sum_probs=226.9
Q ss_pred ceeEEEEEcCCCC-EEEEEEcCCcEEEEec----CCcc------cceeccc----------CCCCeEEEEecCCCCEEEE
Q 000085 1997 RSSAVVSITHDKE-IITGGHVDGSIKLLTS----DGAK------TLETASG----------HCAPVTCLALSSDSNFLVT 2055 (2342)
Q Consensus 1997 ~Svt~VafSpDGk-lLASGS~DGsIrVWDl----~tgk------ll~tL~G----------Ht~~VtcLAfSPDG~~LaS 2055 (2342)
..+.+++|+|+|+ +|++|+.||.|++|++ .+++ ....+.. |.+.|++++|+|++++|++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 3456799999999 9999999999999999 8887 3444433 6889999999999999999
Q ss_pred EeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCC----------
Q 000085 2056 GSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHRE---------- 2122 (2342)
Q Consensus 2056 GS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~---------- 2122 (2342)
|+.||+|++||. ++..... ...+...+.++.++|++..++++..++. ..|+. ...+..+..|...
T Consensus 126 ~~~dg~i~i~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 126 GVENGELRLWNK-TGALLNV-LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHS 203 (425)
T ss_dssp EETTSCEEEEET-TSCEEEE-ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------------
T ss_pred EeCCCeEEEEeC-CCCeeee-ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecccc
Confidence 999999999993 3333332 3467788999999999999988887765 44655 4456677777766
Q ss_pred -----eEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceee
Q 000085 2123 -----ILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA 2195 (2342)
Q Consensus 2123 -----Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~ 2195 (2342)
+.+++|++++ .+++++.||.|++||+++++.+..+..|. +..++++++|.+++.+..++.+++|++......
T Consensus 204 ~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 282 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ 282 (425)
T ss_dssp --CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS
T ss_pred CCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc
Confidence 9999999875 58899999999999999999888887764 788999999999999999999999998754444
Q ss_pred eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2196 RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2196 s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
.....|...|.+++|+|++ ++++++. |+.|++||+.++
T Consensus 283 ~~~~~~~~~i~~~~~~~~~-~l~~~~~-----------------------------------------d~~i~i~d~~~~ 320 (425)
T 1r5m_A 283 NCFYGHSQSIVSASWVGDD-KVISCSM-----------------------------------------DGSVRLWSLKQN 320 (425)
T ss_dssp EEECCCSSCEEEEEEETTT-EEEEEET-----------------------------------------TSEEEEEETTTT
T ss_pred eEecCCCccEEEEEECCCC-EEEEEeC-----------------------------------------CCcEEEEECCCC
Confidence 4445589999999999999 8887762 678999999999
Q ss_pred eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2276 KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2276 k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
+.+..+. .|...|++++|+|++++|++++.||.|++|+...
T Consensus 321 ~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 321 TLLALSI-VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp EEEEEEE-CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred cEeEecc-cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 9999988 8899999999999999999999999999999643
No 65
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=6.5e-26 Score=279.93 Aligned_cols=274 Identities=14% Similarity=0.119 Sum_probs=218.1
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc-----------cceecccCC------------CCeEEEEecCCC--C
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK-----------TLETASGHC------------APVTCLALSSDS--N 2051 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk-----------ll~tL~GHt------------~~VtcLAfSPDG--~ 2051 (2342)
..+.+++|+|+|++|++|+.||.|+|||+.+++ ....+.+|. +.|++++|+|++ .
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence 457789999999999999999999999999876 477889998 889999999998 8
Q ss_pred EEEEEeCCCceEEEeccCCcccc---------------------------------------ccccCCCCCCccccccCC
Q 000085 2052 FLVTGSQDTTILLWRIHRAFTSR---------------------------------------TGTIEPSSGMGTPGNSIG 2092 (2342)
Q Consensus 2052 ~LaSGS~DGTVrVWDl~tg~~i~---------------------------------------t~~~~~~~~V~svs~SpD 2092 (2342)
+|++|+.|++|++||+.++.... .....|...+.+++++|+
T Consensus 109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 188 (447)
T 3dw8_B 109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD 188 (447)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence 99999999999999998643210 113467888999999999
Q ss_pred CCCceeecCCC-ccccccCCc---eE-------EecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeE----EE
Q 000085 2093 SSTPANASADK-SRRRRIEGP---IH-------VLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRGRL----IR 2156 (2342)
Q Consensus 2093 G~~Las~s~D~-s~~~~i~~~---l~-------~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTGkl----Ir 2156 (2342)
+..++++ .|+ +..|+.... .. .+.+|...|++++|+|++ .++++|+.||+|++||+++++. +.
T Consensus 189 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 267 (447)
T 3dw8_B 189 YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSK 267 (447)
T ss_dssp SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCE
T ss_pred CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceee
Confidence 9999988 454 456776522 22 356899999999999998 9999999999999999999887 77
Q ss_pred EEecC--------------CcEEEEEecCCcEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCC---------------eE
Q 000085 2157 RLVGV--------------DAHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGS---------------IG 2206 (2342)
Q Consensus 2157 sL~gh--------------~vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~---------------It 2206 (2342)
.+..| .+..++|+|+|.+++.+.. +.+++|++.. .........|... +.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 346 (447)
T 3dw8_B 268 LFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKF 346 (447)
T ss_dssp EECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCC
T ss_pred EeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccce
Confidence 78775 5789999999999999888 9999999963 2222222234321 33
Q ss_pred EEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEe----
Q 000085 2207 CMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLK---- 2282 (2342)
Q Consensus 2207 sLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~---- 2282 (2342)
.++|+|+|++|++|+. ||.|++||+.+++.+....
T Consensus 347 ~~~~s~~~~~l~s~s~-----------------------------------------dg~v~iwd~~~~~~~~~~~~~~~ 385 (447)
T 3dw8_B 347 ECCWNGSDSVVMTGSY-----------------------------------------NNFFRMFDRNTKRDITLEASREN 385 (447)
T ss_dssp CEEECTTSSEEEEECS-----------------------------------------TTEEEEEETTTCCEEEEECCSTT
T ss_pred EEEECCCCCEEEEecc-----------------------------------------CCEEEEEEcCCCcceeeeecccc
Confidence 4999999999998863 6778888888877653211
Q ss_pred ---------------------------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2283 ---------------------------LGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2283 ---------------------------lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
..+...|.+++|+|++.+|++++.++ +++|.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 386 NKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp CCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred cccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 12345789999999999999988876 77776
No 66
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.94 E-value=3.4e-25 Score=267.91 Aligned_cols=235 Identities=17% Similarity=0.175 Sum_probs=193.4
Q ss_pred eeEEEEE-----cC-CCCEEEEEEcCCcEEEEecCCc-------ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEE
Q 000085 1998 SSAVVSI-----TH-DKEIITGGHVDGSIKLLTSDGA-------KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILL 2064 (2342)
Q Consensus 1998 Svt~Vaf-----Sp-DGklLASGS~DGsIrVWDl~tg-------kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrV 2064 (2342)
.|.+++| ++ ++++|++|+.|++|+|||+.++ .....+.+|...|++++|+|++.+|+||+.|++|++
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~l 102 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRL 102 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEE
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence 4566888 66 8999999999999999998753 345678999999999999999999999999999999
Q ss_pred EeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 000085 2065 WRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDL 2144 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtI 2144 (2342)
||+.++. .+..+.+|...|++++|+|+++++++|+.||+|
T Consensus 103 wd~~~~~----------------------------------------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i 142 (343)
T 2xzm_R 103 WDLRTGT----------------------------------------TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREI 142 (343)
T ss_dssp EETTSSC----------------------------------------EEEEEECCCSCEEEEEECSSTTEEEEEETTSCE
T ss_pred EECCCCc----------------------------------------EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEE
Confidence 9998742 345678999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEe---cC--CcEEEEEecCC----------cEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEE
Q 000085 2145 LLHSIRRGRLIRRLV---GV--DAHAVSLSSEG----------VIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCME 2209 (2342)
Q Consensus 2145 rIWDLrTGklIrsL~---gh--~vssLSfSpDG----------~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLa 2209 (2342)
++||+... ...... .| .+..++++|++ .+++.+..++.|++|+..+.... ....|...|++++
T Consensus 143 ~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~ 220 (343)
T 2xzm_R 143 KLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRY-TFKAHESNVNHLS 220 (343)
T ss_dssp EEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEE-EEECCSSCEEEEE
T ss_pred EEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeE-EEcCccccceEEE
Confidence 99999844 333332 23 37889999987 68888999999999996654333 3345999999999
Q ss_pred EccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC-CCeEEEEEecCCCCC
Q 000085 2210 ISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH-TLKVFHVLKLGEGQD 2288 (2342)
Q Consensus 2210 fSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~-Tgk~L~tL~lgHs~~ 2288 (2342)
|+|+|++|++|+. |+.|++||+. .......+. +...
T Consensus 221 ~s~~g~~l~sgs~-----------------------------------------dg~v~iwd~~~~~~~~~~~~--~~~~ 257 (343)
T 2xzm_R 221 ISPNGKYIATGGK-----------------------------------------DKKLLIWDILNLTYPQREFD--AGST 257 (343)
T ss_dssp ECTTSSEEEEEET-----------------------------------------TCEEEEEESSCCSSCSEEEE--CSSC
T ss_pred ECCCCCEEEEEcC-----------------------------------------CCeEEEEECCCCcccceeec--CCCc
Confidence 9999999999973 7889999994 444444444 4567
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2289 ITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2289 ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|++++|+|++.+|+ ++.|+.|++|+....
T Consensus 258 v~~v~~sp~~~~la-~~~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 258 INQIAFNPKLQWVA-VGTDQGVKIFNLMTQ 286 (343)
T ss_dssp EEEEEECSSSCEEE-EEESSCEEEEESSSC
T ss_pred EEEEEECCCCCEEE-EECCCCEEEEEeCCC
Confidence 99999999998776 556888999997543
No 67
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.94 E-value=5.1e-25 Score=266.66 Aligned_cols=277 Identities=13% Similarity=0.151 Sum_probs=218.1
Q ss_pred CcceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCcccceecc-------------cCCCCeEEEEecC-CCCEEEEEeCC
Q 000085 1995 GIRSSAVVSITH-DKEIITGGHVDGSIKLLTSDGAKTLETAS-------------GHCAPVTCLALSS-DSNFLVTGSQD 2059 (2342)
Q Consensus 1995 gI~Svt~VafSp-DGklLASGS~DGsIrVWDl~tgkll~tL~-------------GHt~~VtcLAfSP-DG~~LaSGS~D 2059 (2342)
+...+.+++|+| ++++|++|+.||.|++||+.+++....+. +|...|++++|+| ++.+|++|+.|
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 334567799999 99999999999999999999887665543 6999999999999 78899999999
Q ss_pred CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC---CCEEE
Q 000085 2060 TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD---LGVVV 2136 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD---g~lLa 2136 (2342)
++|++||+.++.. ...+ .+...+.+++|++. +.+++
T Consensus 122 ~~i~iwd~~~~~~----------------------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~ 160 (408)
T 4a11_B 122 KTLKVWDTNTLQT----------------------------------------ADVF-NFEETVYSHHMSPVSTKHCLVA 160 (408)
T ss_dssp SEEEEEETTTTEE----------------------------------------EEEE-ECSSCEEEEEECSSCSSCCEEE
T ss_pred CeEEEeeCCCCcc----------------------------------------ceec-cCCCceeeeEeecCCCCCcEEE
Confidence 9999999987532 1122 36678899999884 55999
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCc-EEEEEeCCCeEEEEEeCCce--eeee--------------
Q 000085 2137 SCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVL--VARA-------------- 2197 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~--L~s~-------------- 2197 (2342)
+|+.||.|++||+++++.+..+..|. +..++++|++. +++.+..++.+++|++.... +...
T Consensus 161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
T 4a11_B 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240 (408)
T ss_dssp EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence 99999999999999999999998764 78999999998 68888999999999985321 1111
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccc------ccc------cccCCCCccCCCC
Q 000085 2198 KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDL------ASD------QSVDNNRFDFPSP 2265 (2342)
Q Consensus 2198 ~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFsp------d~~------~s~ss~~ias~DG 2265 (2342)
...|...|++++|+|+|+++++|+.++. ..+|++............ ... ...........|+
T Consensus 241 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
T 4a11_B 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNR------MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS 314 (408)
T ss_dssp SCSCSSCEEEEEECTTSSEEEEEETTSC------EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT
T ss_pred cccccCceeEEEEcCCCCEEEEecCCCe------EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC
Confidence 1348899999999999999999998877 456766554321111000 000 0011111223589
Q ss_pred eEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2266 SICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2266 sIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
.|++||+.+++++..+. +|...|++++|+|++++|++|+.||.|++|+.....
T Consensus 315 ~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 315 TIAVYTVYSGEQITMLK-GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp EEEEEETTTCCEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred EEEEEECcCCcceeeec-cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 99999999999999998 999999999999999999999999999999976553
No 68
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.94 E-value=1.5e-25 Score=264.11 Aligned_cols=277 Identities=13% Similarity=0.149 Sum_probs=232.7
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
.+.+++|+|||++++++..++.+.+|............+|.+.|++++|+|++++|++++ ||+|++||+.++.......
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~ 89 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS 89 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeee
Confidence 355699999999999888888777776655444444558999999999999999999999 9999999998865443331
Q ss_pred ----cCCCCCCccccccCCCCCceeecCCCc-cccccCC----ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000085 2078 ----IEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG----PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2078 ----~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~----~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWD 2148 (2342)
..+...+.++.++|+++.++++..++. ..|+... ....+.+|...|++++|+|+++++++++.||.|++||
T Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d 169 (337)
T 1gxr_A 90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169 (337)
T ss_dssp EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 257788999999999999988887764 5566543 4567788999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2149 IRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2149 LrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
+++++.+..+..|. +..++++|+|..++.+..++.+++|++........ ..|...+.+++|+|+|+++++|+.
T Consensus 170 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~---- 244 (337)
T 1gxr_A 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGME---- 244 (337)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEECTTSSEEEEEET----
T ss_pred CCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee-ecCCCceEEEEECCCCCEEEEEcC----
Confidence 99999999998764 78899999999999999999999999975433322 237889999999999999998863
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs 2306 (2342)
|+.|++||+.+++.. .+. .|...|++++|+|++++|++++.
T Consensus 245 -------------------------------------~~~i~~~~~~~~~~~-~~~-~~~~~v~~~~~~~~~~~l~~~~~ 285 (337)
T 1gxr_A 245 -------------------------------------SSNVEVLHVNKPDKY-QLH-LHESCVLSLKFAYCGKWFVSTGK 285 (337)
T ss_dssp -------------------------------------TSCEEEEETTSSCEE-EEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred -------------------------------------CCcEEEEECCCCCeE-EEc-CCccceeEEEECCCCCEEEEecC
Confidence 567999999998764 455 79999999999999999999999
Q ss_pred CCcEEEEeCCCCC
Q 000085 2307 DKQLIVFTDPALS 2319 (2342)
Q Consensus 2307 DGsIrVWDi~sLs 2319 (2342)
||.|++|+.....
T Consensus 286 dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 286 DNLLNAWRTPYGA 298 (337)
T ss_dssp TSEEEEEETTTCC
T ss_pred CCcEEEEECCCCe
Confidence 9999999976653
No 69
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.6e-26 Score=281.53 Aligned_cols=278 Identities=13% Similarity=0.132 Sum_probs=210.8
Q ss_pred CcceeEEEEEcC-CCCEEEEEEcCCcEEEEecCC---cccce-ec-ccCCCCeEEEEecCCCCEEEEEeCCCceEEEecc
Q 000085 1995 GIRSSAVVSITH-DKEIITGGHVDGSIKLLTSDG---AKTLE-TA-SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 1995 gI~Svt~VafSp-DGklLASGS~DGsIrVWDl~t---gkll~-tL-~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
+...+.+++|+| ++++|++|+.||+|+|||+.+ +.... .+ .+|.+.|++++|+|++++|++|+.||+|++||+.
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~ 141 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVN 141 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEec
Confidence 334567799999 999999999999999999877 43221 22 2599999999999999999999999999999995
Q ss_pred ---CCcccccc--------c-cC--CCCCCcccc--ccCCCCCceeecCCCc-ccccc--CCceEEecC--CCCCeEEEE
Q 000085 2069 ---RAFTSRTG--------T-IE--PSSGMGTPG--NSIGSSTPANASADKS-RRRRI--EGPIHVLRG--HHREILCCC 2127 (2342)
Q Consensus 2069 ---tg~~i~t~--------~-~~--~~~~V~svs--~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~G--Hs~~Vt~Va 2127 (2342)
.+...... . .. +...+.++. +++++..++++..++. ..|+. ...+..+.+ |...|++++
T Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~ 221 (437)
T 3gre_A 142 HYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSIC 221 (437)
T ss_dssp EEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEE
T ss_pred cccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEE
Confidence 33222211 0 01 333444444 5578888988888765 45665 456778888 899999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCC--cEEEEE----ecCCcEEEEEeCCCeEEEEEeCCceeeeecCC
Q 000085 2128 VSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV-GVD--AHAVSL----SSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP 2200 (2342)
Q Consensus 2128 fSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~-gh~--vssLSf----SpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~ 2200 (2342)
|+|++.++++|+.||+|++||+++++++..+. .|. +..+++ +++|.+++.+..++.|++|++...........
T Consensus 222 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 301 (437)
T 3gre_A 222 IDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFIN 301 (437)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEES
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEc
Confidence 99999999999999999999999999999886 443 667744 45788999999999999999974332222211
Q ss_pred --------------------------CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccc
Q 000085 2201 --------------------------LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQS 2254 (2342)
Q Consensus 2201 --------------------------Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s 2254 (2342)
|...|++++|+ ++++|++|+.
T Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~-------------------------------- 348 (437)
T 3gre_A 302 SDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA-------------------------------- 348 (437)
T ss_dssp SSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG--------------------------------
T ss_pred CCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC--------------------------------
Confidence 55668888888 7778888764
Q ss_pred cCCCCccCCCCeEEEEECCCCeEEEEEec------------------------------------CCCCCeEEEEEecC-
Q 000085 2255 VDNNRFDFPSPSICFLDLHTLKVFHVLKL------------------------------------GEGQDITALALNKD- 2297 (2342)
Q Consensus 2255 ~ss~~ias~DGsIrIWDL~Tgk~L~tL~l------------------------------------gHs~~ItsLafSPD- 2297 (2342)
|+.|++||+.+++.+..+.. .|...|++++|+++
T Consensus 349 ---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~ 419 (437)
T 3gre_A 349 ---------TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVD 419 (437)
T ss_dssp ---------GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESS
T ss_pred ---------CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccC
Confidence 45555555555544444431 38999999999998
Q ss_pred -CCEEEEEeCCCcEEEEe
Q 000085 2298 -NTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2298 -G~~LaSGSsDGsIrVWD 2314 (2342)
+.+|++|+.||.|+||+
T Consensus 420 ~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 420 ETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSEEEEEEETTSCEEEEC
T ss_pred CceEEEEEcCCceEEEeC
Confidence 78999999999999995
No 70
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.9e-25 Score=266.14 Aligned_cols=241 Identities=12% Similarity=0.076 Sum_probs=202.1
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecC--CcccceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCcc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSD--GAKTLETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~--tgkll~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
..+.+++|+|++++|++|+.||.|+|||+. +++.+..+.+|.+.|++++|+++ +++|++|+.||+|++||+.++..
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 91 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 91 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce
Confidence 346679999999999999999999999998 66778889999999999999987 99999999999999999987421
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIWDLr 2150 (2342)
.....+.+|...|++++|+|+ +.++++++.||.|++||++
T Consensus 92 --------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 133 (379)
T 3jrp_A 92 --------------------------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133 (379)
T ss_dssp --------------------------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred --------------------------------------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence 134556789999999999999 9999999999999999999
Q ss_pred CCe--EEEEEecCC--cEEEEEec-------------CCcEEEEEeCCCeEEEEEeCCc----eeeeecCCCCCCeEEEE
Q 000085 2151 RGR--LIRRLVGVD--AHAVSLSS-------------EGVIMTWNKLQHTLSSFTLNGV----LVARAKLPLSGSIGCME 2209 (2342)
Q Consensus 2151 TGk--lIrsL~gh~--vssLSfSp-------------DG~IlVwdssdGsI~I~dlnG~----~L~s~~~~Hs~~ItsLa 2209 (2342)
++. ....+..|. +..++|+| ++..++.+..++.|++|++... .+......|...|++++
T Consensus 134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~ 213 (379)
T 3jrp_A 134 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 213 (379)
T ss_dssp TTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred CCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEE
Confidence 873 334455553 78999999 6999999999999999998632 12233445999999999
Q ss_pred EccC---CCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe---EEEEEe-
Q 000085 2210 ISLD---GHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK---VFHVLK- 2282 (2342)
Q Consensus 2210 fSPD---Gk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk---~L~tL~- 2282 (2342)
|+|+ +.++++|+. ||.|++||+.++. ....+.
T Consensus 214 ~sp~~~~~~~l~s~~~-----------------------------------------dg~i~iwd~~~~~~~~~~~~~~~ 252 (379)
T 3jrp_A 214 WSPTVLLRSYLASVSQ-----------------------------------------DRTCIIWTQDNEQGPWKKTLLKE 252 (379)
T ss_dssp ECCCCSSSEEEEEEET-----------------------------------------TSCEEEEEESSTTSCCEEEESSS
T ss_pred ECCCCCCCCeEEEEeC-----------------------------------------CCEEEEEeCCCCCccceeeeecc
Confidence 9999 899998873 6779999998863 112221
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2283 LGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2283 lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
..|...|++++|+|++++|++++.||.|++|+..
T Consensus 253 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 253 EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 1478899999999999999999999999999965
No 71
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.94 E-value=2.3e-25 Score=272.47 Aligned_cols=260 Identities=14% Similarity=0.105 Sum_probs=196.3
Q ss_pred cCCCeEEecCC------CceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc
Q 000085 1955 QHGKASASPAS------GTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA 2028 (2342)
Q Consensus 1955 ~~Gk~LaSsSs------D~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg 2028 (2342)
++|+.+++++. |+.+++|+..++.... .+......|. ..+.+++|+|++++++ ++.||+|+|||+.++
T Consensus 52 pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~--~~~~~~~~~~---~~V~~~~~s~d~~~l~-~s~dg~v~lWd~~~~ 125 (357)
T 4g56_B 52 RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE--SLCTAGVQTE---AGVTDVAWVSEKGILV-ASDSGAVELWEILEK 125 (357)
T ss_dssp SSSCEEEEEECSSSSSCCEEEEEESSCC---CG--GGCSEEEECS---SCEEEEEEETTTEEEE-EETTSCEEEC-----
T ss_pred CCCCEEEEEcCCCCccccCeEEEEECCCCCcce--eEecccCCCC---CCEEEEEEcCCCCEEE-EECCCEEEEeecccc
Confidence 57888888887 6678889866532211 1111122233 3467799999987664 678999999999987
Q ss_pred ccce----ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCC-CceeecCCC
Q 000085 2029 KTLE----TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS-TPANASADK 2103 (2342)
Q Consensus 2029 kll~----tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~-~Las~s~D~ 2103 (2342)
+... ...+|.+.|++++|+|++++|++|+.|++|++||+.++.....+ ..+...+.++++++++. .++++..|+
T Consensus 126 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg 204 (357)
T 4g56_B 126 ESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDG 204 (357)
T ss_dssp ---CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTS
T ss_pred ceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCC
Confidence 6543 34589999999999999999999999999999999987655544 45778899999999886 556777765
Q ss_pred c-cccccC--CceE--EecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCC-cE
Q 000085 2104 S-RRRRIE--GPIH--VLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEG-VI 2174 (2342)
Q Consensus 2104 s-~~~~i~--~~l~--~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG-~I 2174 (2342)
. ..|+.. ++.. .+..|...+++++|+|+ +.++++|+.|+.|++||+++++.++.+.+|. +..++|+|+| .+
T Consensus 205 ~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~ 284 (357)
T 4g56_B 205 RILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPF 284 (357)
T ss_dssp CEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCC
T ss_pred ceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCE
Confidence 4 557653 3333 33457788999999997 5688999999999999999999999998764 7899999998 57
Q ss_pred EEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEcc-CCCEEEEEeC
Q 000085 2175 MTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISL-DGHSALIGVN 2222 (2342)
Q Consensus 2175 lVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP-DGk~LaSGS~ 2222 (2342)
++.+..++.|++|++....+... ..|.+.|++++|+| |+.+|++|+.
T Consensus 285 lasgs~D~~i~iwd~~~~~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 285 LASISEDCTVAVLDADFSEVFRD-LSHRDFVTGVAWSPLDHSKFTTVGW 332 (357)
T ss_dssp EEEEETTSCEEEECTTSCEEEEE-CCCSSCEEEEEECSSSTTEEEEEET
T ss_pred EEEEeCCCEEEEEECCCCcEeEE-CCCCCCEEEEEEeCCCCCEEEEEcC
Confidence 78888999999999985554433 46999999999998 8999999973
No 72
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.94 E-value=1.9e-24 Score=256.03 Aligned_cols=261 Identities=21% Similarity=0.199 Sum_probs=208.3
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
++.+++++.|++|++|+........ ......+..|. ..+.+++|+|+|++|++|+.|+.|++|+...+........
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~~~~-~~~~~~l~~h~---~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~ 126 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDETNY-GIPQRALRGHS---HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVG 126 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSSSCS-EEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCCccc-ceeeEEEeCCC---CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecC
Confidence 5678999999999999966522111 11112233333 4566799999999999999999999999999888888888
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCC--CceeecCCCc-ccccc--CC
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS--TPANASADKS-RRRRI--EG 2111 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~--~Las~s~D~s-~~~~i--~~ 2111 (2342)
|...+.++.+++++.+|++|+.|+.+++||+............+...+..+.+++++. .+++++.++. ..|+. ..
T Consensus 127 ~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~ 206 (340)
T 4aow_A 127 HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 206 (340)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE
T ss_pred CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc
Confidence 9999999999999999999999999999999875544444556677788888887764 3456666654 44555 35
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
....+.+|.+.|++++|+|++++|++|+.||+|++||+++++.+..+..+. +..+++++++.+++. ..++.|++|++.
T Consensus 207 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~iwd~~ 285 (340)
T 4aow_A 207 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA-ATGPSIKIWDLE 285 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEE-EETTEEEEEETT
T ss_pred eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeec-cCCCEEEEEECC
Confidence 677889999999999999999999999999999999999999999988764 788999999887654 468999999987
Q ss_pred Cceeeee---------cCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2191 GVLVARA---------KLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2191 G~~L~s~---------~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
+...... ...|...|++++|+|||++|++|+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 326 (340)
T 4aow_A 286 GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT 326 (340)
T ss_dssp TTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET
T ss_pred CCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC
Confidence 6443221 1238899999999999999999973
No 73
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.94 E-value=1.2e-24 Score=257.84 Aligned_cols=257 Identities=14% Similarity=0.192 Sum_probs=212.9
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++|+.+++++.|+.+++|+..++. +...+..|.. .+.+++|+|++++|++|+.|+.|++||+.+++.+..+
T Consensus 33 ~~~~~l~s~~~dg~i~iw~~~~~~------~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 103 (312)
T 4ery_A 33 PNGEWLASSSADKLIKIWGAYDGK------FEKTISGHKL---GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCC------EEEEECCCSS---CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEeeCCCeEEEEeCCCcc------cchhhccCCC---ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 456788999999999999865521 2223333443 4566999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccccC--C
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE--G 2111 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~--~ 2111 (2342)
.+|...|.+++|+|++++|++|+.|++|++||+.++...... ..+...+..+.+++++..++++..++. ..|+.. .
T Consensus 104 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 182 (312)
T 4ery_A 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182 (312)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 999999999999999999999999999999999987654443 456678899999999999999888875 456653 3
Q ss_pred ceEEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc----EEEEE-ecCCcEEEEEeCCCeEE
Q 000085 2112 PIHVL-RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDA----HAVSL-SSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2112 ~l~~L-~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~v----ssLSf-SpDG~IlVwdssdGsI~ 2185 (2342)
.+..+ ..|...+.+++|+|+++++++++.||.|++||+++++.+..+.+|.. ....+ .+++.+++.+..++.|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~ 262 (312)
T 4ery_A 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262 (312)
T ss_dssp EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEE
T ss_pred eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEE
Confidence 33433 45677899999999999999999999999999999999999987642 22333 46788899999999999
Q ss_pred EEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2186 SFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2186 I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+|++....+......|...|.+++|+|++.++++++
T Consensus 263 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEECCCchhhhhhhccCCcEEEEeecCcCCceEEEE
Confidence 999986665555667999999999999999999886
No 74
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=4.4e-25 Score=271.65 Aligned_cols=271 Identities=13% Similarity=0.132 Sum_probs=217.1
Q ss_pred EEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCc-------ccc
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH-DKEIITGGHVDGSIKLLTSDGA-------KTL 2031 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp-DGklLASGS~DGsIrVWDl~tg-------kll 2031 (2342)
+++++.|+.|++|+....... ......+..| ...+.+++|+| ++++|++|+.||+|+|||+.++ +.+
T Consensus 50 ~~~~~~~g~i~v~~~~~~~~~--~~~~~~~~~h---~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~ 124 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTGRV--DKNVPLVCGH---TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV 124 (402)
T ss_dssp EBCCSSSCCEEEEETTCCEEC--CTTCCCBCCC---SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCS
T ss_pred EEEEcCCCEEEEEECccCCCC--CCCCceEecC---CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCce
Confidence 345788899999986431110 0111122333 34567799999 8999999999999999999987 567
Q ss_pred eecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2032 ETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
..+.+|...|++++|+|++ ++|++|+.|++|++||+.++.
T Consensus 125 ~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~--------------------------------------- 165 (402)
T 2aq5_A 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA--------------------------------------- 165 (402)
T ss_dssp EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE---------------------------------------
T ss_pred EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC---------------------------------------
Confidence 8899999999999999998 699999999999999998752
Q ss_pred CceEEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE-ecCC---cEEEEEecCCcEEEEE---eCC
Q 000085 2111 GPIHVL--RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL-VGVD---AHAVSLSSEGVIMTWN---KLQ 2181 (2342)
Q Consensus 2111 ~~l~~L--~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL-~gh~---vssLSfSpDG~IlVwd---ssd 2181 (2342)
.+..+ .+|...|++++|+|++.++++++.||.|++||+++++.+..+ ..|. +..++|+++|.+++.+ ..+
T Consensus 166 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d 244 (402)
T 2aq5_A 166 -AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSE 244 (402)
T ss_dssp -EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCC
T ss_pred -ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCC
Confidence 23445 679999999999999999999999999999999999999998 5654 6789999999999988 688
Q ss_pred CeEEEEEeCCc--eeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCC
Q 000085 2182 HTLSSFTLNGV--LVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2182 GsI~I~dlnG~--~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ 2259 (2342)
+.+++|++... .+......|...|.+++|+|+|+++++++.
T Consensus 245 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~------------------------------------- 287 (402)
T 2aq5_A 245 RQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGK------------------------------------- 287 (402)
T ss_dssp EEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEET-------------------------------------
T ss_pred ceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEc-------------------------------------
Confidence 99999998642 233334457889999999999999975541
Q ss_pred ccCCCCeEEEEECCCCeE-EEEEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2260 FDFPSPSICFLDLHTLKV-FHVLK-LGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2260 ias~DGsIrIWDL~Tgk~-L~tL~-lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
.|+.|++||+.+++. +..+. ..|...|++++|+|++.++++ .|+.+++|+...
T Consensus 288 ---~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 288 ---GDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp ---TCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred ---CCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence 267899999998873 33333 125689999999999987764 577999999654
No 75
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=3.6e-25 Score=295.08 Aligned_cols=277 Identities=11% Similarity=0.063 Sum_probs=240.8
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
.+.+++|+|+|++|++|+.||.|+|||+.+++.+..+.+|.+.|++++|+|++++|++|+.||+|+|||+.++......
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~- 93 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF- 93 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-
Confidence 3566999999999999999999999999999999999999999999999999999999999999999999987665544
Q ss_pred cCCCCCCccccccCCCCCceeecCCCc-cccccC---CceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE---GPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~---~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
..+...+.+++|+|++..+++++.++. ..|+.. .....+.+|...|++++|+| ++..+++++.||+|++||+.++
T Consensus 94 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~ 173 (814)
T 3mkq_A 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (814)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS
T ss_pred ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 457788999999999999999888765 456653 44678889999999999999 8899999999999999999988
Q ss_pred eEEEEEecC---CcEEEEEec--CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2153 RLIRRLVGV---DAHAVSLSS--EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2153 klIrsL~gh---~vssLSfSp--DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
.....+..+ .+..++++| +|.+++.+..++.+++|++...........|...|++++|+|+|.++++|+.
T Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----- 248 (814)
T 3mkq_A 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE----- 248 (814)
T ss_dssp SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET-----
T ss_pred cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-----
Confidence 877777653 478899999 9999999999999999998755555445568999999999999999999873
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCE-EEEEeC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTN-LLVSTA 2306 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~-LaSGSs 2306 (2342)
||.|++||+.+++.+..+. .|...|++++|+|++.. +++++.
T Consensus 249 ------------------------------------dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 249 ------------------------------------DGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp ------------------------------------TSCEEEEETTTCSEEEEEC-CSSSSEEEEEECTTCGGGEEEEEE
T ss_pred ------------------------------------CCeEEEEECCCCcEEEEee-cCCCcEEEEEEccCCCceEEEEEe
Confidence 6779999999999999998 88889999999999974 355556
Q ss_pred CCcEEEEeCCC
Q 000085 2307 DKQLIVFTDPA 2317 (2342)
Q Consensus 2307 DGsIrVWDi~s 2317 (2342)
|+.+.+|+...
T Consensus 292 ~~~~~~~~~~~ 302 (814)
T 3mkq_A 292 DNGFTVLSLGN 302 (814)
T ss_dssp TTEEEEEECSC
T ss_pred CCCEEEEEcCC
Confidence 77788888543
No 76
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.94 E-value=2.1e-24 Score=269.49 Aligned_cols=265 Identities=17% Similarity=0.163 Sum_probs=226.2
Q ss_pred cCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCC
Q 000085 2005 THDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGM 2084 (2342)
Q Consensus 2005 SpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V 2084 (2342)
.+++++|++|+.||+|++||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|++||+.++.....+ ..+...+
T Consensus 129 ~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~-~~h~~~v 206 (464)
T 3v7d_B 129 QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTV 206 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEE-CCCSSCE
T ss_pred EECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEE-CCCCCcc
Confidence 3467899999999999999999999999999999999999999988 9999999999999999987655443 4577888
Q ss_pred cccccc--CCCCCceeecCCCc-cccccCC-------------------------ceEEecCCCCCeEEEEEecCCCEEE
Q 000085 2085 GTPGNS--IGSSTPANASADKS-RRRRIEG-------------------------PIHVLRGHHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2085 ~svs~S--pDG~~Las~s~D~s-~~~~i~~-------------------------~l~~L~GHs~~Vt~VafSPDg~lLa 2136 (2342)
.++.++ +++..+++++.++. ..|+... ....+.+|...|.++ ++++.+++
T Consensus 207 ~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~ 284 (464)
T 3v7d_B 207 RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVV 284 (464)
T ss_dssp EEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEE
T ss_pred EEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEE
Confidence 888887 57788888888765 4465432 155778899999887 57799999
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCC
Q 000085 2137 SCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDG 2214 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDG 2214 (2342)
+|+.||+|++||+++++.+..+.+|. +..++++++|..++.+..++.|++|++...........|...|.++.|+ +
T Consensus 285 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~ 362 (464)
T 3v7d_B 285 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--D 362 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--S
T ss_pred EEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--C
Confidence 99999999999999999999998775 7889999999999999999999999997544444555699999999997 6
Q ss_pred CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEE
Q 000085 2215 HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALAL 2294 (2342)
Q Consensus 2215 k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLaf 2294 (2342)
.++++|+. ||.|++||+.++....... |...+..++|
T Consensus 363 ~~l~s~s~-----------------------------------------dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~ 399 (464)
T 3v7d_B 363 KFLVSAAA-----------------------------------------DGSIRGWDANDYSRKFSYH--HTNLSAITTF 399 (464)
T ss_dssp SEEEEEET-----------------------------------------TSEEEEEETTTCCEEEEEE--CTTCCCEEEE
T ss_pred CEEEEEeC-----------------------------------------CCcEEEEECCCCceeeeec--CCCCccEEEE
Confidence 89998872 7889999999988776665 6778889999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2295 NKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2295 SPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
++++.+|++|+ ||.|++||..+..
T Consensus 400 ~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 400 YVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp EECSSEEEEEE-TTEEEEEETTTCC
T ss_pred EeCCCEEEEec-CCeEEEEECCCCc
Confidence 99999999998 9999999976653
No 77
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.4e-25 Score=304.61 Aligned_cols=342 Identities=7% Similarity=0.030 Sum_probs=241.6
Q ss_pred eeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc
Q 000085 1952 FLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL 2031 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll 2031 (2342)
+.|..|+.+++++.|++|++|+..++... ..+. +. ..+.+++|+|++++|++|+.||+|++||+.++++.
T Consensus 64 l~fspg~~L~S~s~D~~v~lWd~~~~~~~------~~~~-~~---~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 64 MRFVKGIYLVVINAKDTVYVLSLYSQKVL------TTVF-VP---GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp EEEETTTEEEEEETTCEEEEEETTTCSEE------EEEE-CS---SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEcCCCEEEEEECcCeEEEEECCCCcEE------EEEc-CC---CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 44555888999999999999997653211 1111 22 34678999999999999999999999999987653
Q ss_pred -----------eecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCcccccccc-----------------CCCC
Q 000085 2032 -----------ETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGTI-----------------EPSS 2082 (2342)
Q Consensus 2032 -----------~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~~-----------------~~~~ 2082 (2342)
..+.+|.+.|++++|+|+ +..|++|+.|++| +||+.++.....+.. .+..
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence 345789999999999996 5789999999999 999998765544321 1235
Q ss_pred CCccccccCCCCCceeecCCCc-cccccC--CceEE--e---cC-------------CCCCeEEEEEec----CC-CEEE
Q 000085 2083 GMGTPGNSIGSSTPANASADKS-RRRRIE--GPIHV--L---RG-------------HHREILCCCVSS----DL-GVVV 2136 (2342)
Q Consensus 2083 ~V~svs~SpDG~~Las~s~D~s-~~~~i~--~~l~~--L---~G-------------Hs~~Vt~VafSP----Dg-~lLa 2136 (2342)
.+.+++|+|+|..+++++.|+. ..|+.. +++.. + .+ |...|++++|++ ++ .+++
T Consensus 213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~ 292 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI 292 (902)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence 6899999999999999998875 557763 23221 2 12 345789999953 32 3555
Q ss_pred EEeCC-----CcEEEEE---------------------------------------------------------------
Q 000085 2137 SCSDS-----SDLLLHS--------------------------------------------------------------- 2148 (2342)
Q Consensus 2137 SGS~D-----GtIrIWD--------------------------------------------------------------- 2148 (2342)
+|+.| +.+.+|+
T Consensus 293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~ 372 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG 372 (902)
T ss_dssp EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET
T ss_pred eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC
Confidence 66443 1444444
Q ss_pred --------CCCCeEEEE-----------------------------------------EecCC--cEEEEEecCCcEEEE
Q 000085 2149 --------IRRGRLIRR-----------------------------------------LVGVD--AHAVSLSSEGVIMTW 2177 (2342)
Q Consensus 2149 --------LrTGklIrs-----------------------------------------L~gh~--vssLSfSpDG~IlVw 2177 (2342)
+.+|..... +.+|. +..++|+|||.+++.
T Consensus 373 dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS 452 (902)
T 2oaj_A 373 NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT 452 (902)
T ss_dssp TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE
T ss_pred CCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE
Confidence 333321111 00000 122455788999999
Q ss_pred EeCCCeEEEEEeCCceeee-----e-c-----CCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC------
Q 000085 2178 NKLQHTLSSFTLNGVLVAR-----A-K-----LPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK------ 2240 (2342)
Q Consensus 2178 dssdGsI~I~dlnG~~L~s-----~-~-----~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~------ 2240 (2342)
+..|++|++|++.+..+.. . . ..|...|++++|+|||++|++|+.|+. .++|++...
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt------V~lwd~~~~~~~~~~ 526 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD------VVLFKYEVNQFYSVE 526 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC------EEEEEEEECCC----
T ss_pred ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE------EEEEEecCccccCcc
Confidence 9999999999987533211 0 0 158899999999999999999998887 345554322
Q ss_pred --------------------------------------------------CCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2241 --------------------------------------------------QSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2241 --------------------------------------------------~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
....++|++++ . ...+..|++|++|
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~----lAsgs~D~tv~lw 601 (902)
T 2oaj_A 527 NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-F----VGIAYAAGSLMLI 601 (902)
T ss_dssp -----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-E----EEEEETTSEEEEE
T ss_pred ccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-E----EEEEeCCCcEEEE
Confidence 11223444443 2 1223469999999
Q ss_pred ECCCCeEEEEEe-----cCCCCCeEEEEEe-----cCC---CEEEEEeCCCcEEEEeC
Q 000085 2271 DLHTLKVFHVLK-----LGEGQDITALALN-----KDN---TNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2271 DL~Tgk~L~tL~-----lgHs~~ItsLafS-----PDG---~~LaSGSsDGsIrVWDi 2315 (2342)
|+.+...+.... .+|...|++|+|+ ||| ++|++|+.||+|++|++
T Consensus 602 d~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 602 DRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp ETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred ECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 999888765322 1788999999999 886 89999999999999996
No 78
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.93 E-value=9.7e-25 Score=272.10 Aligned_cols=263 Identities=19% Similarity=0.263 Sum_probs=219.7
Q ss_pred EEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCC
Q 000085 2003 SITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSS 2082 (2342)
Q Consensus 2003 afSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~ 2082 (2342)
++++++++|++|+.||+|++||+.+++.+..+.+|.+.|+|++| ++++|++|+.||+|++||+.++...... ..+..
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~ 214 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL-IHHCE 214 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE-CCCCS
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEE-cCCCC
Confidence 34558999999999999999999999999999999999999999 7899999999999999999988765544 45667
Q ss_pred CCccccccCCCCCceeecCCCc-cccccCC--ce---EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2083 GMGTPGNSIGSSTPANASADKS-RRRRIEG--PI---HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2083 ~V~svs~SpDG~~Las~s~D~s-~~~~i~~--~l---~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
.+.++.++ +..+++++.++. ..|+... .. ..+.+|...|++++| +++++++|+.||+|++||+++++.+.
T Consensus 215 ~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~ 290 (435)
T 1p22_A 215 AVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR 290 (435)
T ss_dssp CEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred cEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEE
Confidence 78888876 457777777765 4566532 22 678899999999999 78899999999999999999999999
Q ss_pred EEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccc
Q 000085 2157 RLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQG 2236 (2342)
Q Consensus 2157 sL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~ 2236 (2342)
.+.+|.....++..++..++.+..++.|++|++...........|...|.+++| ++.++++|+.
T Consensus 291 ~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~-------------- 354 (435)
T 1p22_A 291 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY-------------- 354 (435)
T ss_dssp EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEET--------------
T ss_pred EEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeC--------------
Confidence 999887555555557889999999999999999744444444569999999999 7899999973
Q ss_pred cCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe---------EEEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2237 LNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK---------VFHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2237 l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk---------~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
||.|++||+.+++ ++..+. +|...|++++| ++.+|++|+.|
T Consensus 355 ---------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~D 404 (435)
T 1p22_A 355 ---------------------------DGKIKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQF--DEFQIVSSSHD 404 (435)
T ss_dssp ---------------------------TSCEEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEEE--CSSCEEECCSS
T ss_pred ---------------------------CCcEEEEECCCCCCccccccchheeecc-CCCCCeEEEEe--CCCEEEEEeCC
Confidence 6779999987765 788888 89999999999 78889999999
Q ss_pred CcEEEEeCCCC
Q 000085 2308 KQLIVFTDPAL 2318 (2342)
Q Consensus 2308 GsIrVWDi~sL 2318 (2342)
|.|++||+.+.
T Consensus 405 g~i~iwd~~~~ 415 (435)
T 1p22_A 405 DTILIWDFLND 415 (435)
T ss_dssp SEEEEEC----
T ss_pred CEEEEEECCCC
Confidence 99999996544
No 79
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.93 E-value=1.3e-24 Score=263.98 Aligned_cols=246 Identities=15% Similarity=0.094 Sum_probs=205.3
Q ss_pred cceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc------cceecccCCCCeEEEEecCC----C---CEEEEEeCCCce
Q 000085 1996 IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK------TLETASGHCAPVTCLALSSD----S---NFLVTGSQDTTI 2062 (2342)
Q Consensus 1996 I~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk------ll~tL~GHt~~VtcLAfSPD----G---~~LaSGS~DGTV 2062 (2342)
...+.+++|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|++++|+|+ + ++|++|+.|++|
T Consensus 16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 34566799998 899999999999999999988 78888999999999999999 9 999999999999
Q ss_pred EEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCC-----CCCeEEEEEe----cCCC
Q 000085 2063 LLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH-----HREILCCCVS----SDLG 2133 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH-----s~~Vt~VafS----PDg~ 2133 (2342)
++||+.++.... ......+.+| ...|++++|+ |++.
T Consensus 94 ~iw~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 138 (397)
T 1sq9_A 94 LFYRITREDETK-----------------------------------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS 138 (397)
T ss_dssp EEEEEEECTTTC-----------------------------------CEEEEEECCSCTTGGGSCEEEEEEECCC----C
T ss_pred EEEEccCCcccc-----------------------------------cccceeecccccccCCCcEEEEEEeeccCCCCc
Confidence 999998753200 0114456677 5899999999 9999
Q ss_pred E-EEEEeCCCcEEEEECCC------CeEEE-----EEec-------C--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCc
Q 000085 2134 V-VVSCSDSSDLLLHSIRR------GRLIR-----RLVG-------V--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV 2192 (2342)
Q Consensus 2134 l-LaSGS~DGtIrIWDLrT------GklIr-----sL~g-------h--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~ 2192 (2342)
+ +++|+.||.|++||+++ ++.+. .+.+ | .+..++|+++| +++.+..++.+++|++...
T Consensus 139 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 139 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC
Confidence 9 99999999999999998 66655 6642 3 47899999999 9999999999999999754
Q ss_pred eeeeecCC---C---CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe
Q 000085 2193 LVARAKLP---L---SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2193 ~L~s~~~~---H---s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
........ | ...|.+++|+|++++|++|+.++. .+.
T Consensus 218 ~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~--------------------------------------~g~ 259 (397)
T 1sq9_A 218 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS--------------------------------------FGC 259 (397)
T ss_dssp EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT--------------------------------------EEE
T ss_pred ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCC--------------------------------------Cce
Confidence 44444444 7 899999999999999999873211 178
Q ss_pred EEEEECCCCeEEEEEecC-------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2267 ICFLDLHTLKVFHVLKLG-------------EGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2267 IrIWDL~Tgk~L~tL~lg-------------Hs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|++||+.+++.+..+. + |...|++++|+|++++|++|+.||.|++||....
T Consensus 260 i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 260 ITLYETEFGERIGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp EEEEETTTCCEEEEEC-BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred EEEEECCCCcccceec-cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999998 6 9999999999999999999999999999997654
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.93 E-value=2.6e-24 Score=284.78 Aligned_cols=238 Identities=20% Similarity=0.245 Sum_probs=201.0
Q ss_pred ceeEEEEEcCCC-CEEEEEEcCCcEEEEecCCc-----ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 1997 RSSAVVSITHDK-EIITGGHVDGSIKLLTSDGA-----KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1997 ~Svt~VafSpDG-klLASGS~DGsIrVWDl~tg-----kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
..|.+++|++++ ++|++|+.|++|+||++.+. .....+.+|.+.|++++|+|++++|+||+.|++|+|||+.++
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~ 462 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG 462 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 345679999875 69999999999999998764 335678999999999999999999999999999999999874
Q ss_pred ccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2071 FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2071 ~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
. ....+.+|...|++++|+|++++++||+.|++|++||+.
T Consensus 463 ~----------------------------------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 463 V----------------------------------------STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp E----------------------------------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred c----------------------------------------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence 2 244578999999999999999999999999999999986
Q ss_pred CCeEEEEEe---cCC--cEEEEEecCC--cEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2151 RGRLIRRLV---GVD--AHAVSLSSEG--VIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2151 TGklIrsL~---gh~--vssLSfSpDG--~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
......... +|. +.+++|++++ ..++.+..++.|++|++....+......|.+.|++++|+|+|+++++|+.
T Consensus 503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~- 581 (694)
T 3dm0_A 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK- 581 (694)
T ss_dssp SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC-
Confidence 654433322 233 7899999987 57888899999999999876666666679999999999999999999973
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEE
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaS 2303 (2342)
||.|++||+.+++.+..+. +...|.+++|+|++.+|++
T Consensus 582 ----------------------------------------Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~ 619 (694)
T 3dm0_A 582 ----------------------------------------DGVVLLWDLAEGKKLYSLE--ANSVIHALCFSPNRYWLCA 619 (694)
T ss_dssp ----------------------------------------TSBCEEEETTTTEEEECCB--CSSCEEEEEECSSSSEEEE
T ss_pred ----------------------------------------CCeEEEEECCCCceEEEec--CCCcEEEEEEcCCCcEEEE
Confidence 6789999999999887766 5568999999999987776
Q ss_pred EeCCCcEEEEeCCCC
Q 000085 2304 STADKQLIVFTDPAL 2318 (2342)
Q Consensus 2304 GSsDGsIrVWDi~sL 2318 (2342)
++ |+.|+|||....
T Consensus 620 ~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 620 AT-EHGIKIWDLESK 633 (694)
T ss_dssp EE-TTEEEEEETTTT
T ss_pred Ec-CCCEEEEECCCC
Confidence 65 566999997654
No 81
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.93 E-value=2.9e-24 Score=255.19 Aligned_cols=269 Identities=13% Similarity=0.039 Sum_probs=220.4
Q ss_pred cceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc---cceecccCCCCeEEEEecCCCC-EEEEEeCCCceEEEec-cCC
Q 000085 1996 IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK---TLETASGHCAPVTCLALSSDSN-FLVTGSQDTTILLWRI-HRA 2070 (2342)
Q Consensus 1996 I~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk---ll~tL~GHt~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl-~tg 2070 (2342)
...+.+++|+|++++|++|+.||.|+||++.+++ ....+.+|...|++++|+|+++ +|++|+.||+|++||+ .++
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 90 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence 3456779999999999999999999999998876 3455668999999999999999 9999999999999999 776
Q ss_pred ccccccccC--CCCCCccccccCCCCCceeecCCCc-cccccC-----------CceEEecCCCCCeEEEEEecCCCEEE
Q 000085 2071 FTSRTGTIE--PSSGMGTPGNSIGSSTPANASADKS-RRRRIE-----------GPIHVLRGHHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2071 ~~i~t~~~~--~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~-----------~~l~~L~GHs~~Vt~VafSPDg~lLa 2136 (2342)
.. ..... +...+.++.+++ +..++++..++. ..|+.. .++..+. |...|++++|++++ ++
T Consensus 91 ~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~ 164 (342)
T 1yfq_A 91 SF--QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LI 164 (342)
T ss_dssp SE--EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EE
T ss_pred ce--EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EE
Confidence 43 22344 788899999999 888888888765 445542 3344454 88999999999887 99
Q ss_pred EEeCCCcEEEEECCC-CeE--EEEEecC--CcEEEEEec-CCcEEEEEeCCCeEEEEEeCCc------eeeeecCCCC--
Q 000085 2137 SCSDSSDLLLHSIRR-GRL--IRRLVGV--DAHAVSLSS-EGVIMTWNKLQHTLSSFTLNGV------LVARAKLPLS-- 2202 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrT-Gkl--IrsL~gh--~vssLSfSp-DG~IlVwdssdGsI~I~dlnG~------~L~s~~~~Hs-- 2202 (2342)
+++.||.|++||+++ +.. ......+ .+..++++| +|..++.+..+|.+++|+++.. ........|.
T Consensus 165 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 244 (342)
T 1yfq_A 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244 (342)
T ss_dssp EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccc
Confidence 999999999999998 543 2223222 478999999 9999999999999999998643 2222222354
Q ss_pred -------CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2203 -------GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2203 -------~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
..|++++|+|+|++|++|+. ||.|++||+.++
T Consensus 245 ~~~~~~~~~i~~~~~s~~~~~l~~~~~-----------------------------------------dg~i~vwd~~~~ 283 (342)
T 1yfq_A 245 LKDTNLAYPVNSIEFSPRHKFLYTAGS-----------------------------------------DGIISCWNLQTR 283 (342)
T ss_dssp TTCCSSCCCEEEEEECTTTCCEEEEET-----------------------------------------TSCEEEEETTTT
T ss_pred ccccccceeEEEEEEcCCCCEEEEecC-----------------------------------------CceEEEEcCccH
Confidence 49999999999999999873 677999999999
Q ss_pred eEEEEEecCC-CCCeEEEEEecCCCEEEEEeCCCc-EEEEe
Q 000085 2276 KVFHVLKLGE-GQDITALALNKDNTNLLVSTADKQ-LIVFT 2314 (2342)
Q Consensus 2276 k~L~tL~lgH-s~~ItsLafSPDG~~LaSGSsDGs-IrVWD 2314 (2342)
+.+..+. +| ...|++++ |++++|++|+.||. .+.|.
T Consensus 284 ~~~~~~~-~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 284 KKIKNFA-KFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEECC-CCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred hHhhhhh-cccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 9999988 66 99999999 99999999999998 54444
No 82
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.93 E-value=3.7e-24 Score=256.89 Aligned_cols=260 Identities=13% Similarity=0.044 Sum_probs=211.3
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce--
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE-- 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~-- 2032 (2342)
++|+.+++++.|+.+++|+..++. +.....+..|. ..+.+++|+|++++|++|+.||.|++||+.+++...
T Consensus 18 ~~~~~l~~~~~d~~v~i~~~~~~~----~~~~~~~~~h~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 90 (372)
T 1k8k_C 18 KDRTQIAICPNNHEVHIYEKSGNK----WVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 90 (372)
T ss_dssp TTSSEEEEECSSSEEEEEEEETTE----EEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCc----EEeeeeecCCC---CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeE
Confidence 567888999999999999865521 11222333333 456679999999999999999999999998886543
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc---ccccccCCCCCCccccccCCCCCceeecCCCc-cccc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT---SRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRR 2108 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~---i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~ 2108 (2342)
.+.+|...|++++|+|++++|++|+.|++|++||+..... .......+...+.++.++|++..++++..++. ..|+
T Consensus 91 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d 170 (372)
T 1k8k_C 91 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 170 (372)
T ss_dssp ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEE
Confidence 3477999999999999999999999999999999998653 22224556788999999999999998887764 4566
Q ss_pred c--------------------CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEE
Q 000085 2109 I--------------------EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAV 2166 (2342)
Q Consensus 2109 i--------------------~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssL 2166 (2342)
. ...+..+.+|...|++++|+|++.++++++.||.|++||+++++.+..+..|. +..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~ 250 (372)
T 1k8k_C 171 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV 250 (372)
T ss_dssp CCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE
T ss_pred cccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEE
Confidence 3 45677888999999999999999999999999999999999999999998874 7899
Q ss_pred EEecCCcEEEEEeCCCeEEEEEeCC--cee---------------------------------------eeecCCCCCCe
Q 000085 2167 SLSSEGVIMTWNKLQHTLSSFTLNG--VLV---------------------------------------ARAKLPLSGSI 2205 (2342)
Q Consensus 2167 SfSpDG~IlVwdssdGsI~I~dlnG--~~L---------------------------------------~s~~~~Hs~~I 2205 (2342)
+|+++|.+++.+ .++.+++|++.. ... ......|...|
T Consensus 251 ~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 329 (372)
T 1k8k_C 251 TFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV 329 (372)
T ss_dssp EEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCE
T ss_pred EEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCc
Confidence 999999988877 889999999865 210 11123599999
Q ss_pred EEEEEc-cCC---CEEEEEeC
Q 000085 2206 GCMEIS-LDG---HSALIGVN 2222 (2342)
Q Consensus 2206 tsLafS-PDG---k~LaSGS~ 2222 (2342)
++++|+ ++| .+|++|+.
T Consensus 330 ~~~~~~~~~g~~~~~l~s~~~ 350 (372)
T 1k8k_C 330 SQISVLSGGKAKCSQFCTTGM 350 (372)
T ss_dssp EEEEEEESTTTSCSEEEEEET
T ss_pred ceeEEecCCCcceeeEEEecC
Confidence 999966 677 99999973
No 83
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=1.9e-24 Score=257.86 Aligned_cols=242 Identities=14% Similarity=0.112 Sum_probs=200.9
Q ss_pred cCcceeEEEEEcCC----CCEEEEEEcCCcEEEEecCCcccceeccc-----CCCCeEEEEecCC----CCEEEEEeCCC
Q 000085 1994 SGIRSSAVVSITHD----KEIITGGHVDGSIKLLTSDGAKTLETASG-----HCAPVTCLALSSD----SNFLVTGSQDT 2060 (2342)
Q Consensus 1994 ~gI~Svt~VafSpD----GklLASGS~DGsIrVWDl~tgkll~tL~G-----Ht~~VtcLAfSPD----G~~LaSGS~DG 2060 (2342)
++...+.+++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|++++|+|+ +.+|++|+.||
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 34456777999984 34666666678999999998887776654 5578999999999 67999999999
Q ss_pred ceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEe
Q 000085 2061 TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCS 2139 (2342)
Q Consensus 2061 TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS 2139 (2342)
+|++||+.++ ..+..+.+|...|++++|+| ++.++++|+
T Consensus 96 ~i~v~d~~~~----------------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~ 135 (366)
T 3k26_A 96 IIRIINPITM----------------------------------------QCIKHYVGHGNAINELKFHPRDPNLLLSVS 135 (366)
T ss_dssp EEEEECTTTC----------------------------------------CEEEEEESCCSCEEEEEECSSCTTEEEEEE
T ss_pred EEEEEEchhc----------------------------------------eEeeeecCCCCcEEEEEECCCCCCEEEEEe
Confidence 9999999874 23456678999999999999 899999999
Q ss_pred CCCcEEEEECCCCeEEEEE---ecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee-----------------
Q 000085 2140 DSSDLLLHSIRRGRLIRRL---VGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA----------------- 2197 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGklIrsL---~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~----------------- 2197 (2342)
.||+|++||+++++.+..+ ..| .+..++|+++|..++.+..++.+++|++........
T Consensus 136 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (366)
T 3k26_A 136 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 215 (366)
T ss_dssp TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCC
T ss_pred CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccc
Confidence 9999999999999999998 444 478999999999999999999999999874322111
Q ss_pred -----------cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe
Q 000085 2198 -----------KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2198 -----------~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
...|...|.+++|+ ++++++++. |+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~-----------------------------------------d~~ 252 (366)
T 3k26_A 216 SQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC-----------------------------------------ENA 252 (366)
T ss_dssp CEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS-----------------------------------------SSE
T ss_pred ceeeccCccccccCCcceEEEEEEc--CCEEEEEec-----------------------------------------CCE
Confidence 11288999999998 778988863 677
Q ss_pred EEEEECCCCe--------------EEEEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCC
Q 000085 2267 ICFLDLHTLK--------------VFHVLKLGEGQDITALALNKD--NTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2267 IrIWDL~Tgk--------------~L~tL~lgHs~~ItsLafSPD--G~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
|++||+.+++ .+..+. +|...|++++|+|+ +++|++|+.||.|++|+.....
T Consensus 253 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 253 IVCWKPGKMEDDIDKIKPSESNVTILGRFD-YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp EEEEEESSTTCCGGGCCTTCCCEEEEEEEE-CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEeCCCccccccccccCCcchheecccc-ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 8888887763 377777 89999999999999 9999999999999999977653
No 84
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.92 E-value=2.9e-24 Score=255.89 Aligned_cols=268 Identities=14% Similarity=0.120 Sum_probs=209.4
Q ss_pred CcceeEEEEEcCC---CCEEEEEEcCCcEEEEecCC-cccc-eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 1995 GIRSSAVVSITHD---KEIITGGHVDGSIKLLTSDG-AKTL-ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 1995 gI~Svt~VafSpD---GklLASGS~DGsIrVWDl~t-gkll-~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
+-..+.+++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|.+.|++++|+|++++|++|+.||+|++||+.+
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 117 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS 117 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence 3445677999999 59999999999999999987 5554 78889999999999999999999999999999999987
Q ss_pred CccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEE--ecCCCEEEEEeCCCcEEEE
Q 000085 2070 AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCV--SSDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2070 g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~Vaf--SPDg~lLaSGS~DGtIrIW 2147 (2342)
+.. ..+.+|...|++++| ++++.++++++.||.|++|
T Consensus 118 ~~~-----------------------------------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 156 (368)
T 3mmy_A 118 NQA-----------------------------------------IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156 (368)
T ss_dssp TEE-----------------------------------------EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred CCc-----------------------------------------eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence 421 224569999999999 8899999999999999999
Q ss_pred ECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCce--eeeecCCCCCCeEEEEEccCCCE----EEEEe
Q 000085 2148 SIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL--VARAKLPLSGSIGCMEISLDGHS----ALIGV 2221 (2342)
Q Consensus 2148 DLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~--L~s~~~~Hs~~ItsLafSPDGk~----LaSGS 2221 (2342)
|+++++.+..+..+. ..+++...+..++....++.+.+|++.... .......+...+.++.+.+++.. +++|+
T Consensus 157 d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (368)
T 3mmy_A 157 DTRSSNPMMVLQLPE-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235 (368)
T ss_dssp CSSCSSCSEEEECSS-CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE
T ss_pred ECCCCcEEEEEecCC-CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec
Confidence 999999988888765 344444445577777788889999986432 22222235667778877776655 88898
Q ss_pred CCCCCCCCCcccccccCCCC--------------------------CCccccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2222 NSSSTNNGSYDNIQGLNSKQ--------------------------SGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2222 ~DGs~d~~i~d~Lw~l~~~~--------------------------~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
.++. ..+|++.... ...+.|+++... ...+..||.|++||+.++
T Consensus 236 ~dg~------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~----l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 236 IEGR------VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT----LATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp TTSE------EEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC----EEEEETTSCEEEEETTTT
T ss_pred CCCc------EEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCE----EEEEccCCeEEEEECCCC
Confidence 7776 3445544331 222344444322 222346999999999999
Q ss_pred eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2276 KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2276 k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
+++..+. +|...|++++|+|+|++|++|+.|+..+.|+.
T Consensus 306 ~~~~~~~-~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 306 TKLKTSE-QLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEEEECC-CCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred cEEEEec-CCCCCceEEEECCCCCeEEEEecccccccccc
Confidence 9999998 89999999999999999999999986666553
No 85
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.1e-23 Score=248.48 Aligned_cols=258 Identities=14% Similarity=0.104 Sum_probs=213.0
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++|+.+++++.|+.+++|+..++. ....+..|. ..+.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 42 ~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 112 (369)
T 3zwl_B 42 KEGDLLFSCSKDSSASVWYSLNGE------RLGTLDGHT---GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW 112 (369)
T ss_dssp TTSCEEEEEESSSCEEEEETTTCC------EEEEECCCS---SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCch------hhhhhhhcC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 356788899999999999976532 112233333 34667999999999999999999999999999998888
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCC-----CceEEEeccCCcccccc----------ccCCCC--CCccccccCCCCCce
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQD-----TTILLWRIHRAFTSRTG----------TIEPSS--GMGTPGNSIGSSTPA 2097 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~D-----GTVrVWDl~tg~~i~t~----------~~~~~~--~V~svs~SpDG~~La 2097 (2342)
. |...|.+++|+|++++|++++.+ +.|.+||+......... ...+.. .+.++++++++..++
T Consensus 113 ~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 191 (369)
T 3zwl_B 113 K-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYII 191 (369)
T ss_dssp E-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEE
T ss_pred e-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEE
Confidence 7 88999999999999999999999 99999999876533222 112222 788899999999999
Q ss_pred eecCCCc-cccccC---CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCC
Q 000085 2098 NASADKS-RRRRIE---GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEG 2172 (2342)
Q Consensus 2098 s~s~D~s-~~~~i~---~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG 2172 (2342)
++..++. ..|+.. ..+..+.+|...|.+++|+|++.++++++.||.|++||+++++.+..+... .+..++++++|
T Consensus 192 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (369)
T 3zwl_B 192 AGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLK 271 (369)
T ss_dssp EEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSS
T ss_pred EEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCC
Confidence 8888764 456653 457788899999999999999999999999999999999999999888754 47899999999
Q ss_pred cEEEEEeCCC--------------eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2173 VIMTWNKLQH--------------TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2173 ~IlVwdssdG--------------sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
..++.+..++ .+++|+............|...|++++|+|+|++|++|+.
T Consensus 272 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 335 (369)
T 3zwl_B 272 EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE 335 (369)
T ss_dssp SEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC
Confidence 9999988777 7899998754444445569999999999999999999973
No 86
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=1.2e-23 Score=258.93 Aligned_cols=248 Identities=17% Similarity=0.246 Sum_probs=202.8
Q ss_pred EEEEcCCCC-EEEEEEcCCcEEEEecCCc----ccceecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCcccc
Q 000085 2001 VVSITHDKE-IITGGHVDGSIKLLTSDGA----KTLETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2001 ~VafSpDGk-lLASGS~DGsIrVWDl~tg----kll~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
+++++|+.. ++++|+.||.|+||++... +.+..+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++....
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~ 118 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL 118 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence 377888876 4556889999999998653 34567889999999999999 99999999999999999998753211
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCe
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
....++..+.+|...|++++|+|++ .++++|+.||+|++||+++++
T Consensus 119 ---------------------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 165 (402)
T 2aq5_A 119 ---------------------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA 165 (402)
T ss_dssp ---------------------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE
T ss_pred ---------------------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC
Confidence 1124566788999999999999998 699999999999999999999
Q ss_pred EEEEE--ecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeec-CCCCCC-eEEEEEccCCCEEEEEeCCCCCC
Q 000085 2154 LIRRL--VGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAK-LPLSGS-IGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2154 lIrsL--~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~-~~Hs~~-ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
.+..+ ..|. +..++|+++|..++.+..++.+++|++......... ..|.+. +.++.|+|+|.++++|....
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~--- 242 (402)
T 2aq5_A 166 AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM--- 242 (402)
T ss_dssp EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT---
T ss_pred ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC---
Confidence 99999 5554 789999999999999999999999999754433333 457665 99999999999999884211
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE-EEEEecCCCCCeEEEEEecCCCEEEE-Ee
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV-FHVLKLGEGQDITALALNKDNTNLLV-ST 2305 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~-L~tL~lgHs~~ItsLafSPDG~~LaS-GS 2305 (2342)
.|+.|++||+.+++. +......|...|.+++|+|++.+|++ |+
T Consensus 243 -----------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~ 287 (402)
T 2aq5_A 243 -----------------------------------SERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGK 287 (402)
T ss_dssp -----------------------------------CCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEET
T ss_pred -----------------------------------CCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEc
Confidence 278899999988654 44444467888999999999999975 55
Q ss_pred CCCcEEEEeCCCCC
Q 000085 2306 ADKQLIVFTDPALS 2319 (2342)
Q Consensus 2306 sDGsIrVWDi~sLs 2319 (2342)
.||.|++|+.....
T Consensus 288 ~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 288 GDSSIRYFEITSEA 301 (402)
T ss_dssp TCSCEEEEEECSST
T ss_pred CCCeEEEEEecCCC
Confidence 79999999976553
No 87
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.92 E-value=6e-23 Score=256.05 Aligned_cols=264 Identities=19% Similarity=0.215 Sum_probs=215.0
Q ss_pred EcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCC
Q 000085 2004 ITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSG 2083 (2342)
Q Consensus 2004 fSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~ 2083 (2342)
++++|++|++|+.||+|++||+.+++.+..+.+|.+.|++++|+ +++|++|+.||+|++||+.++...... ..+...
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~ 201 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL-YGHTST 201 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSC
T ss_pred EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEE-CCCCCc
Confidence 55578999999999999999999999999999999999999997 679999999999999999987655443 356666
Q ss_pred CccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 000085 2084 MGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG 2160 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g 2160 (2342)
+.++.++ +..+++++.++. ..|+. ...+..+.+|...|++++| ++.++++|+.||.|++||+++++.+..+.+
T Consensus 202 v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 277 (445)
T 2ovr_B 202 VRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG 277 (445)
T ss_dssp EEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC
T ss_pred EEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC
Confidence 7777664 566777777764 44654 4567788889999999988 678899999999999999999999988887
Q ss_pred CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC
Q 000085 2161 VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK 2240 (2342)
Q Consensus 2161 h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~ 2240 (2342)
|.....++..+|..++.+..++.+++|++...........|...+.++.++ +.++++|+.
T Consensus 278 ~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~------------------ 337 (445)
T 2ovr_B 278 HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNA------------------ 337 (445)
T ss_dssp CSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEET------------------
T ss_pred CCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeC------------------
Confidence 764444444488888888889999999986444444445588888888774 668888862
Q ss_pred CCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec--CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2241 QSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL--GEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2241 ~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l--gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
||.|++||+.+++.+..+.. .|...|++++|+ +.+|++|+.||.|++||....
T Consensus 338 -----------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 338 -----------------------DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp -----------------------TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred -----------------------CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence 67899999999999999872 288899999995 679999999999999997655
Q ss_pred C
Q 000085 2319 S 2319 (2342)
Q Consensus 2319 s 2319 (2342)
.
T Consensus 393 ~ 393 (445)
T 2ovr_B 393 E 393 (445)
T ss_dssp C
T ss_pred c
Confidence 3
No 88
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=1.6e-23 Score=261.68 Aligned_cols=244 Identities=14% Similarity=0.162 Sum_probs=202.1
Q ss_pred eeEEEEEcCC-CCEEEEEEcCCcEEEEecCC----------cccceecccCCCCeEEEEecCCCC-EEEEEeCCCceEEE
Q 000085 1998 SSAVVSITHD-KEIITGGHVDGSIKLLTSDG----------AKTLETASGHCAPVTCLALSSDSN-FLVTGSQDTTILLW 2065 (2342)
Q Consensus 1998 Svt~VafSpD-GklLASGS~DGsIrVWDl~t----------gkll~tL~GHt~~VtcLAfSPDG~-~LaSGS~DGTVrVW 2065 (2342)
.+++++|+|+ +.+|++|+.||.|+||++.+ .+.+..+.+|...|++++|+|++. +|++|+.||+|++|
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 209 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 209 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEE
Confidence 4566999998 67999999999999999987 577788899999999999999988 99999999999999
Q ss_pred eccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcE
Q 000085 2066 RIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDL 2144 (2342)
Q Consensus 2066 Dl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtI 2144 (2342)
|+..+..... ...+...+.+|...|.+++|+| ++.++++++.||.|
T Consensus 210 d~~~~~~~~~---------------------------------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i 256 (430)
T 2xyi_A 210 DINATPKEHR---------------------------------VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256 (430)
T ss_dssp ETTSCCBGGG---------------------------------EEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred eCCCCCCCCc---------------------------------eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeE
Confidence 9987421100 0122456678999999999999 68899999999999
Q ss_pred EEEECCCC---eEEEEEecCC--cEEEEEecCCc-EEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCCC-E
Q 000085 2145 LLHSIRRG---RLIRRLVGVD--AHAVSLSSEGV-IMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDGH-S 2216 (2342)
Q Consensus 2145 rIWDLrTG---klIrsL~gh~--vssLSfSpDG~-IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk-~ 2216 (2342)
++||++++ ..+..+..|. +..++|+|++. +++.+..+|.|++|++.. .........|...|++++|+|++. +
T Consensus 257 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp EEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred EEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCE
Confidence 99999987 5667776654 78999999997 788889999999999974 222223334899999999999996 5
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC--------------CeEEEEEe
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT--------------LKVFHVLK 2282 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T--------------gk~L~tL~ 2282 (2342)
+++|+. |+.|+|||+.. .+.+..+.
T Consensus 337 l~s~~~-----------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (430)
T 2xyi_A 337 LASSGT-----------------------------------------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 375 (430)
T ss_dssp EEEEET-----------------------------------------TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC
T ss_pred EEEEeC-----------------------------------------CCcEEEEeCCCCccccCccccccCCcceEEEcC
Confidence 777753 56788888876 35666666
Q ss_pred cCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCC
Q 000085 2283 LGEGQDITALALNKDNT-NLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2283 lgHs~~ItsLafSPDG~-~LaSGSsDGsIrVWDi~ 2316 (2342)
+|...|++++|+|++. +|++++.||.|+||++.
T Consensus 376 -~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 376 -GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp -CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred -CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 8999999999999999 89999999999999954
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.92 E-value=2.2e-24 Score=261.07 Aligned_cols=228 Identities=9% Similarity=0.012 Sum_probs=176.4
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc---c
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK---T 2030 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk---l 2030 (2342)
.++|+.+++++.|+.+++|+..++ .+.....+..|. ..+.+++|+|++++|++|+.|++|++||+.+++ .
T Consensus 20 s~~g~~l~~~~~d~~i~iw~~~~~----~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 20 NSQRTEFVTTTATNQVELYEQDGN----GWKHARTFSDHD---KIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CSSSSEEECCCSSSCBCEEEEETT----EEEECCCBCCCS---SCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred CCCCCEEEEecCCCEEEEEEccCC----ceEEEEEEecCC---ceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 356888999999999999997652 112222333343 446679999999999999999999999999887 6
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc---ccccccCCCCCCccccccCCCCCceeecCCCc-cc
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT---SRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RR 2106 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~---i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~ 2106 (2342)
...+.+|...|++++|+|++++|++|+.|++|++||+.++.. .......+...+.+++++|++..+++++.++. ..
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~i 172 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEE
T ss_pred eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEE
Confidence 677889999999999999999999999999999999998753 33333337889999999999999999888864 45
Q ss_pred ccc--------------------CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE----EEEEecCC
Q 000085 2107 RRI--------------------EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL----IRRLVGVD 2162 (2342)
Q Consensus 2107 ~~i--------------------~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl----IrsL~gh~ 2162 (2342)
|+. ..++..+ +|...|++++|+|+++++++|+.||+|++||+++++. +..+.+|.
T Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 251 (377)
T 3dwl_C 173 LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ 251 (377)
T ss_dssp EEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSS
T ss_pred EEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC
Confidence 665 2344555 9999999999999999999999999999999999887 77777765
Q ss_pred --cEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2163 --AHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2163 --vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
+..++|+++|.+++.+..++.+ +|...
T Consensus 252 ~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 252 LPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 7899999999998888655554 66654
No 90
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.1e-24 Score=277.31 Aligned_cols=241 Identities=15% Similarity=0.046 Sum_probs=183.6
Q ss_pred cCCCCEEEEEEcCCcEEEEecCCcccc----eecccCCCCeEEEEecCC------CCEEEEEeCCCceEEEeccCCcccc
Q 000085 2005 THDKEIITGGHVDGSIKLLTSDGAKTL----ETASGHCAPVTCLALSSD------SNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2005 SpDGklLASGS~DGsIrVWDl~tgkll----~tL~GHt~~VtcLAfSPD------G~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
+|+++++++|+.|++|+|||+.+++.. .++.+|.+.|++++|+|+ +.+|+||+.||+|+|||+.++....
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 688999999999999999999887653 456778899999999996 5799999999999999997643210
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR- 2153 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk- 2153 (2342)
.. ......+...+.+|...|++++|+++ ..|++|+.||+|++||++++.
T Consensus 250 ~~-----------------------------~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~ 299 (524)
T 2j04_B 250 HV-----------------------------FKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEV 299 (524)
T ss_dssp SE-----------------------------EECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSS
T ss_pred cc-----------------------------ceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCC
Confidence 00 00112345678899999999999986 489999999999999999874
Q ss_pred EEEEEecCC--cEEE--EEecCC-cEEEEEeCCCeEEEEEeCCceeeeecCCCC--CCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2154 LIRRLVGVD--AHAV--SLSSEG-VIMTWNKLQHTLSSFTLNGVLVARAKLPLS--GSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2154 lIrsL~gh~--vssL--SfSpDG-~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs--~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
....+.+|. +..+ +++++| .+++.+..|+++++|++...........|. ..|.+++|+|+++.+++++.
T Consensus 300 ~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~---- 375 (524)
T 2j04_B 300 PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG---- 375 (524)
T ss_dssp CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECS----
T ss_pred ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCC----
Confidence 445677775 6666 568888 899999999999999986422211112233 35889999999999998752
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs 2306 (2342)
|++|++||+.++.++.++. +|...|++|+|+|+|++|++|+.
T Consensus 376 -------------------------------------d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~ 417 (524)
T 2j04_B 376 -------------------------------------ASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHPMVLAGSA 417 (524)
T ss_dssp -------------------------------------SSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCCBCEEEET
T ss_pred -------------------------------------CCcEEEEECcccccceeee-cCCCceEEEEeCCCCCeEEEEEC
Confidence 6789999999999888888 89999999999999999999999
Q ss_pred CCcEEEEeCCC
Q 000085 2307 DKQLIVFTDPA 2317 (2342)
Q Consensus 2307 DGsIrVWDi~s 2317 (2342)
||+|++|+...
T Consensus 418 Dgtv~lwd~~~ 428 (524)
T 2j04_B 418 DGSLIITNAAR 428 (524)
T ss_dssp TTEEECCBSCS
T ss_pred CCEEEEEechH
Confidence 99999999643
No 91
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.3e-23 Score=241.10 Aligned_cols=271 Identities=16% Similarity=0.168 Sum_probs=216.4
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc---c
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA---K 2029 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg---k 2029 (2342)
.|+++..+++++.|+.+++|+..++ .....+..|. ..+.+++|+|++++|++|+.||.|++|++... +
T Consensus 25 ~~~~~~~l~s~~~dg~v~vw~~~~~------~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 95 (313)
T 3odt_A 25 VAVDDSKVASVSRDGTVRLWSKDDQ------WLGTVVYTGQ---GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED 95 (313)
T ss_dssp EEEETTEEEEEETTSEEEEEEESSS------EEEEEEEECS---SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC
T ss_pred EecCCCEEEEEEcCCcEEEEECCCC------EEEEEeecCC---ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC
Confidence 3467888999999999999996541 1122233333 34667999999999999999999999998754 5
Q ss_pred cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccC-CCCCceeecCCCc-ccc
Q 000085 2030 TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI-GSSTPANASADKS-RRR 2107 (2342)
Q Consensus 2030 ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp-DG~~Las~s~D~s-~~~ 2107 (2342)
.+..+.+|...|++++| ++++|++|+.|++|++|| .+..... ...+...+..+.+.+ ++..++++..++. ..|
T Consensus 96 ~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 96 PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYN-LQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp C-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEE-EECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEe-cccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 67788999999999999 578999999999999999 2222222 345677788888887 8888888887765 568
Q ss_pred ccCCceEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeE
Q 000085 2108 RIEGPIHVLRG-HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTL 2184 (2342)
Q Consensus 2108 ~i~~~l~~L~G-Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI 2184 (2342)
+.......+.. |...|.+++|+|++. +++++.||.|++||+++++.+..+.+|. +..++++++|. ++.+..++.+
T Consensus 171 d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v 248 (313)
T 3odt_A 171 QNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTV 248 (313)
T ss_dssp ETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEETTSEE
T ss_pred ecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEecCCEE
Confidence 87777888888 999999999999988 9999999999999999999999998765 78999999995 6777889999
Q ss_pred EEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCC
Q 000085 2185 SSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPS 2264 (2342)
Q Consensus 2185 ~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~D 2264 (2342)
++|++...........|...|++++|+|+|+++ +++. |
T Consensus 249 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~-----------------------------------------d 286 (313)
T 3odt_A 249 RIWSKENGSLKQVITLPAISIWSVDCMSNGDII-VGSS-----------------------------------------D 286 (313)
T ss_dssp EEECTTTCCEEEEEECSSSCEEEEEECTTSCEE-EEET-----------------------------------------T
T ss_pred EEEECCCCceeEEEeccCceEEEEEEccCCCEE-EEeC-----------------------------------------C
Confidence 999987544444445588899999999999955 4542 6
Q ss_pred CeEEEEECCCCeEEEEE
Q 000085 2265 PSICFLDLHTLKVFHVL 2281 (2342)
Q Consensus 2265 GsIrIWDL~Tgk~L~tL 2281 (2342)
|.|++||+.+++.+...
T Consensus 287 g~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 287 NLVRIFSQEKSRWASED 303 (313)
T ss_dssp SCEEEEESCGGGCCC--
T ss_pred CcEEEEeCCCCceeehh
Confidence 78999999887755443
No 92
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.91 E-value=9.4e-23 Score=241.99 Aligned_cols=223 Identities=14% Similarity=0.132 Sum_probs=179.0
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC--CCEEEEEEcCCcEEEEecCCcc--c
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD--KEIITGGHVDGSIKLLTSDGAK--T 2030 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD--GklLASGS~DGsIrVWDl~tgk--l 2030 (2342)
++|+.+++++.|+++++|+..+.. ......+..|.. .+.+++|+++ +++|++|+.|++|+|||+.+++ .
T Consensus 19 ~~g~~las~s~D~~v~iw~~~~~~----~~~~~~l~gH~~---~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~ 91 (297)
T 2pm7_B 19 YYGKRMATCSSDKTIKIFEVEGET----HKLIDTLTGHEG---PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ 91 (297)
T ss_dssp TTSSEEEEEETTSCEEEEEBCSSC----BCCCEEECCCSS---CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC
T ss_pred CCCCEEEEEeCCCEEEEEecCCCC----cEEEEEEccccC---CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE
Confidence 568889999999999999865311 112233444544 4566999864 8999999999999999999874 5
Q ss_pred ceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2031 LETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
+..+.+|...|.+++|+|+ +.+|++|+.|++|++||+.+...
T Consensus 92 ~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~------------------------------------ 135 (297)
T 2pm7_B 92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT------------------------------------ 135 (297)
T ss_dssp CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC------------------------------------
T ss_pred EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc------------------------------------
Confidence 6678899999999999997 89999999999999999976311
Q ss_pred cCCceEEecCCCCCeEEEEEecC-------------CCEEEEEeCCCcEEEEECCCCe----EEEEEecCC--cEEEEEe
Q 000085 2109 IEGPIHVLRGHHREILCCCVSSD-------------LGVVVSCSDSSDLLLHSIRRGR----LIRRLVGVD--AHAVSLS 2169 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSPD-------------g~lLaSGS~DGtIrIWDLrTGk----lIrsL~gh~--vssLSfS 2169 (2342)
.....+.+|...|++++|+|+ +++|++|+.||+|++||++++. ....+.+|. +..++|+
T Consensus 136 --~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~s 213 (297)
T 2pm7_B 136 --TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213 (297)
T ss_dssp --BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred --eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEEC
Confidence 012346789999999999986 5799999999999999998876 667788775 7899999
Q ss_pred cCC---cEEEEEeCCCeEEEEEeCCce---eeeec--CCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2170 SEG---VIMTWNKLQHTLSSFTLNGVL---VARAK--LPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2170 pDG---~IlVwdssdGsI~I~dlnG~~---L~s~~--~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
|++ .+++.+..++.+++|++.... ..... ..|...|.+++|+|+|++|++|+.
T Consensus 214 p~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~ 274 (297)
T 2pm7_B 214 PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (297)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred CCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence 995 889999999999999987421 11112 247889999999999999999973
No 93
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.91 E-value=5.3e-23 Score=249.01 Aligned_cols=316 Identities=13% Similarity=0.066 Sum_probs=207.9
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceec----cccCcceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCccc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAF----ASSGIRSSAVVSITH-DKEIITGGHVDGSIKLLTSDGAKT 2030 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~----hs~gI~Svt~VafSp-DGklLASGS~DGsIrVWDl~tgkl 2030 (2342)
++..+++++.|+.+++|+..++.............. ...+...+.+++|+| ++++|++|+.||.|++||+.+++.
T Consensus 55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 134 (408)
T 4a11_B 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT 134 (408)
T ss_dssp TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc
Confidence 577889999999999999776433222111100000 012445677799999 777999999999999999999988
Q ss_pred ceecccCCCCeEEEEecCC---CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCC-ceeecCCCc-c
Q 000085 2031 LETASGHCAPVTCLALSSD---SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST-PANASADKS-R 2105 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPD---G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~-Las~s~D~s-~ 2105 (2342)
...+. |...+.+++|++. +.++++|+.|+.|++||+.++...... ..+...+.++.++|++.. ++++..++. .
T Consensus 135 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~ 212 (408)
T 4a11_B 135 ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVK 212 (408)
T ss_dssp EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence 87776 7888999999984 459999999999999999987655443 457788999999999996 677777764 4
Q ss_pred ccccCC---ceEEe---------------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-----
Q 000085 2106 RRRIEG---PIHVL---------------RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD----- 2162 (2342)
Q Consensus 2106 ~~~i~~---~l~~L---------------~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~----- 2162 (2342)
.|+... +...+ .+|...|++++|+|++.++++++.||.|++||+++++....+..+.
T Consensus 213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 292 (408)
T 4a11_B 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK 292 (408)
T ss_dssp EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS
T ss_pred EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccc
Confidence 565532 23333 6799999999999999999999999999999999987655443321
Q ss_pred --cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC
Q 000085 2163 --AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK 2240 (2342)
Q Consensus 2163 --vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~ 2240 (2342)
.........+..+++...++.+++|++...........|...|++++|+|+|++|++|+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------------------ 354 (408)
T 4a11_B 293 KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR------------------ 354 (408)
T ss_dssp SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEET------------------
T ss_pred ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECC------------------
Confidence 122222333444555566788888988654444445569999999999999999999973
Q ss_pred CCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCC
Q 000085 2241 QSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK-DNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2241 ~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP-DG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
||.|++||+.+++.+.... .+. ....+.+ +...+.+++.|+.+++|+.+..
T Consensus 355 -----------------------dg~i~iw~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 406 (408)
T 4a11_B 355 -----------------------DCNILAWVPSLYEPVPDDD-ETT---TKSQLNPAFEDAWSSSDEEGGTSAWSHPQF 406 (408)
T ss_dssp -----------------------TSCEEEEEECC---------------------------------------------
T ss_pred -----------------------CCeEEEEeCCCCCccCCCC-ceE---eccccccccceeecccCccCceeecCCccc
Confidence 6779999999988776554 221 1223333 3344567788999999997654
No 94
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9e-24 Score=283.46 Aligned_cols=241 Identities=11% Similarity=0.069 Sum_probs=203.0
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecC--CcccceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCcc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSD--GAKTLETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~--tgkll~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
..+.+++|+|+|++|++|+.||+|+|||+. +++.+.++.+|.+.|++++|+++ +++|++|+.||+|++||+.++..
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~ 89 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 456679999999999999999999999998 56778889999999999999988 99999999999999999987421
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIWDLr 2150 (2342)
.....+.+|...|++++|+|+ +..+++|+.||+|++||++
T Consensus 90 --------------------------------------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 90 --------------------------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp --------------------------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred --------------------------------------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 134566789999999999999 9999999999999999998
Q ss_pred CCe--EEEEEecC--CcEEEEEec-------------CCcEEEEEeCCCeEEEEEeCCc----eeeeecCCCCCCeEEEE
Q 000085 2151 RGR--LIRRLVGV--DAHAVSLSS-------------EGVIMTWNKLQHTLSSFTLNGV----LVARAKLPLSGSIGCME 2209 (2342)
Q Consensus 2151 TGk--lIrsL~gh--~vssLSfSp-------------DG~IlVwdssdGsI~I~dlnG~----~L~s~~~~Hs~~ItsLa 2209 (2342)
++. ....+.+| .+..++++| +|..++.+..+|.|++|++... ........|...|++++
T Consensus 132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 211 (753)
T 3jro_A 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211 (753)
T ss_dssp SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE
Confidence 873 33444454 378899999 5899999999999999998643 33334445999999999
Q ss_pred EccC---CCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe-----EEEEE
Q 000085 2210 ISLD---GHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK-----VFHVL 2281 (2342)
Q Consensus 2210 fSPD---Gk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk-----~L~tL 2281 (2342)
|+|+ |.++++|+. ||.|++||+.+++ .+...
T Consensus 212 ~sp~~~~~~~l~s~s~-----------------------------------------Dg~I~iwd~~~~~~~~~~~~~~~ 250 (753)
T 3jro_A 212 WSPTVLLRSYLASVSQ-----------------------------------------DRTCIIWTQDNEQGPWKKTLLKE 250 (753)
T ss_dssp ECCCCSSSEEEEEEES-----------------------------------------SSCEEEEEESSSSSCCBCCBSSS
T ss_pred eccCCCCCCEEEEEec-----------------------------------------CCEEEEecCCCCCCcceeEEecc
Confidence 9999 899999873 6779999998763 12222
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2282 KLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2282 ~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
. +|...|++++|+|+|++|++|+.||.|++|+...
T Consensus 251 ~-~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 251 E-KFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp S-CCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred C-CCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 2 5788999999999999999999999999999763
No 95
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.91 E-value=3.2e-23 Score=246.79 Aligned_cols=255 Identities=9% Similarity=0.061 Sum_probs=194.1
Q ss_pred eEEecCC---CceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC---CCEEEEEEcCCcEEEEecCCcc-cc
Q 000085 1959 ASASPAS---GTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD---KEIITGGHVDGSIKLLTSDGAK-TL 2031 (2342)
Q Consensus 1959 ~LaSsSs---D~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD---GklLASGS~DGsIrVWDl~tgk-ll 2031 (2342)
.+++++. |+.+++|+..++.... .....| ...+.+++|+|+ +++|++|+.||.|++||+.+++ .+
T Consensus 33 l~~~~s~~~~d~~v~iw~~~~~~~~~-----~~~~~~---~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 104 (357)
T 3i2n_A 33 FVTMGNFARGTGVIQLYEIQHGDLKL-----LREIEK---AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPV 104 (357)
T ss_dssp EEEEEC--CCCEEEEEEEECSSSEEE-----EEEEEE---SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCS
T ss_pred EEEecCccCCCcEEEEEeCCCCcccc-----eeeecc---cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccE
Confidence 3445554 8999999976522110 001122 345677999999 6999999999999999999988 88
Q ss_pred eecccCCCCeEEE------EecCCCCEEEEEeCCCceEEEeccCCc-cccccc---cCCCCCCcccc----ccCCCCCce
Q 000085 2032 ETASGHCAPVTCL------ALSSDSNFLVTGSQDTTILLWRIHRAF-TSRTGT---IEPSSGMGTPG----NSIGSSTPA 2097 (2342)
Q Consensus 2032 ~tL~GHt~~VtcL------AfSPDG~~LaSGS~DGTVrVWDl~tg~-~i~t~~---~~~~~~V~svs----~SpDG~~La 2097 (2342)
..+.+|.+.|+++ +|+|++++|++|+.|++|++||+.++. ...... ......+.++. +++++..++
T Consensus 105 ~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 184 (357)
T 3i2n_A 105 YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVC 184 (357)
T ss_dssp EEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEE
T ss_pred EEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEE
Confidence 8999999999999 457899999999999999999999875 333331 11133566666 788999999
Q ss_pred eecCCCc-cccccCCc-eEEecCCCCCeEEEEEec---CCCEEEEEeCCCcEEEEECCCCeEEEEEe-----cCC--cEE
Q 000085 2098 NASADKS-RRRRIEGP-IHVLRGHHREILCCCVSS---DLGVVVSCSDSSDLLLHSIRRGRLIRRLV-----GVD--AHA 2165 (2342)
Q Consensus 2098 s~s~D~s-~~~~i~~~-l~~L~GHs~~Vt~VafSP---Dg~lLaSGS~DGtIrIWDLrTGklIrsL~-----gh~--vss 2165 (2342)
++..++. ..|+.... ......|...|++++|+| ++.++++|+.||.|++||+++++.+..+. +|. +..
T Consensus 185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~ 264 (357)
T 3i2n_A 185 AGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQ 264 (357)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEE
T ss_pred EEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEE
Confidence 8888754 55666432 345577899999999999 99999999999999999998876544433 553 788
Q ss_pred EEEecCCc-EEEEEeCCCeEEEEEeCCc-------------------eeeeecCCCCCCeEEEEEccCCCEEE-EEe
Q 000085 2166 VSLSSEGV-IMTWNKLQHTLSSFTLNGV-------------------LVARAKLPLSGSIGCMEISLDGHSAL-IGV 2221 (2342)
Q Consensus 2166 LSfSpDG~-IlVwdssdGsI~I~dlnG~-------------------~L~s~~~~Hs~~ItsLafSPDGk~La-SGS 2221 (2342)
++|+|+|. +++.+..+|.+++|++... ........|...|++++|+|+|++++ +|+
T Consensus 265 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~ 341 (357)
T 3i2n_A 265 VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS 341 (357)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEE
T ss_pred EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEec
Confidence 99999998 7888899999999998631 12222334899999999999999998 676
No 96
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.91 E-value=1.1e-22 Score=250.85 Aligned_cols=235 Identities=14% Similarity=0.210 Sum_probs=197.4
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc-CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG-HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G-Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
.+++|++ ..+++++.|+.|++||+.+++....+.. |...|++++|+|++++|++|+.||+|++||+.++.
T Consensus 97 ~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~------- 167 (401)
T 4aez_A 97 NLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT------- 167 (401)
T ss_dssp BCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------
T ss_pred EEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-------
Confidence 3466765 4466777899999999999998877765 89999999999999999999999999999998742
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCeEEEE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR-RGRLIRR 2157 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr-TGklIrs 2157 (2342)
.+..+.+|...|.+++| ++.++++|+.||.|++||++ .+..+..
T Consensus 168 ---------------------------------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 212 (401)
T 4aez_A 168 ---------------------------------KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGT 212 (401)
T ss_dssp ---------------------------------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred ---------------------------------EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeE
Confidence 34556789999999999 46799999999999999999 5677888
Q ss_pred EecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccc
Q 000085 2158 LVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQ 2235 (2342)
Q Consensus 2158 L~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw 2235 (2342)
+.+|. +..++|+++|.+++.+..++.|++|++...........|...|.+++|+|++..+++.+. +.
T Consensus 213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs---------- 281 (401)
T 4aez_A 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GT---------- 281 (401)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CT----------
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CC----------
Confidence 87764 788999999999999999999999999854444444569999999999998755544321 11
Q ss_pred ccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE--eCCCcEEEE
Q 000085 2236 GLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS--TADKQLIVF 2313 (2342)
Q Consensus 2236 ~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG--SsDGsIrVW 2313 (2342)
.|+.|++||+.+++++..+. |...|++++|+|++++|+++ +.||.|++|
T Consensus 282 ---------------------------~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 282 ---------------------------MDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp ---------------------------TTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEE
T ss_pred ---------------------------CCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEE
Confidence 27899999999999998887 66789999999999999995 489999999
Q ss_pred eCCCC
Q 000085 2314 TDPAL 2318 (2342)
Q Consensus 2314 Di~sL 2318 (2342)
+....
T Consensus 333 ~~~~~ 337 (401)
T 4aez_A 333 SYSSS 337 (401)
T ss_dssp EEETT
T ss_pred ecCCc
Confidence 97653
No 97
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.91 E-value=3.3e-23 Score=258.95 Aligned_cols=257 Identities=14% Similarity=0.087 Sum_probs=190.0
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH-DKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp-DGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++..+++|+.|++|++|+..++...... ....| ...|++++|+| ++++|++|+.||+|+|||+.++......
T Consensus 131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~----~~~gH---~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 203 (435)
T 4e54_B 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFI----KGIGA---GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA 203 (435)
T ss_dssp CTTCEEEEETTSCEEEECSSCCSCCEEE----CCCSS---SCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceeEE----EccCC---CCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe
Confidence 3567889999999999987653221111 11223 34566799998 6889999999999999999876443333
Q ss_pred c--cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCC-ceeecCCCc-cccccC
Q 000085 2035 S--GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST-PANASADKS-RRRRIE 2110 (2342)
Q Consensus 2035 ~--GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~-Las~s~D~s-~~~~i~ 2110 (2342)
. .+...|++++|+|++++|++|+.||+|++||+... .... ...|...|.+++|+|++.. +++++.|+. ..|++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~-~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~ 281 (435)
T 4e54_B 204 SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281 (435)
T ss_dssp CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCC-SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETT
T ss_pred ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEE-EecccceEEeeeecCCCceEEEEecCcceeeEEecc
Confidence 3 34456899999999999999999999999999753 2222 3567788999999999875 567777764 456653
Q ss_pred C-----ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--------cEEEEEecCCcEEEE
Q 000085 2111 G-----PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--------AHAVSLSSEGVIMTW 2177 (2342)
Q Consensus 2111 ~-----~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--------vssLSfSpDG~IlVw 2177 (2342)
. ......+|...|++++|+|++.+|++|+.||+|++||++++.+...+..|. .....+++++.+++.
T Consensus 282 ~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (435)
T 4e54_B 282 QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV 361 (435)
T ss_dssp TCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEE
T ss_pred cccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEE
Confidence 2 233456899999999999999999999999999999999998887776542 122345555544443
Q ss_pred E-----------eC-CCeEEEEEeC-CceeeeecCCCCCCeEEE-EEccCCCEEEEEe
Q 000085 2178 N-----------KL-QHTLSSFTLN-GVLVARAKLPLSGSIGCM-EISLDGHSALIGV 2221 (2342)
Q Consensus 2178 d-----------ss-dGsI~I~dln-G~~L~s~~~~Hs~~ItsL-afSPDGk~LaSGS 2221 (2342)
+ .. ++.|++|+.. |..+.....+|...|.++ +|+|+|.+|++|+
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~ 419 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM 419 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence 3 22 3569999986 555555555688899988 6999999999874
No 98
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=2.1e-23 Score=258.06 Aligned_cols=251 Identities=10% Similarity=0.032 Sum_probs=172.8
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCccc-----ceecccCCCCeEEEEecC--------CCCEEEEEeCCCceEEEec
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKT-----LETASGHCAPVTCLALSS--------DSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkl-----l~tL~GHt~~VtcLAfSP--------DG~~LaSGS~DGTVrVWDl 2067 (2342)
...+++++.+|++|+.|++|+|||..++.. +..+.||.+.|++++|+| |+++|+|||.|++|+|||+
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 355677788999999999999999988754 356889999999999998 8899999999999999999
Q ss_pred cCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEE
Q 000085 2068 HRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLG-VVVSCSDSSDLLL 2146 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~-lLaSGS~DGtIrI 2146 (2342)
.++. +...+.+|...|.+++|+|++. ++++|+.||+|++
T Consensus 174 ~~~~----------------------------------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~ 213 (393)
T 4gq1_A 174 TDEG----------------------------------------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRI 213 (393)
T ss_dssp ETTE----------------------------------------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred CCCc----------------------------------------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEE
Confidence 7742 3345677889999999999874 7999999999999
Q ss_pred EECCCCeEEEEEec-------------------------C--CcEEEEEe-cCCcEEEEEeCCCeEEEEEeCCceeeeec
Q 000085 2147 HSIRRGRLIRRLVG-------------------------V--DAHAVSLS-SEGVIMTWNKLQHTLSSFTLNGVLVARAK 2198 (2342)
Q Consensus 2147 WDLrTGklIrsL~g-------------------------h--~vssLSfS-pDG~IlVwdssdGsI~I~dlnG~~L~s~~ 2198 (2342)
||+++++....... | .+..+.++ +||..++....++.+++|++.........
T Consensus 214 wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l 293 (393)
T 4gq1_A 214 FDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI 293 (393)
T ss_dssp EETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------
T ss_pred EECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE
Confidence 99998876544321 1 13456665 89999999999999999998754444434
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEE
Q 000085 2199 LPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVF 2278 (2342)
Q Consensus 2199 ~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L 2278 (2342)
..|...+..+.+.++++.+..... . ....+.+.... .....+..||.|++||+.+++.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~--~-----------------~~~~~~~~~~~--~~~~sgs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 294 SDSTMKLGPKNLLPNVQGISLFPS--L-----------------LGACPHPRYMD--YFATAHSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp ----------CCSCSEEEECSSCC--S-----------------SCCEECSSCTT--EEEEEETTTTEEEEEETTCTTCC
T ss_pred eeecCccccEEEccccccccccCc--c-----------------eeEEEccCCCC--EEEEEECCCCEEEEEECCCCcEE
Confidence 447777888888777654431110 0 00011111000 00011235899999999999888
Q ss_pred EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2279 HVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2279 ~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
..+. +|..+|++++|+|||++|++++.|| +.+|.
T Consensus 353 ~~~~-~~~~~V~svafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 353 SIPI-QLGMPIVDFCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp EEEE-ECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred EEec-CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence 7777 7889999999999999999998766 55555
No 99
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=5.8e-23 Score=240.88 Aligned_cols=263 Identities=12% Similarity=0.058 Sum_probs=179.2
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC--CCCEEEEEEcCCcEEEEecCCc----
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH--DKEIITGGHVDGSIKLLTSDGA---- 2028 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp--DGklLASGS~DGsIrVWDl~tg---- 2028 (2342)
+++..+++++.|+.+++|+..++.. .+.....+..|. ..+.+++|+| ++++|++|+.||.|++||+.++
T Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~---~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~ 95 (351)
T 3f3f_A 21 FYGRHVATCSSDQHIKVFKLDKDTS--NWELSDSWRAHD---SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC 95 (351)
T ss_dssp SSSSEEEEEETTSEEEEEEECSSSC--CEEEEEEEECCS---SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT
T ss_pred CCCCEEEEeeCCCeEEEEECCCCCC--cceecceeccCC---CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc
Confidence 3567889999999999999765221 122222333343 4466799999 6999999999999999999887
Q ss_pred -----ccceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCccccccc------------cCCCCCCccccc
Q 000085 2029 -----KTLETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFTSRTGT------------IEPSSGMGTPGN 2089 (2342)
Q Consensus 2029 -----kll~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~i~t~~------------~~~~~~V~svs~ 2089 (2342)
+.+..+.+|.+.|++++|+|+ +.+|++|+.|++|++||+.++....... ..+...+.++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (351)
T 3f3f_A 96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 175 (351)
T ss_dssp SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence 457788899999999999999 9999999999999999998876544321 245667888999
Q ss_pred cCC---CCCceeecCCCcccccc---CC--ceEEecCCCCCeEEEEEecCC----CEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2090 SIG---SSTPANASADKSRRRRI---EG--PIHVLRGHHREILCCCVSSDL----GVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2090 SpD---G~~Las~s~D~s~~~~i---~~--~l~~L~GHs~~Vt~VafSPDg----~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
+|+ +..++++..++...+.. .. .+..+.+|...|++++|+|++ .++++|+.||+|++||++++.....
T Consensus 176 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 255 (351)
T 3f3f_A 176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA 255 (351)
T ss_dssp CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----
T ss_pred ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc
Confidence 997 88888888877655332 11 266788999999999999998 8999999999999999988755443
Q ss_pred EecCC--cEEEEEecCCcEEEEEeC----CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2158 LVGVD--AHAVSLSSEGVIMTWNKL----QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2158 L~gh~--vssLSfSpDG~IlVwdss----dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
..... ......+++......+.. ...+.+|+............|...|++++|+|+|++|++|+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 326 (351)
T 3f3f_A 256 SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGD 326 (351)
T ss_dssp -----------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEET
T ss_pred cCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecC
Confidence 32221 112222222222221111 111222222111222233458999999999999999999973
No 100
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.9e-23 Score=258.92 Aligned_cols=266 Identities=14% Similarity=0.179 Sum_probs=213.2
Q ss_pred EcCCCCEEEEEEcCCcEEEEecCCcccceec-ccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccC---Ccccc-ccc
Q 000085 2004 ITHDKEIITGGHVDGSIKLLTSDGAKTLETA-SGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHR---AFTSR-TGT 2077 (2342)
Q Consensus 2004 fSpDGklLASGS~DGsIrVWDl~tgkll~tL-~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~t---g~~i~-t~~ 2077 (2342)
|+|+++.+++++ .|+ .+++.+..+ .+|.+.|+|++|+| ++++|+||+.||+|+|||+.+ +.... ...
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 577777776654 377 456788888 89999999999999 999999999999999999987 43222 223
Q ss_pred cCCCCCCccccccCCCCCceeecCCCc-cccccC-----CceEEec----------C--CCCCeEEEE--EecCCCEEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE-----GPIHVLR----------G--HHREILCCC--VSSDLGVVVS 2137 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~-----~~l~~L~----------G--Hs~~Vt~Va--fSPDg~lLaS 2137 (2342)
..+...+.++++++++..+++++.|+. ..|++. .....+. . +...+.++. +++++.++++
T Consensus 108 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (437)
T 3gre_A 108 YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187 (437)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence 357889999999999999999988875 446542 1122111 1 556777777 5578999999
Q ss_pred EeCCCcEEEEECCCCeEEEEEec--C--CcEEEEEecCCcEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEc-
Q 000085 2138 CSDSSDLLLHSIRRGRLIRRLVG--V--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEIS- 2211 (2342)
Q Consensus 2138 GS~DGtIrIWDLrTGklIrsL~g--h--~vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafS- 2211 (2342)
|+.||+|++||+++++.+..+.. | .+..++|+|+|.+++.+..+|.|++|++.. ..+......|...|++++|+
T Consensus 188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 267 (437)
T 3gre_A 188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ 267 (437)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence 99999999999999999999987 3 478999999999999999999999999974 44444444688899999665
Q ss_pred ---cCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC----
Q 000085 2212 ---LDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG---- 2284 (2342)
Q Consensus 2212 ---PDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg---- 2284 (2342)
+++.++++|+. ||.|++||+.+++++..+...
T Consensus 268 ~~s~~~~~l~s~~~-----------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (437)
T 3gre_A 268 FYGKNSVIVVGGSS-----------------------------------------KTFLTIWNFVKGHCQYAFINSDEQP 306 (437)
T ss_dssp TTCTTEEEEEEEST-----------------------------------------TEEEEEEETTTTEEEEEEESSSSCC
T ss_pred ccCCCccEEEEEcC-----------------------------------------CCcEEEEEcCCCcEEEEEEcCCCCC
Confidence 46788998862 778999999999988887721
Q ss_pred ---------------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2285 ---------------------EGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2285 ---------------------Hs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|...|++++|+ ++.+|++|+.||.|++||+...
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 307 SMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp CGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG
T ss_pred ccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc
Confidence 55668999999 7899999999999999997654
No 101
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.8e-23 Score=265.40 Aligned_cols=254 Identities=13% Similarity=0.055 Sum_probs=207.4
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
+.+++|+|||+++|+++.|++|+ |...+ +.+.+|...|.+++|+|+| .++++.+|+... ......
T Consensus 18 v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~---~~~~~~ 82 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQ---NGLLNS 82 (588)
T ss_dssp SCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS---SCSSTT
T ss_pred EEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCCC---ceEeec
Confidence 44599999999999999999999 64444 5558999999999999998 566666666443 222222
Q ss_pred CCCCCCccccccCCCCCceeecCCCc-cccccCCceEEecCCCC-----CeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKS-RRRRIEGPIHVLRGHHR-----EILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~~l~~L~GHs~-----~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
.+...|.+++|+|+|..+++++.++. ..|+....+..+. |.. .|.+++|||||++|++|+.||+|++||+.++
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~ 161 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN 161 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 44678999999999999999998876 5577666666667 765 4999999999999999999999999999988
Q ss_pred e-------EEEEEe----cC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee---eec-CCCCCCeEEEEEccCCC
Q 000085 2153 R-------LIRRLV----GV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA---RAK-LPLSGSIGCMEISLDGH 2215 (2342)
Q Consensus 2153 k-------lIrsL~----gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~---s~~-~~Hs~~ItsLafSPDGk 2215 (2342)
. .+.++. +| .+..++|+||| ++.+..++.+++|++.+.... ... ..|...|.+++|+ |+
T Consensus 162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~ 237 (588)
T 2j04_A 162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY 237 (588)
T ss_dssp TTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT
T ss_pred ccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC
Confidence 5 467774 33 37899999999 677788999999999875532 122 3588999999999 68
Q ss_pred EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEE-
Q 000085 2216 SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALAL- 2294 (2342)
Q Consensus 2216 ~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLaf- 2294 (2342)
.+++++ +++|++||+.+++...... +|.+.|.+++|
T Consensus 238 ~LASa~------------------------------------------~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~ 274 (588)
T 2j04_A 238 KVVLTC------------------------------------------PGYVHKIDLKNYSISSLKT-GSLENFHIIPLN 274 (588)
T ss_dssp EEEEEC------------------------------------------SSEEEEEETTTTEEEEEEC-SCCSCCCEEEET
T ss_pred EEEEEe------------------------------------------CCeEEEEECCCCeEEEEEc-CCCceEEEEEee
Confidence 898875 5789999999888744444 79999999999
Q ss_pred -ecCCCEEEEEeCCCcEEEEeCC
Q 000085 2295 -NKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2295 -SPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+||+..|++++.||+ ++|..+
T Consensus 275 ~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 275 HEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TCSSCEEEEECSSCEE-EEEESS
T ss_pred eCCCCCEEEEEcCCCC-EEEeec
Confidence 999999999999999 999964
No 102
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.90 E-value=8.9e-23 Score=248.40 Aligned_cols=254 Identities=11% Similarity=0.094 Sum_probs=192.1
Q ss_pred CC-CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1956 HG-KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH-DKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1956 ~G-k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp-DGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
++ ..+++++.|+.+++|+..++.... .+.. .++...+.+++|+| ++++|++|+.|+.|++||+.+ ..+..
T Consensus 84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~ 155 (383)
T 3ei3_B 84 THPTTVAVGSKGGDIILWDYDVQNKTS------FIQG-MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQV 155 (383)
T ss_dssp SCTTEEEEEEBTSCEEEEETTSTTCEE------EECC-CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEE
T ss_pred CCCCEEEEEcCCCeEEEEeCCCcccce------eeec-CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEE
Confidence 44 688999999999999976532211 1111 12344567799999 778999999999999999986 45555
Q ss_pred ccc---CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCC-CceeecCCCc-cccc
Q 000085 2034 ASG---HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS-TPANASADKS-RRRR 2108 (2342)
Q Consensus 2034 L~G---Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~-~Las~s~D~s-~~~~ 2108 (2342)
+.. |...|++++|+|++++|++|+.|++|++||+. +..... ...+...+.+++++|++. .+++++.|+. ..|+
T Consensus 156 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 233 (383)
T 3ei3_B 156 FAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFK-EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWD 233 (383)
T ss_dssp EECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEE-EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred EeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEE-eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEe
Confidence 544 45889999999999999999999999999994 333332 345778899999999999 7788887764 5566
Q ss_pred cCC-----ceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-------------------c
Q 000085 2109 IEG-----PIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-------------------A 2163 (2342)
Q Consensus 2109 i~~-----~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-------------------v 2163 (2342)
... ......+|...|++++|+| ++.++++++.||.|++||+++++.+..+.+|. .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 313 (383)
T 3ei3_B 234 LRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDL 313 (383)
T ss_dssp GGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSE
T ss_pred CCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCc
Confidence 542 2333337999999999999 99999999999999999999988776665432 1
Q ss_pred EEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCC-CCCCeEEEEEccCCCEEEEEe
Q 000085 2164 HAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLP-LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2164 ssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~-Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
..+++++||.+ .+..++.|++|++. +..+...... |...+.+++|+|+|++|++|+
T Consensus 314 ~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 314 IVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM 371 (383)
T ss_dssp EEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred eEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec
Confidence 23455555555 44578999999986 4444443322 567888889999999999886
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.9e-22 Score=251.15 Aligned_cols=274 Identities=9% Similarity=0.070 Sum_probs=215.5
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcc---cceecc----------------------------------------
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAK---TLETAS---------------------------------------- 2035 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgk---ll~tL~---------------------------------------- 2035 (2342)
+.+++|++||++|+++ .++.|++||+.+|+ .+..+.
T Consensus 7 ~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 7 LQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred EEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 4568999999977766 58899999999988 555544
Q ss_pred --------------cCCCCeEEEEecCCCCEE-EEEeCCCceEEEecc--CCccccccc-cCCCCCCccccccCCCCCce
Q 000085 2036 --------------GHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIH--RAFTSRTGT-IEPSSGMGTPGNSIGSSTPA 2097 (2342)
Q Consensus 2036 --------------GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~--tg~~i~t~~-~~~~~~V~svs~SpDG~~La 2097 (2342)
+|.+.|++++|+|++++| ++|+.||+|+|||+. ++.....+. ..+...+.+++|+|++..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI 165 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE
Confidence 344479999999999996 899999999999999 665554442 25567889999999999998
Q ss_pred eecCCCc-cccccC--C----ceEEecCCCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCCeEEEEE-ecCC--cE
Q 000085 2098 NASADKS-RRRRIE--G----PIHVLRGHHREILCCCVSSD---LGVVVSCSDSSDLLLHSIRRGRLIRRL-VGVD--AH 2164 (2342)
Q Consensus 2098 s~s~D~s-~~~~i~--~----~l~~L~GHs~~Vt~VafSPD---g~lLaSGS~DGtIrIWDLrTGklIrsL-~gh~--vs 2164 (2342)
++..++. ..|++. . +...+.+|...|++++|+|+ +.+|++|+.|++|++||+++++.+..+ .+|. +.
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~ 245 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVS 245 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEE
T ss_pred EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceE
Confidence 8877654 334432 1 33477899999999999999 999999999999999999999988874 4554 78
Q ss_pred EEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecC------------------------CCCCCeEEEEEccCCCEEEE
Q 000085 2165 AVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKL------------------------PLSGSIGCMEISLDGHSALI 2219 (2342)
Q Consensus 2165 sLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~------------------------~Hs~~ItsLafSPDGk~LaS 2219 (2342)
.++|+ +|.+++.+..++.|++|++. +..+..... .+...|.+++|+|+++++++
T Consensus 246 ~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 324 (450)
T 2vdu_B 246 SICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAF 324 (450)
T ss_dssp EEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEE
T ss_pred EEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEE
Confidence 99999 99999999999999999986 443333221 13457999999999999998
Q ss_pred EeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEEC--CCC---eEEEEEecCCCCCeEEEEE
Q 000085 2220 GVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDL--HTL---KVFHVLKLGEGQDITALAL 2294 (2342)
Q Consensus 2220 GS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL--~Tg---k~L~tL~lgHs~~ItsLaf 2294 (2342)
++. .|+.|+|||+ .++ +.+..+. .| ..|.+++|
T Consensus 325 ~~~----------------------------------------~d~~i~iw~~~~~~~~~l~~~~~~~-~~-~~v~~~~~ 362 (450)
T 2vdu_B 325 FVE----------------------------------------ATKCIIILEMSEKQKGDLALKQIIT-FP-YNVISLSA 362 (450)
T ss_dssp EET----------------------------------------TCSEEEEEEECSSSTTCEEEEEEEE-CS-SCEEEEEE
T ss_pred EEC----------------------------------------CCCeEEEEEeccCCCCceeeccEec-cC-CceEEEEe
Confidence 861 1678999999 555 7777787 66 78999999
Q ss_pred ecCCCEEEEEeC------CCcEEEEeCC
Q 000085 2295 NKDNTNLLVSTA------DKQLIVFTDP 2316 (2342)
Q Consensus 2295 SPDG~~LaSGSs------DGsIrVWDi~ 2316 (2342)
+|++.++++++. +..|.+|...
T Consensus 363 ~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 363 HNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp ETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred cCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 996533333332 5568888743
No 104
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.90 E-value=2.6e-21 Score=235.45 Aligned_cols=267 Identities=10% Similarity=0.112 Sum_probs=210.9
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEE-EEEEcCCcEEEEecCCcccceecccC
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEII-TGGHVDGSIKLLTSDGAKTLETASGH 2037 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklL-ASGS~DGsIrVWDl~tgkll~tL~GH 2037 (2342)
.+++++.|+.|++|+..++.. ...+..+ ..+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~------~~~~~~~----~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~ 73 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKV------TATIPVG----SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG 73 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEE------EEEEECS----SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred EEEEcCCCCEEEEEECCCCeE------EEEeecC----CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC
Confidence 467788899999999765311 1122222 235679999999966 67779999999999999998888766
Q ss_pred CCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe
Q 000085 2038 CAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL 2116 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L 2116 (2342)
. .|.+++|+|++++|+ +++.|++|++||+.++.. +..+
T Consensus 74 ~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~----------------------------------------~~~~ 112 (391)
T 1l0q_A 74 S-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV----------------------------------------AGTV 112 (391)
T ss_dssp S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----------------------------------------EEEE
T ss_pred C-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE----------------------------------------EEEE
Confidence 6 899999999999875 555779999999987532 1222
Q ss_pred cCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEE-EEEeCCCeEEEEEeCCce
Q 000085 2117 RGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIM-TWNKLQHTLSSFTLNGVL 2193 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~Il-VwdssdGsI~I~dlnG~~ 2193 (2342)
. +...+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+..+ ....++++++|..+ +.+..++.+++|++....
T Consensus 113 ~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 113 K-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred e-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 3 33468999999999977 78888999999999999999888764 47889999999876 566778999999997544
Q ss_pred eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC
Q 000085 2194 VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH 2273 (2342)
Q Consensus 2194 L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~ 2273 (2342)
.... ..+...+.+++|+|+|+++++++.+.. ++.|++||+.
T Consensus 192 ~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~--------------------------------------~~~v~~~d~~ 232 (391)
T 1l0q_A 192 VIDT-VKVEAAPSGIAVNPEGTKAYVTNVDKY--------------------------------------FNTVSMIDTG 232 (391)
T ss_dssp EEEE-EECSSEEEEEEECTTSSEEEEEEECSS--------------------------------------CCEEEEEETT
T ss_pred EEEE-EecCCCccceEECCCCCEEEEEecCcC--------------------------------------CCcEEEEECC
Confidence 3322 236678999999999999998862111 6889999999
Q ss_pred CCeEEEEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEeCCCC
Q 000085 2274 TLKVFHVLKLGEGQDITALALNKDNTNL-LVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2274 Tgk~L~tL~lgHs~~ItsLafSPDG~~L-aSGSsDGsIrVWDi~sL 2318 (2342)
+++.+..+. .|. .+.+++|+|++++| ++++.|+.|++||....
T Consensus 233 ~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 233 TNKITARIP-VGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp TTEEEEEEE-CCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCeEEEEEe-cCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 999998888 443 58999999999988 56688999999997654
No 105
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.90 E-value=2.2e-22 Score=247.10 Aligned_cols=263 Identities=11% Similarity=0.033 Sum_probs=191.9
Q ss_pred cCCCeEEecCCC-------ceEEEecCCCCCCCcccccc--cceeccccCcceeEEEEEcCCCCEEEEEE----------
Q 000085 1955 QHGKASASPASG-------TFLRMFKGPGGSGADEWHFP--RALAFASSGIRSSAVVSITHDKEIITGGH---------- 2015 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD-------~tIRVwdg~tgs~~~ew~~p--~sls~hs~gI~Svt~VafSpDGklLASGS---------- 2015 (2342)
++|+.+++|++| +.|++|+...........+. ..+.+ ..+-..+. +++++++.+++|.
T Consensus 24 ~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l-~~~~~~v~--s~~~~~~~~~~g~~~~~~~l~s~ 100 (365)
T 4h5i_A 24 NNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFAL-EDNDDSPT--AIDASKGIILVGCNENSTKITQG 100 (365)
T ss_dssp ETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEEC-CTTSCCCC--EEEEETTEEEEECCCCHHHHHHT
T ss_pred CCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEc-cCCCCceE--EEEeCCCEEEEEECCCccEEEEe
Confidence 567788887654 35999986542221111110 00111 11222333 3455667777664
Q ss_pred -cCCcEEEEecCCcccc----e-----ecccCCCCeEEEEecCCCCEEEEE--eCCCceEEEeccCCccccccccCCCCC
Q 000085 2016 -VDGSIKLLTSDGAKTL----E-----TASGHCAPVTCLALSSDSNFLVTG--SQDTTILLWRIHRAFTSRTGTIEPSSG 2083 (2342)
Q Consensus 2016 -~DGsIrVWDl~tgkll----~-----tL~GHt~~VtcLAfSPDG~~LaSG--S~DGTVrVWDl~tg~~i~t~~~~~~~~ 2083 (2342)
.|+.+|+|++.++... . ....+...|.+++|||||++++++ +.|++|+|||+.++...... .+...
T Consensus 101 ~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~--~~~~~ 178 (365)
T 4h5i_A 101 KGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI--ETRGE 178 (365)
T ss_dssp SCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE--ECSSC
T ss_pred cCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe--CCCCc
Confidence 5778999998764321 1 123455679999999999998754 47899999999998766554 35667
Q ss_pred CccccccCCCCCceeecCCCccccccC--Cc--eEEecCCCCCeEEEEEecCCCEEEEEeCCC----cEEEEECCCCeE-
Q 000085 2084 MGTPGNSIGSSTPANASADKSRRRRIE--GP--IHVLRGHHREILCCCVSSDLGVVVSCSDSS----DLLLHSIRRGRL- 2154 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s~~~~i~--~~--l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG----tIrIWDLrTGkl- 2154 (2342)
+..++|+|||+.++++..+....|... .. .....+|...|.+++|+|++.++++++.|+ ++++||+..+..
T Consensus 179 V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~ 258 (365)
T 4h5i_A 179 VKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS 258 (365)
T ss_dssp CCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE
T ss_pred eEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec
Confidence 999999999999999988877665542 22 234567899999999999999999999887 688899887654
Q ss_pred ---EEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2155 ---IRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2155 ---IrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
.+.+.+|. +.+++|+|||++++.+..++.|++|++. ++.+......|...|++|+|+|||++|++||.
T Consensus 259 ~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~ 332 (365)
T 4h5i_A 259 VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSA 332 (365)
T ss_dssp EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeC
Confidence 34455553 7899999999999999999999999997 45555555679999999999999999999983
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.5e-23 Score=269.03 Aligned_cols=302 Identities=7% Similarity=-0.013 Sum_probs=224.2
Q ss_pred eeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc
Q 000085 1952 FLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL 2031 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll 2031 (2342)
..-++|+.+++++.|+++| ++.. +..+..| -..+.+++|+|+| .++.+.+|+. +..
T Consensus 22 ~~SpDG~~iASas~D~TV~--d~~~---------~~~l~gh---~~~v~~V~FsPdg-------~~~~~~~~~~---~~~ 77 (588)
T 2j04_A 22 TWARDGTLYLTTFPDISIG--QPKY---------AKDINCN---SKNLFHVKEFPLE-------FENKLDFELA---QQN 77 (588)
T ss_dssp EECTTSCEEEECSSSEEEE--EECC---------CSCCSSB---GGGTEEEEEECCC-------CCCTTTTSCC---CSS
T ss_pred EECCCCCEEEEEcCCceee--cccc---------cceecCC---CccEEEEEECCCC-------CcceEEEEeC---CCc
Confidence 3346899999999999999 5443 1223334 4455669999999 4666555554 333
Q ss_pred eecc-cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCC----CCCCccccccCCCCCceeecCCCc-c
Q 000085 2032 ETAS-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEP----SSGMGTPGNSIGSSTPANASADKS-R 2105 (2342)
Q Consensus 2032 ~tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~----~~~V~svs~SpDG~~Las~s~D~s-~ 2105 (2342)
..+. +|.+.|++++|||||++|++++.||+|+|||..+ ...... .+ ...+.+++|||||+.+++++.|+. .
T Consensus 78 ~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 78 GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 3333 5688999999999999999999999999999644 222222 11 225889999999999999998876 4
Q ss_pred ccccCCc---------eEEe----cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---EEEEEe-cCC--cEEE
Q 000085 2106 RRRIEGP---------IHVL----RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR---LIRRLV-GVD--AHAV 2166 (2342)
Q Consensus 2106 ~~~i~~~---------l~~L----~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk---lIrsL~-gh~--vssL 2166 (2342)
.|+.... +..+ .+|.+.|.+++|+|+| +++++.|++|++||+.++. ..+++. +|. +..+
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv 232 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDL 232 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEE
Confidence 5766432 4565 6788999999999999 8889999999999998877 345664 554 8889
Q ss_pred EEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEE--ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc
Q 000085 2167 SLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEI--SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT 2244 (2342)
Q Consensus 2167 SfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLaf--SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ 2244 (2342)
+|+ |..++.+. ++.|++|++.+..+.....+|...|+.++| +||+..+++++.+|. ++|.+. .
T Consensus 233 aFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-------klw~~d-----~ 297 (588)
T 2j04_A 233 KIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-------KVLLED-----E 297 (588)
T ss_dssp EEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-------EEEESS-----S
T ss_pred EEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-------EEEeec-----c
Confidence 999 57777665 699999999987775556579999999999 999999998876554 345444 2
Q ss_pred cccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2245 EDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2245 iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs 2306 (2342)
+.+.++...... .|+++++|+..... +..+. +...|.+++|||||+.+|+++.
T Consensus 298 ~~~spd~~l~a~------~d~~v~lW~~~g~~-l~~~~--~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 298 LHVTADNIIAPY------LEKKFKKWSTIWNE-FNNYE--TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEEECCCSSHHH------HHHHHHHTTTTTTS-SSSSC--CEEEEEEEEECTTSSEEEEEEE
T ss_pred EEECCCceEEEE------cCCEEEEEECCCCc-eeeec--cceEEEEEEECCCCCEEEEEEe
Confidence 335555443332 28899999985544 33333 3567999999999999998863
No 107
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.90 E-value=1.2e-21 Score=229.77 Aligned_cols=256 Identities=12% Similarity=0.092 Sum_probs=203.0
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
+..|+++ .|++|++|+..++... ..+..+ .+...+.+++|+|++++|++|+.||+|++||+.+++.+..+.+
T Consensus 36 ~~~lAvg-~D~tV~iWd~~tg~~~------~~~~~~-~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~ 107 (318)
T 4ggc_A 36 GNVLAVA-LDNSVYLWSASSGDIL------QLLQME-QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 107 (318)
T ss_dssp TSEEEEE-ETTEEEEEETTTCCEE------EEEECC-STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEE-eCCEEEEEECCCCCEE------EEEEec-CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC
Confidence 3445554 5889999997764221 112222 2344577899999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccccC-----
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE----- 2110 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~----- 2110 (2342)
|...+.++.+ ++..+++|+.++.+++|+.............+...+..+.+++++..++++..|+. ..|+..
T Consensus 108 h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 185 (318)
T 4ggc_A 108 HSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185 (318)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred ccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence 9999887766 56899999999999999998865544445677788889999999999999988875 446553
Q ss_pred -CceEEecCCCCCeEEEEEecCCCE---EEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEe--CCCe
Q 000085 2111 -GPIHVLRGHHREILCCCVSSDLGV---VVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNK--LQHT 2183 (2342)
Q Consensus 2111 -~~l~~L~GHs~~Vt~VafSPDg~l---LaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwds--sdGs 2183 (2342)
........|.+.|.++++++++.. +++++.+++|++||.+++........+ .+..+++++++..++... .++.
T Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~ 265 (318)
T 4ggc_A 186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 265 (318)
T ss_dssp SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCE
Confidence 234566778899999999987653 346788999999999998887776654 478889999998777654 6899
Q ss_pred EEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2184 LSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2184 I~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
|++|++..........+|.+.|++++|+|||++|++|+.
T Consensus 266 i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 266 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 999999754444455679999999999999999999973
No 108
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.90 E-value=8.5e-23 Score=244.82 Aligned_cols=224 Identities=12% Similarity=0.069 Sum_probs=170.8
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC--CCCEEEEEEcCCcEEEEecCCcc--c
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH--DKEIITGGHVDGSIKLLTSDGAK--T 2030 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp--DGklLASGS~DGsIrVWDl~tgk--l 2030 (2342)
++|+.+++++.|+++++|+..++. ......+..|. ..+.+++|++ ++++|++|+.|++|+|||+.+++ .
T Consensus 23 ~~g~~lasgs~D~~v~lwd~~~~~----~~~~~~l~gH~---~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~ 95 (316)
T 3bg1_A 23 YYGTRLATCSSDRSVKIFDVRNGG----QILIADLRGHE---GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK 95 (316)
T ss_dssp GGGCEEEEEETTTEEEEEEEETTE----EEEEEEEECCS---SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCE
T ss_pred CCCCEEEEEeCCCeEEEEEecCCC----cEEEEEEcCCC---ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceE
Confidence 467889999999999999865421 01112233444 4466799986 48999999999999999999874 5
Q ss_pred ceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2031 LETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
...+.+|...|++++|+|+ +.+|++|+.|++|++||+.......
T Consensus 96 ~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~---------------------------------- 141 (316)
T 3bg1_A 96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE---------------------------------- 141 (316)
T ss_dssp EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE----------------------------------
T ss_pred EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc----------------------------------
Confidence 5678899999999999998 8899999999999999998642110
Q ss_pred cCCceEEecCCCCCeEEEEEecC-----------------CCEEEEEeCCCcEEEEECCCC---eEEEEEecCC--cEEE
Q 000085 2109 IEGPIHVLRGHHREILCCCVSSD-----------------LGVVVSCSDSSDLLLHSIRRG---RLIRRLVGVD--AHAV 2166 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSPD-----------------g~lLaSGS~DGtIrIWDLrTG---klIrsL~gh~--vssL 2166 (2342)
....+.+|...|.+++|+|+ +.++++|+.|++|++||++++ +.+..+.+|. +..+
T Consensus 142 ---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v 218 (316)
T 3bg1_A 142 ---VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDV 218 (316)
T ss_dssp ---ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEE
T ss_pred ---eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEE
Confidence 01122345555555555554 578999999999999999765 4667777775 7899
Q ss_pred EEecCC----cEEEEEeCCCeEEEEEeCCc----eeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2167 SLSSEG----VIMTWNKLQHTLSSFTLNGV----LVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2167 SfSpDG----~IlVwdssdGsI~I~dlnG~----~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
+|+|++ .+++.+..++.|++|++... ........|...|++++|+|+|++|++|+.
T Consensus 219 ~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 219 AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG 282 (316)
T ss_dssp ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred EecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence 999987 78999999999999998641 111112238899999999999999999973
No 109
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.90 E-value=3.7e-21 Score=237.35 Aligned_cols=289 Identities=11% Similarity=0.086 Sum_probs=220.5
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
+++..+++++.++.+++|+..++....... .... ..+...+.+++|+++++++++++.|+.|++||+.+++.+..+
T Consensus 132 ~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~---~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~ 207 (433)
T 3bws_A 132 DNTRLAIPLLEDEGMDVLDINSGQTVRLSP-PEKY---KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV 207 (433)
T ss_dssp SSSEEEEEBTTSSSEEEEETTTCCEEEECC-CHHH---HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEECCCCeEeeecC-cccc---cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE
Confidence 356677788888899999976632211100 0011 223345677999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2035 SGHCAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
..|...+.+++|+|++++++ +++.|++|++||+.++...
T Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~---------------------------------------- 247 (433)
T 3bws_A 208 DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI---------------------------------------- 247 (433)
T ss_dssp ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE----------------------------------------
T ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE----------------------------------------
Confidence 99999999999999999885 5558999999999875321
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEe--------CCCcEEEEECCCCeEEEEEec-CCcEEEEEecCCcE-EEEEeCCCe
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCS--------DSSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVI-MTWNKLQHT 2183 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS--------~DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~I-lVwdssdGs 2183 (2342)
..+.. ...+.+++|+|+++.+++++ .||.|++||+++++.+..+.. .....++++|+|.. ++.+..++.
T Consensus 248 ~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 326 (433)
T 3bws_A 248 RKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSK 326 (433)
T ss_dssp EECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTE
T ss_pred EEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCE
Confidence 12222 24589999999999999888 589999999999988877643 24678999999974 455688899
Q ss_pred EEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCC
Q 000085 2184 LSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2184 I~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
+.+|++.+...... ..+...+.+++|+|+|+++++++.+.... .......+..
T Consensus 327 v~v~d~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~--------------------------~~~~~~~g~~ 379 (433)
T 3bws_A 327 IEVYDLKEKKVQKS-IPVFDKPNTIALSPDGKYLYVSCRGPNHP--------------------------TEGYLKKGLV 379 (433)
T ss_dssp EEEEETTTTEEEEE-EECSSSEEEEEECTTSSEEEEEECCCCCT--------------------------TTCTTSCCSS
T ss_pred EEEEECCCCcEEEE-ecCCCCCCeEEEcCCCCEEEEEecCCCcc--------------------------cccccccccc
Confidence 99999975443322 23778899999999999999886432200 0001111235
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA-DKQLIVFTDPA 2317 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs-DGsIrVWDi~s 2317 (2342)
||.|++||+.+++.+..+. . ...+.+++|+|+|++|++++. |+.|++|+..+
T Consensus 380 dg~v~~~d~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 380 LGKVYVIDTTTDTVKEFWE-A-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCEEEEEETTTTEEEEEEE-C-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ceEEEEEECCCCcEEEEec-C-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 8999999999999998887 3 557999999999999998875 99999999653
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.1e-22 Score=245.53 Aligned_cols=236 Identities=10% Similarity=0.069 Sum_probs=185.9
Q ss_pred EcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCC
Q 000085 2004 ITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSG 2083 (2342)
Q Consensus 2004 fSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~ 2083 (2342)
+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++|+.|++|++|+.........
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~-------- 110 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILD-------- 110 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEE--------
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEee--------
Confidence 45678899999999999999999999888776 567889999988 99999999999999875211000
Q ss_pred CccccccCCCCCceeecCCCccccccCCceEE-ecCCCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 000085 2084 MGTPGNSIGSSTPANASADKSRRRRIEGPIHV-LRGHHREILCCCVSS--DLGVVVSCSDSSDLLLHSIRRGRLIRRLVG 2160 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~-L~GHs~~Vt~VafSP--Dg~lLaSGS~DGtIrIWDLrTGklIrsL~g 2160 (2342)
......+.. ..+|.+.|.+++|+| ++.++++|+.||+|++||+++++.+.....
T Consensus 111 -----------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 167 (343)
T 3lrv_A 111 -----------------------SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA 167 (343)
T ss_dssp -----------------------TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred -----------------------cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence 001111222 236788999999999 999999999999999999999999777644
Q ss_pred C---CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee-eecCC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccc
Q 000085 2161 V---DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA-RAKLP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQ 2235 (2342)
Q Consensus 2161 h---~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~-s~~~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw 2235 (2342)
+ .+..++|+|+|.+++.+..++.|++|++...... ..... |...|++++|+|+|.+|++|+
T Consensus 168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-------------- 233 (343)
T 3lrv_A 168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-------------- 233 (343)
T ss_dssp CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--------------
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--------------
Confidence 3 3789999999999999999999999999744332 33344 999999999999999999997
Q ss_pred ccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec--CCCCCe--EEEEEecCCCEEEEEeC-CCcE
Q 000085 2236 GLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL--GEGQDI--TALALNKDNTNLLVSTA-DKQL 2310 (2342)
Q Consensus 2236 ~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l--gHs~~I--tsLafSPDG~~LaSGSs-DGsI 2310 (2342)
|+.|++||+++++.+..+.. .|...+ .+++|+|+|++|++++. |+.|
T Consensus 234 ----------------------------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i 285 (343)
T 3lrv_A 234 ----------------------------DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSL 285 (343)
T ss_dssp ----------------------------SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEE
T ss_pred ----------------------------CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcE
Confidence 34799999998876544331 133334 36999999999999998 9999
Q ss_pred EEEeCCC
Q 000085 2311 IVFTDPA 2317 (2342)
Q Consensus 2311 rVWDi~s 2317 (2342)
+||+...
T Consensus 286 ~v~~~~~ 292 (343)
T 3lrv_A 286 TIYKFDK 292 (343)
T ss_dssp EEEEECT
T ss_pred EEEEEcc
Confidence 9999643
No 111
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.5e-22 Score=244.54 Aligned_cols=261 Identities=13% Similarity=0.058 Sum_probs=195.0
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecC-------
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSD------- 2026 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~------- 2026 (2342)
+.++..+++++.|++|++|+..++...... . . ..+.++.++|+ +++|+.|++|++|+..
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~------~--~---~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~ 110 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTI------T--T---PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILD 110 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEE------E--E---ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEE------e--c---CCceeeeeCCc---eEEecCCCeEEEEEccCceEEee
Confidence 456788999999999999997663222111 1 1 22334677887 8999999999999765
Q ss_pred --Ccccceecc-cCCCCeEEEEecC--CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecC
Q 000085 2027 --GAKTLETAS-GHCAPVTCLALSS--DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASA 2101 (2342)
Q Consensus 2027 --tgkll~tL~-GHt~~VtcLAfSP--DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~ 2101 (2342)
+++.+..+. +|.+.|.+++|+| ++++|++|+.||+|++||+.++..
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~----------------------------- 161 (343)
T 3lrv_A 111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ----------------------------- 161 (343)
T ss_dssp TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-----------------------------
T ss_pred cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-----------------------------
Confidence 444444443 6789999999999 999999999999999999987532
Q ss_pred CCccccccCCceEEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE-EEEec-CC--cEEEEEecCCcEEE
Q 000085 2102 DKSRRRRIEGPIHVL-RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLI-RRLVG-VD--AHAVSLSSEGVIMT 2176 (2342)
Q Consensus 2102 D~s~~~~i~~~l~~L-~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklI-rsL~g-h~--vssLSfSpDG~IlV 2176 (2342)
.... ..|...|++++|+|++.++++|+.||+|++||+++++.+ ..+.. |. +..++|+|+|.+++
T Consensus 162 -----------~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 162 -----------YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMV 230 (343)
T ss_dssp -----------EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEE
T ss_pred -----------EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEE
Confidence 1112 235567999999999999999999999999999999887 77776 54 78999999999999
Q ss_pred EEeCCCeEEEEEeCCceeeeecCC---CCCCe--EEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccccc
Q 000085 2177 WNKLQHTLSSFTLNGVLVARAKLP---LSGSI--GCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLAS 2251 (2342)
Q Consensus 2177 wdssdGsI~I~dlnG~~L~s~~~~---Hs~~I--tsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~ 2251 (2342)
.+. ++.|++|++........... |...+ .+++|+|+|++|++|+.
T Consensus 231 s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~----------------------------- 280 (343)
T 3lrv_A 231 VEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN----------------------------- 280 (343)
T ss_dssp EEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET-----------------------------
T ss_pred EEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC-----------------------------
Confidence 888 45999999974322111111 22333 46999999999999862
Q ss_pred ccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec---CCCEEEEEeCCCcEEEEe
Q 000085 2252 DQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK---DNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2252 ~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP---DG~~LaSGSsDGsIrVWD 2314 (2342)
.|+.|+||++.+....... .++..++|++ +.+.|++++.||.+.++-
T Consensus 281 -----------~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 281 -----------ESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp -----------TTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred -----------CCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 1567999998665432222 4677888998 889999999999999886
No 112
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.7e-21 Score=233.49 Aligned_cols=224 Identities=14% Similarity=0.131 Sum_probs=181.2
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC--CCEEEEEEcCCcEEEEecCCcc--c
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD--KEIITGGHVDGSIKLLTSDGAK--T 2030 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD--GklLASGS~DGsIrVWDl~tgk--l 2030 (2342)
+++..+++++.|+.+++|+.... .......+..| ...+.+++|+++ +++|++|+.||.|++||+.+++ .
T Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 93 (379)
T 3jrp_A 21 YYGKRLATCSSDKTIKIFEVEGE----THKLIDTLTGH---EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ 93 (379)
T ss_dssp SSSSEEEEEETTSCEEEEEEETT----EEEEEEEECCC---SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCCCEEEEEECCCcEEEEecCCC----cceeeeEecCC---CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeE
Confidence 45778899999999999986421 11222233333 345677999987 8999999999999999999987 7
Q ss_pred ceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2031 LETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
+..+.+|...|++++|+|+ +.+|++|+.|++|++||+.....
T Consensus 94 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------------------------------------ 137 (379)
T 3jrp_A 94 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------------------------------------ 137 (379)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC------------------------------------
T ss_pred eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc------------------------------------
Confidence 7788899999999999999 99999999999999999987421
Q ss_pred cCCceEEecCCCCCeEEEEEec-------------CCCEEEEEeCCCcEEEEECCCCe----EEEEEecCC--cEEEEEe
Q 000085 2109 IEGPIHVLRGHHREILCCCVSS-------------DLGVVVSCSDSSDLLLHSIRRGR----LIRRLVGVD--AHAVSLS 2169 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSP-------------Dg~lLaSGS~DGtIrIWDLrTGk----lIrsL~gh~--vssLSfS 2169 (2342)
.....+.+|...|++++|+| ++.++++|+.||.|++||++++. .+..+.+|. +..++|+
T Consensus 138 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~s 215 (379)
T 3jrp_A 138 --TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 215 (379)
T ss_dssp --CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred --eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEEC
Confidence 12234678999999999999 69999999999999999998764 455666664 7899999
Q ss_pred cC---CcEEEEEeCCCeEEEEEeCCc-----eeeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2170 SE---GVIMTWNKLQHTLSSFTLNGV-----LVARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2170 pD---G~IlVwdssdGsI~I~dlnG~-----~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
|+ +.+++.+..++.+++|++... ........|...|++++|+|+|++|++++.+
T Consensus 216 p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 277 (379)
T 3jrp_A 216 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 277 (379)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS
T ss_pred CCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC
Confidence 99 899999999999999999753 1122222388999999999999999999743
No 113
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.89 E-value=4.2e-21 Score=238.60 Aligned_cols=252 Identities=13% Similarity=0.208 Sum_probs=201.1
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec--ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA--SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL--~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
++|+||++ ++||+|. |++|+|||..+|++.+.+ .+|.+.|+||+|+|+|++|++|+.||+|+|||+.++.
T Consensus 109 ~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~------ 180 (420)
T 4gga_A 109 NLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK------ 180 (420)
T ss_dssp BCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------
T ss_pred eeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc------
Confidence 45999975 5888876 999999999999987765 4678899999999999999999999999999998752
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG-RLIR 2156 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG-klIr 2156 (2342)
.+..+.+|...|.++++ ++..+++|+.|+.+++||.+.. ..+.
T Consensus 181 ----------------------------------~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~ 224 (420)
T 4gga_A 181 ----------------------------------RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA 224 (420)
T ss_dssp ----------------------------------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ----------------------------------EEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeE
Confidence 34567889999998877 4689999999999999999864 5667
Q ss_pred EEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCce----eeeecCCCCCCeEEEEEccCCC-EEEEEeCCCCCCCC
Q 000085 2157 RLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL----VARAKLPLSGSIGCMEISLDGH-SALIGVNSSSTNNG 2229 (2342)
Q Consensus 2157 sL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~----L~s~~~~Hs~~ItsLafSPDGk-~LaSGS~DGs~d~~ 2229 (2342)
.+.+|. +..+.++++|..++.+..++.+.+|+..... .......|...|.+++|+|++. .+++++ |+
T Consensus 225 ~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~--gs---- 298 (420)
T 4gga_A 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG--GT---- 298 (420)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE--CT----
T ss_pred EecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe--ec----
Confidence 777764 6788999999999999999999999985321 1122334889999999999765 445543 11
Q ss_pred CcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe--CC
Q 000085 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST--AD 2307 (2342)
Q Consensus 2230 i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS--sD 2307 (2342)
.|++|++||+.+++++..+. +...+.++.|++++..|++++ .|
T Consensus 299 ---------------------------------~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d 343 (420)
T 4gga_A 299 ---------------------------------SDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQ 343 (420)
T ss_dssp ---------------------------------TTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEECTTT
T ss_pred ---------------------------------CCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEecCC
Confidence 38999999999999998887 446799999999999998875 79
Q ss_pred CcEEEEeCCCCChh-h----hhhhhhccccCCCc
Q 000085 2308 KQLIVFTDPALSLK-V----VDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2308 GsIrVWDi~sLs~k-~----LdQLLk~GWegDGL 2336 (2342)
|.|+|||.++.... . ........|.+||-
T Consensus 344 ~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~ 377 (420)
T 4gga_A 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 377 (420)
T ss_dssp CCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 99999998765411 0 11233445777763
No 114
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.89 E-value=7.2e-22 Score=243.83 Aligned_cols=265 Identities=11% Similarity=0.075 Sum_probs=201.5
Q ss_pred cCCCeEEecCCCceEEEecCCCCCC-----CcccccccceeccccC---------cceeEEEEEcCCC--CEEEEEEcCC
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSG-----ADEWHFPRALAFASSG---------IRSSAVVSITHDK--EIITGGHVDG 2018 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~-----~~ew~~p~sls~hs~g---------I~Svt~VafSpDG--klLASGS~DG 2018 (2342)
++|..+++++.|+.|++|+..++.. ...+.....+..|... ...+.+++|+|++ .+|++|+.|+
T Consensus 38 ~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~ 117 (447)
T 3dw8_B 38 HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDK 117 (447)
T ss_dssp SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSS
T ss_pred CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCC
Confidence 3577889999999999999765321 1112222233333300 0346679999998 7999999999
Q ss_pred cEEEEecCCcccc---------------------------------------ee-cccCCCCeEEEEecCCCCEEEEEeC
Q 000085 2019 SIKLLTSDGAKTL---------------------------------------ET-ASGHCAPVTCLALSSDSNFLVTGSQ 2058 (2342)
Q Consensus 2019 sIrVWDl~tgkll---------------------------------------~t-L~GHt~~VtcLAfSPDG~~LaSGS~ 2058 (2342)
+|++||+.+++.. .. ..+|...|++++|+|++++|++| .
T Consensus 118 ~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~ 196 (447)
T 3dw8_B 118 TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-D 196 (447)
T ss_dssp CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-C
T ss_pred eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-C
Confidence 9999998764431 12 46899999999999999999999 7
Q ss_pred CCceEEEeccCCc-cccc------cccCCCCCCccccccCCC-CCceeecCCCc-cccccC--Cc----eEEecCCCC--
Q 000085 2059 DTTILLWRIHRAF-TSRT------GTIEPSSGMGTPGNSIGS-STPANASADKS-RRRRIE--GP----IHVLRGHHR-- 2121 (2342)
Q Consensus 2059 DGTVrVWDl~tg~-~i~t------~~~~~~~~V~svs~SpDG-~~Las~s~D~s-~~~~i~--~~----l~~L~GHs~-- 2121 (2342)
|++|++||+.+.. .... ....+...+.+++|+|++ ..+++++.++. ..|+.. .. ...+.+|..
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 276 (447)
T 3dw8_B 197 DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPS 276 (447)
T ss_dssp SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC----
T ss_pred CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcc
Confidence 9999999998432 2221 134677889999999998 88888888875 456653 22 578888876
Q ss_pred ----------CeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeEEEEEecCCc-----------------EEEEEecCCc
Q 000085 2122 ----------EILCCCVSSDLGVVVSCSDSSDLLLHSIRR-GRLIRRLVGVDA-----------------HAVSLSSEGV 2173 (2342)
Q Consensus 2122 ----------~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT-GklIrsL~gh~v-----------------ssLSfSpDG~ 2173 (2342)
.|++++|+|++.++++++. |+|++||+++ ++.+..+.+|.. ..++|+|+|.
T Consensus 277 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~ 355 (447)
T 3dw8_B 277 NRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS 355 (447)
T ss_dssp -CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS
T ss_pred ccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCC
Confidence 9999999999999999999 9999999997 888888887751 2389999999
Q ss_pred EEEEEeCCCeEEEEEeCCceeeee--------------------------------cCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2174 IMTWNKLQHTLSSFTLNGVLVARA--------------------------------KLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2174 IlVwdssdGsI~I~dlnG~~L~s~--------------------------------~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+++.+..++.|++|++........ ...+...|.+++|+|+|.+|++|+
T Consensus 356 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~ 435 (447)
T 3dw8_B 356 VVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVAT 435 (447)
T ss_dssp EEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEEC
T ss_pred EEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEe
Confidence 999999999999999874433211 112456789999999999999886
No 115
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.89 E-value=8.5e-22 Score=245.59 Aligned_cols=278 Identities=17% Similarity=0.221 Sum_probs=207.1
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
++..+++++.|+.|++|+..++. ....+..|.. .+.+++| ++++|++|+.||+|++||+.+++.+..+.
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~------~~~~~~~h~~---~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 210 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLE------CKRILTGHTG---SVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI 210 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCC------EEEEECCCSS---CEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCe------EEEEEcCCCC---cEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence 67788999999999999976532 1222333443 3455666 88999999999999999999999999999
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc--ccccCCCCCCccccccCCCCCceeecCCCc-ccccc--C
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR--TGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--E 2110 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~--t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~ 2110 (2342)
+|.+.|++++|+ +.++++|+.||+|++||+.++.... .....+...+.++.+ ++..+++++.++. ..|+. .
T Consensus 211 ~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~ 286 (435)
T 1p22_A 211 HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC 286 (435)
T ss_dssp CCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC
T ss_pred CCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC
Confidence 999999999997 4699999999999999999875543 224566677777777 7888888888765 45665 4
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
..+..+.+|...|.+++| ++.++++|+.||+|++||+++++++..+.+|.....++..+|..++.+..+|.|++|++.
T Consensus 287 ~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 287 EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp CEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHH
T ss_pred cEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECC
Confidence 567889999999999999 478999999999999999999999999998875555555589999999999999999985
Q ss_pred Cce---------eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCcc
Q 000085 2191 GVL---------VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFD 2261 (2342)
Q Consensus 2191 G~~---------L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ia 2261 (2342)
... .......|.+.|++++| ++.++++|+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~--------------------------------------- 403 (435)
T 1p22_A 365 AALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH--------------------------------------- 403 (435)
T ss_dssp HHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS---------------------------------------
T ss_pred CCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC---------------------------------------
Confidence 322 33334569999999999 7888887752
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe
Q 000085 2262 FPSPSICFLDLHTLKVFHVLKLGEGQDITALALN 2295 (2342)
Q Consensus 2262 s~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS 2295 (2342)
||.|++||+.+........ ...+..++.|.
T Consensus 404 --Dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~ 433 (435)
T 1p22_A 404 --DDTILIWDFLNDPAAQAEP--PRSPSRTYTYI 433 (435)
T ss_dssp --SSEEEEEC------------------------
T ss_pred --CCEEEEEECCCCCCcccCC--CCCCccceeee
Confidence 7889999998876544433 23344555443
No 116
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.89 E-value=8.6e-22 Score=233.99 Aligned_cols=257 Identities=8% Similarity=-0.038 Sum_probs=207.1
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEec-CCcccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTS-DGAKTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl-~tgkll~ 2032 (2342)
+++..+++++.|+.+++|+..++.... ....... +...+.+++|+|+++ +|++|+.||.|++||+ .+++. .
T Consensus 21 ~~~~~l~~~~~d~~v~iw~~~~~~~~~---~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~ 93 (342)
T 1yfq_A 21 PSKSLLLITSWDGSLTVYKFDIQAKNV---DLLQSLR---YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-Q 93 (342)
T ss_dssp GGGTEEEEEETTSEEEEEEEETTTTEE---EEEEEEE---CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-E
T ss_pred CCCCEEEEEcCCCeEEEEEeCCCCccc---cceeeee---cCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-E
Confidence 456778899999999999866522100 0112222 334567799999999 9999999999999999 77654 7
Q ss_pred eccc--CCCCeEEEEecCCCCEEEEEeCCCceEEEeccC---------CccccccccCCCCCCccccccCCCCCceeecC
Q 000085 2033 TASG--HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR---------AFTSRTGTIEPSSGMGTPGNSIGSSTPANASA 2101 (2342)
Q Consensus 2033 tL~G--Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t---------g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~ 2101 (2342)
.+.+ |...|++++|+| +++|++|+.|++|++||+.+ +....... +...+.++.+++++ ++++..
T Consensus 94 ~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~--l~~~~~ 168 (342)
T 1yfq_A 94 ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSR--LIVGMN 168 (342)
T ss_dssp ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSE--EEEEES
T ss_pred eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecCCc--EEEEeC
Confidence 7788 999999999999 99999999999999999987 55444432 67788899999888 666666
Q ss_pred CC-ccccccCC-----ceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC------eEEEEEecC-------
Q 000085 2102 DK-SRRRRIEG-----PIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRG------RLIRRLVGV------- 2161 (2342)
Q Consensus 2102 D~-s~~~~i~~-----~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTG------klIrsL~gh------- 2161 (2342)
++ +..|+... .......|...|++++|+| ++.++++|+.||.|++||+..+ +.+..+..|
T Consensus 169 d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
T 1yfq_A 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248 (342)
T ss_dssp TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC
T ss_pred CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccc
Confidence 54 45576654 3345567889999999999 9999999999999999999887 777788776
Q ss_pred ----CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCC-CCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2162 ----DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPL-SGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2162 ----~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~H-s~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
.+..++|+|+|.+++.+..+|.|++|++...........| ...|++++ |+|++|++|+.|+.
T Consensus 249 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 6789999999999999999999999999854444444556 99999999 99999999987665
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.88 E-value=5.8e-21 Score=232.81 Aligned_cols=242 Identities=13% Similarity=0.082 Sum_probs=179.7
Q ss_pred EEEEEEcCCcEEEEecCCc---ccceecccCCCC-------------------------eEEEEecCC----CCEEEEEe
Q 000085 2010 IITGGHVDGSIKLLTSDGA---KTLETASGHCAP-------------------------VTCLALSSD----SNFLVTGS 2057 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tg---kll~tL~GHt~~-------------------------VtcLAfSPD----G~~LaSGS 2057 (2342)
.|++++ ..+|++|+..++ +.+.++.+|..+ |..++++|| ++++++++
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 345554 678999999988 677788777754 555666677 78888877
Q ss_pred CCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec---CCCE
Q 000085 2058 QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS---DLGV 2134 (2342)
Q Consensus 2058 ~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP---Dg~l 2134 (2342)
.+ +++|++.+++.+.+...++...+..+.++++|+. +..+.+|...++.++|++ ++.+
T Consensus 135 ~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~-----------------~~s~~~~~~~v~~l~fs~~~g~~~~ 195 (356)
T 2w18_A 135 NI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGG-----------------KENQFLMPPEETILTFAEVQGMQEA 195 (356)
T ss_dssp EE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCE-----------------EEEEEECCCSSCEEEEEEEETSTTE
T ss_pred Ce--EEEEecCCCcEEEecccCCCCcEEEEEECCCCce-----------------eeeeccCCCceeeEEeeccCCCCce
Confidence 44 7889987765554434456666666777666644 345678999999999999 7899
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecCC-----cEEEEEecCCcEEEE------------EeCCCeEEEEEeCCceeeee
Q 000085 2135 VVSCSDSSDLLLHSIRRGRLIRRLVGVD-----AHAVSLSSEGVIMTW------------NKLQHTLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2135 LaSGS~DGtIrIWDLrTGklIrsL~gh~-----vssLSfSpDG~IlVw------------dssdGsI~I~dlnG~~L~s~ 2197 (2342)
++||+.|++|+|||+.+|++++++.+|. +..++|+|||.+++. +..++++++|+.........
T Consensus 196 LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v 275 (356)
T 2w18_A 196 LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV 275 (356)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEE
T ss_pred EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE
Confidence 9999999999999999999999998643 457789999988743 45667899999874433221
Q ss_pred c-----CCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEEC
Q 000085 2198 K-----LPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDL 2272 (2342)
Q Consensus 2198 ~-----~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL 2272 (2342)
. .+|...+.+..++ +.++++|+. |++|+|||+
T Consensus 276 ~~~~~p~Gh~~~~lsg~~s--g~~lASgS~-----------------------------------------DgTIkIWDl 312 (356)
T 2w18_A 276 MLYCLPPGQAGRFLEGDVK--DHCAAAILT-----------------------------------------SGTIAIWDL 312 (356)
T ss_dssp EEECCCTTCCCCEEEEEEE--TTEEEEEET-----------------------------------------TSCEEEEET
T ss_pred EEeeccCCCcceeEccccC--CCEEEEEcC-----------------------------------------CCcEEEEEC
Confidence 1 2355554444333 677777762 778999999
Q ss_pred CCCeEEEEEecCCCCCeE-EEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2273 HTLKVFHVLKLGEGQDIT-ALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2273 ~Tgk~L~tL~lgHs~~It-sLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
.++++++++. +|...+. +++|||||++|++|+.|++|+|||.
T Consensus 313 ~tGk~l~tL~-gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 313 LLGQCTALLP-PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTCSEEEEEC-CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCcEEEEec-CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999998 7776554 6899999999999999999999984
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.88 E-value=3e-21 Score=235.59 Aligned_cols=231 Identities=8% Similarity=0.094 Sum_probs=179.7
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
..+.+++|+|||++|++|+.|+ ++||++.+++...... ...+..+++.++++.+ ++|+.|++|++||+.++..
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~--- 93 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD--- 93 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE---
T ss_pred CceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE---
Confidence 3456699999999999998665 7899998876655433 2358888999888877 5688899999999987532
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eE
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG-RL 2154 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG-kl 2154 (2342)
+..+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.
T Consensus 94 -------------------------------------~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~ 132 (355)
T 3vu4_A 94 -------------------------------------VSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKR 132 (355)
T ss_dssp -------------------------------------EEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCB
T ss_pred -------------------------------------EEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCcee
Confidence 22233 56689999998764 3333 4789999999988 66
Q ss_pred EEEEecCCcEEEEEecCCcEEEE--EeCCCeEEEEEeCCce----------------eeeecCCCCCCeEEEEEccCCCE
Q 000085 2155 IRRLVGVDAHAVSLSSEGVIMTW--NKLQHTLSSFTLNGVL----------------VARAKLPLSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2155 IrsL~gh~vssLSfSpDG~IlVw--dssdGsI~I~dlnG~~----------------L~s~~~~Hs~~ItsLafSPDGk~ 2216 (2342)
+..+.. ....+++++ ..+++ +..+|.|++|++.... .......|...|++++|+|+|++
T Consensus 133 ~~~~~~-~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~ 209 (355)
T 3vu4_A 133 ITDDIR-FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM 209 (355)
T ss_dssp SSCCEE-EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE
T ss_pred eEEecc-CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE
Confidence 555544 445566777 44444 4678889999987432 02334459999999999999999
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe-EEEEECCCCeEEEEEecC-CCCCeEEEEE
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS-ICFLDLHTLKVFHVLKLG-EGQDITALAL 2294 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs-IrIWDL~Tgk~L~tL~lg-Hs~~ItsLaf 2294 (2342)
|++|+. |++ |++||+.+++++..+..+ |...|++++|
T Consensus 210 l~s~s~-----------------------------------------d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~ 248 (355)
T 3vu4_A 210 VATCSQ-----------------------------------------DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKW 248 (355)
T ss_dssp EEEEET-----------------------------------------TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEE
T ss_pred EEEEeC-----------------------------------------CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEE
Confidence 999972 787 999999999999999844 9999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2295 NKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2295 SPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
+|++++|++|+.||+|++|+....
T Consensus 249 s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 249 STDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp CTTSCEEEEEETTCEEEEEESSCC
T ss_pred CCCCCEEEEEECCCEEEEEEccCC
Confidence 999999999999999999997543
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.87 E-value=8e-21 Score=226.20 Aligned_cols=257 Identities=12% Similarity=0.093 Sum_probs=192.2
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
|..+++++.|+.+++|+..+... .....+..|. ..+.+++|+|++++|++|+.||.|++||+.+++.+. +.+
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~ 125 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSGQ----TIPKAQQMHT---GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQ 125 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTSC----EEEEEEEECS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEE
T ss_pred ceEEEEECCCCcEEEEEcCCCCc----eeEEEecccc---CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-ecc
Confidence 57889999999999999764111 1112233344 446679999999999999999999999999987666 567
Q ss_pred CCCCeEEEEe--cCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCC-CccccccCCce
Q 000085 2037 HCAPVTCLAL--SSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASAD-KSRRRRIEGPI 2113 (2342)
Q Consensus 2037 Ht~~VtcLAf--SPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D-~s~~~~i~~~l 2113 (2342)
|...|++++| ++++.+|++|+.|++|++||+.++........ ...+.++.+. +..++++..+ ....|+.....
T Consensus 126 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 201 (368)
T 3mmy_A 126 HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL--PERCYCADVI--YPMAVVATAERGLIVYQLENQP 201 (368)
T ss_dssp CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC--SSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSC
T ss_pred ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec--CCCceEEEec--CCeeEEEeCCCcEEEEEecccc
Confidence 9999999999 99999999999999999999998765554421 1223333333 3344444333 33445543321
Q ss_pred ----EEecCCCCCeEEEEEecCCCE----EEEEeCCCcEEEEECCCC---eEEEEEecC--------------CcEEEEE
Q 000085 2114 ----HVLRGHHREILCCCVSSDLGV----VVSCSDSSDLLLHSIRRG---RLIRRLVGV--------------DAHAVSL 2168 (2342)
Q Consensus 2114 ----~~L~GHs~~Vt~VafSPDg~l----LaSGS~DGtIrIWDLrTG---klIrsL~gh--------------~vssLSf 2168 (2342)
.....+...+.++++.++... +++|+.||.|++||++.. ..+..+..| .+..++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 281 (368)
T 3mmy_A 202 SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF 281 (368)
T ss_dssp EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEE
T ss_pred chhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEE
Confidence 112234556777777766554 999999999999999987 556666665 3788999
Q ss_pred ecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2169 SSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2169 SpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
+|+|.+++.+..+|.|++|++...........|...|++++|+|+|++|++|+.++.
T Consensus 282 sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 282 HPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDW 338 (368)
T ss_dssp CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred ecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccc
Confidence 999999999999999999999865555555569999999999999999999986654
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.86 E-value=2e-21 Score=240.53 Aligned_cols=249 Identities=9% Similarity=-0.015 Sum_probs=164.5
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC--------CCCEEEEEEcCCcEEEEecC
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH--------DKEIITGGHVDGSIKLLTSD 2026 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp--------DGklLASGS~DGsIrVWDl~ 2026 (2342)
+++..+++++.|+++|+|+..++... .......+..| ...|.+++|+| |+++||+|+.|++|+|||+.
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~~-~~~~~~~~~gH---~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETII-TQHVLGGKSGH---HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEEE-EEEEECTTTSC---SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccc-eeeeecccCCC---CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 45667899999999999986552111 11111123334 44566699987 89999999999999999999
Q ss_pred CcccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcc
Q 000085 2027 GAKTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSR 2105 (2342)
Q Consensus 2027 tgkll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~ 2105 (2342)
++..+..+.+|...|.+++|+|++ .+|++|+.|++|++||+.++........ .........++.+.
T Consensus 175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~-~~~~~~~~~~s~~~------------ 241 (393)
T 4gq1_A 175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQ-TELVKNPWLLTLNT------------ 241 (393)
T ss_dssp TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----------CSCCCSEEEES------------
T ss_pred CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccc-cCCcccceEEeccc------------
Confidence 888888888999999999999987 4899999999999999998654333211 11111111111000
Q ss_pred ccccCCceEEecCCCCCeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--c------------------E
Q 000085 2106 RRRIEGPIHVLRGHHREILCCCVS-SDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--A------------------H 2164 (2342)
Q Consensus 2106 ~~~i~~~l~~L~GHs~~Vt~VafS-PDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--v------------------s 2164 (2342)
..........+|...|.++.|+ +++..+++++.|+++++||+.++.....+..+. + .
T Consensus 242 --~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
T 4gq1_A 242 --LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL 319 (393)
T ss_dssp --GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS
T ss_pred --ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce
Confidence 0011223346899999999997 799999999999999999999887766654432 1 1
Q ss_pred EEEEec--CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2165 AVSLSS--EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2165 sLSfSp--DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
...+++ ++.+++.+..++.|++|++...........|..+|++++|+|||++|++++.
T Consensus 320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 320 GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 122322 4456677788999999998743333334458899999999999999999984
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.85 E-value=8.3e-20 Score=225.28 Aligned_cols=236 Identities=13% Similarity=0.081 Sum_probs=196.3
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccce-----ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE-----TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~-----tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
.+++|+|++.++++++.|+.|++||+.+++... .+.+|.+.|++++|++++.++++++.|++|++||+.++.
T Consensus 126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~--- 202 (433)
T 3bws_A 126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA--- 202 (433)
T ss_dssp CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC---
T ss_pred eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce---
Confidence 358999988889999899999999999998776 566899999999999999999999999999999997742
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCe
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGtIrIWDLrTGk 2153 (2342)
.+..+..|...+.+++|+|+++.++ +++.|+.|++||+++++
T Consensus 203 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 203 -------------------------------------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp -------------------------------------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred -------------------------------------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 2344567888999999999999885 55589999999999999
Q ss_pred EEEEEecCC-cEEEEEecCCcEEEEEe--------CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2154 LIRRLVGVD-AHAVSLSSEGVIMTWNK--------LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2154 lIrsL~gh~-vssLSfSpDG~IlVwds--------sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
.+..+..+. +..++++|+|..++... .++.|++|++....+... ..|...+.+++|+|+|+++++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~-- 322 (433)
T 3bws_A 246 EIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-IGPPGNKRHIVSGNTENKIYVSDM-- 322 (433)
T ss_dssp EEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-EEEEECEEEEEECSSTTEEEEEET--
T ss_pred EEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-ccCCCCcceEEECCCCCEEEEEec--
Confidence 988887654 68899999998877765 477999999875433322 235678999999999987765531
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS 2304 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG 2304 (2342)
.|+.|++||+.+++.+..+. +...+.+++|+|+|++|+++
T Consensus 323 --------------------------------------~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~ 362 (433)
T 3bws_A 323 --------------------------------------CCSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVS 362 (433)
T ss_dssp --------------------------------------TTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEE
T ss_pred --------------------------------------CCCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEE
Confidence 26889999999999888876 67789999999999999988
Q ss_pred eC---------------CCcEEEEeCCCC
Q 000085 2305 TA---------------DKQLIVFTDPAL 2318 (2342)
Q Consensus 2305 Ss---------------DGsIrVWDi~sL 2318 (2342)
+. ||.|++||....
T Consensus 363 ~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 363 CRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp ECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred ecCCCccccccccccccceEEEEEECCCC
Confidence 76 579999997654
No 122
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.7e-20 Score=251.75 Aligned_cols=226 Identities=14% Similarity=0.130 Sum_probs=183.4
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC--CCEEEEEEcCCcEEEEecCCcc--c
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD--KEIITGGHVDGSIKLLTSDGAK--T 2030 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD--GklLASGS~DGsIrVWDl~tgk--l 2030 (2342)
++|+.+++++.|++|++|+..++ .+.....+..| ...+.+++|+++ +++|++|+.||+|++||+.+++ .
T Consensus 19 ~dg~~latg~~dg~I~vwd~~~~----~~~~~~~l~~h---~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~ 91 (753)
T 3jro_A 19 YYGKRLATCSSDKTIKIFEVEGE----THKLIDTLTGH---EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ 91 (753)
T ss_dssp SSSCCEEEEETTTEEEEEEEETT----EEEEEEEECCC---SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCCCeEEEEECCCcEEEEecCCC----CCccceeccCC---cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccc
Confidence 35677889999999999985431 12222233334 345677999988 9999999999999999999886 6
Q ss_pred ceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2031 LETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
+..+.+|.+.|++++|+|+ ++++++|+.||+|++||+.++..
T Consensus 92 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~------------------------------------ 135 (753)
T 3jro_A 92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------------------------------------ 135 (753)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC------------------------------------
T ss_pred cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC------------------------------------
Confidence 7788899999999999999 99999999999999999987421
Q ss_pred cCCceEEecCCCCCeEEEEEec-------------CCCEEEEEeCCCcEEEEECCCC----eEEEEEecCC--cEEEEEe
Q 000085 2109 IEGPIHVLRGHHREILCCCVSS-------------DLGVVVSCSDSSDLLLHSIRRG----RLIRRLVGVD--AHAVSLS 2169 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSP-------------Dg~lLaSGS~DGtIrIWDLrTG----klIrsL~gh~--vssLSfS 2169 (2342)
.....+.+|...|++++|+| ++.++++|+.||+|++||++++ ..+..+.+|. +..++|+
T Consensus 136 --~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 213 (753)
T 3jro_A 136 --TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213 (753)
T ss_dssp --CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred --cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec
Confidence 12234578999999999999 5899999999999999999887 5667777764 7899999
Q ss_pred cC---CcEEEEEeCCCeEEEEEeCCce-----eeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2170 SE---GVIMTWNKLQHTLSSFTLNGVL-----VARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2170 pD---G~IlVwdssdGsI~I~dlnG~~-----L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
|+ |.+++.+..+|.|++|++.... .......|...|++++|+|+|.++++|+.|+.
T Consensus 214 p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~ 277 (753)
T 3jro_A 214 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277 (753)
T ss_dssp CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred cCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence 99 8999999999999999997531 11112238899999999999999999975444
No 123
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.84 E-value=2e-19 Score=224.77 Aligned_cols=225 Identities=13% Similarity=0.118 Sum_probs=176.8
Q ss_pred CCeEEecCCCceEEEecCCCCCCCc----ccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCccc-
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGAD----EWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKT- 2030 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~----ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkl- 2030 (2342)
+..+++++.++.|++|+........ .......+..|.. .+.+++|+|++. +|++|+.||.|++|++.++..
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 217 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK---EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE 217 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS---CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBG
T ss_pred CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC---CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCC
Confidence 5688899999999999865411100 0122223344444 455699999999 999999999999999987432
Q ss_pred ------ceecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC
Q 000085 2031 ------LETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK 2103 (2342)
Q Consensus 2031 ------l~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~ 2103 (2342)
...+.+|...|.+++|+| ++.+|++|+.|++|++||+++...
T Consensus 218 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~------------------------------- 266 (430)
T 2xyi_A 218 HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT------------------------------- 266 (430)
T ss_dssp GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS-------------------------------
T ss_pred CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC-------------------------------
Confidence 456778999999999999 678999999999999999987421
Q ss_pred ccccccCCceEEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCC-CeEEEEEecCC--cEEEEEecCCc-EEEEE
Q 000085 2104 SRRRRIEGPIHVLRGHHREILCCCVSSDLG-VVVSCSDSSDLLLHSIRR-GRLIRRLVGVD--AHAVSLSSEGV-IMTWN 2178 (2342)
Q Consensus 2104 s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~-lLaSGS~DGtIrIWDLrT-GklIrsL~gh~--vssLSfSpDG~-IlVwd 2178 (2342)
..++..+..|...|++++|+|++. ++++|+.||+|++||+++ +..+..+..|. +..++|+|+|. +++.+
T Consensus 267 ------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~ 340 (430)
T 2xyi_A 267 ------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 340 (430)
T ss_dssp ------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEE
T ss_pred ------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEE
Confidence 123445678999999999999987 789999999999999998 56777887664 78999999995 68888
Q ss_pred eCCCeEEEEEeCC--------------ceeeeecCCCCCCeEEEEEccCCC-EEEEEe
Q 000085 2179 KLQHTLSSFTLNG--------------VLVARAKLPLSGSIGCMEISLDGH-SALIGV 2221 (2342)
Q Consensus 2179 ssdGsI~I~dlnG--------------~~L~s~~~~Hs~~ItsLafSPDGk-~LaSGS 2221 (2342)
..++.|++|++.. ..+......|...|++++|+|++. ++++++
T Consensus 341 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 398 (430)
T 2xyi_A 341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398 (430)
T ss_dssp ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence 8999999999864 123333345889999999999999 788776
No 124
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.5e-19 Score=226.60 Aligned_cols=220 Identities=9% Similarity=0.052 Sum_probs=180.7
Q ss_pred eeEEEEEcCCCCEE-EEEEcCCcEEEEecC--Ccccceecc--cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc
Q 000085 1998 SSAVVSITHDKEII-TGGHVDGSIKLLTSD--GAKTLETAS--GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1998 Svt~VafSpDGklL-ASGS~DGsIrVWDl~--tgkll~tL~--GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
.+.+++|+|++++| ++|+.||+|+|||+. +++.+..+. .|...|++++|+|++++|++|+.|+.|++|++.++..
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~ 183 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPE 183 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCC
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccc
Confidence 57889999999985 899999999999999 888888876 5778999999999999999999999999999988664
Q ss_pred cc-c--cccCCCCCCccccccCC---CCCceeecCCCc-cccccC--CceEE-ecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2073 SR-T--GTIEPSSGMGTPGNSIG---SSTPANASADKS-RRRRIE--GPIHV-LRGHHREILCCCVSSDLGVVVSCSDSS 2142 (2342)
Q Consensus 2073 i~-t--~~~~~~~~V~svs~SpD---G~~Las~s~D~s-~~~~i~--~~l~~-L~GHs~~Vt~VafSPDg~lLaSGS~DG 2142 (2342)
.. . ....+...+.++.|+|+ +..+++++.|+. ..|+.. ..+.. +.+|...|++++|+ ++.++++|+.||
T Consensus 184 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~ 262 (450)
T 2vdu_B 184 EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDD 262 (450)
T ss_dssp SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSS
T ss_pred ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCC
Confidence 43 1 23457788999999999 888988888764 457653 44555 56899999999999 999999999999
Q ss_pred cEEEEECCCCeEEEEEecC---------------------------CcEEEEEecCCcEEEEEe-CCCeEEEEEe--CCc
Q 000085 2143 DLLLHSIRRGRLIRRLVGV---------------------------DAHAVSLSSEGVIMTWNK-LQHTLSSFTL--NGV 2192 (2342)
Q Consensus 2143 tIrIWDLrTGklIrsL~gh---------------------------~vssLSfSpDG~IlVwds-sdGsI~I~dl--nG~ 2192 (2342)
+|++||+++++++..+..+ .+..++++++|.+++... .++.|++|++ ...
T Consensus 263 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~ 342 (450)
T 2vdu_B 263 KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK 342 (450)
T ss_dssp EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSST
T ss_pred eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC
Confidence 9999999999999888632 256889999999998887 7899999999 322
Q ss_pred ---eeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2193 ---LVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2193 ---~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
........| ..|.+++|+|++ ++++.
T Consensus 343 ~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~ 371 (450)
T 2vdu_B 343 GDLALKQIITFP-YNVISLSAHNDE-FQVTL 371 (450)
T ss_dssp TCEEEEEEEECS-SCEEEEEEETTE-EEEEE
T ss_pred CceeeccEeccC-CceEEEEecCCc-EEEEE
Confidence 222222235 899999999964 44433
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.84 E-value=7.2e-19 Score=214.64 Aligned_cols=282 Identities=12% Similarity=0.060 Sum_probs=187.8
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEE-EEEEcCCcEEEEecCCccccee
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEII-TGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklL-ASGS~DGsIrVWDl~tgkll~t 2033 (2342)
++|+.+++++.+ .+++|+..++.. ....+.. .+.++++.++++.+ ++|+.|++|+|||..+++.+..
T Consensus 29 ~dg~~la~g~~~-~~~iw~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~ 96 (355)
T 3vu4_A 29 QDQSCLILSTLK-SFEIYNVHPVAH--------IMSQEMR---HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR 96 (355)
T ss_dssp TTSSEEEEECSS-EEEEEEETTEEE--------EEEEECS---CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEcCC-EEEEEecCCcce--------eeeeecC---CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence 567778877766 578998554110 1111111 24568889988866 5678889999999999999888
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC-ccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA-FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg-~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
+. |...|.+++|+++. ++.+ .|++|++||+.++ .....
T Consensus 97 ~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~------------------------------------- 135 (355)
T 3vu4_A 97 IK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITD------------------------------------- 135 (355)
T ss_dssp EE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSC-------------------------------------
T ss_pred EE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEE-------------------------------------
Confidence 87 67799999998764 4433 4889999999874 22111
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEE--EeCCCcEEEEECCCCe----------------EEEEEecCC--cEEEEEecCC
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVS--CSDSSDLLLHSIRRGR----------------LIRRLVGVD--AHAVSLSSEG 2172 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaS--GS~DGtIrIWDLrTGk----------------lIrsL~gh~--vssLSfSpDG 2172 (2342)
+.. ....+++++ .+++. |+.||.|++||++++. ++..+.+|. +..++|+|+|
T Consensus 136 ---~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g 207 (355)
T 3vu4_A 136 ---DIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS 207 (355)
T ss_dssp ---CEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS
T ss_pred ---ecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC
Confidence 111 334455666 55555 6899999999999876 267777775 7899999999
Q ss_pred cEEEEEeCCCe-EEEEEeC-CceeeeecCC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccc-cc
Q 000085 2173 VIMTWNKLQHT-LSSFTLN-GVLVARAKLP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTED-FD 2248 (2342)
Q Consensus 2173 ~IlVwdssdGs-I~I~dln-G~~L~s~~~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ia-Fs 2248 (2342)
.+++.+..++. +++|++. +..+.....+ |...|++++|+|+|++|++|+.|+. .++|++......... +.
T Consensus 208 ~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~------v~iw~~~~~~~~~~~~~~ 281 (355)
T 3vu4_A 208 DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT------LHVFEIFNDQDNKRHALK 281 (355)
T ss_dssp SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE------EEEEESSCCSCCCSEETT
T ss_pred CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE------EEEEEccCCCCccccccc
Confidence 99999999998 9999997 5555554435 9999999999999999999986544 334444332111000 00
Q ss_pred cccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2249 LASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2249 pd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
.. ..... .+. .|.+ ....+...+......++|++|+++|++++.||.+++|++..
T Consensus 282 ~~--~~~~~-----~~~---~~~~----~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 282 GW--INMKY-----FQS---EWSL----CNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp TT--EECCC-----CCC---SSCS----EEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred ce--eeccc-----ccc---ccce----eEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 00 00000 000 0000 01111212233457799999999999999999999999543
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.83 E-value=1.8e-18 Score=210.41 Aligned_cols=225 Identities=16% Similarity=0.102 Sum_probs=183.5
Q ss_pred CEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccCCCCCCccc
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTP 2087 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~sv 2087 (2342)
.++++++.|+.|++||+.+++.+..+.+|.. +.+++|+|++++| ++++.|++|++||+.++..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~--------------- 66 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--------------- 66 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE---------------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeE---------------
Confidence 4688899999999999999999998887765 8999999999977 6788999999999987532
Q ss_pred cccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCeEEEEEecC-CcEE
Q 000085 2088 GNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSDLLLHSIRRGRLIRRLVGV-DAHA 2165 (2342)
Q Consensus 2088 s~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGtIrIWDLrTGklIrsL~gh-~vss 2165 (2342)
+..+..|. .+.+++|+|++++++ +++.|+.|++||+.+++.+..+..+ .+..
T Consensus 67 -------------------------~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 120 (391)
T 1l0q_A 67 -------------------------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLG 120 (391)
T ss_dssp -------------------------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred -------------------------EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcce
Confidence 22333343 899999999999775 5557799999999999999888765 4788
Q ss_pred EEEecCCcEE-EEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc
Q 000085 2166 VSLSSEGVIM-TWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT 2244 (2342)
Q Consensus 2166 LSfSpDG~Il-VwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ 2244 (2342)
++++++|+.+ +.+..++.+++|++.......... +...+.+++|+|+|+++++++.
T Consensus 121 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~---------------------- 177 (391)
T 1l0q_A 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-VGRSPKGIAVTPDGTKVYVANF---------------------- 177 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEET----------------------
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe-cCCCcceEEECCCCCEEEEEeC----------------------
Confidence 9999999866 666778999999987544333222 3467799999999998854431
Q ss_pred cccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEeCCCC
Q 000085 2245 EDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST---ADKQLIVFTDPAL 2318 (2342)
Q Consensus 2245 iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS---sDGsIrVWDi~sL 2318 (2342)
.++.|++||+.+++.+..+. +...+.+++|+|++++|++++ .|+.|++||....
T Consensus 178 ------------------~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 178 ------------------DSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp ------------------TTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred ------------------CCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 26789999999999888876 566899999999999999888 7999999997654
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.82 E-value=2.1e-19 Score=219.24 Aligned_cols=186 Identities=12% Similarity=0.055 Sum_probs=135.7
Q ss_pred cceeEEEEEcCC----CCEEEEEEc--------------------CCcEEEEec-CCcccceecccCCCCeEEEEecC--
Q 000085 1996 IRSSAVVSITHD----KEIITGGHV--------------------DGSIKLLTS-DGAKTLETASGHCAPVTCLALSS-- 2048 (2342)
Q Consensus 1996 I~Svt~VafSpD----GklLASGS~--------------------DGsIrVWDl-~tgkll~tL~GHt~~VtcLAfSP-- 2048 (2342)
+..+..++++|| ++++++++. |+.|++|++ .+|+.+..+.+|...|+.++|++
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ 190 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence 346778999999 888887663 888888888 45777788888888888888888
Q ss_pred -CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCC---CCCeE
Q 000085 2049 -DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH---HREIL 2124 (2342)
Q Consensus 2049 -DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH---s~~Vt 2124 (2342)
++.+|+|||.|++|+|||+.+++++++ +.+| ...+.
T Consensus 191 g~~~~LaSgS~D~TIkIWDl~TGk~l~t----------------------------------------L~g~~~~v~~v~ 230 (356)
T 2w18_A 191 GMQEALLGTTIMNNIVIWNLKTGQLLKK----------------------------------------MHIDDSYQASVC 230 (356)
T ss_dssp TSTTEEEEEETTSEEEEEETTTCCEEEE----------------------------------------EECCC---CCCE
T ss_pred CCCceEEEecCCCcEEEEECCCCcEEEE----------------------------------------EcCCCcceeeeE
Confidence 678999999999999999998754433 3332 23566
Q ss_pred EEEEecCCCEE------------EEEeCCCcEEEEECCCCeEEEEEe-----cCCcEEEEEecCCcEEEEEeCCCeEEEE
Q 000085 2125 CCCVSSDLGVV------------VSCSDSSDLLLHSIRRGRLIRRLV-----GVDAHAVSLSSEGVIMTWNKLQHTLSSF 2187 (2342)
Q Consensus 2125 ~VafSPDg~lL------------aSGS~DGtIrIWDLrTGklIrsL~-----gh~vssLSfSpDG~IlVwdssdGsI~I~ 2187 (2342)
+++|+|+|.++ ++|+.|++|++||..+++.+..+. +|....++.+.+|.+++.+..+++|++|
T Consensus 231 ~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIW 310 (356)
T 2w18_A 231 HKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIW 310 (356)
T ss_dssp EEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEE
T ss_pred EEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEE
Confidence 67777777665 678899999999999999887762 4544455666667788888888899999
Q ss_pred EeCCceeeeecCCCCCCeE-EEEEccCCCEEEEEe
Q 000085 2188 TLNGVLVARAKLPLSGSIG-CMEISLDGHSALIGV 2221 (2342)
Q Consensus 2188 dlnG~~L~s~~~~Hs~~It-sLafSPDGk~LaSGS 2221 (2342)
++..........+|...+. +++|+|||++|++|+
T Consensus 311 Dl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS 345 (356)
T 2w18_A 311 DLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ 345 (356)
T ss_dssp ETTTCSEEEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred ECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence 9875444444445766554 689999999999997
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.82 E-value=2.1e-18 Score=223.86 Aligned_cols=320 Identities=9% Similarity=0.049 Sum_probs=228.6
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEec--CCcccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTS--DGAKTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl--~tgkll~ 2032 (2342)
+++..+++.+.|+++++|+..++... ..+.. +.. +.+++|+|||++|++++.|++|++||+ .+++.+.
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~t~~~~------~~i~~---g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~ 216 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGDSKKIV------KVIDT---GYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA 216 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETTTCCEE------EEEEC---STT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CCCEEEEEEcCCCeEEEEECCCceEE------EEEec---Ccc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEE
Confidence 35567788888999999997763221 12221 111 456999999999999999999999999 8888888
Q ss_pred ecccCCCCeEEEEecC----CCCEEEEEe-CCCceEEEeccCCccccccccC---------C-CCCCccccccCCCCCce
Q 000085 2033 TASGHCAPVTCLALSS----DSNFLVTGS-QDTTILLWRIHRAFTSRTGTIE---------P-SSGMGTPGNSIGSSTPA 2097 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSP----DG~~LaSGS-~DGTVrVWDl~tg~~i~t~~~~---------~-~~~V~svs~SpDG~~La 2097 (2342)
++.. ...+..++|+| ||++|++++ .+++|.|||..+++.+...... + ...+..+.+++++..++
T Consensus 217 ~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 217 EIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp EEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred EEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 8874 45679999999 999999988 4899999999887765554211 1 22566788899877664
Q ss_pred eec-CCC-ccccccCC--ceE-EecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeEEEEEec----CCcEEEE
Q 000085 2098 NAS-ADK-SRRRRIEG--PIH-VLRGHHREILCCCVSSDLGVVVSC-SDSSDLLLHSIRRGRLIRRLVG----VDAHAVS 2167 (2342)
Q Consensus 2098 s~s-~D~-s~~~~i~~--~l~-~L~GHs~~Vt~VafSPDg~lLaSG-S~DGtIrIWDLrTGklIrsL~g----h~vssLS 2167 (2342)
+.. .++ +..++... .+. ....+...+.+++|+|++++++++ ..+++|.+||+.+++++..+.. |....+.
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~ 375 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN 375 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE
T ss_pred EEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc
Confidence 443 332 33344322 111 122456678899999999977655 5689999999999999998874 4322222
Q ss_pred -EecC-CcEEEEEe-CCCeEEEEEeCC-------ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccccc
Q 000085 2168 -LSSE-GVIMTWNK-LQHTLSSFTLNG-------VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGL 2237 (2342)
Q Consensus 2168 -fSpD-G~IlVwds-sdGsI~I~dlnG-------~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l 2237 (2342)
++|+ |.+++.+. .+++|.+|+... ..+......|...+..++++|||++|++++.-+.
T Consensus 376 ~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~------------ 443 (543)
T 1nir_A 376 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNP------------ 443 (543)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCS------------
T ss_pred cCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCC------------
Confidence 4677 66555553 568999999864 3333333447778899999999999997641000
Q ss_pred CCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEE-EEEec-------CCCCCeEEEEEecCCCEEEEEe----
Q 000085 2238 NSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVF-HVLKL-------GEGQDITALALNKDNTNLLVST---- 2305 (2342)
Q Consensus 2238 ~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L-~tL~l-------gHs~~ItsLafSPDG~~LaSGS---- 2305 (2342)
+. -.+++|.|||+.+++.. ..+.. .+...+..+.|+|||+.|+++.
T Consensus 444 ------------~~----------~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~ 501 (543)
T 1nir_A 444 ------------DA----------RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK 501 (543)
T ss_dssp ------------SH----------HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCT
T ss_pred ------------Cc----------ccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCC
Confidence 00 01568999999999877 44421 4577899999999999998763
Q ss_pred -CCCcEEEEeCCCCC
Q 000085 2306 -ADKQLIVFTDPALS 2319 (2342)
Q Consensus 2306 -sDGsIrVWDi~sLs 2319 (2342)
.|+.|.|||..++.
T Consensus 502 ~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 502 NDSSALVVVDDKTLK 516 (543)
T ss_dssp TSCCEEEEEETTTTE
T ss_pred CCCCeEEEEECCCce
Confidence 47999999987764
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.81 E-value=2.4e-18 Score=215.12 Aligned_cols=226 Identities=14% Similarity=0.094 Sum_probs=176.3
Q ss_pred CCEEEEEEcC------CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCC---ceEEEeccCCcccccccc
Q 000085 2008 KEIITGGHVD------GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDT---TILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2008 GklLASGS~D------GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DG---TVrVWDl~tg~~i~t~~~ 2078 (2342)
+..++.++.+ +.|++||+++ .....+.+|.+.|.+++|+|||++|++++.|+ +|++||+.++..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~------ 215 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV------ 215 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE------
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE------
Confidence 5555555544 7999999974 56778889999999999999999999999885 999999987521
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCc--EEEEECCCCeEE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSD--LLLHSIRRGRLI 2155 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGt--IrIWDLrTGklI 2155 (2342)
..+..|...+.+++|+|||+.|+ +++.||. |++||+.+++.
T Consensus 216 -----------------------------------~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~- 259 (415)
T 2hqs_A 216 -----------------------------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI- 259 (415)
T ss_dssp -----------------------------------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-
T ss_pred -----------------------------------EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-
Confidence 23456778899999999999877 7777665 99999999876
Q ss_pred EEEecCC--cEEEEEecCCcEEEEEeC-CC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCC
Q 000085 2156 RRLVGVD--AHAVSLSSEGVIMTWNKL-QH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGS 2230 (2342)
Q Consensus 2156 rsL~gh~--vssLSfSpDG~IlVwdss-dG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i 2230 (2342)
..+..+. +..++|+|||+.+++... ++ .+.+|++.+..... ...+...+.+++|+|||++|++++.+..
T Consensus 260 ~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~spdG~~l~~~~~~~g----- 333 (415)
T 2hqs_A 260 RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSSNGG----- 333 (415)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSSEEEEEEECSS-----
T ss_pred EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-EecCCCcccCeEECCCCCEEEEEECcCC-----
Confidence 4454443 678999999998887765 44 67777877544332 2236678999999999999998863211
Q ss_pred cccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCC--
Q 000085 2231 YDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK-- 2308 (2342)
Q Consensus 2231 ~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG-- 2308 (2342)
+..|++||+.+++.. .+. .|. .+.+++|+|||++|++++.|+
T Consensus 334 ---------------------------------~~~i~~~d~~~~~~~-~l~-~~~-~~~~~~~spdg~~l~~~s~~~~~ 377 (415)
T 2hqs_A 334 ---------------------------------QQHIAKQDLATGGVQ-VLS-STF-LDETPSLAPNGTMVIYSSSQGMG 377 (415)
T ss_dssp ---------------------------------CEEEEEEETTTCCEE-ECC-CSS-SCEEEEECTTSSEEEEEEEETTE
T ss_pred ---------------------------------ceEEEEEECCCCCEE-Eec-CCC-CcCCeEEcCCCCEEEEEEcCCCc
Confidence 457999999998864 444 444 899999999999999998877
Q ss_pred -cEEEEeCCCC
Q 000085 2309 -QLIVFTDPAL 2318 (2342)
Q Consensus 2309 -sIrVWDi~sL 2318 (2342)
.|++|+..+.
T Consensus 378 ~~l~~~d~~g~ 388 (415)
T 2hqs_A 378 SVLNLVSTDGR 388 (415)
T ss_dssp EEEEEEETTSC
T ss_pred cEEEEEECCCC
Confidence 7999997644
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.78 E-value=1.5e-17 Score=220.56 Aligned_cols=312 Identities=9% Similarity=-0.023 Sum_probs=216.8
Q ss_pred ecCCCeEEecCC-Cc-----eEEEecCCCCCCCcccccccceeccccC---------------------cceeEEEEEcC
Q 000085 1954 FQHGKASASPAS-GT-----FLRMFKGPGGSGADEWHFPRALAFASSG---------------------IRSSAVVSITH 2006 (2342)
Q Consensus 1954 f~~Gk~LaSsSs-D~-----tIRVwdg~tgs~~~ew~~p~sls~hs~g---------------------I~Svt~VafSp 2006 (2342)
.++|+.+++++. |+ .+++|+..++.... ....+... ...+..++|||
T Consensus 45 SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 45 APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL------LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE------EECGGGTC--------------------CCEESCCCEECT
T ss_pred ecCCCEEEEEeccCCCCcccEEEEEECCCCceeE------ccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 456777877776 66 89999876632111 11111100 02245689999
Q ss_pred CCCEEEEEEcCCcEEEEecCCcc--cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC---
Q 000085 2007 DKEIITGGHVDGSIKLLTSDGAK--TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS--- 2081 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~tgk--ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~--- 2081 (2342)
||++|++++. +.|++||+.++. ....+..|...+.+++|||||++|++++ +++|.+||+.++...........
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~ 196 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIG 196 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEE
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcccee
Confidence 9999999885 999999999883 4556778889999999999999999988 56999999988654332211111
Q ss_pred ------------CCCccccccCCCCCceeecCCC----------------------------------ccccccCC--ce
Q 000085 2082 ------------SGMGTPGNSIGSSTPANASADK----------------------------------SRRRRIEG--PI 2113 (2342)
Q Consensus 2082 ------------~~V~svs~SpDG~~Las~s~D~----------------------------------s~~~~i~~--~l 2113 (2342)
..+..+.|+|||+.++....+. +..|+... ..
T Consensus 197 ~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 276 (741)
T 2ecf_A 197 NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT 276 (741)
T ss_dssp ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC
T ss_pred ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce
Confidence 1147789999999998775442 12233322 22
Q ss_pred EEec---CCCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECCCCeEEEEEecCC------cEEEEEecCCcEEEEEe
Q 000085 2114 HVLR---GHHREILCCCVSSDLGVVVSCSD-----SSDLLLHSIRRGRLIRRLVGVD------AHAVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2114 ~~L~---GHs~~Vt~VafSPDg~lLaSGS~-----DGtIrIWDLrTGklIrsL~gh~------vssLSfSpDG~IlVwds 2179 (2342)
..+. .|...+.+++| |||+.|++++. ++.|++||+.+++....+..+. +..++|+|||++++...
T Consensus 277 ~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 355 (741)
T 2ecf_A 277 QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSE 355 (741)
T ss_dssp EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEEC
T ss_pred EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEec
Confidence 2222 47788999999 99999987654 5789999999999877766543 35789999999777777
Q ss_pred CCCeEEEEEeC--CceeeeecCCCCCCeEEE-EEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccC
Q 000085 2180 LQHTLSSFTLN--GVLVARAKLPLSGSIGCM-EISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVD 2256 (2342)
Q Consensus 2180 sdGsI~I~dln--G~~L~s~~~~Hs~~ItsL-afSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~s 2256 (2342)
.++..++|.++ +. ......|...|.++ .|+|||+.++..+.+..
T Consensus 356 ~~g~~~l~~~~~~~~--~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~------------------------------- 402 (741)
T 2ecf_A 356 RTGFQHLYRIDSKGK--AAALTHGNWSVDELLAVDEKAGLAYFRAGIES------------------------------- 402 (741)
T ss_dssp TTSSCEEEEECSSSC--EEESCCSSSCEEEEEEEETTTTEEEEEECSSC-------------------------------
T ss_pred CCCccEEEEEcCCCC--eeeeeecceEEEeEeEEeCCCCEEEEEEeCCC-------------------------------
Confidence 77876777654 55 33334477788887 59999998876542111
Q ss_pred CCCccCCCCeEEEEECCC-CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEeCC
Q 000085 2257 NNRFDFPSPSICFLDLHT-LKVFHVLKLGEGQDITALALNKDNTNLLVSTAD----KQLIVFTDP 2316 (2342)
Q Consensus 2257 s~~ias~DGsIrIWDL~T-gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD----GsIrVWDi~ 2316 (2342)
...++||++.. +.....+. +...+.+++|+|||++|+....+ +.+.+|+..
T Consensus 403 -------~~~~~l~~~~~~g~~~~~l~--~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 403 -------ARESQIYAVPLQGGQPQRLS--KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp -------TTCBEEEEEETTCCCCEECC--CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred -------CceEEEEEEEcCCCCeeecc--cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 12577887753 44445555 35678999999999998876443 468888854
No 131
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.78 E-value=9.2e-18 Score=192.86 Aligned_cols=260 Identities=13% Similarity=0.041 Sum_probs=188.0
Q ss_pred EEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC-CccccccccCCCCCCccccccC
Q 000085 2013 GGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR-AFTSRTGTIEPSSGMGTPGNSI 2091 (2342)
Q Consensus 2013 SGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t-g~~i~t~~~~~~~~V~svs~Sp 2091 (2342)
.++.|++|++||+.+++.. .+..|...|.+++|+|+|++|++++ ++.|.+||+.+ +.............+..+.|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 3457899999999988765 4566899999999999999999987 88999999988 6544333233346678899999
Q ss_pred CCCCceeecCC---Ccccc--cc-CCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEECC--CCeEEEEEecC-
Q 000085 2092 GSSTPANASAD---KSRRR--RI-EGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSDLLLHSIR--RGRLIRRLVGV- 2161 (2342)
Q Consensus 2092 DG~~Las~s~D---~s~~~--~i-~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGtIrIWDLr--TGklIrsL~gh- 2161 (2342)
+++.++....+ ....| +. ......+..+. .+.+++|+|+++.++ +++.|+.+.+|++. ++.. ..+..+
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 172 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLTHGE 172 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECCCSS
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcccCC
Confidence 99999887733 22233 22 23344444443 489999999999877 78899999999863 4443 344333
Q ss_pred -CcEEEEEecCCcEEEEEe-CCCeEEEEEeC--CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccccc
Q 000085 2162 -DAHAVSLSSEGVIMTWNK-LQHTLSSFTLN--GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGL 2237 (2342)
Q Consensus 2162 -~vssLSfSpDG~IlVwds-sdGsI~I~dln--G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l 2237 (2342)
.+..++|+|+|..+++.. .++.+.+|.++ +..+. ....|...+.+++|+|+|++|++++.++....
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~--------- 242 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE-RITDSAYGDWFPHPSPSGDKVVFVSYDADVFD--------- 242 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE-ECCCCSEEEEEEEECTTSSEEEEEEEETTCCS---------
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE-EEecCCcccCCeEECCCCCEEEEEEcCCCCCc---------
Confidence 368899999999877765 47778888774 43333 23347788999999999999998874433100
Q ss_pred CCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE--EEEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2238 NSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV--FHVLKLGEGQDITALALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2238 ~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~--L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG 2308 (2342)
.....++.|++||+.+++. +..+. +|...+.+++|+|++++|++++.|.
T Consensus 243 ---------------------~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 243 ---------------------HPRDLDVRVQLMDMDGGNVETLFDLF-GGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ---------------------CCSSEEEEEEEEETTSCSCEEEEEEE-ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ---------------------ccccCceEEEEEecCCCCceeeeccC-CCCcccccceECCCCCEEEEEEecc
Confidence 0000146799999988765 44444 6788899999999999999887654
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.77 E-value=4.6e-17 Score=203.60 Aligned_cols=238 Identities=11% Similarity=0.004 Sum_probs=180.4
Q ss_pred ceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCC---cEEEEecCCcccceecccCCCCeEE
Q 000085 1967 TFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDG---SIKLLTSDGAKTLETASGHCAPVTC 2043 (2342)
Q Consensus 1967 ~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DG---sIrVWDl~tgkll~tL~GHt~~Vtc 2043 (2342)
+.|++|+..+. ....+..|.. .+.+++|+|||+.|++++.|+ .|++||+.+++.. .+..|.+.+.+
T Consensus 159 ~~i~i~d~~g~-------~~~~l~~~~~---~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~ 227 (415)
T 2hqs_A 159 YELRVSDYDGY-------NQFVVHRSPQ---PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGA 227 (415)
T ss_dssp EEEEEEETTSC-------SCEEEEEESS---CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEE
T ss_pred ceEEEEcCCCC-------CCEEEeCCCC---cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccC
Confidence 79999986531 1233334443 356699999999999999885 9999999998765 56778899999
Q ss_pred EEecCCCCEEE-EEeCCCc--eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCC
Q 000085 2044 LALSSDSNFLV-TGSQDTT--ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHH 2120 (2342)
Q Consensus 2044 LAfSPDG~~La-SGS~DGT--VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs 2120 (2342)
++|+|||++|+ +++.|+. |.+||+.++. ...+..|.
T Consensus 228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-----------------------------------------~~~l~~~~ 266 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-----------------------------------------IRQVTDGR 266 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCC-----------------------------------------EEECCCCS
T ss_pred EEEcCCCCEEEEEEecCCCceEEEEECCCCC-----------------------------------------EEeCcCCC
Confidence 99999999887 7777765 8888887642 23456677
Q ss_pred CCeEEEEEecCCCEEEEEeC-CC--cEEEEECCCCeEEEEEec--CCcEEEEEecCCcEEEEEeCC---CeEEEEEeCCc
Q 000085 2121 REILCCCVSSDLGVVVSCSD-SS--DLLLHSIRRGRLIRRLVG--VDAHAVSLSSEGVIMTWNKLQ---HTLSSFTLNGV 2192 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS~-DG--tIrIWDLrTGklIrsL~g--h~vssLSfSpDG~IlVwdssd---GsI~I~dlnG~ 2192 (2342)
..+.+++|+|||+.|++++. +| .|++||+.+++.. .+.. ..+..++|+|||+.+++...+ ..|.+|++.+.
T Consensus 267 ~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 267 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 88999999999999988876 45 6888899888743 3333 346778999999988887653 57999998765
Q ss_pred eeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEEC
Q 000085 2193 LVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDL 2272 (2342)
Q Consensus 2193 ~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL 2272 (2342)
..... ..+ ..+.+++|+|||++|++++.++. ...|++||+
T Consensus 346 ~~~~l-~~~-~~~~~~~~spdg~~l~~~s~~~~--------------------------------------~~~l~~~d~ 385 (415)
T 2hqs_A 346 GVQVL-SST-FLDETPSLAPNGTMVIYSSSQGM--------------------------------------GSVLNLVST 385 (415)
T ss_dssp CEEEC-CCS-SSCEEEEECTTSSEEEEEEEETT--------------------------------------EEEEEEEET
T ss_pred CEEEe-cCC-CCcCCeEEcCCCCEEEEEEcCCC--------------------------------------ccEEEEEEC
Confidence 54332 224 38999999999999998863221 236999999
Q ss_pred CCCeEEEEEecCCCCCeEEEEEecCCC
Q 000085 2273 HTLKVFHVLKLGEGQDITALALNKDNT 2299 (2342)
Q Consensus 2273 ~Tgk~L~tL~lgHs~~ItsLafSPDG~ 2299 (2342)
..+ ....+. +|.+.|.+++|+|.-.
T Consensus 386 ~g~-~~~~l~-~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 386 DGR-FKARLP-ATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TSC-CEEECC-CSSSEEEEEEECCCCC
T ss_pred CCC-cEEEee-CCCCCCcCCccccccc
Confidence 744 456676 7889999999999653
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.76 E-value=2.3e-16 Score=186.60 Aligned_cols=268 Identities=11% Similarity=0.144 Sum_probs=183.8
Q ss_pred EecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcC-CcEEEEecC--Ccc--cceecc
Q 000085 1961 ASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVD-GSIKLLTSD--GAK--TLETAS 2035 (2342)
Q Consensus 1961 aSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~D-GsIrVWDl~--tgk--ll~tL~ 2035 (2342)
++++.++.+++|+... .. ....... ..+ ...+.+++|+|+|++|++++.+ +.|++|+++ +++ .+..+.
T Consensus 9 ~~~~~~~~v~~~~~~~-~~--~~~~~~~-~~~---~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 81 (343)
T 1ri6_A 9 IASPESQQIHVWNLNH-EG--ALTLTQV-VDV---PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA 81 (343)
T ss_dssp EEEGGGTEEEEEEECT-TS--CEEEEEE-EEC---SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred EeCCCCCeEEEEEECC-CC--cEEEeee-Eec---CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc
Confidence 4446688999998642 11 1111111 111 2234569999999988888876 999999997 554 334455
Q ss_pred cCCCCeEEEEecCCCCEEEEEeC-CCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceE
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIH 2114 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~ 2114 (2342)
.+. .+.+++|+|+|++|++++. +++|.+||+..+... ....
T Consensus 82 ~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-------------------------------------~~~~ 123 (343)
T 1ri6_A 82 LPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV-------------------------------------GVVD 123 (343)
T ss_dssp CSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE-------------------------------------EEEE
T ss_pred cCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc-------------------------------------cccc
Confidence 444 7899999999998877665 889999999532100 1112
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CeEEE----EEec---CCcEEEEEecCCcEEEE-EeCCCeE
Q 000085 2115 VLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIRR-GRLIR----RLVG---VDAHAVSLSSEGVIMTW-NKLQHTL 2184 (2342)
Q Consensus 2115 ~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrT-GklIr----sL~g---h~vssLSfSpDG~IlVw-dssdGsI 2184 (2342)
.+..+ ..+.+++|+|+++++++++ .|+.|.+||+.+ ++... .+.. .....++++|+|..++. +..++.+
T Consensus 124 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i 202 (343)
T 1ri6_A 124 VVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSV 202 (343)
T ss_dssp EECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred cccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEE
Confidence 22333 3588899999999888777 899999999987 65533 2222 24678999999996554 4578899
Q ss_pred EEEEeCC--ce---eeeec-CC----CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccc
Q 000085 2185 SSFTLNG--VL---VARAK-LP----LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQS 2254 (2342)
Q Consensus 2185 ~I~dlnG--~~---L~s~~-~~----Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s 2254 (2342)
.+|+++. .. ..... .+ ....+.+++|+|+|++++++..
T Consensus 203 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~-------------------------------- 250 (343)
T 1ri6_A 203 DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR-------------------------------- 250 (343)
T ss_dssp EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET--------------------------------
T ss_pred EEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec--------------------------------
Confidence 9999853 11 11111 11 1346778999999998886531
Q ss_pred cCCCCccCCCCeEEEEECC----CCeEEEEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 000085 2255 VDNNRFDFPSPSICFLDLH----TLKVFHVLKLGEGQDITALALNKDNTNLLVST-ADKQLIVFTDP 2316 (2342)
Q Consensus 2255 ~ss~~ias~DGsIrIWDL~----Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS-sDGsIrVWDi~ 2316 (2342)
.++.|.+||+. +.+.+..+. .+. .+.+++|+|+|++|++++ .|+.|.+|+++
T Consensus 251 --------~~~~i~v~d~~~~~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 251 --------TASLITVFSVSEDGSVLSKEGFQP-TET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp --------TTTEEEEEEECTTSCCEEEEEEEE-CSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred --------CCCEEEEEEEcCCCCceEEeeeec-CCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 16789999998 345555565 333 389999999999999887 68999999643
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.75 E-value=5e-17 Score=225.50 Aligned_cols=329 Identities=10% Similarity=0.068 Sum_probs=232.2
Q ss_pred eeecCCCeEEecCC------CceEEEecCCCCCCCcccccccceeccccCc----ceeEEEEEcCCCCEEEEEEcC----
Q 000085 1952 FLFQHGKASASPAS------GTFLRMFKGPGGSGADEWHFPRALAFASSGI----RSSAVVSITHDKEIITGGHVD---- 2017 (2342)
Q Consensus 1952 flf~~Gk~LaSsSs------D~tIRVwdg~tgs~~~ew~~p~sls~hs~gI----~Svt~VafSpDGklLASGS~D---- 2017 (2342)
..-++|+.|+.++. +..|.+|+..++. ...+..|...+ ..+..++|+|||+++++++.+
T Consensus 59 ~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-------~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~ 131 (1045)
T 1k32_A 59 RFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-------IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFS 131 (1045)
T ss_dssp EECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-------EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSST
T ss_pred EECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-------eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCc
Confidence 33467888887643 3478888865521 22333333222 123679999999977877754
Q ss_pred --CcEEEEecCCcccc-------------------------------------------------eecccCCCCeEEEEe
Q 000085 2018 --GSIKLLTSDGAKTL-------------------------------------------------ETASGHCAPVTCLAL 2046 (2342)
Q Consensus 2018 --GsIrVWDl~tgkll-------------------------------------------------~tL~GHt~~VtcLAf 2046 (2342)
..|++|++.+++.. ..+.+|...|.++.|
T Consensus 132 ~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~ 211 (1045)
T 1k32_A 132 SMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVI 211 (1045)
T ss_dssp TCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEE
T ss_pred ccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEE
Confidence 35777887655422 123467888999999
Q ss_pred cCCCCEEEEEeCCCceEEEeccCC-ccccccccCCCCCCccccccCCCCCceeecCCCccccccC-CceEEecC------
Q 000085 2047 SSDSNFLVTGSQDTTILLWRIHRA-FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE-GPIHVLRG------ 2118 (2342)
Q Consensus 2047 SPDG~~LaSGS~DGTVrVWDl~tg-~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~-~~l~~L~G------ 2118 (2342)
+++ .++++++.|+++.||.+... ...... ..+ ..+....++|||+.++......+..|+.. ..+..+.+
T Consensus 212 s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~-~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~ 288 (1045)
T 1k32_A 212 VGH-RIYFITDIDGFGQIYSTDLDGKDLRKH-TSF-TDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESP 288 (1045)
T ss_dssp ETT-EEEEEECTTSSCEEEEEETTSCSCEEC-CCC-CSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBC
T ss_pred eCC-EEEEEEeccCceEEEEEeCCCCcceEe-cCC-CCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCccccc
Confidence 988 67778889999999988642 222222 122 23556789999999888765555555542 22333443
Q ss_pred -----CCCCeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CcEEEEEecCCcEEEEEeCCCeEE-EEE
Q 000085 2119 -----HHREILCCCVS-SDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV---DAHAVSLSSEGVIMTWNKLQHTLS-SFT 2188 (2342)
Q Consensus 2119 -----Hs~~Vt~VafS-PDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh---~vssLSfSpDG~IlVwdssdGsI~-I~d 2188 (2342)
|...+.+++|+ |||+.+++++ ++.|.+|++.++.... +..+ .+..++|+ ||..+++...++.+. +|+
T Consensus 289 ~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d 365 (1045)
T 1k32_A 289 EDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYD 365 (1045)
T ss_dssp CSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEE
T ss_pred ccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEE
Confidence 34579999999 9999998888 7899999998887554 4333 35678899 999888887777787 888
Q ss_pred eCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEE
Q 000085 2189 LNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSIC 2268 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIr 2268 (2342)
+.+....... .|...+.+++|+|||++|++++. ++.|+
T Consensus 366 ~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~-----------------------------------------~~~v~ 403 (1045)
T 1k32_A 366 YRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVAND-----------------------------------------RFEIM 403 (1045)
T ss_dssp TTTCCEEECC-CCCCSEEEEEECTTSSEEEEEET-----------------------------------------TSEEE
T ss_pred CCCCCceEec-CCccceeeeEECCCCCEEEEECC-----------------------------------------CCeEE
Confidence 8765554444 67889999999999999998752 56799
Q ss_pred EEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCC----------cEEEEeCCCCChhhhh----hhhhccccCC
Q 000085 2269 FLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK----------QLIVFTDPALSLKVVD----QMLKLGWEGD 2334 (2342)
Q Consensus 2269 IWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG----------sIrVWDi~sLs~k~Ld----QLLk~GWegD 2334 (2342)
+||+.+++....+. +|...+.+++|||||++|++++.++ .|++||..+.....+. ......|.+|
T Consensus 404 ~~d~~tg~~~~~~~-~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spd 482 (1045)
T 1k32_A 404 TVDLETGKPTVIER-SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD 482 (1045)
T ss_dssp EEETTTCCEEEEEE-CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTT
T ss_pred EEECCCCceEEecc-CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCC
Confidence 99999999887776 7888999999999999999887654 8999997654321111 1123457777
Q ss_pred Cc
Q 000085 2335 GL 2336 (2342)
Q Consensus 2335 GL 2336 (2342)
|-
T Consensus 483 G~ 484 (1045)
T 1k32_A 483 SK 484 (1045)
T ss_dssp SC
T ss_pred CC
Confidence 73
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.75 E-value=1.3e-17 Score=220.41 Aligned_cols=279 Identities=9% Similarity=0.024 Sum_probs=195.8
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCC---CeEEEEecCCCCEEEEEeCC---------CceEEEecc
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCA---PVTCLALSSDSNFLVTGSQD---------TTILLWRIH 2068 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~---~VtcLAfSPDG~~LaSGS~D---------GTVrVWDl~ 2068 (2342)
.++|+|||+++++ +.||+|++||+.+++....+.+|.. .|.+++|||||++|++++.+ +++.+||+.
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 99 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC
Confidence 4789999998776 6899999999999998888887775 49999999999999999875 678899999
Q ss_pred CCcccccc-ccCCCCCCccccccCCCCCceeecCCCccccccC--CceEEecCCCCCe------------------EEEE
Q 000085 2069 RAFTSRTG-TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE--GPIHVLRGHHREI------------------LCCC 2127 (2342)
Q Consensus 2069 tg~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~--~~l~~L~GHs~~V------------------t~Va 2127 (2342)
++...... ...+...+..++|||||+.++......+..|+.. ........+...+ .+++
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~ 179 (723)
T 1xfd_A 100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW 179 (723)
T ss_dssp SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred CCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEE
Confidence 87642111 2223344788999999999988887666666653 3344444444333 7899
Q ss_pred EecCCCEEEEEeCCC----------------------------------cEEEEECCCCeEEEEEecC--------CcEE
Q 000085 2128 VSSDLGVVVSCSDSS----------------------------------DLLLHSIRRGRLIRRLVGV--------DAHA 2165 (2342)
Q Consensus 2128 fSPDg~lLaSGS~DG----------------------------------tIrIWDLrTGklIrsL~gh--------~vss 2165 (2342)
|+|||+.|++++.|+ +|++||+.+++....+..+ .+..
T Consensus 180 ~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~ 259 (723)
T 1xfd_A 180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM 259 (723)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred ECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEE
Confidence 999999999887653 7999999998866666543 2567
Q ss_pred EEEecCCcEEEEEeCC----CeEEEEEeCCceeeeec-CCCCCCeE----EEEEccCCCEEEEE-e-CCCCCCCCCcccc
Q 000085 2166 VSLSSEGVIMTWNKLQ----HTLSSFTLNGVLVARAK-LPLSGSIG----CMEISLDGHSALIG-V-NSSSTNNGSYDNI 2234 (2342)
Q Consensus 2166 LSfSpDG~IlVwdssd----GsI~I~dlnG~~L~s~~-~~Hs~~It----sLafSPDGk~LaSG-S-~DGs~d~~i~d~L 2234 (2342)
++|||||++++..... ..+.+|++.+....... ..+...+. +++|+|||+.|+.. + .++..
T Consensus 260 ~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~-------- 331 (723)
T 1xfd_A 260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR-------- 331 (723)
T ss_dssp EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS--------
T ss_pred EEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC--------
Confidence 9999999987654322 46888888654333222 12344443 78999999987764 2 11100
Q ss_pred cccCCCCCCccccccccccccCCCCccCCCCeEEEEE-CCCCe--EEEEEecCCCCCeEE-EEEecCCCEEEEEeCC---
Q 000085 2235 QGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLD-LHTLK--VFHVLKLGEGQDITA-LALNKDNTNLLVSTAD--- 2307 (2342)
Q Consensus 2235 w~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWD-L~Tgk--~L~tL~lgHs~~Its-LafSPDG~~LaSGSsD--- 2307 (2342)
.....|++|| ..+++ +...+. .+...+.. ++|+|||+.|+..+.+
T Consensus 332 ---------------------------~~~~~l~~~d~~~~~~~~~~~~l~-~~~~~~~~~~~~spdg~~l~~~~~~~~~ 383 (723)
T 1xfd_A 332 ---------------------------GKFYHITVSSSQPNSSNDNIQSIT-SGDWDVTKILAYDEKGNKIYFLSTEDLP 383 (723)
T ss_dssp ---------------------------SCEEEEEEECSSCCSSSCCCCBSC-CSSSCEEEEEEEETTTTEEEEEESSSCT
T ss_pred ---------------------------cceeEEEEEeccCCCCccceeEee-cCCeEEEeeeEEcCCCCEEEEEEcCCCC
Confidence 0012577787 34444 133333 23334544 6999999999876655
Q ss_pred CcEEEEeCC
Q 000085 2308 KQLIVFTDP 2316 (2342)
Q Consensus 2308 GsIrVWDi~ 2316 (2342)
+.+++|+++
T Consensus 384 ~~~~l~~~~ 392 (723)
T 1xfd_A 384 RRRQLYSAN 392 (723)
T ss_dssp TCCEEEEEC
T ss_pred cceEEEEEe
Confidence 789999964
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.74 E-value=7e-17 Score=190.58 Aligned_cols=263 Identities=10% Similarity=0.006 Sum_probs=192.2
Q ss_pred CEEEEEEcCCcEEEEecCCcccceecccCC-C-CeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccCC----C
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKTLETASGHC-A-PVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIEP----S 2081 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkll~tL~GHt-~-~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~~----~ 2081 (2342)
+++++++.++.|++||..+++.+..+.... . .+.+++|+|+|+++ ++++.++.|.+||+.++.......... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 478899999999999999998887776322 2 48899999999765 556678999999999876654442222 1
Q ss_pred CCCccccccCCCCCceeec-------------CCCccccccCC--ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2082 SGMGTPGNSIGSSTPANAS-------------ADKSRRRRIEG--PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s-------------~D~s~~~~i~~--~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrI 2146 (2342)
..+..+.++|+|+.++++. ...+..|+... ....+.. ...+.+++|+|++++++++ ++.|.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 2567889999998887663 23344455432 3334433 4567889999999988877 689999
Q ss_pred EECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCC-C-----------------------eEEEEEeCCceeeee-cCC
Q 000085 2147 HSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQ-H-----------------------TLSSFTLNGVLVARA-KLP 2200 (2342)
Q Consensus 2147 WDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssd-G-----------------------sI~I~dlnG~~L~s~-~~~ 2200 (2342)
||+.+++.+..+..+. ...+.++|||..++..... + .+.+|+.....+... ...
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 238 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238 (337)
T ss_dssp EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence 9999999988876543 2234678887644332211 1 356777654333221 122
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEE
Q 000085 2201 LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHV 2280 (2342)
Q Consensus 2201 Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~t 2280 (2342)
+...+.+++|+|||++++++ ++.|.+||+.+++.+..
T Consensus 239 ~~~~~~~~~~s~dg~~l~~~-------------------------------------------~~~v~~~d~~~~~~~~~ 275 (337)
T 1pby_B 239 MDVFYFSTAVNPAKTRAFGA-------------------------------------------YNVLESFDLEKNASIKR 275 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEE-------------------------------------------ESEEEEEETTTTEEEEE
T ss_pred CCCceeeEEECCCCCEEEEe-------------------------------------------CCeEEEEECCCCcCcce
Confidence 66788999999999999866 25699999999998888
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2281 LKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2281 L~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
+.. ...+.+++|+|||++|++++.|+.|.+||..+..
T Consensus 276 ~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 276 VPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred ecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 873 3467899999999999999999999999976553
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.74 E-value=3.9e-17 Score=216.56 Aligned_cols=241 Identities=10% Similarity=0.029 Sum_probs=185.8
Q ss_pred eeEEEEEcCCCCEEEEEEc-CC-----cEEEEecCCcccceecccCCC------------------------CeEEEEec
Q 000085 1998 SSAVVSITHDKEIITGGHV-DG-----SIKLLTSDGAKTLETASGHCA------------------------PVTCLALS 2047 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~-DG-----sIrVWDl~tgkll~tL~GHt~------------------------~VtcLAfS 2047 (2342)
.+..++|||||++|++++. |+ .|++||+.+++....+..|.. .|.+++||
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 4566999999999999998 88 899999999987776665543 38999999
Q ss_pred CCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEE
Q 000085 2048 SDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCC 2127 (2342)
Q Consensus 2048 PDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~Va 2127 (2342)
|||++|++++. ++|.+||+.++... ....+..|...+.+++
T Consensus 118 pDg~~l~~~~~-~~i~~~d~~~~~~~--------------------------------------~~~~l~~~~~~~~~~~ 158 (741)
T 2ecf_A 118 PDAQRLLFPLG-GELYLYDLKQEGKA--------------------------------------AVRQLTHGEGFATDAK 158 (741)
T ss_dssp TTSSEEEEEET-TEEEEEESSSCSTT--------------------------------------SCCBCCCSSSCEEEEE
T ss_pred CCCCEEEEEeC-CcEEEEECCCCCcc--------------------------------------eEEEcccCCccccccc
Confidence 99999999987 99999999874100 1112355677899999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC------------------cEEEEEecCCcEEEEEeCCC-------
Q 000085 2128 VSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD------------------AHAVSLSSEGVIMTWNKLQH------- 2182 (2342)
Q Consensus 2128 fSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~------------------vssLSfSpDG~IlVwdssdG------- 2182 (2342)
|+|||++|++++. +.|++||+.+++..+....+. ...++|||||+.+++...++
T Consensus 159 ~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~ 237 (741)
T 2ecf_A 159 LSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQK 237 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEE
T ss_pred CCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEe
Confidence 9999999998874 699999999988766544332 36689999999888775443
Q ss_pred --------------------------eEEEEEeCC-ceeeeecC--CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccc
Q 000085 2183 --------------------------TLSSFTLNG-VLVARAKL--PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233 (2342)
Q Consensus 2183 --------------------------sI~I~dlnG-~~L~s~~~--~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~ 2233 (2342)
.+.+|++.+ ........ .|...+.+++| |||++|++++.+..
T Consensus 238 ~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~-------- 308 (741)
T 2ecf_A 238 RYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRD-------- 308 (741)
T ss_dssp EEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETT--------
T ss_pred cCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEeccc--------
Confidence 677778766 54443332 37788999999 99999997753111
Q ss_pred ccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCC----CeEEEEEecCCCEEEEEeCCCc
Q 000085 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQ----DITALALNKDNTNLLVSTADKQ 2309 (2342)
Q Consensus 2234 Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~----~ItsLafSPDG~~LaSGSsDGs 2309 (2342)
..+..|++||+.++++...+. .+.. .+.+++|+|||+++++++.||.
T Consensus 309 ----------------------------~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~ 359 (741)
T 2ecf_A 309 ----------------------------QKKLDLVEVTLASNQQRVLAH-ETSPTWVPLHNSLRFLDDGSILWSSERTGF 359 (741)
T ss_dssp ----------------------------SSEEEEEEEETTTCCEEEEEE-EECSSCCCCCSCCEECTTSCEEEEECTTSS
T ss_pred ----------------------------CCeEEEEEEECCCCceEEEEE-cCCCCcCCcCCceEECCCCeEEEEecCCCc
Confidence 025689999999998877766 4432 4568999999999999999998
Q ss_pred EEEEeCC
Q 000085 2310 LIVFTDP 2316 (2342)
Q Consensus 2310 IrVWDi~ 2316 (2342)
+.||..+
T Consensus 360 ~~l~~~~ 366 (741)
T 2ecf_A 360 QHLYRID 366 (741)
T ss_dssp CEEEEEC
T ss_pred cEEEEEc
Confidence 8888754
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.74 E-value=8.1e-16 Score=182.76 Aligned_cols=269 Identities=12% Similarity=0.118 Sum_probs=188.3
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEc-CCcEEEEecCCccc-ceec
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHV-DGSIKLLTSDGAKT-LETA 2034 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~-DGsIrVWDl~tgkl-l~tL 2034 (2342)
+..+++.+.++.|++|+..++... ..+. .+.... .++|+|+|+++++++. ++.|++||..+++. ...+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~------~~~~---~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEIL------NQIT---LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEE------EEEE---CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred CEEEEEecCCCeEEEEeCccccee------eeEE---ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 344667778889999997663221 1111 122334 7999999996655554 89999999999988 7777
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCC---ceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCC
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDT---TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG 2111 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DG---TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~ 2111 (2342)
..+..++.+++|+|+|++|+++..++ +|.+||+.++...
T Consensus 80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~-------------------------------------- 121 (331)
T 3u4y_A 80 QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFI-------------------------------------- 121 (331)
T ss_dssp EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEE--------------------------------------
T ss_pred ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeE--------------------------------------
Confidence 77877777799999999999655553 8999999875321
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEE-EEeCCCc-EEEEECCCCeEE-----EEEe-cCCcEEEEEecCCcE-EEEEeCCC
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVV-SCSDSSD-LLLHSIRRGRLI-----RRLV-GVDAHAVSLSSEGVI-MTWNKLQH 2182 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGt-IrIWDLrTGklI-----rsL~-gh~vssLSfSpDG~I-lVwdssdG 2182 (2342)
..+.. ...+.+++|+|+|++++ ++..++. |.+|++.....+ ..+. +.....++++|||+. ++.+..++
T Consensus 122 --~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 198 (331)
T 3u4y_A 122 --STIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGN 198 (331)
T ss_dssp --EEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTT
T ss_pred --EEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCC
Confidence 11222 23458999999998554 5556688 999998754332 2222 234688999999985 45555678
Q ss_pred eEEEEEeC-Cce---eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCC
Q 000085 2183 TLSSFTLN-GVL---VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNN 2258 (2342)
Q Consensus 2183 sI~I~dln-G~~---L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~ 2258 (2342)
.+.+|++. +.. +... .....+.+++|+|||++++++..
T Consensus 199 ~v~v~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~------------------------------------ 240 (331)
T 3u4y_A 199 SIGILETQNPENITLLNAV--GTNNLPGTIVVSRDGSTVYVLTE------------------------------------ 240 (331)
T ss_dssp EEEEEECSSTTSCEEEEEE--ECSSCCCCEEECTTSSEEEEECS------------------------------------
T ss_pred eEEEEECCCCcccceeeec--cCCCCCceEEECCCCCEEEEEEc------------------------------------
Confidence 99999996 333 3322 24577889999999998876631
Q ss_pred CccCCCCeEEEEECCCCeE--EEEEecC---CCC---CeEEEEEecCCCEEEEEe-CCCcEEEEeCCCC
Q 000085 2259 RFDFPSPSICFLDLHTLKV--FHVLKLG---EGQ---DITALALNKDNTNLLVST-ADKQLIVFTDPAL 2318 (2342)
Q Consensus 2259 ~ias~DGsIrIWDL~Tgk~--L~tL~lg---Hs~---~ItsLafSPDG~~LaSGS-sDGsIrVWDi~sL 2318 (2342)
.++.|.+||+.+++. +..+... +.. ...+++|+|||++|++++ .++.|.||++...
T Consensus 241 ----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 241 ----STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp ----SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred ----CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 146799999999887 4444411 111 235689999999987665 4669999996654
No 139
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.73 E-value=1.1e-16 Score=207.77 Aligned_cols=271 Identities=13% Similarity=0.101 Sum_probs=205.6
Q ss_pred EcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEec--cCCccccccccCCC
Q 000085 2004 ITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI--HRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2004 fSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl--~tg~~i~t~~~~~~ 2081 (2342)
++|++.++++++.|++|.+||..+++++.++..+.. +.+++|+|||++|++++.|++|.+||+ .++....++. ..
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g 221 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IG 221 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CC
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cC
Confidence 678889999999999999999999999999884333 899999999999999999999999999 6665544432 34
Q ss_pred CCCccccccC----CCCCceeecC-C-Ccccccc--CCceEEecC----------CC-CCeEEEEEecCCC-EEEEEeCC
Q 000085 2082 SGMGTPGNSI----GSSTPANASA-D-KSRRRRI--EGPIHVLRG----------HH-REILCCCVSSDLG-VVVSCSDS 2141 (2342)
Q Consensus 2082 ~~V~svs~Sp----DG~~Las~s~-D-~s~~~~i--~~~l~~L~G----------Hs-~~Vt~VafSPDg~-lLaSGS~D 2141 (2342)
..+..++++| ||+.++++.. + .+..|+. .+++..+.. |. ..+.++.+++++. ++++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 4567889999 9999877763 3 3344543 344555543 22 3788999999765 55677889
Q ss_pred CcEEEEECCCCeEEE--EEec-CCcEEEEEecCCcEEEE-EeCCCeEEEEEeCCce-eeeecC---CCCCCeEEEEEccC
Q 000085 2142 SDLLLHSIRRGRLIR--RLVG-VDAHAVSLSSEGVIMTW-NKLQHTLSSFTLNGVL-VARAKL---PLSGSIGCMEISLD 2213 (2342)
Q Consensus 2142 GtIrIWDLrTGklIr--sL~g-h~vssLSfSpDG~IlVw-dssdGsI~I~dlnG~~-L~s~~~---~Hs~~ItsLafSPD 2213 (2342)
|.|.+||+.+++.+. .+.. .....++|+|||++++. +..++.|.+|+..... +..... +|.+....+ ++|+
T Consensus 302 g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~ 380 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPK 380 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETT
T ss_pred CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCC
Confidence 999999998865433 4432 33678899999996654 4567899999986433 333322 266554444 5677
Q ss_pred -CCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC-------CeEEEEEecCC
Q 000085 2214 -GHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT-------LKVFHVLKLGE 2285 (2342)
Q Consensus 2214 -Gk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T-------gk~L~tL~lgH 2285 (2342)
|..++++.. .|++|.|||+.+ +++++++. +|
T Consensus 381 ~g~~~~s~~~----------------------------------------~d~~V~v~d~~~~~~~~~~~~~v~~l~-~~ 419 (543)
T 1nir_A 381 YGPVWSTSHL----------------------------------------GDGSISLIGTDPKNHPQYAWKKVAELQ-GQ 419 (543)
T ss_dssp TEEEEEEEBS----------------------------------------SSSEEEEEECCTTTCTTTBTSEEEEEE-CS
T ss_pred CccEEEeccC----------------------------------------CCceEEEEEeCCCCCchhcCeEEEEEE-cC
Confidence 555554420 267899999998 89999999 88
Q ss_pred CCCeEEEEEecCCCEEEEEe-------CCCcEEEEeCCCCC
Q 000085 2286 GQDITALALNKDNTNLLVST-------ADKQLIVFTDPALS 2319 (2342)
Q Consensus 2286 s~~ItsLafSPDG~~LaSGS-------sDGsIrVWDi~sLs 2319 (2342)
+..+..++++||+++|++++ .+++|.|||..++.
T Consensus 420 g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 420 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 88899999999999999987 37899999988765
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.73 E-value=3.6e-16 Score=206.50 Aligned_cols=277 Identities=10% Similarity=-0.007 Sum_probs=195.5
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC-----Ccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR-----AFT 2072 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t-----g~~ 2072 (2342)
.+.+++|+|| +.++.+ .|+.|++||+.+++... +..|...+.+++|||||++|+++ .|++|.+||+.+ +..
T Consensus 83 ~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp CCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred CceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence 4677999999 655554 36999999999876544 45577789999999999999995 789999999988 654
Q ss_pred ccccccCCC-------------CCCccccccCCCCCceeecCC----------------------------------Ccc
Q 000085 2073 SRTGTIEPS-------------SGMGTPGNSIGSSTPANASAD----------------------------------KSR 2105 (2342)
Q Consensus 2073 i~t~~~~~~-------------~~V~svs~SpDG~~Las~s~D----------------------------------~s~ 2105 (2342)
......... ..+..+.|+|||+.++....+ .+.
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 332211111 124788999999999877521 122
Q ss_pred ccccCCc-eEEe---cCCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCCCeEEEEEe-c-CC-----cEEEEEe
Q 000085 2106 RRRIEGP-IHVL---RGHHREILCCCVSSDLGVVVSCSDSS-----DLLLHSIRRGRLIRRLV-G-VD-----AHAVSLS 2169 (2342)
Q Consensus 2106 ~~~i~~~-l~~L---~GHs~~Vt~VafSPDg~lLaSGS~DG-----tIrIWDLrTGklIrsL~-g-h~-----vssLSfS 2169 (2342)
.|+.... ...+ ..|...+.+++|+|||+.|++++.|+ .|++||+.+++....+. . +. ...++|+
T Consensus 239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s 318 (706)
T 2z3z_A 239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFL 318 (706)
T ss_dssp EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceee
Confidence 3443221 1122 25677899999999999999988776 99999999994444332 1 11 2467999
Q ss_pred c--CCcEEEEEeCCCeEEEEEeC--CceeeeecCCCCCCeEE-EEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc
Q 000085 2170 S--EGVIMTWNKLQHTLSSFTLN--GVLVARAKLPLSGSIGC-MEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT 2244 (2342)
Q Consensus 2170 p--DG~IlVwdssdGsI~I~dln--G~~L~s~~~~Hs~~Its-LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ 2244 (2342)
| ||++++....++.+++|.++ +..+.. ...|...+.+ ++|+|||+.|+.++.+..
T Consensus 319 p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~-l~~~~~~v~~~~~~spdg~~l~~~~~~~~------------------- 378 (706)
T 2z3z_A 319 PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ-VTKGEWEVTNFAGFDPKGTRLYFESTEAS------------------- 378 (706)
T ss_dssp TTCSSEEEEEECTTSSCEEEEEETTSCEEEE-CCCSSSCEEEEEEECTTSSEEEEEESSSC-------------------
T ss_pred cCCCCEEEEEEccCCccEEEEEECCCCEEEe-cCCCCeEEEeeeEEcCCCCEEEEEecCCC-------------------
Confidence 9 99988777778877888764 444433 3346677876 799999998887652211
Q ss_pred cccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEeCCCC
Q 000085 2245 EDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD----KQLIVFTDPAL 2318 (2342)
Q Consensus 2245 iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD----GsIrVWDi~sL 2318 (2342)
.....|+.||+.+++ ...+ .|...+.+++|+|||++|+.++.+ +.|++|+..+.
T Consensus 379 -----------------~~~~~l~~~d~~~~~-~~~l--~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 379 -----------------PLERHFYCIDIKGGK-TKDL--TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp -----------------TTCBEEEEEETTCCC-CEES--CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred -----------------CceEEEEEEEcCCCC-ceec--cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 002368888888776 3333 367789999999999998876443 56999997554
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.73 E-value=3e-16 Score=217.82 Aligned_cols=343 Identities=12% Similarity=0.047 Sum_probs=229.9
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
|..+..+++++.++.+++|....... ....+..+. .+.+.+|+|||+.|+++ .++.|++|++...+ +..
T Consensus 211 ~s~d~l~~~~~~dg~~~l~~~~~~g~-----~~~~l~~~~----~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~ 279 (1045)
T 1k32_A 211 IVGHRIYFITDIDGFGQIYSTDLDGK-----DLRKHTSFT----DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEK 279 (1045)
T ss_dssp EETTEEEEEECTTSSCEEEEEETTSC-----SCEECCCCC----SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEE
T ss_pred EeCCEEEEEEeccCceEEEEEeCCCC-----cceEecCCC----CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eee
Confidence 33344555666777888886432100 111222222 23347999999988887 49999999995443 335
Q ss_pred ccc-----------CCCCeEEEEec-CCCCEEEEEeCCCceEEEeccCCccccccccCCCC-CCccccccCCCCCceeec
Q 000085 2034 ASG-----------HCAPVTCLALS-SDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSS-GMGTPGNSIGSSTPANAS 2100 (2342)
Q Consensus 2034 L~G-----------Ht~~VtcLAfS-PDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~-~V~svs~SpDG~~Las~s 2100 (2342)
+.+ |...|.+++|+ |||++|++++ ++.|.+|++.++.... ...+.. .+..+.|+ ||+.++...
T Consensus 280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~s-dg~~l~~~s 355 (1045)
T 1k32_A 280 IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK--VPEPLRIRYVRRGGD-TKVAFIHGT 355 (1045)
T ss_dssp CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE--CSCCSCEEEEEECSS-SEEEEEEEE
T ss_pred eccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE--ccCCCcceEEeeeEc-CCCeEEEEE
Confidence 554 45579999999 9999999988 8899999998764322 223344 67788899 998887766
Q ss_pred CCC-cc-cccc-CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEE
Q 000085 2101 ADK-SR-RRRI-EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIM 2175 (2342)
Q Consensus 2101 ~D~-s~-~~~i-~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~Il 2175 (2342)
.+. .. .++. ......+.+|...+.+++|+|||++|++++.|+.|++||+.+++....+.+|. +..++|||||+.+
T Consensus 356 ~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~l 435 (1045)
T 1k32_A 356 REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFI 435 (1045)
T ss_dssp TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeE
Confidence 532 22 2333 23344555888899999999999999999999999999999999888776654 5789999999998
Q ss_pred EEEeCC----------CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc---c-------c--
Q 000085 2176 TWNKLQ----------HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY---D-------N-- 2233 (2342)
Q Consensus 2176 Vwdssd----------GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~---d-------~-- 2233 (2342)
++...+ +.+++|++.+..+. ....|...+.+++|+|||++|+.++.++....+.. + .
T Consensus 436 a~~~~~~~~~~~~~~~~~i~l~d~~~g~~~-~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1045)
T 1k32_A 436 AYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF 514 (1045)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEE
T ss_pred EEEecCccccccCCCCCeEEEEECCCCcEE-EeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeE
Confidence 887654 38999999865533 33447788999999999999998886443211100 0 0
Q ss_pred ------------------------ccccCCC------------CCCccccccccccccCCC---------CccCCCCeEE
Q 000085 2234 ------------------------IQGLNSK------------QSGTEDFDLASDQSVDNN---------RFDFPSPSIC 2268 (2342)
Q Consensus 2234 ------------------------Lw~l~~~------------~~~~iaFspd~~~s~ss~---------~ias~DGsIr 2268 (2342)
.+++... ....+.++++........ ........|.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~ 594 (1045)
T 1k32_A 515 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLL 594 (1045)
T ss_dssp EEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEE
T ss_pred EEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEE
Confidence 0111110 001112233221111000 0011255788
Q ss_pred EEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2269 FLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2269 IWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
+||+.+++... +. ..+.+++|||||++|++++.| .|++|+....
T Consensus 595 ~~d~~~~~~~~-l~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~ 638 (1045)
T 1k32_A 595 KYDVKTRKVTE-VK----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEK 638 (1045)
T ss_dssp EEETTTCCEEE-EE----EEEEEEEECTTSCEEEEEETT-SCEEEEESSC
T ss_pred EEECCCCcEEE-ee----cCcceEEECCCCCEEEEEcCC-cEEEEeCccC
Confidence 89998887532 22 468899999999999999877 8999997544
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.72 E-value=7.2e-16 Score=183.19 Aligned_cols=235 Identities=14% Similarity=0.152 Sum_probs=177.1
Q ss_pred EEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC-CCceEEEeccCCccccccccCC
Q 000085 2003 SITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTGTIEP 2080 (2342)
Q Consensus 2003 afSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~~~~~ 2080 (2342)
.|.++++ ++++++.++.|++||..+++.+..+..+...+ +++|+|+|+++++++. +++|.+||..++..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-------- 74 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-------- 74 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--------
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--------
Confidence 3455555 57788899999999999999988887777777 9999999997776665 89999999987521
Q ss_pred CCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEECCCCeEEEE
Q 000085 2081 SSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSS---DLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2081 ~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG---tIrIWDLrTGklIrs 2157 (2342)
....+..+..+..+++|+|++++++++..++ .|.+||+.+++.+..
T Consensus 75 -------------------------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~ 123 (331)
T 3u4y_A 75 -------------------------------KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST 123 (331)
T ss_dssp -------------------------------EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred -------------------------------eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE
Confidence 0223344555555599999999999655553 899999999999888
Q ss_pred EecC-CcEEEEEecCCc-EEEEEeCCCe-EEEEEeCC--ceee--eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCC
Q 000085 2158 LVGV-DAHAVSLSSEGV-IMTWNKLQHT-LSSFTLNG--VLVA--RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGS 2230 (2342)
Q Consensus 2158 L~gh-~vssLSfSpDG~-IlVwdssdGs-I~I~dlnG--~~L~--s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i 2230 (2342)
+..+ ....++++|||+ +++.+..++. +.+|+++. .... .........+.+++|+|||+++++++.
T Consensus 124 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-------- 195 (331)
T 3u4y_A 124 IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL-------- 195 (331)
T ss_dssp EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET--------
T ss_pred EECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC--------
Confidence 8654 468899999997 5555566677 99999863 1111 111234566899999999998776641
Q ss_pred cccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE---EEEEecCCCCCeEEEEEecCCCEEEEEe-C
Q 000085 2231 YDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV---FHVLKLGEGQDITALALNKDNTNLLVST-A 2306 (2342)
Q Consensus 2231 ~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~---L~tL~lgHs~~ItsLafSPDG~~LaSGS-s 2306 (2342)
.++.|.+||+.+++. +..+. +...+.+++|+|||++|++++ .
T Consensus 196 --------------------------------~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~ 241 (331)
T 3u4y_A 196 --------------------------------IGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTES 241 (331)
T ss_dssp --------------------------------TTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSS
T ss_pred --------------------------------CCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcC
Confidence 157899999999887 77776 346788999999999877665 5
Q ss_pred CCcEEEEeCCCCC
Q 000085 2307 DKQLIVFTDPALS 2319 (2342)
Q Consensus 2307 DGsIrVWDi~sLs 2319 (2342)
++.|.+||..+..
T Consensus 242 ~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 242 TVDVFNFNQLSGT 254 (331)
T ss_dssp EEEEEEEETTTTE
T ss_pred CCEEEEEECCCCc
Confidence 7889999976543
No 143
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=4.8e-16 Score=184.72 Aligned_cols=259 Identities=10% Similarity=0.057 Sum_probs=191.0
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCC-CCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC-APVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt-~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
++++++++++++++.++.|++||..+++.+..+..+. ..+..++|+|+|+++ ++++.+++|.+||+.++.........
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 4678888999999999999999999998888776543 257899999999865 45567899999999887655443222
Q ss_pred C-----CCCCccccccCCCCCceeecC-------------CCccccccCC-----ceEEecCCCCCeEEEEEecCCCEEE
Q 000085 2080 P-----SSGMGTPGNSIGSSTPANASA-------------DKSRRRRIEG-----PIHVLRGHHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2080 ~-----~~~V~svs~SpDG~~Las~s~-------------D~s~~~~i~~-----~l~~L~GHs~~Vt~VafSPDg~lLa 2136 (2342)
. ...+..+.++|+|+.++++.. ..+..|+... .+..+. +...+.+++|+|+++ ++
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EE
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EE
Confidence 2 223678899999998877763 3334454422 223333 344688999999999 55
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecCC--------------------------cEEEEEecCC-----------cEEEEEe
Q 000085 2137 SCSDSSDLLLHSIRRGRLIRRLVGVD--------------------------AHAVSLSSEG-----------VIMTWNK 2179 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrTGklIrsL~gh~--------------------------vssLSfSpDG-----------~IlVwds 2179 (2342)
.++. .|.+||+.+++.+..+..+. ...+++++++ .++.++.
T Consensus 163 ~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 240 (349)
T 1jmx_B 163 VAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 240 (349)
T ss_dssp EESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred EccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec
Confidence 5544 49999999999888776431 2335666544 2333666
Q ss_pred CCCeEEEEEeCCceeeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCC
Q 000085 2180 LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISL-DGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNN 2258 (2342)
Q Consensus 2180 sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP-DGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~ 2258 (2342)
.++.+..+++.. +...+.+++|+| ||++++++
T Consensus 241 ~~~~~~~~~~~~---------~~~~~~~~~~sp~dg~~l~~~-------------------------------------- 273 (349)
T 1jmx_B 241 KTGKTHTQEFAD---------LTELYFTGLRSPKDPNQIYGV-------------------------------------- 273 (349)
T ss_dssp TTCCEEEEEEEE---------CSSCEEEEEECSSCTTEEEEE--------------------------------------
T ss_pred cCCcEEeccccc---------CCCcceeeEecCCCCCEEEEE--------------------------------------
Confidence 677777776632 456788999999 99998866
Q ss_pred CccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2259 RFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2259 ~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|.+||..+.
T Consensus 274 -----~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 274 -----LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp -----ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred -----cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 24699999999998888873 345789999999999999999999999997654
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.71 E-value=1.8e-16 Score=209.34 Aligned_cols=303 Identities=10% Similarity=-0.031 Sum_probs=197.4
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcC---------CcEEEEec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVD---------GSIKLLTS 2025 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~D---------GsIrVWDl 2025 (2342)
++|+.+++ +.|+++++|+..++... ..+..+......+..++|||||++|++++.+ +.|++||+
T Consensus 26 pdg~~~~~-~~dg~i~~~d~~~g~~~------~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~ 98 (723)
T 1xfd_A 26 SDTEFIYR-EQKGTVRLWNVETNTST------VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI 98 (723)
T ss_dssp SSSCBCCC-CSSSCEEEBCGGGCCCE------EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred CCCcEEEE-eCCCCEEEEECCCCcEE------EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC
Confidence 45665555 56789999997663221 1111222110125569999999999998764 78889999
Q ss_pred CCccc--ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCC------------------CCc
Q 000085 2026 DGAKT--LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSS------------------GMG 2085 (2342)
Q Consensus 2026 ~tgkl--l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~------------------~V~ 2085 (2342)
.+++. +....+|...|.+++|||||++|++++. ++|.+||+.++....... .+.. .+.
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~~~~~~ 176 (723)
T 1xfd_A 99 PHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEILKTHI 176 (723)
T ss_dssp SSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred CCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEEeccCcc
Confidence 99876 3333456667999999999999999986 799999998865433221 1111 236
Q ss_pred cccccCCCCCceeecCCC-----------------------------------ccccccC--CceEEecCC------CCC
Q 000085 2086 TPGNSIGSSTPANASADK-----------------------------------SRRRRIE--GPIHVLRGH------HRE 2122 (2342)
Q Consensus 2086 svs~SpDG~~Las~s~D~-----------------------------------s~~~~i~--~~l~~L~GH------s~~ 2122 (2342)
.+.|+|||+.++....+. +..|+.. .....+..| ...
T Consensus 177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~ 256 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY 256 (723)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccce
Confidence 789999999987765432 1223332 222444443 567
Q ss_pred eEEEEEecCCCEEEEEeC----CCcEEEEECCCCeEEEEEecC-C--c----EEEEEecCCcEEEE--EeCCC------e
Q 000085 2123 ILCCCVSSDLGVVVSCSD----SSDLLLHSIRRGRLIRRLVGV-D--A----HAVSLSSEGVIMTW--NKLQH------T 2183 (2342)
Q Consensus 2123 Vt~VafSPDg~lLaSGS~----DGtIrIWDLrTGklIrsL~gh-~--v----ssLSfSpDG~IlVw--dssdG------s 2183 (2342)
+.+++|+|||+++++.+. +..|++||+.++++...+..+ . + ..++|+|||+.+++ ...++ .
T Consensus 257 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 336 (723)
T 1xfd_A 257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (723)
T ss_dssp EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE
Confidence 899999999998877653 357999999999887766432 2 1 37899999996665 34556 4
Q ss_pred EEEEE-eCCce---eeeecCCCCCCeEE-EEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCC
Q 000085 2184 LSSFT-LNGVL---VARAKLPLSGSIGC-MEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNN 2258 (2342)
Q Consensus 2184 I~I~d-lnG~~---L~s~~~~Hs~~Its-LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~ 2258 (2342)
+.+|+ ..+.. .... ..+...+.. ++|+|||+.|+..+.+..
T Consensus 337 l~~~d~~~~~~~~~~~~l-~~~~~~~~~~~~~spdg~~l~~~~~~~~--------------------------------- 382 (723)
T 1xfd_A 337 ITVSSSQPNSSNDNIQSI-TSGDWDVTKILAYDEKGNKIYFLSTEDL--------------------------------- 382 (723)
T ss_dssp EEEECSSCCSSSCCCCBS-CCSSSCEEEEEEEETTTTEEEEEESSSC---------------------------------
T ss_pred EEEEeccCCCCccceeEe-ecCCeEEEeeeEEcCCCCEEEEEEcCCC---------------------------------
Confidence 55666 33433 2222 223344554 699999999986653211
Q ss_pred CccCCCCeEEEEECCCC--eEEEEEecC--CCCCeEEEEEecCCCEEEEEe
Q 000085 2259 RFDFPSPSICFLDLHTL--KVFHVLKLG--EGQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2259 ~ias~DGsIrIWDL~Tg--k~L~tL~lg--Hs~~ItsLafSPDG~~LaSGS 2305 (2342)
.+.+++|++... .....+... |...+..++|+|||++|+...
T Consensus 383 -----~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 383 -----PRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp -----TTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred -----CcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 134566666432 122223211 566789999999999888653
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.71 E-value=1.5e-15 Score=181.02 Aligned_cols=263 Identities=9% Similarity=0.034 Sum_probs=196.7
Q ss_pred EEEEEcCCCCEEEEEEc-------CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCc
Q 000085 2000 AVVSITHDKEIITGGHV-------DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~-------DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~ 2071 (2342)
..++|+|+|+++++++. ++.|.+||..+++.+..+... ..+.+++|+|+|++++ ++..+++|.+||..++.
T Consensus 44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 122 (353)
T 3vgz_A 44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGE 122 (353)
T ss_dssp EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCC
T ss_pred cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCe
Confidence 45899999998777764 568999999999888877643 4478899999999554 55668999999999877
Q ss_pred cccccccCCCC--------CCccccccCCCCCceeecC--CC-ccccccC--CceEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2072 TSRTGTIEPSS--------GMGTPGNSIGSSTPANASA--DK-SRRRRIE--GPIHVLRGHHREILCCCVSSDLGVVVSC 2138 (2342)
Q Consensus 2072 ~i~t~~~~~~~--------~V~svs~SpDG~~Las~s~--D~-s~~~~i~--~~l~~L~GHs~~Vt~VafSPDg~lLaSG 2138 (2342)
........... .+..+.++|+|+.+++... ++ +..++.. +....+..+...+.+++|+|++++++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 202 (353)
T 3vgz_A 123 VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTT 202 (353)
T ss_dssp EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEE
T ss_pred eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEE
Confidence 65544222111 2466899999997766552 22 4445543 3445555566678999999999999999
Q ss_pred eCCCcEEEEECCCCeEEEEEec----C--CcEEEEEecCCcEEEEE-eCCCeEEEEEeC-CceeeeecCCCCCCeEEEEE
Q 000085 2139 SDSSDLLLHSIRRGRLIRRLVG----V--DAHAVSLSSEGVIMTWN-KLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEI 2210 (2342)
Q Consensus 2139 S~DGtIrIWDLrTGklIrsL~g----h--~vssLSfSpDG~IlVwd-ssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLaf 2210 (2342)
+.++.|.+||+.+++.+..+.. + ....++++++|..++.. ..++.+.+|+.. +..+.....+. ..+++|
T Consensus 203 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 279 (353)
T 3vgz_A 203 NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLF 279 (353)
T ss_dssp CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEE
T ss_pred cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEE
Confidence 9999999999999999888764 2 24568999999865554 445899999986 44444333222 357999
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeE
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDIT 2290 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~It 2290 (2342)
+|+|++++++.. .++.|.+||..+++.+..+. ....+.
T Consensus 280 s~dg~~l~v~~~----------------------------------------~~~~v~~~d~~~~~~~~~~~--~~~~~~ 317 (353)
T 3vgz_A 280 NPARNEAYVTHR----------------------------------------QAGKVSVIDAKSYKVVKTFD--TPTHPN 317 (353)
T ss_dssp ETTTTEEEEEET----------------------------------------TTTEEEEEETTTTEEEEEEE--CCSEEE
T ss_pred CCCCCEEEEEEC----------------------------------------CCCeEEEEECCCCeEEEEEe--cCCCCC
Confidence 999998776641 15789999999999988887 344789
Q ss_pred EEEEecCCCEEEEEeCCC
Q 000085 2291 ALALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2291 sLafSPDG~~LaSGSsDG 2308 (2342)
+++|+|||++|+++..++
T Consensus 318 ~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 318 SLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEECTTSCEEEEEEECC
T ss_pred eEEEcCCCCEEEEEEccc
Confidence 999999999888776553
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.69 E-value=6.5e-16 Score=177.46 Aligned_cols=249 Identities=12% Similarity=0.026 Sum_probs=179.1
Q ss_pred cCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC-cccceecccC-CCC
Q 000085 1963 PASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG-AKTLETASGH-CAP 2040 (2342)
Q Consensus 1963 sSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t-gkll~tL~GH-t~~ 2040 (2342)
.+.++.+++|+..++. ...+..+. ..+.+++|+|+|++|++++ ++.|++||+.+ ++......+| ...
T Consensus 18 ~~~~~~i~~~d~~~~~-------~~~~~~~~---~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRK-------MRVVWQTP---ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATIC 86 (297)
T ss_dssp CCCCEEEEEEETTTTE-------EEEEEEES---SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCB
T ss_pred CCcceeEEEEeCCCCc-------eeeeccCC---cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccccc
Confidence 4567899999866521 11122233 3456799999999999986 88999999999 8877777666 478
Q ss_pred eEEEEecCCCCEEEEEe--CCCceEEEeccCCccccccccCCCCCCccccccCCCCCce-eecCCCc-cccc--c-CCce
Q 000085 2041 VTCLALSSDSNFLVTGS--QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPA-NASADKS-RRRR--I-EGPI 2113 (2342)
Q Consensus 2041 VtcLAfSPDG~~LaSGS--~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~La-s~s~D~s-~~~~--i-~~~l 2113 (2342)
|.+++|+|+|++|++++ .++.+.||.+......... ......+..+.++|+++.++ +...++. ..|. . ....
T Consensus 87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-MTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-CCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE-eecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc
Confidence 99999999999999999 4467777776532211111 11222367788999999876 4444432 3343 2 3456
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECC-CCeEEEEEecCC--cEEEEEecCCcEEEEEeCC--------
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIR-RGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQ-------- 2181 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLr-TGklIrsL~gh~--vssLSfSpDG~IlVwdssd-------- 2181 (2342)
..+..|...+.+++|+|+++.++.++ .|+.+.+|++. .+..+..+..+. +..++|+|+|+.+++...+
T Consensus 166 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 166 TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 67778889999999999999887666 59999999986 555666666544 5678999999988877654
Q ss_pred ---CeEEEEEeCCceeeeec--CCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2182 ---HTLSSFTLNGVLVARAK--LPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2182 ---GsI~I~dlnG~~L~s~~--~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
+.+.+|++.+....... ..|...+.+++|+|+|++|++++.+
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred cCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 46899998754332222 2478889999999999999988744
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.69 E-value=3e-15 Score=179.90 Aligned_cols=248 Identities=14% Similarity=0.210 Sum_probs=171.5
Q ss_pred eEEEEEcCCCCEEEEEEc--CCcEEEEecCCcc--cceecccCCCCeEEEEecCCCCEEEEEe-CCCceEEEeccCCccc
Q 000085 1999 SAVVSITHDKEIITGGHV--DGSIKLLTSDGAK--TLETASGHCAPVTCLALSSDSNFLVTGS-QDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~--DGsIrVWDl~tgk--ll~tL~GHt~~VtcLAfSPDG~~LaSGS-~DGTVrVWDl~tg~~i 2073 (2342)
...++|+|||++++++.. ++.|++|++.+++ .+..+..|...+.+++|+|||++|++++ .+++|.+|++......
T Consensus 42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred cceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 345999999994444432 6899999998765 4445556788899999999999998888 7899999999642111
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR-RG 2152 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr-TG 2152 (2342)
.... .....+ ..+. ...+...+.+++|+|+|++++++..++.|.+||+. ++
T Consensus 122 ~~~~--------------------~~~~~~------~~p~--~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 122 TLTD--------------------TVQHSG------HGPR--PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp EEEE--------------------EEECCC------CCSS--TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred eecc--------------------eeecCC------CCCC--ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 1000 000000 0000 11234568899999999977777788999999998 56
Q ss_pred eEEE--EEec---CCcEEEEEecCCcEE-EEEeCCCeEEEEEeCC--ceee---eec-CCC----CCCeEEEEEccCCCE
Q 000085 2153 RLIR--RLVG---VDAHAVSLSSEGVIM-TWNKLQHTLSSFTLNG--VLVA---RAK-LPL----SGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2153 klIr--sL~g---h~vssLSfSpDG~Il-VwdssdGsI~I~dlnG--~~L~---s~~-~~H----s~~ItsLafSPDGk~ 2216 (2342)
+... .+.. .....++|+|||+.+ +.+..++.+.+|+++. ..+. ... .+. ...+..++|+|||++
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 5432 2222 246789999999954 4466778999999863 2221 111 111 145889999999998
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC---CCeEEEEEecCCCCCeEEEE
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH---TLKVFHVLKLGEGQDITALA 2293 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~---Tgk~L~tL~lgHs~~ItsLa 2293 (2342)
|+++.. .++.|.+||+. +.+.+..+. .+...+.+++
T Consensus 254 l~v~~~----------------------------------------~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~ 292 (347)
T 3hfq_A 254 LYVSNR----------------------------------------GYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFD 292 (347)
T ss_dssp EEEEEE----------------------------------------TTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEE
T ss_pred EEEEeC----------------------------------------CCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEE
Confidence 865531 15679999987 335666666 5666789999
Q ss_pred EecCCCEEEEEeCC-CcEEEEeC
Q 000085 2294 LNKDNTNLLVSTAD-KQLIVFTD 2315 (2342)
Q Consensus 2294 fSPDG~~LaSGSsD-GsIrVWDi 2315 (2342)
|+|||++|++++.+ +.|.+|+.
T Consensus 293 ~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 293 LDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEE
T ss_pred ECCCCCEEEEEEcCCCcEEEEEE
Confidence 99999999888765 89999964
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.67 E-value=1e-15 Score=198.21 Aligned_cols=265 Identities=10% Similarity=0.028 Sum_probs=191.0
Q ss_pred eeEEEEEcCCCCEEEEEEc-CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC---CCceEEEeccC--Cc
Q 000085 1998 SSAVVSITHDKEIITGGHV-DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ---DTTILLWRIHR--AF 2071 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~-DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~---DGTVrVWDl~t--g~ 2071 (2342)
.+.+++|+|||+.||+++. ||+++||++++++..+....|...|.+++|+|| +++++++. +....+|.+.. ..
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g 101 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG 101 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC
Confidence 3667999999999998876 999999999776655444334368999999999 88888776 56667776654 22
Q ss_pred cccccccCCCCCCccccccCCCCCc--eeecCCCccccccCC-ceEEecCCCCCeEEEEEecCCCEEEEEeCC----CcE
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTP--ANASADKSRRRRIEG-PIHVLRGHHREILCCCVSSDLGVVVSCSDS----SDL 2144 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~L--as~s~D~s~~~~i~~-~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D----GtI 2144 (2342)
..... .........+++|+|+.+ ++...+....|+... ....+..+.. .+++|+|||+++++++.| +.|
T Consensus 102 ~~~~l--~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i 177 (582)
T 3o4h_A 102 EEQRL--EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSL 177 (582)
T ss_dssp CCEEC--TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEE
T ss_pred ccccc--cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEE
Confidence 22222 112233456788888654 444555555666532 2333333333 889999999999988877 789
Q ss_pred EEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCC--eEEEEEeCCceeeeecCCCCCCeEEEE--------Ecc
Q 000085 2145 LLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQH--TLSSFTLNGVLVARAKLPLSGSIGCME--------ISL 2212 (2342)
Q Consensus 2145 rIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdG--sI~I~dlnG~~L~s~~~~Hs~~ItsLa--------fSP 2212 (2342)
++||+.+++.. .+..+. +..++|||||+.++....++ .|++|++.+.... ....|...+.+++ |+|
T Consensus 178 ~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sp 255 (582)
T 3o4h_A 178 FTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLP 255 (582)
T ss_dssp EEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECT
T ss_pred EEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcC
Confidence 99999988765 555543 57899999999988777777 7889998765555 4444777777777 999
Q ss_pred CCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEE
Q 000085 2213 DGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITAL 2292 (2342)
Q Consensus 2213 DGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsL 2292 (2342)
||.++++++. |+.+++|++ ++... .....|.++
T Consensus 256 dg~~~~~~~~-----------------------------------------~g~~~l~~~--g~~~~----~~~~~v~~~ 288 (582)
T 3o4h_A 256 DGRLAVVARR-----------------------------------------EGRSAVFID--GERVE----APQGNHGRV 288 (582)
T ss_dssp TSCEEEEEEE-----------------------------------------TTEEEEEET--TEEEC----CCSSEEEEE
T ss_pred CCcEEEEEEc-----------------------------------------CCcEEEEEE--CCeec----cCCCceEEE
Confidence 9977776652 678999999 66544 234678999
Q ss_pred EEecCCCEEEEEeCCC---cEEEEeCCC
Q 000085 2293 ALNKDNTNLLVSTADK---QLIVFTDPA 2317 (2342)
Q Consensus 2293 afSPDG~~LaSGSsDG---sIrVWDi~s 2317 (2342)
+|+ +++.+++++.+. .|.+|+..+
T Consensus 289 ~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 289 VLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred Eec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 999 999999888775 477777543
No 149
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.63 E-value=1.1e-14 Score=183.65 Aligned_cols=193 Identities=11% Similarity=0.095 Sum_probs=145.8
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCccc----------ce-----ecccCCCCeEEEEecCCCCEEE----EEeCC
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKT----------LE-----TASGHCAPVTCLALSSDSNFLV----TGSQD 2059 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkl----------l~-----tL~GHt~~VtcLAfSPDG~~La----SGS~D 2059 (2342)
++++++++++.++++|+.|+ ++||+...... +. ....|...|++++|+|+|++|+ +|+.|
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 45699999999999999888 89987542110 00 1123567899999999999999 88999
Q ss_pred CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEE
Q 000085 2060 TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSC 2138 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSG 2138 (2342)
++|+|||+.+....... ..........+.+|...|++++|+|+ +.++++|
T Consensus 118 ~~v~iwd~~~~~~~~~~-----------------------------~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQ-----------------------------QKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp EEEEEEEHHHHHCTTCS-----------------------------SCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred ceEEEEEccccccCCcC-----------------------------CcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 99999999764100000 00000123456789999999999998 8899999
Q ss_pred eCCCcEEEEECCCCeEEEEEecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC------CCCCeEEEEE
Q 000085 2139 SDSSDLLLHSIRRGRLIRRLVGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP------LSGSIGCMEI 2210 (2342)
Q Consensus 2139 S~DGtIrIWDLrTGklIrsL~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~------Hs~~ItsLaf 2210 (2342)
+.||+|++||++++..+....+| .+..++|+|+|..++.+..+|.|++|+..+......... |...|.+++|
T Consensus 169 s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w 248 (434)
T 2oit_A 169 LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLW 248 (434)
T ss_dssp ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEE
T ss_pred ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEE
Confidence 99999999999999777666655 488999999999999999999999999985544332211 2348999999
Q ss_pred ccCCCEEEEEe
Q 000085 2211 SLDGHSALIGV 2221 (2342)
Q Consensus 2211 SPDGk~LaSGS 2221 (2342)
++++.++++.+
T Consensus 249 ~~~~~~l~~~~ 259 (434)
T 2oit_A 249 IGTYVFAIVYA 259 (434)
T ss_dssp EETTEEEEEEE
T ss_pred ecCceEEEEEc
Confidence 99998887543
No 150
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=201.69 Aligned_cols=273 Identities=12% Similarity=0.074 Sum_probs=190.9
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCC---CeEEEEecCCCCEEEEEeC---------CCceEEEecc
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCA---PVTCLALSSDSNFLVTGSQ---------DTTILLWRIH 2068 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~---~VtcLAfSPDG~~LaSGS~---------DGTVrVWDl~ 2068 (2342)
.++|+|||++++++ .|++|++||+.+++....+.+|.. .|.+++|||||++|++++. |++|++||+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 37899999766655 699999999999988777776654 4899999999999999876 7999999999
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccC--CceEEe-cCCCCCe-----------------EEEEE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE--GPIHVL-RGHHREI-----------------LCCCV 2128 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~--~~l~~L-~GHs~~V-----------------t~Vaf 2128 (2342)
++...... .....+..++|||||+.++....+.+..|+.. ...... .++...| .+++|
T Consensus 99 ~g~~~~~~--~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 99 NGEFVRGN--ELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp TTEECCSS--CCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred CCccccce--ecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 87652111 11245788999999999988876666666652 222211 2232222 48999
Q ss_pred ecCCCEEEEEeCCC----------------------------------cEEEEECCCCeEE--EEE------ecCC--cE
Q 000085 2129 SSDLGVVVSCSDSS----------------------------------DLLLHSIRRGRLI--RRL------VGVD--AH 2164 (2342)
Q Consensus 2129 SPDg~lLaSGS~DG----------------------------------tIrIWDLrTGklI--rsL------~gh~--vs 2164 (2342)
+|||+.|++++.|. .|++||+.+++.+ ..+ .++. +.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 99999999988653 7889999888652 122 1232 57
Q ss_pred EEEEecCCcEEEEEeC--C--CeEEEEE----eCCceeeeec----CCCCCCeE-----EEEEccCCCEEEEEeCCCCCC
Q 000085 2165 AVSLSSEGVIMTWNKL--Q--HTLSSFT----LNGVLVARAK----LPLSGSIG-----CMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2165 sLSfSpDG~IlVwdss--d--GsI~I~d----lnG~~L~s~~----~~Hs~~It-----sLafSPDGk~LaSGS~DGs~d 2227 (2342)
.++|||||++++.... . ..|.+|+ ..+....... ..|...+. ++.|+|||+.++..+.+..
T Consensus 257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-- 334 (719)
T 1z68_A 257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD-- 334 (719)
T ss_dssp EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT--
T ss_pred EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC--
Confidence 8899999987765322 2 2477788 6544433333 24666676 8899999997665321111
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
....|.+||+.+++ ...+. .+...+..+.++ +++.|+..+.+
T Consensus 335 -----------------------------------g~~~l~~~~~~~~~-~~~lt-~~~~~v~~~~~~-d~~~i~~~~~~ 376 (719)
T 1z68_A 335 -----------------------------------GYKHIHYIKDTVEN-AIQIT-SGKWEAINIFRV-TQDSLFYSSNE 376 (719)
T ss_dssp -----------------------------------SCEEEEEESSCSTT-CEECS-CSSSCEEEEEEE-CSSEEEEEESC
T ss_pred -----------------------------------CceEEEEEECCCCc-eEecc-cCceEEEEEEEE-eCCEEEEEEec
Confidence 02468888988776 34444 455668888888 88888877665
Q ss_pred -----CcEEEEeCC
Q 000085 2308 -----KQLIVFTDP 2316 (2342)
Q Consensus 2308 -----GsIrVWDi~ 2316 (2342)
+.+.+|.++
T Consensus 377 ~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 377 FEEYPGRRNIYRIS 390 (719)
T ss_dssp GGGCTTCBEEEEEE
T ss_pred CCCCCceEEEEEEe
Confidence 889999854
No 151
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.62 E-value=3.2e-14 Score=168.34 Aligned_cols=227 Identities=11% Similarity=0.101 Sum_probs=161.0
Q ss_pred EEEEEEcCCcEEEEecC-Ccc--cceecccCCCCeEEEEecCCCCEEEEEeCC-CceEEEecc--CCccccccccCCCCC
Q 000085 2010 IITGGHVDGSIKLLTSD-GAK--TLETASGHCAPVTCLALSSDSNFLVTGSQD-TTILLWRIH--RAFTSRTGTIEPSSG 2083 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~-tgk--ll~tL~GHt~~VtcLAfSPDG~~LaSGS~D-GTVrVWDl~--tg~~i~t~~~~~~~~ 2083 (2342)
++++++.|+.|++|+++ +++ .+.. ..|...+.+++|+|+|++|++++.+ +.|.+|++. ++..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~----------- 74 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL----------- 74 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-----------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-----------
Confidence 45555789999999995 332 2333 3477889999999999999998887 999999997 3210
Q ss_pred CccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEC---CCCeEEEEEe
Q 000085 2084 MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSI---RRGRLIRRLV 2159 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDL---rTGklIrsL~ 2159 (2342)
..+..+..+. .+.+++|+|+++++++++ .++.|.+||+ .+++.+..+.
T Consensus 75 ---------------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 126 (343)
T 1ri6_A 75 ---------------------------TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE 126 (343)
T ss_dssp ---------------------------EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC
T ss_pred ---------------------------eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc
Confidence 0122233333 778999999999886665 4889999999 4445555555
Q ss_pred cC-CcEEEEEecCCcEEEEEe-CCCeEEEEEeCC-ceee-----eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc
Q 000085 2160 GV-DAHAVSLSSEGVIMTWNK-LQHTLSSFTLNG-VLVA-----RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2160 gh-~vssLSfSpDG~IlVwds-sdGsI~I~dlnG-~~L~-----s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~ 2231 (2342)
.+ .+..++++|+|+.++... .++.+.+|++.. ..+. .........+.+++|+|+|+++++++.
T Consensus 127 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~--------- 197 (343)
T 1ri6_A 127 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE--------- 197 (343)
T ss_dssp CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---------
T ss_pred CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---------
Confidence 43 367899999998666555 789999999974 3222 222224557899999999998876641
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC--CeE--EEEEe---cCC--CCCeEEEEEecCCCEEE
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT--LKV--FHVLK---LGE--GQDITALALNKDNTNLL 2302 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T--gk~--L~tL~---lgH--s~~ItsLafSPDG~~La 2302 (2342)
.++.|.+||+.. ++. ...+. .++ ...+.+++|+|+|++|+
T Consensus 198 -------------------------------~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~ 246 (343)
T 1ri6_A 198 -------------------------------LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 246 (343)
T ss_dssp -------------------------------TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred -------------------------------CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEE
Confidence 156799999843 432 22222 111 23577899999999888
Q ss_pred EE-eCCCcEEEEeCC
Q 000085 2303 VS-TADKQLIVFTDP 2316 (2342)
Q Consensus 2303 SG-SsDGsIrVWDi~ 2316 (2342)
++ ..|+.|.+|+..
T Consensus 247 v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 247 ACDRTASLITVFSVS 261 (343)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred EEecCCCEEEEEEEc
Confidence 55 479999999976
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.62 E-value=1.6e-14 Score=190.73 Aligned_cols=255 Identities=10% Similarity=0.012 Sum_probs=174.8
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC-----
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG----- 2027 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t----- 2027 (2342)
.|..++.++.+ .++.+++|+..++. ...+..+...+ ..++|||||+.|+++ .|+.|++||+.+
T Consensus 88 ~~spd~~~~~~-~~~~i~~~d~~~~~-------~~~l~~~~~~~---~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 88 LDAGRGLVVLF-TQGGLVGFDMLARK-------VTYLFDTNEET---ASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp EETTTTEEEEE-ETTEEEEEETTTTE-------EEEEECCTTCC---TTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred EECCCCeEEEE-ECCEEEEEECCCCc-------eEEccCCcccc---cCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence 34333444444 34799999976521 11122222333 348999999999985 689999999998
Q ss_pred cccceecccCCCC--------------eEEEEecCCCCEEEEEe---------------------------------CCC
Q 000085 2028 AKTLETASGHCAP--------------VTCLALSSDSNFLVTGS---------------------------------QDT 2060 (2342)
Q Consensus 2028 gkll~tL~GHt~~--------------VtcLAfSPDG~~LaSGS---------------------------------~DG 2060 (2342)
++..+....+... +.+++|+|||++|++++ .+.
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 8776655544443 48999999999999998 457
Q ss_pred ceEEEeccCCccccccc-cCCCCCCccccccCCCCCceeecCCC------ccccccCC--ceEEec--CCCC---CeEEE
Q 000085 2061 TILLWRIHRAFTSRTGT-IEPSSGMGTPGNSIGSSTPANASADK------SRRRRIEG--PIHVLR--GHHR---EILCC 2126 (2342)
Q Consensus 2061 TVrVWDl~tg~~i~t~~-~~~~~~V~svs~SpDG~~Las~s~D~------s~~~~i~~--~l~~L~--GHs~---~Vt~V 2126 (2342)
+|.+||+.++....... ..+...+..+.|+|||+.+++...+. +..|+... ....+. .+.. .+.++
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence 89999998875433222 23445677899999999887765442 23354432 223332 2222 24678
Q ss_pred EEec--CCCEEEEEeCCCcEEEEECC-CCeEEEEEecCC--cEE-EEEecCCcEEEEEeCC-C----eEEEEEeCCceee
Q 000085 2127 CVSS--DLGVVVSCSDSSDLLLHSIR-RGRLIRRLVGVD--AHA-VSLSSEGVIMTWNKLQ-H----TLSSFTLNGVLVA 2195 (2342)
Q Consensus 2127 afSP--Dg~lLaSGS~DGtIrIWDLr-TGklIrsL~gh~--vss-LSfSpDG~IlVwdssd-G----sI~I~dlnG~~L~ 2195 (2342)
+|+| ||+++++++.||.+.+|++. ++..++.+..+. +.. ++|++||..+++...+ + .+..|+..+..+.
T Consensus 316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 395 (706)
T 2z3z_A 316 TFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK 395 (706)
T ss_dssp EECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE
T ss_pred eeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce
Confidence 9999 99999999999999999886 677777776654 333 7999999877665443 3 4555565554333
Q ss_pred eecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2196 RAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2196 s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
. ..|...+.+++|+|||++++.++
T Consensus 396 ~--l~~~~~~~~~~~spdg~~l~~~~ 419 (706)
T 2z3z_A 396 D--LTPESGMHRTQLSPDGSAIIDIF 419 (706)
T ss_dssp E--SCCSSSEEEEEECTTSSEEEEEE
T ss_pred e--ccCCCceEEEEECCCCCEEEEEe
Confidence 2 33778899999999999998764
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.62 E-value=3.4e-13 Score=163.22 Aligned_cols=249 Identities=12% Similarity=0.135 Sum_probs=166.1
Q ss_pred eEEEEEcCCCCEEEEEEcC----CcEEEEecCC--ccc--ceecccCCCCeEEEEecCCCCEEEEEe-CCCceEEEeccC
Q 000085 1999 SAVVSITHDKEIITGGHVD----GSIKLLTSDG--AKT--LETASGHCAPVTCLALSSDSNFLVTGS-QDTTILLWRIHR 2069 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~D----GsIrVWDl~t--gkl--l~tL~GHt~~VtcLAfSPDG~~LaSGS-~DGTVrVWDl~t 2069 (2342)
...++|+|||++|++++.+ +.|.+|+++. ++. +.....+......+++ ++++|++++ .+++|.+|++..
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ 129 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence 3458999999999888876 7999998875 432 3344445667788888 788877776 688999999975
Q ss_pred CccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEE
Q 000085 2070 AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHS 2148 (2342)
Q Consensus 2070 g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWD 2148 (2342)
......... .... .+ . . ......+...+.+++|+|+|+++++++ .++.|.+|+
T Consensus 130 ~g~~~~~~~-------~~~~--~g----------~------~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~ 183 (361)
T 3scy_A 130 DGALLPASD-------VIEF--KG----------S------G-PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFN 183 (361)
T ss_dssp TSCBCSCSE-------EEEC--CC----------C------C-SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCcCcccce-------eEEc--cC----------C------C-CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 322211100 0000 00 0 0 000122344578999999999665554 589999998
Q ss_pred CCCCe-------EE-----EEEe---cCCcEEEEEecCCcEEEEEe-CCCeEEEEEeCCceeee---ec--CCCCCCeEE
Q 000085 2149 IRRGR-------LI-----RRLV---GVDAHAVSLSSEGVIMTWNK-LQHTLSSFTLNGVLVAR---AK--LPLSGSIGC 2207 (2342)
Q Consensus 2149 LrTGk-------lI-----rsL~---gh~vssLSfSpDG~IlVwds-sdGsI~I~dlnG~~L~s---~~--~~Hs~~Its 2207 (2342)
+.... .. ..+. +.....++|+|||+.++... .++.+.+|++....+.. .. ..+...+.+
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 263 (361)
T 3scy_A 184 INPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGD 263 (361)
T ss_dssp ECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEE
T ss_pred EcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCccc
Confidence 87533 11 1221 22467899999998665554 68899999986433311 11 114456789
Q ss_pred EEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC--CCe--EEEEEec
Q 000085 2208 MEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH--TLK--VFHVLKL 2283 (2342)
Q Consensus 2208 LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~--Tgk--~L~tL~l 2283 (2342)
++|+|||++|+++... .++.|.+|++. +++ .+..+.
T Consensus 264 i~~spdg~~l~v~~~~---------------------------------------~~~~i~v~~~~~~~g~~~~~~~~~- 303 (361)
T 3scy_A 264 IHLSPDGKYLYASNRL---------------------------------------KADGVAIFKVDETNGTLTKVGYQL- 303 (361)
T ss_dssp EEECTTSSEEEEEECS---------------------------------------SSCEEEEEEECTTTCCEEEEEEEE-
T ss_pred EEECCCCCEEEEECCC---------------------------------------CCCEEEEEEEcCCCCcEEEeeEec-
Confidence 9999999999766421 03679999985 444 455555
Q ss_pred CCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 000085 2284 GEGQDITALALNKDNTNLLVST-ADKQLIVFTDP 2316 (2342)
Q Consensus 2284 gHs~~ItsLafSPDG~~LaSGS-sDGsIrVWDi~ 2316 (2342)
. ...+.+++|+|||++|++++ .++.|.+|+.+
T Consensus 304 ~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 304 T-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred C-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 2 56788999999999999887 67999997643
No 154
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.59 E-value=2.2e-13 Score=162.40 Aligned_cols=245 Identities=9% Similarity=0.050 Sum_probs=176.5
Q ss_pred CceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCE-EEEEEcCCcEEEEecCCcccceecccCCCC----
Q 000085 1966 GTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEI-ITGGHVDGSIKLLTSDGAKTLETASGHCAP---- 2040 (2342)
Q Consensus 1966 D~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGkl-LASGS~DGsIrVWDl~tgkll~tL~GHt~~---- 2040 (2342)
++.+.+|+..++..... +... .. ...++|+|+|++ ++++..++.|.+||..+++.+..+..+...
T Consensus 68 ~~~v~~~d~~~~~~~~~------~~~~-~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 137 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQA------IHND-LK---PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEE 137 (353)
T ss_dssp SEEEEEECTTTCCEEEE------EEES-SC---CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSS
T ss_pred CccEEEEcCCCCeEEEE------EecC-CC---cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccc
Confidence 56899998766322111 1111 11 334899999994 455566899999999999988877665432
Q ss_pred -----eEEEEecCCCCEEEEEe--CCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC-ccccccC--
Q 000085 2041 -----VTCLALSSDSNFLVTGS--QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-SRRRRIE-- 2110 (2342)
Q Consensus 2041 -----VtcLAfSPDG~~LaSGS--~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i~-- 2110 (2342)
+.+++|+|+|++++.++ .++.|.+||..++....... .....+..+.++|+|+.+++...++ +..++..
T Consensus 138 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~ 216 (353)
T 3vgz_A 138 VRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEGKRLYTTNADGELITIDTADN 216 (353)
T ss_dssp CCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT
T ss_pred cCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 78999999999887776 48899999999876554432 2334467889999999887776654 3345442
Q ss_pred CceEEec----CCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeEEEEEecCCcEEEEEecCCcE-EEEEeCCCeE
Q 000085 2111 GPIHVLR----GHHREILCCCVSSDLGVVVSCSD-SSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVI-MTWNKLQHTL 2184 (2342)
Q Consensus 2111 ~~l~~L~----GHs~~Vt~VafSPDg~lLaSGS~-DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~I-lVwdssdGsI 2184 (2342)
+....+. ++...+.+++|+|++++++.++. ++.|.+||+.+++.+..+.......+++++||+. ++.+..++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v 296 (353)
T 3vgz_A 217 KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKV 296 (353)
T ss_dssp EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEE
T ss_pred eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeE
Confidence 2333333 25667889999999997766654 5999999999999998888766677999999985 4555568999
Q ss_pred EEEEeCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2185 SSFTLNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2185 ~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
.+|+... ..+.... ....+.+++|+|||++++++..+
T Consensus 297 ~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 297 SVIDAKSYKVVKTFD--TPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEETTTTEEEEEEE--CCSEEEEEEECTTSCEEEEEEEC
T ss_pred EEEECCCCeEEEEEe--cCCCCCeEEEcCCCCEEEEEEcc
Confidence 9999964 4333322 34578999999999988777644
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.58 E-value=7.6e-14 Score=164.65 Aligned_cols=268 Identities=15% Similarity=0.060 Sum_probs=184.5
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEE-EEEEcCCcEEEEecCCcccceeccc-
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEII-TGGHVDGSIKLLTSDGAKTLETASG- 2036 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklL-ASGS~DGsIrVWDl~tgkll~tL~G- 2036 (2342)
.+++++.++.+++|+..++... ..+..... ...+..++|+|+|+.+ +++..++.|.+||+.+++.+..+..
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~------~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 75 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVD------KVITIADA-GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEE------EEEECTTC-TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred EEEEcCCCCeEEEEECCCCcEE------EEEEcCCC-CCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence 4677778889999997653211 11111110 0013458999999854 5666788999999999988776653
Q ss_pred C----CCCeEEEEecCCCCEEEEEe------------CCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeec
Q 000085 2037 H----CAPVTCLALSSDSNFLVTGS------------QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANAS 2100 (2342)
Q Consensus 2037 H----t~~VtcLAfSPDG~~LaSGS------------~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s 2100 (2342)
+ ...+.+++|+|+|++|++++ .++.|.+||+.++....... ....+..+.++|+|+.+++.
T Consensus 76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~- 152 (337)
T 1pby_B 76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGL- 152 (337)
T ss_dssp BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEE-
T ss_pred CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCCCEEEEe-
Confidence 2 23678899999999999886 67999999998876544432 23456778899999988777
Q ss_pred CCCccccccC--CceEEecCCCCCeEEEEEecCCCEEEEEeCC-C-----------------------cEEEEECCCCeE
Q 000085 2101 ADKSRRRRIE--GPIHVLRGHHREILCCCVSSDLGVVVSCSDS-S-----------------------DLLLHSIRRGRL 2154 (2342)
Q Consensus 2101 ~D~s~~~~i~--~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D-G-----------------------tIrIWDLrTGkl 2154 (2342)
.+.+..|+.. +....+..+.. ...+.|+|++..++.++.+ + .|.+||+.+++.
T Consensus 153 ~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 153 GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 3344555543 23334443321 1123688988866554433 2 468999999987
Q ss_pred EEEE--ecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCce-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC
Q 000085 2155 IRRL--VGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL-VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229 (2342)
Q Consensus 2155 IrsL--~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~ 2229 (2342)
. .+ ..+ ....++++|||+.++.. ++.+.+|++.... +.... ....+.+++|+|||+++++++.
T Consensus 232 ~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~------- 299 (337)
T 1pby_B 232 A-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGA------- 299 (337)
T ss_dssp E-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESB-------
T ss_pred e-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec--CCCceeeEEECCCCCEEEEEcC-------
Confidence 5 32 222 35679999999987766 6899999987543 33322 3456889999999999987631
Q ss_pred CcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec
Q 000085 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL 2283 (2342)
Q Consensus 2230 i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l 2283 (2342)
++.|.+||+.+++.+..+..
T Consensus 300 ----------------------------------~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 300 ----------------------------------LGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp ----------------------------------SSEEEEEETTTCCEEEEEEC
T ss_pred ----------------------------------CCcEEEEECcCCcEEEEEEc
Confidence 57899999999999888873
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.57 E-value=2.2e-14 Score=190.04 Aligned_cols=315 Identities=7% Similarity=-0.092 Sum_probs=196.8
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEc---------CCcEEEEec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHV---------DGSIKLLTS 2025 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~---------DGsIrVWDl 2025 (2342)
++|..+++ +.|+.+++|+..++... ..+..+......+.+++|||||++|++++. |+.|++||+
T Consensus 25 ~dg~~~~~-~~d~~i~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 25 SGQEYLHQ-SADNNIVLYNIETGQSY------TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp SSSEEEEE-CTTSCEEEEESSSCCEE------EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CCCeEEEE-cCCCCEEEEEcCCCcEE------EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 45544444 45789999997663211 111111110012456999999999998876 789999999
Q ss_pred CCcccc--eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC-----------------CCCcc
Q 000085 2026 DGAKTL--ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS-----------------SGMGT 2086 (2342)
Q Consensus 2026 ~tgkll--~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~-----------------~~V~s 2086 (2342)
.+++.+ ..+ ...|.+++|||||+.|++++ |++|++|++.++........++. .....
T Consensus 98 ~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 98 SNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 998763 222 25689999999999999986 78999999988754332211111 12257
Q ss_pred ccccCCCCCceeecCCC-----------------------------------ccccccCCce----------EEecCCCC
Q 000085 2087 PGNSIGSSTPANASADK-----------------------------------SRRRRIEGPI----------HVLRGHHR 2121 (2342)
Q Consensus 2087 vs~SpDG~~Las~s~D~-----------------------------------s~~~~i~~~l----------~~L~GHs~ 2121 (2342)
+.|+|||+.++....+. +..|+..... ..+.+|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 89999999998776441 1223332211 12346888
Q ss_pred CeEEEEEecCCCEEEEEeCC----CcEEEEE----CCCCeEEEEE----ecCC--cE-----EEEEecCCcEEEE--EeC
Q 000085 2122 EILCCCVSSDLGVVVSCSDS----SDLLLHS----IRRGRLIRRL----VGVD--AH-----AVSLSSEGVIMTW--NKL 2180 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS~D----GtIrIWD----LrTGklIrsL----~gh~--vs-----sLSfSpDG~IlVw--dss 2180 (2342)
.+.+++|+||++++++.... ..|.+|| +.++++...+ .++. +. .++|+|||+.+++ ...
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 89999999998777775433 2488899 8887765444 2333 33 6789999985544 344
Q ss_pred CC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCC
Q 000085 2181 QH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNN 2258 (2342)
Q Consensus 2181 dG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~ 2258 (2342)
++ .|.+|++.+..... ...+...+..+.++ +|+.++..+.++.
T Consensus 334 ~g~~~l~~~~~~~~~~~~-lt~~~~~v~~~~~~-d~~~i~~~~~~~~--------------------------------- 378 (719)
T 1z68_A 334 DGYKHIHYIKDTVENAIQ-ITSGKWEAINIFRV-TQDSLFYSSNEFE--------------------------------- 378 (719)
T ss_dssp TSCEEEEEESSCSTTCEE-CSCSSSCEEEEEEE-CSSEEEEEESCGG---------------------------------
T ss_pred CCceEEEEEECCCCceEe-cccCceEEEEEEEE-eCCEEEEEEecCC---------------------------------
Confidence 55 45556665543322 22355668888888 8888876653200
Q ss_pred CccCCCCeEEEEECC--CCeE-EEEEec---CCCCCeEEEEEecCCCEEEE-EeCC--CcEEEEeCCCC
Q 000085 2259 RFDFPSPSICFLDLH--TLKV-FHVLKL---GEGQDITALALNKDNTNLLV-STAD--KQLIVFTDPAL 2318 (2342)
Q Consensus 2259 ~ias~DGsIrIWDL~--Tgk~-L~tL~l---gHs~~ItsLafSPDG~~LaS-GSsD--GsIrVWDi~sL 2318 (2342)
..++.+.+|.+. ++.. ...+.. +|...+..+.|+||+++++. ++.+ ..+.+|+..+.
T Consensus 379 ---~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 379 ---EYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp ---GCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred ---CCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 002445555543 3321 222221 25567889999999987774 3333 46788886443
No 157
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.55 E-value=3.2e-12 Score=154.42 Aligned_cols=253 Identities=13% Similarity=0.095 Sum_probs=189.0
Q ss_pred ceeEEEEEcCCCCEEEEEEcC------------------------CcEEEEecCCcccceecc-cCCCCeEEEEecCCCC
Q 000085 1997 RSSAVVSITHDKEIITGGHVD------------------------GSIKLLTSDGAKTLETAS-GHCAPVTCLALSSDSN 2051 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~D------------------------GsIrVWDl~tgkll~tL~-GHt~~VtcLAfSPDG~ 2051 (2342)
..+..++++++|++++++..+ +.|.+||..+++.+..+. ++-.....++++++|+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 446679999999999988877 479999999888876654 4556789999999999
Q ss_pred EEEEEeCCCceEEEeccCCc-cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec
Q 000085 2052 FLVTGSQDTTILLWRIHRAF-TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS 2130 (2342)
Q Consensus 2052 ~LaSGS~DGTVrVWDl~tg~-~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP 2130 (2342)
++++.+.++.|++||..... ....+ +.. . ....-.++-.....++|+|
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~----------------------~~~-~--------~~g~~~~~~~~P~~ia~~~ 152 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLIL----------------------GRS-M--------QPGSDQNHFCQPTDVAVEP 152 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEE----------------------SBT-T--------BCCCSTTCCSSEEEEEECT
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEe----------------------ccc-C--------CCCCCccccCCCcEEEEeC
Confidence 99999999999999976531 11110 000 0 0000023455788999999
Q ss_pred -CCCEEEEEe-CCCcEEEEECCCCeEEEEEecC------------CcEEEEEecC-CcEEEEEeCCCeEEEEEeC-Ccee
Q 000085 2131 -DLGVVVSCS-DSSDLLLHSIRRGRLIRRLVGV------------DAHAVSLSSE-GVIMTWNKLQHTLSSFTLN-GVLV 2194 (2342)
Q Consensus 2131 -Dg~lLaSGS-~DGtIrIWDLrTGklIrsL~gh------------~vssLSfSpD-G~IlVwdssdGsI~I~dln-G~~L 2194 (2342)
++.++++.+ .++.|++|| .+|..+..+... ....++++++ |.+++.+..++.|.+|+.. |..+
T Consensus 153 ~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~ 231 (329)
T 3fvz_A 153 STGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV 231 (329)
T ss_dssp TTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 788888886 699999999 678888777421 2678999998 8999999999999999998 7766
Q ss_pred eeecCC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC
Q 000085 2195 ARAKLP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH 2273 (2342)
Q Consensus 2195 ~s~~~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~ 2273 (2342)
...... +...+.+++++| |..+++.+ .. + .....+..|++||..
T Consensus 232 ~~~~~~~~~~~~~~~~~~p-g~~~~~~g---~~--------~-----------------------v~~~~~~~v~~~~~~ 276 (329)
T 3fvz_A 232 REIKHASFGRNVFAISYIP-GFLFAVNG---KP--------Y-----------------------FGDQEPVQGFVMNFS 276 (329)
T ss_dssp EEECCTTTTTCEEEEEEET-TEEEEEEC---CC--------C-----------------------TTCSCCCCEEEEETT
T ss_pred EEEeccccCCCcceeeecC-CEEEEeCC---CE--------E-----------------------eccCCCcEEEEEEcC
Confidence 655433 667899999999 54444332 10 0 001125689999999
Q ss_pred CCeEEEEEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2274 TLKVFHVLK--LGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2274 Tgk~L~tL~--lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+++.+..+. .++...+.+|+++|+|..+++...++.|++|+..
T Consensus 277 ~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 277 SGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp TCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 999998874 2566779999999999878888899999999954
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.55 E-value=3.9e-13 Score=164.26 Aligned_cols=245 Identities=9% Similarity=0.054 Sum_probs=168.2
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecC-CcccceecccC-CCCeEEEEecCCCCE--EEEEe-------------CCCc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSD-GAKTLETASGH-CAPVTCLALSSDSNF--LVTGS-------------QDTT 2061 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~-tgkll~tL~GH-t~~VtcLAfSPDG~~--LaSGS-------------~DGT 2061 (2342)
+..++|+|||++|++++.+ .|.+|++. +++........ .+.+.+++|+|||++ +++++ .+++
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~ 120 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY 120 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCce
Confidence 4469999999999988888 99999997 77665432211 133667999999994 55553 6899
Q ss_pred eEEEeccC-CccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe-cCCCCCeEEEEEecCCCEEEEEe
Q 000085 2062 ILLWRIHR-AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL-RGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2062 VrVWDl~t-g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L-~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
+.+|++.. +.... .+..+ ..+...+.+++|+|||+++++++
T Consensus 121 v~v~~~~~~g~~~~-------------------------------------~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 121 GNVFSVSETGKLEK-------------------------------------NVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp EEEEEECTTCCEEE-------------------------------------EEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred EEEEccCCCCcCcc-------------------------------------eEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 99999874 21100 00111 12456789999999999888766
Q ss_pred -CCCcEEEEECC-CCeEE--EEEe----cCCcEEEEEecCCcEEEEEe-CCCeEEEEEeC---Cceee---ee-cCC---
Q 000085 2140 -DSSDLLLHSIR-RGRLI--RRLV----GVDAHAVSLSSEGVIMTWNK-LQHTLSSFTLN---GVLVA---RA-KLP--- 2200 (2342)
Q Consensus 2140 -~DGtIrIWDLr-TGklI--rsL~----gh~vssLSfSpDG~IlVwds-sdGsI~I~dln---G~~L~---s~-~~~--- 2200 (2342)
.++.|++||+. +|+.. ..+. +.....++|+|||+.++... .++.+.+|+++ |.... .. ..+
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 46899999998 77653 3443 23478899999998765544 46889999875 43211 11 111
Q ss_pred --CCC------CeEEEE-EccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEE
Q 000085 2201 --LSG------SIGCME-ISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLD 2271 (2342)
Q Consensus 2201 --Hs~------~ItsLa-fSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWD 2271 (2342)
|.. .+.+++ |+|||++|+++...... ...+.|.+|+
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~-----------------------------------~~~~~i~v~~ 288 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKF-----------------------------------ELQGYIAGFK 288 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST-----------------------------------TSCCEEEEEE
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCC-----------------------------------CCCCeEEEEE
Confidence 122 588999 99999999876421100 0135899999
Q ss_pred CC-CCeEEEE---EecCCCCCeEEEEEec---CCCEEEEEeCC-CcEEEEeCCC
Q 000085 2272 LH-TLKVFHV---LKLGEGQDITALALNK---DNTNLLVSTAD-KQLIVFTDPA 2317 (2342)
Q Consensus 2272 L~-Tgk~L~t---L~lgHs~~ItsLafSP---DG~~LaSGSsD-GsIrVWDi~s 2317 (2342)
+. +++.... .. .+...+..++|+| ||++|++++.+ +.|.+|+...
T Consensus 289 ~~~~g~~~~~~~~~~-~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 289 LRDCGSIEKQLFLSP-TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp ECTTSCEEEEEEEEE-CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ECCCCCEEEeeeeee-cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 86 6765432 32 3455678899999 89999999864 8999998643
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.54 E-value=1.1e-13 Score=174.54 Aligned_cols=184 Identities=6% Similarity=-0.046 Sum_probs=136.9
Q ss_pred eeEEEEEcCCCCEEE----EEEcCCcEEEEecCCc--------cc---ceecccCCCCeEEEEecCC-CCEEEEEeCCCc
Q 000085 1998 SSAVVSITHDKEIIT----GGHVDGSIKLLTSDGA--------KT---LETASGHCAPVTCLALSSD-SNFLVTGSQDTT 2061 (2342)
Q Consensus 1998 Svt~VafSpDGklLA----SGS~DGsIrVWDl~tg--------kl---l~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGT 2061 (2342)
.+.+++|+|+|++|+ +|+.|++|+|||+.++ +. +..+.+|.+.|++++|+|+ +.+|++|+.||+
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 467899999999999 7889999999998765 21 4567789999999999998 899999999999
Q ss_pred eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2062 ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS 2141 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D 2141 (2342)
|++||+.++. ......+|...|++++|+|+|++|++|+.|
T Consensus 174 v~iwD~~~~~----------------------------------------~~~~~~~~~~~v~~v~wspdg~~lasgs~d 213 (434)
T 2oit_A 174 IAVLQVTETV----------------------------------------KVCATLPSTVAVTSVCWSPKGKQLAVGKQN 213 (434)
T ss_dssp EEEEEESSSE----------------------------------------EEEEEECGGGCEEEEEECTTSSCEEEEETT
T ss_pred EEEEEcCCCc----------------------------------------ceeeccCCCCceeEEEEcCCCCEEEEEcCC
Confidence 9999998742 122345688899999999999999999999
Q ss_pred CcEEEEECCCCeEEEEEecC---------CcEEEEEecCCcEEEEE-eCCC------eEEEEEeCCce----ee-eecC-
Q 000085 2142 SDLLLHSIRRGRLIRRLVGV---------DAHAVSLSSEGVIMTWN-KLQH------TLSSFTLNGVL----VA-RAKL- 2199 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrsL~gh---------~vssLSfSpDG~IlVwd-ssdG------sI~I~dlnG~~----L~-s~~~- 2199 (2342)
|+|++||++ ++....+..+ .+..++|++++.+++.. ..+| .+++|++.... .. ....
T Consensus 214 g~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~ 292 (434)
T 2oit_A 214 GTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFME 292 (434)
T ss_dssp SCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCC
T ss_pred CcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEeccc
Confidence 999999998 6666666432 35778899988776543 3332 37888886321 10 1000
Q ss_pred ------CCCCCeEEEEEccCCCEEEEEeC
Q 000085 2200 ------PLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2200 ------~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
....+-..+.+-++.+++++++.
T Consensus 293 ~~~~~~~~r~~~~~~~~l~dw~l~~v~s~ 321 (434)
T 2oit_A 293 PCYGSCTERQHHYYLSYIEEWDLVLAASA 321 (434)
T ss_dssp SSCCCCSSSCCCEEEEEEGGGTEEEEEET
T ss_pred CCCCCCCCcCcceeeehhccCCEEEEecC
Confidence 11222233444478888887763
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.53 E-value=5.7e-13 Score=161.86 Aligned_cols=271 Identities=10% Similarity=0.026 Sum_probs=175.3
Q ss_pred EEEcCCCCEEEEEEc-CCc--EEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2002 VSITHDKEIITGGHV-DGS--IKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2002 VafSpDGklLASGS~-DGs--IrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
.+|+|||+.|+.++. ++. |.+||+.+++..+...+|...+.+++|+|||+.|+.++.++.|.+||+.++....
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---- 116 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---- 116 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE----
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee----
Confidence 578999998888887 663 8888999998888777787777778999999999999999999999998853221
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEE--EEecCCCEEEE-------------------
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCC--CVSSDLGVVVS------------------- 2137 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~V--afSPDg~lLaS------------------- 2137 (2342)
.+..+...+... .+++++..++.
T Consensus 117 ------------------------------------~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3pe7_A 117 ------------------------------------VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHE 160 (388)
T ss_dssp ------------------------------------EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred ------------------------------------eeechhhcccccceeECCCCCeeccccccCcccccccccchhhh
Confidence 112222223222 23666666653
Q ss_pred ---EeCCCcEEEEECCCCeEEEEEecC-CcEEEEEec-CCcEEEEEeCC------CeEEEEEeCCceeeeecCCCC-CCe
Q 000085 2138 ---CSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSS-EGVIMTWNKLQ------HTLSSFTLNGVLVARAKLPLS-GSI 2205 (2342)
Q Consensus 2138 ---GS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSp-DG~IlVwdssd------GsI~I~dlnG~~L~s~~~~Hs-~~I 2205 (2342)
.+.++.|++||+.+++........ .+..++|+| ||+.+++.... ..+.+++..+.........+. ..+
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (388)
T 3pe7_A 161 FYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESC 240 (388)
T ss_dssp HGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEE
T ss_pred hhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccc
Confidence 234578999999999765554433 367889999 99988877643 367777776654443322222 358
Q ss_pred EEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCC----------------CccccccccccccCCCC-----ccCCC
Q 000085 2206 GCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS----------------GTEDFDLASDQSVDNNR-----FDFPS 2264 (2342)
Q Consensus 2206 tsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~----------------~~iaFspd~~~s~ss~~-----ias~D 2264 (2342)
..+.|+|||+.|+..+...... .....+|++..... ....|++++........ ....+
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~-~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 319 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSP-DRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEND 319 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCC-CEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCC
T ss_pred ccceECCCCCEEEEEecCCCCC-cceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCC
Confidence 8899999999886655322210 00022344333221 11134444332211100 01246
Q ss_pred CeEEEEECCCCeEEEEEecCCCC-----------CeEEEEEecCCCEEEEEe-CCCcEEEEeC
Q 000085 2265 PSICFLDLHTLKVFHVLKLGEGQ-----------DITALALNKDNTNLLVST-ADKQLIVFTD 2315 (2342)
Q Consensus 2265 GsIrIWDL~Tgk~L~tL~lgHs~-----------~ItsLafSPDG~~LaSGS-sDGsIrVWDi 2315 (2342)
..|++||+.+++.. .+. .|.. .+.+++|+|||++|+..+ .+|...||..
T Consensus 320 ~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 320 PFLYVFNMKNGTQH-RVA-RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CEEEEEETTTTEEE-EEE-ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CEEEEEeccCCceE-Eec-cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 78999999998764 444 3444 578899999999888665 5777777763
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.52 E-value=1.6e-13 Score=177.73 Aligned_cols=233 Identities=13% Similarity=0.019 Sum_probs=166.3
Q ss_pred CCCCeEEEEecCCCCEEEEEeC-CCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecC---CC-ccc--ccc
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASA---DK-SRR--RRI 2109 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~---D~-s~~--~~i 2109 (2342)
+..+|.+++|+|||++|++++. ||+++||++.++.. ......+...+..+.|+|| +.+++... +. ... ++.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 3568999999999999999887 99999999866543 2222333356788899999 65554443 11 122 222
Q ss_pred --CCceEEecCCCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCC----C
Q 000085 2110 --EGPIHVLRGHHREILCCCVSSDLGV-VVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQ----H 2182 (2342)
Q Consensus 2110 --~~~l~~L~GHs~~Vt~VafSPDg~l-LaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssd----G 2182 (2342)
......+..+ ..+...+|+|+++. +++.+.++.+.+||+.+++..+....+. ..+++||||+.+++...+ .
T Consensus 98 ~~~g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 98 SRPGEEQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp TSTTCCEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEE
T ss_pred cCCCccccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCe
Confidence 2222233332 23456788888753 3334444455599999998766655444 889999999999977655 6
Q ss_pred eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccC
Q 000085 2183 TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDF 2262 (2342)
Q Consensus 2183 sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias 2262 (2342)
.|++|++.+..... ...|.+.+.+++|||||++|+++..++
T Consensus 176 ~i~~~d~~~g~~~~-l~~~~~~~~~~~~SpDG~~l~~~~~~~-------------------------------------- 216 (582)
T 3o4h_A 176 SLFTSNLSSGGLRV-FDSGEGSFSSASISPGMKVTAGLETAR-------------------------------------- 216 (582)
T ss_dssp EEEEEETTTCCCEE-ECCSSCEEEEEEECTTSCEEEEEECSS--------------------------------------
T ss_pred EEEEEcCCCCCceE-eecCCCccccceECCCCCEEEEccCCC--------------------------------------
Confidence 78889887554443 345788899999999999999553211
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEE--------EecCCCEEEEEeCCCcEEEEeC
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALA--------LNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLa--------fSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
...|++||+.+++.. .+. +|...+..++ |+|||..+++++.||.+++|++
T Consensus 217 -~~~i~~~d~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 217 -EARLVTVDPRDGSVE-DLE-LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp -CEEEEEECTTTCCEE-ECC-CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred -eeEEEEEcCCCCcEE-Ecc-CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 127999999999877 555 7777777777 9999988899999999999997
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.52 E-value=5.8e-14 Score=187.96 Aligned_cols=237 Identities=8% Similarity=0.025 Sum_probs=163.9
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCe-----EEEEecCCCCEEEEEeCC---------CceEEEe
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPV-----TCLALSSDSNFLVTGSQD---------TTILLWR 2066 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~V-----tcLAfSPDG~~LaSGS~D---------GTVrVWD 2066 (2342)
.+.|+|||++++++ |++|++||+.++++...+.+|...+ ..++|||||++|+.++.+ +.+.+||
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 48999999999987 9999999999999888888876432 347889999999999887 4456999
Q ss_pred ccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrI 2146 (2342)
+.++... .+..|...+..++|||||+.|+.++ |+.|++
T Consensus 99 ~~~~~~~-----------------------------------------~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~ 136 (740)
T 4a5s_A 99 LNKRQLI-----------------------------------------TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYV 136 (740)
T ss_dssp TTTTEEC-----------------------------------------CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEE
T ss_pred CCCCcEE-----------------------------------------EcccCCCcceeeEECCCCCEEEEEE-CCeEEE
Confidence 9885321 1344566788888899988888774 678888
Q ss_pred EECCCCeEEEEEe-cCC-------------------cEEEEEecCCcEEEEEeCC-------------------------
Q 000085 2147 HSIRRGRLIRRLV-GVD-------------------AHAVSLSSEGVIMTWNKLQ------------------------- 2181 (2342)
Q Consensus 2147 WDLrTGklIrsL~-gh~-------------------vssLSfSpDG~IlVwdssd------------------------- 2181 (2342)
||+.++...+... ++. ...+.|||||+.+++...+
T Consensus 137 ~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred EECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 8888776544211 111 1237888888877665311
Q ss_pred -----------CeEEEEEeCC---c---eeeeecC-----CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCC
Q 000085 2182 -----------HTLSSFTLNG---V---LVARAKL-----PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNS 2239 (2342)
Q Consensus 2182 -----------GsI~I~dlnG---~---~L~s~~~-----~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~ 2239 (2342)
..+++|++.+ . ....... .|...+..++|+|||+.++.......
T Consensus 217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~-------------- 282 (740)
T 4a5s_A 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ-------------- 282 (740)
T ss_dssp ECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST--------------
T ss_pred cCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC--------------
Confidence 1467777766 4 2222222 26778999999999997775542111
Q ss_pred CCCCccccccccccccCCCCccCCCCeEEEEECCCCe----EEE--EE-ecCCCCCeE-----EEEEecCCCEEE-EEeC
Q 000085 2240 KQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK----VFH--VL-KLGEGQDIT-----ALALNKDNTNLL-VSTA 2306 (2342)
Q Consensus 2240 ~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk----~L~--tL-~lgHs~~It-----sLafSPDG~~La-SGSs 2306 (2342)
.+..|.+||+.+++ +.. .+ ..+|...|. .+.|+|||+.|+ ..+.
T Consensus 283 -----------------------~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~ 339 (740)
T 4a5s_A 283 -----------------------NYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN 339 (740)
T ss_dssp -----------------------TEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEEC
T ss_pred -----------------------CEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEc
Confidence 14579999998886 221 11 124555554 789999999887 6653
Q ss_pred -CC--cEEEEeCCCC
Q 000085 2307 -DK--QLIVFTDPAL 2318 (2342)
Q Consensus 2307 -DG--sIrVWDi~sL 2318 (2342)
+| .|++|+..+.
T Consensus 340 ~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 340 EEGYRHICYFQIDKK 354 (740)
T ss_dssp TTSCEEEEEEETTCS
T ss_pred CCCceEEEEEECCCC
Confidence 44 6888886654
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.50 E-value=1.1e-11 Score=145.07 Aligned_cols=235 Identities=11% Similarity=0.144 Sum_probs=174.2
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc------cCCCCeEEEEe-cCCCCEEEEEeC-CCceEEEecc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS------GHCAPVTCLAL-SSDSNFLVTGSQ-DTTILLWRIH 2068 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~------GHt~~VtcLAf-SPDG~~LaSGS~-DGTVrVWDl~ 2068 (2342)
.....++++++|+++++...++.|++||.+ ++.+..+. +|...+.++++ .++++++++... ++.|.+||.
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~- 107 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 107 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-
Confidence 345669999999999998889999999987 55555443 35567899999 577777777644 889999994
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL-RGHHREILCCCVSSDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L-~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIW 2147 (2342)
++.... .+ ..+...+.+++++++++++++...++.|.+|
T Consensus 108 ~g~~~~----------------------------------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 147 (286)
T 1q7f_A 108 YGQFVR----------------------------------------KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIF 147 (286)
T ss_dssp TSCEEE----------------------------------------EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CCcEEE----------------------------------------EecCccCCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 322111 11 1234567899999999988888888999999
Q ss_pred ECCCCeEEEEEec----CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC-CCCCeEEEEEccCCCEEEEEeC
Q 000085 2148 SIRRGRLIRRLVG----VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP-LSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2148 DLrTGklIrsL~g----h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~-Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
|. +++.+..+.. .....++++++|.+++.+..++.|.+|+.++..+...... +...+.+++++++|+++++...
T Consensus 148 ~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 148 DQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNH 226 (286)
T ss_dssp CT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECS
T ss_pred cC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCC
Confidence 96 5667766642 2368899999999888888889999999988765543321 3367899999999988876631
Q ss_pred CCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCC-eEEEEECCCCeEEEEEecCC-CCCeEEEEEecCCCE
Q 000085 2223 SSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSP-SICFLDLHTLKVFHVLKLGE-GQDITALALNKDNTN 2300 (2342)
Q Consensus 2223 DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DG-sIrIWDL~Tgk~L~tL~lgH-s~~ItsLafSPDG~~ 2300 (2342)
++ .|.+||. +++.+..+.... ...+.+++++|+|+.
T Consensus 227 -----------------------------------------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l 264 (286)
T 1q7f_A 227 -----------------------------------------NNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV 264 (286)
T ss_dssp -----------------------------------------SSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred -----------------------------------------CCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcE
Confidence 33 7999995 566666665221 234789999999986
Q ss_pred EEEEeCCCcEEEEeCCC
Q 000085 2301 LLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2301 LaSGSsDGsIrVWDi~s 2317 (2342)
+++ +.|+.|++|+...
T Consensus 265 ~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 265 VLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEE-ETTTEEEEEECSC
T ss_pred EEE-CCCCeEEEEEccc
Confidence 666 6799999999543
No 164
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.49 E-value=3.7e-12 Score=153.04 Aligned_cols=220 Identities=16% Similarity=0.144 Sum_probs=152.1
Q ss_pred CCcEEEEecC--Ccccce-ecccCCCCeEEEEecCCCCEEEEEeC---CCceEEEeccCCccccccccCCCCCCcccccc
Q 000085 2017 DGSIKLLTSD--GAKTLE-TASGHCAPVTCLALSSDSNFLVTGSQ---DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNS 2090 (2342)
Q Consensus 2017 DGsIrVWDl~--tgkll~-tL~GHt~~VtcLAfSPDG~~LaSGS~---DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~S 2090 (2342)
++.|++|+++ +++... ....+...+..++|+|||+ |++++. ++.|.+|++.++..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~------------------ 75 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA------------------ 75 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE------------------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE------------------
Confidence 4567777765 454432 2344667788999999999 655554 68999999966421
Q ss_pred CCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECC-CC--eEEEEEecC-----
Q 000085 2091 IGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIR-RG--RLIRRLVGV----- 2161 (2342)
Q Consensus 2091 pDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLr-TG--klIrsL~gh----- 2161 (2342)
..+..+..|...+..++|+|+++++++++ .+++|.+||+. ++ ..+..+...
T Consensus 76 --------------------~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~ 135 (347)
T 3hfq_A 76 --------------------HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPR 135 (347)
T ss_dssp --------------------EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSS
T ss_pred --------------------EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCC
Confidence 11223344667788999999999888887 78999999996 33 333444321
Q ss_pred ------CcEEEEEecCCcEEEEEeCCCeEEEEEeC-Cceee---eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc
Q 000085 2162 ------DAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVA---RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2162 ------~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~---s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~ 2231 (2342)
.+..++++|||++++.+..++.+.+|++. ...+. .........+..++|+|||+++++++.
T Consensus 136 ~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--------- 206 (347)
T 3hfq_A 136 PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE--------- 206 (347)
T ss_dssp TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET---------
T ss_pred ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC---------
Confidence 25679999999977777778899999997 32222 112223346888999999998876641
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC--CeE--EEEEecCCC------CCeEEEEEecCCCEE
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT--LKV--FHVLKLGEG------QDITALALNKDNTNL 2301 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T--gk~--L~tL~lgHs------~~ItsLafSPDG~~L 2301 (2342)
.++.|.+|++.. ++. +..+. ... ..+..++|+|||++|
T Consensus 207 -------------------------------~~~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~spdG~~l 254 (347)
T 3hfq_A 207 -------------------------------LSSQIASLKYDTQTGAFTQLGIVK-TIPADYTAHNGAAAIRLSHDGHFL 254 (347)
T ss_dssp -------------------------------TTTEEEEEEEETTTTEEEEEEEEE-SSCTTCCSCCEEEEEEECTTSCEE
T ss_pred -------------------------------CCCEEEEEEecCCCCceEEeeeee-ecCCCCCCCCcceeEEECCCCCEE
Confidence 146788888763 543 22333 121 358899999999988
Q ss_pred E-EEeCCCcEEEEeCC
Q 000085 2302 L-VSTADKQLIVFTDP 2316 (2342)
Q Consensus 2302 a-SGSsDGsIrVWDi~ 2316 (2342)
+ ++..++.|.+|+..
T Consensus 255 ~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 255 YVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEEETTTEEEEEEEC
T ss_pred EEEeCCCCEEEEEEEC
Confidence 5 55678999999965
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.48 E-value=2.8e-12 Score=152.39 Aligned_cols=274 Identities=11% Similarity=0.048 Sum_probs=171.8
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEE-EEEEcCCcEEEEecCCccccee
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEII-TGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklL-ASGS~DGsIrVWDl~tgkll~t 2033 (2342)
+++..+++++.++.|++|+..++... ..+.... ......++|+|+|+++ +++..++.|.+||+.+++.+..
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~------~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVY------KSCVMPD--KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEE------EEEECSS--CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEE------EEEecCC--CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 34566778888899999997653211 1111111 0123458999999855 5556789999999999888776
Q ss_pred cccCC------CCeEEEEecCCCCEEEEEeCC------------CceEEEeccCCcccccc-ccCCCCCCccccccCCCC
Q 000085 2034 ASGHC------APVTCLALSSDSNFLVTGSQD------------TTILLWRIHRAFTSRTG-TIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2034 L~GHt------~~VtcLAfSPDG~~LaSGS~D------------GTVrVWDl~tg~~i~t~-~~~~~~~V~svs~SpDG~ 2094 (2342)
+..+. ..+.+++|+|||++|++++.+ ++|.+||+.++...... .......+.+++++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence 65332 337899999999999998866 99999999885433322 222344577788999999
Q ss_pred CceeecCCCccccccC--CceEEecCCC-C-----------------------CeEEEEEecCCCEEEEEeCC-CcEEEE
Q 000085 2095 TPANASADKSRRRRIE--GPIHVLRGHH-R-----------------------EILCCCVSSDLGVVVSCSDS-SDLLLH 2147 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~--~~l~~L~GHs-~-----------------------~Vt~VafSPDg~lLaSGS~D-GtIrIW 2147 (2342)
+.+...+ +..++.. +....+..+. . ...++++++++......... ..+..+
T Consensus 161 -l~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 161 -LYVAGPD-IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp -EEEESSS-EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred -EEEccCc-EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 5444333 4445442 2333333221 0 23456666544211100001 112224
Q ss_pred ECCCCeEEE-EE--ecCCcEEEEEec-CCcEEEEEeCCCeEEEEEeCCcee-eeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2148 SIRRGRLIR-RL--VGVDAHAVSLSS-EGVIMTWNKLQHTLSSFTLNGVLV-ARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2148 DLrTGklIr-sL--~gh~vssLSfSp-DG~IlVwdssdGsI~I~dlnG~~L-~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
|..+++... .+ .+.....++++| ||+.++.. ++.+.+|++..... .... ....+.+++|+|+|++|++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~ 314 (349)
T 1jmx_B 239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGT 314 (349)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECSSSSCEEEESB
T ss_pred eccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc--CCCCccceEECCCCCEEEEecC
Confidence 444443211 11 123467889999 99987776 78999999875433 3332 3346789999999998887531
Q ss_pred CCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec
Q 000085 2223 SSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL 2283 (2342)
Q Consensus 2223 DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l 2283 (2342)
++.|.+||+.+++.+..+..
T Consensus 315 -----------------------------------------~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 315 -----------------------------------------FNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp -----------------------------------------SSEEEEEETTTTEEEEEEEC
T ss_pred -----------------------------------------CCeEEEEeccccceeeeeec
Confidence 57899999999999988873
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.47 E-value=2.4e-12 Score=172.38 Aligned_cols=315 Identities=9% Similarity=-0.035 Sum_probs=196.2
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCccee--EEEEEcCCCCEEEEEEcC---------CcEEEE
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSS--AVVSITHDKEIITGGHVD---------GSIKLL 2023 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Sv--t~VafSpDGklLASGS~D---------GsIrVW 2023 (2342)
++|+.++++ |+.|++|+..++... ..+..+......+ ..++|||||++|+.++.+ +.+.+|
T Consensus 26 ~dg~~~~~~--~~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 26 SDHEYLYKQ--ENNILVFNAEYGNSS------VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp SSSEEEEEE--TTEEEEEETTTCCEE------EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCCcEEEEc--CCcEEEEECCCCceE------EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 456666665 789999997764321 1122222222222 237899999999998876 567799
Q ss_pred ecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC-----------------CCCcc
Q 000085 2024 TSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS-----------------SGMGT 2086 (2342)
Q Consensus 2024 Dl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~-----------------~~V~s 2086 (2342)
|+.+++.. .+..|.+.+..++|||||+.|+.++ |+.|.+|++.++........+.. .....
T Consensus 98 d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~ 175 (740)
T 4a5s_A 98 DLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (740)
T ss_dssp ETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred ECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcc
Confidence 99998755 4677888999999999999999885 78999999988654322111111 22235
Q ss_pred ccccCCCCCceeecCCCc-------------------------------------cccccCC-------ceEEec-----
Q 000085 2087 PGNSIGSSTPANASADKS-------------------------------------RRRRIEG-------PIHVLR----- 2117 (2342)
Q Consensus 2087 vs~SpDG~~Las~s~D~s-------------------------------------~~~~i~~-------~l~~L~----- 2117 (2342)
+.|||||+.++....+.. ..|++.. ....+.
T Consensus 176 ~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~ 255 (740)
T 4a5s_A 176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM 255 (740)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred eEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence 789999999877643321 1122222 222333
Q ss_pred -CCCCCeEEEEEecCCCEEEEEeC----CCcEEEEECCCCe----EE--EEE--ecCC-------cEEEEEecCCcEEE-
Q 000085 2118 -GHHREILCCCVSSDLGVVVSCSD----SSDLLLHSIRRGR----LI--RRL--VGVD-------AHAVSLSSEGVIMT- 2176 (2342)
Q Consensus 2118 -GHs~~Vt~VafSPDg~lLaSGS~----DGtIrIWDLrTGk----lI--rsL--~gh~-------vssLSfSpDG~IlV- 2176 (2342)
+|...+..++|+|||+.++.... +..|.+||+.+|+ +. ..+ ..+. ....+|+|||+.++
T Consensus 256 ~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~ 335 (740)
T 4a5s_A 256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYK 335 (740)
T ss_dssp HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEE
T ss_pred CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEE
Confidence 37778999999999997665432 3479999999987 32 122 2232 23678999999776
Q ss_pred EEe-CCC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCC--CCCCCCCcccccccCCCCCCcccccccc
Q 000085 2177 WNK-LQH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNS--SSTNNGSYDNIQGLNSKQSGTEDFDLAS 2251 (2342)
Q Consensus 2177 wds-sdG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D--Gs~d~~i~d~Lw~l~~~~~~~iaFspd~ 2251 (2342)
|.. .+| .|++|+..+........ ....|..+.. +|++.++..+.. ..
T Consensus 336 ~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~~~-~d~~~i~f~~~~~~~~-------------------------- 387 (740)
T 4a5s_A 336 IISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGIEA-LTSDYLYYISNEYKGM-------------------------- 387 (740)
T ss_dssp EEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEEEE-ECSSEEEEEESCGGGC--------------------------
T ss_pred EEEcCCCceEEEEEECCCCceEeccc-CCEEEEEEEE-EeCCEEEEEEecCCCC--------------------------
Confidence 554 344 57777777655443332 3445555432 446666644321 00
Q ss_pred ccccCCCCccCCCCeEEEEECCCCeEEEEEec---CCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCC
Q 000085 2252 DQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL---GEGQDITALALNKDNTNLLVSTAD---KQLIVFTDPA 2317 (2342)
Q Consensus 2252 ~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l---gHs~~ItsLafSPDG~~LaSGSsD---GsIrVWDi~s 2317 (2342)
.....|+..++..++....+.. +....+..+.|||++++++..... ..+.+++...
T Consensus 388 ----------~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~ 449 (740)
T 4a5s_A 388 ----------PGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVN 449 (740)
T ss_dssp ----------TTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTT
T ss_pred ----------CceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCC
Confidence 0134566666665543323331 123578899999999987755433 3567777543
No 167
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.47 E-value=2.7e-11 Score=146.63 Aligned_cols=268 Identities=14% Similarity=0.102 Sum_probs=162.9
Q ss_pred ecCCCeEEecCCC----ceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEE-cCCcEEEEecCCc
Q 000085 1954 FQHGKASASPASG----TFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGH-VDGSIKLLTSDGA 2028 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD----~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS-~DGsIrVWDl~tg 2028 (2342)
-++|+.+++++.+ +.+++|+...... .. ..+............+++ ++++|++++ .++.|.+|++...
T Consensus 58 spdg~~l~~~~~~~~~~~~v~~~~~~~~~g--~~---~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~ 130 (361)
T 3scy_A 58 SADGKFVYSVNEFSKDQAAVSAFAFDKEKG--TL---HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQD 130 (361)
T ss_dssp CTTSSEEEEEECCSSTTCEEEEEEEETTTT--EE---EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTT
T ss_pred CCCCCEEEEEEccCCCCCcEEEEEEeCCCC--cE---EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCC
Confidence 4667777777664 6899887433101 11 111111111123344666 888666655 6889999999754
Q ss_pred ccceec------c--------cCCCCeEEEEecCCCCEEEEEe-CCCceEEEeccCCccccccccCCCCCCccccccCCC
Q 000085 2029 KTLETA------S--------GHCAPVTCLALSSDSNFLVTGS-QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS 2093 (2342)
Q Consensus 2029 kll~tL------~--------GHt~~VtcLAfSPDG~~LaSGS-~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG 2093 (2342)
..+..+ . .+...+.+++|+|||++|+.++ .+++|.+|++.........
T Consensus 131 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~----------------- 193 (361)
T 3scy_A 131 GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNK----------------- 193 (361)
T ss_dssp SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTC-----------------
T ss_pred CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccc-----------------
Confidence 333211 1 1233468899999999776555 5899999998763210000
Q ss_pred CCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeE--EEEEecC-----CcEE
Q 000085 2094 STPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIRRGRL--IRRLVGV-----DAHA 2165 (2342)
Q Consensus 2094 ~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTGkl--IrsL~gh-----~vss 2165 (2342)
..+... .........+...+.+++|+|+|+++++++ .++.|.+||+.++.. +..+... ....
T Consensus 194 ~~l~~~----------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 263 (361)
T 3scy_A 194 EKFLTK----------GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGD 263 (361)
T ss_dssp CCCEEE----------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEE
T ss_pred cceeec----------ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCccc
Confidence 000000 000011122345678999999999887766 689999999998765 3333322 2468
Q ss_pred EEEecCCcEEEEEeC--CCeEEEEEeC---CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC
Q 000085 2166 VSLSSEGVIMTWNKL--QHTLSSFTLN---GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK 2240 (2342)
Q Consensus 2166 LSfSpDG~IlVwdss--dGsI~I~dln---G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~ 2240 (2342)
++|+|||+.++.... ++.+.+|+++ |.............+.+++|+|||++|++++.
T Consensus 264 i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~------------------ 325 (361)
T 3scy_A 264 IHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACR------------------ 325 (361)
T ss_dssp EEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEET------------------
T ss_pred EEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEEC------------------
Confidence 999999997755544 4889999985 33211111112457889999999999998852
Q ss_pred CCCccccccccccccCCCCccCCCCeEEEE--ECCCCeEEEEEecCCCCCeEEEEEe
Q 000085 2241 QSGTEDFDLASDQSVDNNRFDFPSPSICFL--DLHTLKVFHVLKLGEGQDITALALN 2295 (2342)
Q Consensus 2241 ~~~~iaFspd~~~s~ss~~ias~DGsIrIW--DL~Tgk~L~tL~lgHs~~ItsLafS 2295 (2342)
.++.|.+| |..+++........+...+.|+.|.
T Consensus 326 ----------------------~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 326 ----------------------DTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp ----------------------TTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred ----------------------CCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 14567884 5567776544322344578888886
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.41 E-value=8.5e-12 Score=153.50 Aligned_cols=272 Identities=10% Similarity=0.096 Sum_probs=178.0
Q ss_pred cCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe----------CCCceEEEeccCCccccccccC-----C
Q 000085 2016 VDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS----------QDTTILLWRIHRAFTSRTGTIE-----P 2080 (2342)
Q Consensus 2016 ~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS----------~DGTVrVWDl~tg~~i~t~~~~-----~ 2080 (2342)
.|+.|.+||..+++.+.++..+..+ .++|+|||+++++++ .+++|.+||..+.+...+.... .
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999999988888877666 899999999999886 3678999999887655544211 2
Q ss_pred CCCCccccccCCCCCceeecC---CCccccccCC--ceEE-ecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCC-C
Q 000085 2081 SSGMGTPGNSIGSSTPANASA---DKSRRRRIEG--PIHV-LRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRR-G 2152 (2342)
Q Consensus 2081 ~~~V~svs~SpDG~~Las~s~---D~s~~~~i~~--~l~~-L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrT-G 2152 (2342)
......++++|||+++.+... +.+..++... .+.. +. +. ....+.+.|++ ..+++.+.||.+.+|++.. +
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 245677899999998876653 2234454432 2333 22 21 22335667765 6778889999999999865 6
Q ss_pred eEEEEEe------cC-CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee---eecC-C----CC----CCeEEEEEccC
Q 000085 2153 RLIRRLV------GV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA---RAKL-P----LS----GSIGCMEISLD 2213 (2342)
Q Consensus 2153 klIrsL~------gh-~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~---s~~~-~----Hs----~~ItsLafSPD 2213 (2342)
+...... .. ....+.++++|..+++...++.+.++++.+..+. .... . +. .....++|+||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 185 KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA 264 (361)
T ss_dssp SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence 6553222 11 1123344667766666666777777776432111 0000 0 00 11123789999
Q ss_pred CCEEEEEeC-CCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEE
Q 000085 2214 GHSALIGVN-SSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITAL 2292 (2342)
Q Consensus 2214 Gk~LaSGS~-DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsL 2292 (2342)
+..++++.. ++... . .....+.|.+||+.+++.+.++. .+. +.++
T Consensus 265 g~~lyv~~~~~~~~~--------~-----------------------~~~~~~~v~viD~~t~~~v~~i~-~~~--p~~i 310 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEG--------T-----------------------HKFPAAEIWVMDTKTKQRVARIP-GRD--ALSM 310 (361)
T ss_dssp TTEEEEEEESSCCTT--------C-----------------------TTCCCSEEEEEETTTTEEEEEEE-CTT--CCEE
T ss_pred CCeEEEEEccCCCcc--------c-----------------------ccCCCceEEEEECCCCcEEEEEe-cCC--eeEE
Confidence 888876642 11100 0 00014589999999999999998 444 8999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCChhhhhhh
Q 000085 2293 ALNKDNTNLLVSTADKQLIVFTDPALSLKVVDQM 2326 (2342)
Q Consensus 2293 afSPDG~~LaSGSsDGsIrVWDi~sLs~k~LdQL 2326 (2342)
+|+|||++|++++. +.|.|||..+..++.+..+
T Consensus 311 a~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 311 TIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp EEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred EECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 99999999998887 9999999776633344443
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.40 E-value=3.5e-12 Score=154.49 Aligned_cols=257 Identities=13% Similarity=-0.023 Sum_probs=165.9
Q ss_pred EEEcCCCCEEEEEEcC---CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2002 VSITHDKEIITGGHVD---GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2002 VafSpDGklLASGS~D---GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
++|+|||++|+....+ ..|.+||+.+++......++...+.++.|+|||++|+.++.++.|.+||+.++.......
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~- 119 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYT- 119 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe-
Confidence 6899999988776543 368888998887655444444334458899999999999999999999998764322111
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEE-----eCCCcEEEEECCCCe
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSC-----SDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSG-----S~DGtIrIWDLrTGk 2153 (2342)
.+. .++++|..++....+... .+ ....++|+|+++.++.+ ..+..|++||+.+++
T Consensus 120 ~~~------~~~~~g~~l~~~~~~~~~---------~~-----~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (396)
T 3c5m_A 120 VDE------EWKGYGTWVANSDCTKLV---------GI-----EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE 179 (396)
T ss_dssp CCT------TEEEEEEEEECTTSSEEE---------EE-----EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC
T ss_pred ccc------ccCCCCCEEEeccCCccc---------cc-----cccccccCCCCcceeeeeeccCCCcceEEEEECCCCc
Confidence 010 134444444332221100 00 01124578888877654 466789999999988
Q ss_pred EEEEEecC-CcEEEEEec-CCcEEEEEeCC------CeEEEEEeCCceeeeecCCC-CCCeEEEEEccCCCEEEEEeCCC
Q 000085 2154 LIRRLVGV-DAHAVSLSS-EGVIMTWNKLQ------HTLSSFTLNGVLVARAKLPL-SGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2154 lIrsL~gh-~vssLSfSp-DG~IlVwdssd------GsI~I~dlnG~~L~s~~~~H-s~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
........ ....+.|+| ||..+++...+ ..|.++++.+.......... ...+..++|+|||++|+.++.+.
T Consensus 180 ~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 180 LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 76555432 367889999 78866665433 35778887665433322211 23588899999999888765221
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec-CCCEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK-DNTNLLV 2303 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP-DG~~LaS 2303 (2342)
. ..++.|++||+.+++...... .. ... +.|+| ||++|++
T Consensus 260 ~------------------------------------~~~~~l~~~d~~~g~~~~l~~--~~-~~~-~~~s~~dg~~l~~ 299 (396)
T 3c5m_A 260 G------------------------------------QTDRVIYKANPETLENEEVMV--MP-PCS-HLMSNFDGSLMVG 299 (396)
T ss_dssp T------------------------------------TCCEEEEEECTTTCCEEEEEE--CC-SEE-EEEECSSSSEEEE
T ss_pred C------------------------------------CccceEEEEECCCCCeEEeee--CC-CCC-CCccCCCCceEEE
Confidence 1 013459999999887544332 11 233 89999 9998887
Q ss_pred Ee----------------CCCcEEEEeCCCCC
Q 000085 2304 ST----------------ADKQLIVFTDPALS 2319 (2342)
Q Consensus 2304 GS----------------sDGsIrVWDi~sLs 2319 (2342)
++ .++.|++|+..+..
T Consensus 300 ~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 300 DGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EECCC----------CCCCCCEEEEEETTTTB
T ss_pred ecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 65 34789999976543
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.36 E-value=4e-11 Score=147.52 Aligned_cols=277 Identities=8% Similarity=-0.028 Sum_probs=173.9
Q ss_pred CCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEE----------cCCcEEEEecCCcccceec
Q 000085 1965 SGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGH----------VDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1965 sD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS----------~DGsIrVWDl~tgkll~tL 2034 (2342)
.|+.+.+|+..++... ..+.. +... .++|+|||+++++++ .+++|.+||..+++.+.++
T Consensus 29 ~d~~v~v~D~~t~~~~------~~i~~---g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i 97 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFL------GMVPT---AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEI 97 (361)
T ss_dssp GGCEEEEEETTTCCEE------EEEEC---CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEE
T ss_pred ccCeEEEEECCCCeEE------EEecC---CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEE
Confidence 3568889986553211 11111 2222 589999999888876 3678999999998888776
Q ss_pred ccC------CCCeEEEEecCCCCEEEEEeC--CCceEEEeccCCccccc-cccCCC--------CCCccccccCCCCCce
Q 000085 2035 SGH------CAPVTCLALSSDSNFLVTGSQ--DTTILLWRIHRAFTSRT-GTIEPS--------SGMGTPGNSIGSSTPA 2097 (2342)
Q Consensus 2035 ~GH------t~~VtcLAfSPDG~~LaSGS~--DGTVrVWDl~tg~~i~t-~~~~~~--------~~V~svs~SpDG~~La 2097 (2342)
..+ ......++++|||++|++++. +++|.+||+.+++.... ...... .....++++++|..+.
T Consensus 98 ~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~ 177 (361)
T 2oiz_A 98 SLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLT 177 (361)
T ss_dssp EECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEE
T ss_pred EcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEE
Confidence 532 345678999999999998874 68999999998766554 311110 0111233334443332
Q ss_pred eecCC-CccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe--EEEEEec------------CC
Q 000085 2098 NASAD-KSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR--LIRRLVG------------VD 2162 (2342)
Q Consensus 2098 s~s~D-~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk--lIrsL~g------------h~ 2162 (2342)
..... +...... .....+..+..++ .+.+++++..++..+.++.|.++|+..+. .+..+.. ..
T Consensus 178 v~~~~~g~~~~~~-~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g 255 (361)
T 2oiz_A 178 INLGEDGKVASQS-RSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG 255 (361)
T ss_dssp EEECTTSSEEEEE-ECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC
T ss_pred EEECCCCcEeeec-cccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC
Confidence 22211 1100000 0001122222222 23346778788888889999999997553 2333221 11
Q ss_pred cEEEEEecCCcEEEEEeC-----------CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc
Q 000085 2163 AHAVSLSSEGVIMTWNKL-----------QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2163 vssLSfSpDG~IlVwdss-----------dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~ 2231 (2342)
...+++++||..++.... .+.+.+|+.....+......+. +.+++|+|||++|++++
T Consensus 256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n---------- 323 (361)
T 2oiz_A 256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLD---------- 323 (361)
T ss_dssp SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEEC----------
T ss_pred eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeC----------
Confidence 234789999765444322 3479999987444333322243 99999999999998764
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC--eEEEEEecCCCCCeEEEEEecCCC
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL--KVFHVLKLGEGQDITALALNKDNT 2299 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg--k~L~tL~lgHs~~ItsLafSPDG~ 2299 (2342)
++.|.+||..++ +.+.++. .++.....++++|+|+
T Consensus 324 --------------------------------~~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 324 --------------------------------GGNVNVYDISQPEPKLLRTIE-GAAEASLQVQFHPVGG 360 (361)
T ss_dssp --------------------------------SSCEEEEECSSSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred --------------------------------CCeEEEEECCCCcceeeEEec-cCCCCcEEEEecCCCC
Confidence 146999999999 9999886 5778889999999985
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.36 E-value=2.3e-10 Score=136.71 Aligned_cols=229 Identities=11% Similarity=0.024 Sum_probs=160.5
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC----CceEEEeccCCcccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD----TTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D----GTVrVWDl~tg~~i~ 2074 (2342)
...++|+++|++++++..++.|++||..+++.......+...|.+++++++|++++++..+ +.|.+||..++....
T Consensus 47 ~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 47 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD 126 (333)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred ccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence 3568999999988888889999999999887665554567889999999999988887776 689999887642110
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC------CCcEEEEE
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD------SSDLLLHS 2148 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~------DGtIrIWD 2148 (2342)
.. .-..+...+.+++++|++.++++... .+.|..+|
T Consensus 127 ~~--------------------------------------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~ 168 (333)
T 2dg1_A 127 II--------------------------------------EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVS 168 (333)
T ss_dssp EE--------------------------------------CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEEC
T ss_pred EE--------------------------------------ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEe
Confidence 00 00113456889999999988877654 35677777
Q ss_pred CCCCeEEEEEec-CCcEEEEEecCCcE-EEEEeCCCeEEEEEeC--Cceeee----e--cCCCCCCeEEEEEccCCCEEE
Q 000085 2149 IRRGRLIRRLVG-VDAHAVSLSSEGVI-MTWNKLQHTLSSFTLN--GVLVAR----A--KLPLSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2149 LrTGklIrsL~g-h~vssLSfSpDG~I-lVwdssdGsI~I~dln--G~~L~s----~--~~~Hs~~ItsLafSPDGk~La 2218 (2342)
..+++....... .....+++++||.. ++.+..++.|.+|+.. +..+.. . .......+..++++++|++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v 248 (333)
T 2dg1_A 169 PDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYV 248 (333)
T ss_dssp TTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEE
T ss_pred CCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEE
Confidence 766655433222 23678899999984 4555667899999984 432211 0 111114678899999998777
Q ss_pred EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCC------CeEEE
Q 000085 2219 IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQ------DITAL 2292 (2342)
Q Consensus 2219 SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~------~ItsL 2292 (2342)
+... ++.|.+||. +++.+..+. .+.. .+.++
T Consensus 249 ~~~~-----------------------------------------~~~v~~~d~-~g~~~~~~~-~~~~~~g~~~~~~~~ 285 (333)
T 2dg1_A 249 AMYG-----------------------------------------QGRVLVFNK-RGYPIGQIL-IPGRDEGHMLRSTHP 285 (333)
T ss_dssp EEET-----------------------------------------TTEEEEECT-TSCEEEEEE-CTTGGGTCSCBCCEE
T ss_pred EEcC-----------------------------------------CCEEEEECC-CCCEEEEEE-cCCCccccccCcceE
Confidence 5531 467899998 566666665 2222 68999
Q ss_pred EEecCCCEEEEEeCCC
Q 000085 2293 ALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2293 afSPDG~~LaSGSsDG 2308 (2342)
+|++|+..|++++.++
T Consensus 286 ~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 286 QFIPGTNQLIICSNDI 301 (333)
T ss_dssp EECTTSCEEEEEEECG
T ss_pred EECCCCCEEEEEeCcc
Confidence 9999988887766653
No 172
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.35 E-value=4.2e-11 Score=159.50 Aligned_cols=245 Identities=13% Similarity=0.112 Sum_probs=168.0
Q ss_pred eeEEEEEcCCCCEEEEEEcCC-----cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCc-----------
Q 000085 1998 SSAVVSITHDKEIITGGHVDG-----SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT----------- 2061 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DG-----sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGT----------- 2061 (2342)
.+..++|||||++|+.+..++ .|++||+.+++.+.....+. .+.+++|+|||+.|+.++.|+.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 456699999999888776543 89999999998765433222 3678999999999999988876
Q ss_pred -----eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE
Q 000085 2062 -----ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2062 -----VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa 2136 (2342)
|.+|++.++.... ..+.....|...+..+.|+|||++|+
T Consensus 205 ~~~~~v~~~~l~t~~~~~------------------------------------~~v~~~~~~~~~~~~~~~SpDg~~l~ 248 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSED------------------------------------ILCAEFPDEPKWMGGAELSDDGRYVL 248 (710)
T ss_dssp CCCCEEEEEETTSCGGGC------------------------------------EEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred CCCCEEEEEECCCCcccc------------------------------------eEEeccCCCCeEEEEEEEcCCCCEEE
Confidence 7778776542100 01111123556678999999999988
Q ss_pred EEeC-----CCcEEEEECCC------Ce-EEEEEecCC-cEEEEEecCCcEEEEEeCC----CeEEEEEeCCcee--eee
Q 000085 2137 SCSD-----SSDLLLHSIRR------GR-LIRRLVGVD-AHAVSLSSEGVIMTWNKLQ----HTLSSFTLNGVLV--ARA 2197 (2342)
Q Consensus 2137 SGS~-----DGtIrIWDLrT------Gk-lIrsL~gh~-vssLSfSpDG~IlVwdssd----GsI~I~dlnG~~L--~s~ 2197 (2342)
.++. +..|++||+.+ +. ....+..+. .....++++|..+++.... ..|.+|++.+... ...
T Consensus 249 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 328 (710)
T 2xdw_A 249 LSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV 328 (710)
T ss_dssp EEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred EEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee
Confidence 7764 56899999987 53 345554432 2334588898877665442 3688888865321 112
Q ss_pred cCCCCC--CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2198 KLPLSG--SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2198 ~~~Hs~--~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
..+|.. .+..++|++++.++++...++. ..|.+||+.++
T Consensus 329 l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~---------------------------------------~~l~~~~~~~g 369 (710)
T 2xdw_A 329 LVPEHEKDVLEWVACVRSNFLVLCYLHDVK---------------------------------------NTLQLHDLATG 369 (710)
T ss_dssp EECCCSSCEEEEEEEETTTEEEEEEEETTE---------------------------------------EEEEEEETTTC
T ss_pred ccCCCCCCeEEEEEEEcCCEEEEEEEECCE---------------------------------------EEEEEEECCCC
Confidence 223433 6888999877777776653221 25788898788
Q ss_pred eEEEEEecCCCCCeEEEEEecCCCEEEEE----eCCCcEEEEeCCCCC
Q 000085 2276 KVFHVLKLGEGQDITALALNKDNTNLLVS----TADKQLIVFTDPALS 2319 (2342)
Q Consensus 2276 k~L~tL~lgHs~~ItsLafSPDG~~LaSG----SsDGsIrVWDi~sLs 2319 (2342)
+.+..+. .+.+.|.+++++|++..|+.. ...++|++||..+..
T Consensus 370 ~~~~~l~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 370 ALLKIFP-LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CEEEEEC-CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEecC-CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8778887 567788999999999776643 245789999976543
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.34 E-value=3.4e-11 Score=157.91 Aligned_cols=279 Identities=12% Similarity=0.007 Sum_probs=175.9
Q ss_pred eeEEEEEcCCCCEEEEE--EcCCcEEEEecCCcccceecccCCCCeE---------EEEec--CCCCE-EEEEeC-CCce
Q 000085 1998 SSAVVSITHDKEIITGG--HVDGSIKLLTSDGAKTLETASGHCAPVT---------CLALS--SDSNF-LVTGSQ-DTTI 2062 (2342)
Q Consensus 1998 Svt~VafSpDGklLASG--S~DGsIrVWDl~tgkll~tL~GHt~~Vt---------cLAfS--PDG~~-LaSGS~-DGTV 2062 (2342)
.+..+++++++-+++.+ +.++...||....+.....+..|...|. ...|+ |||++ |+.++. +..|
T Consensus 25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l 104 (662)
T 3azo_A 25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRL 104 (662)
T ss_dssp CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCE
T ss_pred ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeE
Confidence 34558899887777777 5588899999655555666777776666 56565 99998 776553 4555
Q ss_pred EEEecc--CCccccccccC----CCCCCccccccCCCCCceeecCC-----------CccccccC-------CceEEec-
Q 000085 2063 LLWRIH--RAFTSRTGTIE----PSSGMGTPGNSIGSSTPANASAD-----------KSRRRRIE-------GPIHVLR- 2117 (2342)
Q Consensus 2063 rVWDl~--tg~~i~t~~~~----~~~~V~svs~SpDG~~Las~s~D-----------~s~~~~i~-------~~l~~L~- 2117 (2342)
.+|++. +......+... +...+..++|+|||+.++....+ .+..|+.. .....+.
T Consensus 105 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 184 (662)
T 3azo_A 105 YAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD 184 (662)
T ss_dssp EEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC
T ss_pred EEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe
Confidence 555554 20222222111 34456788999999999777654 23345543 3455666
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCC--------cEEEEECC-CC---eEEEEEec--CCcEEEEEecCCcEEEEEeCCC-
Q 000085 2118 GHHREILCCCVSSDLGVVVSCSDSS--------DLLLHSIR-RG---RLIRRLVG--VDAHAVSLSSEGVIMTWNKLQH- 2182 (2342)
Q Consensus 2118 GHs~~Vt~VafSPDg~lLaSGS~DG--------tIrIWDLr-TG---klIrsL~g--h~vssLSfSpDG~IlVwdssdG- 2182 (2342)
.+...+..++|+|||++|+.++.++ .|++||+. +| +......+ ..+..++|+|||++++....++
T Consensus 185 ~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~ 264 (662)
T 3azo_A 185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW 264 (662)
T ss_dssp SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS
T ss_pred cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC
Confidence 6667888999999999999887553 79999998 57 44444443 2467899999999777666667
Q ss_pred -eEEEEEeCCceeeeecCCCCCC--------eEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccccccc
Q 000085 2183 -TLSSFTLNGVLVARAKLPLSGS--------IGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQ 2253 (2342)
Q Consensus 2183 -sI~I~dlnG~~L~s~~~~Hs~~--------ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~ 2253 (2342)
.|.+|+..+.........+... +.+++|+++++++++++. +.
T Consensus 265 ~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~---------------------------- 315 (662)
T 3azo_A 265 WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA---------------------------- 315 (662)
T ss_dssp CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS----------------------------
T ss_pred eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc----------------------------
Confidence 5555555343333322222221 567889999998887752 21
Q ss_pred ccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEE-EEecCCCEEEEEeCCCc--EEEEeCCCC
Q 000085 2254 SVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITAL-ALNKDNTNLLVSTADKQ--LIVFTDPAL 2318 (2342)
Q Consensus 2254 s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsL-afSPDG~~LaSGSsDGs--IrVWDi~sL 2318 (2342)
..|.++|+.+++ +..+. .|...+..+ +++.+.-.+++++.+.. |.+|+..+.
T Consensus 316 -----------~~l~~~d~~~~~-~~~l~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 316 -----------AVLGILDPESGE-LVDAA-GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp -----------CEEEEEETTTTE-EEECC-SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred -----------cEEEEEECCCCc-EEEec-CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 234444777666 55665 566677766 44433333344555544 444554333
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.34 E-value=1.1e-10 Score=139.76 Aligned_cols=221 Identities=11% Similarity=0.071 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCEEEEEEcC---C--cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC--------------
Q 000085 1999 SAVVSITHDKEIITGGHVD---G--SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD-------------- 2059 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~D---G--sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D-------------- 2059 (2342)
+..++|||||+.|+..+.+ + .|.+|++.+++.......+ . |.+++|+|||+.|+.++.+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 4568999999988877654 3 3788888887765544433 3 9999999999999988754
Q ss_pred -------------CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEE
Q 000085 2060 -------------TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCC 2126 (2342)
Q Consensus 2060 -------------GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~V 2126 (2342)
..|.+||+.++ ..+..+.. . .+..+
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~----------------------------------------~~~~~l~~-~-~~~~~ 176 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESE----------------------------------------EVIEEFEK-P-RFSSG 176 (347)
T ss_dssp CC---------CEEEEEEEETTTT----------------------------------------EEEEEEEE-E-TTCEE
T ss_pred eeecCcccccCccceEEEEECCCC----------------------------------------eEEeeecC-C-Ccccc
Confidence 22333333221 11123333 3 67889
Q ss_pred EEecCCCEEEEEeCCC-------cEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCC--------CeEEEEEeCC
Q 000085 2127 CVSSDLGVVVSCSDSS-------DLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQ--------HTLSSFTLNG 2191 (2342)
Q Consensus 2127 afSPDg~lLaSGS~DG-------tIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssd--------GsI~I~dlnG 2191 (2342)
+|+||| ++++++.++ ...||.+.+++.. .+..+ .....++|||+.+++...+ ..|.+|+ .+
T Consensus 177 ~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~ 252 (347)
T 2gop_A 177 IWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GK 252 (347)
T ss_dssp EEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SS
T ss_pred cCCCCe-EEEEEecccccccccccccEEEeCCCceE-EeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC-CC
Confidence 999999 887776542 3344444455543 33323 3334459999987776533 3677777 44
Q ss_pred ceeeeecCCCCCCeEE-EEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2192 VLVARAKLPLSGSIGC-MEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2192 ~~L~s~~~~Hs~~Its-LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
. .......|...+.. +.|+ || ++++++. ++.++||
T Consensus 253 ~-~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~-----------------------------------------~~~~~l~ 288 (347)
T 2gop_A 253 E-VMGILDEVDRGVGQAKIKD-GK-VYFTLFE-----------------------------------------EGSVNLY 288 (347)
T ss_dssp C-EEESSTTCCSEEEEEEEET-TE-EEEEEEE-----------------------------------------TTEEEEE
T ss_pred c-eEeccccCCcccCCccEEc-Cc-EEEEEec-----------------------------------------CCcEEEE
Confidence 3 33333346778886 9999 88 7776652 4567777
Q ss_pred ECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcE-EEEeCC
Q 000085 2271 DLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQL-IVFTDP 2316 (2342)
Q Consensus 2271 DL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsI-rVWDi~ 2316 (2342)
+.+++....+ .+...|.+++|+| ..+++++.++.. .+|..+
T Consensus 289 -~~~g~~~~~~--~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 289 -IWDGEIKPIA--KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -EESSSEEEEE--CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred -EcCCceEEEe--cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 6666654433 3577899999999 677788777765 777654
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.33 E-value=2.7e-11 Score=147.12 Aligned_cols=257 Identities=9% Similarity=-0.052 Sum_probs=164.1
Q ss_pred eecCCCeEEecCC-Cce--EEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc
Q 000085 1953 LFQHGKASASPAS-GTF--LRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK 2029 (2342)
Q Consensus 1953 lf~~Gk~LaSsSs-D~t--IRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk 2029 (2342)
.-++|+.++.++. ++. +.+|+..++.. ..+... +...+..++|+|||+.|+.++.++.|++||+.+++
T Consensus 43 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-------~~lt~~--~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~ 113 (388)
T 3pe7_A 43 FTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-------TQLTEG--RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE 113 (388)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETTTCEE-------EECCCS--SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred CCCCCCEEEEEEcCCCCceEEEEeCCCCce-------EEeeeC--CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 3467777776665 553 66666554211 111111 11111136799999999999999999999999998
Q ss_pred cceecccCCCCeEEEE--ecCCCCEEEEE----------------------eCCCceEEEeccCCccccccccCCCCCCc
Q 000085 2030 TLETASGHCAPVTCLA--LSSDSNFLVTG----------------------SQDTTILLWRIHRAFTSRTGTIEPSSGMG 2085 (2342)
Q Consensus 2030 ll~tL~GHt~~VtcLA--fSPDG~~LaSG----------------------S~DGTVrVWDl~tg~~i~t~~~~~~~~V~ 2085 (2342)
....+..+...+.... +++++.+++.. +.+..|.+||+.++..... ......+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--~~~~~~~~ 191 (388)
T 3pe7_A 114 ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI--LQENQWLG 191 (388)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE--EEESSCEE
T ss_pred ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe--ecCCcccc
Confidence 7777776766665444 48999998753 2457899999988643222 22334567
Q ss_pred cccccC-CCCCceeecCCC-------cccccc-CCceEEecCCC--CCeEEEEEecCCCEEEEEeC-CC----cEEEEEC
Q 000085 2086 TPGNSI-GSSTPANASADK-------SRRRRI-EGPIHVLRGHH--REILCCCVSSDLGVVVSCSD-SS----DLLLHSI 2149 (2342)
Q Consensus 2086 svs~Sp-DG~~Las~s~D~-------s~~~~i-~~~l~~L~GHs--~~Vt~VafSPDg~lLaSGS~-DG----tIrIWDL 2149 (2342)
.+.++| ||+.++...... +..++. ......+..+. ..+..++|+|||+.|+..+. ++ .|++||+
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (388)
T 3pe7_A 192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP 271 (388)
T ss_dssp EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEec
Confidence 788999 999886655431 122332 23344555554 35788999999997765443 22 3999999
Q ss_pred CCCeEEE--EEecCC-----cEEEEEecCCcEEEEE---------eCCCeEEEEEeCCceeeeecCCCCC----------
Q 000085 2150 RRGRLIR--RLVGVD-----AHAVSLSSEGVIMTWN---------KLQHTLSSFTLNGVLVARAKLPLSG---------- 2203 (2342)
Q Consensus 2150 rTGklIr--sL~gh~-----vssLSfSpDG~IlVwd---------ssdGsI~I~dlnG~~L~s~~~~Hs~---------- 2203 (2342)
.+++... .+.++. ...++|+|||+.+++. ..+..|++|++.+..+.... .+..
T Consensus 272 ~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~~~~ 350 (388)
T 3pe7_A 272 ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA-RHDTSWKVFEGDRQ 350 (388)
T ss_dssp TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE-ECCCCCCCBTTBSS
T ss_pred CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec-cccCcccccccccc
Confidence 9987533 333211 1123689999877764 23457899998865554332 2433
Q ss_pred -CeEEEEEccCCCEEEEEe
Q 000085 2204 -SIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2204 -~ItsLafSPDGk~LaSGS 2221 (2342)
.+.+++|+|||+.|+.++
T Consensus 351 ~~~~~~~~spDg~~l~~~s 369 (388)
T 3pe7_A 351 VTHPHPSFTPDDKQILFTS 369 (388)
T ss_dssp TTCCCCEECTTSSEEEEEE
T ss_pred cCCCCccCCCCCCEEEEEe
Confidence 578899999999999876
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.31 E-value=3.4e-11 Score=145.85 Aligned_cols=259 Identities=8% Similarity=0.013 Sum_probs=158.8
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~ 2081 (2342)
+.|+|||+.|+.++.++.|++||+.+++.......+.. |+++|+.|+..+.+....+|..
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~------~~~~g~~l~~~~~~~~~~~~~~-------------- 145 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE------WKGYGTWVANSDCTKLVGIEIL-------------- 145 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT------EEEEEEEEECTTSSEEEEEEEE--------------
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc------cCCCCCEEEeccCCcccccccc--------------
Confidence 67999999999999999999999998876665555544 6667777777666666666542
Q ss_pred CCCccccccCCCCCceeec----CC--CccccccC-CceEEecCCCCCeEEEEEec-CCCEEEEEeCC------CcEEEE
Q 000085 2082 SGMGTPGNSIGSSTPANAS----AD--KSRRRRIE-GPIHVLRGHHREILCCCVSS-DLGVVVSCSDS------SDLLLH 2147 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s----~D--~s~~~~i~-~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~D------GtIrIW 2147 (2342)
...++|+++.++... .. .+..++.. .....+..+...+..+.|+| ++..++.++.+ ..|.+|
T Consensus 146 ----~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (396)
T 3c5m_A 146 ----KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLV 221 (396)
T ss_dssp ----GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEE
T ss_pred ----ccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEE
Confidence 123455665544322 11 12223321 22333445677889999999 78877766543 368899
Q ss_pred ECCCCeEEEEEecC---CcEEEEEecCCcEEEEEeCC-----CeEEEEEeCCceeeeecCCCCCCeEEEEEcc-CCCEEE
Q 000085 2148 SIRRGRLIRRLVGV---DAHAVSLSSEGVIMTWNKLQ-----HTLSSFTLNGVLVARAKLPLSGSIGCMEISL-DGHSAL 2218 (2342)
Q Consensus 2148 DLrTGklIrsL~gh---~vssLSfSpDG~IlVwdssd-----GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP-DGk~La 2218 (2342)
|+.+++........ .+..++|+|||+.+++.... +.+++|++.+........ .. ... +.|+| ||++++
T Consensus 222 d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~ 298 (396)
T 3c5m_A 222 NEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMV 298 (396)
T ss_dssp ETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEE
T ss_pred ECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEE
Confidence 98766533322221 25568999999977665432 348899886433322211 11 233 89999 999888
Q ss_pred EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCC-----------
Q 000085 2219 IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQ----------- 2287 (2342)
Q Consensus 2219 SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~----------- 2287 (2342)
+++.+ .- . . ... . .......++.|++||+.+++.. .+. .+..
T Consensus 299 ~~~~~-~p---~----~-~~~----------~------~~~~~~~~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~~~~~ 351 (396)
T 3c5m_A 299 GDGCD-AP---V----D-VAD----------A------DSYNIENDPFLYVLNTKAKSAQ-KLC-KHSTSWDVLDGDRQI 351 (396)
T ss_dssp EEECC-C----------------------------------CCCCCCEEEEEETTTTBCC-EEE-ECCCCCCCBTTBSST
T ss_pred EecCC-cc---e----e-ecc----------c------cccccCCCCcEEEEecccCceE-Ecc-CCCCccccccccccC
Confidence 76422 10 0 0 000 0 0000012578999999888753 333 3333
Q ss_pred CeEEEEEecCCCEEEEEeC-CCcEEEEe
Q 000085 2288 DITALALNKDNTNLLVSTA-DKQLIVFT 2314 (2342)
Q Consensus 2288 ~ItsLafSPDG~~LaSGSs-DGsIrVWD 2314 (2342)
.+..++|+|||+.|+.++. ++...+|.
T Consensus 352 ~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 352 THPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp TCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred CCCCceEccCCCeEEEEecCCCCceEEE
Confidence 2567899999999887764 56655555
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.31 E-value=1.8e-10 Score=135.88 Aligned_cols=217 Identities=9% Similarity=-0.009 Sum_probs=161.6
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
...++|+|+|+ +++++..++.|..|+..++ ...+..+...+.+++++++|+++++...++.|.+||..++.......
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~ 107 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIAD 107 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEEC
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEee
Confidence 34689999998 8888889999999999887 66677788889999999999988888788999999997765332211
Q ss_pred ---cCCCCCCccccccCCCCCceee----c--------------CCCccccccCCceEEecCCCCCeEEEEEecCCCEEE
Q 000085 2078 ---IEPSSGMGTPGNSIGSSTPANA----S--------------ADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2078 ---~~~~~~V~svs~SpDG~~Las~----s--------------~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa 2136 (2342)
......+..++++++|..+++. . ...+..++.......+..+......++|+|+++.++
T Consensus 108 ~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv 187 (296)
T 3e5z_A 108 SFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLV 187 (296)
T ss_dssp EETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEE
T ss_pred ccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEE
Confidence 1112345678899999877752 2 112233333344555666777889999999999888
Q ss_pred EEeCCCcEEEEECC-CCeE---EEEEec--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEE
Q 000085 2137 SCSDSSDLLLHSIR-RGRL---IRRLVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEI 2210 (2342)
Q Consensus 2137 SGS~DGtIrIWDLr-TGkl---IrsL~g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLaf 2210 (2342)
+.+.++.|.+||+. +|.. .+.+.. .....++++++|++.+.. ++.|.+|+..|..+..... +.. +++++|
T Consensus 188 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~-~~~-~~~~~f 263 (296)
T 3e5z_A 188 SDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLT-PQT-TSNLCF 263 (296)
T ss_dssp EETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEEC-SSC-CCEEEE
T ss_pred EeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEEC-CCC-ceeEEE
Confidence 88889999999997 5655 334411 124578999999977766 7889999998876665443 344 899999
Q ss_pred -ccCCCEEEEEe
Q 000085 2211 -SLDGHSALIGV 2221 (2342)
Q Consensus 2211 -SPDGk~LaSGS 2221 (2342)
+++++.|++++
T Consensus 264 ~~~d~~~L~v~t 275 (296)
T 3e5z_A 264 GGPEGRTLYMTV 275 (296)
T ss_dssp ESTTSCEEEEEE
T ss_pred ECCCCCEEEEEc
Confidence 58999888876
No 178
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.31 E-value=2e-10 Score=132.49 Aligned_cols=237 Identities=10% Similarity=0.019 Sum_probs=165.0
Q ss_pred eeEEEEEcCCCCEEE-EEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1998 SSAVVSITHDKEIIT-GGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1998 Svt~VafSpDGklLA-SGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
....++++++|++++ +...++.|.+|+..++........+...+.+++++++|+++++.. ++.|.+||..+.... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence 345689999999777 557789999999876543332233445688999999999777666 889999987653110 00
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
.......+.++++++++.++++...++.|.+|+..+.....
T Consensus 103 ---------------------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~ 143 (270)
T 1rwi_B 103 ---------------------------------------PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV 143 (270)
T ss_dssp ---------------------------------------CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE
T ss_pred ---------------------------------------ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe
Confidence 00122457899999999988888888999999876554332
Q ss_pred EEec--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccc
Q 000085 2157 RLVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNI 2234 (2342)
Q Consensus 2157 sL~g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~L 2234 (2342)
.... .....++++++|++++.+..++.|.+|+..+.........+...+.+++++++|..+++...
T Consensus 144 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~------------ 211 (270)
T 1rwi_B 144 LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN------------ 211 (270)
T ss_dssp CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT------------
T ss_pred eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC------------
Confidence 2211 23578999999998888777889999998875544333334467899999999976664421
Q ss_pred cccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2235 QGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2235 w~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
++.|.+||..+..... ....+...+.+++++++|+.+++...++.|++|+
T Consensus 212 -----------------------------~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 212 -----------------------------TNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp -----------------------------TSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred -----------------------------CCcEEEEcCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 3567888876554322 2213335789999999999888888999999999
Q ss_pred CCC
Q 000085 2315 DPA 2317 (2342)
Q Consensus 2315 i~s 2317 (2342)
.+.
T Consensus 262 ~~~ 264 (270)
T 1rwi_B 262 SLE 264 (270)
T ss_dssp CCG
T ss_pred CCC
Confidence 543
No 179
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.30 E-value=1.6e-10 Score=141.17 Aligned_cols=226 Identities=9% Similarity=0.071 Sum_probs=147.1
Q ss_pred EEEEEcC--CcEEEEec--CCcccce--ecc-cCCCCeEEEEecCCCCEEEEEeCCCceEEEecc-CCccccccccCCCC
Q 000085 2011 ITGGHVD--GSIKLLTS--DGAKTLE--TAS-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH-RAFTSRTGTIEPSS 2082 (2342)
Q Consensus 2011 LASGS~D--GsIrVWDl--~tgkll~--tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~-tg~~i~t~~~~~~~ 2082 (2342)
++.|++. +.|.+|++ .+++... ... ++...+..++|+|||++|++++.+ +|.+|++. ++......
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~------ 77 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA------ 77 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE------
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee------
Confidence 4555543 56888765 4554322 111 244568899999999999999988 99999987 54221100
Q ss_pred CCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCE--EEEEe-------------CCCcEEEE
Q 000085 2083 GMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGV--VVSCS-------------DSSDLLLH 2147 (2342)
Q Consensus 2083 ~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~l--LaSGS-------------~DGtIrIW 2147 (2342)
....+ +.+.+++|+|+|++ +++++ .+|++.+|
T Consensus 78 --------------------------------~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~ 124 (365)
T 1jof_A 78 --------------------------------SHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVF 124 (365)
T ss_dssp --------------------------------EEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEE
T ss_pred --------------------------------EeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEE
Confidence 00111 12344677888873 44543 68999999
Q ss_pred ECC-CCeEEEEEe------cCCcEEEEEecCCcEEEE-EeCCCeEEEEEeC--Ccee--eeecCC-CCCCeEEEEEccCC
Q 000085 2148 SIR-RGRLIRRLV------GVDAHAVSLSSEGVIMTW-NKLQHTLSSFTLN--GVLV--ARAKLP-LSGSIGCMEISLDG 2214 (2342)
Q Consensus 2148 DLr-TGklIrsL~------gh~vssLSfSpDG~IlVw-dssdGsI~I~dln--G~~L--~s~~~~-Hs~~ItsLafSPDG 2214 (2342)
++. +|+....+. ......++++|||+.++. +..++.|.+|++. |... .....+ |...+..++|+|||
T Consensus 125 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg 204 (365)
T 1jof_A 125 SVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG 204 (365)
T ss_dssp EECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS
T ss_pred ccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC
Confidence 997 576654443 234788999999986654 4446799999996 4332 112222 45679999999999
Q ss_pred CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC--CCeEE---EEEec------
Q 000085 2215 HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH--TLKVF---HVLKL------ 2283 (2342)
Q Consensus 2215 k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~--Tgk~L---~tL~l------ 2283 (2342)
+++++++. .++.|.+|++. +++.. ..+..
T Consensus 205 ~~l~v~~~----------------------------------------~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 244 (365)
T 1jof_A 205 NYLYALME----------------------------------------AGNRICEYVIDPATHMPVYTHHSFPLIPPGIP 244 (365)
T ss_dssp SEEEEEET----------------------------------------TTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred CEEEEEEC----------------------------------------CCCeEEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence 99987752 14578888654 56542 22221
Q ss_pred CCCC------CeEEEE-EecCCCEEEEEeCCC------cEEEEeCC
Q 000085 2284 GEGQ------DITALA-LNKDNTNLLVSTADK------QLIVFTDP 2316 (2342)
Q Consensus 2284 gHs~------~ItsLa-fSPDG~~LaSGSsDG------sIrVWDi~ 2316 (2342)
+|.. .+.+++ |+|||++|++++.+. .|.+|++.
T Consensus 245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 1222 588999 999999998776432 89999974
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.28 E-value=8.7e-11 Score=154.02 Aligned_cols=210 Identities=11% Similarity=0.027 Sum_probs=142.0
Q ss_pred cCCCCE-EEEEEc-CCcEEEEecC--Ccccceeccc-----CCCCeEEEEecCCCCEEEEEeCC----------CceEEE
Q 000085 2005 THDKEI-ITGGHV-DGSIKLLTSD--GAKTLETASG-----HCAPVTCLALSSDSNFLVTGSQD----------TTILLW 2065 (2342)
Q Consensus 2005 SpDGkl-LASGS~-DGsIrVWDl~--tgkll~tL~G-----Ht~~VtcLAfSPDG~~LaSGS~D----------GTVrVW 2065 (2342)
||||+. |+.++. +..|++|++. +......+.. |...+.+++|+|||+.|++++.| .+|.+|
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence 499998 776654 5567777765 3033445555 67789999999999999999887 589999
Q ss_pred eccC------CccccccccCCCCCCccccccCCCCCceeecCCC---------ccccccC--C---ce-EEecCCCCCeE
Q 000085 2066 RIHR------AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK---------SRRRRIE--G---PI-HVLRGHHREIL 2124 (2342)
Q Consensus 2066 Dl~t------g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~---------s~~~~i~--~---~l-~~L~GHs~~Vt 2124 (2342)
|+.+ +.. ..........+..+.++|||+.++....+. +..++.. . .. ....+|...+.
T Consensus 167 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~ 245 (662)
T 3azo_A 167 PLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA 245 (662)
T ss_dssp ETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred ECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence 9987 432 222203345667789999999997766442 2334443 2 23 33345678899
Q ss_pred EEEEecCCCEEEEEeCCC--cEEEEECCCCeEEEEEecCC----------cEEEEEecCCcEEEEEeCCCeEEEEEe--C
Q 000085 2125 CCCVSSDLGVVVSCSDSS--DLLLHSIRRGRLIRRLVGVD----------AHAVSLSSEGVIMTWNKLQHTLSSFTL--N 2190 (2342)
Q Consensus 2125 ~VafSPDg~lLaSGS~DG--tIrIWDLrTGklIrsL~gh~----------vssLSfSpDG~IlVwdssdGsI~I~dl--n 2190 (2342)
.++|+|||+++++++.|| .|.+||+.+++.......+. +..++++++|.+++.... +.+++|.+ .
T Consensus 246 ~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~ 324 (662)
T 3azo_A 246 QAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPE 324 (662)
T ss_dssp EEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETT
T ss_pred ceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECC
Confidence 999999999888888888 67777776777654433321 346888999999888877 88888854 4
Q ss_pred CceeeeecCCCCCCeEEEEEccCCCEEE
Q 000085 2191 GVLVARAKLPLSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2191 G~~L~s~~~~Hs~~ItsLafSPDGk~La 2218 (2342)
+..+... ..|...+.++. ++++..++
T Consensus 325 ~~~~~~l-~~~~~~~~~~~-s~~~~~~~ 350 (662)
T 3azo_A 325 SGELVDA-AGPWTEWAATL-TVSGTRAV 350 (662)
T ss_dssp TTEEEEC-CSSCCEEEEEE-EEETTEEE
T ss_pred CCcEEEe-cCCCCeEEEEE-ecCCCEEE
Confidence 4444332 33666777661 44555443
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.28 E-value=4.2e-10 Score=131.65 Aligned_cols=220 Identities=12% Similarity=0.157 Sum_probs=152.2
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEE-cCCCCEEEEEEc-CCcEEEEecCCcccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSI-THDKEIITGGHV-DGSIKLLTSDGAKTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~Vaf-SpDGklLASGS~-DGsIrVWDl~tgkll~ 2032 (2342)
++|...++...++.|++|+... ... +.+... ............+++ .+++++++++.. ++.|++|| .+++.+.
T Consensus 39 ~~g~l~v~~~~~~~i~~~d~~g-~~~--~~~~~~-~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~ 113 (286)
T 1q7f_A 39 AQNDIIVADTNNHRIQIFDKEG-RFK--FQFGEC-GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVR 113 (286)
T ss_dssp TTCCEEEEEGGGTEEEEECTTS-CEE--EEECCB-SSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEE
T ss_pred CCCCEEEEECCCCEEEEECCCC-cEE--EEeccc-CCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEE
Confidence 3455566656677888887542 111 111100 000112334567888 578887777654 89999999 5566666
Q ss_pred ecc-cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCC
Q 000085 2033 TAS-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG 2111 (2342)
Q Consensus 2033 tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~ 2111 (2342)
.+. .+...+.+++++++|+++++.+.++.|.+||.... .....
T Consensus 114 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~----------------------------------- 157 (286)
T 1q7f_A 114 KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKF----------------------------------- 157 (286)
T ss_dssp EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEE-----------------------------------
T ss_pred EecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEEEe-----------------------------------
Confidence 553 34567899999999998888888899999986431 11000
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC----CcEEEEEecCCcEEEEEeCCC-eEEE
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV----DAHAVSLSSEGVIMTWNKLQH-TLSS 2186 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh----~vssLSfSpDG~IlVwdssdG-sI~I 2186 (2342)
...++...+.+++++++++++++.+.++.|++||. +++.+..+..+ ....++++++|.+++.+..++ .|.+
T Consensus 158 ---~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~ 233 (286)
T 1q7f_A 158 ---GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI 233 (286)
T ss_dssp ---ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred ---CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEE
Confidence 00134456889999999998888888999999997 56777777543 367899999999999887775 9999
Q ss_pred EEeCCceeeeecCC-CCCCeEEEEEccCCCEEEE
Q 000085 2187 FTLNGVLVARAKLP-LSGSIGCMEISLDGHSALI 2219 (2342)
Q Consensus 2187 ~dlnG~~L~s~~~~-Hs~~ItsLafSPDGk~LaS 2219 (2342)
|+.++..+...... ....+.+++++|+|+++++
T Consensus 234 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs 267 (286)
T 1q7f_A 234 FTQDGQLISALESKVKHAQCFDVALMDDGSVVLA 267 (286)
T ss_dssp ECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred ECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE
Confidence 99888766554332 2335789999999987775
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.28 E-value=3.1e-10 Score=135.91 Aligned_cols=224 Identities=7% Similarity=-0.025 Sum_probs=145.2
Q ss_pred EEEEEcCCCCEEEEEE---------cCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC---Cc--eEEE
Q 000085 2000 AVVSITHDKEIITGGH---------VDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD---TT--ILLW 2065 (2342)
Q Consensus 2000 t~VafSpDGklLASGS---------~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D---GT--VrVW 2065 (2342)
...++ ||+.++... .++.|++||+.+++... + ..+.+++|+|||++|+.++.+ +. |.+|
T Consensus 18 ~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~ 90 (347)
T 2gop_A 18 SDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVA 90 (347)
T ss_dssp EEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEE
T ss_pred ccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEE
Confidence 34566 888766542 36789999999876543 3 568899999999999988754 34 6666
Q ss_pred eccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-----
Q 000085 2066 RIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD----- 2140 (2342)
Q Consensus 2066 Dl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~----- 2140 (2342)
++.++... .+..+.. +.+++|+|||+.|+.++.
T Consensus 91 ~~~~g~~~-----------------------------------------~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~ 128 (347)
T 2gop_A 91 DLETLSSK-----------------------------------------KILEAKN-IRSLEWNEDSRKLLIVGFKRRED 128 (347)
T ss_dssp ETTTTEEE-----------------------------------------EEEEESE-EEEEEECTTSSEEEEEEECCCC-
T ss_pred ECCCCceE-----------------------------------------EEEcCCC-ccceeECCCCCEEEEEEccCCCc
Confidence 66653211 1111222 777778888877776653
Q ss_pred ----------------------CCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCC------C-eEEEEEeCC
Q 000085 2141 ----------------------SSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQ------H-TLSSFTLNG 2191 (2342)
Q Consensus 2141 ----------------------DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssd------G-sI~I~dlnG 2191 (2342)
...|++||+.+++.++.+....+..++|+||| +++....+ . ...+|.+++
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~ 207 (347)
T 2gop_A 129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED 207 (347)
T ss_dssp --------CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET
T ss_pred CCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCC
Confidence 25799999999887444432267788999999 66655332 1 334444433
Q ss_pred ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEE
Q 000085 2192 VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLD 2271 (2342)
Q Consensus 2192 ~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWD 2271 (2342)
....... .+ ..+.++ +|||++|+.++.+.... ......|.+||
T Consensus 208 ~~~~~l~-~~-~~~~~~--spdg~~l~~~~~~~~~~---------------------------------~~~~~~l~~~d 250 (347)
T 2gop_A 208 GKEEKMF-EK-VSFYAV--DSDGERILLYGKPEKKY---------------------------------MSEHNKLYIYD 250 (347)
T ss_dssp TEEEEEE-EE-ESEEEE--EECSSCEEEEECCSSSC---------------------------------CCSSCEEEEEC
T ss_pred CceEEec-cC-cceeeE--CCCCCEEEEEEccccCC---------------------------------ccccceEEEEC
Confidence 2332222 23 455554 99999988776332200 00145788898
Q ss_pred CCCCeEEEEEecCCCCCeEE-EEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2272 LHTLKVFHVLKLGEGQDITA-LALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2272 L~Tgk~L~tL~lgHs~~Its-LafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+++... +..+|...+.. +.|+ |+ .+++++.|+.+++| ..
T Consensus 251 --~~~~~~-l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 251 --GKEVMG-ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp --SSCEEE-SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred --CCceEe-ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 666443 33256777886 9999 88 88899999999999 76
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.25 E-value=1e-08 Score=119.27 Aligned_cols=270 Identities=10% Similarity=0.024 Sum_probs=185.4
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee-cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET-ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t-L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
.+.+++++++|+++++...++.|.+||.. ++.... +..+...+.+++++++|.+.++...++.|..||... .. ...
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~-~~~ 92 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-II-KEY 92 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE-EEE
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cE-EEE
Confidence 35669999999988877668899999988 554322 233557799999999999888887789999999763 21 111
Q ss_pred -ccCCCCCCccccccCCCCCceeecCC-CccccccCCceEEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2077 -TIEPSSGMGTPGNSIGSSTPANASAD-KSRRRRIEGPIHVL--RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2077 -~~~~~~~V~svs~SpDG~~Las~s~D-~s~~~~i~~~l~~L--~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
.......+..+.+.++|...++...+ .+..++.......+ ..+...+.++++++++.+.++...++.|..||. ++
T Consensus 93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g 171 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SG 171 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC
T ss_pred eCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC
Confidence 11233456677888888766655433 34444443333322 234567899999999988888777899999999 77
Q ss_pred eEEEE-Eec--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC
Q 000085 2153 RLIRR-LVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229 (2342)
Q Consensus 2153 klIrs-L~g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~ 2229 (2342)
+.... +.. .....++++++|.+.+.+...+.+..|+..+.........+...+.+++++++|+..++..
T Consensus 172 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-------- 243 (299)
T 2z2n_A 172 DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEW-------- 243 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEET--------
T ss_pred cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEecc--------
Confidence 66543 221 2367889999999887777778899998865433221222557899999999998666441
Q ss_pred CcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEe-cCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLK-LGEGQDITALALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2230 i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~-lgHs~~ItsLafSPDG~~LaSGSsDG 2308 (2342)
.++.|.+||. +++. ..+. ..+...+.++++ ++|..+++.. .+
T Consensus 244 ---------------------------------~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~ 286 (299)
T 2z2n_A 244 ---------------------------------GANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CD 286 (299)
T ss_dssp ---------------------------------TTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TT
T ss_pred ---------------------------------CCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CC
Confidence 1456888888 4543 3332 144567999999 8888666554 67
Q ss_pred cEEEEeCC
Q 000085 2309 QLIVFTDP 2316 (2342)
Q Consensus 2309 sIrVWDi~ 2316 (2342)
.|..++..
T Consensus 287 ~l~~~~~~ 294 (299)
T 2z2n_A 287 KIGKLTLI 294 (299)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEcC
Confidence 77777744
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.24 E-value=9.6e-11 Score=155.85 Aligned_cols=241 Identities=12% Similarity=0.023 Sum_probs=154.9
Q ss_pred ceeEEEEEcCCCCEEE-----EEEcCCcEEEEecCCcccceecccCCCCe--EEEEecCCCCEEEEEeCCCc--------
Q 000085 1997 RSSAVVSITHDKEIIT-----GGHVDGSIKLLTSDGAKTLETASGHCAPV--TCLALSSDSNFLVTGSQDTT-------- 2061 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLA-----SGS~DGsIrVWDl~tgkll~tL~GHt~~V--tcLAfSPDG~~LaSGS~DGT-------- 2061 (2342)
..+..++|||||++|| .|+.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|.+
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence 3456799999999888 44445789999999988651 1122222 68999999999999999876
Q ss_pred -----eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE
Q 000085 2062 -----ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2062 -----VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa 2136 (2342)
|++|++.++.... ..+.....|...+.++.|+|||++++
T Consensus 199 ~~~~~v~~~~l~t~~~~~------------------------------------~lv~~~~~~~~~~~~~~~SpDG~~l~ 242 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKD------------------------------------TVVHERTGDPTTFLQSDLSRDGKYLF 242 (695)
T ss_dssp GGGCEEEEEETTSCGGGC------------------------------------EEEECCCCCTTCEEEEEECTTSCCEE
T ss_pred CCCCEEEEEECCCCchhc------------------------------------eEEEecCCCCEEEEEEEECCCCCEEE
Confidence 8899887642110 01122234566788999999999998
Q ss_pred EEeCCC----cEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEe---CCCeEEEEEeCCcee---eeecCCC-CCC
Q 000085 2137 SCSDSS----DLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNK---LQHTLSSFTLNGVLV---ARAKLPL-SGS 2204 (2342)
Q Consensus 2137 SGS~DG----tIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwds---sdGsI~I~dlnG~~L---~s~~~~H-s~~ 2204 (2342)
.++.++ .|++||..++.......... .....+ ++|.+++... .++.|.+|++.+... ......+ ...
T Consensus 243 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 321 (695)
T 2bkl_A 243 VYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSAS 321 (695)
T ss_dssp EEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCE
T ss_pred EEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCe
Confidence 877666 67777766665433333222 333334 6777444333 246788888754221 2222222 456
Q ss_pred eEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe--EEEEECCCCeEEEEEe
Q 000085 2205 IGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS--ICFLDLHTLKVFHVLK 2282 (2342)
Q Consensus 2205 ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs--IrIWDL~Tgk~L~tL~ 2282 (2342)
+..++++ ++.++++... |+. |.++++ +++....+.
T Consensus 322 l~~~~~~-~~~lv~~~~~-----------------------------------------dg~~~l~~~~~-~g~~~~~l~ 358 (695)
T 2bkl_A 322 LLSVSIV-GGHLSLEYLK-----------------------------------------DATSEVRVATL-KGKPVRTVQ 358 (695)
T ss_dssp EEEEEEE-TTEEEEEEEE-----------------------------------------TTEEEEEEEET-TCCEEEECC
T ss_pred EEEEEEE-CCEEEEEEEE-----------------------------------------CCEEEEEEEeC-CCCeeEEec
Confidence 8888888 5666665542 333 444454 355556665
Q ss_pred cCCCCCeEEEEEecCCCEEEEE----eCCCcEEEEeCCCCC
Q 000085 2283 LGEGQDITALALNKDNTNLLVS----TADKQLIVFTDPALS 2319 (2342)
Q Consensus 2283 lgHs~~ItsLafSPDG~~LaSG----SsDGsIrVWDi~sLs 2319 (2342)
..+...|..++++|++..|+.. ...++|++||..+..
T Consensus 359 ~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 359 LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 3336678888999999877733 345789999976543
No 185
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.19 E-value=2.2e-09 Score=127.59 Aligned_cols=213 Identities=12% Similarity=0.094 Sum_probs=164.3
Q ss_pred CCCCEEEEEEcCCcEEEEecCCcccceecccCC-CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCC
Q 000085 2006 HDKEIITGGHVDGSIKLLTSDGAKTLETASGHC-APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGM 2084 (2342)
Q Consensus 2006 pDGklLASGS~DGsIrVWDl~tgkll~tL~GHt-~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V 2084 (2342)
..+++|++++.|+.|++||.++|+.+.++..|. ..+.+++++|+|++++ +.++.|..||. +++.+..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~--------- 70 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWN--------- 70 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEE---------
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEE---------
Confidence 356789999999999999999999999988776 5789999999999999 45788999988 5432211
Q ss_pred ccccccCCCCCceeecCCCccccccCCceEEecCC-CCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeEEEEEecC-
Q 000085 2085 GTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH-HREILCCCVSSDLGVVVSCSD-SSDLLLHSIRRGRLIRRLVGV- 2161 (2342)
Q Consensus 2085 ~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH-s~~Vt~VafSPDg~lLaSGS~-DGtIrIWDLrTGklIrsL~gh- 2161 (2342)
+..+ ...+.++.+.++|+++++.+. ++.|..+|. +|+.+..+...
T Consensus 71 -------------------------------~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~ 118 (276)
T 3no2_A 71 -------------------------------IAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFET 118 (276)
T ss_dssp -------------------------------EECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECC
T ss_pred -------------------------------EcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccC
Confidence 1222 245778899999999999887 788888885 78888777521
Q ss_pred -------CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccc
Q 000085 2162 -------DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNI 2234 (2342)
Q Consensus 2162 -------~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~L 2234 (2342)
....++..++|.+++.+..++.+..|+.+|+.+-.... ...+.++.+.++|+.+++++.
T Consensus 119 ~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~------------ 184 (276)
T 3no2_A 119 GIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKL--SGTPFSSAFLDNGDCLVACGD------------ 184 (276)
T ss_dssp SCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC--SSCCCEEEECTTSCEEEECBT------------
T ss_pred CCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEEC--CCCccceeEcCCCCEEEEeCC------------
Confidence 13456789999999999889999999999877665543 245667888899998886641
Q ss_pred cccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC-----CCCCeEEEEEecCCCEEEEEe
Q 000085 2235 QGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG-----EGQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2235 w~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg-----Hs~~ItsLafSPDG~~LaSGS 2305 (2342)
++.|..+|..+|+.+..+... .-..+.++...++|..+++..
T Consensus 185 -----------------------------~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 185 -----------------------------AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp -----------------------------TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred -----------------------------CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 456899999999998888621 112378888999998887763
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.18 E-value=5.2e-09 Score=136.85 Aligned_cols=315 Identities=10% Similarity=0.081 Sum_probs=195.3
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecC--Ccccceeccc
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSD--GAKTLETASG 2036 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~--tgkll~tL~G 2036 (2342)
.+++...++.+.+++..++.... .+.. +. ....+.|+|||+++++++.|+.|.+||+. +++.+..+..
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~------~i~~---g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKT------VLDT---GY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEE------EEEC---SS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred EEEEeCCCCeEEEEECCCCeEEE------EEeC---CC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence 44566677889999876632211 1111 11 23358999999999999999999999996 7777777765
Q ss_pred CCCCeEEEEec----CCCCEEEEEeC-CCceEEEeccCCccccccccC---------C-CCCCccccccCCCCCceeecC
Q 000085 2037 HCAPVTCLALS----SDSNFLVTGSQ-DTTILLWRIHRAFTSRTGTIE---------P-SSGMGTPGNSIGSSTPANASA 2101 (2342)
Q Consensus 2037 Ht~~VtcLAfS----PDG~~LaSGS~-DGTVrVWDl~tg~~i~t~~~~---------~-~~~V~svs~SpDG~~Las~s~ 2101 (2342)
..+ ...++|+ |||+++++++. +++|.|+|..+.+.+...... + ...+..+..++++..++....
T Consensus 239 G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 239 GSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp CSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 444 5789999 69998887664 599999998887655543211 0 113445555666554433332
Q ss_pred CCc--cccccCC---ceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeEEEEEec-----CCcEEEE-Ee
Q 000085 2102 DKS--RRRRIEG---PIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIRRGRLIRRLVG-----VDAHAVS-LS 2169 (2342)
Q Consensus 2102 D~s--~~~~i~~---~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTGklIrsL~g-----h~vssLS-fS 2169 (2342)
+.. ..++... .............++.|+|+++++++++ .++.|.++|+.+++.+..+.. |....+. ++
T Consensus 318 ~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~ 397 (567)
T 1qks_A 318 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH 397 (567)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEE
T ss_pred CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeEC
Confidence 221 1122111 1111112334566889999999886655 678999999999998887764 2222222 57
Q ss_pred cCCc-EEEEE-eCCCeEEEEEeCC--------ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCC
Q 000085 2170 SEGV-IMTWN-KLQHTLSSFTLNG--------VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNS 2239 (2342)
Q Consensus 2170 pDG~-IlVwd-ssdGsI~I~dlnG--------~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~ 2239 (2342)
|++. +.+.. ..++.|.+++... +.+..... ....-..+..+|+++++.+...-+
T Consensus 398 p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~-~g~g~~~i~~~p~~~~l~v~~~~~--------------- 461 (567)
T 1qks_A 398 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA-LGGGSLFIKTHPNSQYLYVDATLN--------------- 461 (567)
T ss_dssp TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-SCSCCCCEECCTTCSEEEEECTTC---------------
T ss_pred CCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec-CCCCCEEEEeCCCCCeEEEecCCC---------------
Confidence 7744 33333 2457899998763 22222221 112223466788888887552100
Q ss_pred CCCCccccccccccccCCCCccCCCCeEEEEECCCC-----e-EEEEEec-------CCCCCeEEEEEecCCCEEEEEe-
Q 000085 2240 KQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL-----K-VFHVLKL-------GEGQDITALALNKDNTNLLVST- 2305 (2342)
Q Consensus 2240 ~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg-----k-~L~tL~l-------gHs~~ItsLafSPDG~~LaSGS- 2305 (2342)
++.. ..++|.|+|+.+. . .+..+.. .-...+..+.|+++|+++.++.
T Consensus 462 ---------~~~~----------~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~ 522 (567)
T 1qks_A 462 ---------PEAE----------ISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVW 522 (567)
T ss_dssp ---------SSHH----------HHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEE
T ss_pred ---------CCcc----------cCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEee
Confidence 0000 0257999998877 2 2233431 1245789999999999888763
Q ss_pred ----CCCcEEEEeCCCCC
Q 000085 2306 ----ADKQLIVFTDPALS 2319 (2342)
Q Consensus 2306 ----sDGsIrVWDi~sLs 2319 (2342)
.++.|.|+|..++.
T Consensus 523 ~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 523 NGKDQESALVVVDDKTLE 540 (567)
T ss_dssp CCTTSCCEEEEEETTTTE
T ss_pred cCCCCCCcEEEEECCCce
Confidence 37999999987764
No 187
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.17 E-value=2.4e-08 Score=116.18 Aligned_cols=270 Identities=11% Similarity=0.053 Sum_probs=183.0
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce-ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE-TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~-tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
...+++++++|++.++...++.|.+||.. ++... .+..+...+.++++.++|++.++...++.|..||.. +......
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~ 98 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYP 98 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEec
Confidence 34568999999988887778999999988 55433 233344679999999999988887778899999987 4332111
Q ss_pred ccCCCCCCccccccCCCCCceeecCC-CccccccCCceEEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASAD-KSRRRRIEGPIHVL--RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D-~s~~~~i~~~l~~L--~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
.......+..+++.++|...++...+ .+..++.......+ ......+.++++++++++.++...++.|..+|. +++
T Consensus 99 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 177 (300)
T 2qc5_A 99 LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGK 177 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCc
Confidence 22223456677788888766665433 33444433333322 234567899999999997777777889999998 666
Q ss_pred EEEEEe-c--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCC
Q 000085 2154 LIRRLV-G--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGS 2230 (2342)
Q Consensus 2154 lIrsL~-g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i 2230 (2342)
...... . .....++++++|.+.+.+...+.+..|+..+.........+...+.+++++++|+..++..
T Consensus 178 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~--------- 248 (300)
T 2qc5_A 178 LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEW--------- 248 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEET---------
T ss_pred EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEecc---------
Confidence 554221 1 2367889999999888877778899998866544432223456789999999998666442
Q ss_pred cccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 000085 2231 YDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQL 2310 (2342)
Q Consensus 2231 ~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsI 2310 (2342)
.++.|..||. +++............+.++++.++|..+++.. . .|
T Consensus 249 --------------------------------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i 293 (300)
T 2qc5_A 249 --------------------------------GANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KI 293 (300)
T ss_dssp --------------------------------TTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EE
T ss_pred --------------------------------CCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ce
Confidence 1356777777 44433221112345688999999998555544 4 77
Q ss_pred EEEe
Q 000085 2311 IVFT 2314 (2342)
Q Consensus 2311 rVWD 2314 (2342)
..++
T Consensus 294 ~~~~ 297 (300)
T 2qc5_A 294 GKLN 297 (300)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 7776
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.17 E-value=7.5e-10 Score=132.24 Aligned_cols=231 Identities=8% Similarity=0.030 Sum_probs=162.1
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEP 2080 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~ 2080 (2342)
+++|++++..++..+.++.++.| .++....+..+...+.+++|+++|++++++..++.|.+||..++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~------- 79 (333)
T 2dg1_A 10 TLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK------- 79 (333)
T ss_dssp BCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-------
T ss_pred eeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE-------
Confidence 36677777766666778888998 34556667777778899999999998888999999999998764211
Q ss_pred CCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCeEEE
Q 000085 2081 SSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS----SDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2081 ~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D----GtIrIWDLrTGklIr 2156 (2342)
.....+...+.++++++++++++++..+ +.|.+||..++....
T Consensus 80 ---------------------------------~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 80 ---------------------------------RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD 126 (333)
T ss_dssp ---------------------------------EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred ---------------------------------EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence 1112345679999999999988887776 789999998887654
Q ss_pred EEec----CCcEEEEEecCCcEEEEEeC------CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2157 RLVG----VDAHAVSLSSEGVIMTWNKL------QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2157 sL~g----h~vssLSfSpDG~IlVwdss------dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
.+.. ..+..++++++|.+++.+.. .+.+..++..+..+.... .+...+.+++|+|+|++++.+..
T Consensus 127 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~---- 201 (333)
T 2dg1_A 127 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTET---- 201 (333)
T ss_dssp EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEG----
T ss_pred EEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeC----
Confidence 4431 23678899999998887653 245555555543332221 12345789999999997765531
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC-CeEEEE-----E-ec-CCCCCeEEEEEecCC
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT-LKVFHV-----L-KL-GEGQDITALALNKDN 2298 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T-gk~L~t-----L-~l-gHs~~ItsLafSPDG 2298 (2342)
.++.|.+||+.+ +..+.. . .. ++ ..+..++++++|
T Consensus 202 ------------------------------------~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G 244 (333)
T 2dg1_A 202 ------------------------------------TANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD 244 (333)
T ss_dssp ------------------------------------GGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC
T ss_pred ------------------------------------CCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC
Confidence 135688888753 322211 1 10 22 467889999999
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 000085 2299 TNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2299 ~~LaSGSsDGsIrVWDi~ 2316 (2342)
..+++...++.|.+|+..
T Consensus 245 ~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 245 NLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp CEEEEEETTTEEEEECTT
T ss_pred CEEEEEcCCCEEEEECCC
Confidence 988888888999999864
No 189
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.16 E-value=7.5e-10 Score=148.48 Aligned_cols=243 Identities=13% Similarity=0.101 Sum_probs=154.2
Q ss_pred eeEEEEEcCCCCEEEEEEcC-----CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCc-----------
Q 000085 1998 SSAVVSITHDKEIITGGHVD-----GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT----------- 2061 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~D-----GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGT----------- 2061 (2342)
.+..++|||||++|+.++.+ ..|++||+.+|+.+.. ..+...+..++|+|| +.|+.++.|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 45668999999988877654 3599999999987543 112222467899999 99998887765
Q ss_pred ---eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2062 ---ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSC 2138 (2342)
Q Consensus 2062 ---VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSG 2138 (2342)
|.+|++.++.... ..+.....|...+..+.|+|||++|+..
T Consensus 242 ~~~v~~~~lgt~~~~~------------------------------------~lv~~~~~~~~~~~~~~~SpDG~~l~~~ 285 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSAD------------------------------------QPVFATPELPKRGHGASVSSDGRWVVIT 285 (741)
T ss_dssp CCEEEEEETTSCGGGC------------------------------------EEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred CCEEEEEECCCCchhC------------------------------------EEEeccCCCCeEEEEEEECCCCCEEEEE
Confidence 6666665431100 0111112334458899999999998877
Q ss_pred eCCC-----cEEEEECCCC--eEEEEEecCC-cEEEEEecCCcEEEEEeC----CCeEEEEEeCC--ceeeeecCCCCCC
Q 000085 2139 SDSS-----DLLLHSIRRG--RLIRRLVGVD-AHAVSLSSEGVIMTWNKL----QHTLSSFTLNG--VLVARAKLPLSGS 2204 (2342)
Q Consensus 2139 S~DG-----tIrIWDLrTG--klIrsL~gh~-vssLSfSpDG~IlVwdss----dGsI~I~dlnG--~~L~s~~~~Hs~~ 2204 (2342)
+.++ .|++||+.++ ++.+.+..+. .....++++|..+++... .+.|.++++.+ .........+...
T Consensus 286 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~ 365 (741)
T 1yr2_A 286 SSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN 365 (741)
T ss_dssp EECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE
T ss_pred EEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe
Confidence 7544 8999999887 4144454332 222234588887776654 34588888875 2333333334555
Q ss_pred eEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC
Q 000085 2205 IGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG 2284 (2342)
Q Consensus 2205 ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg 2284 (2342)
+..+.++ ++.++++...++. ..|.++|+ +++....+...
T Consensus 366 l~~~~~~-~~~lv~~~~~dg~---------------------------------------~~l~~~~~-~g~~~~~l~~~ 404 (741)
T 1yr2_A 366 LESVGIA-GNRLFASYIHDAK---------------------------------------SQVLAFDL-DGKPAGAVSLP 404 (741)
T ss_dssp EEEEEEE-BTEEEEEEEETTE---------------------------------------EEEEEEET-TSCEEEECBCS
T ss_pred EEEEEEE-CCEEEEEEEECCE---------------------------------------EEEEEEeC-CCCceeeccCC
Confidence 6777777 4455555442211 23555565 45555666533
Q ss_pred CCCCeEEEEEecCCCEEEEE----eCCCcEEEEeCCCCC
Q 000085 2285 EGQDITALALNKDNTNLLVS----TADKQLIVFTDPALS 2319 (2342)
Q Consensus 2285 Hs~~ItsLafSPDG~~LaSG----SsDGsIrVWDi~sLs 2319 (2342)
+...|..++++|++..|+.. ...++|++||..+..
T Consensus 405 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 405 GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 46678999999998766633 345789999976543
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.15 E-value=2.6e-09 Score=129.29 Aligned_cols=236 Identities=11% Similarity=0.015 Sum_probs=159.9
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
..+++. ++++.++...++.|.+||..+++.+.++.. ......++++++++..++...+++|.+||..++........
T Consensus 47 ~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~- 123 (328)
T 3dsm_A 47 QSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC- 123 (328)
T ss_dssp EEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC-
T ss_pred eEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc-
Confidence 345553 455666666789999999999999888853 45688999999985555555899999999987643221100
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeEEEEE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTGklIrsL 2158 (2342)
.. ..++......+++ .++.++++.. .+++|.++|+.+++.+.++
T Consensus 124 ------------------------------g~----~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 124 ------------------------------PD----MDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp ------------------------------TT----CCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred ------------------------------CC----ccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 00 0011123445666 3444444443 4899999999999998888
Q ss_pred ec-CCcEEEEEecCCcEEEEEeCC----------CeEEEEEeCCceee-eecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2159 VG-VDAHAVSLSSEGVIMTWNKLQ----------HTLSSFTLNGVLVA-RAKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2159 ~g-h~vssLSfSpDG~IlVwdssd----------GsI~I~dlnG~~L~-s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
.. .....++++++|++++.+..+ +.+.+++.....+. ....+.......++++|++++++++.
T Consensus 169 ~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~----- 243 (328)
T 3dsm_A 169 TIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN----- 243 (328)
T ss_dssp ECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-----
T ss_pred EcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-----
Confidence 64 335678899999977766543 68999998644333 33333334789999999999998662
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec-CCCCCeEEEEEec-CCCEEEEE
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL-GEGQDITALALNK-DNTNLLVS 2304 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l-gHs~~ItsLafSP-DG~~LaSG 2304 (2342)
+.|.+||..+++....... .+.....+++++| ++..+++.
T Consensus 244 --------------------------------------~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 244 --------------------------------------NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp --------------------------------------SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred --------------------------------------cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 2478888887765321110 1245689999999 45555555
Q ss_pred ----eCCCcEEEEeCC
Q 000085 2305 ----TADKQLIVFTDP 2316 (2342)
Q Consensus 2305 ----SsDGsIrVWDi~ 2316 (2342)
..++.|.+|+..
T Consensus 286 ~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 286 AIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CTTSSSEEEEEEECTT
T ss_pred ccccccCCEEEEECCC
Confidence 578999999965
No 191
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.14 E-value=1.8e-08 Score=118.73 Aligned_cols=237 Identities=9% Similarity=0.073 Sum_probs=160.8
Q ss_pred eEEEEEcCCCCEEEE-------EEcCCcEEEEecCCcccceecc----cCCCCeEEEEecCC-CCEEEEEeCCCceEEEe
Q 000085 1999 SAVVSITHDKEIITG-------GHVDGSIKLLTSDGAKTLETAS----GHCAPVTCLALSSD-SNFLVTGSQDTTILLWR 2066 (2342)
Q Consensus 1999 vt~VafSpDGklLAS-------GS~DGsIrVWDl~tgkll~tL~----GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWD 2066 (2342)
...++|+++|+++++ +..++.|.+||..+++...... ++...+.+++++++ |+++++.. ++.|.+||
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d 98 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEe
Confidence 456899999998888 6778999999988876543222 35577999999999 66555544 44788898
Q ss_pred ccCCccccc-cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC----
Q 000085 2067 IHRAFTSRT-GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS---- 2141 (2342)
Q Consensus 2067 l~tg~~i~t-~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D---- 2141 (2342)
.. +..... .. . .. ..+...+.+++++++|++.++...+
T Consensus 99 ~~-g~~~~~~~~------------~-------------------~~-----~~~~~~~~~i~~d~~g~l~v~~~~~~~~~ 141 (314)
T 1pjx_A 99 TD-GTFEEIAKK------------D-------------------SE-----GRRMQGCNDCAFDYEGNLWITAPAGEVAP 141 (314)
T ss_dssp TT-SCEEECCSB------------C-------------------TT-----SCBCBCCCEEEECTTSCEEEEECBCBCTT
T ss_pred CC-CCEEEEEec------------c-------------------CC-----CccccCCcCEEECCCCCEEEEecCccccc
Confidence 77 432110 00 0 00 0112457789999999888777665
Q ss_pred -----------CcEEEEECCCCeEEEEEec-CCcEEEEEe----cCCcE-EEEEeCCCeEEEEEeC--Ccee----eeec
Q 000085 2142 -----------SDLLLHSIRRGRLIRRLVG-VDAHAVSLS----SEGVI-MTWNKLQHTLSSFTLN--GVLV----ARAK 2198 (2342)
Q Consensus 2142 -----------GtIrIWDLrTGklIrsL~g-h~vssLSfS----pDG~I-lVwdssdGsI~I~dln--G~~L----~s~~ 2198 (2342)
+.|..||.. ++....... .....++++ ++|.. ++.+..++.|.+|+.. +... ....
T Consensus 142 ~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 220 (314)
T 1pjx_A 142 ADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI 220 (314)
T ss_dssp SCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred ccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC
Confidence 578888876 655443322 235678899 99964 4555667889999875 3211 1111
Q ss_pred CCCC-CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE
Q 000085 2199 LPLS-GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV 2277 (2342)
Q Consensus 2199 ~~Hs-~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~ 2277 (2342)
..+. ..+..++++++|+++++... ++.|.+||..+++.
T Consensus 221 ~~~~~~~p~~i~~d~~G~l~v~~~~-----------------------------------------~~~i~~~d~~~g~~ 259 (314)
T 1pjx_A 221 PGTHEGGADGMDFDEDNNLLVANWG-----------------------------------------SSHIEVFGPDGGQP 259 (314)
T ss_dssp CCCSSCEEEEEEEBTTCCEEEEEET-----------------------------------------TTEEEEECTTCBSC
T ss_pred CCCCCCCCCceEECCCCCEEEEEcC-----------------------------------------CCEEEEEcCCCCcE
Confidence 1133 56889999999988876531 45789999887776
Q ss_pred EEEEecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCC
Q 000085 2278 FHVLKLGEGQDITALALNKDNTNLLVS-TADKQLIVFTDP 2316 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPDG~~LaSG-SsDGsIrVWDi~ 2316 (2342)
+..+. .+...+.+++|+++|+.|+++ ..++.|..|+..
T Consensus 260 ~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 260 KMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp SEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred eEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 66666 455789999999999966555 567899999954
No 192
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.12 E-value=4.5e-09 Score=126.86 Aligned_cols=215 Identities=11% Similarity=0.036 Sum_probs=142.7
Q ss_pred CceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc-cceec---------c
Q 000085 1966 GTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK-TLETA---------S 2035 (2342)
Q Consensus 1966 D~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk-ll~tL---------~ 2035 (2342)
++.+.+|+..++..... +..........++++++|+++++...++.|++||.+... .+..+ .
T Consensus 68 ~~~i~~~d~~~g~~~~~--------~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~ 139 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQS--------SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQ 139 (329)
T ss_dssp SCCEEEECTTTCCEEEE--------ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCST
T ss_pred CCcEEEEECCCCeEEec--------cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCc
Confidence 45677887654322111 111233445679999999999999889999999986542 44444 3
Q ss_pred cCCCCeEEEEecC-CCCEEEEEe-CCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2036 GHCAPVTCLALSS-DSNFLVTGS-QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2036 GHt~~VtcLAfSP-DG~~LaSGS-~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
++.....+++++| ++.++++.+ .++.|++|+.. +........ .+..+
T Consensus 140 ~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~~~-------------------~g~~~----------- 188 (329)
T 3fvz_A 140 NHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQWGE-------------------ESSGS----------- 188 (329)
T ss_dssp TCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEECE-------------------ECCSS-----------
T ss_pred cccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEecc-------------------CCCCC-----------
Confidence 4556789999999 788888887 69999999943 322211100 00000
Q ss_pred EEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEecC----CcEEEEEecCCcEEEEE-------eCC
Q 000085 2114 HVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGV----DAHAVSLSSEGVIMTWN-------KLQ 2181 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh----~vssLSfSpDG~IlVwd-------ssd 2181 (2342)
....++-.....++++|+ +.++++...++.|++||..+|+.+..+... ....++++| |.++..+ ...
T Consensus 189 ~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~ 267 (329)
T 3fvz_A 189 SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEP 267 (329)
T ss_dssp SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCC
T ss_pred CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCC
Confidence 000123345789999998 777788888999999999999999988542 367788888 4444333 334
Q ss_pred CeEEEEEeC-Cceeeeec--CCCCCCeEEEEEccCCCEEEEE
Q 000085 2182 HTLSSFTLN-GVLVARAK--LPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2182 GsI~I~dln-G~~L~s~~--~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
..+.+|+.. |..+.... ..+...+.+++++|+|..+++.
T Consensus 268 ~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad 309 (329)
T 3fvz_A 268 VQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGD 309 (329)
T ss_dssp CCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEE
T ss_pred cEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEE
Confidence 578888865 54444322 2366789999999999655544
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.10 E-value=7.2e-09 Score=122.22 Aligned_cols=234 Identities=9% Similarity=0.070 Sum_probs=159.2
Q ss_pred cceecccCCCCeEEEEecCCCC-EEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecC-CCcccc
Q 000085 2030 TLETASGHCAPVTCLALSSDSN-FLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASA-DKSRRR 2107 (2342)
Q Consensus 2030 ll~tL~GHt~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~-D~s~~~ 2107 (2342)
.+..+..+.....+++|+|+|+ +++++..++.|..|+..++ .... ......+..++++++|..+++... ..+..+
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 3445555666788999999998 7888889999999999876 2222 234455778889999987766654 344555
Q ss_pred cc-CCceEEecC-----CCCCeEEEEEecCCCEEEEE----e-------------CCCcEEEEECCCCeEEEEEecC-Cc
Q 000085 2108 RI-EGPIHVLRG-----HHREILCCCVSSDLGVVVSC----S-------------DSSDLLLHSIRRGRLIRRLVGV-DA 2163 (2342)
Q Consensus 2108 ~i-~~~l~~L~G-----Hs~~Vt~VafSPDg~lLaSG----S-------------~DGtIrIWDLrTGklIrsL~gh-~v 2163 (2342)
+. ......+.. ....+.+++++++|+++++. + ..+.|..+|.. ++........ ..
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~ 174 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP 174 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC
Confidence 54 233322221 12356789999999988873 3 13456666655 5543333222 35
Q ss_pred EEEEEecCCcEEEEEeCCCeEEEEEeC--Cce-e-eeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCC
Q 000085 2164 HAVSLSSEGVIMTWNKLQHTLSSFTLN--GVL-V-ARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNS 2239 (2342)
Q Consensus 2164 ssLSfSpDG~IlVwdssdGsI~I~dln--G~~-L-~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~ 2239 (2342)
..+++++||++++.+..++.|.+|++. |.. . ......+...+.+++++++|+++++.
T Consensus 175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~------------------- 235 (296)
T 3e5z_A 175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA------------------- 235 (296)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-------------------
T ss_pred ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-------------------
Confidence 789999999988666777899999985 332 1 11112245667889999999876644
Q ss_pred CCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEE-ecCCCEEEEEeCCCcEEEEe
Q 000085 2240 KQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALAL-NKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2240 ~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLaf-SPDG~~LaSGSsDGsIrVWD 2314 (2342)
++.|.+||.. ++.+..+. .+.. +++++| +|+++.|++++.++ +..++
T Consensus 236 ------------------------~~~v~~~~~~-g~~~~~~~-~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~ 283 (296)
T 3e5z_A 236 ------------------------GDGVHVLTPD-GDELGRVL-TPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIE 283 (296)
T ss_dssp ------------------------TTEEEEECTT-SCEEEEEE-CSSC-CCEEEEESTTSCEEEEEETTE-EEEEE
T ss_pred ------------------------CCeEEEECCC-CCEEEEEE-CCCC-ceeEEEECCCCCEEEEEcCCe-EEEEE
Confidence 2458999986 77777777 4555 899999 58999999988764 44444
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.08 E-value=3.4e-08 Score=122.55 Aligned_cols=290 Identities=9% Similarity=0.027 Sum_probs=180.9
Q ss_pred cCCCCEEEEEEc--CC---cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe----------CCCceEEEeccC
Q 000085 2005 THDKEIITGGHV--DG---SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS----------QDTTILLWRIHR 2069 (2342)
Q Consensus 2005 SpDGklLASGS~--DG---sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS----------~DGTVrVWDl~t 2069 (2342)
.|+++++..... .+ +|.+||..+++.+.++.....+ .++++|||++++.+. .+++|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 466665554432 22 8899999999988877755444 899999999998876 368899999987
Q ss_pred CccccccccC-C-----CCCCccccccCCCCCceeecCC---Cccccc-cCCceEE-ecCCCCCeEEEEEecCC-CEEEE
Q 000085 2070 AFTSRTGTIE-P-----SSGMGTPGNSIGSSTPANASAD---KSRRRR-IEGPIHV-LRGHHREILCCCVSSDL-GVVVS 2137 (2342)
Q Consensus 2070 g~~i~t~~~~-~-----~~~V~svs~SpDG~~Las~s~D---~s~~~~-i~~~l~~-L~GHs~~Vt~VafSPDg-~lLaS 2137 (2342)
.+...+.... . ......+.++|||+.+.+.... .+..++ ..+.+.. +.. . .|+.+.+++ ..+++
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD~t~~~~~~~i~~-~---~~~~~~~~~~~~~~~ 182 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS-P---TCYHIHPGAPSTFYL 182 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEECCCCEEeEEcCC-C---ceEEEEeCCCceEEE
Confidence 6554443211 0 1234578899999998776532 223333 1122222 211 1 234555654 45677
Q ss_pred EeCCCcEEEEECCCCeEEEEEe------cCCc--EEEEEecCCcEEEEEeCCCeEEEEEeCCcee---eeecC------C
Q 000085 2138 CSDSSDLLLHSIRRGRLIRRLV------GVDA--HAVSLSSEGVIMTWNKLQHTLSSFTLNGVLV---ARAKL------P 2200 (2342)
Q Consensus 2138 GS~DGtIrIWDLrTGklIrsL~------gh~v--ssLSfSpDG~IlVwdssdGsI~I~dlnG~~L---~s~~~------~ 2200 (2342)
.+.||.+.++|. +++.+.... +... ....+.+++.-+++....+.+.++++.+... ..... .
T Consensus 183 ~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~ 261 (373)
T 2mad_H 183 LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKA 261 (373)
T ss_pred EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccc
Confidence 888999999999 887764332 1111 1234566665555555667777777753211 11000 0
Q ss_pred ---CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE
Q 000085 2201 ---LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV 2277 (2342)
Q Consensus 2201 ---Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~ 2277 (2342)
.......+.+++|++.++++...+.. +.. ...++.|.++|..+++.
T Consensus 262 ~~~~p~g~~~~~~s~d~~~lyV~~~~~~~--------~~~-----------------------~~~~~~V~VID~~t~~v 310 (373)
T 2mad_H 262 DTWRPGGWQQVAYLKSSDGIYLLTSEQSA--------WKL-----------------------HAAAKEVTSVTGLVGQT 310 (373)
T ss_pred cceecCceEeEEECCCCCEEEEEeccCCc--------ccc-----------------------cCCCCeEEEEECCCCEE
Confidence 11234447788888877766422110 000 00146899999999999
Q ss_pred EEEEecCCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCChhhhhhhhhccccCCCc
Q 000085 2278 FHVLKLGEGQDITALALNKDNT-NLLVST-ADKQLIVFTDPALSLKVVDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPDG~-~LaSGS-sDGsIrVWDi~sLs~k~LdQLLk~GWegDGL 2336 (2342)
+.++..++ ...+++|+|||+ .++++. .++.|.|||..+.+ .+..+...|-.+.+|
T Consensus 311 v~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~--vv~~i~~vG~~P~~~ 367 (373)
T 2mad_H 311 SSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD--QDQSTVELGSGPQVL 367 (373)
T ss_pred EEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC--EEeeecCCCCCCcEE
Confidence 99998443 589999999999 777777 58999999977664 334434455555554
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.03 E-value=2.2e-08 Score=115.43 Aligned_cols=217 Identities=6% Similarity=-0.002 Sum_probs=143.9
Q ss_pred cCCCeEE-ecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1955 QHGKASA-SPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1955 ~~Gk~La-SsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
++|...+ +...++.|.+|+..+... ..+ ...+......++++++|+++++.. ++.|.+||..+......
T Consensus 33 ~~g~l~v~~~~~~~~i~~~~~~~~~~---~~~------~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 33 SAGNVYVTSEGMYGRVVKLATGSTGT---TVL------PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp TTCCEEEEECSSSCEEEEECC--------EEC------CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CCCCEEEEccCCCCcEEEecCCCccc---ceE------eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 3455455 445566788887443110 000 011122344589999999777665 88999999876544322
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
.......+.+++++++|+++++...++.|.+|+..+....
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~---------------------------------------- 142 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT---------------------------------------- 142 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE----------------------------------------
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE----------------------------------------
Confidence 2233367899999999998888888889999965432100
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
.....+...+.+++++++++++++...++.|.+||..++........ .....++++++|.+++.+..++.|..|+..+
T Consensus 143 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 143 VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 00011223567889999999888877889999999887665443222 3467899999998888887788999999887
Q ss_pred ceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2192 VLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2192 ~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.........+...+.+++++++|+.+++..
T Consensus 223 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 223 TTSTVLPFTGLNTPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp SCCEECCCCSCSCEEEEEECTTCCEEEEEG
T ss_pred CcceeeccCCCCCceeEEECCCCCEEEEEC
Confidence 654433323446789999999998666553
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.03 E-value=9.9e-08 Score=110.88 Aligned_cols=237 Identities=8% Similarity=-0.017 Sum_probs=164.9
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCC-CccccccCCce
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASAD-KSRRRRIEGPI 2113 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D-~s~~~~i~~~l 2113 (2342)
..+...+.+++++++|+..++...++.|.+||.. +.............+..++++++|...++...+ .+..++.....
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~ 89 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGII 89 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcE
Confidence 3455679999999999988877778999999988 432221122234566778888888877665533 34455544333
Q ss_pred EEec--CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec---CCcEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2114 HVLR--GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG---VDAHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2114 ~~L~--GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g---h~vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
..+. .+...+.++++++++.+.++...++.|.+||. +++....... .....++++++|.+.+.+...+.+..|+
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 168 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT 168 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence 3332 34567899999999998888878899999998 6655433221 3467889999999888777778899998
Q ss_pred eCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEE
Q 000085 2189 LNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSIC 2268 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIr 2268 (2342)
.++.........+...+.+++++++|.+.++.. .++.|.
T Consensus 169 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-----------------------------------------~~~~i~ 207 (299)
T 2z2n_A 169 ESGDITEFKIPTPASGPVGITKGNDDALWFVEI-----------------------------------------IGNKIG 207 (299)
T ss_dssp TTCCEEEEECSSTTCCEEEEEECTTSSEEEEET-----------------------------------------TTTEEE
T ss_pred CCCcEEEeeCCCCCCcceeEEECCCCCEEEEcc-----------------------------------------CCceEE
Confidence 855443321222456788999999998766442 135688
Q ss_pred EEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2269 FLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2269 IWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
+||. +++........+...+.+++++++|+.+++...++.|.+|+.
T Consensus 208 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 208 RITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred EECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 8888 666433222134567899999999986666667889999995
No 197
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.00 E-value=7.9e-09 Score=137.49 Aligned_cols=216 Identities=14% Similarity=0.023 Sum_probs=139.3
Q ss_pred ecCCCeEE-----ecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCc---------
Q 000085 1954 FQHGKASA-----SPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGS--------- 2019 (2342)
Q Consensus 1954 f~~Gk~La-----SsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGs--------- 2019 (2342)
.++|+.++ +++.+..|++|+..++.... ...+ ..+. ...++|+|||+.|+.++.|..
T Consensus 129 SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~----~~~~----~~~~-~~~~~wspDg~~l~~~~~d~~~~~~~~~~~ 199 (695)
T 2bkl_A 129 SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK----VDVI----EGGK-YATPKWTPDSKGFYYEWLPTDPSIKVDERP 199 (695)
T ss_dssp CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS----SCCB----SCCT-TCCCEECTTSSEEEEEECCCCTTSCGGGGG
T ss_pred CCCCCEEEEEECCCCCceEEEEEEECCCCCCcC----Cccc----Cccc-ccceEEecCCCEEEEEEecCCCCCccccCC
Confidence 35677777 56666899999987743220 1111 1111 134899999999999988876
Q ss_pred ----EEEEecCCccc----ceecccCCCCeEEEEecCCCCEEEEEeCCC----ceEEEeccCCccccccccCCCCCCccc
Q 000085 2020 ----IKLLTSDGAKT----LETASGHCAPVTCLALSSDSNFLVTGSQDT----TILLWRIHRAFTSRTGTIEPSSGMGTP 2087 (2342)
Q Consensus 2020 ----IrVWDl~tgkl----l~tL~GHt~~VtcLAfSPDG~~LaSGS~DG----TVrVWDl~tg~~i~t~~~~~~~~V~sv 2087 (2342)
|++|++.+++. +.....|...+.++.|+|||++|+.++.++ .|.+|+..++
T Consensus 200 ~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~----------------- 262 (695)
T 2bkl_A 200 GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK----------------- 262 (695)
T ss_dssp GGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-----------------
T ss_pred CCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-----------------
Confidence 99999988763 333345667899999999999998887665 4444433221
Q ss_pred cccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCCCeE---EEEEecC
Q 000085 2088 GNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS---DSSDLLLHSIRRGRL---IRRLVGV 2161 (2342)
Q Consensus 2088 s~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS---~DGtIrIWDLrTGkl---IrsL~gh 2161 (2342)
....+..+...+....+ +++++++++. .++.|.+||+.++.. ...+..+
T Consensus 263 ------------------------~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 317 (695)
T 2bkl_A 263 ------------------------DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED 317 (695)
T ss_dssp ------------------------SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC
T ss_pred ------------------------ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC
Confidence 12223344455556656 5566444444 258899999988753 3333332
Q ss_pred -C--cEEEEEecCCcEEEEEeCCCeEEEEEe--CCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2162 -D--AHAVSLSSEGVIMTWNKLQHTLSSFTL--NGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2162 -~--vssLSfSpDG~IlVwdssdGsI~I~dl--nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
. +..++++ ++.+++....++..++|.+ .|..+.....++.+.|..+.++|++..++...
T Consensus 318 ~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ 381 (695)
T 2bkl_A 318 SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF 381 (695)
T ss_dssp SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE
T ss_pred CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE
Confidence 2 4556777 6777777777887776655 46555444333467788888999998776543
No 198
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.99 E-value=1.2e-07 Score=123.99 Aligned_cols=229 Identities=9% Similarity=0.001 Sum_probs=162.7
Q ss_pred CCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEecc--CCccccccccCCCCC
Q 000085 2006 HDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH--RAFTSRTGTIEPSSG 2083 (2342)
Q Consensus 2006 pDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~--tg~~i~t~~~~~~~~ 2083 (2342)
+.+.++++...+++|.++|..+++.+.++.... .+.++.|+|||+++++++.|+.|.+||+. +...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~----------- 232 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT----------- 232 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-----------
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-----------
Confidence 344567777889999999999999988876433 56799999999999999999999999985 3211
Q ss_pred CccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEe----cCCCEEEEEe-CCCcEEEEECCCCeEEEEE
Q 000085 2084 MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVS----SDLGVVVSCS-DSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafS----PDg~lLaSGS-~DGtIrIWDLrTGklIrsL 2158 (2342)
+..+... .....++|+ |||+++++++ .+++|.++|..+.+.++++
T Consensus 233 -----------------------------v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i 282 (567)
T 1qks_A 233 -----------------------------VAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 282 (567)
T ss_dssp -----------------------------EEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE
T ss_pred -----------------------------eEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 1122221 235689999 6999887666 4699999999999999887
Q ss_pred ecC-------------CcEEEEEecCCcEEEEEe-CCCeEEEEEeCCc-eeeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2159 VGV-------------DAHAVSLSSEGVIMTWNK-LQHTLSSFTLNGV-LVARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2159 ~gh-------------~vssLSfSpDG~IlVwds-sdGsI~I~dlnG~-~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
... .+..+..++++..++... .+|.|.+++.... .+............++.|+|||++++++..
T Consensus 283 ~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~- 361 (567)
T 1qks_A 283 STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN- 361 (567)
T ss_dssp ECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG-
T ss_pred eccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC-
Confidence 532 235677788877665554 4588888876532 122112224456778999999999988752
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec-C---CCCCeEEEEEecCCC
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL-G---EGQDITALALNKDNT 2299 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l-g---Hs~~ItsLafSPDG~ 2299 (2342)
.++.|.++|+.+++.+..+.. + |.+.-.. -++|++.
T Consensus 362 ---------------------------------------~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g 401 (567)
T 1qks_A 362 ---------------------------------------ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFG 401 (567)
T ss_dssp ---------------------------------------GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTE
T ss_pred ---------------------------------------CCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCC
Confidence 146799999999998888875 2 3221111 2688855
Q ss_pred EEE-EEe-CCCcEEEEeCCC
Q 000085 2300 NLL-VST-ADKQLIVFTDPA 2317 (2342)
Q Consensus 2300 ~La-SGS-sDGsIrVWDi~s 2317 (2342)
.+. ++. .++.|.|++...
T Consensus 402 ~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 402 PVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEEEBSSSSEEEEEECCT
T ss_pred cEEEeCCCCCCeEEEecCCC
Confidence 554 443 568999999765
No 199
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.98 E-value=9.6e-08 Score=119.83 Aligned_cols=239 Identities=10% Similarity=0.061 Sum_probs=163.0
Q ss_pred cceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCC--ceEEEeccCCccc
Q 000085 1996 IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDT--TILLWRIHRAFTS 2073 (2342)
Q Consensus 1996 I~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DG--TVrVWDl~tg~~i 2073 (2342)
......++|+++|+++++...++.|++||..+++......... ... ++|+++++.|+.+..++ .|.+|+...+...
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4456779999999988888888999999998877655544432 233 99999999999998876 6777776543110
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG-HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G-Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
.. +..+.. +...+.+++++|++..|+.+..++.|+.||..++
T Consensus 208 ~~-------------------------------------~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~ 250 (409)
T 3hrp_A 208 TR-------------------------------------IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ 250 (409)
T ss_dssp EE-------------------------------------EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC
T ss_pred EE-------------------------------------eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC
Confidence 00 000111 3355678999996555666777899999999877
Q ss_pred eEEEE----EecC-C-c-E-EEEEec-CCcEEEEEeCCCeEEEEEeCCceeeeecCC-------------CCCCeEEEEE
Q 000085 2153 RLIRR----LVGV-D-A-H-AVSLSS-EGVIMTWNKLQHTLSSFTLNGVLVARAKLP-------------LSGSIGCMEI 2210 (2342)
Q Consensus 2153 klIrs----L~gh-~-v-s-sLSfSp-DG~IlVwdssdGsI~I~dlnG~~L~s~~~~-------------Hs~~ItsLaf 2210 (2342)
..... ..+. . . . .+++++ +|.+++.+...+.|+.|+.++......-.. .-.....+++
T Consensus 251 ~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~ 330 (409)
T 3hrp_A 251 EVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTV 330 (409)
T ss_dssp CEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEE
T ss_pred CEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEE
Confidence 64322 1111 1 2 3 899999 588888888889999999887532211100 0245789999
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCC-----
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGE----- 2285 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgH----- 2285 (2342)
+++|+++++-+. .++.|+.||+.+++.. ++. ++
T Consensus 331 d~dG~lyvad~~----------------------------------------~~~~I~~~~~~~G~v~-~~~-g~~~~~g 368 (409)
T 3hrp_A 331 DEDGNFYIVDGF----------------------------------------KGYCLRKLDILDGYVS-TVA-GQVDVAS 368 (409)
T ss_dssp CTTCCEEEEETT----------------------------------------TTCEEEEEETTTTEEE-EEE-ECTTCBS
T ss_pred eCCCCEEEEeCC----------------------------------------CCCEEEEEECCCCEEE-EEe-CCCCCCC
Confidence 999986554310 1467888997777643 333 22
Q ss_pred ----------CCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2286 ----------GQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2286 ----------s~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
-.....++++++|..+++-..++.|+.++.
T Consensus 369 ~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 369 QIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred cCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 135889999999887778788889988873
No 200
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.97 E-value=6.8e-08 Score=128.74 Aligned_cols=222 Identities=11% Similarity=0.022 Sum_probs=141.3
Q ss_pred ecCCCeEEecCCC-----ceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCc---------
Q 000085 1954 FQHGKASASPASG-----TFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGS--------- 2019 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD-----~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGs--------- 2019 (2342)
.++|+.++.++++ ..|++|+..++.... ....... +..++|+|||+.|+.++.++.
T Consensus 133 SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~-------~~~~~~~---~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 133 SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP-------DVLERVK---FSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE-------EEEEEEC---SCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc-------ccccCcc---cceEEEEeCCCEEEEEEECCcccccccccc
Confidence 3567776644332 389999976632111 1111111 234899999999998888766
Q ss_pred -------EEEEecCCcccc--e--ecccCCCCeEEEEecCCCCEEEEEeC-----CCceEEEeccCCccccccccCCCCC
Q 000085 2020 -------IKLLTSDGAKTL--E--TASGHCAPVTCLALSSDSNFLVTGSQ-----DTTILLWRIHRAFTSRTGTIEPSSG 2083 (2342)
Q Consensus 2020 -------IrVWDl~tgkll--~--tL~GHt~~VtcLAfSPDG~~LaSGS~-----DGTVrVWDl~tg~~i~t~~~~~~~~ 2083 (2342)
|++|++.+++.. . ....|...+..+.|+|||++|+.++. +..|.+||+.+....
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~---------- 272 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG---------- 272 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS----------
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc----------
Confidence 999999887632 2 22335667889999999999988765 567888888751000
Q ss_pred CccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCe--EEEE
Q 000085 2084 MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS----SDLLLHSIRRGR--LIRR 2157 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D----GtIrIWDLrTGk--lIrs 2157 (2342)
+ . + ......+..|...+.. .|+++|+.++..+.+ +.|.+||+.++. ..+.
T Consensus 273 ~-----~--~----------------~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 328 (710)
T 2xdw_A 273 I-----T--G----------------ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV 328 (710)
T ss_dssp S-----C--S----------------SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred c-----C--C----------------ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee
Confidence 0 0 0 0012234445555554 488898887766553 369999998874 2233
Q ss_pred EecC-C---cEEEEEecCCcEEEEEeCCCe--EEEEEe-CCceeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2158 LVGV-D---AHAVSLSSEGVIMTWNKLQHT--LSSFTL-NGVLVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2158 L~gh-~---vssLSfSpDG~IlVwdssdGs--I~I~dl-nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
+..+ . +..+++++++.+++....++. |.+|++ +|..+..... +.+.|..+.++|++..++..
T Consensus 329 l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~-~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 329 LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL-EVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC-CSSEEEEEECCTTCSEEEEE
T ss_pred ccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCC-CCceEEEEecCCCCCEEEEE
Confidence 4333 2 456788877887777777774 555666 4654444333 57788899999999877654
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.91 E-value=9.7e-08 Score=119.03 Aligned_cols=277 Identities=12% Similarity=0.096 Sum_probs=179.7
Q ss_pred EEcCCCCEEEEEEc-----CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe----------CCCceEEEec
Q 000085 2003 SITHDKEIITGGHV-----DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS----------QDTTILLWRI 2067 (2342)
Q Consensus 2003 afSpDGklLASGS~-----DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS----------~DGTVrVWDl 2067 (2342)
...|+++.+..... ++.|.++|..+++.+.++.....+ .++++|||++++.++ .+++|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34788887776655 689999999999999888765555 499999999887765 4688999999
Q ss_pred cCCccccccccCC------CCCCccccccCCCCCceeecC---CCccccccC--CceEEecCCCCCeEEEEEec-CCCEE
Q 000085 2068 HRAFTSRTGTIEP------SSGMGTPGNSIGSSTPANASA---DKSRRRRIE--GPIHVLRGHHREILCCCVSS-DLGVV 2135 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~------~~~V~svs~SpDG~~Las~s~---D~s~~~~i~--~~l~~L~GHs~~Vt~VafSP-Dg~lL 2135 (2342)
.+.....+..... ......+.++|||+.+.+... +.+..++.. +.+..+.... |..+.| ..+.+
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~~P~g~~~~ 192 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHIFPTAPDTF 192 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cceeecCCCcee
Confidence 9977665552221 235667889999998866643 223334332 2333332211 222234 45677
Q ss_pred EEEeCCCcEEEEECCC-CeEEEEEecC----C--c-EEEEEe-cCCcEEEEEeCCCeEEEEEeCCcee---eeec-----
Q 000085 2136 VSCSDSSDLLLHSIRR-GRLIRRLVGV----D--A-HAVSLS-SEGVIMTWNKLQHTLSSFTLNGVLV---ARAK----- 2198 (2342)
Q Consensus 2136 aSGS~DGtIrIWDLrT-GklIrsL~gh----~--v-ssLSfS-pDG~IlVwdssdGsI~I~dlnG~~L---~s~~----- 2198 (2342)
++.+.||.+.+.++.+ ++...+.... . . ....|. ++|+ ++|...+|.+++++..+... ....
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~-~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~ 271 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR-LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 271 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE-EEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc-EEEEeCCCEEEEEECCCCcceeecceeccccc
Confidence 7888899999999876 6653322111 0 0 113443 6775 44566688898888865321 1110
Q ss_pred ---CC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC
Q 000085 2199 ---LP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT 2274 (2342)
Q Consensus 2199 ---~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T 2274 (2342)
.+ ..+.+..++++++++.++....++.. +..+. ..+.|.+.|+.+
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~--------~~hk~-----------------------~~~~V~viD~~t 320 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDE--------WRHKT-----------------------ASRFVVVLDAKT 320 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCT--------TCTTS-----------------------CEEEEEEEETTT
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccc--------cccCC-----------------------CCCEEEEEECCC
Confidence 00 12344457788888888876421110 00000 135799999999
Q ss_pred CeEEEEEecCCCCCeEEEEEecCCC-EEEEE-eCCCcEEEEeCCCCC
Q 000085 2275 LKVFHVLKLGEGQDITALALNKDNT-NLLVS-TADKQLIVFTDPALS 2319 (2342)
Q Consensus 2275 gk~L~tL~lgHs~~ItsLafSPDG~-~LaSG-SsDGsIrVWDi~sLs 2319 (2342)
++.+..+..++ .+.+|++++|++ .|+++ ..++.|.|+|..+..
T Consensus 321 ~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 321 GERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp CCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 99999998554 688999999996 67665 458999999976653
No 202
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.88 E-value=1.5e-07 Score=113.85 Aligned_cols=226 Identities=9% Similarity=0.010 Sum_probs=156.3
Q ss_pred cCCcEEEEecCCcccceecc------cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccc
Q 000085 2016 VDGSIKLLTSDGAKTLETAS------GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGN 2089 (2342)
Q Consensus 2016 ~DGsIrVWDl~tgkll~tL~------GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~ 2089 (2342)
.+++|.+||..+++....+. ........+++. +++..++...+++|.+||..+++.+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~---------------- 77 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV---------------- 77 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE----------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE----------------
Confidence 47899999999988766542 122446778775 4556666667899999999885322
Q ss_pred cCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec-C------C
Q 000085 2090 SIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG-V------D 2162 (2342)
Q Consensus 2090 SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g-h------~ 2162 (2342)
..+. .......+++++++...++...++.|.+||..+++....+.. . .
T Consensus 78 ------------------------~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~ 132 (328)
T 3dsm_A 78 ------------------------GRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGS 132 (328)
T ss_dssp ------------------------EEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCB
T ss_pred ------------------------EEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCC
Confidence 1222 235678899999885555554899999999999998887763 2 3
Q ss_pred cEEEEEecCCcEEEEEe-CCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC
Q 000085 2163 AHAVSLSSEGVIMTWNK-LQHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK 2240 (2342)
Q Consensus 2163 vssLSfSpDG~IlVwds-sdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~ 2240 (2342)
...+++ .++.+++.+. .++.|.+++... ..+.... .......++++++|++++++..+.. .
T Consensus 133 p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~--~g~~p~~i~~~~dG~l~v~~~~~~~--~------------ 195 (328)
T 3dsm_A 133 TEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELT--IGIQPTSLVMDKYNKMWTITDGGYE--G------------ 195 (328)
T ss_dssp CCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEE--CSSCBCCCEECTTSEEEEEBCCBCT--T------------
T ss_pred cceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE--cCCCccceEEcCCCCEEEEECCCcc--C------------
Confidence 445666 5777777765 478999999874 3333332 2345678899999987665421100 0
Q ss_pred CCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2241 QSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2241 ~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
..+ ....+.|.++|..+++....+..........++|+||+++|+++.. .|.+||..+..
T Consensus 196 ----~~~-------------~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 196 ----SPY-------------GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp ----CSS-------------CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred ----Ccc-------------ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence 000 0014789999999999887776443457899999999999988765 89999976543
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.88 E-value=4.6e-07 Score=107.73 Aligned_cols=222 Identities=14% Similarity=0.064 Sum_probs=147.5
Q ss_pred EEEEcCCC-CEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2001 VVSITHDK-EIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2001 ~VafSpDG-klLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
...|++++ .++++...++.|+.||..+++. ..+ .+...+.+++++++|+++++. ++.|.+||..++.....
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~---- 88 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVL---- 88 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEE----
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEE----
Confidence 47888854 5777777889999999988765 222 245679999999999966553 56889999876432100
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEe-c-CCCCCeEEEEEecCCCEEEEEeCC---------CcEEEEE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL-R-GHHREILCCCVSSDLGVVVSCSDS---------SDLLLHS 2148 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L-~-GHs~~Vt~VafSPDg~lLaSGS~D---------GtIrIWD 2148 (2342)
... . .....+++++++++|++.++...+ ....+|.
T Consensus 89 ----------------------------------~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~ 134 (297)
T 3g4e_A 89 ----------------------------------ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYS 134 (297)
T ss_dssp ----------------------------------EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEE
T ss_pred ----------------------------------EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEE
Confidence 000 0 012347889999999977654321 2234444
Q ss_pred CC-CCeEEEEEec-CCcEEEEEecCCcEE-EEEeCCCeEEEEEeC---Cceee-ee--cC-CCCCCeEEEEEccCCCEEE
Q 000085 2149 IR-RGRLIRRLVG-VDAHAVSLSSEGVIM-TWNKLQHTLSSFTLN---GVLVA-RA--KL-PLSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2149 Lr-TGklIrsL~g-h~vssLSfSpDG~Il-VwdssdGsI~I~dln---G~~L~-s~--~~-~Hs~~ItsLafSPDGk~La 2218 (2342)
+. .++....... .....+++++||+.+ +.+..++.|..|+++ |.... .. .. .+...+..++++++|++.+
T Consensus 135 ~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwv 214 (297)
T 3g4e_A 135 LFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWV 214 (297)
T ss_dssp ECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEE
T ss_pred EECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEE
Confidence 43 2443332222 235789999999865 455667889999873 32211 11 11 1345678999999998776
Q ss_pred EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe-cC
Q 000085 2219 IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN-KD 2297 (2342)
Q Consensus 2219 SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS-PD 2297 (2342)
+.. ..+.|.+||..+++.+..+. .+...+++++|. ||
T Consensus 215 a~~-----------------------------------------~~~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d 252 (297)
T 3g4e_A 215 ACY-----------------------------------------NGGRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKN 252 (297)
T ss_dssp EEE-----------------------------------------TTTEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGG
T ss_pred EEc-----------------------------------------CCCEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCC
Confidence 553 14579999999999998888 555679999998 89
Q ss_pred CCEEEEEeC
Q 000085 2298 NTNLLVSTA 2306 (2342)
Q Consensus 2298 G~~LaSGSs 2306 (2342)
++.|++++.
T Consensus 253 ~~~L~vt~~ 261 (297)
T 3g4e_A 253 YSEMYVTCA 261 (297)
T ss_dssp GCEEEEEEB
T ss_pred CCEEEEEcC
Confidence 888776654
No 204
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.88 E-value=1.2e-07 Score=112.82 Aligned_cols=219 Identities=13% Similarity=0.089 Sum_probs=158.2
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
.+..+++++.++.+.+|+..++. ..|.++. +. ...+..++++|+|++++ +.++.|+.||. +|+.+..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~--~~w~~~~----~~--~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~ 72 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKE--IVWEYPL----EK--GWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIA 72 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTE--EEEEEEC----CT--TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCe--EEEEeCC----Cc--cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEc
Confidence 46778889999999999976643 3465432 11 11234588999999888 45788999999 888888887
Q ss_pred cCC-CCeEEEEecCCCCEEEEEeC-CCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2036 GHC-APVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2036 GHt-~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
.+. ..+.++.+.+||+++++.+. ++.|..+|. +++.+.+.. ....
T Consensus 73 ~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~-------------------------------~~~~- 119 (276)
T 3no2_A 73 APAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTE-------------------------------FETG- 119 (276)
T ss_dssp CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEE-------------------------------ECCS-
T ss_pred CCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEe-------------------------------ccCC-
Confidence 653 57889999999999999887 666766664 332222110 0000
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeC-C
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLN-G 2191 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dln-G 2191 (2342)
..++......+++.++|+++++.+.++.|.+||.. |+.+.++... ....+...++|.+++.+..++.+..++.. |
T Consensus 120 --~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 120 --IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp --CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred --CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 01122234455778999999999999999999997 9999998764 35677888999999988888889899887 7
Q ss_pred ceeeeecCC-----CCCCeEEEEEccCCCEEEEEe
Q 000085 2192 VLVARAKLP-----LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2192 ~~L~s~~~~-----Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+.+-+.... .-..+.+++..++|..+++..
T Consensus 197 ~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 197 RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred cEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 665544311 123478999999999998764
No 205
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.84 E-value=6.2e-08 Score=129.23 Aligned_cols=242 Identities=12% Similarity=0.102 Sum_probs=152.5
Q ss_pred ceeEEEEEcCCCCEEEEEE-----cCCcEEEEecCCccccee-cccCCCCeEEEEecCCCCEEEEEeCCCc---------
Q 000085 1997 RSSAVVSITHDKEIITGGH-----VDGSIKLLTSDGAKTLET-ASGHCAPVTCLALSSDSNFLVTGSQDTT--------- 2061 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS-----~DGsIrVWDl~tgkll~t-L~GHt~~VtcLAfSPDG~~LaSGS~DGT--------- 2061 (2342)
..+..++|||||++||.+. .+.+|++||+.+|+.+.. +.+. ....++|+ ||+.|+.++.|..
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 3455689999999888533 335799999999986543 2211 13578999 9999999988754
Q ss_pred ----eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC-CCCCeEEEEEecCCCEEE
Q 000085 2062 ----ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG-HHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2062 ----VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G-Hs~~Vt~VafSPDg~lLa 2136 (2342)
|.+|++.+..... ..+..... |...+..+.|+|||++++
T Consensus 206 ~~~~v~~~~lgt~~~~~------------------------------------~~v~~~~~~~~~~~~~~~~SpDg~~l~ 249 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDD------------------------------------RLVFGAIPAQHHRYVGATVTEDDRFLL 249 (693)
T ss_dssp CCCEEEEEETTSCGGGC------------------------------------EEEESCSGGGCCSEEEEEECTTSCEEE
T ss_pred CCcEEEEEECCCCcccc------------------------------------eEEEecCCCCCeEEEEEEEcCCCCEEE
Confidence 7777766532100 01112223 445577899999999875
Q ss_pred EEe----CCCcEEEEECCCCe-EEEEEecCC-cEEEEEecCCcEEEEEe-C---CCeEEEEEeCCcee--eeecCCCCCC
Q 000085 2137 SCS----DSSDLLLHSIRRGR-LIRRLVGVD-AHAVSLSSEGVIMTWNK-L---QHTLSSFTLNGVLV--ARAKLPLSGS 2204 (2342)
Q Consensus 2137 SGS----~DGtIrIWDLrTGk-lIrsL~gh~-vssLSfSpDG~IlVwds-s---dGsI~I~dlnG~~L--~s~~~~Hs~~ 2204 (2342)
... .++.|+++|+.++. ....+..+. .....++++|..+++-. . .+.|..+++.+... -+...+|...
T Consensus 250 ~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 329 (693)
T 3iuj_A 250 ISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ 329 (693)
T ss_dssp EEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred EEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC
Confidence 433 23589999998763 344444432 22222666665544443 2 25678888764322 0122345555
Q ss_pred eEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC
Q 000085 2205 IGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG 2284 (2342)
Q Consensus 2205 ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg 2284 (2342)
+. .|++++++|+....+.. ...|++||+..+. ...+...
T Consensus 330 ~~--~~s~~g~~lv~~~~~~g--------------------------------------~~~l~~~d~~g~~-~~~l~~p 368 (693)
T 3iuj_A 330 VL--TVHSGSGYLFAEYMVDA--------------------------------------TARVEQFDYEGKR-VREVALP 368 (693)
T ss_dssp CE--EEEEETTEEEEEEEETT--------------------------------------EEEEEEECTTSCE-EEEECCS
T ss_pred EE--EEEEECCEEEEEEEECC--------------------------------------eeEEEEEECCCCe-eEEeecC
Confidence 54 89999999887652211 1368899987544 4555544
Q ss_pred CCCCeEEEEEecCCCEEEEEeCC----CcEEEEeCCCC
Q 000085 2285 EGQDITALALNKDNTNLLVSTAD----KQLIVFTDPAL 2318 (2342)
Q Consensus 2285 Hs~~ItsLafSPDG~~LaSGSsD----GsIrVWDi~sL 2318 (2342)
+.+.+..+.+++++..|+....+ ++|+.||..+.
T Consensus 369 ~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 369 GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 55667888888888877765544 78999986544
No 206
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.84 E-value=4.5e-08 Score=122.25 Aligned_cols=173 Identities=8% Similarity=0.009 Sum_probs=130.6
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc---------cc-eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEec
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAK---------TL-ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgk---------ll-~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl 2067 (2342)
+++.+++++.+.++++|+.++ ++||++++.+ .. .....+.. |+.++| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 356699999999999999874 5669876543 11 12234666 999999 89999999 8899999999
Q ss_pred cCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2068 HRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIW 2147 (2342)
.+... ......|...+.++.+.+. .+++++.||.|.+|
T Consensus 114 ~sl~~----------------------------------------~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~ 151 (388)
T 1xip_A 114 EELSE----------------------------------------FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSAL 151 (388)
T ss_dssp SSTTC----------------------------------------EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEE
T ss_pred hhhhc----------------------------------------cCccceeecceeeEEecCC--CEEEEECCCCEEEE
Confidence 87421 1122345556777666543 38889999999999
Q ss_pred ECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCcee--e-eec--------CCCCCCeEEEEEccCCCE
Q 000085 2148 SIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLV--A-RAK--------LPLSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2148 DLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L--~-s~~--------~~Hs~~ItsLafSPDGk~ 2216 (2342)
|+.++.... + ...+.+++|||+| ++.+..+|.+++|+..+..+ . ... ..|...|.+|.|.+++.+
T Consensus 152 dl~~~~~~~-~-~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~f 227 (388)
T 1xip_A 152 DLRTKSTKQ-L-AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDF 227 (388)
T ss_dssp ETTTCCEEE-E-EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEE
T ss_pred EccCCcccc-c-cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeE
Confidence 999888754 2 3568999999999 56788899999999987764 2 221 136789999999999999
Q ss_pred EEEEe
Q 000085 2217 ALIGV 2221 (2342)
Q Consensus 2217 LaSGS 2221 (2342)
+++=+
T Consensus 228 lv~y~ 232 (388)
T 1xip_A 228 LAVFG 232 (388)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 98754
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.83 E-value=9.1e-07 Score=102.78 Aligned_cols=253 Identities=9% Similarity=-0.030 Sum_probs=164.3
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce-ec
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE-TA 2034 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~-tL 2034 (2342)
+|...++...++.+.+|+.. + ....+..+ .....+..++++++|++.++...++.|..||.. ++... .+
T Consensus 30 ~g~l~v~~~~~~~v~~~~~~-~-~~~~~~~~-------~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~ 99 (300)
T 2qc5_A 30 DGKVWFTQHKANKISSLDQS-G-RIKEFEVP-------TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPL 99 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-S-CEEEEECS-------STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred CCCEEEEcCCCCeEEEECCC-C-ceEEEECC-------CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecC
Confidence 34444555455677777644 1 11111111 122345668999999988877778899999987 55432 22
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCC-CccccccCCce
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASAD-KSRRRRIEGPI 2113 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D-~s~~~~i~~~l 2113 (2342)
..+...+.++++.++|++.++...++.|..||.. +.............+..+.+.++|+..++...+ .+..++.....
T Consensus 100 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~ 178 (300)
T 2qc5_A 100 PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKL 178 (300)
T ss_dssp SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCE
T ss_pred CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcE
Confidence 3344678999999999988888778899999987 433221122233456677788888855554432 33444433333
Q ss_pred EEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE-ec--CCcEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2114 HVL--RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL-VG--VDAHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2114 ~~L--~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL-~g--h~vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
..+ ..+...+.++++++++.+.++....+.|.+||. ++...... .. .....++++++|.+.+.+..++.|..|+
T Consensus 179 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 179 EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 332 234567899999999988777777788999998 66554432 21 2367899999999877776678899998
Q ss_pred eCCceeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2189 LNGVLVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
.++.............+.+++++++|+..++.
T Consensus 258 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 258 NDNTIQEYQLQTENAEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp TTSCEEEEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred CCCcEEEEECCccCCccceeEeCCCCCEEEEc
Confidence 87644322222245678999999999876644
No 208
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.80 E-value=6e-07 Score=107.02 Aligned_cols=226 Identities=8% Similarity=0.007 Sum_probs=148.7
Q ss_pred EEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2000 AVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2000 t~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
...+|+++|+ +++++..++.|..|+. +++ ...+..+...+.+++++++|+++++...++.|.+|+.. +... ..
T Consensus 48 egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~-~~-- 121 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH-LL-- 121 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE--
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE-EE--
Confidence 3478999998 7778888899999998 444 44555567789999999999977766666889999875 3210 00
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecC-CCCCeEEEEEecCCCEEEE----EeC-------------
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG-HHREILCCCVSSDLGVVVS----CSD------------- 2140 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G-Hs~~Vt~VafSPDg~lLaS----GS~------------- 2140 (2342)
+ ....+ ....+++++++++|.+.+| |..
T Consensus 122 ------------------~----------------~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~ 167 (305)
T 3dr2_A 122 ------------------V----------------GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA 167 (305)
T ss_dssp ------------------E----------------CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred ------------------E----------------eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence 0 00011 1234667888999988776 332
Q ss_pred CCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCC------CeEEEEEeCCceeeee--c-CCCCCCeEEEEEc
Q 000085 2141 SSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQ------HTLSSFTLNGVLVARA--K-LPLSGSIGCMEIS 2211 (2342)
Q Consensus 2141 DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssd------GsI~I~dlnG~~L~s~--~-~~Hs~~ItsLafS 2211 (2342)
.+.|+.+|..+++............+++++||+.+++.... +.|..|++.+..+... . ....+.+..++++
T Consensus 168 ~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d 247 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD 247 (305)
T ss_dssp CEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC
T ss_pred CCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC
Confidence 25688888877765443322345778999999866555443 6899998864322111 0 0123445567788
Q ss_pred cCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEE
Q 000085 2212 LDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITA 2291 (2342)
Q Consensus 2212 PDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~Its 2291 (2342)
++|++.++. .+.|.+||. .++.+..+.. +. .+.+
T Consensus 248 ~~G~lwv~~-------------------------------------------~~gv~~~~~-~g~~~~~~~~-~~-~~~~ 281 (305)
T 3dr2_A 248 RGGWLWSSS-------------------------------------------GTGVCVFDS-DGQLLGHIPT-PG-TASN 281 (305)
T ss_dssp TTSCEEECC-------------------------------------------SSEEEEECT-TSCEEEEEEC-SS-CCCE
T ss_pred CCCCEEEec-------------------------------------------CCcEEEECC-CCCEEEEEEC-CC-ceeE
Confidence 888754421 123888988 5777777763 33 5899
Q ss_pred EEEecCCCEEEEEeCCCcEE
Q 000085 2292 LALNKDNTNLLVSTADKQLI 2311 (2342)
Q Consensus 2292 LafSPDG~~LaSGSsDGsIr 2311 (2342)
++|+++++.|+.++.++..+
T Consensus 282 ~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 282 CTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EEECTTSCEEEEEETTEEEE
T ss_pred EEEeCCCCEEEEEcCCeEEE
Confidence 99999999998888764433
No 209
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.79 E-value=2e-07 Score=116.23 Aligned_cols=248 Identities=8% Similarity=-0.033 Sum_probs=157.9
Q ss_pred EEEcCCCCEEEEEE----------cCCcEEEEecCCcccceecccCC-------CCeEEEEecCCCCEEEEEeC--CCce
Q 000085 2002 VSITHDKEIITGGH----------VDGSIKLLTSDGAKTLETASGHC-------APVTCLALSSDSNFLVTGSQ--DTTI 2062 (2342)
Q Consensus 2002 VafSpDGklLASGS----------~DGsIrVWDl~tgkll~tL~GHt-------~~VtcLAfSPDG~~LaSGS~--DGTV 2062 (2342)
++++|||++++.+. .++.|.+||..+++.+.++.-.. ..-..++|+|||++++.+.. +++|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 89999999766554 36789999999998887764211 23457899999999988864 6899
Q ss_pred EEEeccCCccccccccCCC------CCCccccccCCCCCceeecCC-CccccccCCceEEecCCCCCeE-EEEEe-cCCC
Q 000085 2063 LLWRIHRAFTSRTGTIEPS------SGMGTPGNSIGSSTPANASAD-KSRRRRIEGPIHVLRGHHREIL-CCCVS-SDLG 2133 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~~~~~~------~~V~svs~SpDG~~Las~s~D-~s~~~~i~~~l~~L~GHs~~Vt-~VafS-PDg~ 2133 (2342)
.|+|+.+++...++....+ ..-..+..++||..+.+.... +... .... ..+..-...+. ...|. ++|+
T Consensus 163 sVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~~--~~~~~~~~~~~~~~~~~~~dG~ 239 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE-ITHT--EVFHPEDEFLINHPAYSQKAGR 239 (386)
T ss_dssp EEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCE-EEEC--CCCSCTTSCBCSCCEEETTTTE
T ss_pred EEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEE-Eeec--ceeccccccccccceeEcCCCc
Confidence 9999999876665522111 111123566777766655543 2211 1000 01111112222 23564 5675
Q ss_pred EEEEEeCCCcEEEEECCCCe--EEEEEe------------cCCcEEEEEecCCcEEEEEeC----------CCeEEEEEe
Q 000085 2134 VVVSCSDSSDLLLHSIRRGR--LIRRLV------------GVDAHAVSLSSEGVIMTWNKL----------QHTLSSFTL 2189 (2342)
Q Consensus 2134 lLaSGS~DGtIrIWDLrTGk--lIrsL~------------gh~vssLSfSpDG~IlVwdss----------dGsI~I~dl 2189 (2342)
+++ .+.+|.|++.|+.++. .+..+. ......+++++++..+..... .+.|.+++.
T Consensus 240 ~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~ 318 (386)
T 3sjl_D 240 LVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA 318 (386)
T ss_dssp EEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred EEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC
Confidence 544 5668999999997654 444343 123456788888876655432 246778887
Q ss_pred C-CceeeeecCCCCCCeEEEEEccCCC-EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2190 N-GVLVARAKLPLSGSIGCMEISLDGH-SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2190 n-G~~L~s~~~~Hs~~ItsLafSPDGk-~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
. ++.+.+...+ ..+++|++++||+ +|+++.. .++.|
T Consensus 319 ~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~----------------------------------------~~~~V 356 (386)
T 3sjl_D 319 KTGERLAKFEMG--HEIDSINVSQDEKPLLYALST----------------------------------------GDKTL 356 (386)
T ss_dssp TTCCEEEEEEEE--EEECEEEECSSSSCEEEEEET----------------------------------------TTTEE
T ss_pred CCCeEEEEEECC--CCcceEEECCCCCeEEEEEcC----------------------------------------CCCeE
Confidence 6 4444444333 4788999999997 6665531 16789
Q ss_pred EEEECCCCeEEEEEecCCCCCeEEEEEecC
Q 000085 2268 CFLDLHTLKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2268 rIWDL~Tgk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
.|+|..+++.+.++.. .+.-+.|.+++|
T Consensus 357 sViD~~t~k~~~~i~~--~~~p~~l~~s~d 384 (386)
T 3sjl_D 357 YIHDAESGEELRSVNQ--LGHGPQVITTAD 384 (386)
T ss_dssp EEEETTTCCEEEEECC--CCSSCCEEEECC
T ss_pred EEEECCCCcEEEEecC--CCCCceeEECCc
Confidence 9999999999999883 334456677766
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.79 E-value=1.6e-07 Score=118.64 Aligned_cols=288 Identities=10% Similarity=0.048 Sum_probs=182.5
Q ss_pred CCCCEEEEEEc-C----CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe----------CCCceEEEeccCC
Q 000085 2006 HDKEIITGGHV-D----GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS----------QDTTILLWRIHRA 2070 (2342)
Q Consensus 2006 pDGklLASGS~-D----GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS----------~DGTVrVWDl~tg 2070 (2342)
++++.++.... + +.|.++|..+++.+.++..-..+ .++++|||++|+.+. .+++|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 45564444433 2 69999999999999888755556 899999999888776 4789999999998
Q ss_pred ccccccccC------CCCCCccccccCCCCCceeecCC---Ccccccc--CCceEEecCCCCCeEEEEEecCC-CEEEEE
Q 000085 2071 FTSRTGTIE------PSSGMGTPGNSIGSSTPANASAD---KSRRRRI--EGPIHVLRGHHREILCCCVSSDL-GVVVSC 2138 (2342)
Q Consensus 2071 ~~i~t~~~~------~~~~V~svs~SpDG~~Las~s~D---~s~~~~i--~~~l~~L~GHs~~Vt~VafSPDg-~lLaSG 2138 (2342)
+...++... .......+.++|||+.+.+.... .+...+. .+.+..+..-. |....|++ ..+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEE
Confidence 766554222 12345678899999988776532 2222333 22233332211 12334443 556677
Q ss_pred eCCCcEEEEECCCCeEEEEEe----cC--C-cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeec---C------C--
Q 000085 2139 SDSSDLLLHSIRRGRLIRRLV----GV--D-AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAK---L------P-- 2200 (2342)
Q Consensus 2139 S~DGtIrIWDLrTGklIrsL~----gh--~-vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~---~------~-- 2200 (2342)
+.||.+.+.+..+++...... .. . ...+.++++|..+++....+.+.+++..+..+.... . .
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 788888888886666553321 10 0 123467888887777777788888887543221100 0 0
Q ss_pred -CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEE
Q 000085 2201 -LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFH 2279 (2342)
Q Consensus 2201 -Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~ 2279 (2342)
.......++++++|+.+++....+. . +.. ...++.|.++|..+++.+.
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~-~-------gth-----------------------k~~s~~VsVID~~T~kvv~ 364 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRD-E-------WKH-----------------------KAASRFVVVLNAETGERIN 364 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECC-T-------TCT-----------------------TSCEEEEEEEETTTCCEEE
T ss_pred cccCCceeeEEcCCCCEEEEEecccc-c-------ccc-----------------------cCCCCEEEEEECCCCeEEE
Confidence 0112223789999888776631110 0 000 0014679999999999999
Q ss_pred EEecCCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCChhhhhhhhhccccCC
Q 000085 2280 VLKLGEGQDITALALNKDNT-NLLVST-ADKQLIVFTDPALSLKVVDQMLKLGWEGD 2334 (2342)
Q Consensus 2280 tL~lgHs~~ItsLafSPDG~-~LaSGS-sDGsIrVWDi~sLs~k~LdQLLk~GWegD 2334 (2342)
++..+. ...+++|+|||+ .+++.. .++.|.|+|..+.. .+..+...|-.+.
T Consensus 365 ~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k--vv~tI~~vG~~P~ 417 (426)
T 3c75_H 365 KIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE--ELRSVDQLGRGPQ 417 (426)
T ss_dssp EEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETTTCC--EEEEECCCSSSCC
T ss_pred EEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC--EEEEecCCCCCCc
Confidence 998443 588999999999 888887 59999999977764 3333334444444
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.76 E-value=3.2e-06 Score=102.16 Aligned_cols=222 Identities=13% Similarity=0.094 Sum_probs=144.7
Q ss_pred EEEEcCCC-CEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2001 VVSITHDK-EIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2001 ~VafSpDG-klLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
..+|+|++ .+++++..++.|.+||..+++.. .+. +...|.+++|+++|+++++. .+ .|.+||..++......
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~--- 125 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA--- 125 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE---
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe---
Confidence 46789975 46777778899999999877543 222 34679999999999887764 44 4888888764311000
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCe
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD------SSDLLLHSIRRGR 2153 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~------DGtIrIWDLrTGk 2153 (2342)
. ... ......+++++++++|++.++... .+.|..+| +++
T Consensus 126 -------------------~---------~~~-----~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~ 170 (326)
T 2ghs_A 126 -------------------E---------LES-----DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK 170 (326)
T ss_dssp -------------------C---------SST-----TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE
T ss_pred -------------------e---------CCC-----CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc
Confidence 0 000 001235788999999997765542 24566666 565
Q ss_pred EEEEEec-CCcEEEEEecCCcEEEE-EeCCCeEEEEEeC---C-ce----eeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2154 LIRRLVG-VDAHAVSLSSEGVIMTW-NKLQHTLSSFTLN---G-VL----VARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2154 lIrsL~g-h~vssLSfSpDG~IlVw-dssdGsI~I~dln---G-~~----L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
....... .....+++++||+.+++ +..++.|.+|++. | .. ...........+.+++++++|.+.++..
T Consensus 171 ~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-- 248 (326)
T 2ghs_A 171 VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-- 248 (326)
T ss_dssp EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE--
T ss_pred EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe--
Confidence 4433222 23568899999986544 4556889999974 3 21 1111111345678899999998776542
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe-cCCCEEE
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN-KDNTNLL 2302 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS-PDG~~La 2302 (2342)
.++.|.+||. +++.+..+. .+...+++++|+ +++..|+
T Consensus 249 ---------------------------------------~~~~v~~~d~-~g~~~~~i~-~~~~~~~~~af~g~d~~~L~ 287 (326)
T 2ghs_A 249 ---------------------------------------GEGAVDRYDT-DGNHIARYE-VPGKQTTCPAFIGPDASRLL 287 (326)
T ss_dssp ---------------------------------------TTTEEEEECT-TCCEEEEEE-CSCSBEEEEEEESTTSCEEE
T ss_pred ---------------------------------------CCCEEEEECC-CCCEEEEEE-CCCCCcEEEEEecCCCCEEE
Confidence 1356889998 677777776 455679999998 8988776
Q ss_pred EEeCC
Q 000085 2303 VSTAD 2307 (2342)
Q Consensus 2303 SGSsD 2307 (2342)
+++..
T Consensus 288 vt~~~ 292 (326)
T 2ghs_A 288 VTSAR 292 (326)
T ss_dssp EEEBC
T ss_pred EEecC
Confidence 66543
No 212
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.75 E-value=5.5e-06 Score=102.82 Aligned_cols=233 Identities=8% Similarity=-0.080 Sum_probs=140.7
Q ss_pred EEEEcCCCCEEEEEE----------cCCcEEEEecCCcccceecccC-------CCCeEEEEecCCCCEEEEEeC--CCc
Q 000085 2001 VVSITHDKEIITGGH----------VDGSIKLLTSDGAKTLETASGH-------CAPVTCLALSSDSNFLVTGSQ--DTT 2061 (2342)
Q Consensus 2001 ~VafSpDGklLASGS----------~DGsIrVWDl~tgkll~tL~GH-------t~~VtcLAfSPDG~~LaSGS~--DGT 2061 (2342)
.++++|||++++.+. .++.|.+||..+++.+..+.-. ...-..++|+|||++|+.++. +++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 489999999887775 3688999999988877665321 123457899999999998874 578
Q ss_pred eEEEeccCCccccc-cccCCCCCCccccccCCCCCc-eeecCCCcc-cccc-CCceEEec-----CCCCC-eEEEEEecC
Q 000085 2062 ILLWRIHRAFTSRT-GTIEPSSGMGTPGNSIGSSTP-ANASADKSR-RRRI-EGPIHVLR-----GHHRE-ILCCCVSSD 2131 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t-~~~~~~~~V~svs~SpDG~~L-as~s~D~s~-~~~i-~~~l~~L~-----GHs~~-Vt~VafSPD 2131 (2342)
|.++| .+++.... .... . ++.+.+++... +....++.. .++. .+...... ....+ .....+.++
T Consensus 150 v~viD-~t~~~~~~~i~~~--~---~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP--T---CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC--c---eEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEec
Confidence 99999 88765544 3111 1 12223333221 111222211 1111 11110000 11112 123456666
Q ss_pred CCEEEEEeCCCcEEEEECCCCe--EEEEEe------------cCCcEEEEEecCCcEEEEEeC----------CCeEEEE
Q 000085 2132 LGVVVSCSDSSDLLLHSIRRGR--LIRRLV------------GVDAHAVSLSSEGVIMTWNKL----------QHTLSSF 2187 (2342)
Q Consensus 2132 g~lLaSGS~DGtIrIWDLrTGk--lIrsL~------------gh~vssLSfSpDG~IlVwdss----------dGsI~I~ 2187 (2342)
+..++..+.++.+.+.|+.++. .+..+. ......+++++||..+..... .+.|.++
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 6555545578899999997652 333332 112345788999875544322 3578888
Q ss_pred EeCCcee-eeecCCCCCCeEEEEEccCCC-EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCC
Q 000085 2188 TLNGVLV-ARAKLPLSGSIGCMEISLDGH-SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSP 2265 (2342)
Q Consensus 2188 dlnG~~L-~s~~~~Hs~~ItsLafSPDGk-~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DG 2265 (2342)
+.....+ .... ......+++|+|||+ .++++.. .++
T Consensus 304 D~~t~~vv~~i~--~g~~p~~i~~s~Dg~~~l~v~~~----------------------------------------~~~ 341 (373)
T 2mad_H 304 TGLVGQTSSQIS--LGHDVDAISVAQDGGPDLYALSA----------------------------------------GTE 341 (373)
T ss_pred ECCCCEEEEEEE--CCCCcCeEEECCCCCeEEEEEcC----------------------------------------CCC
Confidence 8875443 4443 334689999999999 6665420 157
Q ss_pred eEEEEECCCCeEEEEE
Q 000085 2266 SICFLDLHTLKVFHVL 2281 (2342)
Q Consensus 2266 sIrIWDL~Tgk~L~tL 2281 (2342)
.|.|+|+.+++.+.++
T Consensus 342 ~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 342 VLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEEEECCCCCEEeee
Confidence 8999999999998884
No 213
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.72 E-value=8e-07 Score=119.27 Aligned_cols=215 Identities=11% Similarity=0.091 Sum_probs=133.6
Q ss_pred cCCCeEEecCCC-----ceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCc----------
Q 000085 1955 QHGKASASPASG-----TFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGS---------- 2019 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD-----~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGs---------- 2019 (2342)
++|+.++.++++ ..|++|+..++.... . ... .. ....++|+|| +.|+.++.|+.
T Consensus 172 PDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~-----~--~~~--~~-~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~ 240 (741)
T 1yr2_A 172 DDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA-----D--ELK--WV-KFSGLAWLGN-DALLYSRFAEPKEGQAFQALN 240 (741)
T ss_dssp TTSSEEEEEEEETTCSEEEEEEEETTTCCEEE-----E--EEE--EE-ESCCCEESTT-SEEEEEECCCC--------CC
T ss_pred CCCCEEEEEEcCCCCceEEEEEEECCCCCCCC-----c--cCC--Cc-eeccEEEECC-CEEEEEEecCcccccccccCC
Confidence 566666654332 579999977643211 1 111 11 1134889999 98888776654
Q ss_pred ----EEEEecCCccc----ceecccCCCCeEEEEecCCCCEEEEEeCCC-----ceEEEeccCCccccccccCCCCCCcc
Q 000085 2020 ----IKLLTSDGAKT----LETASGHCAPVTCLALSSDSNFLVTGSQDT-----TILLWRIHRAFTSRTGTIEPSSGMGT 2086 (2342)
Q Consensus 2020 ----IrVWDl~tgkl----l~tL~GHt~~VtcLAfSPDG~~LaSGS~DG-----TVrVWDl~tg~~i~t~~~~~~~~V~s 2086 (2342)
|++|++.++.. +.....|...+..+.|||||++|+..+.++ .|.+||+.++..
T Consensus 241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-------------- 306 (741)
T 1yr2_A 241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-------------- 306 (741)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE--------------
T ss_pred CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC--------------
Confidence 88999987653 222233444689999999999998877554 788888876310
Q ss_pred ccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCC--eEEEEEec
Q 000085 2087 PGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS----SDLLLHSIRRG--RLIRRLVG 2160 (2342)
Q Consensus 2087 vs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D----GtIrIWDLrTG--klIrsL~g 2160 (2342)
.....+..+...+... ++++++.++..+.+ +.|.+||+.++ .....+..
T Consensus 307 ------------------------~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~ 361 (741)
T 1yr2_A 307 ------------------------GPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE 361 (741)
T ss_dssp ------------------------CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC
T ss_pred ------------------------cccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC
Confidence 0012233344444444 34888888877754 45999999885 33333333
Q ss_pred CC--cEEEEEecCCcEEEEEeCCCeEEEEEe--CCceeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2161 VD--AHAVSLSSEGVIMTWNKLQHTLSSFTL--NGVLVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2161 h~--vssLSfSpDG~IlVwdssdGsI~I~dl--nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
+. +..++++ ++.+++....++..++|.+ +|........++.+.|..+.++|++..++..
T Consensus 362 ~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~ 424 (741)
T 1yr2_A 362 SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS 424 (741)
T ss_dssp CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence 33 3345565 5666666677777666654 4665555444456788999999998766544
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.72 E-value=3.4e-07 Score=111.34 Aligned_cols=241 Identities=10% Similarity=0.075 Sum_probs=149.2
Q ss_pred eEEEEEcCCCCEEEEEE--cCCcEEEEecCCcccc------eecccCCCCeEEEEecCCCCEEEEEeC-----CCceEEE
Q 000085 1999 SAVVSITHDKEIITGGH--VDGSIKLLTSDGAKTL------ETASGHCAPVTCLALSSDSNFLVTGSQ-----DTTILLW 2065 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS--~DGsIrVWDl~tgkll------~tL~GHt~~VtcLAfSPDG~~LaSGS~-----DGTVrVW 2065 (2342)
...++++++|+++++.. .++.++||.+++++.. ....+|...+.+++++++|+++++-+. ++.|.+|
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~ 98 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAW 98 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEE
T ss_pred cceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEE
Confidence 45589999999988864 2343566665555432 112245678999999999887776544 5789999
Q ss_pred eccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEE-EEEe---CC
Q 000085 2066 RIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVV-VSCS---DS 2141 (2342)
Q Consensus 2066 Dl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS---~D 2141 (2342)
|+.++........ ... ...+...+..+++++++..+ ++.. .+
T Consensus 99 d~~tg~~~~~~~~-------------------------------~~~---~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 99 DTLNNQLSRVIYL-------------------------------PPP---ITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp ETTTTEEEEEEEC-------------------------------CTT---TSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred ECCCCeEEEEEEC-------------------------------Chh---hcccccccceEEEecCCCEEEEEcCccCCC
Confidence 9987643322100 000 01123456788888765444 5554 67
Q ss_pred CcEEEEECCCCeEEEEEecC-------------------------------CcEEEEEecCCcEEEEEeCCC-eEEEEEe
Q 000085 2142 SDLLLHSIRRGRLIRRLVGV-------------------------------DAHAVSLSSEGVIMTWNKLQH-TLSSFTL 2189 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrsL~gh-------------------------------~vssLSfSpDG~IlVwdssdG-sI~I~dl 2189 (2342)
+.|.+||+.+++..+.+.+| ....+++++||+.+++....+ .+..++.
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 88999999888776655331 135689999998666654443 5555443
Q ss_pred C---Cceee------e-ecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCC
Q 000085 2190 N---GVLVA------R-AKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2190 n---G~~L~------s-~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ 2259 (2342)
. ...+. . ...++......++++++|.++++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~-------------------------------------- 266 (343)
T 2qe8_A 225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDL-------------------------------------- 266 (343)
T ss_dssp HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEG--------------------------------------
T ss_pred HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEcc--------------------------------------
Confidence 1 00000 0 0011334566789999988777553
Q ss_pred ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2260 FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2260 ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
.++.|.+||..+++........+...+++++|.++++.+++.+..+.+.+|.
T Consensus 267 ---~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 267 ---AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ---GGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred ---CCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 1467999998667644333322345689999999998888777555554443
No 215
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.59 E-value=3e-07 Score=114.14 Aligned_cols=268 Identities=9% Similarity=0.019 Sum_probs=170.2
Q ss_pred cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe----------CCCceEEEeccCCccccccccC-C-----CC
Q 000085 2019 SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS----------QDTTILLWRIHRAFTSRTGTIE-P-----SS 2082 (2342)
Q Consensus 2019 sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS----------~DGTVrVWDl~tg~~i~t~~~~-~-----~~ 2082 (2342)
+|.++|..+++.+.++.....+ .++++||+++++.+. .+++|.+||..+++...++... . ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999988765566 799999999998886 4789999999998877665322 1 13
Q ss_pred CCccccccCCCCCceeecCC---Cccc--cccCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCC-----
Q 000085 2083 GMGTPGNSIGSSTPANASAD---KSRR--RRIEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRR----- 2151 (2342)
Q Consensus 2083 ~V~svs~SpDG~~Las~s~D---~s~~--~~i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrT----- 2151 (2342)
....+.++|||+.+.+.... .... ++... +..+..- + |+.+.|++ ..+++.+.||.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~-~---~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSA-S---CFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECS-S---CCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECC-C---ceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 46788999999999877542 2233 44433 3333211 1 12233443 3456677889988889876
Q ss_pred CeEEEE----Ee-cCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCce---eeeecCC---------CCCCeEEEEEccCC
Q 000085 2152 GRLIRR----LV-GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL---VARAKLP---------LSGSIGCMEISLDG 2214 (2342)
Q Consensus 2152 GklIrs----L~-gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~---L~s~~~~---------Hs~~ItsLafSPDG 2214 (2342)
++.+.+ +. +.... . ++++..++|... +.+.+.+..+.. +...... .......+++++||
T Consensus 200 ~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg 275 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT 275 (368)
T ss_dssp EECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred CeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC
Confidence 433211 11 11112 3 677776677666 888888875421 1111100 01112237899999
Q ss_pred CEEEEEeC-C-CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEE
Q 000085 2215 HSALIGVN-S-SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITAL 2292 (2342)
Q Consensus 2215 k~LaSGS~-D-Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsL 2292 (2342)
+.++.+.. . +.. . ..++.+.++|+.+++.+.++..+. ...++
T Consensus 276 ~~lyV~~~~~~~~~---------------------------------~-~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi 319 (368)
T 1mda_H 276 DGIMILTVEHSRSC---------------------------------L-AAAENTSSVTASVGQTSGPISNGH--DSDAI 319 (368)
T ss_dssp TEEEEEEEECSSCT---------------------------------T-SCEEEEEEEESSSCCEEECCEEEE--EECEE
T ss_pred CEEEEEeccccCcc---------------------------------c-ccCCCEEEEECCCCeEEEEEECCC--CcceE
Confidence 98887642 1 100 0 001235599999999999887443 68999
Q ss_pred EEecCCCE-EEEEe-CCCcEEEEeCCCCChhhhhhhhhccccCCCc
Q 000085 2293 ALNKDNTN-LLVST-ADKQLIVFTDPALSLKVVDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2293 afSPDG~~-LaSGS-sDGsIrVWDi~sLs~k~LdQLLk~GWegDGL 2336 (2342)
+|+|||++ +++.. .++.|.|+|..+++ +...+..|-.++|+
T Consensus 320 ~~s~Dg~~l~va~~~~~~~VsVID~~t~k---vv~~I~vg~~P~~i 362 (368)
T 1mda_H 320 IAAQDGASDNYANSAGTEVLDIYDAASDQ---DQSSVELDKGPESL 362 (368)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEESSSCE---EEEECCCCSCCCEE
T ss_pred EECCCCCEEEEEccCCCCeEEEEECCCCc---EEEEEECCCCCCEE
Confidence 99999984 55666 59999999977663 33334445555554
No 216
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.57 E-value=6.6e-06 Score=96.76 Aligned_cols=179 Identities=10% Similarity=0.095 Sum_probs=118.3
Q ss_pred eeEEEEEcCC-CCEEEEEEcCCcEEEEecCCccccee-ccc----CCCCeEEEEecCCCCEEEEEeCC------------
Q 000085 1998 SSAVVSITHD-KEIITGGHVDGSIKLLTSDGAKTLET-ASG----HCAPVTCLALSSDSNFLVTGSQD------------ 2059 (2342)
Q Consensus 1998 Svt~VafSpD-GklLASGS~DGsIrVWDl~tgkll~t-L~G----Ht~~VtcLAfSPDG~~LaSGS~D------------ 2059 (2342)
.+..++++++ |+++++.. ++.|.+||.+ ++.... ... +...+.+++++++|++.++.+.+
T Consensus 72 ~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~ 149 (314)
T 1pjx_A 72 IPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ 149 (314)
T ss_dssp CEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred CCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccccc
Confidence 3566899999 77666554 4579999988 665433 221 22458899999999888877655
Q ss_pred ---CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEe----cCC
Q 000085 2060 ---TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVS----SDL 2132 (2342)
Q Consensus 2060 ---GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafS----PDg 2132 (2342)
+.|..|+.. + ....+..+......++|+ +++
T Consensus 150 ~~~~~l~~~~~~-g-----------------------------------------~~~~~~~~~~~~~~i~~~~~~d~dg 187 (314)
T 1pjx_A 150 EKFGSIYCFTTD-G-----------------------------------------QMIQVDTAFQFPNGIAVRHMNDGRP 187 (314)
T ss_dssp SSCEEEEEECTT-S-----------------------------------------CEEEEEEEESSEEEEEEEECTTSCE
T ss_pred CCCCeEEEECCC-C-----------------------------------------CEEEeccCCCCcceEEEecccCCCC
Confidence 233333322 1 011111223446788999 998
Q ss_pred CEE-EEEeCCCcEEEEECC-CCeE-----EEEEecC---CcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCC
Q 000085 2133 GVV-VSCSDSSDLLLHSIR-RGRL-----IRRLVGV---DAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPL 2201 (2342)
Q Consensus 2133 ~lL-aSGS~DGtIrIWDLr-TGkl-----IrsL~gh---~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~H 2201 (2342)
+.+ ++...++.|.+||+. ++.. ...+..+ ....++++++|.+.+.+..++.|..|+.. +..+.... .+
T Consensus 188 ~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-~~ 266 (314)
T 1pjx_A 188 YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-CP 266 (314)
T ss_dssp EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-CS
T ss_pred CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-CC
Confidence 655 455678999999986 4542 2223222 25678999999988887778899999987 55444332 24
Q ss_pred CCCeEEEEEccCCCEEEEEe
Q 000085 2202 SGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2202 s~~ItsLafSPDGk~LaSGS 2221 (2342)
...+.+++++++|++|++++
T Consensus 267 ~~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 267 FEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp SSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeEEECCCCCEEEEEe
Confidence 57899999999999776664
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.55 E-value=5.4e-06 Score=103.99 Aligned_cols=223 Identities=10% Similarity=0.051 Sum_probs=147.0
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCC--cEEEEecCCcccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDG--SIKLLTSDGAKTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DG--sIrVWDl~tgkll~ 2032 (2342)
++|...++...+..|++|+..++. ... +. .. ..... ++|+++++.|+++..++ .|.+|+..++....
T Consensus 140 ~~g~lyv~d~~~~~I~~id~~~g~-~~~------~~--~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 140 GNNTVLAYQRDDPRVRLISVDDNK-VTT------VH--PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp STTEEEEEETTTTEEEEEETTTTE-EEE------EE--ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCCCEEEEecCCCcEEEEECCCCE-EEE------ee--cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 566766776677889999865421 111 11 11 12223 88999999888888766 78888887665433
Q ss_pred ec----ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc---ccCCCCCC-c-cccccCCCCCc-eeecCC
Q 000085 2033 TA----SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG---TIEPSSGM-G-TPGNSIGSSTP-ANASAD 2102 (2342)
Q Consensus 2033 tL----~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~---~~~~~~~V-~-svs~SpDG~~L-as~s~D 2102 (2342)
.+ ..+...+.+++++|++..|+.+..++.|..||..++...... ........ . .++++|++..+ ++...+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 33 224566889999995555666777899999999875422110 11111111 2 78889954444 443333
Q ss_pred C-ccccccCCceEEecCCC---------------CCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeEEEEEecC----
Q 000085 2103 K-SRRRRIEGPIHVLRGHH---------------REILCCCVSSDLGVVVSCS-DSSDLLLHSIRRGRLIRRLVGV---- 2161 (2342)
Q Consensus 2103 ~-s~~~~i~~~l~~L~GHs---------------~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTGklIrsL~gh---- 2161 (2342)
. +.+++.......+.++. .....++|+++|.+.++-+ .++.|+.||+.+|... ++.++
T Consensus 289 ~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~ 367 (409)
T 3hrp_A 289 SSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVA 367 (409)
T ss_dssp TEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCB
T ss_pred CEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCC
Confidence 2 34454444455554443 4578999999999888888 8999999998888643 33332
Q ss_pred -------------CcEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2162 -------------DAHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2162 -------------~vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
....++++++|.+++.+..++.|+.+.+
T Consensus 368 g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 368 SQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp SCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 2578999999999999988888887765
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.54 E-value=3.5e-06 Score=106.59 Aligned_cols=236 Identities=9% Similarity=-0.023 Sum_probs=151.3
Q ss_pred EEEEcCCCCEEEEEE----------cCCcEEEEecCCcccceecccC-------CCCeEEEEecCCCCEEEEEeC--CCc
Q 000085 2001 VVSITHDKEIITGGH----------VDGSIKLLTSDGAKTLETASGH-------CAPVTCLALSSDSNFLVTGSQ--DTT 2061 (2342)
Q Consensus 2001 ~VafSpDGklLASGS----------~DGsIrVWDl~tgkll~tL~GH-------t~~VtcLAfSPDG~~LaSGS~--DGT 2061 (2342)
-++++|||++++.+. .++.|.++|..+++.+.++.-. ...-..++|+|||++|+.+.. +++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 489999999776665 4779999999999888776421 123457899999999998874 578
Q ss_pred eEEEeccCCccccccccCCC------CCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCe-EEEEEecCCCE
Q 000085 2062 ILLWRIHRAFTSRTGTIEPS------SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREI-LCCCVSSDLGV 2134 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~~~~~~------~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~V-t~VafSPDg~l 2134 (2342)
|.+.|+.+.+...++..... .....+.++++|..+.+....+....... ..+.....++ ..+.|.+++..
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~---~~~~v~~~p~~~~~~~~~dg~~ 278 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT---EVFHTEDELLINHPAFSLRSGR 278 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC---CCCSCTTSCBCSCCEECTTTCE
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee---eeeccCCCceeeEeeecCCCCE
Confidence 99999999876655422111 11223445566665544442222111000 1111111121 23567888888
Q ss_pred EEEEeCCCcEEEEECCCCeEE--EEEe------------cCCcEEEEEecCCcE-EEEEeC---------CCeEEEEEeC
Q 000085 2135 VVSCSDSSDLLLHSIRRGRLI--RRLV------------GVDAHAVSLSSEGVI-MTWNKL---------QHTLSSFTLN 2190 (2342)
Q Consensus 2135 LaSGS~DGtIrIWDLrTGklI--rsL~------------gh~vssLSfSpDG~I-lVwdss---------dGsI~I~dln 2190 (2342)
++..+..|.|.+.|+..+... ..+. ......+++++||.. +++... .+.+.+++..
T Consensus 279 ~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~ 358 (426)
T 3c75_H 279 LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE 358 (426)
T ss_dssp EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence 777788899999998765422 2221 111234789999764 444321 2468888886
Q ss_pred C-ceeeeecCCCCCCeEEEEEccCCC-EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEE
Q 000085 2191 G-VLVARAKLPLSGSIGCMEISLDGH-SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSIC 2268 (2342)
Q Consensus 2191 G-~~L~s~~~~Hs~~ItsLafSPDGk-~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIr 2268 (2342)
. +.+.+... .....+++|+|||+ ++++... .++.|.
T Consensus 359 T~kvv~~I~v--g~~P~gia~spDg~~~lyv~n~----------------------------------------~s~~Vs 396 (426)
T 3c75_H 359 TGERINKIEL--GHEIDSINVSQDAEPLLYALSA----------------------------------------GTQTLH 396 (426)
T ss_dssp TCCEEEEEEE--EEEECEEEECCSSSCEEEEEET----------------------------------------TTTEEE
T ss_pred CCeEEEEEEC--CCCcCeEEEccCCCEEEEEEcC----------------------------------------CCCeEE
Confidence 4 44444332 23588999999999 7876631 167899
Q ss_pred EEECCCCeEEEEE
Q 000085 2269 FLDLHTLKVFHVL 2281 (2342)
Q Consensus 2269 IWDL~Tgk~L~tL 2281 (2342)
|+|+.+++.+.++
T Consensus 397 VID~~t~kvv~tI 409 (426)
T 3c75_H 397 IYDAATGEELRSV 409 (426)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEECCCCCEEEEe
Confidence 9999999999987
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.51 E-value=1.4e-05 Score=95.02 Aligned_cols=211 Identities=7% Similarity=-0.037 Sum_probs=135.9
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc-
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG- 2036 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G- 2036 (2342)
..+++...++.|..|+..++. ...+.. . ..+.+++++++|+++++. ++.|.+||.++++.......
T Consensus 26 ~l~~~d~~~~~i~~~d~~~~~-~~~~~~-------~---~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~ 92 (297)
T 3g4e_A 26 SLLFVDIPAKKVCRWDSFTKQ-VQRVTM-------D---APVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVD 92 (297)
T ss_dssp EEEEEETTTTEEEEEETTTCC-EEEEEC-------S---SCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECC
T ss_pred EEEEEECCCCEEEEEECCCCc-EEEEeC-------C---CceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecC
Confidence 344555556778888765421 111111 1 235679999999966654 67899999988764332221
Q ss_pred ---CCCCeEEEEecCCCCEEEEEeCC---------CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc
Q 000085 2037 ---HCAPVTCLALSSDSNFLVTGSQD---------TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS 2104 (2342)
Q Consensus 2037 ---Ht~~VtcLAfSPDG~~LaSGS~D---------GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s 2104 (2342)
....+.+++++|+|+++++...+ ....||.+... +
T Consensus 93 ~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~----------------------g----------- 139 (297)
T 3g4e_A 93 NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD----------------------H----------- 139 (297)
T ss_dssp TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT----------------------S-----------
T ss_pred CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC----------------------C-----------
Confidence 12357899999999977765332 22344444321 0
Q ss_pred cccccCCceEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEEC--CCCeEE--EEE---ec--CCcEEEEEecCCcE
Q 000085 2105 RRRRIEGPIHVLRGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSI--RRGRLI--RRL---VG--VDAHAVSLSSEGVI 2174 (2342)
Q Consensus 2105 ~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDL--rTGklI--rsL---~g--h~vssLSfSpDG~I 2174 (2342)
....+..+....+.++|+|+++.+ ++.+.++.|.+||+ .+|... +.+ .. .....++++++|.+
T Consensus 140 -------~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l 212 (297)
T 3g4e_A 140 -------HVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL 212 (297)
T ss_dssp -------CEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE
T ss_pred -------CEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE
Confidence 011112223346789999999866 55666889999997 566542 222 21 12567899999998
Q ss_pred EEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEc-cCCCEEEEEeC
Q 000085 2175 MTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEIS-LDGHSALIGVN 2222 (2342)
Q Consensus 2175 lVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafS-PDGk~LaSGS~ 2222 (2342)
.+.....+.|..|+.. |+.+..... +...+++++|. ||++.|++++.
T Consensus 213 wva~~~~~~v~~~d~~tG~~~~~i~~-p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 213 WVACYNGGRVIRLDPVTGKRLQTVKL-PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEETTTEEEEECTTTCCEEEEEEC-SSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEcCCCEEEEEcCCCceEEEEEEC-CCCCceEEEEeCCCCCEEEEEcC
Confidence 8888778889999987 766655443 45679999998 89888877763
No 220
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.47 E-value=4.4e-06 Score=111.55 Aligned_cols=152 Identities=9% Similarity=-0.014 Sum_probs=89.8
Q ss_pred CCCEEEEEEcCCcEEEEecCCcccceecccC-C----CCeEEEEecCCCCEEEEEeC------CCceEEEeccCCccccc
Q 000085 2007 DKEIITGGHVDGSIKLLTSDGAKTLETASGH-C----APVTCLALSSDSNFLVTGSQ------DTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~tgkll~tL~GH-t----~~VtcLAfSPDG~~LaSGS~------DGTVrVWDl~tg~~i~t 2075 (2342)
++..|+.++.|+.|..+|..+|+.+..+..+ . ..+++--.. .+..++.++. ++.|..+|..+++.+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 4567888889999999999999988776654 1 122211111 2345555543 79999999999876654
Q ss_pred cccCCC-------------------------------CCCccccccCCCCCceeecCCC--------------------c
Q 000085 2076 GTIEPS-------------------------------SGMGTPGNSIGSSTPANASADK--------------------S 2104 (2342)
Q Consensus 2076 ~~~~~~-------------------------------~~V~svs~SpDG~~Las~s~D~--------------------s 2104 (2342)
...... .....+++++++..+..+..+. +
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 421111 0112345556666665544332 1
Q ss_pred cccc--cCCceEEecC--CC-------CCeEEEEEecCC---CEEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2105 RRRR--IEGPIHVLRG--HH-------REILCCCVSSDL---GVVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2105 ~~~~--i~~~l~~L~G--Hs-------~~Vt~VafSPDg---~lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
..++ .++.+-.++. |. .....+....+| ..++.++.+|.++++|..+|+.+..+.
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 1111 1222222221 21 122333344467 688999999999999999999987765
No 221
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.44 E-value=2.8e-06 Score=106.20 Aligned_cols=182 Identities=10% Similarity=0.073 Sum_probs=124.5
Q ss_pred CeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCC
Q 000085 2040 PVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH 2119 (2342)
Q Consensus 2040 ~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH 2119 (2342)
.+..+++++...++++|+.|+ +++|++......... ..+. ..+.. ...+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~--------------~~~~---------------~~~~~-~~~l 87 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS--------------DSTP---------------LTFKW-EKEI 87 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS--------------SSCC---------------CCCSE-EEEC
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcc--------------cccc---------------ccceE-EeeC
Confidence 689999999999999999985 455998763210000 0000 01111 1235
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee
Q 000085 2120 HREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2120 s~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~ 2197 (2342)
.. |+.++| |+.+++++ .+|.|++||+++.........+. +..+.+.+. -++....+|.+.+|++.......
T Consensus 88 p~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~- 160 (388)
T 1xip_A 88 PD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ- 160 (388)
T ss_dssp TT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-
T ss_pred CC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-
Confidence 56 999999 89999988 88999999998765544444443 333333332 25555778999999987433322
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE
Q 000085 2198 KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV 2277 (2342)
Q Consensus 2198 ~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~ 2277 (2342)
+...|+|++|||+| ++.|.. ||++++|+...+++
T Consensus 161 ---~~~~Vs~v~WSpkG--~~vg~~-----------------------------------------dg~i~~~~~~~~~~ 194 (388)
T 1xip_A 161 ---LAQNVTSFDVTNSQ--LAVLLK-----------------------------------------DRSFQSFAWRNGEM 194 (388)
T ss_dssp ---EEESEEEEEECSSE--EEEEET-----------------------------------------TSCEEEEEEETTEE
T ss_pred ---ccCCceEEEEcCCc--eEEEEc-----------------------------------------CCcEEEEcCCCccc
Confidence 45689999999999 455542 67799998888775
Q ss_pred --EEEEec--------CCCCCeEEEEEecCCCEEEEEe
Q 000085 2278 --FHVLKL--------GEGQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2278 --L~tL~l--------gHs~~ItsLafSPDG~~LaSGS 2305 (2342)
..++.. +|...|.+|.|.+++.+|++-+
T Consensus 195 ~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 195 EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 556621 3778899999999999988743
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.41 E-value=1.1e-05 Score=107.66 Aligned_cols=216 Identities=12% Similarity=0.129 Sum_probs=135.3
Q ss_pred cCCCeEE-----ecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCc----------
Q 000085 1955 QHGKASA-----SPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGS---------- 2019 (2342)
Q Consensus 1955 ~~Gk~La-----SsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGs---------- 2019 (2342)
++|+.++ +++....|++|+..++.... .. .. .+. ...++|+ ||+.|+.++.+..
T Consensus 138 pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~-----~~--~~--~~k-~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~ 206 (693)
T 3iuj_A 138 RDGRILAYSLSLAGSDWREIHLMDVESKQPLE-----TP--LK--DVK-FSGISWL-GNEGFFYSSYDKPDGSELSARTD 206 (693)
T ss_dssp TTSSEEEEEEECSSCCEEEEEEEETTTCSEEE-----EE--EE--EEE-SCCCEEE-TTTEEEEEESSCCC-------CC
T ss_pred CCCCEEEEEEecCCCceEEEEEEECCCCCCCc-----cc--cC--Cce-eccEEEe-CCCEEEEEEecCcccccccccCC
Confidence 4566665 34444789999977643111 11 11 110 1247899 9998888887743
Q ss_pred ---EEEEecCCccc----ceeccc-CCCCeEEEEecCCCCEEEEEeC----CCceEEEeccCCccccccccCCCCCCccc
Q 000085 2020 ---IKLLTSDGAKT----LETASG-HCAPVTCLALSSDSNFLVTGSQ----DTTILLWRIHRAFTSRTGTIEPSSGMGTP 2087 (2342)
Q Consensus 2020 ---IrVWDl~tgkl----l~tL~G-Ht~~VtcLAfSPDG~~LaSGS~----DGTVrVWDl~tg~~i~t~~~~~~~~V~sv 2087 (2342)
|++|++.++.. +..... |...+..+.|+|||++|+..+. ++.|.+||+.++.
T Consensus 207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~---------------- 270 (693)
T 3iuj_A 207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN---------------- 270 (693)
T ss_dssp CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT----------------
T ss_pred CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC----------------
Confidence 99999987653 223333 5556789999999998855432 2478888876631
Q ss_pred cccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCC---CcEEEEECCCCeE--EEEEecC
Q 000085 2088 GNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDS---SDLLLHSIRRGRL--IRRLVGV 2161 (2342)
Q Consensus 2088 s~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~D---GtIrIWDLrTGkl--IrsL~gh 2161 (2342)
.....+..+....... |+++++.++ ++..| +.|..+|+.++.. .+.+..+
T Consensus 271 -----------------------~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 326 (693)
T 3iuj_A 271 -----------------------APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE 326 (693)
T ss_dssp -----------------------CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred -----------------------CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence 0122334455555554 566666554 44443 6799999988754 3345444
Q ss_pred CcEEEEEecCCcEEEEEeCC-C--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2162 DAHAVSLSSEGVIMTWNKLQ-H--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2162 ~vssLSfSpDG~IlVwdssd-G--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
....+.++++|..+++.... + .|.+|+++|........+..+.+..+.+++++..++...
T Consensus 327 ~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ 389 (693)
T 3iuj_A 327 RQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGF 389 (693)
T ss_dssp CSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEE
T ss_pred CCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEe
Confidence 32222999999887776543 3 678888887766665555666777888888887766553
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.39 E-value=3.3e-05 Score=93.35 Aligned_cols=209 Identities=11% Similarity=0.055 Sum_probs=131.8
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc---
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS--- 2035 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~--- 2035 (2342)
.+++...++.|..|+..++. ...+ .. . ..+.+++++++|+++++. ++.|.+||..+++......
T Consensus 63 l~~~d~~~~~i~~~d~~~~~-~~~~------~~-~---~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~~~~~~ 129 (326)
T 2ghs_A 63 AWWFNILERELHELHLASGR-KTVH------AL-P---FMGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAELES 129 (326)
T ss_dssp EEEEEGGGTEEEEEETTTTE-EEEE------EC-S---SCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECSST
T ss_pred EEEEECCCCEEEEEECCCCc-EEEE------EC-C---CcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEEeeCCC
Confidence 34444456677888755421 1111 11 1 235668999999977764 3459999998876533221
Q ss_pred cC-CCCeEEEEecCCCCEEEEEeCC----CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2036 GH-CAPVTCLALSSDSNFLVTGSQD----TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2036 GH-t~~VtcLAfSPDG~~LaSGS~D----GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
++ ...+.+++++|+|+++++...+ +...||.+.++.
T Consensus 130 ~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~--------------------------------------- 170 (326)
T 2ghs_A 130 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK--------------------------------------- 170 (326)
T ss_dssp TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE---------------------------------------
T ss_pred CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc---------------------------------------
Confidence 11 2458899999999977765432 234444443211
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEECC--CC-e-----EEEEEec--CCcEEEEEecCCcEEEEEe
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSDLLLHSIR--RG-R-----LIRRLVG--VDAHAVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGtIrIWDLr--TG-k-----lIrsL~g--h~vssLSfSpDG~IlVwds 2179 (2342)
...+..+......++|+++++.++ +.+.++.|.+||+. +| . .+..+.. .....++++++|.+.+...
T Consensus 171 --~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~ 248 (326)
T 2ghs_A 171 --VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW 248 (326)
T ss_dssp --EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred --EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe
Confidence 001111223467899999998764 44567899999986 66 3 2222221 1246788999999887776
Q ss_pred CCCeEEEEEeCCceeeeecCCCCCCeEEEEEc-cCCCEEEEEeC
Q 000085 2180 LQHTLSSFTLNGVLVARAKLPLSGSIGCMEIS-LDGHSALIGVN 2222 (2342)
Q Consensus 2180 sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafS-PDGk~LaSGS~ 2222 (2342)
..+.|..|+.++..+..... +...+++++|+ +++..|++++.
T Consensus 249 ~~~~v~~~d~~g~~~~~i~~-~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 249 GEGAVDRYDTDGNHIARYEV-PGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp TTTEEEEECTTCCEEEEEEC-SCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCEEEEECCCCCEEEEEEC-CCCCcEEEEEecCCCCEEEEEec
Confidence 67889999987766554433 45579999998 89888876653
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.38 E-value=1.2e-05 Score=97.77 Aligned_cols=215 Identities=7% Similarity=-0.069 Sum_probs=134.8
Q ss_pred CcceeEEEEEcCCCCEEEEEEc-----CCcEEEEecCCcccceeccc------CCCCeEEEEecCCC-CEEEEEe---CC
Q 000085 1995 GIRSSAVVSITHDKEIITGGHV-----DGSIKLLTSDGAKTLETASG------HCAPVTCLALSSDS-NFLVTGS---QD 2059 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~-----DGsIrVWDl~tgkll~tL~G------Ht~~VtcLAfSPDG-~~LaSGS---~D 2059 (2342)
+...+..++++++|+++++... ++.|.+||+.+++.+.++.. +...+..+++++++ ..+++.+ .+
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 4456777999999997776644 57899999999887665542 23456889999864 4456655 68
Q ss_pred CceEEEeccCCccccccccCCCCC-CccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2060 TTILLWRIHRAFTSRTGTIEPSSG-MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSC 2138 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~~~~~~~~-V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSG 2138 (2342)
+.|.+||+.++...+... .+... .....+.++|..+.+...++.. .. ....+..++|+|+++.++.+
T Consensus 145 ~~i~v~d~~~g~~~r~~~-~~~~~~~~~~~~~~~g~~~~~~~~~g~~--------~~---~~~~~~gia~s~dg~~ly~~ 212 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQ-GYPGIAPEDIDLVIDGVPVQIGQPDGTV--------IR---PHLGVNGIVLDAENEWLYLS 212 (343)
T ss_dssp CEEEEEETTTCCEEEECT-TCTTTSCCSCCCEETTEECBEECTTSCE--------EC---CCCCEEEEEECTTSCEEEEE
T ss_pred CeEEEEECCCCCEEEEec-CCCcccccccceeECCEEEEeccCCCce--------ec---eecccceeEeccCCCEEEEE
Confidence 899999998765433221 11000 0012233344333322222111 00 11346889999999988888
Q ss_pred eCCC-cEEEEECC---CCe--------EEEEEe-cCCcEEEEEecCCcEEEEEeCCCeEEEEEe-CCceeeeecCCCCCC
Q 000085 2139 SDSS-DLLLHSIR---RGR--------LIRRLV-GVDAHAVSLSSEGVIMTWNKLQHTLSSFTL-NGVLVARAKLPLSGS 2204 (2342)
Q Consensus 2139 S~DG-tIrIWDLr---TGk--------lIrsL~-gh~vssLSfSpDG~IlVwdssdGsI~I~dl-nG~~L~s~~~~Hs~~ 2204 (2342)
..++ .+..++.. .+. .+..+. ......++++++|.+++.+...+.|.+|+. +|........++...
T Consensus 213 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~ 292 (343)
T 2qe8_A 213 PMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSW 292 (343)
T ss_dssp ESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSC
T ss_pred eCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceec
Confidence 7766 45444432 111 011111 112456899999999999988999999998 675332222223456
Q ss_pred eEEEEEccCCCEEEEEe
Q 000085 2205 IGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2205 ItsLafSPDGk~LaSGS 2221 (2342)
+++++|.++|+++++.+
T Consensus 293 p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 293 TDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EEEEEECTTSCEEEEEC
T ss_pred CCeeEECCCCcEEEEeC
Confidence 89999999998888764
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.38 E-value=2.4e-05 Score=104.64 Aligned_cols=292 Identities=9% Similarity=-0.026 Sum_probs=152.9
Q ss_pred CCCEEEEEEcCCcEEEEecCCcccceeccc--CCCCeEEEEecC---CCCEEEEEe-----CCCceEEEeccCCcccccc
Q 000085 2007 DKEIITGGHVDGSIKLLTSDGAKTLETASG--HCAPVTCLALSS---DSNFLVTGS-----QDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~tgkll~tL~G--Ht~~VtcLAfSP---DG~~LaSGS-----~DGTVrVWDl~tg~~i~t~ 2076 (2342)
++..|+.++.|+.|+.+|..+|+.+-.+.. +......+..+| ++..++..+ .|+.|..||..+++.+...
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 355778888999999999999998765543 211111111222 454444332 3789999999998765544
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCc-------------
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSD------------- 2143 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGt------------- 2143 (2342)
......... .++..........+.+ ..|.. ..++......+++++++++++.++.++.
T Consensus 200 ~~~~~~p~~--~~~~~~~~~~~~~~~g-~~w~~------~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd 270 (689)
T 1yiq_A 200 YTVPGDPKL--PPEGKGMEIAAKTWFG-DAYVE------QGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGD 270 (689)
T ss_dssp ESSCCCTTS--CCCSHHHHHHHTTCCS-STHHH------HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSC
T ss_pred cccCCCccc--ccccccccccccccCC-ceeee------cCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCC
Confidence 211100000 0000000000000000 00100 0122222346788898899998888764
Q ss_pred ------EEEEECCCCeEEEEEec--CC---------cEEEEEecCCc---EEEEEeCCCeEEEEEeC-CceeeeecCCCC
Q 000085 2144 ------LLLHSIRRGRLIRRLVG--VD---------AHAVSLSSEGV---IMTWNKLQHTLSSFTLN-GVLVARAKLPLS 2202 (2342)
Q Consensus 2144 ------IrIWDLrTGklIrsL~g--h~---------vssLSfSpDG~---IlVwdssdGsI~I~dln-G~~L~s~~~~Hs 2202 (2342)
|..+|..+|+.+..+.. +. .....+..+|+ .++....+|.+++++.. |+.+........
T Consensus 271 ~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~ 350 (689)
T 1yiq_A 271 NLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQ 350 (689)
T ss_dssp CTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred ceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccc
Confidence 99999999999988764 21 11111122443 34444455555555543 333311111100
Q ss_pred --------------------------------------CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc
Q 000085 2203 --------------------------------------GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT 2244 (2342)
Q Consensus 2203 --------------------------------------~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ 2244 (2342)
..-..++|+|+...+++++.+.... ++......
T Consensus 351 ~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~------~~~~~~~~--- 421 (689)
T 1yiq_A 351 SWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAY------YEHIPEAP--- 421 (689)
T ss_dssp SSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEE------EECCSSCC---
T ss_pred ccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEecccccee------eeeccccc---
Confidence 0112378888888888776432210 01000000
Q ss_pred ccccc--ccccccC---CC--------C-ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 000085 2245 EDFDL--ASDQSVD---NN--------R-FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQL 2310 (2342)
Q Consensus 2245 iaFsp--d~~~s~s---s~--------~-ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsI 2310 (2342)
.+.. ....... .. + ....+|.|..||+.+++.+..+. . ..++..-.++..+..+++|+.||.|
T Consensus 422 -~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~-~~~~~~g~~~tagglvf~gt~dg~l 498 (689)
T 1yiq_A 422 -KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP-Y-VTIFNGGTLSTAGNLVFEGSADGRV 498 (689)
T ss_dssp -CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE-E-SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred -cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc-C-CCCccCccceECCCEEEEECCCCcE
Confidence 0000 0000000 00 0 00025889999999999998887 2 3344445667788899999999999
Q ss_pred EEEeCCCCC
Q 000085 2311 IVFTDPALS 2319 (2342)
Q Consensus 2311 rVWDi~sLs 2319 (2342)
++||..+.+
T Consensus 499 ~a~D~~tG~ 507 (689)
T 1yiq_A 499 IAYAADTGE 507 (689)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCc
Confidence 999976653
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.31 E-value=2.4e-05 Score=93.25 Aligned_cols=213 Identities=13% Similarity=0.154 Sum_probs=130.8
Q ss_pred eeecCCC-eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccc
Q 000085 1952 FLFQHGK-ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKT 2030 (2342)
Q Consensus 1952 flf~~Gk-~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkl 2030 (2342)
...++|. .+++...++.+..|+. ++. ... +.... ..+..++++++|+++++...++.|.+|+.+ ++.
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~------~~~~~---~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDV------LLDAT---AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA 118 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEET-TSC-EEE------EEESC---SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred eEeCCCCEEEEEECCCCEEEEEeC-CCC-EEE------EeCCC---CccceeeECCCCCEEEEECCCCEEEEECCC-CCE
Confidence 3345555 4556666677888864 211 111 11111 234568999999988877667889999986 543
Q ss_pred ceec---ccC-CCCeEEEEecCCCCEEEE----EeCC-------------CceEEEeccCCccccccccCCCCCCccccc
Q 000085 2031 LETA---SGH-CAPVTCLALSSDSNFLVT----GSQD-------------TTILLWRIHRAFTSRTGTIEPSSGMGTPGN 2089 (2342)
Q Consensus 2031 l~tL---~GH-t~~VtcLAfSPDG~~LaS----GS~D-------------GTVrVWDl~tg~~i~t~~~~~~~~V~svs~ 2089 (2342)
.... .+. ...+.+++++++|++.+| |..+ +.|..||..++
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g------------------- 179 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS------------------- 179 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-------------------
T ss_pred EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-------------------
Confidence 2211 111 234678999999988887 3211 12222222221
Q ss_pred cCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCeEE--EEEe--
Q 000085 2090 SIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS------SDLLLHSIRRGRLI--RRLV-- 2159 (2342)
Q Consensus 2090 SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D------GtIrIWDLrTGklI--rsL~-- 2159 (2342)
.+..+. +....+.++|+||++.++.+..+ +.|.+||+..+... +.+.
T Consensus 180 ----------------------~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 236 (305)
T 3dr2_A 180 ----------------------PLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV 236 (305)
T ss_dssp ----------------------CCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC
T ss_pred ----------------------cEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC
Confidence 011111 22356789999999977776655 78999998765421 1121
Q ss_pred -cCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2160 -GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2160 -gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
......++++++|++.+ ...+.|.+|+.+|+.+.....+ ..+.+++|+++++.|..++.
T Consensus 237 ~~~~pdgi~~d~~G~lwv--~~~~gv~~~~~~g~~~~~~~~~--~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 237 PDGLPDGFCVDRGGWLWS--SSGTGVCVFDSDGQLLGHIPTP--GTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp SSSCCCSEEECTTSCEEE--CCSSEEEEECTTSCEEEEEECS--SCCCEEEECTTSCEEEEEET
T ss_pred CCCCCCeEEECCCCCEEE--ecCCcEEEECCCCCEEEEEECC--CceeEEEEeCCCCEEEEEcC
Confidence 11234688999999544 3355699999988877665543 35899999999988887763
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.30 E-value=2.9e-05 Score=91.87 Aligned_cols=258 Identities=11% Similarity=0.026 Sum_probs=149.5
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
..+.+.++|.+++ |+.+ |..+|. +++.+..+..+........+. +..|+.++.++.+..+|.. +....... .
T Consensus 63 ~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~-~ 134 (330)
T 3hxj_A 63 CRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK-T 134 (330)
T ss_dssp ECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE-C
T ss_pred cceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc-C
Confidence 3466677776554 3333 888886 666655554433333334443 5567788889999999987 54433221 1
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccC-CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIE-GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~-~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL 2158 (2342)
....+..+...+++...+.....+...++.. .....+..+...+.++.+.+++.+.+ ++ +.|..+| .+++.+..+
T Consensus 135 ~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~ 210 (330)
T 3hxj_A 135 KKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNF 210 (330)
T ss_dssp SSCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEE
T ss_pred CCceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEE
Confidence 2223444455555654443332334333332 23334444455667777777777554 44 7888999 777777666
Q ss_pred ecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccc
Q 000085 2159 VGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQG 2236 (2342)
Q Consensus 2159 ~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~ 2236 (2342)
... .+..++..++|.+.+.. .++.+..++.++..+..... ....+.++.+.++|...+ |+
T Consensus 211 ~~~~~~~~~~~~~~~g~l~v~t-~~~gl~~~~~~g~~~~~~~~-~~~~~~~~~~~~~g~l~v-~t--------------- 272 (330)
T 3hxj_A 211 YAGYWTVTRPAISEDGTIYVTS-LDGHLYAINPDGTEKWRFKT-GKRIESSPVIGNTDTIYF-GS--------------- 272 (330)
T ss_dssp CCSSCCCSCCEECTTSCEEEEE-TTTEEEEECTTSCEEEEEEC-SSCCCSCCEECTTSCEEE-EC---------------
T ss_pred ccCCcceeceEECCCCeEEEEc-CCCeEEEECCCCCEeEEeeC-CCCccccceEcCCCeEEE-ec---------------
Confidence 543 25566777888765543 45667777665655433221 222233444544554433 32
Q ss_pred cCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2237 LNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2237 l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
.+|.|..+|. +++.+..+. .....+.++...++|. |..|+.+|.+++...+
T Consensus 273 --------------------------~~ggl~~~d~-~g~~~~~~~-~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 273 --------------------------YDGHLYAINP-DGTEKWNFE-TGSWIIATPVIDENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp --------------------------TTCEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred --------------------------CCCCEEEECC-CCcEEEEEE-cCCccccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence 2456888885 677777666 3345677788878886 6779999999998843
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.27 E-value=0.00019 Score=87.60 Aligned_cols=298 Identities=10% Similarity=0.094 Sum_probs=150.8
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceec---c--ccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAF---A--SSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL 2031 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~---h--s~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll 2031 (2342)
+..+..++.++.+..|+..++. ..|.+...... + ...+. .....++..++.++.++.|..+|..+|+.+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~--~~W~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~ 126 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGK--EIWSVSLAEKDGWFSKEPALLS----GGVTVSGGHVYIGSEKAQVYALNTSDGTVA 126 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCC--EEEEEECCC---CCSCCCCCEE----EEEEEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCeEEEEEccCCc--eeeeecCccccccccccCcccc----cCceEeCCEEEEEcCCCEEEEEECCCCCEE
Confidence 3444455556677888876643 34433211000 0 11111 112224556777888999999999999887
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCC----CccccccCCCCCceeecCCC-ccc
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSG----MGTPGNSIGSSTPANASADK-SRR 2106 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~----V~svs~SpDG~~Las~s~D~-s~~ 2106 (2342)
.....+.......... +..++.++.++.|..+|..+++............ ....... +..+..+..++ ...
T Consensus 127 W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 127 WQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp EEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred EEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 6655443222222222 4578888999999999998886554432111100 0111111 22222222221 111
Q ss_pred ccc--CCceEEecCCC--C-----C---e-EEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCc
Q 000085 2107 RRI--EGPIHVLRGHH--R-----E---I-LCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGV 2173 (2342)
Q Consensus 2107 ~~i--~~~l~~L~GHs--~-----~---V-t~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~ 2173 (2342)
++. ++.+-...... . . + ....+ .+..++.++.+|.+..+|..+|+.+..........+... ++
T Consensus 203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~-~~- 278 (376)
T 3q7m_A 203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVD-GN- 278 (376)
T ss_dssp EETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEEE-TT-
T ss_pred EECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceEE-CC-
Confidence 211 11111111100 0 0 0 00011 246677788889999999999988876654332222221 22
Q ss_pred EEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccc
Q 000085 2174 IMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASD 2252 (2342)
Q Consensus 2174 IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~ 2252 (2342)
.++....++.+..++.. |+.+-.........+....+. +..+++++
T Consensus 279 ~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~------------------------------- 325 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGD------------------------------- 325 (376)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEEC-------------------------------
T ss_pred EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEe-------------------------------
Confidence 23333345556666653 322221110111112222221 33444442
Q ss_pred cccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEE-EEEecCCCEEEEEeCCCcEEEEe
Q 000085 2253 QSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITA-LALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2253 ~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~Its-LafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
.+|.|+++|..+++.+...... ...+.+ ... .+..|++++.||.|+.|+
T Consensus 326 ----------~~g~l~~~d~~tG~~~~~~~~~-~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 326 ----------SEGYLHWINVEDGRFVAQQKVD-SSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ----------TTSEEEEEETTTCCEEEEEECC-TTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred ----------CCCeEEEEECCCCcEEEEEecC-CCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 2678999999999998887732 223322 222 245788999999999987
No 229
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.27 E-value=7.8e-05 Score=94.23 Aligned_cols=225 Identities=15% Similarity=0.131 Sum_probs=144.7
Q ss_pred EEc--CCCCE-EEEEEcCCcEEEEecCCc----ccceecc------cC-CCCeEEEEecCCCCEEEEEeCC------Cce
Q 000085 2003 SIT--HDKEI-ITGGHVDGSIKLLTSDGA----KTLETAS------GH-CAPVTCLALSSDSNFLVTGSQD------TTI 2062 (2342)
Q Consensus 2003 afS--pDGkl-LASGS~DGsIrVWDl~tg----kll~tL~------GH-t~~VtcLAfSPDG~~LaSGS~D------GTV 2062 (2342)
.++ .++++ ++.|..++.|.|+|+.+. +...++. .+ ...-..+..+|+| .++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 445 77774 555668899999998754 4455552 01 1123456778999 77776665 788
Q ss_pred EEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe---
Q 000085 2063 LLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS--- 2139 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS--- 2139 (2342)
.+.|..+.+.+.+.. .. .+-..--..+-|+|+++.+++..
T Consensus 167 ~vlD~~T~~v~~~~~-------------------------------~~------~~~~~~~Yd~~~~p~~~~mvsS~wg~ 209 (462)
T 2ece_A 167 LMLDHYSFEPLGKWE-------------------------------ID------RGDQYLAYDFWWNLPNEVLVSSEWAV 209 (462)
T ss_dssp EEECTTTCCEEEECC-------------------------------SB------CTTCCCCCCEEEETTTTEEEECBCCC
T ss_pred EEEECCCCeEEEEEc-------------------------------cC------CCCccccceEEECCCCCEEEEccCcC
Confidence 888888754333220 00 00011122466788888888774
Q ss_pred ----------------CCCcEEEEECCCCeEEEEEecC----CcEEEEE--ecCCcEEEEEe------CCCeEEEEEeCC
Q 000085 2140 ----------------DSSDLLLHSIRRGRLIRRLVGV----DAHAVSL--SSEGVIMTWNK------LQHTLSSFTLNG 2191 (2342)
Q Consensus 2140 ----------------~DGtIrIWDLrTGklIrsL~gh----~vssLSf--SpDG~IlVwds------sdGsI~I~dlnG 2191 (2342)
.+.+|.+||+.+++.++++... ....+.| +|+|++..... .+++|.+|..++
T Consensus 210 p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 210 PNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp HHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred ccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 3689999999999999988763 1344445 99998765554 455676655432
Q ss_pred ceeeeec---CC---C--------------CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccccc
Q 000085 2192 VLVARAK---LP---L--------------SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLAS 2251 (2342)
Q Consensus 2192 ~~L~s~~---~~---H--------------s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~ 2251 (2342)
....... .+ . ......+.+|+||++|.++..
T Consensus 290 g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr----------------------------- 340 (462)
T 2ece_A 290 GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW----------------------------- 340 (462)
T ss_dssp TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET-----------------------------
T ss_pred CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC-----------------------------
Confidence 1111000 00 0 245788999999999998742
Q ss_pred ccccCCCCccCCCCeEEEEECC---CCeEEEEEecCCC-------------CCeEEEEEecCCCEEEEEe
Q 000085 2252 DQSVDNNRFDFPSPSICFLDLH---TLKVFHVLKLGEG-------------QDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2252 ~~s~ss~~ias~DGsIrIWDL~---Tgk~L~tL~lgHs-------------~~ItsLafSPDG~~LaSGS 2305 (2342)
..+.|.++|+. +.+.+..+..+-. +.-..++++|||++|+++.
T Consensus 341 -----------g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 341 -----------GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp -----------TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred -----------CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 14679999985 3567777764411 1358899999999999988
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.27 E-value=2.2e-05 Score=97.49 Aligned_cols=242 Identities=10% Similarity=-0.024 Sum_probs=145.7
Q ss_pred EEEEcCCCCEEEEEE----------cCCcEEEEecCCcccceecccC-------CCCeEEEEecCCCCEEEEEeC--CCc
Q 000085 2001 VVSITHDKEIITGGH----------VDGSIKLLTSDGAKTLETASGH-------CAPVTCLALSSDSNFLVTGSQ--DTT 2061 (2342)
Q Consensus 2001 ~VafSpDGklLASGS----------~DGsIrVWDl~tgkll~tL~GH-------t~~VtcLAfSPDG~~LaSGS~--DGT 2061 (2342)
.+.++|||+.++.+. .+++|.+||..+++.+.++..+ ......++++|||++++.+.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 489999999777765 3789999999999998887543 123567899999999998875 467
Q ss_pred eEE--EeccCCccccccccCCC------CCCccccccCCCCCceeecCC-----CccccccCCceEEecCCCCCeEEEEE
Q 000085 2062 ILL--WRIHRAFTSRTGTIEPS------SGMGTPGNSIGSSTPANASAD-----KSRRRRIEGPIHVLRGHHREILCCCV 2128 (2342)
Q Consensus 2062 VrV--WDl~tg~~i~t~~~~~~------~~V~svs~SpDG~~Las~s~D-----~s~~~~i~~~l~~L~GHs~~Vt~Vaf 2128 (2342)
|.+ +|..+ ........+ .....+..++++..+...... +...+... . .+.-...+. .
T Consensus 149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~--~i~vg~~P~---~- 218 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-G--AQNCSSQAA---Q- 218 (368)
T ss_dssp EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-T--TSCBCSCCE---E-
T ss_pred EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-e--eeeCCCCcc---c-
Confidence 888 99877 222211100 111123344444444333221 11111000 0 011112233 3
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCC--eEEEEEec------------CCcEEEEEecCCcEEEEEeC---------CCeEE
Q 000085 2129 SSDLGVVVSCSDSSDLLLHSIRRG--RLIRRLVG------------VDAHAVSLSSEGVIMTWNKL---------QHTLS 2185 (2342)
Q Consensus 2129 SPDg~lLaSGS~DGtIrIWDLrTG--klIrsL~g------------h~vssLSfSpDG~IlVwdss---------dGsI~ 2185 (2342)
++++..++..+. +.|.+.|+.++ +.+..+.. .....+++++||+.++.... .+.+.
T Consensus 219 ~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 219 ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence 666666666666 99999998654 23333321 11223789999886655432 23566
Q ss_pred EEEeCCc-eeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCC
Q 000085 2186 SFTLNGV-LVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPS 2264 (2342)
Q Consensus 2186 I~dlnG~-~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~D 2264 (2342)
+++.... .+..... .....+++|++||++++.+.. ..+
T Consensus 298 ViD~~t~~vv~~i~v--g~~p~gi~~s~Dg~~l~va~~---------------------------------------~~~ 336 (368)
T 1mda_H 298 SVTASVGQTSGPISN--GHDSDAIIAAQDGASDNYANS---------------------------------------AGT 336 (368)
T ss_dssp EEESSSCCEEECCEE--EEEECEEEECCSSSCEEEEEE---------------------------------------TTT
T ss_pred EEECCCCeEEEEEEC--CCCcceEEECCCCCEEEEEcc---------------------------------------CCC
Confidence 8888643 3433322 236889999999986554431 015
Q ss_pred CeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2265 PSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2265 GsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
+.|.|+|+.+++.+.++..+ .....+++.+
T Consensus 337 ~~VsVID~~t~kvv~~I~vg--~~P~~i~~~~ 366 (368)
T 1mda_H 337 EVLDIYDAASDQDQSSVELD--KGPESLSVQN 366 (368)
T ss_dssp TEEEEEESSSCEEEEECCCC--SCCCEEECCC
T ss_pred CeEEEEECCCCcEEEEEECC--CCCCEEEeec
Confidence 78999999999999998833 3345565544
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.17 E-value=0.00014 Score=97.10 Aligned_cols=301 Identities=9% Similarity=-0.002 Sum_probs=163.4
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCCCC----------e-EEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHCAP----------V-TCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt~~----------V-tcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
+..|+.++.++.|+.+|..+|+.+-.+...... + ..+++ ++..|+.++.|+.|..+|..+++.+...
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 445666677899999999999887655432210 1 12233 4678889999999999999998766554
Q ss_pred ccC-CCCCCccccccC--CCCCceeec----------------CCCccccccCCceEE----------------ec----
Q 000085 2077 TIE-PSSGMGTPGNSI--GSSTPANAS----------------ADKSRRRRIEGPIHV----------------LR---- 2117 (2342)
Q Consensus 2077 ~~~-~~~~V~svs~Sp--DG~~Las~s----------------~D~s~~~~i~~~l~~----------------L~---- 2117 (2342)
... .......+..+| .+..+.++. .++..+|.....-.. ..
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~ 234 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence 222 100000111111 122222221 122222322110000 00
Q ss_pred -----CCCCCeEEEEEecCCCEEEEEeCCC-------------------cEEEEECCCCeEEEEEec--CC---------
Q 000085 2118 -----GHHREILCCCVSSDLGVVVSCSDSS-------------------DLLLHSIRRGRLIRRLVG--VD--------- 2162 (2342)
Q Consensus 2118 -----GHs~~Vt~VafSPDg~lLaSGS~DG-------------------tIrIWDLrTGklIrsL~g--h~--------- 2162 (2342)
++......+++++++.+++.++.++ +|..+|..+|+.+..+.. +.
T Consensus 235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 314 (677)
T 1kb0_A 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (677)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCC
Confidence 1111223578889999999887764 599999999999888764 21
Q ss_pred cEEEEEecCC---cEEEEEeCCCeEEEEEeC-CceeeeecCCCCC----------------------------------C
Q 000085 2163 AHAVSLSSEG---VIMTWNKLQHTLSSFTLN-GVLVARAKLPLSG----------------------------------S 2204 (2342)
Q Consensus 2163 vssLSfSpDG---~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~----------------------------------~ 2204 (2342)
...+....+| ..++....+|.+++++.. |+.+......... .
T Consensus 315 p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~ 394 (677)
T 1kb0_A 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN 394 (677)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC
T ss_pred cEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC
Confidence 2233333456 455555566666666653 4433322211000 0
Q ss_pred eEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCC--cccccccc--cccc----CCCCccCCCCeEEEEECCCCe
Q 000085 2205 IGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSG--TEDFDLAS--DQSV----DNNRFDFPSPSICFLDLHTLK 2276 (2342)
Q Consensus 2205 ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~--~iaFspd~--~~s~----ss~~ias~DGsIrIWDL~Tgk 2276 (2342)
-..++++|++.+++++..+...+ ++.......+ ...+.... .... ......-..|.|..||+.+++
T Consensus 395 w~~~a~dp~~~~~yv~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 395 WHPMSFNPQTGLVYLPAQNVPVN------LMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp SSCCEEETTTTEEEEEEEECCCE------EEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred CCCceEcCCCCEEEEeChhccee------eecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 12578899888888775332100 0000000000 00000000 0000 000001134899999999999
Q ss_pred EEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2277 VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2277 ~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.+..+. +..++.+..++.++..+++++.||.+++||..+.
T Consensus 469 ~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 469 AAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp EEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred EEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence 998887 4445666667788889999999999999997655
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.16 E-value=7.3e-05 Score=100.03 Aligned_cols=41 Identities=7% Similarity=0.028 Sum_probs=32.3
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEE
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaS 2303 (2342)
.||.++.||..+|+.+..+..++.....-+.|..+|+..++
T Consensus 494 ~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 494 ADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 48999999999999999998665544455778889875554
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.07 E-value=1.8e-06 Score=106.64 Aligned_cols=146 Identities=8% Similarity=0.031 Sum_probs=74.9
Q ss_pred CCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCc-
Q 000085 2007 DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMG- 2085 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~- 2085 (2342)
++..+++|+.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.|++|..||..+++............+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 567888999999999999999999887776 56666666778888888899999999999887654332111000000
Q ss_pred cccccCCCCCceeecCCC-cccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2086 TPGNSIGSSTPANASADK-SRRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2086 svs~SpDG~~Las~s~D~-s~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
..... ++..++++..++ ...++. ++.+..+..+. ...++|++..+++++.|+.|+.||.++|+.+..+.
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 11111 223333333222 222322 22333333332 23456788899999999999999999998765553
No 234
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.96 E-value=0.00099 Score=79.87 Aligned_cols=242 Identities=10% Similarity=0.069 Sum_probs=145.0
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc--------------------cCCCCeEEEEecC-CCCEEEEEeCC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS--------------------GHCAPVTCLALSS-DSNFLVTGSQD 2059 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~--------------------GHt~~VtcLAfSP-DG~~LaSGS~D 2059 (2342)
.++++++|+++.++..++.|..|+..+++... +. .....+.++++.+ +++ |+.+...
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~ 100 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCY 100 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETT
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECC
Confidence 47889999977788889999999987654321 11 0113578999997 555 4445444
Q ss_pred CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC-CCCCeEEEEEec-CCCEEEE
Q 000085 2060 TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG-HHREILCCCVSS-DLGVVVS 2137 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G-Hs~~Vt~VafSP-Dg~lLaS 2137 (2342)
+.|..+|..++.. ..+ +. ...+ .......+++.+ +|.+.++
T Consensus 101 ~~i~~~d~~~g~~-~~~--------------------~~----------------~~~~~~~~~p~~i~~d~~~G~l~v~ 143 (322)
T 2fp8_A 101 YHLSVVGSEGGHA-TQL--------------------AT----------------SVDGVPFKWLYAVTVDQRTGIVYFT 143 (322)
T ss_dssp TEEEEECTTCEEC-EEE--------------------ES----------------EETTEECSCEEEEEECTTTCCEEEE
T ss_pred CCEEEEeCCCCEE-EEe--------------------cc----------------cCCCCcccccceEEEecCCCEEEEE
Confidence 5577777654311 000 00 0000 112456788888 8877665
Q ss_pred EeC-----------------CCcEEEEECCCCeEEEEEec-CCcEEEEEecCCc-EEEEEeCCCeEEEEEeCCce---ee
Q 000085 2138 CSD-----------------SSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVL---VA 2195 (2342)
Q Consensus 2138 GS~-----------------DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~---L~ 2195 (2342)
-.. +|.|..+|..+++....... .....++++++|. +++.+...+.|..|++.+.. ..
T Consensus 144 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~ 223 (322)
T 2fp8_A 144 DVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE 223 (322)
T ss_dssp ESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE
T ss_pred CCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc
Confidence 432 37799999887765433222 3356789999997 55666777899999987521 11
Q ss_pred eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2196 RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2196 s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
... ...+ ...++++++|++.++....... . +. ....+.|..+|. .+
T Consensus 224 ~~~-~~~g-P~gi~~d~~G~l~va~~~~~~~--------~-------------~~----------~~~~~~v~~~d~-~G 269 (322)
T 2fp8_A 224 VLV-KIPN-PGNIKRNADGHFWVSSSEELDG--------N-------------MH----------GRVDPKGIKFDE-FG 269 (322)
T ss_dssp EEE-ECSS-EEEEEECTTSCEEEEEEEETTS--------S-------------TT----------SCEEEEEEEECT-TS
T ss_pred eEE-eCCC-CCCeEECCCCCEEEEecCcccc--------c-------------cc----------CCCccEEEEECC-CC
Confidence 110 1223 7889999999877655311110 0 00 001345777776 46
Q ss_pred eEEEEEecCC---CCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2276 KVFHVLKLGE---GQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2276 k~L~tL~lgH---s~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+.+..+.... -..++++++ .+++.+++....+.|.+++.+
T Consensus 270 ~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 270 NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred CEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 6666665322 234677776 466555555678899999854
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.96 E-value=8e-05 Score=96.92 Aligned_cols=265 Identities=11% Similarity=0.036 Sum_probs=167.2
Q ss_pred CCCCEEEEEEc-CCcEEEEecCCcccceeccc-CCCCeEEEEe-c-CCCCEEEEEe------------------CCCceE
Q 000085 2006 HDKEIITGGHV-DGSIKLLTSDGAKTLETASG-HCAPVTCLAL-S-SDSNFLVTGS------------------QDTTIL 2063 (2342)
Q Consensus 2006 pDGklLASGS~-DGsIrVWDl~tgkll~tL~G-Ht~~VtcLAf-S-PDG~~LaSGS------------------~DGTVr 2063 (2342)
+||+++..... ++.|.+.|+++.++.+.+.- .......+++ + |++++++.++ .++++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 38886666554 55699999999998774432 1234778887 5 9999999885 245788
Q ss_pred EEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEE------EEecCCCEEEE
Q 000085 2064 LWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCC------CVSSDLGVVVS 2137 (2342)
Q Consensus 2064 VWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~V------afSPDg~lLaS 2137 (2342)
+.|..+.+...+...+. ....+.++++|+.+.+.+.+......+..... .-.+.|.-+ .+.++|+....
T Consensus 179 vID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~---~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA---AEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC---CSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred EEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccc---cccceEEEeeccceeEeccCCCeeEE
Confidence 99998866555543222 34567788999988777765321100000000 000001000 12245554432
Q ss_pred EeCCCcEEEEECCC--CeE-EEEEe-cCCcEEEEEecCCcEEEEE-eCCCeEEEEEeCCc-------------eeeeecC
Q 000085 2138 CSDSSDLLLHSIRR--GRL-IRRLV-GVDAHAVSLSSEGVIMTWN-KLQHTLSSFTLNGV-------------LVARAKL 2199 (2342)
Q Consensus 2138 GS~DGtIrIWDLrT--Gkl-IrsL~-gh~vssLSfSpDG~IlVwd-ssdGsI~I~dlnG~-------------~L~s~~~ 2199 (2342)
+.|.|.|.++ ++. ++.+. +.....+.++|||++++.. ..+..+.+|++... .... .
T Consensus 254 ----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~--v 327 (595)
T 1fwx_A 254 ----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE--P 327 (595)
T ss_dssp ----TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC--C
T ss_pred ----CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE--c
Confidence 5699999998 655 66664 3567889999999966555 55688999998743 1222 2
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC-----
Q 000085 2200 PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT----- 2274 (2342)
Q Consensus 2200 ~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T----- 2274 (2342)
.-......++|+++| ++.+... -|++|.+||+.+
T Consensus 328 ~vG~gP~h~aF~~dG-~aY~t~~----------------------------------------ldsqV~kwdi~~a~~~~ 366 (595)
T 1fwx_A 328 ELGLGPLHTAFDGRG-NAYTSLF----------------------------------------LDSQVVKWNIEDAIRAY 366 (595)
T ss_dssp BCCSCEEEEEECTTS-EEEEEET----------------------------------------TTTEEEEEEHHHHHHHH
T ss_pred CCCCCcceEEECCCC-eEEEEEe----------------------------------------cCCcEEEEEhhHhhhhh
Confidence 234578889999999 7765531 267899999877
Q ss_pred -----CeEEEEEecCCCCCe-----EEEEEecCCCEEEEEeC---CCcE----------EEEeCCCCChhhh
Q 000085 2275 -----LKVFHVLKLGEGQDI-----TALALNKDNTNLLVSTA---DKQL----------IVFTDPALSLKVV 2323 (2342)
Q Consensus 2275 -----gk~L~tL~lgHs~~I-----tsLafSPDG~~LaSGSs---DGsI----------rVWDi~sLs~k~L 2323 (2342)
.+.+.++. .|-.+- .++.++|||++|++... |+-+ .++|+.+..++.+
T Consensus 367 ~g~~~~~vi~kid-V~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv 437 (595)
T 1fwx_A 367 AGEKVDPIKDKLD-VHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLV 437 (595)
T ss_dssp HTCSCCCEEEEEE-CSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEE
T ss_pred cccccceeEEEee-cccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEE
Confidence 67788887 443321 22346899999998853 4432 7788754443333
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.94 E-value=6.9e-05 Score=88.71 Aligned_cols=254 Identities=10% Similarity=-0.023 Sum_probs=145.5
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~ 2081 (2342)
..+..+|. |..|+.++.|..|| .+++.+.....+...+.++...++|. |+.++.+ +..+|. ++......... .
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~-~ 97 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTK-K 97 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC---
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECC-C
Confidence 44555665 44556788899999 88887666555555677888877765 4445544 888886 44433322111 1
Q ss_pred CCCccccccCCCCCceeec-CCCccccccC-CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2082 SGMGTPGNSIGSSTPANAS-ADKSRRRRIE-GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s-~D~s~~~~i~-~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
......... ++. +..+. ..+...++.. ........+...+.++.+.+++. ++.++.++.|..+|.. |+.+..+.
T Consensus 98 ~~~~~~~~~-~~~-l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~ 173 (330)
T 3hxj_A 98 AIVSDFTIF-EDI-LYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK 173 (330)
T ss_dssp ---CCEEEE-TTE-EEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE
T ss_pred CcccCceEE-CCE-EEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe
Confidence 111112222 333 33333 2333333332 23333344445566667766676 5567788999999998 87776665
Q ss_pred cC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccccc
Q 000085 2160 GV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGL 2237 (2342)
Q Consensus 2160 gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l 2237 (2342)
.. ....+...++|.+.+.. +.+..++.+|..+-... .....+.++.+.++|...+.. .
T Consensus 174 ~~~~~~~~~~~d~~g~l~v~t---~~l~~~d~~g~~~~~~~-~~~~~~~~~~~~~~g~l~v~t-~--------------- 233 (330)
T 3hxj_A 174 TNDAITSAASIGKDGTIYFGS---DKVYAINPDGTEKWNFY-AGYWTVTRPAISEDGTIYVTS-L--------------- 233 (330)
T ss_dssp CSSCCCSCCEECTTCCEEEES---SSEEEECTTSCEEEEEC-CSSCCCSCCEECTTSCEEEEE-T---------------
T ss_pred cCCCceeeeEEcCCCEEEEEe---CEEEEECCCCcEEEEEc-cCCcceeceEECCCCeEEEEc-C---------------
Confidence 43 24556667788765543 67777775554443322 234567788888887665533 1
Q ss_pred CCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2238 NSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2238 ~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
++.|..+|. +++.+..+. .....+.++.+.+++ .|.+++.+|.|..++.
T Consensus 234 --------------------------~~gl~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 234 --------------------------DGHLYAINP-DGTEKWRFK-TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp --------------------------TTEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred --------------------------CCeEEEECC-CCCEeEEee-CCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 344566653 455555554 223334445555555 4677888888888874
No 237
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.90 E-value=0.0048 Score=71.76 Aligned_cols=224 Identities=10% Similarity=-0.022 Sum_probs=134.0
Q ss_pred EEEEEEcCCcEEEEecCCcccc-----eecccCCCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCccccccccCCCCC
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTL-----ETASGHCAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRTGTIEPSSG 2083 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll-----~tL~GHt~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t~~~~~~~~ 2083 (2342)
+|..+. .+.|+.+++++.... ..+......+.+++|++++..|+ +-..++.|.+++......
T Consensus 3 ~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~----------- 70 (267)
T 1npe_A 3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP----------- 70 (267)
T ss_dssp EEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-----------
T ss_pred EEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-----------
Confidence 344444 347888888765321 11222234578999999765554 555577888888765310
Q ss_pred CccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEec--
Q 000085 2084 MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRRLVG-- 2160 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrsL~g-- 2160 (2342)
...+........++++++++..+ ++....+.|.++++........+..
T Consensus 71 -----------------------------~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~ 121 (267)
T 1npe_A 71 -----------------------------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL 121 (267)
T ss_dssp -----------------------------EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred -----------------------------EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCC
Confidence 00011112456889999876555 4555678999999864332222221
Q ss_pred CCcEEEEEecC-CcEEEEEeC--CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccccc
Q 000085 2161 VDAHAVSLSSE-GVIMTWNKL--QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGL 2237 (2342)
Q Consensus 2161 h~vssLSfSpD-G~IlVwdss--dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l 2237 (2342)
.....++++++ |.+++.+.. .+.|..++++|..........-.....+++++++.+|+.+..
T Consensus 122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--------------- 186 (267)
T 1npe_A 122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--------------- 186 (267)
T ss_dssp SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---------------
T ss_pred CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---------------
Confidence 34678999996 455555543 468888888875433222123356789999999888876641
Q ss_pred CCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 000085 2238 NSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST-ADKQLIVFTDP 2316 (2342)
Q Consensus 2238 ~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS-sDGsIrVWDi~ 2316 (2342)
..+.|.++|.........+. + ......+++. +..|+++. ..+.|.+++..
T Consensus 187 -------------------------~~~~I~~~~~~g~~~~~~~~-~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 187 -------------------------GTHRAECLNPAQPGRRKVLE-G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp -------------------------TTTEEEEEETTEEEEEEEEE-C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred -------------------------CCCEEEEEecCCCceEEEec-C-CCCceEEEEe--CCEEEEEECCCCeEEEEeCC
Confidence 13578888887654433333 2 2334566654 45555554 56899999965
Q ss_pred CC
Q 000085 2317 AL 2318 (2342)
Q Consensus 2317 sL 2318 (2342)
+.
T Consensus 238 ~g 239 (267)
T 1npe_A 238 IS 239 (267)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.89 E-value=0.0053 Score=71.39 Aligned_cols=217 Identities=9% Similarity=-0.040 Sum_probs=135.5
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCcccccc
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
...+++++++. ++++-..++.|.+++.+++.....+........++++++++..|+ +-...+.|.+++...... .
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~-- 114 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-R-- 114 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E--
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-E--
Confidence 45689999765 555555678999999987654333333334678999999765554 445567888887754210 0
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCe
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD---SSDLLLHSIRRGR 2153 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~---DGtIrIWDLrTGk 2153 (2342)
............++++|++..++.+.. .+.|..+++.. .
T Consensus 115 -------------------------------------~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~ 156 (267)
T 1npe_A 115 -------------------------------------VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-T 156 (267)
T ss_dssp -------------------------------------EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-C
T ss_pred -------------------------------------EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-C
Confidence 000111134578999997666554443 36888888753 3
Q ss_pred EEEEEec---CCcEEEEEecCCc-EEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC
Q 000085 2154 LIRRLVG---VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229 (2342)
Q Consensus 2154 lIrsL~g---h~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~ 2229 (2342)
....+.. .....+++++++. +++.+...+.|..++..+........ .......+++. +..++.+..
T Consensus 157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d--~~~lyva~~------- 226 (267)
T 1npe_A 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDW------- 226 (267)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEEE--TTEEEEEET-------
T ss_pred CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-CCCCceEEEEe--CCEEEEEEC-------
Confidence 3333321 2367899999765 55556667899999987654332221 22334556543 455554431
Q ss_pred CcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCC
Q 000085 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNT 2299 (2342)
Q Consensus 2230 i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~ 2299 (2342)
..+.|.++|..+++.+..+..+.......+++.|++.
T Consensus 227 ---------------------------------~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 227 ---------------------------------KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ---------------------------------TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred ---------------------------------CCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 1467999999999999888744333578888888875
No 239
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.87 E-value=0.0016 Score=79.43 Aligned_cols=257 Identities=12% Similarity=0.077 Sum_probs=136.9
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccC---------CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGH---------CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GH---------t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
+..+++++.++.|..+|..+|+.+...... ...+.+. ...++..++.++.|+.|..+|..+++.......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 456777778899999999999877554432 1223222 122466888899999999999998876544321
Q ss_pred CCCCCCccccccCCCCCceeecCCC-cccccc--CCceEEecCCCCC-----eEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADK-SRRRRI--EGPIHVLRGHHRE-----ILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i--~~~l~~L~GHs~~-----Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
.. .+.......++ .+.++..++ ...++. ++.+-........ .....+. +..++.++.+|.+..+|..
T Consensus 132 ~~--~~~~~p~~~~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~ 206 (376)
T 3q7m_A 132 AG--EALSRPVVSDG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLME 206 (376)
T ss_dssp SS--CCCSCCEEETT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETT
T ss_pred CC--ceEcCCEEECC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECC
Confidence 11 11111111122 333333222 222221 1122122111110 0111222 4568888899999999999
Q ss_pred CCeEEEEEecCCc------------EEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEE
Q 000085 2151 RGRLIRRLVGVDA------------HAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSA 2217 (2342)
Q Consensus 2151 TGklIrsL~gh~v------------ssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~L 2217 (2342)
+|+.+........ .....-.++. ++....++.+..++.. |+.+-... .....++... +..+
T Consensus 207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-v~~~~~~g~l~~~d~~tG~~~w~~~---~~~~~~~~~~--~~~l 280 (376)
T 3q7m_A 207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGV-VFALAYNGNLTALDLRSGQIMWKRE---LGSVNDFIVD--GNRI 280 (376)
T ss_dssp TCCEEEEEECCC-----------CCCCCCEEETTE-EEEECTTSCEEEEETTTCCEEEEEC---CCCEEEEEEE--TTEE
T ss_pred CCcEEEEEecccCCCCcccccccccCCCcEEECCE-EEEEecCcEEEEEECCCCcEEeecc---CCCCCCceEE--CCEE
Confidence 9998877653210 0000001222 2333345556666653 33322211 1223333332 4455
Q ss_pred EEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecC
Q 000085 2218 LIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2218 aSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
++++ .++.|..+|..+++.+..........+..... .
T Consensus 281 ~~~~-----------------------------------------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~ 317 (376)
T 3q7m_A 281 YLVD-----------------------------------------QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--Y 317 (376)
T ss_dssp EEEE-----------------------------------------TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--E
T ss_pred EEEc-----------------------------------------CCCeEEEEECCCCcEEEeecccCCCcccCCEE--E
Confidence 5443 15678999999999887765222222333333 2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCC
Q 000085 2298 NTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2298 G~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
+..|++++.+|.|.++|..+..
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEeCCCeEEEEECCCCc
Confidence 5678899999999999966553
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.84 E-value=0.00094 Score=89.08 Aligned_cols=289 Identities=11% Similarity=0.029 Sum_probs=148.4
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCC----CCeEE-EEecCCCCEEEEEeC------CCceEEEeccCCcccccc
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHC----APVTC-LALSSDSNFLVTGSQ------DTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt----~~Vtc-LAfSPDG~~LaSGS~------DGTVrVWDl~tg~~i~t~ 2076 (2342)
+..|+.++.|+.|..+|..+|+.+-.+.... ..+++ ..+. ++ .++.++. ++.|..+|..+++.+...
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4567778889999999999999876654321 11111 1111 34 4555443 589999999998766554
Q ss_pred ccCCCCCCccccccCCCCCc--eeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCc-----------
Q 000085 2077 TIEPSSGMGTPGNSIGSSTP--ANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSD----------- 2143 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~L--as~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGt----------- 2143 (2342)
.......... +. ...+ ....+++...|. ..++......++++++..+++.++.++.
T Consensus 195 ~~~~~~p~~~--~~--~~~~~~~~~~~~g~~~w~-------~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~ 263 (668)
T 1kv9_A 195 YTVPGDPALP--YE--HPELREAAKTWQGDQYWK-------LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGG 263 (668)
T ss_dssp ESSCCCTTSC--CS--SHHHHHHHTTCCSSCHHH-------HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTC
T ss_pred cccCCCCCcc--cc--ccccccccccCCccceee-------eCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCC
Confidence 2110000000 00 0000 000001111111 1122233345788888888888887763
Q ss_pred --------EEEEECCCCeEEEEEec--CC---------cEEEEEecCCc---EEEEEeCCCeEEEEEeC-CceeeeecCC
Q 000085 2144 --------LLLHSIRRGRLIRRLVG--VD---------AHAVSLSSEGV---IMTWNKLQHTLSSFTLN-GVLVARAKLP 2200 (2342)
Q Consensus 2144 --------IrIWDLrTGklIrsL~g--h~---------vssLSfSpDG~---IlVwdssdGsI~I~dln-G~~L~s~~~~ 2200 (2342)
|..+|..+|+.+..+.. |. .....+..+|+ +++....+|.+++++.. |+.+......
T Consensus 264 gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~ 343 (668)
T 1kv9_A 264 GDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFG 343 (668)
T ss_dssp CCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred CCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccc
Confidence 99999999999888764 21 11122223554 34444555666666543 4333211110
Q ss_pred CCC-----------------------------------CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcc
Q 000085 2201 LSG-----------------------------------SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTE 2245 (2342)
Q Consensus 2201 Hs~-----------------------------------~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~i 2245 (2342)
... .-..++++|+...+++...+...........|... ...
T Consensus 344 ~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~----~~~ 419 (668)
T 1kv9_A 344 KVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR----KAF 419 (668)
T ss_dssp CCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC----SSC
T ss_pred ccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc----ccc
Confidence 000 01125677776666654422110000000000000 000
Q ss_pred ccccccccccCCCC--ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2246 DFDLASDQSVDNNR--FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2246 aFspd~~~s~ss~~--ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
+..... ..... ....+|.|..||+.+++.+..... ..++....+...+..+++|+.||.|++||..+.
T Consensus 420 -~~g~~~--~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 420 -NTAAGF--ADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp -CCSSCG--GGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred -ccCccc--cccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence 000000 00000 112358999999999999888772 334444455667888999999999999997654
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.73 E-value=0.011 Score=79.84 Aligned_cols=218 Identities=9% Similarity=0.019 Sum_probs=133.4
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc-------CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG-------HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G-------Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
.+.++...++|.+.+ |+.++-+.+||..+++....... ....|.++...++|.+.+ |+.+ -|.+||..++
T Consensus 216 ~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~ 292 (795)
T 4a2l_A 216 QIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTD 292 (795)
T ss_dssp CEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTT
T ss_pred eeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCC
Confidence 345677777777555 44455588999877654332211 235799999998887555 4445 5888887765
Q ss_pred ccccccc------cCCCCCCccccccCCCCCceeecCCCccccccC-CceEEecC-------CCCCeEEEEEecCCCEEE
Q 000085 2071 FTSRTGT------IEPSSGMGTPGNSIGSSTPANASADKSRRRRIE-GPIHVLRG-------HHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2071 ~~i~t~~------~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~-~~l~~L~G-------Hs~~Vt~VafSPDg~lLa 2136 (2342)
....... ......+.++....+|...+....++...++.. .....+.. ....|.+++..++|. +.
T Consensus 293 ~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lW 371 (795)
T 4a2l_A 293 SFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LW 371 (795)
T ss_dssp EEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EE
T ss_pred eEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EE
Confidence 4322110 112245666667777776665555555444322 11222211 245699999888877 45
Q ss_pred EEeCCCcEEEEECCCCeEEEEE----------ecCCcEEEEEecCCc-EEEEEeCCCeEEEEEeCCceeeeecC----CC
Q 000085 2137 SCSDSSDLLLHSIRRGRLIRRL----------VGVDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVLVARAKL----PL 2201 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrTGklIrsL----------~gh~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~L~s~~~----~H 2201 (2342)
.|+.++-|..||..++...... ....+..++..++|. +.+ +..++-+..|+..+........ ..
T Consensus 372 iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi-gt~~~Gl~~~d~~~~~~~~~~~~~~~l~ 450 (795)
T 4a2l_A 372 IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI-GTHAGGLSILHRNSGQVENFNQRNSQLV 450 (795)
T ss_dssp EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEE-EETTTEEEEEETTTCCEEEECTTTSCCS
T ss_pred EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE-EeCcCceeEEeCCCCcEEEeecCCCCcC
Confidence 5788888999999887654432 123467778888888 444 4455668888876544333221 13
Q ss_pred CCCeEEEEEccCCCEEEEE
Q 000085 2202 SGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2202 s~~ItsLafSPDGk~LaSG 2220 (2342)
...|.++...++|.+.+..
T Consensus 451 ~~~v~~i~~d~~g~lwigt 469 (795)
T 4a2l_A 451 NENVYAILPDGEGNLWLGT 469 (795)
T ss_dssp CSCEEEEEECSSSCEEEEE
T ss_pred CCeeEEEEECCCCCEEEEe
Confidence 4679999998888876643
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.72 E-value=8.6e-06 Score=100.61 Aligned_cols=200 Identities=11% Similarity=0.002 Sum_probs=99.3
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
++..++.++.|+.+..|+..+|. ..|.+.. ..+.+ ..+..++.++++++.||.|+.||..+|+.+..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~--~~W~~~~------~~~~s---~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS--IKWTLKE------DPVLQ---VPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC--EEEEEEC------CCSCC---CC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred eCCEEEEEcCCCEEEEEECCCCC--EEEEecC------CCcee---cceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence 45666777788899999977643 3454422 12222 3345677788888899999999999998876665
Q ss_pred cCCCC-eEE-EEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC-cccccc--C
Q 000085 2036 GHCAP-VTC-LALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-SRRRRI--E 2110 (2342)
Q Consensus 2036 GHt~~-Vtc-LAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i--~ 2110 (2342)
.+... +.+ ..+. ++..|++|+.|++|..||..+++......... ....+|++..++++..++ ...++. +
T Consensus 77 ~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 77 FTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp CCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSS
T ss_pred ccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCC
Confidence 44221 111 1111 45678889999999999999987665542211 123345666666555443 222332 2
Q ss_pred CceEEecCCCCCeEEEEEecCC---CEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcE
Q 000085 2111 GPIHVLRGHHREILCCCVSSDL---GVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVI 2174 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg---~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~I 2174 (2342)
+.+..+..+. ....+++.+. ..++.++.||.|+.||.++|+.+.++.... ....+++.+|.+
T Consensus 151 ~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 151 ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred CEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 2222221110 1122233332 567788999999999999999988776433 233445566654
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.70 E-value=0.0023 Score=80.99 Aligned_cols=225 Identities=14% Similarity=0.098 Sum_probs=136.1
Q ss_pred CCCe-EEecCCCceEEEecCCCCCCCccccccccee----ccccCcceeEEEEEcCCCCEEEEEEcC------CcEEEEe
Q 000085 1956 HGKA-SASPASGTFLRMFKGPGGSGADEWHFPRALA----FASSGIRSSAVVSITHDKEIITGGHVD------GSIKLLT 2024 (2342)
Q Consensus 1956 ~Gk~-LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls----~hs~gI~Svt~VafSpDGklLASGS~D------GsIrVWD 2024 (2342)
+++. ++++..+..|.+++..+.... -...+.+. ....+...-..+.++|+| ++++...+ |.|.++|
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~--p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPRE--PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTS--CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCC--ceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 3444 455667788999986541110 01111110 001122233457789999 66665555 7899999
Q ss_pred cCCcccceecccCCC---CeEEEEecCCCCEEEEEe-------------------CCCceEEEeccCCccccccccCCCC
Q 000085 2025 SDGAKTLETASGHCA---PVTCLALSSDSNFLVTGS-------------------QDTTILLWRIHRAFTSRTGTIEPSS 2082 (2342)
Q Consensus 2025 l~tgkll~tL~GHt~---~VtcLAfSPDG~~LaSGS-------------------~DGTVrVWDl~tg~~i~t~~~~~~~ 2082 (2342)
..+++.+.++....+ --..+-|+|+++.++|.. .+.+|.+||+.+++...++.
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~----- 245 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT----- 245 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE-----
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe-----
Confidence 999999888763222 123477899999999885 36899999998753222110
Q ss_pred CCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEE--ecCCCEEEEEe------CCCcEEEEECCCCeE
Q 000085 2083 GMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCV--SSDLGVVVSCS------DSSDLLLHSIRRGRL 2154 (2342)
Q Consensus 2083 ~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~Vaf--SPDg~lLaSGS------~DGtIrIWDLrTGkl 2154 (2342)
+.........+.| +|++++++.++ .+++|.+|....|..
T Consensus 246 ---------------------------------vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~ 292 (462)
T 2ece_A 246 ---------------------------------LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW 292 (462)
T ss_dssp ---------------------------------SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE
T ss_pred ---------------------------------cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce
Confidence 0001122334445 88988877666 466887776655532
Q ss_pred --EEEE--e------------------cCCcEEEEEecCCcEEEEEe-CCCeEEEEEeC----CceeeeecCC-------
Q 000085 2155 --IRRL--V------------------GVDAHAVSLSSEGVIMTWNK-LQHTLSSFTLN----GVLVARAKLP------- 2200 (2342)
Q Consensus 2155 --IrsL--~------------------gh~vssLSfSpDG~IlVwds-sdGsI~I~dln----G~~L~s~~~~------- 2200 (2342)
.+.+ . +.....+.+|+||+++..+. ..+.|.+|++. .+.+.....+
T Consensus 293 ~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~ 372 (462)
T 2ece_A 293 NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRAD 372 (462)
T ss_dssp EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBC
T ss_pred eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccc
Confidence 1211 1 12246788999999776654 45789999984 2333333222
Q ss_pred C------CCCeEEEEEccCCCEEEEEe
Q 000085 2201 L------SGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2201 H------s~~ItsLafSPDGk~LaSGS 2221 (2342)
| .+....++++|||++|+++.
T Consensus 373 ~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 373 HPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 0 01368899999999999873
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.69 E-value=0.031 Score=75.51 Aligned_cols=215 Identities=9% Similarity=0.030 Sum_probs=135.3
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc--------CCCCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG--------HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G--------Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
.+.+++..++|++.+ |+.++-|..|+..+++....... ....|.+++..++|+.|..|+.++-+.+||..+
T Consensus 358 ~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 358 VVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp SEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred eeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence 466788888887554 66777899999887654332211 246799999988888677788878899999887
Q ss_pred Cccccccc---cCCCCCCccccccCCCCCceeecCCCccccccCCc-eEEec-------CCCCCeEEEEEecCCCEEEEE
Q 000085 2070 AFTSRTGT---IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP-IHVLR-------GHHREILCCCVSSDLGVVVSC 2138 (2342)
Q Consensus 2070 g~~i~t~~---~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~-l~~L~-------GHs~~Vt~VafSPDg~lLaSG 2138 (2342)
+...+... ......+.++...++|...+... ++...++.... ...+. -+...|.++...++|.+.+..
T Consensus 437 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 515 (795)
T 4a2l_A 437 GQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG 515 (795)
T ss_dssp CCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred CcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe
Confidence 54322111 01233456666666676555544 55544443221 22221 123678999998888866544
Q ss_pred eCCCcEEEEECCCCeEEEEEec---------CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC---CCCCeE
Q 000085 2139 SDSSDLLLHSIRRGRLIRRLVG---------VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP---LSGSIG 2206 (2342)
Q Consensus 2139 S~DGtIrIWDLrTGklIrsL~g---------h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~---Hs~~It 2206 (2342)
. +.+..||..+++. .+.. ..+..+..+++|.+.+... +-+..|+............ ....|.
T Consensus 516 -~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--~Gl~~~d~~~~~~~~~~~~~gl~~~~i~ 589 (795)
T 4a2l_A 516 -E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR--EGFYCFNEKDKQIKRYNTTNGLPNNVVY 589 (795)
T ss_dssp -S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES--SCEEEEETTTTEEEEECGGGTCSCSCEE
T ss_pred -C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC--CCceeECCCCCcEEEeCCCCCCchhheE
Confidence 4 5688899888776 3321 1256777788888665443 3567777665444432211 245789
Q ss_pred EEEEccCCCEEEEE
Q 000085 2207 CMEISLDGHSALIG 2220 (2342)
Q Consensus 2207 sLafSPDGk~LaSG 2220 (2342)
++...++|.+.+++
T Consensus 590 ~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 590 GILEDSFGRLWLST 603 (795)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEECCCCCEEEEc
Confidence 99999999887755
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.66 E-value=0.0032 Score=84.05 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=26.1
Q ss_pred EEecCCC---EEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2127 CVSSDLG---VVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2127 afSPDg~---lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
.+..+|+ .++.++.+|.++++|..+|+.+....
T Consensus 306 d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 306 ELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp EEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 3334665 68899999999999999999986543
No 246
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.51 E-value=0.0086 Score=71.45 Aligned_cols=219 Identities=13% Similarity=0.051 Sum_probs=124.0
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCc--eEEEeccCCccccccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT--ILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGT--VrVWDl~tg~~i~t~~ 2077 (2342)
..++|+++|+++++...++.|..||.++. ....+. -...+.++++.++|+++++...... |..+|..++.......
T Consensus 35 egia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~ 112 (306)
T 2p4o_A 35 ENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT 112 (306)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred ceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEe
Confidence 34889999998887778899999998753 332222 2346889999999997766544333 5555655554321111
Q ss_pred cCCCCCCccccccCCCCCceeecCC-CccccccCCc---eEE---------ecCCCCCeEEEEEecCCCEE-EEEeCCCc
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASAD-KSRRRRIEGP---IHV---------LRGHHREILCCCVSSDLGVV-VSCSDSSD 2143 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D-~s~~~~i~~~---l~~---------L~GHs~~Vt~VafSPDg~lL-aSGS~DGt 2143 (2342)
.........++..+++..+++.... .+...+.... +.. ..+.-...+.+ +++++.+ ++-...+.
T Consensus 113 ~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~ 190 (306)
T 2p4o_A 113 LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKML 190 (306)
T ss_dssp CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTE
T ss_pred CCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCE
Confidence 1000011111122222222222211 1222222111 100 00111234455 7888765 45556789
Q ss_pred EEEEECCC-CeE--EEEE-ecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC-CCCCeEEEEEc---cCCC
Q 000085 2144 LLLHSIRR-GRL--IRRL-VGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP-LSGSIGCMEIS---LDGH 2215 (2342)
Q Consensus 2144 IrIWDLrT-Gkl--IrsL-~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~-Hs~~ItsLafS---PDGk 2215 (2342)
|.++|+.. +.. ...+ .......++++++|++++.+...+.|.+|+..|......... .....++++|. +|+.
T Consensus 191 I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~ 270 (306)
T 2p4o_A 191 LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCT 270 (306)
T ss_dssp EEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred EEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCC
Confidence 99999864 331 1112 112345689999999888877788999999887653221111 23568999999 8988
Q ss_pred EEEEEeC
Q 000085 2216 SALIGVN 2222 (2342)
Q Consensus 2216 ~LaSGS~ 2222 (2342)
.|++++.
T Consensus 271 ~LyVt~~ 277 (306)
T 2p4o_A 271 AIYVVTN 277 (306)
T ss_dssp EEEEEEC
T ss_pred EEEEECC
Confidence 8877753
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.47 E-value=0.0057 Score=80.19 Aligned_cols=296 Identities=10% Similarity=0.015 Sum_probs=145.5
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceeccc--CC--CCeEE-EEecCCCCEEEEEeC------CCceEEEeccCCcccccc
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASG--HC--APVTC-LALSSDSNFLVTGSQ------DTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~G--Ht--~~Vtc-LAfSPDG~~LaSGS~------DGTVrVWDl~tg~~i~t~ 2076 (2342)
+..++.++.|+.+..+|..+|+.+-.... |. ..+++ .... ++ .++.++. ++.|..+|..+++.+.+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 55677788899999999999988765432 11 11221 1111 34 5555554 799999999998765544
Q ss_pred ccCCCCCCccccccCC--CCCceeec-CCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC------------
Q 000085 2077 TIEPSSGMGTPGNSIG--SSTPANAS-ADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS------------ 2141 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpD--G~~Las~s-~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D------------ 2141 (2342)
...... ......|. ......+. ..+...|.- ... ..+.......+++.++...++.++.+
T Consensus 193 ~~~~~~--~~~~~~p~~~~~~~~~G~~~~g~~~w~~--~~~-~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd 267 (571)
T 2ad6_A 193 FATGSD--DSVRLAKDFNSANPHYGQFGLGTKTWEG--DAW-KIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD 267 (571)
T ss_dssp ESSSCH--HHHTBCTTTTTTCGGGCCSSHHHHTSST--TGG-GGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred ccCCCc--cccccCcccccccccccccccccccCcc--cce-ecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCC
Confidence 211100 00000000 00000000 000001110 000 00111111234566666666655532
Q ss_pred ----CcEEEEECCCCeEEEEEecC-----------CcEEEEEecCCc---EEEEEeCCCeEEEEEeC-CceeeeecCCC-
Q 000085 2142 ----SDLLLHSIRRGRLIRRLVGV-----------DAHAVSLSSEGV---IMTWNKLQHTLSSFTLN-GVLVARAKLPL- 2201 (2342)
Q Consensus 2142 ----GtIrIWDLrTGklIrsL~gh-----------~vssLSfSpDG~---IlVwdssdGsI~I~dln-G~~L~s~~~~H- 2201 (2342)
+.|..+|..+|+.+..+... ....+....+|+ +++....+|.+++++.. |+.+-......
T Consensus 268 ~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~ 347 (571)
T 2ad6_A 268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA 347 (571)
T ss_dssp CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred ceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence 35999999999998877532 111222234663 44555666777777653 44433322211
Q ss_pred C-----------CCe--------------------------EEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC-CCC
Q 000085 2202 S-----------GSI--------------------------GCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK-QSG 2243 (2342)
Q Consensus 2202 s-----------~~I--------------------------tsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~-~~~ 2243 (2342)
. .++ ..++++|++..+++.+.+... .++..... ..+
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~------~~~~~~~~~~~g 421 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICM------DWEPFMLPYRAG 421 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEE------EEEECCCCCCTT
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccc------cccccccccccC
Confidence 0 011 246788888888777532110 00000000 000
Q ss_pred ccccccc--cccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2244 TEDFDLA--SDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2244 ~iaFspd--~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
...+... ........ ....++.|..||+.+++.+.++.. ...+.+..+...+..+++++.||.|++||..+.+
T Consensus 422 ~~~~g~~~~~~~~~~~~-~~~~~g~l~a~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 422 QFFVGATLAMYPGPNGP-TKKEMGQIRAFDLTTGKAKWTKWE--KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp SCCCCEEEEEEECTTST-TSCCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CccccccceeccCcccc-CCCCCCeEEEEECCCCCEEEEecC--CCCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 0000000 00000000 001368999999999999888773 2333333344456678889999999999976553
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.47 E-value=0.012 Score=70.04 Aligned_cols=203 Identities=8% Similarity=0.025 Sum_probs=127.6
Q ss_pred cceecccCCC--CeEEEEecCCCCEEEEEeC--CCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcc
Q 000085 2030 TLETASGHCA--PVTCLALSSDSNFLVTGSQ--DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSR 2105 (2342)
Q Consensus 2030 ll~tL~GHt~--~VtcLAfSPDG~~LaSGS~--DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~ 2105 (2342)
.+.++. |.. ....++|++|+...++.+. +++|.+.|+.+++......
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~---------------------------- 61 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK---------------------------- 61 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE----------------------------
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe----------------------------
Confidence 344443 443 3578999998755555543 6899999999875433220
Q ss_pred ccccCCceEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeE
Q 000085 2106 RRRIEGPIHVLRGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTL 2184 (2342)
Q Consensus 2106 ~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI 2184 (2342)
+..+ .....+++. ++.+ ++.-.++.+.++|..+++.+.++......-..+++||..++....++.+
T Consensus 62 ----------l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l 128 (266)
T 2iwa_A 62 ----------MDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSIL 128 (266)
T ss_dssp ----------CCTT-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEE
T ss_pred ----------cCCC-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeE
Confidence 1111 111234444 4444 4555689999999999999999864311223456677654444457888
Q ss_pred EEEEeCCc-eeeeecCC-C---CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCC
Q 000085 2185 SSFTLNGV-LVARAKLP-L---SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2185 ~I~dlnG~-~L~s~~~~-H---s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ 2259 (2342)
.+++.... .+.....+ + -..++.+.|. +|. +.+...
T Consensus 129 ~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~------------------------------------- 169 (266)
T 2iwa_A 129 YEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIW------------------------------------- 169 (266)
T ss_dssp EEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET-------------------------------------
T ss_pred EEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEEecC-------------------------------------
Confidence 88887653 33333222 1 1236677777 663 443321
Q ss_pred ccCCCCeEEEEECCCCeEEEEEecCC------------CCCeEEEEEecCCCEEE-EEeCCCcEEEEeCC
Q 000085 2260 FDFPSPSICFLDLHTLKVFHVLKLGE------------GQDITALALNKDNTNLL-VSTADKQLIVFTDP 2316 (2342)
Q Consensus 2260 ias~DGsIrIWDL~Tgk~L~tL~lgH------------s~~ItsLafSPDG~~La-SGSsDGsIrVWDi~ 2316 (2342)
.++.|.+.|..+++++..+..+. ....+.++|+|+++.|+ ++...+.+.+.++.
T Consensus 170 ---~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 170 ---QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp ---TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred ---CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 14679999999999999997431 13568999999986555 55678889888853
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.47 E-value=0.0048 Score=73.44 Aligned_cols=176 Identities=9% Similarity=0.034 Sum_probs=115.9
Q ss_pred EEEEcCCCCEEEEEEc--CCcEEEEecCCcccceecccCC-CCeEEEEecCCCCEEEE-EeCCCceEEEeccCCcccccc
Q 000085 2001 VVSITHDKEIITGGHV--DGSIKLLTSDGAKTLETASGHC-APVTCLALSSDSNFLVT-GSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~--DGsIrVWDl~tgkll~tL~GHt-~~VtcLAfSPDG~~LaS-GS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
-+.|++|+.+.++.+. ++.|+++|+.+++.+..+.-.. .....+++. +..|+. .-.++++.++|..+.+.+.++
T Consensus 25 Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 25 GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence 3888998765555443 6899999999999888764211 122345554 445544 446789999999875433221
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
. .+ ... ...+++|++.++.+..++.|.++|..+.+.++
T Consensus 103 ~---------------------------------------~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~ 140 (266)
T 2iwa_A 103 T---------------------------------------HQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIK 140 (266)
T ss_dssp E---------------------------------------CC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEE
T ss_pred E---------------------------------------CC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEE
Confidence 0 11 011 12245677777766778999999999999888
Q ss_pred EEecC-------CcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCC------------CCCCeEEEEEccCCCE
Q 000085 2157 RLVGV-------DAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLP------------LSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2157 sL~gh-------~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~------------Hs~~ItsLafSPDGk~ 2216 (2342)
++.-. ....+.+. +|.+++-...++.|.+.+.. ++.+.....+ .....+.++|+|+++.
T Consensus 141 ~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~ 219 (266)
T 2iwa_A 141 KHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR 219 (266)
T ss_dssp EEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE
T ss_pred EEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCE
Confidence 87632 13456666 78766655567889888885 5454444332 1146689999999987
Q ss_pred EEEEe
Q 000085 2217 ALIGV 2221 (2342)
Q Consensus 2217 LaSGS 2221 (2342)
+++++
T Consensus 220 lfVTg 224 (266)
T 2iwa_A 220 IFVTG 224 (266)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 77665
No 250
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.41 E-value=0.042 Score=74.12 Aligned_cols=217 Identities=7% Similarity=-0.024 Sum_probs=126.0
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc-------CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG-------HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G-------Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
.+.++...++|.+.++ +.+ -+.+||..+++....... ....|.++...++|. |..|+..+-|.++|..+.
T Consensus 212 ~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQN 288 (781)
T ss_dssp SEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC
T ss_pred ceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCC
Confidence 3556788888886664 444 688999876654322111 245699999987775 455666566788888764
Q ss_pred ccccccc-------------cCCCCCCccccccCCCCCceeecCCCccccccCC-ceEEec----------CCCCCeEEE
Q 000085 2071 FTSRTGT-------------IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG-PIHVLR----------GHHREILCC 2126 (2342)
Q Consensus 2071 ~~i~t~~-------------~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~-~l~~L~----------GHs~~Vt~V 2126 (2342)
....... ......+.++....+|...+.....++..++... ....+. .....|.++
T Consensus 289 ~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i 368 (781)
T 3v9f_A 289 QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSV 368 (781)
T ss_dssp ---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEE
T ss_pred eeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEE
Confidence 3221110 1122345566666666655555455554443321 222221 123568999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeEEEE-----EecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecC--
Q 000085 2127 CVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR-----LVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKL-- 2199 (2342)
Q Consensus 2127 afSPDg~lLaSGS~DGtIrIWDLrTGklIrs-----L~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~-- 2199 (2342)
+..+++. +..|+.++-|..+|..++..... +....+..+...++|.+.+ +...+-+..|+.....+.....
T Consensus 369 ~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~ 446 (781)
T 3v9f_A 369 CDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEK 446 (781)
T ss_dssp EECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTT
T ss_pred EEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCC
Confidence 8887776 45567667799999876544321 1123366777777887665 3344567777765444443322
Q ss_pred CCCCCeEEEEEccCCCEEEE
Q 000085 2200 PLSGSIGCMEISLDGHSALI 2219 (2342)
Q Consensus 2200 ~Hs~~ItsLafSPDGk~LaS 2219 (2342)
.....|.++...++|...+.
T Consensus 447 ~~~~~v~~i~~d~~g~lwig 466 (781)
T 3v9f_A 447 NELLDVRVFYEDKNKKIWIG 466 (781)
T ss_dssp TCCCCEEEEEECTTSEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEE
Confidence 13467999998888876653
No 251
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.39 E-value=0.0073 Score=80.12 Aligned_cols=276 Identities=8% Similarity=-0.054 Sum_probs=140.9
Q ss_pred EEEEcC-CCCEEEEEEcCC-----------cEEEEecCCcccce--ecc-cCCCCeEEEEecCCCCEEEEEeC-CCceEE
Q 000085 2001 VVSITH-DKEIITGGHVDG-----------SIKLLTSDGAKTLE--TAS-GHCAPVTCLALSSDSNFLVTGSQ-DTTILL 2064 (2342)
Q Consensus 2001 ~VafSp-DGklLASGS~DG-----------sIrVWDl~tgkll~--tL~-GHt~~VtcLAfSPDG~~LaSGS~-DGTVrV 2064 (2342)
.+++.+ +|++++.|+.++ .+.+||..+++... .+. .+.....++++..+++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 356667 889888887653 58899998876432 222 23333345677889999999984 568999
Q ss_pred EeccCCccccccccCCCCCCccccccCCCCCceeec-CCCc------cccccCCce-EEecC-----CCCCeEEEEEecC
Q 000085 2065 WRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANAS-ADKS------RRRRIEGPI-HVLRG-----HHREILCCCVSSD 2131 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s-~D~s------~~~~i~~~l-~~L~G-----Hs~~Vt~VafSPD 2131 (2342)
||..+..-...........-......++++.++.++ .++. ..++..... ..+.. ....-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 998875422211111111112233445777777766 2321 112221111 11100 0000000111234
Q ss_pred CCEEEEEeCCC---------cEEEEECCCCeEEEEEecC-----------CcEEEEEe-cCCcEEEEEeCCC--------
Q 000085 2132 LGVVVSCSDSS---------DLLLHSIRRGRLIRRLVGV-----------DAHAVSLS-SEGVIMTWNKLQH-------- 2182 (2342)
Q Consensus 2132 g~lLaSGS~DG---------tIrIWDLrTGklIrsL~gh-----------~vssLSfS-pDG~IlVwdssdG-------- 2182 (2342)
+...+.|+.|| .+..||..+.......... ....+.+. .++++++++..++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 44445555443 5678888877644332211 12333343 4788988886432
Q ss_pred ---eEEEEEeCCceeeee---cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccC
Q 000085 2183 ---TLSSFTLNGVLVARA---KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVD 2256 (2342)
Q Consensus 2183 ---sI~I~dlnG~~L~s~---~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~s 2256 (2342)
.+.+|+.....-... ..+....-.++++.++|+.++.|+.+.... +. ..
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~-------~~------------~~------ 484 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-------FE------------DS------ 484 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT-------TC------------CC------
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcC-------cC------------CC------
Confidence 456666543221111 122222234556778999999887432200 00 00
Q ss_pred CCCccCCCCeEEEEECCCCeEEEEEecCC-CCCeEEEEEecCCCEEEEEeC
Q 000085 2257 NNRFDFPSPSICFLDLHTLKVFHVLKLGE-GQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2257 s~~ias~DGsIrIWDL~Tgk~L~tL~lgH-s~~ItsLafSPDG~~LaSGSs 2306 (2342)
..-..+.+||..+.+-...-...+ .....+..+.+||+.++.||.
T Consensus 485 -----~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 485 -----TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp -----SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred -----CcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 012457888887765322111111 112234556799999999985
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.33 E-value=0.01 Score=70.46 Aligned_cols=175 Identities=11% Similarity=0.088 Sum_probs=112.1
Q ss_pred EEEEcCCCCEEEEEEcCC--cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe-CCCceEEEeccCCccccccc
Q 000085 2001 VVSITHDKEIITGGHVDG--SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS-QDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DG--sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS-~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
-+.|+ ++.+..+.+.+| .|+++|+.+++.++.+.-.. ......+.++++.|+... .++.+.++|..+.+.+.++.
T Consensus 47 GL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~ 124 (262)
T 3nol_A 47 GFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN 124 (262)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred eEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence 37777 677777777766 89999999999888775433 233322333455665554 58899999998864433220
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
..++ + .. +++|++.++.+..++.|.++|..+.+.+++
T Consensus 125 --------------------------------------~~~e-G--~g--lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 125 --------------------------------------YDGE-G--WG--LTHNDQYLIMSDGTPVLRFLDPESLTPVRT 161 (262)
T ss_dssp --------------------------------------CSSC-C--CC--EEECSSCEEECCSSSEEEEECTTTCSEEEE
T ss_pred --------------------------------------CCCC-c--eE--EecCCCEEEEECCCCeEEEEcCCCCeEEEE
Confidence 0111 1 22 335666666666678899999999999888
Q ss_pred EecC----C---cEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCC-----------CCCCeEEEEEccCCCEEE
Q 000085 2158 LVGV----D---AHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLP-----------LSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2158 L~gh----~---vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~-----------Hs~~ItsLafSPDGk~La 2218 (2342)
+... . ..-+.+. +|.+.+-.-.+..|.+.+.. |+.+...... -..-.+.|+|+|+++.|+
T Consensus 162 I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf 240 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF 240 (262)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred EEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence 7642 1 2235554 77766555556777777764 4444443332 124669999999888777
Q ss_pred EEe
Q 000085 2219 IGV 2221 (2342)
Q Consensus 2219 SGS 2221 (2342)
+.+
T Consensus 241 VTG 243 (262)
T 3nol_A 241 VTG 243 (262)
T ss_dssp EEE
T ss_pred EEC
Confidence 665
No 253
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.31 E-value=0.05 Score=73.37 Aligned_cols=218 Identities=9% Similarity=-0.062 Sum_probs=128.4
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec--------------ccCCCCeEEEEecCCCCEEEEEeCCCceE
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA--------------SGHCAPVTCLALSSDSNFLVTGSQDTTIL 2063 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL--------------~GHt~~VtcLAfSPDG~~LaSGS~DGTVr 2063 (2342)
.+.++...++|.+.+ |+..+-|.++|..+++..... .-....|.++...++|. |..|+.++-|.
T Consensus 259 ~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~ 336 (781)
T 3v9f_A 259 YIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGIN 336 (781)
T ss_dssp CEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEE
T ss_pred eEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEE
Confidence 356677778887554 555466888888766432211 11346799999988875 56677777888
Q ss_pred EEeccCCccccccc--------cCCCCCCccccccCCCCCceeecCCCccccccCCc-eEEe----cCCCCCeEEEEEec
Q 000085 2064 LWRIHRAFTSRTGT--------IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP-IHVL----RGHHREILCCCVSS 2130 (2342)
Q Consensus 2064 VWDl~tg~~i~t~~--------~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~-l~~L----~GHs~~Vt~VafSP 2130 (2342)
.++........... ......+.++....+|...+.....+...++.... ...+ ......|.++...+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 416 (781)
T 3v9f_A 337 FISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS 416 (781)
T ss_dssp EECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT
T ss_pred EeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC
Confidence 88876543221110 11223455666666666555443445444433221 1111 12346789998887
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEe----cCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC-----C
Q 000085 2131 DLGVVVSCSDSSDLLLHSIRRGRLIRRLV----GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP-----L 2201 (2342)
Q Consensus 2131 Dg~lLaSGS~DGtIrIWDLrTGklIrsL~----gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~-----H 2201 (2342)
++.+.+ |+.++.+..+|..+++...... ...+..+...++|.+.+... +-+..|+..+......... .
T Consensus 417 ~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~ 493 (781)
T 3v9f_A 417 EGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLASKKVIHHYDTSNSQLL 493 (781)
T ss_dssp TSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET--TEEEEEESSSSSCCEEECTTTSSCS
T ss_pred CCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCCCeEEecccCcccccc
Confidence 777544 7777789999988876543221 12366777778887655433 5677887764333222111 1
Q ss_pred CCCeEEEEEccCCCEEEEE
Q 000085 2202 SGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2202 s~~ItsLafSPDGk~LaSG 2220 (2342)
...|.++...++|.+.+..
T Consensus 494 ~~~i~~i~~d~~g~lWigt 512 (781)
T 3v9f_A 494 ENFVRSIAQDSEGRFWIGT 512 (781)
T ss_dssp CSCEEEEEECTTCCEEEEE
T ss_pred cceeEEEEEcCCCCEEEEE
Confidence 4679999999999877644
No 254
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.30 E-value=0.021 Score=75.39 Aligned_cols=303 Identities=9% Similarity=-0.022 Sum_probs=147.0
Q ss_pred EEEcCCCCE----EEEEEcCCcEEEEecCCcccceecccCC----CCeEE-EEecCCCCEEEEEe------CCCceEEEe
Q 000085 2002 VSITHDKEI----ITGGHVDGSIKLLTSDGAKTLETASGHC----APVTC-LALSSDSNFLVTGS------QDTTILLWR 2066 (2342)
Q Consensus 2002 VafSpDGkl----LASGS~DGsIrVWDl~tgkll~tL~GHt----~~Vtc-LAfSPDG~~LaSGS------~DGTVrVWD 2066 (2342)
++++|.+.. |+.++.|+.+..+|..+|+.+-...... ..+++ ..+. ++ .++.++ .++.|..+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEE
Confidence 455443333 7778889999999999998875543211 11221 1111 44 455554 389999999
Q ss_pred ccCCccccccccCCCCCCccccccCCCCC--ceeec-CCCccccccCCceEEecCCCCCe-EEEEEecCCCEEEEEeCC-
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSST--PANAS-ADKSRRRRIEGPIHVLRGHHREI-LCCCVSSDLGVVVSCSDS- 2141 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~--Las~s-~D~s~~~~i~~~l~~L~GHs~~V-t~VafSPDg~lLaSGS~D- 2141 (2342)
..+++.+......... ....+.|+... -+.+. ......|.- ... ..+ ...+ ...++.++..+++.++.+
T Consensus 189 ~~TG~~~W~~~~~~~~--~~~~~~p~~~~~~~~~g~~~~g~~tw~g-~~~--~~g-g~~~W~~~a~d~~~g~vy~g~g~~ 262 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPD--KDLLLASDFNIKNPHYGQKGLGTGTWEG-DAW--KIG-GGTNWGWYAYDPGTNLIYFGTGNP 262 (599)
T ss_dssp TTTCCEEEEEESSSCH--HHHTBCTTTTTTCGGGCCTTHHHHTSST-TGG--GGC-CCCCCSCCEEETTTTEEEEECCCC
T ss_pred CCCCcEEEEEcCCCCc--cccccccccccccccccccccccccCCC-cce--ecC-CCccccceeEeCCCCEEEEeCCCC
Confidence 9998765544211110 00000000000 00000 000000100 000 001 1111 134566677777766655
Q ss_pred ---------------CcEEEEECCCCeEEEEEecCC-----------cEEEEEe-cCC---cEEEEEeCCCeEEEEEeC-
Q 000085 2142 ---------------SDLLLHSIRRGRLIRRLVGVD-----------AHAVSLS-SEG---VIMTWNKLQHTLSSFTLN- 2190 (2342)
Q Consensus 2142 ---------------GtIrIWDLrTGklIrsL~gh~-----------vssLSfS-pDG---~IlVwdssdGsI~I~dln- 2190 (2342)
+.|..+|..+|+.+..+.... ...+... .+| .+++....+|.+++++..
T Consensus 263 ~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~t 342 (599)
T 1w6s_A 263 APWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTD 342 (599)
T ss_dssp SCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCC
Confidence 379999999999987776421 1122222 456 345555666766666653
Q ss_pred CceeeeecCCC------------CC--------------------------CeEEEEEccCCCEEEEEeCCCCCCCCCcc
Q 000085 2191 GVLVARAKLPL------------SG--------------------------SIGCMEISLDGHSALIGVNSSSTNNGSYD 2232 (2342)
Q Consensus 2191 G~~L~s~~~~H------------s~--------------------------~ItsLafSPDGk~LaSGS~DGs~d~~i~d 2232 (2342)
|+.+-...... .. .-..++++|+..++++...+.....
T Consensus 343 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~---- 418 (599)
T 1w6s_A 343 GALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW---- 418 (599)
T ss_dssp CCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE----
T ss_pred CCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee----
Confidence 44333222110 00 1135678888888877653211000
Q ss_pred cccccCCCCCCccccccc--cccc-cCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCc
Q 000085 2233 NIQGLNSKQSGTEDFDLA--SDQS-VDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQ 2309 (2342)
Q Consensus 2233 ~Lw~l~~~~~~~iaFspd--~~~s-~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGs 2309 (2342)
.+.... .......+... .... ....+..-.+|.|..||+.+++.+.....+ .++.+-.+...+..++.++.||.
T Consensus 419 ~~~~~~-~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagg~vf~gt~dg~ 495 (599)
T 1w6s_A 419 EPFMLP-YKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGY 495 (599)
T ss_dssp EECCCC-CCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSE
T ss_pred eccccc-ccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcceEecCCEEEEECCCCe
Confidence 000000 00000000000 0000 000001114689999999999998887632 22222223345667888999999
Q ss_pred EEEEeCCCCC
Q 000085 2310 LIVFTDPALS 2319 (2342)
Q Consensus 2310 IrVWDi~sLs 2319 (2342)
|+.||..+.+
T Consensus 496 l~A~D~~tG~ 505 (599)
T 1w6s_A 496 LKARDSDTGD 505 (599)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCC
Confidence 9999976553
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.25 E-value=0.026 Score=74.00 Aligned_cols=41 Identities=12% Similarity=0.023 Sum_probs=29.0
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEE
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaS 2303 (2342)
.|+.|+.+|..+++.+..+..+....-.-+.+..+|+.+++
T Consensus 483 ~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 483 LDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 58999999999999999988554322233445677765443
No 256
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.25 E-value=0.0063 Score=79.42 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=82.1
Q ss_pred CCcEEEEECCCCeEEEEEec-CCcEEEEEecCCcEEEEEeCCC-------------------------------------
Q 000085 2141 SSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQH------------------------------------- 2182 (2342)
Q Consensus 2141 DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~IlVwdssdG------------------------------------- 2182 (2342)
++.+.+.|..+.+.+.++.- .....+++++||++.+....+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred CceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 34667777777776666552 2344566677776665554321
Q ss_pred -eEEEEEeCC---ce-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCC
Q 000085 2183 -TLSSFTLNG---VL-VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDN 2257 (2342)
Q Consensus 2183 -sI~I~dlnG---~~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss 2257 (2342)
.+.+.+... .. +... +-.....++.++|||+++++++.
T Consensus 254 ~~V~VID~~~~~~~~~~~~I--pvg~~PhGv~~sPDGk~v~V~~~----------------------------------- 296 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYI--PIANNPHGCNMAPDKKHLCVAGK----------------------------------- 296 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEE--EEESSCCCEEECTTSSEEEEECT-----------------------------------
T ss_pred CcEEEEeCcccCCceeEEEE--ecCCCceEEEEcCCCCEEEEeCC-----------------------------------
Confidence 234444432 11 1111 12235667899999999987741
Q ss_pred CCccCCCCeEEEEECCCCe------------EEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2258 NRFDFPSPSICFLDLHTLK------------VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2258 ~~ias~DGsIrIWDL~Tgk------------~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
.+.+|.++|+.+.+ .+..+. -+.....++|+++|...++.--|+.|.+|++..
T Consensus 297 -----~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 297 -----LSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp -----TSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred -----CCCeEEEEECcccccccccccCcccceEEEcC--CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 14678888888653 344444 345689999999994334556899999999644
No 257
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.24 E-value=0.094 Score=64.25 Aligned_cols=178 Identities=8% Similarity=-0.031 Sum_probs=105.6
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
|.+..++. +|+.+ ..+.|+..++++......+.+. ..+..++|++.+..| ++-...+.|..+++......
T Consensus 38 C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~------ 108 (349)
T 3v64_C 38 CKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE------ 108 (349)
T ss_dssp EEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------
T ss_pred ccccccCc-eeEee-cccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCce------
Confidence 34444433 33333 3456888888765544444433 347899999765555 45456677877777653110
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCeEEEEE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGV-VVSCSDSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~l-LaSGS~DGtIrIWDLrTGklIrsL 2158 (2342)
..+.........+++.+.+.. .++-...+.|.+.++........+
T Consensus 109 ----------------------------------~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~ 154 (349)
T 3v64_C 109 ----------------------------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL 154 (349)
T ss_dssp ----------------------------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred ----------------------------------EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE
Confidence 001111233467888875544 455566788999998654332222
Q ss_pred ec--CCcEEEEEecCCcEEEE-EeCC-CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2159 VG--VDAHAVSLSSEGVIMTW-NKLQ-HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2159 ~g--h~vssLSfSpDG~IlVw-dssd-GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.. .....++++|++..+.| +... +.|..++.+|..........-...+.+++++++..|..+.
T Consensus 155 ~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 155 WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEE
Confidence 22 34678999986555555 4444 7888888887544433222345678999999888777663
No 258
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.22 E-value=0.0083 Score=81.04 Aligned_cols=114 Identities=11% Similarity=0.142 Sum_probs=71.9
Q ss_pred eeEEEEEc-CCCCEEEEEEc-CC----cEEEEecCCc-ccce-ecccCCCCeEEEEecCCCCEEEEEeCCC-----ceEE
Q 000085 1998 SSAVVSIT-HDKEIITGGHV-DG----SIKLLTSDGA-KTLE-TASGHCAPVTCLALSSDSNFLVTGSQDT-----TILL 2064 (2342)
Q Consensus 1998 Svt~VafS-pDGklLASGS~-DG----sIrVWDl~tg-kll~-tL~GHt~~VtcLAfSPDG~~LaSGS~DG-----TVrV 2064 (2342)
.....+|| |||++||.+.. +| +|+++|+.++ +.+. .+. .....++|+|||+.|+..+.|. .|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 34568999 99998886543 23 4999999998 6332 122 1235689999999888777653 3555
Q ss_pred EeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEec-CCCCCeEEEEEecCCCEEEEEeC---
Q 000085 2065 WRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLR-GHHREILCCCVSSDLGVVVSCSD--- 2140 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~-GHs~~Vt~VafSPDg~lLaSGS~--- 2140 (2342)
|++.++... ....+. .+......+.|+|||++|+..+.
T Consensus 252 ~~lgt~~~~--------------------------------------~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 293 (751)
T 2xe4_A 252 HVMGKLQSE--------------------------------------DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPE 293 (751)
T ss_dssp EETTSCGGG--------------------------------------CEEEEECCCTTCEEEEEECTTSSEEEEEEECSS
T ss_pred EECCCCchh--------------------------------------cEEEEecCCCceEEEEEECCCCCEEEEEecCCC
Confidence 555442100 011111 12234567889999998876553
Q ss_pred CCcEEEEECCCC
Q 000085 2141 SSDLLLHSIRRG 2152 (2342)
Q Consensus 2141 DGtIrIWDLrTG 2152 (2342)
...|+++|+.++
T Consensus 294 ~~~l~~~d~~~~ 305 (751)
T 2xe4_A 294 TAEVHLLDLRKG 305 (751)
T ss_dssp CEEEEEEESSSC
T ss_pred CceEEEEECCCC
Confidence 346888998875
No 259
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.14 E-value=0.04 Score=65.65 Aligned_cols=139 Identities=9% Similarity=-0.024 Sum_probs=83.2
Q ss_pred CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC
Q 000085 2039 APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG 2118 (2342)
Q Consensus 2039 ~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G 2118 (2342)
....+++|+++|+++++-..++.|..||...... ..+ .
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-----------------------------------------~~~-~ 69 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-----------------------------------------IHA-T 69 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-----------------------------------------EEE-E
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-----------------------------------------EEE-e
Confidence 3467899999999777777788888887654210 000 0
Q ss_pred CCCCeEEEEEecCCCEEEEEeCC--CcEEEEECCCCeEEEEEecC---CcEEEEEecCCcEEEEEeCCCeEEEEEeCCc-
Q 000085 2119 HHREILCCCVSSDLGVVVSCSDS--SDLLLHSIRRGRLIRRLVGV---DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV- 2192 (2342)
Q Consensus 2119 Hs~~Vt~VafSPDg~lLaSGS~D--GtIrIWDLrTGklIrsL~gh---~vssLSfSpDG~IlVwdssdGsI~I~dlnG~- 2192 (2342)
....+.+++++++++++++.... ..|..+|..+++........ ....++..+++.+++.+..++.++.++..+.
T Consensus 70 ~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 70 VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCc
Confidence 12357889999999976665433 24777788888764433221 1234455666667777766788887776532
Q ss_pred -eeee--------ecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2193 -LVAR--------AKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2193 -~L~s--------~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.+.. .....-...+.+ ++|+.+|+.+.
T Consensus 150 ~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 150 GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 1110 000111234555 78888777653
No 260
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.12 E-value=0.11 Score=65.72 Aligned_cols=156 Identities=5% Similarity=-0.045 Sum_probs=97.5
Q ss_pred cceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC-CCc---eEEEeccCC
Q 000085 1996 IRSSAVVSITH-DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ-DTT---ILLWRIHRA 2070 (2342)
Q Consensus 1996 I~Svt~VafSp-DGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~-DGT---VrVWDl~tg 2070 (2342)
+.....++++| ++..|......+.|+.+|..+++..... ........++|+++|++|+.+.. ++. ..+|....+
T Consensus 136 ~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 136 FGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp CSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred CCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence 34456789998 3444544444488999998876544333 34456789999999996655543 221 122222221
Q ss_pred ccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEEC
Q 000085 2071 FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSI 2149 (2342)
Q Consensus 2071 ~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDL 2149 (2342)
.. . ....+. ......+++++| ++.++++-..++.|..+|.
T Consensus 215 ~~-----------------------~---------------~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~ 255 (430)
T 3tc9_A 215 GF-----------------------K---------------VITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDF 255 (430)
T ss_dssp TS-----------------------C---------------SEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred ce-----------------------e---------------eeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence 10 0 000111 112356788999 6777777777889999999
Q ss_pred CCCeEEEEEec---CCcEEEEEecCCc-EEEEEeCCCeEEEEEeCC
Q 000085 2150 RRGRLIRRLVG---VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2150 rTGklIrsL~g---h~vssLSfSpDG~-IlVwdssdGsI~I~dlnG 2191 (2342)
.++........ .....++++++|+ +++.+...+.|..++.++
T Consensus 256 ~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 256 TTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 87765332222 2367899999999 667777788999988765
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.11 E-value=0.029 Score=74.08 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=30.0
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEE
Q 000085 2262 FPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLL 2302 (2342)
Q Consensus 2262 s~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~La 2302 (2342)
..|+.++.+|..+|+.+..+..+......-+.+..+|++.+
T Consensus 491 t~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 491 TLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (599)
T ss_dssp CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence 35899999999999999998865443334456667886443
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.09 E-value=0.078 Score=65.90 Aligned_cols=178 Identities=8% Similarity=-0.033 Sum_probs=105.3
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
|.+..+++ +|+.+ ..+.|+.+++.++.....+.+ ...+..++|++.+..| ++-...+.|..++.......
T Consensus 81 C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~------ 151 (386)
T 3v65_B 81 CKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE------ 151 (386)
T ss_dssp EEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE------
T ss_pred ECCccccc-eeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE------
Confidence 34444433 33333 346788899877655444443 3457899999755544 45556677888877653110
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCeEEEEE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGV-VVSCSDSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~l-LaSGS~DGtIrIWDLrTGklIrsL 2158 (2342)
..+.........+++.+.+.. .++-...+.|.+.++........+
T Consensus 152 ----------------------------------~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~ 197 (386)
T 3v65_B 152 ----------------------------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL 197 (386)
T ss_dssp ----------------------------------EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE
T ss_pred ----------------------------------EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee
Confidence 001111123456778865444 455556678888887644322222
Q ss_pred ec--CCcEEEEEecCCcEEEEE-eCC-CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2159 VG--VDAHAVSLSSEGVIMTWN-KLQ-HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2159 ~g--h~vssLSfSpDG~IlVwd-ssd-GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.. .....++++|++..+.|. ... +.|..++.+|..........-...+.|++++++..|+.+.
T Consensus 198 ~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 198 WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE
T ss_pred cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE
Confidence 22 346788999866655555 444 6788888887544433222344678999998888777663
No 263
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.08 E-value=0.027 Score=66.74 Aligned_cols=181 Identities=15% Similarity=0.103 Sum_probs=114.3
Q ss_pred eEEEEecCCCCEEEEEeCCC--ceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC
Q 000085 2041 VTCLALSSDSNFLVTGSQDT--TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG 2118 (2342)
Q Consensus 2041 VtcLAfSPDG~~LaSGS~DG--TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G 2118 (2342)
...+.|+ ++.+.++++.+| .|+++|+.+++..... ..
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~----------------------------------------~l 83 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQI----------------------------------------EL 83 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEE----------------------------------------EC
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEE----------------------------------------ec
Confidence 5788998 677777878776 8999999987543322 10
Q ss_pred CCCCeEEEEEecCCCEEEE-EeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCC-ceeee
Q 000085 2119 HHREILCCCVSSDLGVVVS-CSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLVAR 2196 (2342)
Q Consensus 2119 Hs~~Vt~VafSPDg~lLaS-GS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L~s 2196 (2342)
........+.++++.++. .-.++.+.++|..+++.+.++.... .-..+++||..++....++.+.+++... +.+..
T Consensus 84 -~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 84 -GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT 161 (262)
T ss_dssp -CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEE
T ss_pred -CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEE
Confidence 112222222233445544 4468899999999999999997533 2233445665544443467788888763 34443
Q ss_pred ecCC-CC---CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEEC
Q 000085 2197 AKLP-LS---GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDL 2272 (2342)
Q Consensus 2197 ~~~~-Hs---~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL 2272 (2342)
.... .. ..++.+.|. +|+ +.+.. | .++.|.+.|.
T Consensus 162 I~V~~~g~~~~~lNELe~~-~G~-lyan~-------------w---------------------------~~~~I~vIDp 199 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWV-DGE-IFANV-------------W---------------------------QTNKIVRIDP 199 (262)
T ss_dssp EECEETTEECCCEEEEEEE-TTE-EEEEE-------------T---------------------------TSSEEEEECT
T ss_pred EEeccCCccccccceeEEE-CCE-EEEEE-------------c---------------------------cCCeEEEEEC
Confidence 3322 11 334556765 564 44332 1 1467999999
Q ss_pred CCCeEEEEEecCC-----------CCCeEEEEEecCCCEEEEEeC
Q 000085 2273 HTLKVFHVLKLGE-----------GQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2273 ~Tgk~L~tL~lgH-----------s~~ItsLafSPDG~~LaSGSs 2306 (2342)
.+++++..+...- ....+.|+|+|+++.|++.|.
T Consensus 200 ~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 200 ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9999999887420 235689999999888777764
No 264
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.07 E-value=0.018 Score=68.46 Aligned_cols=171 Identities=12% Similarity=0.101 Sum_probs=109.6
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeE--EEEecCCCCEEE-EEeCCCceEEEeccCCcccccccc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVT--CLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~Vt--cLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
+.|+ ++.+..+.+.+|.|+++|+.+++.++.+ -. .... .+++. ++.|+ ..-.++.+.++|..+.+.+.++.
T Consensus 60 L~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~- 133 (268)
T 3nok_A 60 LVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTR- 133 (268)
T ss_dssp EEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEE-
T ss_pred EEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEe-
Confidence 6666 4667777788899999999999988876 22 2333 35554 44444 44568899999998865433220
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL 2158 (2342)
..++ -+.++ +|++.++.+..++.|.++|..+.+.++++
T Consensus 134 -------------------------------------~~~e---GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I 171 (268)
T 3nok_A 134 -------------------------------------YSGE---GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAV 171 (268)
T ss_dssp -------------------------------------CSSC---CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEE
T ss_pred -------------------------------------CCCc---eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEE
Confidence 0111 12333 56777777777899999999999998887
Q ss_pred ecCC-------cEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCC------------CCCCeEEEEEccCCCEEE
Q 000085 2159 VGVD-------AHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLP------------LSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2159 ~gh~-------vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~------------Hs~~ItsLafSPDGk~La 2218 (2342)
.-.. ..-+.+. +|.+.+-...+..|.+.+.. |+.+...... -..-.+.|+++|+++.|+
T Consensus 172 ~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlf 250 (268)
T 3nok_A 172 QVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIF 250 (268)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEE
T ss_pred EeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEE
Confidence 6421 2334544 77665544456777777764 4444433321 224679999999766555
Q ss_pred EEe
Q 000085 2219 IGV 2221 (2342)
Q Consensus 2219 SGS 2221 (2342)
+.+
T Consensus 251 VTG 253 (268)
T 3nok_A 251 MTG 253 (268)
T ss_dssp EEE
T ss_pred EeC
Confidence 443
No 265
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.07 E-value=0.036 Score=72.79 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=29.7
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEE
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaS 2303 (2342)
.|+.++.||..+|+.+..+..+....-.-+.+..+|+..++
T Consensus 505 ~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 505 GDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence 58999999999999999988543322233667778875443
No 266
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.03 E-value=0.12 Score=65.53 Aligned_cols=154 Identities=10% Similarity=0.069 Sum_probs=93.7
Q ss_pred ceeEEEEEcCC---CCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCC--ceEEEeccCCc
Q 000085 1997 RSSAVVSITHD---KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDT--TILLWRIHRAF 2071 (2342)
Q Consensus 1997 ~Svt~VafSpD---GklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DG--TVrVWDl~tg~ 2071 (2342)
.....++++|+ |+++++- ..+.|+.+|..+++..... +......+++++++|+++++..... .-.++.+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D-~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~- 215 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVG-QRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA- 215 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEEC-BTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG-
T ss_pred CCCceEEEccccCCCEEEEEe-CCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC-
Confidence 34557999985 5554443 3389999999877654433 3445688999999999555543211 1111111100
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLr 2150 (2342)
+... . ...+. .-.....+++++ ++.+.++-..++.|+.+|..
T Consensus 216 ---------------------~~~~--------------~-~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 216 ---------------------SGFT--------------E-RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp ---------------------GTTC--------------C-EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred ---------------------CCee--------------c-ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence 0000 0 00111 123346678898 67766666678899999998
Q ss_pred CCeEEEEEecC----CcEEEEEecCCc-EEEEEeCCCeEEEEEeC
Q 000085 2151 RGRLIRRLVGV----DAHAVSLSSEGV-IMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2151 TGklIrsL~gh----~vssLSfSpDG~-IlVwdssdGsI~I~dln 2190 (2342)
++.....+... ....++++++|. +++.+...+.|..++.+
T Consensus 259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 88763333221 134699999998 67777777889888876
No 267
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.00 E-value=0.26 Score=59.61 Aligned_cols=217 Identities=10% Similarity=-0.035 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc----cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS----GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~----GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
+.+|.+.+++..+++| .+|.| +...+.|+.-..+. .....+.++.+.+ +..++ ++.++.|.. ..+.+..-.
T Consensus 38 ~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~ 112 (327)
T 2xbg_A 38 ILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWS 112 (327)
T ss_dssp EEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCE
T ss_pred EEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCce
Confidence 4557888788877765 46655 33445554322221 1244688999976 44444 455664433 222232222
Q ss_pred cccc--CCCCCCccccccCCCCCceeecCCCccc-cccCCce-EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC-
Q 000085 2075 TGTI--EPSSGMGTPGNSIGSSTPANASADKSRR-RRIEGPI-HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSI- 2149 (2342)
Q Consensus 2075 t~~~--~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i~~~l-~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDL- 2149 (2342)
.... ..+..+..+.+..++..++.+....+.+ .+-...- ....++...+..+++.+++.+++.+...+..+-+|-
T Consensus 113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g 192 (327)
T 2xbg_A 113 QIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG 192 (327)
T ss_dssp ECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT
T ss_pred ECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC
Confidence 2111 1122344455445555444443222211 1111111 122345567899999998887776654433333442
Q ss_pred -CCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCC---CCCCeEEEEEccCCCEEEEEe
Q 000085 2150 -RRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLP---LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2150 -rTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~---Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.+-+.+..........+.++++|.+++.. .+|.+.....+ |..-.....+ +...+.++.+.+++..+++|.
T Consensus 193 G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 193 QTAWEPHNRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp CSSCEEEECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred CCceeECCCCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence 22333322122345677788898876654 45666554333 3322222211 334689999999888888764
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.93 E-value=0.1 Score=68.65 Aligned_cols=54 Identities=19% Similarity=0.043 Sum_probs=39.5
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.+|.|..||+.+++.+.....+ .++..-.....+..+++|+.||.|+.||..+.
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG 517 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSG 517 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CcceEEEEECCCCCEEEEecCC--CCCcccceEeCCCEEEEECCCCcEEEEECCCC
Confidence 3689999999999998887732 22322222335667888999999999997655
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.87 E-value=0.068 Score=63.88 Aligned_cols=94 Identities=13% Similarity=0.072 Sum_probs=60.7
Q ss_pred CeEEEEEecCCCEEEEE-eCCCcEEEEECCCC---e--EEEEEecCCcEEEEEecCCcEEEEEeC----------CCeEE
Q 000085 2122 EILCCCVSSDLGVVVSC-SDSSDLLLHSIRRG---R--LIRRLVGVDAHAVSLSSEGVIMTWNKL----------QHTLS 2185 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSG-S~DGtIrIWDLrTG---k--lIrsL~gh~vssLSfSpDG~IlVwdss----------dGsI~ 2185 (2342)
....++|+++++.++.+ +.++.|.++++... . ....+.+ ...++++++|.+.+.+.. .+.|.
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g--P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~ 263 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN--PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGI 263 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS--EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEE
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC--CCCeEECCCCCEEEEecCcccccccCCCccEEE
Confidence 34678999999865544 56789999998742 2 2222222 667899999998777654 35677
Q ss_pred EEEeCCceeeeecCCC---CCCeEEEEEccCCCEEE
Q 000085 2186 SFTLNGVLVARAKLPL---SGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2186 I~dlnG~~L~s~~~~H---s~~ItsLafSPDGk~La 2218 (2342)
.|+..|..+.....+. ...++++++ .+|+..+
T Consensus 264 ~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v 298 (322)
T 2fp8_A 264 KFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYI 298 (322)
T ss_dssp EECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEE
T ss_pred EECCCCCEEEEEECCCCCccccceEEEE-eCCEEEE
Confidence 8887777665544332 245667766 3554444
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.87 E-value=0.078 Score=70.34 Aligned_cols=223 Identities=9% Similarity=-0.086 Sum_probs=120.5
Q ss_pred EEEEcCCCCEEEEEE-cCCcEEEEecCCcccceecccCCCC-eEEEEecCCCCEEEEEe-CC-----CceEEEeccCCcc
Q 000085 2001 VVSITHDKEIITGGH-VDGSIKLLTSDGAKTLETASGHCAP-VTCLALSSDSNFLVTGS-QD-----TTILLWRIHRAFT 2072 (2342)
Q Consensus 2001 ~VafSpDGklLASGS-~DGsIrVWDl~tgkll~tL~GHt~~-VtcLAfSPDG~~LaSGS-~D-----GTVrVWDl~tg~~ 2072 (2342)
.+++..+|++++.|+ .++.+.+||..+++-...-..+... -.++++.++|+.++.|+ .+ ..+.+||..+..-
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 467789999888887 4568999998876533221111111 12345557899999988 44 5789999987542
Q ss_pred ccccc---cCCCCCCccccccCCCCCceeecCCCcc----------ccccCCc--eEEecCC---------CCCeEEEEE
Q 000085 2073 SRTGT---IEPSSGMGTPGNSIGSSTPANASADKSR----------RRRIEGP--IHVLRGH---------HREILCCCV 2128 (2342)
Q Consensus 2073 i~t~~---~~~~~~V~svs~SpDG~~Las~s~D~s~----------~~~i~~~--l~~L~GH---------s~~Vt~Vaf 2128 (2342)
..... ...........+..++...+.+..++.. .++.... ......+ ...-.++.|
T Consensus 327 ~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~ 406 (656)
T 1k3i_A 327 TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMY 406 (656)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEE
T ss_pred eeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEec
Confidence 21100 0000111112233445544444333211 1111110 0011111 112244444
Q ss_pred ec-CCCEEEEEeCCC-----------cEEEEECCCCeEEEEE--ecC--C-cEEEEEecCCcEEEEEeCC----------
Q 000085 2129 SS-DLGVVVSCSDSS-----------DLLLHSIRRGRLIRRL--VGV--D-AHAVSLSSEGVIMTWNKLQ---------- 2181 (2342)
Q Consensus 2129 SP-Dg~lLaSGS~DG-----------tIrIWDLrTGklIrsL--~gh--~-vssLSfSpDG~IlVwdssd---------- 2181 (2342)
.. ++++++.|+.++ .|.+||..+....... ..+ . ...+++.++|++++.+..+
T Consensus 407 ~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~ 486 (656)
T 1k3i_A 407 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP 486 (656)
T ss_dssp ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred cCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence 43 677888887543 6788898877654433 111 1 3455677899999998643
Q ss_pred -CeEEEEEeCCceeeeec-CC-CCCCeEEEEEccCCCEEEEEeCC
Q 000085 2182 -HTLSSFTLNGVLVARAK-LP-LSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2182 -GsI~I~dlnG~~L~s~~-~~-Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
..+.+|+.....-.... .+ ......+..+.+||+.++.|+..
T Consensus 487 ~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~ 531 (656)
T 1k3i_A 487 VFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGL 531 (656)
T ss_dssp CCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred ccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCC
Confidence 45788887543322111 11 12233455667999999999853
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.85 E-value=0.56 Score=56.40 Aligned_cols=168 Identities=13% Similarity=0.011 Sum_probs=102.1
Q ss_pred CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2017 DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
.+.|+..|+++.+....+.. ...+..++|++++..| ++-..++.|..+++..... +.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~--------------------~~- 66 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG--------------------VS- 66 (316)
T ss_dssp BSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------------------
T ss_pred CCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC--------------------Cc-
Confidence 46789999988765554443 4457899999865544 5555567888888765100 00
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCeEEEEEe--cCCcEEEEEecCC
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLG-VVVSCSDSSDLLLHSIRRGRLIRRLV--GVDAHAVSLSSEG 2172 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~-lLaSGS~DGtIrIWDLrTGklIrsL~--gh~vssLSfSpDG 2172 (2342)
.....+...-.....+++++.+. +.++-...+.|.+.|+........+. ......++++|++
T Consensus 67 ---------------~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~ 131 (316)
T 1ijq_A 67 ---------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH 131 (316)
T ss_dssp ----------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT
T ss_pred ---------------ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCC
Confidence 00001111123456888886554 44555677899999986544333332 2346789999866
Q ss_pred cEEEEEe-CC-CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2173 VIMTWNK-LQ-HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2173 ~IlVwds-sd-GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
..++|.. .. +.|..++.+|..........-...+.+++++++..|+.+.
T Consensus 132 g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 132 GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEE
Confidence 5555554 33 6888888887654433222345678999999888887663
No 272
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.74 E-value=0.099 Score=61.41 Aligned_cols=175 Identities=8% Similarity=0.020 Sum_probs=106.3
Q ss_pred EEEEcCCCCEEEEEEcC--CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEE-EeCCCceEEEeccCCccccccc
Q 000085 2001 VVSITHDKEIITGGHVD--GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVT-GSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~D--GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaS-GS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
-+.|+. +.+..+.+.+ ..|+++|+.+|+.++.+.-... ........+++.|+. .-.++.+.++|..+.+.+.++
T Consensus 25 GL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti- 101 (243)
T 3mbr_X 25 GLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARF- 101 (243)
T ss_dssp EEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE-
T ss_pred cEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEE-
Confidence 367776 5666666655 4899999999999887653322 222222223444544 456889999999886443322
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
... ..=..++ ++++.++.+..++.|.++|..+.+.+++
T Consensus 102 ---------------------------------------~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~ 139 (243)
T 3mbr_X 102 ---------------------------------------RYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGS 139 (243)
T ss_dssp ---------------------------------------ECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEE
T ss_pred ---------------------------------------eCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEE
Confidence 110 1113333 4666666666688999999999999888
Q ss_pred EecC-------CcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCC------------CCCCeEEEEEccCCCEE
Q 000085 2158 LVGV-------DAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLP------------LSGSIGCMEISLDGHSA 2217 (2342)
Q Consensus 2158 L~gh-------~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~------------Hs~~ItsLafSPDGk~L 2217 (2342)
+.-. ...-+.+. +|.+.+-.-.+..|.+.+.. |+.+...... ...-.+.|+++|+++.|
T Consensus 140 I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l 218 (243)
T 3mbr_X 140 IKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL 218 (243)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred EEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence 7642 12233333 66655444455666666664 4444333221 22467999999987777
Q ss_pred EEEe
Q 000085 2218 LIGV 2221 (2342)
Q Consensus 2218 aSGS 2221 (2342)
++.+
T Consensus 219 fVTG 222 (243)
T 3mbr_X 219 FVTG 222 (243)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 6654
No 273
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.69 E-value=0.026 Score=76.18 Aligned_cols=143 Identities=8% Similarity=-0.026 Sum_probs=82.3
Q ss_pred cCCC-CeEEEEec-CCCCEEEEEeC-C----CceEEEeccCC-ccccccccCCCCCCccccccCCCCCceeecCCCcccc
Q 000085 2036 GHCA-PVTCLALS-SDSNFLVTGSQ-D----TTILLWRIHRA-FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRR 2107 (2342)
Q Consensus 2036 GHt~-~VtcLAfS-PDG~~LaSGS~-D----GTVrVWDl~tg-~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~ 2107 (2342)
+|.- .+...+|| |||++|+-+.. + .+|+++|+.++ ..+.
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--------------------------------- 216 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--------------------------------- 216 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---------------------------------
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---------------------------------
Confidence 4543 68889999 99998875432 3 35999998875 3110
Q ss_pred ccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeE--EEEEec--CC-cEEEEEecCCcEEEE
Q 000085 2108 RIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS-----SDLLLHSIRRGRL--IRRLVG--VD-AHAVSLSSEGVIMTW 2177 (2342)
Q Consensus 2108 ~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D-----GtIrIWDLrTGkl--IrsL~g--h~-vssLSfSpDG~IlVw 2177 (2342)
..+ . .....++|+||++.|+....| ..|++|++.+++. ...+.. .. ...+.+|+||+.+++
T Consensus 217 ---~~~---~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~ 287 (751)
T 2xe4_A 217 ---DKV---S---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCI 287 (751)
T ss_dssp ---CCE---E---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEE
T ss_pred ---ccc---c---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEE
Confidence 000 0 012356788888777666654 2588888877641 222221 12 356789999998887
Q ss_pred EeC---CCeEEEEEeCCc--ee--eeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2178 NKL---QHTLSSFTLNGV--LV--ARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2178 dss---dGsI~I~dlnG~--~L--~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
... ...+.++++.+. .. ............++.|+. |..|+..+
T Consensus 288 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t 337 (751)
T 2xe4_A 288 GSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILT 337 (751)
T ss_dssp EEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEE
T ss_pred EecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEe
Confidence 653 235777777642 12 222212344555655543 55554443
No 274
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.66 E-value=0.17 Score=59.47 Aligned_cols=183 Identities=10% Similarity=0.038 Sum_probs=111.2
Q ss_pred CCeEEEEecCCCCEEEEEeCCC--ceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe
Q 000085 2039 APVTCLALSSDSNFLVTGSQDT--TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL 2116 (2342)
Q Consensus 2039 ~~VtcLAfSPDG~~LaSGS~DG--TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L 2116 (2342)
.-...+.|+. +.+..+.+.+| .|++.|+.+++..... .+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~--------------------------------------~l 61 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA--------------------------------------EV 61 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE--------------------------------------EC
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE--------------------------------------eC
Confidence 3467899985 56666767654 8999999987543322 01
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCCCeEEEEEeCC-cee
Q 000085 2117 RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLV 2194 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L 2194 (2342)
..+. ---.+++. .+.+.+..-.++.+.++|..+.+.+.++.... ...+ ++||..++.+..++.+.+++... +.+
T Consensus 62 ~~~~-fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~ 137 (243)
T 3mbr_X 62 PPPY-FGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQV 137 (243)
T ss_dssp CTTC-CEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEE
T ss_pred CCCc-ceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEE
Confidence 1110 00122332 23333445578999999999999999997532 3333 35565444444577888888754 333
Q ss_pred eeecCC-CC---CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2195 ARAKLP-LS---GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2195 ~s~~~~-Hs---~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
.+.... +. ..++.+.+. +|+ +.+.. | .+..|.+.
T Consensus 138 ~~I~V~~~g~~~~~lNeLe~~-~G~-lyanv-------------w---------------------------~s~~I~vI 175 (243)
T 3mbr_X 138 GSIKVTAGGRPLDNLNELEWV-NGE-LLANV-------------W---------------------------LTSRIARI 175 (243)
T ss_dssp EEEECEETTEECCCEEEEEEE-TTE-EEEEE-------------T---------------------------TTTEEEEE
T ss_pred EEEEEccCCcccccceeeEEe-CCE-EEEEE-------------C---------------------------CCCeEEEE
Confidence 333222 11 244556654 454 33332 1 14579999
Q ss_pred ECCCCeEEEEEecC------------CCCCeEEEEEecCCCEEEEEeC
Q 000085 2271 DLHTLKVFHVLKLG------------EGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2271 DL~Tgk~L~tL~lg------------Hs~~ItsLafSPDG~~LaSGSs 2306 (2342)
|..+++++..+..+ .....+.|+++|++..|++.+.
T Consensus 176 Dp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 176 DPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp CTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999988743 1235799999998877776654
No 275
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.52 E-value=0.052 Score=64.49 Aligned_cols=177 Identities=14% Similarity=0.007 Sum_probs=112.2
Q ss_pred eeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCccc
Q 000085 1952 FLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKT 2030 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkl 2030 (2342)
+.|.++....+.+.++.+++++..++...... ++.. .-. .-+++ +++ +.+....++.+.+||..+.+.
T Consensus 60 L~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-------~Fg-eGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 60 LVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGN-------IFA-EGLAS--DGERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp EEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT-------CCE-EEEEE--CSSCEEEEESSSCEEEEEETTTTEE
T ss_pred EEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC-------cce-eEEEE--eCCEEEEEEccCCEEEEEECCcCcE
Confidence 55666777777777778999998875443333 2211 100 11333 444 444555688999999999999
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
+.++..-... +.+ ++|++.|+.+..+++|.++|..+.+...+.. +.
T Consensus 129 ~~ti~~~~eG-wGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~--------------------V~----------- 174 (268)
T 3nok_A 129 ERTTRYSGEG-WGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQ--------------------VK----------- 174 (268)
T ss_dssp EEEEECSSCC-CCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEE--------------------CE-----------
T ss_pred EEEEeCCCce-eEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEE--------------------eC-----------
Confidence 8887643222 233 3578888887778999999988854332220 00
Q ss_pred CceEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---------------CcEEEEEecCCc-
Q 000085 2111 GPIHVLRG-HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV---------------DAHAVSLSSEGV- 2173 (2342)
Q Consensus 2111 ~~l~~L~G-Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh---------------~vssLSfSpDG~- 2173 (2342)
..+ .-..++.+.|. +|...+..-.+..|.+.|.++|+.+..+... -...+++++++.
T Consensus 175 -----~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r 248 (268)
T 3nok_A 175 -----LRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR 248 (268)
T ss_dssp -----ETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred -----CCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence 000 01234556665 6765555557889999999999999998642 136789998654
Q ss_pred EEEEEe
Q 000085 2174 IMTWNK 2179 (2342)
Q Consensus 2174 IlVwds 2179 (2342)
+++.+-
T Consensus 249 lfVTGK 254 (268)
T 3nok_A 249 IFMTGK 254 (268)
T ss_dssp EEEEET
T ss_pred EEEeCC
Confidence 555443
No 276
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.51 E-value=1.2 Score=55.45 Aligned_cols=168 Identities=12% Similarity=-0.004 Sum_probs=104.6
Q ss_pred CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2017 DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
.+.|+..++++......+. ....+..++|++.+..|+ +-...+.|..+++......
T Consensus 91 ~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~---------------------- 147 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------------------- 147 (400)
T ss_dssp TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC----------------------------
T ss_pred cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC----------------------
Confidence 5789999988765444443 345688999998655554 4445677777777542100
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEec--CCcEEEEEecCC
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVG--VDAHAVSLSSEG 2172 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~g--h~vssLSfSpDG 2172 (2342)
......+.........+++.+. +.+.++-...+.|.+.++........+.. .....+++.|.+
T Consensus 148 --------------~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~ 213 (400)
T 3p5b_L 148 --------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH 213 (400)
T ss_dssp --------------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTT
T ss_pred --------------CcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEeccc
Confidence 0001111222345678899874 44555666678999999876544333332 346889999866
Q ss_pred cEEEEEe-C-CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2173 VIMTWNK-L-QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2173 ~IlVwds-s-dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
..++|.. . .+.|..++++|..........-...+.|++++++..|+.+.
T Consensus 214 g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD 264 (400)
T 3p5b_L 214 GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD 264 (400)
T ss_dssp TEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEE
Confidence 6666654 2 36788888887554433322335789999999888887663
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.43 E-value=0.47 Score=58.83 Aligned_cols=173 Identities=11% Similarity=0.016 Sum_probs=101.2
Q ss_pred eeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCE-EEEEeCCCceEEEeccCCccccc
Q 000085 1998 SSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNF-LVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1998 Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~-LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
....++|++.+. ++++-...+.|+.++.+++.....+.........+++.+.+.. .++-...+.|.+.++.....
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~--- 193 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--- 193 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC---
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce---
Confidence 345689997555 5555556788999998876543333323334567888875444 45545556666665543110
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CC-CcEEEEECCCCe
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DS-SDLLLHSIRRGR 2153 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~D-GtIrIWDLrTGk 2153 (2342)
...+...-.....++++|.+..|+.+. .+ +.|...++....
T Consensus 194 -------------------------------------~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 194 -------------------------------------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp -------------------------------------EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred -------------------------------------EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 001112224568899998766555444 44 678888875433
Q ss_pred EEEEEec--CCcEEEEEecCC-cEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEE
Q 000085 2154 LIRRLVG--VDAHAVSLSSEG-VIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEI 2210 (2342)
Q Consensus 2154 lIrsL~g--h~vssLSfSpDG-~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLaf 2210 (2342)
....+.. .....+++++++ .+++.+...+.|..++++|................|++
T Consensus 237 ~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav 296 (386)
T 3v65_B 237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV 296 (386)
T ss_dssp CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE
T ss_pred cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE
Confidence 2222221 235789999754 55555667788999998875433332223345677777
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.38 E-value=0.25 Score=58.43 Aligned_cols=189 Identities=9% Similarity=0.137 Sum_probs=120.9
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecc--cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETAS--GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~--GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
...++++|++. ++++...++.|...|.. ++.++.+. +. ...-.|++.+++.++++.-.++.+.++++........
T Consensus 29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~ 106 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKI 106 (255)
T ss_dssp EEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred cceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeee
Confidence 34589999866 55557778889999988 77777653 33 4577888888888878766778888888765321000
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---CC
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR---RG 2152 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr---TG 2152 (2342)
. ..... ... ...+......++|+|+++.++++.......+|.+. ++
T Consensus 107 ~----------------------------~~~~~--~~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~ 155 (255)
T 3qqz_A 107 L----------------------------KKIKI--PLQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS 155 (255)
T ss_dssp E----------------------------EEEEC--CCS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS
T ss_pred e----------------------------eeecc--ccc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC
Confidence 0 00000 000 01234567899999998877777765555555543 11
Q ss_pred eEEEEEec---------CCcEEEEEecC-CcEEEEEeCCCeEEEEEeCCceeeeecCCC--------CCCeEEEEEccCC
Q 000085 2153 RLIRRLVG---------VDAHAVSLSSE-GVIMTWNKLQHTLSSFTLNGVLVARAKLPL--------SGSIGCMEISLDG 2214 (2342)
Q Consensus 2153 klIrsL~g---------h~vssLSfSpD-G~IlVwdssdGsI~I~dlnG~~L~s~~~~H--------s~~ItsLafSPDG 2214 (2342)
..+..+.. .....+++.|. |++++.+.....+..++.+|+.+....+.. -.....|+|.++|
T Consensus 156 ~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G 235 (255)
T 3qqz_A 156 NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG 235 (255)
T ss_dssp SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTC
T ss_pred CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCC
Confidence 11222211 13567888774 567777777788888888887666554442 1377899999999
Q ss_pred CEEEEE
Q 000085 2215 HSALIG 2220 (2342)
Q Consensus 2215 k~LaSG 2220 (2342)
+..+++
T Consensus 236 ~lyIvs 241 (255)
T 3qqz_A 236 NIYIVS 241 (255)
T ss_dssp CEEEEE
T ss_pred CEEEEc
Confidence 866653
No 279
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.36 E-value=0.45 Score=58.19 Aligned_cols=172 Identities=12% Similarity=0.041 Sum_probs=103.6
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCcccccc
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
...++|++.+. ++.+-...+.|+.++.+++.....+.........+++.+.+ ++.++-...+.|.+.++.....
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---- 150 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---- 150 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC----
T ss_pred eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce----
Confidence 45689997655 45555567889999988765444333333455788888754 4445555667787777654210
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCC-CcEEEEECCCCeE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDS-SDLLLHSIRRGRL 2154 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~D-GtIrIWDLrTGkl 2154 (2342)
...+...-.....++++|.+..++ +-..+ +.|...++... .
T Consensus 151 ------------------------------------~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~ 193 (349)
T 3v64_C 151 ------------------------------------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-G 193 (349)
T ss_dssp ------------------------------------EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-S
T ss_pred ------------------------------------EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-C
Confidence 001112224468899998665554 44444 77888887543 2
Q ss_pred EEEEec---CCcEEEEEecCC-cEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEc
Q 000085 2155 IRRLVG---VDAHAVSLSSEG-VIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEIS 2211 (2342)
Q Consensus 2155 IrsL~g---h~vssLSfSpDG-~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafS 2211 (2342)
...+.. .....+++++++ .+++.+...+.|..++++|................+++.
T Consensus 194 ~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~ 254 (349)
T 3v64_C 194 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF 254 (349)
T ss_dssp CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE
T ss_pred cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE
Confidence 222211 235789999755 555556667889999988754333222234466778873
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.30 E-value=0.79 Score=55.48 Aligned_cols=166 Identities=7% Similarity=-0.016 Sum_probs=98.3
Q ss_pred CCcEEEEecCCccc-ceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCC
Q 000085 2017 DGSIKLLTSDGAKT-LETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2017 DGsIrVWDl~tgkl-l~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~ 2094 (2342)
...|+.+++++... ...+......+..++|.+.+ .+.++-...+.|..++.......
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~--------------------- 70 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------------------- 70 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC---------------------
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce---------------------
Confidence 46788999887531 11121122346788998854 44555556677777777653100
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEEEEec--CCcEEEEEecC
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRGRLIRRLVG--VDAHAVSLSSE 2171 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTGklIrsL~g--h~vssLSfSpD 2171 (2342)
...+...-.....+++.+.+ .+.++-...+.|.++++........+.. .....+++.|.
T Consensus 71 ------------------~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~ 132 (318)
T 3sov_A 71 ------------------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS 132 (318)
T ss_dssp ------------------CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG
T ss_pred ------------------EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC
Confidence 00011112345678888754 4445556678899999864432222211 23678899987
Q ss_pred CcEEEEEe--CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2172 GVIMTWNK--LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2172 G~IlVwds--sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+..+.|.. ..+.|..++.+|..........-...+.+++++++..|+.+.
T Consensus 133 ~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD 184 (318)
T 3sov_A 133 SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWAD 184 (318)
T ss_dssp GTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEE
Confidence 65555554 257888888887543332222234678999999888777663
No 281
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.15 E-value=0.75 Score=59.32 Aligned_cols=160 Identities=6% Similarity=0.043 Sum_probs=96.3
Q ss_pred ceeEEEEEcCC--CCEEEEEEcCCcEEEEecCCcccceeccc---CCCCeEEEEe-------cCCCCEEEEEeCCC-c--
Q 000085 1997 RSSAVVSITHD--KEIITGGHVDGSIKLLTSDGAKTLETASG---HCAPVTCLAL-------SSDSNFLVTGSQDT-T-- 2061 (2342)
Q Consensus 1997 ~Svt~VafSpD--GklLASGS~DGsIrVWDl~tgkll~tL~G---Ht~~VtcLAf-------SPDG~~LaSGS~DG-T-- 2061 (2342)
.....++|+|. ++++++-...+.|++.|..++.....+.. .......++| +++|++|+.+...+ .
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 34567999983 44555555457799999887665543332 2235789999 99999666665543 2
Q ss_pred ----eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEE
Q 000085 2062 ----ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVV 2136 (2342)
Q Consensus 2062 ----VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLa 2136 (2342)
|.+.+... +|.... ..+ ...+..+ . ....++++|+ +.+++
T Consensus 219 ~~~~V~~i~r~~----------------------~G~~~~--~~~-------~~~v~~~-~---~p~giavdp~~g~LYv 263 (496)
T 3kya_A 219 ESPSVYIIKRNA----------------------DGTFDD--RSD-------IQLIAAY-K---QCNGATIHPINGELYF 263 (496)
T ss_dssp GEEEEEEEECCT----------------------TSCCST--TSC-------EEEEEEE-S---CCCCEEECTTTCCEEE
T ss_pred cCceEEEEecCC----------------------CCceee--ccc-------ceeeccC-C---CceEEEEcCCCCeEEE
Confidence 33333211 000000 000 0011111 1 2356788994 55566
Q ss_pred EEeCCCcEEEEECC-------CCeE-----------EEEE-e--c-CCcEEEEEecCCc-EEEEEeCCCeEEEEEeCC
Q 000085 2137 SCSDSSDLLLHSIR-------RGRL-----------IRRL-V--G-VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2137 SGS~DGtIrIWDLr-------TGkl-----------IrsL-~--g-h~vssLSfSpDG~-IlVwdssdGsI~I~dlnG 2191 (2342)
+-..++.|..+|+. ++.. ...+ . . .....++++|+|. +++.+...+.|+.++.++
T Consensus 264 td~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 264 NSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp EETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 67788889999997 5553 2222 1 1 2357899999998 677888888888877765
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=95.98 E-value=2.5 Score=52.69 Aligned_cols=174 Identities=13% Similarity=0.013 Sum_probs=100.4
Q ss_pred ceeEEEEEcCCCCE-EEEEEcCCcEEEEecCCc----ccceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCC
Q 000085 1997 RSSAVVSITHDKEI-ITGGHVDGSIKLLTSDGA----KTLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1997 ~Svt~VafSpDGkl-LASGS~DGsIrVWDl~tg----kll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg 2070 (2342)
.....++|++.+.. +.+-...+.|+.+++++. .....+.........+++.+. +++.++-...+.|.+.++...
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 34566899986654 444456788999988752 222233334456778888874 445555556677777766542
Q ss_pred ccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-C-CCcEEEEE
Q 000085 2071 FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-D-SSDLLLHS 2148 (2342)
Q Consensus 2071 ~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~-DGtIrIWD 2148 (2342)
.. ...+...-.....++++|.+..|+... . .+.|...+
T Consensus 192 ~~----------------------------------------~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~ 231 (400)
T 3p5b_L 192 KR----------------------------------------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 231 (400)
T ss_dssp SE----------------------------------------EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEE
T ss_pred ce----------------------------------------EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEe
Confidence 10 001111233468899998766665444 2 37888888
Q ss_pred CCCCeEEEEEec--CCcEEEEEecCCcEEEE-EeCCCeEEEEEeCCceeeeecCC--CCCCeEEEEE
Q 000085 2149 IRRGRLIRRLVG--VDAHAVSLSSEGVIMTW-NKLQHTLSSFTLNGVLVARAKLP--LSGSIGCMEI 2210 (2342)
Q Consensus 2149 LrTGklIrsL~g--h~vssLSfSpDG~IlVw-dssdGsI~I~dlnG~~L~s~~~~--Hs~~ItsLaf 2210 (2342)
+........+.. .....+++++++..+.| +...+.|..++++|......... .-....++++
T Consensus 232 ~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v 298 (400)
T 3p5b_L 232 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV 298 (400)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE
T ss_pred CCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE
Confidence 754332222222 23678999976655544 56678899999887544332211 2234556666
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=95.92 E-value=0.89 Score=55.05 Aligned_cols=173 Identities=9% Similarity=0.006 Sum_probs=103.3
Q ss_pred eeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccce-ecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCcccc
Q 000085 1998 SSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLE-TASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1998 Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~-tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
....++|.+.+. ++.+-...+.|+.++.+++.... .+...-.....+++.+. +++.++-...+.|.+.++.....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-- 113 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-- 113 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--
Confidence 345688888544 55555667889999987764322 22222345667888864 44555555667788887754210
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCC
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS--DSSDLLLHSIRRG 2152 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS--~DGtIrIWDLrTG 2152 (2342)
...+.........+++.|.+..++.+. ..+.|...++..
T Consensus 114 --------------------------------------~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG- 154 (318)
T 3sov_A 114 --------------------------------------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG- 154 (318)
T ss_dssp --------------------------------------EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-
T ss_pred --------------------------------------EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-
Confidence 000112234567899998766655554 357888888753
Q ss_pred eEEEEEec---CCcEEEEEecCC-cEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEc
Q 000085 2153 RLIRRLVG---VDAHAVSLSSEG-VIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEIS 2211 (2342)
Q Consensus 2153 klIrsL~g---h~vssLSfSpDG-~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafS 2211 (2342)
.....+.. .....+++++++ .+++.+...+.|..++++|................+++.
T Consensus 155 ~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~ 217 (318)
T 3sov_A 155 SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF 217 (318)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE
T ss_pred CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe
Confidence 32233321 235789999855 555556677899999988744333222233456677775
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.84 E-value=0.95 Score=55.87 Aligned_cols=177 Identities=14% Similarity=0.187 Sum_probs=103.4
Q ss_pred CEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCC----CC---EEEEEe-C--CCceEEEeccCCc-cccccc
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD----SN---FLVTGS-Q--DTTILLWRIHRAF-TSRTGT 2077 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPD----G~---~LaSGS-~--DGTVrVWDl~tg~-~i~t~~ 2077 (2342)
.++++....+-+.|||+ +|+.++.+.. +.+..+.+-|+ |+ ++++.. . +++|.++++.... .+...
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i- 116 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM- 116 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC-
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec-
Confidence 34555556788999999 8888888764 45666666653 22 233333 3 5889999875311 01000
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEE--ecC-CC-EEEEEeCCCcEEEEECC---
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCV--SSD-LG-VVVSCSDSSDLLLHSIR--- 2150 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~Vaf--SPD-g~-lLaSGS~DGtIrIWDLr--- 2150 (2342)
.. ...++ ..-...+..+|+ ++. +. +++....+|.+..|++.
T Consensus 117 -----------------------~~------~~~pv---~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~ 164 (355)
T 3amr_A 117 -----------------------TD------PDHPI---ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADK 164 (355)
T ss_dssp -----------------------SC------TTSCE---ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECT
T ss_pred -----------------------cc------cccCc---CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCC
Confidence 00 00000 000134555666 564 43 67788888999999882
Q ss_pred ----CCeEEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeC------CceeeeecCC-CCCCeEEEEE--ccCCC-
Q 000085 2151 ----RGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLN------GVLVARAKLP-LSGSIGCMEI--SLDGH- 2215 (2342)
Q Consensus 2151 ----TGklIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dln------G~~L~s~~~~-Hs~~ItsLaf--SPDGk- 2215 (2342)
+++.+++|... +...+.+.+....++.+..+.-|..|+.. +..+.....+ ....+..|++ .++|+
T Consensus 165 ~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~g 244 (355)
T 3amr_A 165 NGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKG 244 (355)
T ss_dssp TSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCE
T ss_pred CCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCE
Confidence 44667887654 46677777766666666666556666643 2233322222 2347888888 56666
Q ss_pred EEEEEe
Q 000085 2216 SALIGV 2221 (2342)
Q Consensus 2216 ~LaSGS 2221 (2342)
||++.+
T Consensus 245 yLivSs 250 (355)
T 3amr_A 245 YLMASS 250 (355)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 677665
No 285
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.75 E-value=0.17 Score=63.81 Aligned_cols=154 Identities=6% Similarity=0.028 Sum_probs=95.8
Q ss_pred CeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCcEEEEEecCCc-EEEEEeCCC----eEEEEEeCCcee
Q 000085 2122 EILCCCVSS-DLGVVVSCSDSSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGV-IMTWNKLQH----TLSSFTLNGVLV 2194 (2342)
Q Consensus 2122 ~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~-IlVwdssdG----sI~I~dlnG~~L 2194 (2342)
....++|+| +...|+.+...+.|+.+|+.++........ .....++++++|. +++.+...+ .+..++..+...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 457889998 455666666558899999987765544432 3367899999999 555554332 344444444322
Q ss_pred eeecCCCCCCeEEEEEcc-CCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC
Q 000085 2195 ARAKLPLSGSIGCMEISL-DGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH 2273 (2342)
Q Consensus 2195 ~s~~~~Hs~~ItsLafSP-DGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~ 2273 (2342)
.............++++| +|..+++-. .++.|..+|..
T Consensus 218 ~~~~l~~~~~p~giavdp~~g~lyv~d~-----------------------------------------~~~~V~~~~~~ 256 (430)
T 3tc9_A 218 VITELTKGQNCNGAETHPINGELYFNSW-----------------------------------------NAGQVFRYDFT 256 (430)
T ss_dssp SEEEEEECSSCCCEEECTTTCCEEEEET-----------------------------------------TTTEEEEEETT
T ss_pred eeeeeccCCCceEEEEeCCCCEEEEEEC-----------------------------------------CCCEEEEEECC
Confidence 100111123456788888 555444321 14678889988
Q ss_pred CCeEEEEEecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCC
Q 000085 2274 TLKVFHVLKLGEGQDITALALNKDNTNLLVS-TADKQLIVFTDP 2316 (2342)
Q Consensus 2274 Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG-SsDGsIrVWDi~ 2316 (2342)
++........+.....+.++|+|+|++|+.+ ...+.|.+++..
T Consensus 257 ~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 257 TQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 7765333332233457899999999966555 567889998854
No 286
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.71 E-value=1.6 Score=52.47 Aligned_cols=179 Identities=13% Similarity=0.012 Sum_probs=102.8
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCC---cccce-ecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCcc
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDG---AKTLE-TASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~t---gkll~-tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
...++|++++. ++++-..++.|+.+++++ +.... .+...-.....+++.+.+ +..++-...+.|.+.+......
T Consensus 32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~ 111 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR 111 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE
T ss_pred eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce
Confidence 45688998665 555555678999999876 12222 232223456788888654 4445556677888887654210
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-C-CcEEEEECC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-S-SDLLLHSIR 2150 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-D-GtIrIWDLr 2150 (2342)
. ..+.........++++|.+..++.+.. . +.|...++.
T Consensus 112 -~---------------------------------------~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d 151 (316)
T 1ijq_A 112 -K---------------------------------------TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 151 (316)
T ss_dssp -E---------------------------------------EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred -E---------------------------------------EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence 0 001112235678999987665554443 3 688888874
Q ss_pred CCeEEEEEec---CCcEEEEEecCCc-EEEEEeCCCeEEEEEeCCceeeeecCC--CCCCeEEEEEccCCCEEEEE
Q 000085 2151 RGRLIRRLVG---VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVLVARAKLP--LSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2151 TGklIrsL~g---h~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~L~s~~~~--Hs~~ItsLafSPDGk~LaSG 2220 (2342)
|.....+.. .....+++++++. +++.+...+.|..++.+|......... .......+++. +..++..
T Consensus 152 -G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~ 224 (316)
T 1ijq_A 152 -GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT 224 (316)
T ss_dssp -SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE
T ss_pred -CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEE
Confidence 443343322 2367899998655 455556668999999987443322111 22346677774 3344433
No 287
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=95.67 E-value=1.8 Score=51.13 Aligned_cols=200 Identities=15% Similarity=0.174 Sum_probs=120.5
Q ss_pred ecccCCCCeEEEEecCCCCEEEE-EeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCC
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVT-GSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG 2111 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaS-GS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~ 2111 (2342)
.+.|-.+.+..++|+|+++.|++ ...++.|...|.. +......
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i----------------------------------- 64 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI----------------------------------- 64 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE-----------------------------------
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE-----------------------------------
Confidence 34555567999999998776655 5667777777765 3222111
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---EEEEEec--------CCcEEEEEecCCcEEEEEeC
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR---LIRRLVG--------VDAHAVSLSSEGVIMTWNKL 2180 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk---lIrsL~g--------h~vssLSfSpDG~IlVwdss 2180 (2342)
.+.+. ...-.+++.+++.++++.-.++.+.++++.... .+..... .+...+++++++..++....
T Consensus 65 ---~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E 140 (255)
T 3qqz_A 65 ---PLDFV-KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE 140 (255)
T ss_dssp ---ECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE
T ss_pred ---ecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC
Confidence 11111 346677888888877776677889998876543 2233321 12378999998854444444
Q ss_pred CCeEEEEEeCCc----eeeeec------CCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccc
Q 000085 2181 QHTLSSFTLNGV----LVARAK------LPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLA 2250 (2342)
Q Consensus 2181 dGsI~I~dlnG~----~L~s~~------~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd 2250 (2342)
.....+|.++|. .+.... ..+...+.+++++|....+++-+..
T Consensus 141 ~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~--------------------------- 193 (255)
T 3qqz_A 141 KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHE--------------------------- 193 (255)
T ss_dssp SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETT---------------------------
T ss_pred cCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECC---------------------------
Confidence 444455655431 111110 0134467889999876666655421
Q ss_pred cccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC--------CCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2251 SDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG--------QDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2251 ~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs--------~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
++.|.++|.. ++++..+.+..+ ..--.|+|.++|+ |+..++.+.+++|.
T Consensus 194 -------------s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 194 -------------SRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp -------------TTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred -------------CCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 3456667754 445555543321 2468899999998 55558888787776
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.59 E-value=2.8 Score=57.18 Aligned_cols=168 Identities=12% Similarity=-0.005 Sum_probs=103.1
Q ss_pred CCcEEEEecCCcccceecccCCCCeEEEEecCCCC-EEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2017 DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSN-FLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
...|+..++........+. ....+..|+|.+.+. ++++-...+.|+.+++......
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---------------------- 459 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------------------- 459 (791)
T ss_dssp BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------------------
T ss_pred ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC----------------------
Confidence 4678888887665444444 345678999988544 4455555677877777642100
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEec--CCcEEEEEecCC
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRRLVG--VDAHAVSLSSEG 2172 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrsL~g--h~vssLSfSpDG 2172 (2342)
......+.........|++.+.++.| ++-...+.|.+.++........+.. .....|++.+.+
T Consensus 460 --------------~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~ 525 (791)
T 3m0c_C 460 --------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH 525 (791)
T ss_dssp ----------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT
T ss_pred --------------cceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCC
Confidence 00011122223456678888776544 5556678999999865443333322 346889999976
Q ss_pred cEEEEEe-CC-CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2173 VIMTWNK-LQ-HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2173 ~IlVwds-sd-GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
..++|.. .. +.|...+++|..........-...+.|++++.+..|+.+.
T Consensus 526 g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD 576 (791)
T 3m0c_C 526 GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD 576 (791)
T ss_dssp TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEe
Confidence 5555553 33 6788888888655544433346789999998888777663
No 289
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.42 E-value=0.58 Score=57.31 Aligned_cols=147 Identities=5% Similarity=0.003 Sum_probs=95.3
Q ss_pred eEEEEecCCCCEEEEEe-CCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCC
Q 000085 2041 VTCLALSSDSNFLVTGS-QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH 2119 (2342)
Q Consensus 2041 VtcLAfSPDG~~LaSGS-~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH 2119 (2342)
-.|++|.+....|+.++ ..++|..||...+....... ..+ . ..+.
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~----~~~---s---------------------------~~g~ 60 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVI----DGA---S---------------------------SNGD 60 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECC----TTT---C---------------------------CSSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEec----CCc---c---------------------------ccCC
Confidence 35788987656666555 78999999987532111000 000 0 0000
Q ss_pred -CCCeEEEEE---ecCCCEEEEEe-------------CCCcEEEEECC---CCeEEEEEecC---------------CcE
Q 000085 2120 -HREILCCCV---SSDLGVVVSCS-------------DSSDLLLHSIR---RGRLIRRLVGV---------------DAH 2164 (2342)
Q Consensus 2120 -s~~Vt~Vaf---SPDg~lLaSGS-------------~DGtIrIWDLr---TGklIrsL~gh---------------~vs 2164 (2342)
...+..+.| .++++++++.. .+..|..+|+. +++.+...... ...
T Consensus 61 ~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~n 140 (334)
T 2p9w_A 61 GEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVV 140 (334)
T ss_dssp CSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEE
T ss_pred CcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCc
Confidence 112467888 57766666433 26789999999 88877665421 256
Q ss_pred EEEEecCCcEEEEEeCC-CeEEEEEeCCceeeeecCC-----CCCCeEEEEEccCCCEEEEEe
Q 000085 2165 AVSLSSEGVIMTWNKLQ-HTLSSFTLNGVLVARAKLP-----LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2165 sLSfSpDG~IlVwdssd-GsI~I~dlnG~~L~s~~~~-----Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.+++.++|+.++.+... +.|..++.+|..+...... .....+.|+++|+|..|++..
T Consensus 141 DvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~ 203 (334)
T 2p9w_A 141 QSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG 203 (334)
T ss_dssp EEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES
T ss_pred eeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEc
Confidence 89999999999999888 8888888877643322111 223477999999999998774
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.28 E-value=2.1 Score=58.28 Aligned_cols=180 Identities=12% Similarity=-0.032 Sum_probs=103.8
Q ss_pred eeEEEEEcCCCC-EEEEEEcCCcEEEEecCCc----ccceecccCCCCeEEEEecCCCC-EEEEEeCCCceEEEeccCCc
Q 000085 1998 SSAVVSITHDKE-IITGGHVDGSIKLLTSDGA----KTLETASGHCAPVTCLALSSDSN-FLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 1998 Svt~VafSpDGk-lLASGS~DGsIrVWDl~tg----kll~tL~GHt~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
....++|++.+. ++++-...+.|+.+++... .....+.........|++.+.++ +.++-+..+.|.+.++....
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~ 504 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 504 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe
Confidence 345688888554 5555556678998888753 22233333445567888887664 44555566778777776421
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-C-CcEEEEEC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-S-SDLLLHSI 2149 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-D-GtIrIWDL 2149 (2342)
. ...+...-.....|+++|....|+.... + +.|.+.++
T Consensus 505 ~----------------------------------------~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 505 R----------------------------------------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp E----------------------------------------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred E----------------------------------------EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 0 0011122345789999997666655543 2 67888888
Q ss_pred CCCeEEEEEec---CCcEEEEEecCCc-EEEEEeCCCeEEEEEeCCceeeeecCC--CCCCeEEEEEccCCCEEEEE
Q 000085 2150 RRGRLIRRLVG---VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVLVARAKLP--LSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2150 rTGklIrsL~g---h~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~L~s~~~~--Hs~~ItsLafSPDGk~LaSG 2220 (2342)
... ....+.. .....|++++.+. +++.+...+.|..++++|......... .-....+|++. +.+|+..
T Consensus 545 dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwt 618 (791)
T 3m0c_C 545 NGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT 618 (791)
T ss_dssp TSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE
T ss_pred CCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEE
Confidence 543 3333332 2367899996554 555556667899999887554433221 12234566653 3455544
No 291
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.19 E-value=0.71 Score=58.35 Aligned_cols=190 Identities=11% Similarity=0.040 Sum_probs=108.7
Q ss_pred ceeEEEEEcCCCCEEEEEEcC---Cc-EEEEecCCcccc-eecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCC
Q 000085 1997 RSSAVVSITHDKEIITGGHVD---GS-IKLLTSDGAKTL-ETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~D---Gs-IrVWDl~tgkll-~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
.....++++++|+++++.... .. +...+...+... ..+. .-.....++++| +|.+.++-..++.|..+|..++
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 345679999999955554321 11 333333222110 1111 223345688999 6776666667788999988765
Q ss_pred cccccc-ccCCCCCCccccccCCCCCceeecCCC--ccccccC---Cc---eEEecCC---------------CCCeEEE
Q 000085 2071 FTSRTG-TIEPSSGMGTPGNSIGSSTPANASADK--SRRRRIE---GP---IHVLRGH---------------HREILCC 2126 (2342)
Q Consensus 2071 ~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~--s~~~~i~---~~---l~~L~GH---------------s~~Vt~V 2126 (2342)
...... ..........++++++++.+....... +.+++.. .. ...+.+. -.....+
T Consensus 261 ~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gi 340 (433)
T 4hw6_A 261 TLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQG 340 (433)
T ss_dssp CEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEE
T ss_pred eEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccE
Confidence 431222 111112223588999998554443332 2222211 10 1122221 1235678
Q ss_pred EE---------ecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--------------------CcEEEEEe-cCCcEEE
Q 000085 2127 CV---------SSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV--------------------DAHAVSLS-SEGVIMT 2176 (2342)
Q Consensus 2127 af---------SPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh--------------------~vssLSfS-pDG~IlV 2176 (2342)
++ .+++.+.++-...+.|+.++. +|.. .++.+. ....++++ ++|.+++
T Consensus 341 av~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyV 418 (433)
T 4hw6_A 341 IFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYI 418 (433)
T ss_dssp EEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEE
T ss_pred EEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEE
Confidence 88 677777777777788999985 5643 333221 14678999 8899999
Q ss_pred EEeCCCeEEEEEe
Q 000085 2177 WNKLQHTLSSFTL 2189 (2342)
Q Consensus 2177 wdssdGsI~I~dl 2189 (2342)
.+..++.|+.+++
T Consensus 419 aD~~n~rIr~i~~ 431 (433)
T 4hw6_A 419 GDCDNHRVRKIAP 431 (433)
T ss_dssp EEGGGTEEEEEEE
T ss_pred EeCCCCEEEEEec
Confidence 9988888888765
No 292
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.16 E-value=1 Score=54.42 Aligned_cols=176 Identities=9% Similarity=-0.065 Sum_probs=85.1
Q ss_pred CCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc---CCCCCCccccccCCCCCceeecCCCcccc-ccCCceE
Q 000085 2039 APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI---EPSSGMGTPGNSIGSSTPANASADKSRRR-RIEGPIH 2114 (2342)
Q Consensus 2039 ~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~---~~~~~V~svs~SpDG~~Las~s~D~s~~~-~i~~~l~ 2114 (2342)
..+.+|.|.+++..++ ++.++.| ++..+.+..-..... .....+..+.+.+ +..++++....+.+- +-.+.-.
T Consensus 36 ~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~S~DgG~tW~ 112 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLHTTDGGQSWS 112 (327)
T ss_dssp SCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEEESSTTSSCE
T ss_pred CcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEEECCCCCCce
Confidence 4688888887777676 4556654 223333322111111 1122345555554 333333222111110 0011111
Q ss_pred Ee---cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe-c--CCcEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2115 VL---RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV-G--VDAHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2115 ~L---~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~-g--h~vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
.+ ..+...+..+.+.+++..++.+ .+|.|.. ....|+.-..+. . .....+++.+++.+++.+.. +.+..-.
T Consensus 113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~ 189 (327)
T 2xbg_A 113 QIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR-GSFYSTW 189 (327)
T ss_dssp ECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT-SSEEEEE
T ss_pred ECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC-CcEEEEe
Confidence 11 1233457788887777666555 4565533 222333222222 1 23567788889888776643 4433322
Q ss_pred eC-CceeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2189 LN-GVLVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2189 ln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
-. |..-..........+..+.+.+++..++++
T Consensus 190 d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~ 222 (327)
T 2xbg_A 190 EPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIV 222 (327)
T ss_dssp CTTCSSCEEEECCSSSCEEEEEECTTSCEEEEE
T ss_pred CCCCCceeECCCCCCCccceeEECCCCCEEEEe
Confidence 12 322222222355678899999999877655
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.05 E-value=8.7 Score=50.85 Aligned_cols=100 Identities=6% Similarity=-0.083 Sum_probs=64.0
Q ss_pred CCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEec--CCcEEEEEec-CCcEEEEEeCCCeEEEEEeCCceeee
Q 000085 2121 REILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRRLVG--VDAHAVSLSS-EGVIMTWNKLQHTLSSFTLNGVLVAR 2196 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrsL~g--h~vssLSfSp-DG~IlVwdssdGsI~I~dlnG~~L~s 2196 (2342)
..+.+++|++.+..| ++-...+.|+.+++........+.. .....+++.. .+++++.+...+.|.+.+++|.....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 346778888755444 4444577888888765433222222 2356788986 55566666777899999998864433
Q ss_pred ecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2197 AKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2197 ~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
.....-....++++.|...+|+..
T Consensus 429 l~~~~l~~P~~iavdp~~G~ly~t 452 (619)
T 3s94_A 429 LISEDLEEPRAIVLDPMVGYMYWT 452 (619)
T ss_dssp EECTTCCSEEEEEEETTTTEEEEE
T ss_pred EEECCCCCeeeEEEEcCCCcEEEe
Confidence 332234678999999975555544
No 294
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.98 E-value=2 Score=52.53 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=42.3
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCccc--ceec---ccCCCCeEEEEecCC---CCEEE-EEeCC-----CceEE
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKT--LETA---SGHCAPVTCLALSSD---SNFLV-TGSQD-----TTILL 2064 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkl--l~tL---~GHt~~VtcLAfSPD---G~~La-SGS~D-----GTVrV 2064 (2342)
...++|.|||+++++ ..+|.|++++ +++. +..+ .........|+|+|+ +..|+ +-+.+ +.|..
T Consensus 33 P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp EEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred ceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 456999999996665 4679999998 3332 1111 122346789999998 44444 43332 55666
Q ss_pred EeccC
Q 000085 2065 WRIHR 2069 (2342)
Q Consensus 2065 WDl~t 2069 (2342)
|+...
T Consensus 110 ~~~~~ 114 (352)
T 2ism_A 110 LRHLG 114 (352)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 66653
No 295
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.29 E-value=3.4 Score=50.60 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=32.3
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCCcc--cceec----ccCCCCeEEEEecCC
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDGAK--TLETA----SGHCAPVTCLALSSD 2049 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~tgk--ll~tL----~GHt~~VtcLAfSPD 2049 (2342)
...++|.|+|+ ++++ ...|.|++++.+... .+..+ .........++|+|+
T Consensus 20 P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 20 PWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp EEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred cEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCC
Confidence 45699999999 6655 467999999854321 11111 112345689999996
No 296
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.14 E-value=15 Score=45.19 Aligned_cols=231 Identities=13% Similarity=0.129 Sum_probs=137.7
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~ 2081 (2342)
.-.+|..++||--. ..+++|+|+++.+.++...-. ..|.--.|-.+. .|+-.+ +..|.-|++....
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s---------- 137 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGES---------- 137 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSS-EEEEEE-SSEEEEEESSTTC----------
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCC-eEEEEc-CCcEEEEcccCCC----------
Confidence 44588888888765 789999999998877776643 567777886443 333332 5689999986521
Q ss_pred CCCccccccCCCCCceeecCCCccccccCCceEEecCC----CCCeEEEEEecCCCEEEEEeC-------CCcEEEEECC
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH----HREILCCCVSSDLGVVVSCSD-------SSDLLLHSIR 2150 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH----s~~Vt~VafSPDg~lLaSGS~-------DGtIrIWDLr 2150 (2342)
.|...+.-| ...|..-..+++.++++..+- .|.+.+|..+
T Consensus 138 -----------------------------~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 188 (365)
T 2xzh_A 138 -----------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 188 (365)
T ss_dssp -----------------------------CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred -----------------------------CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec
Confidence 111222221 234555555666666543321 3678888875
Q ss_pred CCeEEEEEecCCcEEEEEecCCc-----EEEEEeC---CCeEEEEEeCCce---------eeeecCC---CCCCeEEEEE
Q 000085 2151 RGRLIRRLVGVDAHAVSLSSEGV-----IMTWNKL---QHTLSSFTLNGVL---------VARAKLP---LSGSIGCMEI 2210 (2342)
Q Consensus 2151 TGklIrsL~gh~vssLSfSpDG~-----IlVwdss---dGsI~I~dlnG~~---------L~s~~~~---Hs~~ItsLaf 2210 (2342)
.+ .-+.+++|......+-.+|. ++.+..+ .+++++.++.... .....++ -.+-..++.+
T Consensus 189 r~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqv 267 (365)
T 2xzh_A 189 RK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 267 (365)
T ss_dssp TT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEE
T ss_pred cc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEe
Confidence 44 55667777766666655543 3333332 2577777763210 0001111 1222334444
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeE
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDIT 2290 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~It 2290 (2342)
|+....+..-+ .-|-|++||+.|+.+++.-. -....|.
T Consensus 268 s~kygviyviT-----------------------------------------K~G~ihlyDleTgt~i~~nr-IS~d~iF 305 (365)
T 2xzh_A 268 SEKHDVVFLIT-----------------------------------------KYGYIHLYDLETGTCIYMNR-ISGETIF 305 (365)
T ss_dssp ETTTTEEEEEE-----------------------------------------TTSEEEEEETTTCCEEEEEE-CCSSCEE
T ss_pred cccCCEEEEEe-----------------------------------------CCcEEEEEEcccCcEEEEec-cCCCceE
Confidence 43333333222 24789999999999999887 4456676
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2291 ALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2291 sLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.-+-+.+..-++.....|.|.--.++.-
T Consensus 306 ~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 306 VTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 6666665556777778998888775544
No 297
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.08 E-value=13 Score=52.67 Aligned_cols=303 Identities=15% Similarity=0.077 Sum_probs=143.8
Q ss_pred CEEEEEEcCCcEEEEecCCcccceec-ccCCCCeEEEEecCC------CCEEEEEeC-CCceEEEeccCCccccccccCC
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKTLETA-SGHCAPVTCLALSSD------SNFLVTGSQ-DTTILLWRIHRAFTSRTGTIEP 2080 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkll~tL-~GHt~~VtcLAfSPD------G~~LaSGS~-DGTVrVWDl~tg~~i~t~~~~~ 2080 (2342)
..++.++ ++.+.++.++.++....- ..-.+.|+|+++.+. +.+++.|.+ |++|+|+++.+...........
T Consensus 524 ~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~ 602 (1158)
T 3ei3_A 524 SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG 602 (1158)
T ss_dssp SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS
T ss_pred CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC
Confidence 3455554 677888877655322111 112457999999863 479999997 9999999998644333221111
Q ss_pred CCCCcccccc--CCCCCceeecCCCccc---ccc-CCc----eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2081 SSGMGTPGNS--IGSSTPANASADKSRR---RRI-EGP----IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2081 ~~~V~svs~S--pDG~~Las~s~D~s~~---~~i-~~~----l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
......+.+. .+..++..+..++... ++. ... ...+-| ..++.-..|...+..-+-+..+....++.-+
T Consensus 603 ~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~ 681 (1158)
T 3ei3_A 603 EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN 681 (1158)
T ss_dssp SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS
T ss_pred CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC
Confidence 1111111111 1223445555555422 111 011 112223 3355544454444433333434555555433
Q ss_pred CCeEE-EEEecCCc-EEEEEecCC--cEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2151 RGRLI-RRLVGVDA-HAVSLSSEG--VIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2151 TGklI-rsL~gh~v-ssLSfSpDG--~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
++.. ..+....+ ....|+.+. .-++. ..++.+++..++. ..+.....+-...+..++++|+.+.++.+..+..
T Consensus 682 -~~l~~s~l~~~~v~~~~~F~se~~~~g~v~-~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~ 759 (1158)
T 3ei3_A 682 -HKLVFSNVNLKEVNYMCPLNSDGYPDSLAL-ANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIE 759 (1158)
T ss_dssp -SSEEEEEBSSSCCCEEEEECCSSSTTEEEE-ECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEE
T ss_pred -CceEEeccChHHhceEeccCcccCCCcEEE-EcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEecc
Confidence 3322 22222222 334454322 12222 2234577777642 1122222335578899999998887666542110
Q ss_pred ---CCCCCccccc-----ccC-CCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe-
Q 000085 2226 ---TNNGSYDNIQ-----GLN-SKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN- 2295 (2342)
Q Consensus 2226 ---~d~~i~d~Lw-----~l~-~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS- 2295 (2342)
.+........ ... ............... .........-++|++.|-.+.+.+..+.......+.+++..
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~ 838 (1158)
T 3ei3_A 760 VQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPH-ETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 838 (1158)
T ss_dssp EECSSSSEEESSCCHHHHCSEEEECCCCCC-----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEEC
T ss_pred ccccccccchhhhhhhhhhhhhcccccccccccccCc-hhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEE
Confidence 0000000000 000 000000000000000 00000001235799999999999988887777777777643
Q ss_pred --cC-CCEEEEEe----------CCCcEEEEeCC
Q 000085 2296 --KD-NTNLLVST----------ADKQLIVFTDP 2316 (2342)
Q Consensus 2296 --PD-G~~LaSGS----------sDGsIrVWDi~ 2316 (2342)
.+ ..+|++|+ ..|.|++|++.
T Consensus 839 ~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 839 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp CTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred EccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence 22 47888887 34789999965
No 298
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=93.94 E-value=4.3 Score=53.73 Aligned_cols=166 Identities=7% Similarity=-0.006 Sum_probs=97.1
Q ss_pred cCCcEEEEecCCcc-cceecccCCCCeEEEEecCCCCEEEEE-eCCCceEEEeccCCccccccccCCCCCCccccccCCC
Q 000085 2016 VDGSIKLLTSDGAK-TLETASGHCAPVTCLALSSDSNFLVTG-SQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS 2093 (2342)
Q Consensus 2016 ~DGsIrVWDl~tgk-ll~tL~GHt~~VtcLAfSPDG~~LaSG-S~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG 2093 (2342)
..+.|++.+++... ....+...-..+..++|++.+..|+-+ ...+.|..+++.....
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~--------------------- 74 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--------------------- 74 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc---------------------
Confidence 46778888887643 222222234457899999866655544 4456677776654210
Q ss_pred CCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCeEEEEEe---cCCcEEEEEe
Q 000085 2094 STPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGV-VVSCSDSSDLLLHSIRRGRLIRRLV---GVDAHAVSLS 2169 (2342)
Q Consensus 2094 ~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~l-LaSGS~DGtIrIWDLrTGklIrsL~---gh~vssLSfS 2169 (2342)
....+...-.....+++.+.++. .++-...+.|.+.++.... .+.+. ......+++.
T Consensus 75 ------------------~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~Iavd 135 (619)
T 3s94_A 75 ------------------VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALD 135 (619)
T ss_dssp ------------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCCEEEE
T ss_pred ------------------eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-EEEEEeCCCCCCceEEEe
Confidence 00111112245788999986554 4555567899999986543 33332 1346789999
Q ss_pred cCCcEEEEEe-C-CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2170 SEGVIMTWNK-L-QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2170 pDG~IlVwds-s-dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
|.+..+.|.. . .+.|...+++|..........-...+.+++++++..|+.+.
T Consensus 136 p~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 136 PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred cCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEe
Confidence 8755555543 2 46788788887544433322345789999999888777663
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=93.86 E-value=2.1 Score=52.49 Aligned_cols=191 Identities=7% Similarity=0.097 Sum_probs=111.3
Q ss_pred EEEEcCCCCEEEEEE-cCCcEEEEecCCccccee-ccc----CC--CCeEEEEe---cCCCCEEEEEe------------
Q 000085 2001 VVSITHDKEIITGGH-VDGSIKLLTSDGAKTLET-ASG----HC--APVTCLAL---SSDSNFLVTGS------------ 2057 (2342)
Q Consensus 2001 ~VafSpDGklLASGS-~DGsIrVWDl~tgkll~t-L~G----Ht--~~VtcLAf---SPDG~~LaSGS------------ 2057 (2342)
++.|.+....+..++ ..++|..|+..++..... +.+ .. ..+..|.| .|+++++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 478877555444444 899999999986643332 222 11 13579999 68877777543
Q ss_pred -CCCceEEEecc---CCccccccc-c----C-------CCCCCccccccCCCCCceeecCC--CccccccCC-ceEEec-
Q 000085 2058 -QDTTILLWRIH---RAFTSRTGT-I----E-------PSSGMGTPGNSIGSSTPANASAD--KSRRRRIEG-PIHVLR- 2117 (2342)
Q Consensus 2058 -~DGTVrVWDl~---tg~~i~t~~-~----~-------~~~~V~svs~SpDG~~Las~s~D--~s~~~~i~~-~l~~L~- 2117 (2342)
.+..|..+|+. +++...... . . .......++..++|+..++.... .+.+.+..+ .+..+.
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~ 176 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAW 176 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEE
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeee
Confidence 26779999998 554433221 0 0 12235677788888877755543 233333322 222221
Q ss_pred -----CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE--EEEEe-c-----CCcEE-EEEecCCcE-EEEEeCCC
Q 000085 2118 -----GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL--IRRLV-G-----VDAHA-VSLSSEGVI-MTWNKLQH 2182 (2342)
Q Consensus 2118 -----GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl--IrsL~-g-----h~vss-LSfSpDG~I-lVwdssdG 2182 (2342)
......+.++++|++..|+....+|.+..+|+.+... +..-. + ..... +..-.+|++ ++.+...+
T Consensus 177 ~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~ 256 (334)
T 2p9w_A 177 ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPY 256 (334)
T ss_dssp CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTE
T ss_pred cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCC
Confidence 1122367999999999888887799999999885432 21110 1 11222 344567777 44444445
Q ss_pred eEEEEEeCC
Q 000085 2183 TLSSFTLNG 2191 (2342)
Q Consensus 2183 sI~I~dlnG 2191 (2342)
.+.+.+.++
T Consensus 257 ~~~l~S~Dg 265 (334)
T 2p9w_A 257 AISFRSWDN 265 (334)
T ss_dssp EEEEECSST
T ss_pred EEEEECCCC
Confidence 555554444
No 300
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=93.78 E-value=14 Score=48.94 Aligned_cols=164 Identities=12% Similarity=0.042 Sum_probs=100.3
Q ss_pred cCCcEEEEecCCcccceecc-cCCCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCccccccccCCCCCCccccccCCC
Q 000085 2016 VDGSIKLLTSDGAKTLETAS-GHCAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS 2093 (2342)
Q Consensus 2016 ~DGsIrVWDl~tgkll~tL~-GHt~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG 2093 (2342)
..+.|+..++++......+. ..-..+..++|++.+..|+ +-..++.|..+++......
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~-------------------- 72 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE-------------------- 72 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--------------------
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--------------------
Confidence 46789999998654433322 2234678999998655554 5556677777776542100
Q ss_pred CCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEe---cCCcEEEEEe
Q 000085 2094 STPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRRLV---GVDAHAVSLS 2169 (2342)
Q Consensus 2094 ~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrsL~---gh~vssLSfS 2169 (2342)
..+.........+++.+.++.| ++-...+.|.+.++..... ..+. ......+++.
T Consensus 73 --------------------~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavd 131 (628)
T 4a0p_A 73 --------------------HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALD 131 (628)
T ss_dssp --------------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEE
T ss_pred --------------------EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEc
Confidence 0011111345678888665544 5555667889998864432 2222 1346889999
Q ss_pred cCCcEEEEEe-C-CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2170 SEGVIMTWNK-L-QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2170 pDG~IlVwds-s-dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
|.+..+.|.. . .+.|...+++|....... ..-...+.|++++++..|+.+.
T Consensus 132 p~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD 184 (628)
T 4a0p_A 132 PAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTD 184 (628)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEE
T ss_pred cCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEE
Confidence 8544455543 2 567888888875443332 2345788999999888887663
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=93.61 E-value=0.2 Score=67.22 Aligned_cols=167 Identities=12% Similarity=-0.008 Sum_probs=91.9
Q ss_pred CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEE-eCCCceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2017 DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTG-SQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSG-S~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
.+.|++.++.+.+....+... ..+..++|++.+..|+.. ...+.|..+++.+......
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~-------------------- 443 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-------------------- 443 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC--------------------
T ss_pred ccceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc--------------------
Confidence 457788888776554444332 346688999866665544 4557788887764100000
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEec--CCcEEEEEecCC
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVG--VDAHAVSLSSEG 2172 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~g--h~vssLSfSpDG 2172 (2342)
....+.........+++.+. +.++++-...+.|.+.++........+.. .....++++|++
T Consensus 444 ----------------~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~ 507 (699)
T 1n7d_A 444 ----------------YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVH 507 (699)
T ss_dssp ----------------CCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSS
T ss_pred ----------------eEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCC
Confidence 00000000112345666643 34444545567888888765443322221 335678899876
Q ss_pred cEEEEEe-CC-CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2173 VIMTWNK-LQ-HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2173 ~IlVwds-sd-GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
..++|.. .. +.|..++++|..........-...+.|+|++++..|+.+
T Consensus 508 g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 508 GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEE
T ss_pred CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEE
Confidence 5555543 22 678888777754332221223456789999987766655
No 302
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.47 E-value=3.8 Score=48.02 Aligned_cols=62 Identities=10% Similarity=-0.054 Sum_probs=35.5
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEEEe--cCCcEEEEEecCCcEEEEEeCC-----CeEEEEEeCCc
Q 000085 2131 DLGVVVSCSDS-----SDLLLHSIRRGRLIRRLV--GVDAHAVSLSSEGVIMTWNKLQ-----HTLSSFTLNGV 2192 (2342)
Q Consensus 2131 Dg~lLaSGS~D-----GtIrIWDLrTGklIrsL~--gh~vssLSfSpDG~IlVwdssd-----GsI~I~dlnG~ 2192 (2342)
++.+++.|+.+ ..+.+||+.+.+-...-. .......+...++.+++.+..+ ..+..|++...
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 56666777654 368889988776443221 1111122223378888887543 45778887543
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.40 E-value=5.3 Score=48.98 Aligned_cols=217 Identities=12% Similarity=0.034 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcc-cceec---ccCCCCeEEEEecCC---CCEE-EEEeC---C----CceE
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAK-TLETA---SGHCAPVTCLALSSD---SNFL-VTGSQ---D----TTIL 2063 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgk-ll~tL---~GHt~~VtcLAfSPD---G~~L-aSGS~---D----GTVr 2063 (2342)
...++|.|||+++++ ..+|.|++++. +++ .+..+ .........|+++|+ +..| ++-+. + +.|.
T Consensus 31 P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp EEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 456899999986665 45699999974 444 22211 112345789999997 4444 44432 3 5677
Q ss_pred EEeccCCc--c--ccc----cccCCCCCCccccccCCCCCceeecCCC--------------ccccccCC----------
Q 000085 2064 LWRIHRAF--T--SRT----GTIEPSSGMGTPGNSIGSSTPANASADK--------------SRRRRIEG---------- 2111 (2342)
Q Consensus 2064 VWDl~tg~--~--i~t----~~~~~~~~V~svs~SpDG~~Las~s~D~--------------s~~~~i~~---------- 2111 (2342)
.|+..... . ... ...........+.+.|||...++..... +.+.+...
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~ 188 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN 188 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTT
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCC
Confidence 77765431 0 011 1111122346788999997665533211 11111111
Q ss_pred ceEEecCCCCCeEEEEEec-CCCEEEEEeCCC---cEEEEECCCCe------------------EEEEE-ecC-CcEEEE
Q 000085 2112 PIHVLRGHHREILCCCVSS-DLGVVVSCSDSS---DLLLHSIRRGR------------------LIRRL-VGV-DAHAVS 2167 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DG---tIrIWDLrTGk------------------lIrsL-~gh-~vssLS 2167 (2342)
....-.+|. ....++|+| ++.+.++-...+ .|.+. ..|. .+..+ ..+ ...-++
T Consensus 189 ~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 189 SPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp CCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 011122343 346788999 566554432221 13222 2221 11222 111 245566
Q ss_pred E-------ecCCcEEEEEeCCCeEEEEEeCCc--eee-eecCC-CCCCeEEEEEccCCCEEEEE
Q 000085 2168 L-------SSEGVIMTWNKLQHTLSSFTLNGV--LVA-RAKLP-LSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2168 f-------SpDG~IlVwdssdGsI~I~dlnG~--~L~-s~~~~-Hs~~ItsLafSPDGk~LaSG 2220 (2342)
+ ..+|.+++.+...+.|..+++.+. ... ..... ....+..+++.|||.+.++.
T Consensus 266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 6 367888888888888988888742 221 11221 24679999999999877755
No 304
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=93.37 E-value=2.7 Score=54.18 Aligned_cols=193 Identities=7% Similarity=-0.003 Sum_probs=112.2
Q ss_pred cceeEEEEE-------cCCCCEEEEEEcCC-------cEEEEecCC-cccc-----eecccCCCCeEEEEecCC-CCEEE
Q 000085 1996 IRSSAVVSI-------THDKEIITGGHVDG-------SIKLLTSDG-AKTL-----ETASGHCAPVTCLALSSD-SNFLV 2054 (2342)
Q Consensus 1996 I~Svt~Vaf-------SpDGklLASGS~DG-------sIrVWDl~t-gkll-----~tL~GHt~~VtcLAfSPD-G~~La 2054 (2342)
......++| +++|+.|++..+.+ .|.+++... +... +.+.... ...+++++|+ +.+++
T Consensus 185 ~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYv 263 (496)
T 3kya_A 185 TNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYF 263 (496)
T ss_dssp CSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEE
T ss_pred cCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEE
Confidence 445677999 99999555555443 256665443 2322 2222212 2356788995 55556
Q ss_pred EEeCCCceEEEecc-------CCccc-----------ccc-ccCCCCCCccccccCCCCCceeecCCC--ccccccCCc-
Q 000085 2055 TGSQDTTILLWRIH-------RAFTS-----------RTG-TIEPSSGMGTPGNSIGSSTPANASADK--SRRRRIEGP- 2112 (2342)
Q Consensus 2055 SGS~DGTVrVWDl~-------tg~~i-----------~t~-~~~~~~~V~svs~SpDG~~Las~s~D~--s~~~~i~~~- 2112 (2342)
+-..++.|..+|+. ++... ... ..........++++|+|..+....... +++++....
T Consensus 264 td~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~ 343 (496)
T 3kya_A 264 NSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIK 343 (496)
T ss_dssp EETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred EECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCc
Confidence 66678889999997 44320 011 111223346789999998544433332 232222111
Q ss_pred --e---EEecCC---C------------CCeE-EEEEe-------cCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---
Q 000085 2113 --I---HVLRGH---H------------REIL-CCCVS-------SDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV--- 2161 (2342)
Q Consensus 2113 --l---~~L~GH---s------------~~Vt-~VafS-------PDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh--- 2161 (2342)
+ ..+.+. . .... .++.. .++.+.++-...+.|+.++ .+|. +.++-+.
T Consensus 344 ~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~ 421 (496)
T 3kya_A 344 KEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGAS 421 (496)
T ss_dssp TEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTT
T ss_pred ceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEeccccc
Confidence 1 222221 1 1233 45554 4567777777788899998 4664 4444321
Q ss_pred -----------------------CcEEEEEecC-CcEEEEEeCCCeEEEEEeCC
Q 000085 2162 -----------------------DAHAVSLSSE-GVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2162 -----------------------~vssLSfSpD-G~IlVwdssdGsI~I~dlnG 2191 (2342)
....|+++++ |.+++.+..+..|+.+++.+
T Consensus 422 ~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 422 TSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp HHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred ccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 1357899996 99999999889999988866
No 305
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=92.57 E-value=32 Score=48.94 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=43.4
Q ss_pred cEEEEECCCCeEEEEEecCC---cEEEE---EecC-CcEEEEEe----------CCCeEEEEEeCCceeeeec-CCCCCC
Q 000085 2143 DLLLHSIRRGRLIRRLVGVD---AHAVS---LSSE-GVIMTWNK----------LQHTLSSFTLNGVLVARAK-LPLSGS 2204 (2342)
Q Consensus 2143 tIrIWDLrTGklIrsL~gh~---vssLS---fSpD-G~IlVwds----------sdGsI~I~dlnG~~L~s~~-~~Hs~~ 2204 (2342)
.|++.|..+.+.+..+.-.+ +.+++ +..+ ..+++.+. ..|.|++|.+.+..+.... ....++
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 47778877777776665432 22222 3332 35566553 3478999998644433222 125688
Q ss_pred eEEEEEccCCCEEEEE
Q 000085 2205 IGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2205 ItsLafSPDGk~LaSG 2220 (2342)
|++++-- +| +|++|
T Consensus 888 v~al~~~-~g-~Lla~ 901 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLAS 901 (1158)
T ss_dssp EEEEEEE-TT-EEEEE
T ss_pred CEEEeee-CC-EEEEE
Confidence 8888744 34 55555
No 306
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.35 E-value=21 Score=43.98 Aligned_cols=221 Identities=12% Similarity=0.036 Sum_probs=119.4
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc--eec----ccCCCCeEEEEecCC----CCEEEEEe--CCCceEEEe
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL--ETA----SGHCAPVTCLALSSD----SNFLVTGS--QDTTILLWR 2066 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll--~tL----~GHt~~VtcLAfSPD----G~~LaSGS--~DGTVrVWD 2066 (2342)
...++|.|||+++++-...|.|++++..+++.. ..+ .........|+++|+ +.+.++-+ .++.|.-|.
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~ 113 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRML 113 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEE
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEE
Confidence 456999999998887655899999987655432 111 223456889999995 43334322 344555555
Q ss_pred ccCCc----c---cccc----ccCCCCCCccccccCCCCCceeecCC--------------CccccccCCc---------
Q 000085 2067 IHRAF----T---SRTG----TIEPSSGMGTPGNSIGSSTPANASAD--------------KSRRRRIEGP--------- 2112 (2342)
Q Consensus 2067 l~tg~----~---i~t~----~~~~~~~V~svs~SpDG~~Las~s~D--------------~s~~~~i~~~--------- 2112 (2342)
+..+. . ...+ ..........+.|.+||...++.... ++.+.+....
T Consensus 114 ~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~ 193 (347)
T 3das_A 114 YDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPG 193 (347)
T ss_dssp BCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTT
T ss_pred eCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCC
Confidence 54421 1 1111 11122334568899999766554321 1111111111
Q ss_pred -eEEecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeE------------------EEEEecC--CcEEEEEec
Q 000085 2113 -IHVLRGHHREILCCCVSSDLGVVVSC-SDSSDLLLHSIRRGRL------------------IRRLVGV--DAHAVSLSS 2170 (2342)
Q Consensus 2113 -l~~L~GHs~~Vt~VafSPDg~lLaSG-S~DGtIrIWDLrTGkl------------------IrsL~gh--~vssLSfSp 2170 (2342)
...-.||.+ ...++|+|++.+.++- +.|+.-.|.-+..|.. +..+..+ ...-++|.
T Consensus 194 ~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~- 271 (347)
T 3das_A 194 SPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA- 271 (347)
T ss_dssp CCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE-
T ss_pred CeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE-
Confidence 122235543 4578899987755543 2333233322222211 1122211 12344554
Q ss_pred CCcEEEEEeCCCeEEEEEeCCcee----eeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2171 EGVIMTWNKLQHTLSSFTLNGVLV----ARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2171 DG~IlVwdssdGsI~I~dlnG~~L----~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+|.+++.....+.|..+.+.+... .........++..|+..|||.++++..
T Consensus 272 ~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 272 EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 577777777777777777764321 111112347899999999998877654
No 307
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.17 E-value=10 Score=46.88 Aligned_cols=99 Identities=11% Similarity=0.011 Sum_probs=62.9
Q ss_pred CCeEEEEEecCCCEEEEEe-----------------CCCcEEEEECCCCeEEEEEec-CCcEEEEEecCCcE-EEEEeCC
Q 000085 2121 REILCCCVSSDLGVVVSCS-----------------DSSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVI-MTWNKLQ 2181 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS-----------------~DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~I-lVwdssd 2181 (2342)
...+.+++.++|.+.++.. ..|.|+.+|. ++......+ ...+-+++||||+. ++.+...
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~ 242 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLA 242 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCC
Confidence 3567888888888777654 1245555554 332222222 34678999999965 4556677
Q ss_pred CeEEEEEeC--CceeeeecCCCCCCeEEEEEcc-CCCEEEEEe
Q 000085 2182 HTLSSFTLN--GVLVARAKLPLSGSIGCMEISL-DGHSALIGV 2221 (2342)
Q Consensus 2182 GsI~I~dln--G~~L~s~~~~Hs~~ItsLafSP-DGk~LaSGS 2221 (2342)
+.|..|++. |.......+...+....+++.+ +|.+.+++.
T Consensus 243 ~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 243 HKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred CeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence 899999986 3222211122346778899999 599888664
No 308
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=91.94 E-value=12 Score=46.38 Aligned_cols=132 Identities=14% Similarity=0.213 Sum_probs=80.2
Q ss_pred CCcEEEEEC--CCCeEEEEEec---------CCcEEEEE--ecC-CcE-EEEEeCCCeEEEEEeC----C----ceeeee
Q 000085 2141 SSDLLLHSI--RRGRLIRRLVG---------VDAHAVSL--SSE-GVI-MTWNKLQHTLSSFTLN----G----VLVARA 2197 (2342)
Q Consensus 2141 DGtIrIWDL--rTGklIrsL~g---------h~vssLSf--SpD-G~I-lVwdssdGsI~I~dln----G----~~L~s~ 2197 (2342)
+++|.+|++ .++. +..+.. ....-+|+ ++. |.+ ++....+|.+..|.+. | +.+.+.
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 578999976 3443 444411 23455676 663 543 4445666888888772 2 233333
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC----
Q 000085 2198 KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH---- 2273 (2342)
Q Consensus 2198 ~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~---- 2273 (2342)
. ..+.+..+.+.+...+|+.+-.+ ..|..+|..
T Consensus 177 ~--lgsq~EgcvvDd~~g~Lyv~eEd-----------------------------------------~GIw~~da~p~~~ 213 (355)
T 3amr_A 177 K--MNSQTEGMAADDEYGRLYIAEED-----------------------------------------EAIWKFSAEPDGG 213 (355)
T ss_dssp E--CSSCEEEEEEETTTTEEEEEETT-----------------------------------------TEEEEEECSTTSC
T ss_pred c--CCCCcceEEEcCCCCeEEEeccc-----------------------------------------ceEEEEeCCcCCC
Confidence 3 45678899999888888877532 124444433
Q ss_pred -CCeEEEEEecCC-CCCeEEEEE--ecCCC-EEEEEe-CCCcEEEEeCC
Q 000085 2274 -TLKVFHVLKLGE-GQDITALAL--NKDNT-NLLVST-ADKQLIVFTDP 2316 (2342)
Q Consensus 2274 -Tgk~L~tL~lgH-s~~ItsLaf--SPDG~-~LaSGS-sDGsIrVWDi~ 2316 (2342)
+++.+..+..++ ...+..|++ .++++ +|++++ .++++.||+..
T Consensus 214 ~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 214 SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 344554443222 246888887 56666 677666 67799999964
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=91.91 E-value=35 Score=43.42 Aligned_cols=231 Identities=13% Similarity=0.131 Sum_probs=140.3
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~ 2081 (2342)
.-.+|..++||--. ..++.|+|+++.+.+....-.. .|.--.|-.+ +.|+-.+ +..|.-|++....
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s---------- 136 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGES---------- 136 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSC----------
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCC----------
Confidence 45688888887765 7899999999988777766444 5666677643 3333322 5689999986521
Q ss_pred CCCccccccCCCCCceeecCCCccccccCCceEEecCC----CCCeEEEEEecCCCEEEEEe-------CCCcEEEEECC
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH----HREILCCCVSSDLGVVVSCS-------DSSDLLLHSIR 2150 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH----s~~Vt~VafSPDg~lLaSGS-------~DGtIrIWDLr 2150 (2342)
.|...+.-| ...|..-..+++.++++-.+ -.|.+.+|..+
T Consensus 137 -----------------------------~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 137 -----------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp -----------------------------CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred -----------------------------CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 112222222 23455555666666655332 24678888875
Q ss_pred CCeEEEEEecCCcEEEEEecCCc-----EEEEEeCC---CeEEEEEeCCc---------eeeeecCC---CCCCeEEEEE
Q 000085 2151 RGRLIRRLVGVDAHAVSLSSEGV-----IMTWNKLQ---HTLSSFTLNGV---------LVARAKLP---LSGSIGCMEI 2210 (2342)
Q Consensus 2151 TGklIrsL~gh~vssLSfSpDG~-----IlVwdssd---GsI~I~dlnG~---------~L~s~~~~---Hs~~ItsLaf 2210 (2342)
.+ .-+.+.+|......+-.+|. ++.+..++ +.+++.++... ......++ -.+-..++.+
T Consensus 188 r~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv 266 (494)
T 1bpo_A 188 RK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (494)
T ss_dssp TC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred cc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence 44 45667777766666655552 44444333 67888877321 00111111 1233344445
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeE
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDIT 2290 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~It 2290 (2342)
|+....+..-+ .-|-|++||+.|+.+++.-. -...+|.
T Consensus 267 s~kygviyviT-----------------------------------------K~G~i~lyDleTgt~i~~nr-Is~~~iF 304 (494)
T 1bpo_A 267 SEKHDVVFLIT-----------------------------------------KYGYIHLYDLETGTCIYMNR-ISGETIF 304 (494)
T ss_dssp ETTTTEEEEEE-----------------------------------------TTSEEEEEETTTCCEEEEEE-CCSSCEE
T ss_pred cccCCEEEEEe-----------------------------------------cCceEEEEecccceeeeeec-ccCCceE
Confidence 44444333322 24779999999999999887 4556777
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2291 ALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2291 sLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.-+-+.+..-++.....|.|.--.++.-
T Consensus 305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 305 VTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EecccCCCCcEEEEccCceEEEEEEccc
Confidence 7776666666777788998888775544
No 310
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=91.39 E-value=8.7 Score=45.00 Aligned_cols=61 Identities=5% Similarity=-0.056 Sum_probs=34.1
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeEEEEEe--cCCcEEEEEecCCcEEEEEeC-------CCeEEEEEeCC
Q 000085 2131 DLGVVVSCSDSS-----DLLLHSIRRGRLIRRLV--GVDAHAVSLSSEGVIMTWNKL-------QHTLSSFTLNG 2191 (2342)
Q Consensus 2131 Dg~lLaSGS~DG-----tIrIWDLrTGklIrsL~--gh~vssLSfSpDG~IlVwdss-------dGsI~I~dlnG 2191 (2342)
++.+++.|+.++ .+.+||+.+.+-...-. .......+...++.+++.+.. ...+..|++..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~ 182 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATT 182 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence 566677777553 57788988776433211 111112222347788887643 23477777754
No 311
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=91.25 E-value=9.9 Score=44.62 Aligned_cols=62 Identities=6% Similarity=-0.038 Sum_probs=35.6
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeEEEEEe--cCCcEEEEEecCCcEEEEEeC---------CCeEEEEEeCCc
Q 000085 2131 DLGVVVSCSDS------SDLLLHSIRRGRLIRRLV--GVDAHAVSLSSEGVIMTWNKL---------QHTLSSFTLNGV 2192 (2342)
Q Consensus 2131 Dg~lLaSGS~D------GtIrIWDLrTGklIrsL~--gh~vssLSfSpDG~IlVwdss---------dGsI~I~dlnG~ 2192 (2342)
++.+++.|+.+ ..+.+||+.+.+-...-. .......+...++.+++++.. ...+..|++...
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 56677777765 468899998876433211 111112223347788887643 344777877543
No 312
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=91.18 E-value=1.2 Score=59.92 Aligned_cols=192 Identities=13% Similarity=-0.049 Sum_probs=102.9
Q ss_pred EEEEcCCCCEEEEE-EcCCcEEEEecCC----cccceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCcccc
Q 000085 2001 VVSITHDKEIITGG-HVDGSIKLLTSDG----AKTLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2001 ~VafSpDGklLASG-S~DGsIrVWDl~t----gkll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
.++|++.+..|... ...+.|+.+++.+ ......+.........|++.+. ++++++-...+.|.+.++..... .
T Consensus 410 gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~ 488 (699)
T 1n7d_A 410 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-K 488 (699)
T ss_dssp CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-E
T ss_pred EEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce-E
Confidence 47888866655444 4567899999875 2222222222233566888754 45556656678899998876432 2
Q ss_pred ccccCCCCCCccccccCCCCCceeecCC---CccccccCC-ceEEe-cCCCCCeEEEEEecCCCE-EEEEeCCCcEEEEE
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASAD---KSRRRRIEG-PIHVL-RGHHREILCCCVSSDLGV-VVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D---~s~~~~i~~-~l~~L-~GHs~~Vt~VafSPDg~l-LaSGS~DGtIrIWD 2148 (2342)
.+..........+++.|.+..+....+. .+.+..... ....+ ...-...+.|+|++++.. .++-+..+.|.++|
T Consensus 489 ~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d 568 (699)
T 1n7d_A 489 TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 568 (699)
T ss_dssp EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEc
Confidence 2222222345567778766655444432 222222221 12222 122344678999987554 45555677899999
Q ss_pred CCCCeEEEEEec-----CCcEEEEEecCCcEEEEEeCCCeEEEEEeC-Cceee
Q 000085 2149 IRRGRLIRRLVG-----VDAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVA 2195 (2342)
Q Consensus 2149 LrTGklIrsL~g-----h~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~ 2195 (2342)
+.... .+.+.. .....+++..+ .+++.+...+.|..++.. |..+.
T Consensus 569 ~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 569 VNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp SSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred cCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence 86432 233321 11234455433 344444556788888753 44433
No 313
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=90.71 E-value=5.3 Score=50.49 Aligned_cols=116 Identities=12% Similarity=0.043 Sum_probs=74.5
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCccc----------c--eeccc------CCCCeEEEEecCC---CCEEEEEeCC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKT----------L--ETASG------HCAPVTCLALSSD---SNFLVTGSQD 2059 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkl----------l--~tL~G------Ht~~VtcLAfSPD---G~~LaSGS~D 2059 (2342)
-+..+|+|++||..+ +..|.|..+..+.. + +++.- ...+|..+-|+|- |..|++-..|
T Consensus 70 qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD 148 (452)
T 3pbp_A 70 HVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKED 148 (452)
T ss_dssp EEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETT
T ss_pred EEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecC
Confidence 388999999999875 66888888763221 1 11211 2467999999995 5689999999
Q ss_pred CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2060 TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
++|++||+........ .+.. ......+..+...|.+++|..++=.+...+
T Consensus 149 ~~Ir~yDl~~s~~~P~------------~L~k------------------~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 149 DTITMFDILNSQEKPI------------VLNK------------------PNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp SCEEEEETTCTTSCCE------------EESC------------------CCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred CEEEEEEcccCCCCCc------------chhc------------------cccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 9999999987321110 0000 000111233447788999998766555544
Q ss_pred --CCCcEEEE
Q 000085 2140 --DSSDLLLH 2147 (2342)
Q Consensus 2140 --~DGtIrIW 2147 (2342)
.+|.|+-.
T Consensus 199 ~t~~GDIYAl 208 (452)
T 3pbp_A 199 TTEGGDIFAF 208 (452)
T ss_dssp CTTSCEEEEE
T ss_pred cCCCCCEEEE
Confidence 77777654
No 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=88.69 E-value=75 Score=42.07 Aligned_cols=157 Identities=8% Similarity=-0.087 Sum_probs=86.5
Q ss_pred eeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC--CCceEEEeccCCcccc
Q 000085 1998 SSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ--DTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1998 Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~--DGTVrVWDl~tg~~i~ 2074 (2342)
....+++.+.+. +.++-...+.|.+.++++......+...-..-..|++.|...+|+-... .+.|...++.... ..
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~ 159 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RT 159 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eE
Confidence 344588887655 5555556788999998754332222233455689999986555555443 3556666655432 11
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCC--ccccccC-CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADK--SRRRRIE-GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~--s~~~~i~-~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
.. .........+++++++..+....... +...+.. .....+.........+++.. +.+.++-...+.|...|..+
T Consensus 160 ~l-~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~t 237 (628)
T 4a0p_A 160 TL-VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTS 237 (628)
T ss_dssp EE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred EE-ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCC
Confidence 11 11223445677777666554443322 2222221 11233333344556777764 44555555678899999877
Q ss_pred CeEEEE
Q 000085 2152 GRLIRR 2157 (2342)
Q Consensus 2152 GklIrs 2157 (2342)
|+....
T Consensus 238 g~~~~~ 243 (628)
T 4a0p_A 238 GQNRTI 243 (628)
T ss_dssp CCSCEE
T ss_pred CCceEE
Confidence 754433
No 315
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=88.07 E-value=8.8 Score=44.69 Aligned_cols=146 Identities=8% Similarity=-0.042 Sum_probs=80.5
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCC--------eEEEEecCCCCEEEEEeCCCceEEEecc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAP--------VTCLALSSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~--------VtcLAfSPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
.....++|+|+|.+.++ .+|.++-.+..+.... ...+-... -.++.|.|+|.+.++ .||.|.-|+-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 34457999999997776 6787766665442221 11111112 378899999987777 56888766543
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWD 2148 (2342)
+... ..|.-. -..+-.+--..+.+|.|.|+|.+.+.. ||.++-+.
T Consensus 116 ~~~~--------------------------------~~Wl~~-a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~ 160 (236)
T 1tl2_A 116 QSDT--------------------------------DNWIAR-ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKAL 160 (236)
T ss_dssp CSTT--------------------------------CCHHHH-SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEEC
T ss_pred cCCC--------------------------------Cceecc-ccEeccCCCCceEEEEECCCceEEEEe--CCcEEecC
Confidence 2110 001000 011111122467899999999877665 77765443
Q ss_pred CCCCe------EEEEEe---cCCcEEEEEecCCcEEEEEeCCCeE
Q 000085 2149 IRRGR------LIRRLV---GVDAHAVSLSSEGVIMTWNKLQHTL 2184 (2342)
Q Consensus 2149 LrTGk------lIrsL~---gh~vssLSfSpDG~IlVwdssdGsI 2184 (2342)
.-++. ....+- .+.-+.+.++++|.+.... ++.+
T Consensus 161 ~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 161 PPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp CCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 32211 011111 1223566788888877666 6643
No 316
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=87.89 E-value=14 Score=44.95 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=36.3
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe----E--EEEE-ec-CCcEEEEEecCCcEEEEEe
Q 000085 2121 REILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR----L--IRRL-VG-VDAHAVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk----l--IrsL-~g-h~vssLSfSpDG~IlVwds 2179 (2342)
.....++| .+|.++++.-..+.|...++.... . ...+ .. .....+++.|||.+++.+.
T Consensus 268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 34567777 467766666667778777765332 1 1222 11 2367888899998877764
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=87.50 E-value=18 Score=44.72 Aligned_cols=167 Identities=10% Similarity=0.091 Sum_probs=91.3
Q ss_pred CeEEEEEecCCCEEEEEe------------CCCcEEEEECCC--CeEE-EEEecC-------CcEEEEEec--CCc--EE
Q 000085 2122 EILCCCVSSDLGVVVSCS------------DSSDLLLHSIRR--GRLI-RRLVGV-------DAHAVSLSS--EGV--IM 2175 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS------------~DGtIrIWDLrT--GklI-rsL~gh-------~vssLSfSp--DG~--Il 2175 (2342)
..-.+.+.++|..+++++ .+|.|.++|..+ ++.. -.+.+. ...-+.+.+ +|. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 345666778765555542 689999999873 3321 123221 134455544 564 55
Q ss_pred EEEeC--CCeEEEEEeC--Cceee---eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccc
Q 000085 2176 TWNKL--QHTLSSFTLN--GVLVA---RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFD 2248 (2342)
Q Consensus 2176 Vwdss--dGsI~I~dln--G~~L~---s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFs 2248 (2342)
+.+.. ...+.+|.++ +.... ...-..-...+.+.+.++|.+.++... +..+..+...
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~------~ftd~~~~~~---------- 194 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDH------YFIDPYLKSW---------- 194 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESC------SCSSHHHHHH----------
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCc------EeCCcccccc----------
Confidence 55544 4567777764 22221 111112356899999999998886531 1100000000
Q ss_pred cccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 000085 2249 LASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST-ADKQLIVFTDP 2316 (2342)
Q Consensus 2249 pd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS-sDGsIrVWDi~ 2316 (2342)
+.. .....|.|+.+|..+.+.+ .. .-..-+.++|+||+++|+++. ..+.|..|+..
T Consensus 195 -e~~-------~~~~~g~vyr~d~~~~~~~--~~--~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 195 -EMH-------LGLAWSFVTYYSPNDVRVV--AE--GFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp -HHH-------TTCCCEEEEEECTTCCEEE--EE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred -hhh-------ccCCccEEEEEECCeEEEe--ec--CCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 000 0012456777766432222 11 123568999999998888764 57899999964
No 318
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=86.97 E-value=57 Score=40.19 Aligned_cols=186 Identities=10% Similarity=0.075 Sum_probs=98.1
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC-cccceeccc
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG-AKTLETASG 2036 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t-gkll~tL~G 2036 (2342)
+.+++.-.+.++++|+..+..+.....++. .+..-.|-.+..+-... +..|+-|++.+ ..+.+.+..
T Consensus 78 ~~ViALrag~~LQiFnletK~klks~~~~e----------~VvfWkWis~~~L~lVT--~taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 78 SKVIALKAGKTLQIFNIEMKSKMKAHTMTD----------DVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp SSEEEEEETTEEEEEETTTTEEEEEEECSS----------CEEEEEECSSSEEEEEE--SSEEEEEESSTTCCCEEEEEC
T ss_pred ccEEEEecCCeEEEechHHhhhhcceecCC----------ccEEEEecCCCeEEEEc--CCcEEEEcccCCCCCceeeec
Confidence 334444457899999977632222222211 23334555444432222 67899999875 345555555
Q ss_pred CC----CCeEEEEecCCCCEEEEEe-------CCCceEEEeccCCccccccccCCCCCCccccccCCCC-----Cc--ee
Q 000085 2037 HC----APVTCLALSSDSNFLVTGS-------QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS-----TP--AN 2098 (2342)
Q Consensus 2037 Ht----~~VtcLAfSPDG~~LaSGS-------~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~-----~L--as 2098 (2342)
|. ..|..-..+++.++++-.+ -.|.+.+|..+...... ..+|..... .+-.+|. .+ +.
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~--ieGhaa~F~--~~~~~g~~~~~~lf~fa~ 221 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP--IEGHAASFA--QFKMEGNAEESTLFCFAV 221 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE--ECCSEEEEE--EECCTTCSSCEEEEEEEE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccce--eeeeeeeeE--EEecCCCCCCceEEEEEE
Confidence 43 4577777888888776543 23677888887643211 111111100 0000111 00 00
Q ss_pred ecCCC--ccccccC----------C-ceEEecC---CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2099 ASADK--SRRRRIE----------G-PIHVLRG---HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2099 ~s~D~--s~~~~i~----------~-~l~~L~G---Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
....+ .....++ + .+..+.. -.+-..++.+++....++.-+.-|.+++||+.||.++..-+
T Consensus 222 r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nr 298 (365)
T 2xzh_A 222 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 298 (365)
T ss_dssp EETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEec
Confidence 00000 0011110 0 1111111 13445678888888899999999999999999999987654
No 319
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=86.83 E-value=40 Score=41.21 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=40.4
Q ss_pred CCeEEEEEe-------cCCCEEEEEeCCCcEEEEECCCC-eEE--EEEec---CCcEEEEEecCCcEEEEEe
Q 000085 2121 REILCCCVS-------SDLGVVVSCSDSSDLLLHSIRRG-RLI--RRLVG---VDAHAVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2121 ~~Vt~VafS-------PDg~lLaSGS~DGtIrIWDLrTG-klI--rsL~g---h~vssLSfSpDG~IlVwds 2179 (2342)
.....++|. .+|.++++.-..+.|...++... ... ..+.. .....+++.|||.+++.+.
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 457788884 46777777767778888888753 332 23321 2467889999998888764
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=85.97 E-value=20 Score=41.83 Aligned_cols=62 Identities=5% Similarity=-0.077 Sum_probs=36.2
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEEEe--cCCcEEEEEecCCcEEEEEeCC-----CeEEEEEeCCc
Q 000085 2131 DLGVVVSCSDS-----SDLLLHSIRRGRLIRRLV--GVDAHAVSLSSEGVIMTWNKLQ-----HTLSSFTLNGV 2192 (2342)
Q Consensus 2131 Dg~lLaSGS~D-----GtIrIWDLrTGklIrsL~--gh~vssLSfSpDG~IlVwdssd-----GsI~I~dlnG~ 2192 (2342)
++.+++.|+.+ ..+.+||+.+.+-...-. .......+...++.+++.+..+ ..+.+|++...
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 56667777654 468899988875443211 1111122233477888887653 45778887643
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=85.88 E-value=19 Score=42.34 Aligned_cols=61 Identities=3% Similarity=-0.102 Sum_probs=33.8
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEEEe--cCCcEEEEEecCCcEEEEEeCC-----CeEEEEEeCC
Q 000085 2131 DLGVVVSCSDS-----SDLLLHSIRRGRLIRRLV--GVDAHAVSLSSEGVIMTWNKLQ-----HTLSSFTLNG 2191 (2342)
Q Consensus 2131 Dg~lLaSGS~D-----GtIrIWDLrTGklIrsL~--gh~vssLSfSpDG~IlVwdssd-----GsI~I~dlnG 2191 (2342)
++.+++.|+.+ ..+.+||+.+.+-...-. .......+..-++.+++++..+ ..+..|++..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 193 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPER 193 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCC
Confidence 55666666643 368889988775433211 1111111222377888887543 4577787754
No 322
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=84.52 E-value=26 Score=50.33 Aligned_cols=186 Identities=9% Similarity=0.081 Sum_probs=98.0
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCE-EEEEEcCCcEEEEecCC-cccceec
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEI-ITGGHVDGSIKLLTSDG-AKTLETA 2034 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGkl-LASGS~DGsIrVWDl~t-gkll~tL 2034 (2342)
.+.+++.-.+.+++||+..+..+.....++. .|..-.|-.+..+ |+| +..|+.|++.+ ..+++.+
T Consensus 76 ~~~iiALrag~~lQiFnl~~k~klks~~~~e----------~VvfWkWis~~~l~lVT---~~aVyHW~~~~~s~P~k~f 142 (1630)
T 1xi4_A 76 ASKVIALKAGKTLQIFNIEMKSKMKAHTMTD----------DVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMF 142 (1630)
T ss_pred CcceEEEecCCeEEEeehHHhhhhcccccCC----------CceEEEecCCCeeEEEc---CCeEEEeccCCCCccHHHH
Confidence 3344455568899999976643333333322 1223445444443 333 57899999974 3455555
Q ss_pred ccC----CCCeEEEEecCCCCEEEEEe-------CCCceEEEeccCCccccccccCCC------------CCCcccccc-
Q 000085 2035 SGH----CAPVTCLALSSDSNFLVTGS-------QDTTILLWRIHRAFTSRTGTIEPS------------SGMGTPGNS- 2090 (2342)
Q Consensus 2035 ~GH----t~~VtcLAfSPDG~~LaSGS-------~DGTVrVWDl~tg~~i~t~~~~~~------------~~V~svs~S- 2090 (2342)
..| ...|..-..+++.++++-.| -.|.+.++.++...... ..+|. ....-++|.
T Consensus 143 dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~--iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP--IEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh--hhHhHhhhheeccCCCCCCceEEEEEE
Confidence 555 35677778888888876433 35788899887643211 11111 111111111
Q ss_pred --CCCCCc-eeecCCC-cccccc-CCceEEecC---CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2091 --IGSSTP-ANASADK-SRRRRI-EGPIHVLRG---HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2091 --pDG~~L-as~s~D~-s~~~~i-~~~l~~L~G---Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
+.|..+ +.-.... ...... .+.+..+.. -.+-..++.+++....+..-+.-|.|.++|+.||.++..
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 111111 0000000 000000 001111111 123345677788888888899999999999999988754
No 323
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=84.05 E-value=33 Score=49.33 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=44.0
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCC-EEEEEeCCCceEEEeccC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSN-FLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl~t 2069 (2342)
.-.+|..++||--. ..++.|+|+++...+.+..-. ..|.--.|-.+.. -||| +..|.-|++..
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~l~lVT---~~aVyHW~~~~ 134 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT---DNAVYHWSMEG 134 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCCeeEEEc---CCeEEEeccCC
Confidence 34578788777664 789999999988777766543 4577777764432 2343 56799999965
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=83.99 E-value=45 Score=40.65 Aligned_cols=64 Identities=8% Similarity=0.185 Sum_probs=43.1
Q ss_pred CCeEEEEEec-------CCCEEEEEeCCCcEEEEECCCCeEEEE--Ee-c--CCcEEEEEecCCcEEEEEe-CCCeE
Q 000085 2121 REILCCCVSS-------DLGVVVSCSDSSDLLLHSIRRGRLIRR--LV-G--VDAHAVSLSSEGVIMTWNK-LQHTL 2184 (2342)
Q Consensus 2121 ~~Vt~VafSP-------Dg~lLaSGS~DGtIrIWDLrTGklIrs--L~-g--h~vssLSfSpDG~IlVwds-sdGsI 2184 (2342)
..+..++|.. ++.++++.-..+.|...++..++.+.. +- . .....+++.|||.+++.+. .+|.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 4677888864 467777777778888888876654433 21 1 2467889999999887643 44544
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=83.56 E-value=55 Score=38.53 Aligned_cols=61 Identities=8% Similarity=-0.054 Sum_probs=35.0
Q ss_pred CCCEEEEEeCC--------CcEEEEECCCCeEEEE--EecCCcEEEEEecCCcEEEEEeC-C-----CeEEEEEeCC
Q 000085 2131 DLGVVVSCSDS--------SDLLLHSIRRGRLIRR--LVGVDAHAVSLSSEGVIMTWNKL-Q-----HTLSSFTLNG 2191 (2342)
Q Consensus 2131 Dg~lLaSGS~D--------GtIrIWDLrTGklIrs--L~gh~vssLSfSpDG~IlVwdss-d-----GsI~I~dlnG 2191 (2342)
++.+++.|+.+ ..+.+||+.+.+-... +........+...++++++++.. + ..+..|+...
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 174 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKK 174 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence 55666666632 4688999988754322 11111222233367788888765 1 3577888764
No 326
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=83.55 E-value=38 Score=43.04 Aligned_cols=102 Identities=10% Similarity=0.017 Sum_probs=62.5
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE--EEec--------CCcEEEEEec----CCcEEEEEeC-----
Q 000085 2120 HREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR--RLVG--------VDAHAVSLSS----EGVIMTWNKL----- 2180 (2342)
Q Consensus 2120 s~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr--sL~g--------h~vssLSfSp----DG~IlVwdss----- 2180 (2342)
-...+.++|.|+|+++++-...+.|++++..++.... .+.. .....++++| +|.+++....
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456899999999977765544579888876665432 2221 1234789999 6777776643
Q ss_pred -------CCeEEEEEeCCc--e------eee-ecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2181 -------QHTLSSFTLNGV--L------VAR-AKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2181 -------dGsI~I~dlnG~--~------L~s-~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
...|..|..+.. . +.. ...........|+|.|||.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 235666665321 1 111 1111123578999999998877665
No 327
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=83.06 E-value=30 Score=43.88 Aligned_cols=160 Identities=11% Similarity=0.098 Sum_probs=93.2
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccC----CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGH----CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GH----t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
...+.+|.-++.. .++.||.-++..+...+.+.-- -+.|..+..+|+|++|+..+ +.+|.|-.+..+.......
T Consensus 26 ~~~~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccc
Confidence 3445566655554 3689999888754444444332 23588899999999998875 5588888876421110000
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCCe-
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD---LGVVVSCSDSSDLLLHSIRRGR- 2153 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD---g~lLaSGS~DGtIrIWDLrTGk- 2153 (2342)
.....+ ....+.++.. . .....+|..+.|+|- +..+++-..|++|++||+....
T Consensus 104 -~~~~~~------------------q~~ty~l~~~-~--~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~ 161 (452)
T 3pbp_A 104 -SIQDAF------------------QIFHYSIDEE-E--VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE 161 (452)
T ss_dssp -HHHHTT------------------EEEEEEGGGC-C----CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS
T ss_pred -cccccc------------------ceeEEEcCCc-c--cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC
Confidence 000000 0000111110 0 113678999999985 5689999999999999998532
Q ss_pred -EEEEEe------c-----CCcEEEEEecCCcEEEEEe--CCCeEEE
Q 000085 2154 -LIRRLV------G-----VDAHAVSLSSEGVIMTWNK--LQHTLSS 2186 (2342)
Q Consensus 2154 -lIrsL~------g-----h~vssLSfSpDG~IlVwds--sdGsI~I 2186 (2342)
.. .+. + .++..+||+.+|-.+..-+ +.|.|+.
T Consensus 162 ~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 162 KPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred CCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 22 222 1 3467888988765444423 4566543
No 328
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=82.26 E-value=22 Score=43.68 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=68.0
Q ss_pred EEEEEEcCCcEEEEecCCcccceecccC-CCCeEEEEe--cC-CCCEEEEE-eCCCceEEEeccCCccccccccCCCCCC
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETASGH-CAPVTCLAL--SS-DSNFLVTG-SQDTTILLWRIHRAFTSRTGTIEPSSGM 2084 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL~GH-t~~VtcLAf--SP-DG~~LaSG-S~DGTVrVWDl~tg~~i~t~~~~~~~~V 2084 (2342)
+++.|+.||.|.-.|..+|+.+-++... ..++....- .+ ++..++.. +.||.+..++..++.......
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~------- 84 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLS------- 84 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEE-------
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeec-------
Confidence 6778889999999999999887766543 122222110 01 22333333 589999888877652211110
Q ss_pred ccccccCCCCCceeecCCCccccccCCce--EEecCCCCCeE-EEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 000085 2085 GTPGNSIGSSTPANASADKSRRRRIEGPI--HVLRGHHREIL-CCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV 2161 (2342)
Q Consensus 2085 ~svs~SpDG~~Las~s~D~s~~~~i~~~l--~~L~GHs~~Vt-~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh 2161 (2342)
+...+ .-+.+...+|. ..--+..+..+++|+.+|.+...|+++|+.+..+...
T Consensus 85 ------------------------~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 85 ------------------------IRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp ------------------------HHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ------------------------cccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 00000 00011111111 0000014567899999999999999999999998643
No 329
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=81.77 E-value=30 Score=43.94 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=21.7
Q ss_pred CeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 2040 PVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2040 ~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
.-+.++|.|+|+++|+-...+.|.+++..+
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~ 57 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPES 57 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCC
Confidence 467999999999887754445677776543
No 330
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=80.41 E-value=1e+02 Score=36.97 Aligned_cols=88 Identities=9% Similarity=-0.038 Sum_probs=54.8
Q ss_pred EEecCCCEEEEEe----CCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeC-CCeEEEEEeCCceeeeecCCC
Q 000085 2127 CVSSDLGVVVSCS----DSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKL-QHTLSSFTLNGVLVARAKLPL 2201 (2342)
Q Consensus 2127 afSPDg~lLaSGS----~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdss-dGsI~I~dlnG~~L~s~~~~H 2201 (2342)
.|+++++.|+-.. .+..|+.-++.. .....+..+.. ..++++|..+.|... ...|...+++|.......
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~--- 183 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY--- 183 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE---
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe---
Confidence 5677888887665 344566666653 33444444433 467889999998866 467777787776544332
Q ss_pred CCCeEEEEEccCCCEEEEEe
Q 000085 2202 SGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2202 s~~ItsLafSPDGk~LaSGS 2221 (2342)
.+... ..++|++.+|+-..
T Consensus 184 ~~~~~-~~~~P~g~~iy~t~ 202 (302)
T 3s25_A 184 DCNCY-KPVVLDDTNVYYMD 202 (302)
T ss_dssp CSCEE-EEEEEETTEEEEEE
T ss_pred CCCcc-ceeeecCCEEEEEE
Confidence 22232 34668898888654
No 331
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=79.73 E-value=32 Score=40.11 Aligned_cols=61 Identities=3% Similarity=-0.130 Sum_probs=34.4
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCeEEEE--EecCCcEEEEEecCCcEEEEEeCC-----CeEEEEEeCC
Q 000085 2131 DLGVVVSCSDS-------SDLLLHSIRRGRLIRR--LVGVDAHAVSLSSEGVIMTWNKLQ-----HTLSSFTLNG 2191 (2342)
Q Consensus 2131 Dg~lLaSGS~D-------GtIrIWDLrTGklIrs--L~gh~vssLSfSpDG~IlVwdssd-----GsI~I~dlnG 2191 (2342)
++.+++.|+.+ ..+.+||+.+.+-... +........+...++.+++.+..+ ..+.+|++..
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCC
Confidence 45566666543 3588899987754432 111111112223477888887543 3577888764
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=79.00 E-value=77 Score=37.30 Aligned_cols=62 Identities=10% Similarity=-0.030 Sum_probs=35.1
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCeEEEEEecC--CcEEEEEecCCcEEEEEeC------CCeEEEEEeCCc
Q 000085 2131 DLGVVVSCSDS-------SDLLLHSIRRGRLIRRLVGV--DAHAVSLSSEGVIMTWNKL------QHTLSSFTLNGV 2192 (2342)
Q Consensus 2131 Dg~lLaSGS~D-------GtIrIWDLrTGklIrsL~gh--~vssLSfSpDG~IlVwdss------dGsI~I~dlnG~ 2192 (2342)
++.+++.|+.+ ..+.+||+.+.+-...-... .....+...++.+++++.. ...+..|++...
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence 56666777654 25788898877544321111 1111222367888887753 235788887643
No 333
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=78.78 E-value=38 Score=39.62 Aligned_cols=62 Identities=6% Similarity=0.050 Sum_probs=34.4
Q ss_pred CCCCEEEEEEcC----CcEEEEecCCcccce--ecccCCCCeEEEEecCCCCEEEEEeCC------CceEEEeccC
Q 000085 2006 HDKEIITGGHVD----GSIKLLTSDGAKTLE--TASGHCAPVTCLALSSDSNFLVTGSQD------TTILLWRIHR 2069 (2342)
Q Consensus 2006 pDGklLASGS~D----GsIrVWDl~tgkll~--tL~GHt~~VtcLAfSPDG~~LaSGS~D------GTVrVWDl~t 2069 (2342)
-++.+++.|+.+ ..+.+||..+.+-.. .+......-.++.+ ++..++.|+.+ ..+.+||..+
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~ 127 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRT 127 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCC
Confidence 367777777755 678889988764322 12111111122222 56777777765 3456666655
No 334
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=78.02 E-value=1.9e+02 Score=38.45 Aligned_cols=212 Identities=9% Similarity=0.012 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc--
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG-- 2076 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~-- 2076 (2342)
+.++....+|. |-.|+.+| +..||..+.+...........|.++... +| .|..|+.+ -+..+|..+.......
T Consensus 65 i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~ 139 (758)
T 3ott_A 65 IYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLTSFDTR 139 (758)
T ss_dssp EEEEEEETTTE-EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEEEECHH
T ss_pred EEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEEEeccC
Confidence 45566666665 44455554 7889987764332111123457777653 44 55556665 5777787654322110
Q ss_pred -ccCCCCCCccccccCCCCCceeecCCCccccccCCc-eEEecC------CCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000085 2077 -TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP-IHVLRG------HHREILCCCVSSDLGVVVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2077 -~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~-l~~L~G------Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWD 2148 (2342)
.......+.++....+|...+.. ..+...++.... ...+.. ....|.++....++..|..|+. +-+..+|
T Consensus 140 ~~~l~~~~i~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~ 217 (758)
T 3ott_A 140 RNGLPNNTIYSIIRTKDNQIYVGT-YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYF 217 (758)
T ss_dssp HHCCSCSCEEEEEECTTCCEEEEE-TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEE
T ss_pred CCCcCCCeEEEEEEcCCCCEEEEe-CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEc
Confidence 01112334455555556554433 334433332211 111111 1234888888777775555554 4688899
Q ss_pred CCCCeEEE--EEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecC------C-CCCCeEEEEEccCCCEEEE
Q 000085 2149 IRRGRLIR--RLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKL------P-LSGSIGCMEISLDGHSALI 2219 (2342)
Q Consensus 2149 LrTGklIr--sL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~------~-Hs~~ItsLafSPDGk~LaS 2219 (2342)
..+++... .+....+..+....+|.+.+-. .+-+.+|+.....+..... . ....|.++....+|...+.
T Consensus 218 ~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT--~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiG 295 (758)
T 3ott_A 218 PSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT--DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLG 295 (758)
T ss_dssp TTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE--TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEE
T ss_pred CCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe--CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEE
Confidence 88775432 2333346667777788876644 3446677665433322211 0 2356899998888887663
No 335
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=78.01 E-value=86 Score=38.55 Aligned_cols=106 Identities=10% Similarity=0.043 Sum_probs=65.8
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE--EEEe-----c-CCcEEEEEecC----CcEEEEEe--CC
Q 000085 2116 LRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLI--RRLV-----G-VDAHAVSLSSE----GVIMTWNK--LQ 2181 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklI--rsL~-----g-h~vssLSfSpD----G~IlVwds--sd 2181 (2342)
+...-...+.++|.|+|.++++--..|.|++++..++... ..+. + .....++++|| |.++++.. ..
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3334456789999999998777665899999987666542 2221 1 22467999985 77776543 34
Q ss_pred CeEEEEEeCCc-----ee------ee-ecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2182 HTLSSFTLNGV-----LV------AR-AKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2182 GsI~I~dlnG~-----~L------~s-~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+.|..|...+. .+ .. ........-..|+|.|||.+.++.+
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 56666766541 11 11 1111112346799999998777654
No 336
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=77.54 E-value=1.7e+02 Score=37.47 Aligned_cols=99 Identities=10% Similarity=0.137 Sum_probs=55.6
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc-ccceecccC
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA-KTLETASGH 2037 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg-kll~tL~GH 2037 (2342)
.+++.-.+.++++|+..+..+.....++. .|..-.|-.+.. |+-. .+..|+-|++.+. .+++.+..|
T Consensus 78 ~iiALrag~~lQiFnle~K~klks~~~~e----------~VvfWkWis~~~-l~lV-T~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 78 KVIALKAGKTLQIFNIEMKSKMKAHTMTD----------DVTFWKWISLNT-VALV-TDNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp SCEEEEETTEEEEEETTTTEEEEEEECSS----------CCCEEEEEETTE-EEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred cEEEEecCCeEEEEchHHhhhhcceecCC----------CceEEEecCCCe-EEEE-cCCeeEEecccCCCCchhheecc
Confidence 33344458899999977633322222211 122234444433 3222 2678999999753 455555555
Q ss_pred C----CCeEEEEecCCCCEEEEEe-------CCCceEEEeccC
Q 000085 2038 C----APVTCLALSSDSNFLVTGS-------QDTTILLWRIHR 2069 (2342)
Q Consensus 2038 t----~~VtcLAfSPDG~~LaSGS-------~DGTVrVWDl~t 2069 (2342)
. ..|..-..+++.++++-.+ -.|.+.+|..+.
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 3 4577777888888876433 234556666655
No 337
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=77.35 E-value=59 Score=43.51 Aligned_cols=63 Identities=8% Similarity=-0.026 Sum_probs=39.7
Q ss_pred cCCCEEEEEeCCC--cEEEEECCCCeEEEEEe---c--C--CcEEEEEecC-CcEEEEEeC-------CCeEEEEEeCCc
Q 000085 2130 SDLGVVVSCSDSS--DLLLHSIRRGRLIRRLV---G--V--DAHAVSLSSE-GVIMTWNKL-------QHTLSSFTLNGV 2192 (2342)
Q Consensus 2130 PDg~lLaSGS~DG--tIrIWDLrTGklIrsL~---g--h--~vssLSfSpD-G~IlVwdss-------dGsI~I~dlnG~ 2192 (2342)
.++.+++.|+.++ .+.+||+.+..-...-. . . ....+++..+ +.+++++.. ...+..|++...
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 3778888887655 79999998876443221 0 0 1233454555 888888865 245788887643
No 338
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=75.89 E-value=1.4e+02 Score=35.71 Aligned_cols=166 Identities=11% Similarity=0.055 Sum_probs=95.0
Q ss_pred EEEEcCCCCEEEEEEcC--------------CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe--CCCceEE
Q 000085 2001 VVSITHDKEIITGGHVD--------------GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS--QDTTILL 2064 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~D--------------GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS--~DGTVrV 2064 (2342)
+--++++|..|+-.... +.|+..++++++... +.. .. +..|++++++|+-.. .++.-.|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceE
Confidence 34568889977766543 467777887765333 221 11 236677888887665 4555555
Q ss_pred EeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CCc
Q 000085 2065 WRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SSD 2143 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DGt 2143 (2342)
|.+.... .....+..+.. ..|+++++.|+-.+. ...
T Consensus 132 y~~~~dG---------------------------------------s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~ 168 (302)
T 3s25_A 132 YRIRIDG---------------------------------------EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQ 168 (302)
T ss_dssp EEEETTS---------------------------------------CCCEEEESSCC----CCSEEETTEEEEECTTTCC
T ss_pred EEEECCC---------------------------------------CCeEEEeCCCc----eEeeEECCEEEEEeCCCce
Confidence 5544310 00111222221 345677777775554 678
Q ss_pred EEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCC--CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2144 LLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQ--HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2144 IrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssd--GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
|.+-++..+...+.+.+ .....+.|+|..++|.... ..|..-+++|....... ...+ ..|+|+|.+|.-++
T Consensus 169 Iy~~~l~g~~~~~l~~~--~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt---~~~~--~~~~~~g~~Iy~~~ 241 (302)
T 3s25_A 169 LYRYDTASQSEALFYDC--NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT---EANI--EHYNVYGSLIFYQR 241 (302)
T ss_dssp EEEEETTTTEEEEEECS--CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECS---CSCE--EEEEEETTEEEEEE
T ss_pred EEEEECCCCCEEEEeCC--CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEe---CCCc--ceEEECCCEEEEEE
Confidence 88888876654433332 2233467999999987544 35666666665433221 2333 34788888887553
No 339
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=74.08 E-value=39 Score=39.69 Aligned_cols=62 Identities=5% Similarity=-0.082 Sum_probs=35.2
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEE--EecCCcEEEEEecCCcEEEEEeCC-----CeEEEEEeCCc
Q 000085 2131 DLGVVVSCSDS-----SDLLLHSIRRGRLIRR--LVGVDAHAVSLSSEGVIMTWNKLQ-----HTLSSFTLNGV 2192 (2342)
Q Consensus 2131 Dg~lLaSGS~D-----GtIrIWDLrTGklIrs--L~gh~vssLSfSpDG~IlVwdssd-----GsI~I~dlnG~ 2192 (2342)
++.+++.|+.+ ..+.+||+.+.+-... +........+..-++.+++.+..+ ..+.+|++...
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 56666777654 4588899887754322 111111111222378888887543 45788887643
No 340
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=68.84 E-value=3e+02 Score=36.57 Aligned_cols=175 Identities=10% Similarity=0.082 Sum_probs=93.2
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec-ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA-SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL-~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
.|.++.-..+|.+- .|+.+| +..||-..-+..... ......|.++....+| .|..|+.+| +..+|..+.....
T Consensus 23 ~V~~I~qD~~G~lW-igT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~-- 96 (758)
T 3ott_A 23 VVSCFLQDSEGLIW-IGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ-- 96 (758)
T ss_dssp CEEEEEECTTSCEE-EEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC--
T ss_pred eEEEEEECCCCCEE-EEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC--
Confidence 45667777777644 455666 555663221111110 1123568898877665 566666655 6778876532100
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
+ .......|.++.. .++ .+..|+.+ .+..+|..+++...
T Consensus 97 --------------~------------------------~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~ 135 (758)
T 3ott_A 97 --------------P------------------------ETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTS 135 (758)
T ss_dssp --------------C------------------------SCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEE
T ss_pred --------------c------------------------ccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEE
Confidence 0 0001124666654 344 45556655 68889987766443
Q ss_pred E------EecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC-----CCCCeEEEEEccCCCEEEEEe
Q 000085 2157 R------LVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP-----LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2157 s------L~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~-----Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
. +....+..+....+|.+.+.. .+-+..|+...........+ ....|.++....++..|-.|+
T Consensus 136 ~~~~~~~l~~~~i~~i~~d~~g~lWigt--~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt 209 (758)
T 3ott_A 136 FDTRRNGLPNNTIYSIIRTKDNQIYVGT--YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT 209 (758)
T ss_dssp ECHHHHCCSCSCEEEEEECTTCCEEEEE--TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE
T ss_pred eccCCCCcCCCeEEEEEEcCCCCEEEEe--CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE
Confidence 2 111235666777788876643 34466777654433322211 123488888877776554454
No 341
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=68.12 E-value=29 Score=45.05 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=63.6
Q ss_pred CceEEEEee-eeEeeee-eeeEEEEEEEeeEEEEEeCCCCCCCCCCccccccccceEeeccceeEEeeccc----cCccc
Q 000085 1472 DERIVFELP-SSMVRPL-RVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQEKDRSWLMSSLHQIYSRRY----LLRRS 1545 (2342)
Q Consensus 1472 ~EkVils~~-c~mVtPl-~v~~G~L~IT~~~LyF~vd~~~~~~~~~~~~~~~~k~~~~~~~~I~~i~~Rr~----~l~~~ 1545 (2342)
+|.|+.+.. +.++.|. ....|+|.||+.+|+|...+... .....+++..|..|.+..- .-...
T Consensus 12 GE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~~-----------~~~~~iPL~~I~~vek~~~~s~~~~~~~ 80 (528)
T 1zsq_A 12 GENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDP-----------PFVLDASLGVINRVEKIGGASSRGENSY 80 (528)
T ss_dssp TCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSS-----------CEEEEEEGGGEEEEEEECCTTCCSTTCS
T ss_pred CCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCCc-----------cEEEEeeccceEEEEEcCCCCcCCCCCc
Confidence 456665533 2234332 46899999999999999754211 1123456677777776321 11235
Q ss_pred EEEEEEeCCceEEEEcCCh-hhHHHHHHHHHhcC
Q 000085 1546 ALELFMVDRSNFFFDFGST-EGRRNAYRAIVQAR 1578 (2342)
Q Consensus 1546 alEif~~~~~s~f~~F~~~-~~~~~~~~~i~~~~ 1578 (2342)
.|+|.++|-+.+-|.|... .++.+++..|.+..
T Consensus 81 ~l~I~CKDfr~~~f~f~~~~~~~~~v~~~L~~~~ 114 (528)
T 1zsq_A 81 GLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYA 114 (528)
T ss_dssp EEEEEETTTEEEEEECCGGGCCHHHHHHHHHHHS
T ss_pred eEEEEccCCeEEEEEecCchHHHHHHHHHHHHHh
Confidence 7999999999999999865 34788998887653
No 342
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=67.99 E-value=23 Score=46.83 Aligned_cols=95 Identities=18% Similarity=0.186 Sum_probs=63.9
Q ss_pred CceEEEEee-eeEeeee-eeeEEEEEEEeeEEEEEeCCCCCCCCCCccccccccceEeeccceeEEeeccc----cCccc
Q 000085 1472 DERIVFELP-SSMVRPL-RVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQEKDRSWLMSSLHQIYSRRY----LLRRS 1545 (2342)
Q Consensus 1472 ~EkVils~~-c~mVtPl-~v~~G~L~IT~~~LyF~vd~~~~~~~~~~~~~~~~k~~~~~~~~I~~i~~Rr~----~l~~~ 1545 (2342)
+|.++.+.. +.++.|. ....|+|.||+.+|+|...+... ....-+++..|..|.+..- .-...
T Consensus 84 GE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~~-----------~~~~~IPL~~I~~Iekv~g~s~~g~~~~ 152 (657)
T 1lw3_A 84 GENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDP-----------PFVLDASLGVINRVEKIGGASSRGENSY 152 (657)
T ss_dssp TCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSS-----------CEEEEEEGGGEEEEEEECCTTCCSTTCS
T ss_pred CeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCCCc-----------ceEEEecccceEEEEecCCCcccCCCCc
Confidence 566666543 3345554 56899999999999999654211 0123346677777776321 11235
Q ss_pred EEEEEEeCCceEEEEcCCh-hhHHHHHHHHHhc
Q 000085 1546 ALELFMVDRSNFFFDFGST-EGRRNAYRAIVQA 1577 (2342)
Q Consensus 1546 alEif~~~~~s~f~~F~~~-~~~~~~~~~i~~~ 1577 (2342)
.|+|.++|-+.+-|.|... ..+.++|..|...
T Consensus 153 ~l~I~CKDfR~~~f~f~~~~~~~~~v~~~L~~~ 185 (657)
T 1lw3_A 153 GLETVCKDIRNLRFAHKPEGRTRRSIFENLMKY 185 (657)
T ss_dssp EEEEEETTTEEEEEECCGGGCCHHHHHHHHHHH
T ss_pred eEEEEecCCcEEEEEeCCccchHHHHHHHHHHH
Confidence 7999999999999999865 3478888888654
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=66.33 E-value=58 Score=38.96 Aligned_cols=49 Identities=16% Similarity=0.092 Sum_probs=24.8
Q ss_pred cEEEEECCCCeE--EEEEecCCcEEEEEecCCcEEEEEeCCC------eEEEEEeCC
Q 000085 2143 DLLLHSIRRGRL--IRRLVGVDAHAVSLSSEGVIMTWNKLQH------TLSSFTLNG 2191 (2342)
Q Consensus 2143 tIrIWDLrTGkl--IrsL~gh~vssLSfSpDG~IlVwdssdG------sI~I~dlnG 2191 (2342)
.+.+||+.+.+- +..+........++..++++++++..++ .+.++++++
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~ 342 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKD 342 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-C
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcC
Confidence 577899886643 3333222222333456788888886542 344455554
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=66.01 E-value=39 Score=45.20 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=36.4
Q ss_pred CCCEEEEEEcC------CcEEEEecCCcccce--ecccCCCCeEEEEecCCCCEEEEEeCCC--ceEEEeccCC
Q 000085 2007 DKEIITGGHVD------GSIKLLTSDGAKTLE--TASGHCAPVTCLALSSDSNFLVTGSQDT--TILLWRIHRA 2070 (2342)
Q Consensus 2007 DGklLASGS~D------GsIrVWDl~tgkll~--tL~GHt~~VtcLAfSPDG~~LaSGS~DG--TVrVWDl~tg 2070 (2342)
++++++.|+.+ +.+.+||..+.+-.. .+......-.++.+ .++..++.|+.++ .+.+||..+.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~-~~~~iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSL-PDGNVLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEEC-TTSCEEEECCBCSSCSEEEEETTTT
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEE-cCCEEEEECCCCCCCCEEEEECCCC
Confidence 77877777754 357888887753221 12111111122222 3778888887665 5777777663
No 345
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=65.78 E-value=18 Score=46.73 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=58.5
Q ss_pred eeeeEEEEEEEeeEEEEEeCCCCCCCCCCccccccccceEeeccceeEEeeccccCcccEEEEEEeCCceEEEEcCChhh
Q 000085 1487 LRVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEG 1566 (2342)
Q Consensus 1487 l~v~~G~L~IT~~~LyF~vd~~~~~~~~~~~~~~~~k~~~~~~~~I~~i~~Rr~~l~~~alEif~~~~~s~f~~F~~~~~ 1566 (2342)
.....|+|.||+.+|+|..+.. +..-.++..|..|-++.-.-+...|+|.++|-+.+=|.|...+.
T Consensus 22 ~~~~~GtL~lTn~~LiF~~~~~--------------~e~wi~~~~I~~VeK~~~~~~~~~l~I~CKDfr~~~f~f~~~~~ 87 (512)
T 2yf0_A 22 NKSLTGTLYLTATHLLFIDSHQ--------------KETWILHHHIASVEKLALTTSGCPLVIQCKNFRTVHFIVPRERD 87 (512)
T ss_dssp --CCEEEEEECSSEEEEEESSS--------------CEEEEEGGGEEEEEECCCBTTBEEEEEEETTSCEEEEEESCHHH
T ss_pred CCceeEEEEEECCEEEEeCCCC--------------CceEecccceeEEEEecCCCCCceEEEEecCCcEEEEEeCChHH
Confidence 4578999999999999996321 12223566677776654333345799999999999999999888
Q ss_pred HHHHHHHHHhcCCC
Q 000085 1567 RRNAYRAIVQARPP 1580 (2342)
Q Consensus 1567 ~~~~~~~i~~~~~~ 1580 (2342)
+.++|+.|.+...|
T Consensus 88 ~~~v~~sL~~~~~p 101 (512)
T 2yf0_A 88 CHDIYNSLLQLSKQ 101 (512)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhcCC
Confidence 89999988766433
No 346
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=63.20 E-value=1.1e+02 Score=35.83 Aligned_cols=94 Identities=7% Similarity=-0.115 Sum_probs=55.3
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCC---------eEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeC-Cc
Q 000085 2123 ILCCCVSSDLGVVVSCSDSSDLLLHSIRRG---------RLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GV 2192 (2342)
Q Consensus 2123 Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG---------klIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dln-G~ 2192 (2342)
..++.|.++|.+.++ .||.|+-++--+. ..+..--......|.++|+|.+.+.. ++.++..... +.
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~ 165 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSN 165 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSST
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCC
Confidence 578899999988777 5699988876331 12211112346899999999988777 6765433221 10
Q ss_pred ----e-eeee-cCCCCCCeEEEEEccCCCEEEEE
Q 000085 2193 ----L-VARA-KLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2193 ----~-L~s~-~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
. .... ....-....-+.|+++|...++.
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred CcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence 0 0000 00122234456788888877755
No 347
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=63.03 E-value=1.2e+02 Score=36.14 Aligned_cols=48 Identities=10% Similarity=-0.081 Sum_probs=25.9
Q ss_pred CcEEEEECCCCeEEEE--EecCC-cEEEEEecCCcEEEEEeC------CCeEEEEEe
Q 000085 2142 SDLLLHSIRRGRLIRR--LVGVD-AHAVSLSSEGVIMTWNKL------QHTLSSFTL 2189 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrs--L~gh~-vssLSfSpDG~IlVwdss------dGsI~I~dl 2189 (2342)
..+.+||+.+.+-... +.... ....+...++.+++.+.. ...+..|++
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEe
Confidence 4788999987754332 22111 112223346777777642 335666765
No 348
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=57.89 E-value=38 Score=35.02 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=50.7
Q ss_pred CceEEEEeeeeEeeeeeeeEEEEEEEeeEEEEEeCCCCCCCCCCccccccccceEeeccceeEEeeccccCcccEEEEEE
Q 000085 1472 DERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELFM 1551 (2342)
Q Consensus 1472 ~EkVils~~c~mVtPl~v~~G~L~IT~~~LyF~vd~~~~~~~~~~~~~~~~k~~~~~~~~I~~i~~Rr~~l~~~alEif~ 1551 (2342)
.|.+.+.++-.-. +...|+|.++.++|.+.++..+. ......+.+|+....--=.--..-|.||+
T Consensus 5 ~~~~ll~v~~v~y---KK~dGtL~l~~d~i~W~p~~~~~------------~~vs~~~~~I~~qq~SP~~k~KVqLqi~l 69 (108)
T 1pfj_A 5 SEEVLLIVKKVRQ---KKQDGALYLMAERIAWAPEGKDR------------FTISHMYADIKCQKISPEGKAKIQLQLVL 69 (108)
T ss_dssp SCCEEEEESCCBC---SSCBCEEEEETTEEEEECSSSSS------------CSEEEETTTCCCEEECCSSSSSCEEEEEC
T ss_pred chheeEEehhhee---ecCCceEEEEcceEEEccCCCCC------------ceEEEehhhhhcceeCCCCCccEEEEEEE
Confidence 3455555443332 24559999999999998754321 12333566766543332333345689999
Q ss_pred eCCceEEEEcCChh
Q 000085 1552 VDRSNFFFDFGSTE 1565 (2342)
Q Consensus 1552 ~~~~s~f~~F~~~~ 1565 (2342)
.++.+|-|.|.++.
T Consensus 70 ~~~~~~~F~Ftn~~ 83 (108)
T 1pfj_A 70 HAGDTTNFHFSNES 83 (108)
T ss_dssp SSSCEEEEECCCSS
T ss_pred eCCCceEEEEcCcH
Confidence 99999999999863
No 349
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=57.02 E-value=1.5e+02 Score=34.62 Aligned_cols=91 Identities=13% Similarity=0.013 Sum_probs=45.8
Q ss_pred CCCEEEEEeC-C-----CcEEEEECCCCeEEEE--EecCCcEEEEEecCCcEEEEEeCCC-----eEEEEEeCCceeeee
Q 000085 2131 DLGVVVSCSD-S-----SDLLLHSIRRGRLIRR--LVGVDAHAVSLSSEGVIMTWNKLQH-----TLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2131 Dg~lLaSGS~-D-----GtIrIWDLrTGklIrs--L~gh~vssLSfSpDG~IlVwdssdG-----sI~I~dlnG~~L~s~ 2197 (2342)
++.+++.|+. + ..+.+||+.+.+-... +........+..-++++++.+..++ .+.+|++....-...
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 227 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF 227 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence 5566667765 2 4688999887754332 1111111222334778888876543 477777754322211
Q ss_pred -cCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2198 -KLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2198 -~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
..+....-.+++. -+++.++.|+.
T Consensus 228 ~~~p~~r~~~~~~~-~~~~l~v~GG~ 252 (315)
T 4asc_A 228 EAFPQERSSLSLVS-LVGTLYAIGGF 252 (315)
T ss_dssp CCCSSCCBSCEEEE-ETTEEEEEEEE
T ss_pred CCCCCcccceeEEE-ECCEEEEECCc
Confidence 1111111112222 25677777763
No 350
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=56.67 E-value=2.8e+02 Score=37.25 Aligned_cols=30 Identities=0% Similarity=-0.140 Sum_probs=21.6
Q ss_pred EEcCCCCEEEEE-EcC----CcEEEEecCCcccce
Q 000085 2003 SITHDKEIITGG-HVD----GSIKLLTSDGAKTLE 2032 (2342)
Q Consensus 2003 afSpDGklLASG-S~D----GsIrVWDl~tgkll~ 2032 (2342)
+++||+++++.+ +.. ..++++|+.+++.+.
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~ 170 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK 170 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC
Confidence 488999866654 322 369999999987763
No 351
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=44.50 E-value=2.4e+02 Score=32.93 Aligned_cols=61 Identities=8% Similarity=0.064 Sum_probs=33.9
Q ss_pred CCCEEEEEeC------CCcEEEEECCCCeEEEEEe--cCCcEEEEEecCCcEEEEEeCC-----CeEEEEEeCC
Q 000085 2131 DLGVVVSCSD------SSDLLLHSIRRGRLIRRLV--GVDAHAVSLSSEGVIMTWNKLQ-----HTLSSFTLNG 2191 (2342)
Q Consensus 2131 Dg~lLaSGS~------DGtIrIWDLrTGklIrsL~--gh~vssLSfSpDG~IlVwdssd-----GsI~I~dlnG 2191 (2342)
++.+++.|+. -..+.+||+.+.+-...-. .......+..-++.+++.+..+ ..+.+|++..
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCC
Confidence 5666666664 2358899998876433211 1111112233477888887543 2466777654
No 352
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=41.08 E-value=55 Score=40.18 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=26.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 000085 2132 LGVVVSCSDSSDLLLHSIRRGRLIRRLVGV 2161 (2342)
Q Consensus 2132 g~lLaSGS~DGtIrIWDLrTGklIrsL~gh 2161 (2342)
+..++.++.||.|+-.|..+|+.+.++...
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~ 39 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE 39 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGG
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 347889999999999999999999988754
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=36.44 E-value=5.8e+02 Score=29.86 Aligned_cols=50 Identities=14% Similarity=0.184 Sum_probs=26.9
Q ss_pred CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 2017 DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
||.|+.|-....-.+..-......|..++...+ ..++- . ||.|..|-...
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCT
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCC
Confidence 777777764432111111111235777776543 23333 4 89999997654
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.28 E-value=1.4e+02 Score=41.53 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=32.0
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
..+.+++..++..++++-+.|+++|||++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45566778888889999999999999999999887653
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.35 E-value=9.9e+02 Score=33.09 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=34.4
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2121 REILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
..+.+++..++..++++-+.|+++++|++.+|+++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356777788888999999999999999999999998864
No 356
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=23.70 E-value=1.1e+03 Score=29.14 Aligned_cols=28 Identities=0% Similarity=0.068 Sum_probs=20.9
Q ss_pred EEEEEe-cCCCEEEEEeCCCcEEEEECCC
Q 000085 2124 LCCCVS-SDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2124 t~VafS-PDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
...++. .+|.++++--....|..|+..+
T Consensus 278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 278 IALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred ceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 345665 5677777777888999999875
No 357
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=22.88 E-value=1.1e+02 Score=40.05 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=47.7
Q ss_pred EEEcCCCCEEE-EEEcCCcEEEEecCCc------cc-------ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEec
Q 000085 2002 VSITHDKEIIT-GGHVDGSIKLLTSDGA------KT-------LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 2002 VafSpDGklLA-SGS~DGsIrVWDl~tg------kl-------l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl 2067 (2342)
+.++|||++++ +|--+.++.|+|++.. +. .....--. .-...+|.++|....|.--|..|..|++
T Consensus 328 v~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl-GPlHt~Fd~~G~aYTtlfidSqvvkWni 406 (638)
T 3sbq_A 328 CNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL-GPLHTTFDGRGNAYTTLFIDSQVVKWNM 406 (638)
T ss_dssp EEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS-CEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred eeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC-cccEEEECCCCceEeeeeecceEEEEec
Confidence 78899999655 4557889999998742 11 11222222 3466789999965566678999999999
Q ss_pred cCC
Q 000085 2068 HRA 2070 (2342)
Q Consensus 2068 ~tg 2070 (2342)
...
T Consensus 407 ~~a 409 (638)
T 3sbq_A 407 EEA 409 (638)
T ss_dssp HHH
T ss_pred cHH
Confidence 763
No 358
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=21.63 E-value=3.9e+02 Score=26.78 Aligned_cols=75 Identities=15% Similarity=0.013 Sum_probs=49.0
Q ss_pred EEEEEEeeEEEEEeCCCCCCCCCCccccccccceEeecc--ceeEEeeccccCcccEEEEEEeCCceEEEEcCChhhHHH
Q 000085 1492 GTFQVTTRRINFIVDNTESPEEGTSELRNQEKDRSWLMS--SLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRN 1569 (2342)
Q Consensus 1492 G~L~IT~~~LyF~vd~~~~~~~~~~~~~~~~k~~~~~~~--~I~~i~~Rr~~l~~~alEif~~~~~s~f~~F~~~~~~~~ 1569 (2342)
--|.+..+.|||+-+..... ....+.+. .+..+....+.-++.+++|.+.+++.|+|.=.+.++++.
T Consensus 23 rwfvL~~~~L~~yk~~~~~~-----------p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~~~~y~f~A~s~ee~~~ 91 (112)
T 3cxb_B 23 CFVVLSNGILYQYPDRTDVI-----------PLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAE 91 (112)
T ss_dssp EEEEEETTEEEEESSSSCCS-----------CSEEEETTC-CEEEEEECCCSSCTTEEEEEETTSCCEEEECSSHHHHHH
T ss_pred EEEEEECCEEEEECCCCCCC-----------ccceEEecCCEEEeeeccCCCCCCeEEEEEcCCCCEEEEEcCCHHHHHH
Confidence 34566778888875542211 11223333 223234455667889999999999999999988888887
Q ss_pred HHHHHHhc
Q 000085 1570 AYRAIVQA 1577 (2342)
Q Consensus 1570 ~~~~i~~~ 1577 (2342)
=++.|.+.
T Consensus 92 Wi~ai~~~ 99 (112)
T 3cxb_B 92 WMQHLCQA 99 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666543
No 359
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=21.18 E-value=3.8e+02 Score=35.39 Aligned_cols=110 Identities=10% Similarity=-0.016 Sum_probs=65.1
Q ss_pred CeEEEEecCCCCEEEEEe-CCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce-EEec
Q 000085 2040 PVTCLALSSDSNFLVTGS-QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI-HVLR 2117 (2342)
Q Consensus 2040 ~VtcLAfSPDG~~LaSGS-~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l-~~L~ 2117 (2342)
....+.++|||++++.++ .+.+|.|+|+........ +++. .....+ ....
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~--------------------------~k~~--~~~~~~~ae~e 375 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFA--------------------------GKLA--DPRDVIVGEPE 375 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHT--------------------------TCCS--CGGGGEEECCB
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhh--------------------------cccc--CcccceEeecc
Confidence 345678999999987655 588999999986311000 0000 000000 0111
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----------eEEEEEecCC-cEEEEE------ecCCcEEEEE
Q 000085 2118 GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG----------RLIRRLVGVD-AHAVSL------SSEGVIMTWN 2178 (2342)
Q Consensus 2118 GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG----------klIrsL~gh~-vssLSf------SpDG~IlVwd 2178 (2342)
-.-.....+|.++|....|---|..|.-|++... ..+..+.-|- .-.+.. .+||++++..
T Consensus 376 -~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 376 -LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp -CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred -CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence 1234566789999955556668999999999753 4566665442 223333 5788887765
Done!