Query 000086
Match_columns 2304
No_of_seqs 985 out of 7378
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 17:27:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0368 Acetyl-CoA carboxylase 100.0 0E+00 0E+00 4516.7 164.5 2146 22-2300 28-2196(2196)
2 PF08326 ACC_central: Acetyl-C 100.0 6E-128 1E-132 1261.4 0.5 678 755-1498 1-708 (708)
3 COG4770 Acetyl/propionyl-CoA c 100.0 4E-121 8E-126 1101.8 54.4 625 47-755 1-644 (645)
4 KOG0238 3-Methylcrotonyl-CoA c 100.0 2E-114 4E-119 1023.1 53.2 635 51-755 1-670 (670)
5 COG1038 PycA Pyruvate carboxyl 100.0 3E-96 7E-101 898.0 53.8 446 46-551 5-456 (1149)
6 KOG0369 Pyruvate carboxylase [ 100.0 1.7E-87 3.6E-92 803.9 46.2 441 49-552 34-480 (1176)
7 COG4799 Acetyl-CoA carboxylase 100.0 4.3E-88 9.3E-93 833.7 34.6 446 1593-2188 45-509 (526)
8 PRK08654 pyruvate carboxylase 100.0 1.4E-85 3E-90 840.6 51.2 483 47-597 1-495 (499)
9 COG0439 AccC Biotin carboxylas 100.0 9.9E-84 2.2E-88 798.2 45.1 442 47-554 1-446 (449)
10 TIGR01235 pyruv_carbox pyruvat 100.0 5.2E-82 1.1E-86 856.4 59.3 443 50-552 1-451 (1143)
11 PRK12999 pyruvate carboxylase; 100.0 9.3E-80 2E-84 839.3 61.7 448 45-552 2-455 (1146)
12 PRK07178 pyruvate carboxylase 100.0 8E-76 1.7E-80 750.3 50.8 462 47-576 1-468 (472)
13 PRK12833 acetyl-CoA carboxylas 100.0 6E-75 1.3E-79 741.4 50.2 446 45-556 2-451 (467)
14 PRK08463 acetyl-CoA carboxylas 100.0 1.7E-74 3.8E-79 738.6 51.1 446 47-558 1-450 (478)
15 PLN02820 3-methylcrotonyl-CoA 100.0 3.6E-73 7.8E-78 723.4 38.7 447 1594-2186 85-553 (569)
16 PF01039 Carboxyl_trans: Carbo 100.0 4E-74 8.6E-79 734.3 28.7 423 1622-2188 43-479 (493)
17 TIGR01117 mmdA methylmalonyl-C 100.0 2.1E-72 4.5E-77 715.5 39.9 416 1623-2186 69-494 (512)
18 PRK05586 biotin carboxylase; V 100.0 5E-71 1.1E-75 703.1 47.9 441 47-553 1-445 (447)
19 TIGR00514 accC acetyl-CoA carb 100.0 1.8E-69 3.9E-74 689.4 49.0 442 47-554 1-446 (449)
20 PRK08462 biotin carboxylase; V 100.0 1.1E-67 2.5E-72 672.6 49.6 440 46-553 2-445 (445)
21 PRK08591 acetyl-CoA carboxylas 100.0 2.7E-67 5.9E-72 670.3 50.1 443 47-555 1-447 (451)
22 KOG0540 3-Methylcrotonyl-CoA c 100.0 1.9E-68 4.1E-73 628.0 30.2 438 1595-2188 68-522 (536)
23 TIGR02712 urea_carbox urea car 100.0 8.2E-65 1.8E-69 696.5 56.7 439 48-552 1-443 (1201)
24 PRK06111 acetyl-CoA carboxylas 100.0 1.8E-58 3.8E-63 589.3 49.9 444 47-557 1-448 (450)
25 COG0777 AccD Acetyl-CoA carbox 100.0 2.6E-43 5.7E-48 398.9 15.0 254 1530-1868 23-281 (294)
26 PF02786 CPSase_L_D2: Carbamoy 100.0 1.2E-39 2.7E-44 374.9 22.6 205 172-397 1-209 (211)
27 CHL00174 accD acetyl-CoA carbo 100.0 3.8E-40 8.1E-45 387.4 18.1 261 1525-1868 28-293 (296)
28 TIGR01369 CPSaseII_lrg carbamo 100.0 1.1E-37 2.3E-42 430.0 40.0 377 45-516 3-401 (1050)
29 TIGR01142 purT phosphoribosylg 100.0 6.2E-37 1.3E-41 383.3 42.7 373 50-520 1-380 (380)
30 PLN02735 carbamoyl-phosphate s 100.0 3.1E-37 6.6E-42 423.7 37.1 307 47-398 573-906 (1102)
31 PLN02948 phosphoribosylaminoim 100.0 5.8E-36 1.2E-40 388.9 42.5 381 46-520 20-402 (577)
32 PLN02735 carbamoyl-phosphate s 100.0 1.3E-35 2.8E-40 407.8 41.9 309 45-399 20-352 (1102)
33 PRK09288 purT phosphoribosylgl 100.0 6.5E-35 1.4E-39 366.9 43.1 379 49-521 13-394 (395)
34 TIGR00515 accD acetyl-CoA carb 100.0 2.5E-37 5.5E-42 366.4 17.0 255 1528-1869 19-280 (285)
35 PRK05654 acetyl-CoA carboxylas 100.0 5.9E-37 1.3E-41 364.8 18.5 255 1528-1869 20-281 (292)
36 PRK06019 phosphoribosylaminoim 100.0 1.7E-34 3.8E-39 360.3 41.3 364 48-515 2-366 (372)
37 PRK05294 carB carbamoyl phosph 100.0 3.3E-34 7.2E-39 397.0 40.4 308 46-399 5-335 (1066)
38 TIGR01161 purK phosphoribosyla 100.0 1.1E-32 2.4E-37 341.9 40.2 293 50-397 1-294 (352)
39 PRK12815 carB carbamoyl phosph 100.0 7.5E-33 1.6E-37 382.3 41.0 308 46-399 5-334 (1068)
40 PRK07206 hypothetical protein; 100.0 2.2E-32 4.7E-37 346.4 36.9 381 47-512 1-403 (416)
41 TIGR01369 CPSaseII_lrg carbamo 100.0 1.8E-32 3.8E-37 378.6 34.5 327 48-422 554-911 (1050)
42 TIGR00877 purD phosphoribosyla 100.0 1.3E-31 2.9E-36 340.0 39.6 383 49-521 1-410 (423)
43 PRK00885 phosphoribosylamine-- 100.0 1.2E-31 2.5E-36 340.2 38.3 374 50-521 2-406 (420)
44 PLN02257 phosphoribosylamine-- 100.0 1.9E-31 4.1E-36 337.4 38.7 382 52-521 1-413 (434)
45 PRK06395 phosphoribosylamine-- 100.0 1.5E-31 3.4E-36 338.8 37.0 384 47-521 1-410 (435)
46 PRK12815 carB carbamoyl phosph 100.0 1.8E-31 3.9E-36 368.7 35.1 325 47-422 554-911 (1068)
47 PRK02186 argininosuccinate lya 100.0 9.9E-31 2.1E-35 357.3 41.8 376 48-520 2-395 (887)
48 PRK13789 phosphoribosylamine-- 100.0 1.7E-30 3.6E-35 328.6 39.0 381 48-521 4-414 (426)
49 PRK05294 carB carbamoyl phosph 100.0 8.8E-31 1.9E-35 363.1 38.2 305 47-398 553-871 (1066)
50 PRK13790 phosphoribosylamine-- 100.0 1.7E-30 3.7E-35 325.0 33.0 333 116-521 12-364 (379)
51 PRK12767 carbamoyl phosphate s 100.0 1.8E-30 3.9E-35 318.5 31.5 293 48-397 1-298 (326)
52 PRK05784 phosphoribosylamine-- 100.0 1.6E-28 3.4E-33 313.6 40.2 379 50-521 2-434 (486)
53 COG0458 CarB Carbamoylphosphat 100.0 1.4E-28 3E-33 296.7 35.0 307 50-399 7-321 (400)
54 COG0027 PurT Formate-dependent 100.0 1.1E-27 2.4E-32 274.8 33.7 373 49-521 13-394 (394)
55 COG0026 PurK Phosphoribosylami 100.0 6.5E-27 1.4E-31 279.2 37.8 296 48-398 1-297 (375)
56 PF15632 ATPgrasp_Ter: ATP-gra 100.0 1.2E-27 2.6E-32 289.7 26.2 289 53-398 3-310 (329)
57 PRK05724 acetyl-CoA carboxylas 100.0 3.5E-28 7.5E-33 290.2 20.5 213 1893-2189 67-288 (319)
58 TIGR00513 accA acetyl-CoA carb 100.0 1.9E-27 4.1E-32 283.6 22.3 211 1893-2188 67-287 (316)
59 PRK06524 biotin carboxylase-li 100.0 1.4E-26 3.1E-31 289.9 29.1 249 119-397 92-356 (493)
60 COG0151 PurD Phosphoribosylami 99.9 3.9E-25 8.5E-30 267.2 35.4 333 118-521 50-411 (428)
61 PRK07189 malonate decarboxylas 99.9 2.5E-27 5.3E-32 281.5 15.1 174 1622-1870 54-241 (301)
62 TIGR03133 malonate_beta malona 99.9 4.4E-27 9.4E-32 277.0 14.5 172 1623-1866 46-231 (274)
63 PRK12319 acetyl-CoA carboxylas 99.9 5.1E-26 1.1E-30 267.0 21.5 167 1895-2094 15-185 (256)
64 TIGR03134 malonate_gamma malon 99.9 9.6E-26 2.1E-30 262.2 22.5 183 1913-2176 5-192 (238)
65 PRK06849 hypothetical protein; 99.9 6.5E-26 1.4E-30 285.2 22.1 279 47-376 3-284 (389)
66 PLN03230 acetyl-coenzyme A car 99.9 7E-26 1.5E-30 273.8 19.6 200 1917-2189 149-358 (431)
67 CHL00198 accA acetyl-CoA carbo 99.9 1.1E-25 2.4E-30 268.4 20.4 210 1896-2189 72-291 (322)
68 PRK14569 D-alanyl-alanine synt 99.9 1.7E-24 3.7E-29 262.9 29.8 231 129-391 54-292 (296)
69 PRK01372 ddl D-alanine--D-alan 99.9 6.5E-24 1.4E-28 258.4 29.8 276 47-390 3-296 (304)
70 PRK01966 ddl D-alanyl-alanine 99.9 2.8E-24 6.1E-29 265.1 25.6 231 131-390 81-327 (333)
71 TIGR01205 D_ala_D_alaTIGR D-al 99.9 1.4E-23 3.1E-28 256.6 26.8 238 130-391 62-312 (315)
72 PRK14568 vanB D-alanine--D-lac 99.9 1.5E-23 3.2E-28 259.7 25.6 230 130-389 89-335 (343)
73 PF02785 Biotin_carb_C: Biotin 99.9 2.9E-25 6.3E-30 228.7 8.3 107 443-550 1-107 (107)
74 PRK14572 D-alanyl-alanine synt 99.9 4.2E-23 9E-28 256.0 28.3 238 130-390 87-341 (347)
75 PLN03229 acetyl-coenzyme A car 99.9 4.2E-24 9.1E-29 270.6 19.1 156 1916-2094 169-329 (762)
76 PRK14570 D-alanyl-alanine synt 99.9 4.8E-23 1E-27 256.1 26.9 240 130-390 86-342 (364)
77 smart00878 Biotin_carb_C Bioti 99.9 1.3E-24 2.9E-29 224.2 8.5 107 443-550 1-107 (107)
78 PRK05654 acetyl-CoA carboxylas 99.9 7.7E-23 1.7E-27 244.5 20.2 197 1890-2186 47-279 (292)
79 KOG0370 Multifunctional pyrimi 99.9 7.5E-23 1.6E-27 256.2 20.5 326 48-422 918-1272(1435)
80 PRK14571 D-alanyl-alanine synt 99.9 2.5E-21 5.5E-26 235.6 29.4 223 130-388 52-289 (299)
81 PRK14573 bifunctional D-alanyl 99.9 1.9E-21 4.2E-26 264.8 30.1 240 130-390 525-782 (809)
82 COG2232 Predicted ATP-dependen 99.9 2.4E-21 5.2E-26 224.8 25.0 345 48-516 11-371 (389)
83 TIGR00515 accD acetyl-CoA carb 99.9 6.8E-22 1.5E-26 235.4 19.2 200 1889-2186 45-278 (285)
84 KOG0237 Glycinamide ribonucleo 99.9 1.1E-19 2.5E-24 221.2 30.5 352 118-548 55-436 (788)
85 PF13535 ATP-grasp_4: ATP-gras 99.8 9.9E-21 2.2E-25 212.5 17.2 178 169-372 1-183 (184)
86 TIGR00768 rimK_fam alpha-L-glu 99.8 1E-19 2.2E-24 218.0 25.5 226 131-390 48-276 (277)
87 KOG0370 Multifunctional pyrimi 99.8 2E-21 4.4E-26 243.6 10.8 306 47-400 376-703 (1435)
88 COG0825 AccA Acetyl-CoA carbox 99.8 8.1E-21 1.7E-25 218.2 11.7 157 1916-2094 77-237 (317)
89 PRK14016 cyanophycin synthetas 99.8 1.1E-20 2.3E-25 253.0 14.1 312 8-390 87-470 (727)
90 PF00289 CPSase_L_chain: Carba 99.8 1.2E-20 2.6E-25 196.4 9.9 110 47-167 1-110 (110)
91 PRK13278 purP 5-formaminoimida 99.8 1.2E-18 2.6E-23 214.7 28.5 267 50-371 20-315 (358)
92 PRK10446 ribosomal protein S6 99.8 8.1E-19 1.7E-23 213.9 25.4 226 131-394 57-289 (300)
93 PRK13277 5-formaminoimidazole- 99.8 1.9E-18 4.2E-23 209.5 27.0 306 35-397 6-349 (366)
94 TIGR02144 LysX_arch Lysine bio 99.8 7.9E-19 1.7E-23 211.4 23.3 226 131-392 47-276 (280)
95 PF02222 ATP-grasp: ATP-grasp 99.8 2.7E-18 5.8E-23 192.3 17.2 167 180-376 1-169 (172)
96 TIGR03103 trio_acet_GNAT GNAT- 99.8 2.4E-18 5.3E-23 224.0 19.2 283 33-371 178-525 (547)
97 PRK05641 putative acetyl-CoA c 99.8 4.7E-18 1E-22 185.9 16.6 70 685-754 82-152 (153)
98 CHL00174 accD acetyl-CoA carbo 99.8 1.2E-17 2.7E-22 197.9 17.6 197 1889-2185 57-291 (296)
99 COG0777 AccD Acetyl-CoA carbox 99.7 6.6E-17 1.4E-21 185.2 17.7 197 1889-2185 47-279 (294)
100 PF07478 Dala_Dala_lig_C: D-al 99.7 6.6E-17 1.4E-21 186.4 17.7 186 179-390 1-201 (203)
101 COG1181 DdlA D-alanine-D-alani 99.7 1.7E-15 3.7E-20 184.6 27.2 237 130-390 60-312 (317)
102 PF01071 GARS_A: Phosphoribosy 99.7 1E-15 2.2E-20 173.3 18.3 167 171-369 1-190 (194)
103 COG3919 Predicted ATP-grasp en 99.7 6.4E-16 1.4E-20 176.9 14.9 299 50-395 5-314 (415)
104 COG0511 AccB Biotin carboxyl c 99.7 1.8E-16 4E-21 172.1 8.7 71 686-756 69-140 (140)
105 PF02655 ATP-grasp_3: ATP-gras 99.6 3.6E-16 7.8E-21 174.2 9.7 158 170-371 1-161 (161)
106 COG0189 RimK Glutathione synth 99.6 1.7E-14 3.6E-19 176.4 20.9 228 129-391 76-311 (318)
107 PLN02820 3-methylcrotonyl-CoA 99.6 7.5E-15 1.6E-19 189.8 16.3 151 1895-2084 80-245 (569)
108 TIGR02068 cya_phycin_syn cyano 99.6 1.8E-14 3.9E-19 197.0 17.4 310 8-392 86-471 (864)
109 TIGR03133 malonate_beta malona 99.6 2.6E-14 5.5E-19 169.6 15.9 145 1897-2086 6-179 (274)
110 PRK06549 acetyl-CoA carboxylas 99.6 1.8E-14 4E-19 153.5 13.0 124 628-754 4-129 (130)
111 PRK07189 malonate decarboxylas 99.6 2.7E-14 5.9E-19 170.9 15.1 148 1896-2086 14-188 (301)
112 PF08443 RimK: RimK-like ATP-g 99.5 4.8E-14 1.1E-18 161.3 15.1 185 170-390 1-189 (190)
113 PRK05889 putative acetyl-CoA c 99.5 4.2E-14 9E-19 136.7 9.1 68 688-755 3-71 (71)
114 PRK14042 pyruvate carboxylase 99.5 9.3E-14 2E-18 180.3 14.9 124 628-755 465-594 (596)
115 PRK09282 pyruvate carboxylase 99.5 3.2E-13 6.9E-18 176.8 15.1 122 607-756 467-592 (592)
116 PRK08225 acetyl-CoA carboxylas 99.4 2.6E-13 5.6E-18 130.8 8.8 68 688-755 2-70 (70)
117 PRK12319 acetyl-CoA carboxylas 99.4 9.4E-13 2E-17 155.8 15.1 158 1623-1852 42-213 (256)
118 PF00364 Biotin_lipoyl: Biotin 99.4 2.1E-13 4.6E-18 132.9 7.4 66 689-754 2-74 (74)
119 PRK06748 hypothetical protein; 99.4 4.8E-13 1E-17 131.9 9.3 69 689-757 6-76 (83)
120 PLN03229 acetyl-coenzyme A car 99.4 1.7E-12 3.7E-17 166.3 14.6 158 1623-1852 186-357 (762)
121 TIGR01117 mmdA methylmalonyl-C 99.4 1.9E-12 4E-17 167.3 15.1 199 1590-1869 278-496 (512)
122 PRK12458 glutathione synthetas 99.4 1E-11 2.2E-16 154.0 21.1 218 131-392 79-322 (338)
123 CHL00198 accA acetyl-CoA carbo 99.4 1.9E-12 4E-17 155.9 13.2 169 1612-1852 86-269 (322)
124 PF01039 Carboxyl_trans: Carbo 99.4 5.7E-12 1.2E-16 163.3 16.4 148 1897-2086 8-173 (493)
125 TIGR01435 glu_cys_lig_rel glut 99.4 1.2E-11 2.7E-16 163.5 19.4 198 162-389 465-734 (737)
126 TIGR01108 oadA oxaloacetate de 99.3 2.1E-12 4.6E-17 168.7 10.9 111 625-751 471-582 (582)
127 PRK02471 bifunctional glutamat 99.3 3.4E-11 7.3E-16 161.9 21.3 250 103-389 419-748 (752)
128 COG1821 Predicted ATP-utilizin 99.3 1.6E-11 3.5E-16 139.7 14.8 191 149-396 92-284 (307)
129 PRK14040 oxaloacetate decarbox 99.3 6.3E-12 1.4E-16 164.3 12.5 117 625-755 476-593 (593)
130 TIGR00513 accA acetyl-CoA carb 99.3 1.6E-11 3.4E-16 148.1 14.8 160 1622-1852 94-266 (316)
131 PRK07051 hypothetical protein; 99.3 8.5E-12 1.8E-16 123.5 8.5 68 688-755 4-79 (80)
132 PRK05724 acetyl-CoA carboxylas 99.3 3.9E-11 8.5E-16 144.9 15.2 158 1623-1852 95-266 (319)
133 TIGR01380 glut_syn glutathione 99.3 1.3E-10 2.8E-15 143.0 20.1 272 59-391 19-308 (312)
134 PLN03230 acetyl-coenzyme A car 99.3 3.9E-11 8.4E-16 147.1 14.7 170 1612-1852 153-336 (431)
135 TIGR00531 BCCP acetyl-CoA carb 99.2 1.5E-11 3.3E-16 136.2 8.8 69 687-755 80-156 (156)
136 COG4799 Acetyl-CoA carboxylase 99.2 2.3E-11 4.9E-16 153.6 10.5 150 1895-2086 41-205 (526)
137 PRK05246 glutathione synthetas 99.2 2.8E-10 6E-15 140.4 19.6 275 58-392 19-310 (316)
138 PLN02983 biotin carboxyl carri 99.2 2.7E-11 5.9E-16 140.2 8.8 69 688-756 198-274 (274)
139 PLN02941 inositol-tetrakisphos 99.2 2.7E-10 5.8E-15 139.6 17.9 176 155-369 91-305 (328)
140 PRK06302 acetyl-CoA carboxylas 99.1 7.8E-11 1.7E-15 130.5 8.8 69 687-755 79-155 (155)
141 cd06850 biotinyl_domain The bi 99.1 1.8E-10 3.8E-15 109.1 8.1 66 689-754 1-67 (67)
142 TIGR02291 rimK_rel_E_lig alpha 99.1 2.6E-09 5.6E-14 130.3 17.8 199 162-388 27-289 (317)
143 KOG0540 3-Methylcrotonyl-CoA c 99.1 3.5E-10 7.5E-15 136.9 10.1 161 1618-1852 332-506 (536)
144 COG1759 5-formaminoimidazole-4 99.0 5.2E-08 1.1E-12 115.0 24.9 277 35-372 7-319 (361)
145 TIGR02712 urea_carbox urea car 99.0 6.1E-10 1.3E-14 156.3 9.4 69 687-755 1132-1201(1201)
146 PLN02226 2-oxoglutarate dehydr 98.9 1.5E-09 3.3E-14 137.3 8.3 66 693-758 103-169 (463)
147 PRK14875 acetoin dehydrogenase 98.9 2.2E-09 4.8E-14 134.0 8.7 65 694-758 15-80 (371)
148 cd06663 Biotinyl_lipoyl_domain 98.9 3.6E-09 7.8E-14 102.7 8.0 60 695-754 13-73 (73)
149 PTZ00144 dihydrolipoamide succ 98.9 2.8E-09 6E-14 134.2 8.4 65 694-758 57-122 (418)
150 PRK05704 dihydrolipoamide succ 98.8 1.3E-08 2.9E-13 128.9 12.0 66 693-758 14-80 (407)
151 TIGR01016 sucCoAbeta succinyl- 98.7 1.5E-07 3.2E-12 119.6 17.0 147 172-341 4-189 (386)
152 PF06833 MdcE: Malonate decarb 98.7 2.3E-07 5.1E-12 107.5 16.3 148 1913-2094 2-155 (234)
153 COG0508 AceF Pyruvate/2-oxoglu 98.7 3E-08 6.6E-13 125.5 9.9 65 695-759 16-81 (404)
154 TIGR01347 sucB 2-oxoglutarate 98.7 6.3E-08 1.4E-12 122.6 12.1 65 694-758 13-78 (403)
155 PRK00696 sucC succinyl-CoA syn 98.7 3.3E-07 7.2E-12 116.4 17.2 105 172-299 4-125 (388)
156 PF14397 ATPgrasp_ST: Sugar-tr 98.6 1.3E-06 2.8E-11 106.6 18.4 193 162-370 16-260 (285)
157 PRK11854 aceF pyruvate dehydro 98.6 1E-07 2.2E-12 127.4 8.4 65 694-758 13-78 (633)
158 PRK11854 aceF pyruvate dehydro 98.6 9.8E-08 2.1E-12 127.5 8.3 66 693-758 216-282 (633)
159 PLN02528 2-oxoisovalerate dehy 98.5 3.6E-07 7.9E-12 116.4 12.5 64 695-758 12-76 (416)
160 TIGR03134 malonate_gamma malon 98.5 1.4E-06 3.1E-11 102.9 13.7 172 1625-1866 21-204 (238)
161 TIGR01348 PDHac_trf_long pyruv 98.4 2.6E-07 5.7E-12 121.4 7.9 65 694-758 128-193 (546)
162 TIGR02927 SucB_Actino 2-oxoglu 98.4 3.1E-07 6.8E-12 121.6 8.4 67 692-758 146-213 (590)
163 TIGR01348 PDHac_trf_long pyruv 98.4 5.3E-07 1.1E-11 118.6 8.3 68 692-759 10-78 (546)
164 PRK11855 dihydrolipoamide acet 98.3 8.5E-07 1.8E-11 117.1 8.3 64 694-757 131-195 (547)
165 PF14398 ATPgrasp_YheCD: YheC/ 98.3 1.2E-05 2.6E-10 97.1 16.6 180 153-370 5-235 (262)
166 cd06849 lipoyl_domain Lipoyl d 98.3 2.1E-06 4.5E-11 81.2 7.9 65 690-754 9-74 (74)
167 PRK11856 branched-chain alpha- 98.2 4.5E-06 9.7E-11 107.0 12.3 66 693-758 14-80 (411)
168 PRK11855 dihydrolipoamide acet 98.2 2.6E-06 5.7E-11 112.6 8.2 65 694-758 14-79 (547)
169 TIGR01349 PDHac_trf_mito pyruv 98.1 3.8E-06 8.2E-11 107.8 8.0 65 693-757 11-77 (435)
170 KOG0559 Dihydrolipoamide succi 98.1 2.1E-06 4.6E-11 102.2 4.7 62 695-756 86-148 (457)
171 PRK11892 pyruvate dehydrogenas 98.1 4.8E-06 1E-10 107.3 8.1 65 694-758 15-81 (464)
172 PLN02744 dihydrolipoyllysine-r 98.1 6.8E-06 1.5E-10 106.8 8.1 63 694-756 125-189 (539)
173 TIGR02927 SucB_Actino 2-oxoglu 97.9 1.2E-05 2.5E-10 107.0 7.4 66 692-757 13-79 (590)
174 PRK14046 malate--CoA ligase su 97.9 0.0002 4.3E-09 91.3 16.3 104 173-299 5-125 (392)
175 PF13549 ATP-grasp_5: ATP-gras 97.8 3.8E-05 8.2E-10 90.5 8.5 106 172-300 11-131 (222)
176 PRK05641 putative acetyl-CoA c 97.8 0.00018 4E-09 79.9 13.2 109 607-718 3-152 (153)
177 KOG0557 Dihydrolipoamide acety 97.8 4.5E-05 9.8E-10 95.0 8.2 64 695-758 52-117 (470)
178 PLN00124 succinyl-CoA ligase [ 97.7 0.00033 7.1E-09 89.6 15.2 101 172-296 31-158 (422)
179 PF08442 ATP-grasp_2: ATP-gras 97.7 0.00015 3.2E-09 84.4 11.0 100 173-295 4-119 (202)
180 PRK08184 benzoyl-CoA-dihydrodi 97.7 0.0069 1.5E-07 80.3 26.1 234 1779-2060 123-392 (550)
181 PRK13380 glycine cleavage syst 97.7 3.9E-05 8.5E-10 84.4 4.6 51 688-738 36-87 (144)
182 PLN02235 ATP citrate (pro-S)-l 97.6 0.00088 1.9E-08 84.9 14.9 101 174-296 9-130 (423)
183 TIGR03222 benzo_boxC benzoyl-C 97.6 0.017 3.8E-07 76.4 27.4 105 1971-2082 285-411 (546)
184 cd06848 GCS_H Glycine cleavage 97.4 0.00026 5.5E-09 73.1 5.8 49 690-738 23-72 (96)
185 cd07020 Clp_protease_NfeD_1 No 97.4 0.0018 3.8E-08 74.8 13.3 91 1978-2084 7-100 (187)
186 TIGR00998 8a0101 efflux pump m 97.4 0.00036 7.8E-09 87.1 8.1 34 687-720 42-75 (334)
187 PRK09783 copper/silver efflux 97.3 0.00057 1.2E-08 87.9 9.4 73 687-759 123-245 (409)
188 cd07015 Clp_protease_NfeD Nodu 97.3 0.0034 7.4E-08 71.5 14.4 91 1979-2085 8-101 (172)
189 COG0045 SucC Succinyl-CoA synt 97.3 0.0015 3.2E-08 80.9 12.1 103 173-298 5-121 (387)
190 COG0825 AccA Acetyl-CoA carbox 97.3 0.00031 6.7E-09 83.2 5.6 127 1620-1817 91-226 (317)
191 TIGR03077 not_gcvH glycine cle 97.3 0.00041 8.9E-09 73.1 5.9 47 692-738 26-73 (110)
192 PF03255 ACCA: Acetyl co-enzym 97.2 0.00029 6.2E-09 76.4 4.7 67 1916-1997 75-145 (145)
193 PRK10476 multidrug resistance 97.2 0.00053 1.1E-08 86.3 7.8 34 687-720 48-81 (346)
194 PRK01202 glycine cleavage syst 97.2 0.00071 1.5E-08 73.3 7.1 70 690-759 31-109 (127)
195 TIGR01730 RND_mfp RND family e 97.2 0.001 2.2E-08 82.3 9.2 72 687-758 26-169 (322)
196 PF02955 GSH-S_ATP: Prokaryoti 97.1 0.0011 2.4E-08 75.5 7.7 65 216-282 18-83 (173)
197 PRK10559 p-hydroxybenzoic acid 97.1 0.00098 2.1E-08 82.8 7.9 71 689-759 49-190 (310)
198 TIGR03309 matur_yqeB selenium- 97.1 0.0025 5.4E-08 75.7 10.5 67 687-758 164-230 (256)
199 PF14305 ATPgrasp_TupA: TupA-l 97.1 0.0095 2.1E-07 71.4 15.6 170 166-371 14-221 (239)
200 cd07021 Clp_protease_NfeD_like 97.0 0.0065 1.4E-07 69.7 13.4 91 1978-2085 7-98 (178)
201 PF05770 Ins134_P3_kin: Inosit 97.0 0.003 6.4E-08 77.7 10.2 178 156-369 78-290 (307)
202 PF13533 Biotin_lipoyl_2: Biot 97.0 0.00084 1.8E-08 61.1 4.1 37 688-724 3-39 (50)
203 PRK03598 putative efflux pump 96.9 0.0016 3.5E-08 81.4 8.0 33 688-720 44-76 (331)
204 KOG0558 Dihydrolipoamide trans 96.9 0.00078 1.7E-08 80.5 4.6 62 697-758 80-142 (474)
205 PRK00624 glycine cleavage syst 96.9 0.0014 3.1E-08 69.5 5.9 68 692-759 28-104 (114)
206 PRK15136 multidrug efflux syst 96.9 0.0019 4E-08 82.8 8.2 33 688-720 62-94 (390)
207 TIGR00527 gcvH glycine cleavag 96.8 0.0014 3.1E-08 71.0 5.1 48 691-738 31-79 (127)
208 PRK09578 periplasmic multidrug 96.7 0.0033 7.1E-08 80.4 7.8 73 688-760 64-210 (385)
209 cd07016 S14_ClpP_1 Caseinolyti 96.7 0.02 4.3E-07 64.5 13.1 90 1979-2086 7-99 (160)
210 PRK15030 multidrug efflux syst 96.6 0.0035 7.5E-08 80.5 7.9 72 688-759 66-211 (397)
211 PRK14512 ATP-dependent Clp pro 96.6 0.029 6.4E-07 65.4 14.5 100 1971-2087 23-125 (197)
212 PRK00277 clpP ATP-dependent Cl 96.6 0.036 7.9E-07 64.9 15.3 94 1977-2086 36-132 (200)
213 cd00394 Clp_protease_like Case 96.6 0.023 4.9E-07 63.9 13.2 91 1978-2086 5-98 (161)
214 COG1030 NfeD Membrane-bound se 96.5 0.029 6.3E-07 71.1 13.8 91 1978-2084 34-127 (436)
215 PRK12551 ATP-dependent Clp pro 96.4 0.038 8.2E-07 64.4 13.7 95 1976-2086 29-126 (196)
216 PRK11556 multidrug efflux syst 96.4 0.0057 1.2E-07 79.0 7.6 73 687-759 87-233 (415)
217 PRK11578 macrolide transporter 96.4 0.0062 1.3E-07 77.5 7.8 33 688-720 62-94 (370)
218 PRK09859 multidrug efflux syst 96.4 0.0057 1.2E-07 78.3 7.4 72 688-759 62-207 (385)
219 PRK12553 ATP-dependent Clp pro 96.3 0.032 7E-07 65.6 12.7 91 1978-2084 41-134 (207)
220 PRK12784 hypothetical protein; 96.3 0.011 2.4E-07 57.3 7.0 69 689-757 7-77 (84)
221 PRK14514 ATP-dependent Clp pro 96.3 0.047 1E-06 64.6 13.6 93 1978-2086 60-155 (221)
222 KOG0368 Acetyl-CoA carboxylase 96.3 1.1 2.4E-05 63.1 27.1 108 629-755 606-717 (2196)
223 TIGR00493 clpP ATP-dependent C 96.2 0.085 1.9E-06 61.4 15.1 95 1976-2086 30-127 (191)
224 PF02844 GARS_N: Phosphoribosy 96.2 0.02 4.3E-07 59.6 8.6 98 50-169 2-99 (100)
225 CHL00028 clpP ATP-dependent Cl 96.1 0.099 2.1E-06 61.2 15.1 95 1976-2086 34-131 (200)
226 PF02750 Synapsin_C: Synapsin, 96.1 0.085 1.9E-06 60.5 13.6 127 226-366 46-176 (203)
227 PRK14042 pyruvate carboxylase 95.9 0.037 7.9E-07 74.0 11.4 111 607-720 465-595 (596)
228 PF00574 CLP_protease: Clp pro 95.8 0.041 8.9E-07 63.2 10.2 157 1978-2173 22-181 (182)
229 cd07013 S14_ClpP Caseinolytic 95.7 0.15 3.3E-06 57.8 14.0 93 1978-2086 6-101 (162)
230 PF12700 HlyD_2: HlyD family s 95.7 0.0099 2.2E-07 73.7 4.7 34 686-720 20-53 (328)
231 cd07017 S14_ClpP_2 Caseinolyti 95.7 0.088 1.9E-06 60.1 11.9 94 1977-2086 14-110 (171)
232 PRK14513 ATP-dependent Clp pro 95.6 0.23 5.1E-06 58.2 15.0 94 1977-2086 32-128 (201)
233 cd07018 S49_SppA_67K_type Sign 95.5 0.27 5.8E-06 58.5 15.7 90 1980-2084 25-116 (222)
234 cd07020 Clp_protease_NfeD_1 No 95.5 0.031 6.6E-07 64.7 7.5 39 1780-1818 59-100 (187)
235 PF13533 Biotin_lipoyl_2: Biot 95.4 0.015 3.3E-07 53.0 3.7 34 725-758 3-37 (50)
236 TIGR02971 heterocyst_DevB ABC 95.3 0.034 7.3E-07 69.6 7.7 33 688-720 14-49 (327)
237 TIGR01843 type_I_hlyD type I s 95.3 0.039 8.4E-07 71.1 8.5 35 686-720 42-76 (423)
238 cd07014 S49_SppA Signal peptid 95.3 0.18 4E-06 57.8 13.0 88 1983-2084 21-110 (177)
239 PRK08225 acetyl-CoA carboxylas 95.3 0.035 7.6E-07 54.0 6.0 34 686-719 37-70 (70)
240 cd07022 S49_Sppa_36K_type Sign 95.1 0.33 7.1E-06 57.5 14.4 89 1979-2083 20-111 (214)
241 PF03133 TTL: Tubulin-tyrosine 95.1 0.1 2.2E-06 64.4 10.6 44 232-280 67-110 (292)
242 TIGR00706 SppA_dom signal pept 94.8 0.4 8.6E-06 56.5 13.9 89 1979-2085 9-101 (207)
243 PRK07051 hypothetical protein; 94.7 0.039 8.4E-07 55.3 4.6 36 684-719 44-79 (80)
244 cd07019 S49_SppA_1 Signal pept 94.7 0.29 6.2E-06 57.9 12.5 85 1985-2084 22-109 (211)
245 PF01597 GCV_H: Glycine cleava 94.6 0.053 1.1E-06 58.7 5.5 65 696-761 31-105 (122)
246 PRK05889 putative acetyl-CoA c 94.2 0.083 1.8E-06 51.6 5.6 34 686-719 38-71 (71)
247 PF13375 RnfC_N: RnfC Barrel s 94.2 0.095 2E-06 54.9 6.2 39 699-738 42-80 (101)
248 cd07023 S49_Sppa_N_C Signal pe 94.2 0.46 1E-05 55.9 12.7 93 1979-2085 9-106 (208)
249 PRK06549 acetyl-CoA carboxylas 94.0 0.18 3.9E-06 55.1 8.2 109 607-718 4-129 (130)
250 COG0740 ClpP Protease subunit 93.9 0.76 1.7E-05 53.6 13.4 159 1978-2175 33-194 (200)
251 COG0511 AccB Biotin carboxyl c 93.9 0.084 1.8E-06 58.5 5.5 34 686-719 106-139 (140)
252 cd06252 M14_ASTE_ASPA_like_2 A 93.9 0.17 3.6E-06 63.4 8.8 67 688-756 245-315 (316)
253 PRK14040 oxaloacetate decarbox 93.7 0.18 3.8E-06 67.9 8.9 110 605-718 477-592 (593)
254 COG0509 GcvH Glycine cleavage 93.6 0.086 1.9E-06 57.1 4.7 48 691-738 34-82 (131)
255 PRK12999 pyruvate carboxylase; 93.5 0.33 7.1E-06 70.0 11.8 103 650-756 1043-1146(1146)
256 PRK12552 ATP-dependent Clp pro 93.4 1 2.2E-05 53.6 13.5 96 1985-2087 53-151 (222)
257 cd06253 M14_ASTE_ASPA_like_3 A 93.4 0.19 4.1E-06 62.5 7.9 66 687-754 229-297 (298)
258 PF01972 SDH_sah: Serine dehyd 93.4 0.22 4.8E-06 60.0 8.1 88 1979-2084 70-157 (285)
259 cd06558 crotonase-like Crotona 93.2 1.3 2.8E-05 51.1 14.1 96 1979-2082 21-130 (195)
260 cd07021 Clp_protease_NfeD_like 93.2 0.18 4E-06 58.0 7.0 39 1780-1818 59-97 (178)
261 PF06973 DUF1297: Domain of un 93.2 0.53 1.2E-05 53.7 10.2 96 269-371 21-145 (188)
262 PF11379 DUF3182: Protein of u 93.1 0.6 1.3E-05 57.7 11.3 228 104-372 47-299 (355)
263 COG3608 Predicted deacylase [G 93.1 0.21 4.5E-06 62.0 7.5 67 687-755 256-325 (331)
264 cd06251 M14_ASTE_ASPA_like_1 A 93.0 0.25 5.3E-06 61.1 8.1 65 688-754 220-286 (287)
265 PRK06213 enoyl-CoA hydratase; 92.9 1.9 4.2E-05 51.6 15.3 93 1979-2080 24-127 (229)
266 TIGR02994 ectoine_eutE ectoine 92.9 0.27 5.9E-06 61.8 8.4 66 687-754 255-324 (325)
267 PF00378 ECH: Enoyl-CoA hydrat 92.7 2.7 5.9E-05 50.6 16.2 95 1978-2080 19-125 (245)
268 KOG0840 ATP-dependent Clp prot 92.4 0.85 1.8E-05 54.3 10.8 101 1970-2087 91-194 (275)
269 PRK07110 polyketide biosynthes 92.2 0.2 4.3E-06 60.6 5.8 88 1779-1868 94-196 (249)
270 PRK06748 hypothetical protein; 92.1 0.21 4.6E-06 50.5 4.9 34 687-720 42-75 (83)
271 TIGR01235 pyruv_carbox pyruvat 92.0 0.69 1.5E-05 66.7 11.5 125 627-755 1011-1143(1143)
272 cd06250 M14_PaAOTO_like An unc 91.9 0.37 8E-06 61.4 8.0 66 687-754 289-358 (359)
273 PRK05869 enoyl-CoA hydratase; 91.9 0.2 4.3E-06 59.7 5.2 86 1779-1866 99-199 (222)
274 cd06254 M14_ASTE_ASPA_like_4 A 91.8 0.31 6.6E-06 60.3 7.0 64 686-751 222-287 (288)
275 PRK06495 enoyl-CoA hydratase; 91.8 0.18 4E-06 61.2 4.9 86 1779-1866 97-194 (257)
276 PRK06563 enoyl-CoA hydratase; 91.8 0.2 4.3E-06 60.8 5.2 85 1779-1865 92-191 (255)
277 PRK06142 enoyl-CoA hydratase; 91.8 0.21 4.6E-06 61.1 5.5 86 1779-1865 109-209 (272)
278 PRK07112 polyketide biosynthes 91.6 0.25 5.4E-06 60.0 5.7 90 1779-1869 96-199 (255)
279 PF14403 CP_ATPgrasp_2: Circul 91.4 0.64 1.4E-05 60.3 9.4 192 39-280 176-386 (445)
280 PRK05674 gamma-carboxygeranoyl 91.3 0.2 4.4E-06 61.1 4.6 87 1780-1868 102-202 (265)
281 PRK07260 enoyl-CoA hydratase; 91.3 0.25 5.3E-06 60.0 5.2 84 1780-1865 99-197 (255)
282 PF00378 ECH: Enoyl-CoA hydrat 90.8 0.34 7.4E-06 58.3 5.9 85 1779-1865 90-189 (245)
283 cd06558 crotonase-like Crotona 90.8 0.25 5.5E-06 56.9 4.5 87 1779-1867 93-194 (195)
284 PRK07511 enoyl-CoA hydratase; 90.7 0.36 7.7E-06 58.8 5.8 86 1779-1866 98-198 (260)
285 PRK06127 enoyl-CoA hydratase; 90.6 0.28 6.2E-06 60.0 5.0 88 1779-1868 106-208 (269)
286 PF13437 HlyD_3: HlyD family s 90.5 0.29 6.3E-06 51.0 4.3 33 689-721 1-33 (105)
287 PRK08138 enoyl-CoA hydratase; 90.3 0.34 7.4E-06 59.0 5.2 86 1779-1866 98-198 (261)
288 PF00364 Biotin_lipoyl: Biotin 90.1 0.2 4.3E-06 49.5 2.4 35 684-718 40-74 (74)
289 PRK09120 p-hydroxycinnamoyl Co 90.1 0.36 7.9E-06 59.3 5.3 85 1779-1865 104-203 (275)
290 PRK07799 enoyl-CoA hydratase; 90.0 0.37 8E-06 58.8 5.2 86 1779-1866 100-200 (263)
291 PRK08140 enoyl-CoA hydratase; 90.0 0.32 6.9E-06 59.2 4.7 88 1779-1868 99-201 (262)
292 TIGR01929 menB naphthoate synt 90.0 0.25 5.4E-06 60.1 3.7 85 1779-1865 97-196 (259)
293 TIGR02280 PaaB1 phenylacetate 89.9 0.36 7.7E-06 58.7 5.0 87 1779-1867 93-194 (256)
294 PLN02664 enoyl-CoA hydratase/d 89.7 0.43 9.4E-06 58.6 5.5 74 1779-1853 111-199 (275)
295 PRK05862 enoyl-CoA hydratase; 89.7 0.36 7.8E-06 58.7 4.8 85 1779-1865 94-193 (257)
296 PLN02600 enoyl-CoA hydratase 89.6 0.41 9E-06 58.0 5.2 84 1780-1865 89-187 (251)
297 PLN02267 enoyl-CoA hydratase/i 89.6 0.37 8E-06 58.1 4.7 89 1779-1868 94-199 (239)
298 PRK06023 enoyl-CoA hydratase; 89.5 0.39 8.4E-06 58.2 4.9 86 1779-1866 97-197 (251)
299 PRK05981 enoyl-CoA hydratase; 89.5 0.41 8.8E-06 58.5 5.0 86 1779-1866 103-203 (266)
300 PRK06494 enoyl-CoA hydratase; 89.5 0.44 9.5E-06 58.0 5.3 88 1779-1868 94-196 (259)
301 PRK09674 enoyl-CoA hydratase-i 89.5 0.39 8.5E-06 58.3 4.8 85 1780-1866 93-192 (255)
302 PRK08788 enoyl-CoA hydratase; 89.3 19 0.0004 45.0 19.1 95 1979-2080 38-156 (287)
303 PRK06688 enoyl-CoA hydratase; 89.3 0.4 8.7E-06 58.2 4.8 88 1779-1868 96-198 (259)
304 COG0616 SppA Periplasmic serin 89.2 1.4 3.1E-05 55.3 9.5 172 1982-2176 81-265 (317)
305 PRK06190 enoyl-CoA hydratase; 89.2 0.5 1.1E-05 57.6 5.4 86 1779-1866 94-194 (258)
306 PRK03580 carnitinyl-CoA dehydr 89.1 5.4 0.00012 48.7 14.3 95 1979-2080 24-129 (261)
307 PLN02921 naphthoate synthase 89.0 0.53 1.2E-05 59.3 5.7 86 1779-1866 161-261 (327)
308 PRK09282 pyruvate carboxylase 89.0 0.83 1.8E-05 61.8 7.8 103 605-719 489-591 (592)
309 PRK08321 naphthoate synthase; 89.0 0.52 1.1E-05 58.8 5.6 86 1779-1866 135-236 (302)
310 PRK08252 enoyl-CoA hydratase; 89.0 0.5 1.1E-05 57.4 5.3 85 1779-1865 91-190 (254)
311 KOG1680 Enoyl-CoA hydratase [L 89.0 0.52 1.1E-05 56.8 5.2 81 1780-1869 128-230 (290)
312 PRK08150 enoyl-CoA hydratase; 88.9 7.5 0.00016 47.4 15.3 93 1979-2080 24-127 (255)
313 PRK09076 enoyl-CoA hydratase; 88.8 0.49 1.1E-05 57.6 5.1 83 1780-1864 96-193 (258)
314 PRK09245 enoyl-CoA hydratase; 88.8 0.44 9.5E-06 58.2 4.6 85 1779-1865 103-202 (266)
315 PRK07509 enoyl-CoA hydratase; 88.8 0.4 8.7E-06 58.4 4.3 86 1779-1865 102-202 (262)
316 KOG3895 Synaptic vesicle prote 88.8 1.2 2.5E-05 54.8 7.9 209 128-374 152-376 (488)
317 TIGR03189 dienoyl_CoA_hyt cycl 88.7 0.49 1.1E-05 57.4 4.9 75 1780-1855 90-178 (251)
318 PRK06143 enoyl-CoA hydratase; 88.7 0.53 1.1E-05 57.3 5.2 86 1779-1866 100-199 (256)
319 PRK06144 enoyl-CoA hydratase; 88.7 0.58 1.3E-05 57.1 5.6 85 1779-1865 102-202 (262)
320 PRK08150 enoyl-CoA hydratase; 88.7 0.56 1.2E-05 57.1 5.4 86 1780-1867 93-193 (255)
321 PRK06302 acetyl-CoA carboxylas 88.7 0.49 1.1E-05 53.4 4.5 41 679-719 115-155 (155)
322 PRK07854 enoyl-CoA hydratase; 88.7 19 0.00042 43.6 18.4 95 1979-2080 22-121 (243)
323 PRK07657 enoyl-CoA hydratase; 88.6 5.9 0.00013 48.4 14.1 95 1979-2080 26-132 (260)
324 PRK08139 enoyl-CoA hydratase; 88.6 0.67 1.4E-05 56.7 6.0 84 1780-1865 105-202 (266)
325 PLN02600 enoyl-CoA hydratase 88.5 9.4 0.0002 46.4 15.7 94 1979-2080 17-123 (251)
326 PLN02888 enoyl-CoA hydratase 88.5 0.53 1.2E-05 57.6 5.1 88 1779-1868 99-201 (265)
327 PRK05864 enoyl-CoA hydratase; 88.5 0.43 9.3E-06 58.7 4.3 86 1779-1866 109-210 (276)
328 PLN02664 enoyl-CoA hydratase/d 88.3 15 0.00033 45.3 17.5 96 1978-2080 29-146 (275)
329 PRK07657 enoyl-CoA hydratase; 88.3 0.51 1.1E-05 57.4 4.8 86 1779-1866 97-197 (260)
330 PRK08259 enoyl-CoA hydratase; 88.3 0.5 1.1E-05 57.4 4.6 86 1779-1866 93-193 (254)
331 PRK07827 enoyl-CoA hydratase; 88.2 0.47 1E-05 57.7 4.4 86 1780-1866 102-201 (260)
332 PLN03214 probable enoyl-CoA hy 88.2 24 0.00053 43.7 19.1 94 1979-2080 33-142 (278)
333 PRK07327 enoyl-CoA hydratase; 88.1 0.62 1.3E-05 57.1 5.3 86 1779-1866 106-206 (268)
334 TIGR00531 BCCP acetyl-CoA carb 88.1 0.6 1.3E-05 52.8 4.7 41 679-719 116-156 (156)
335 PRK06495 enoyl-CoA hydratase; 88.0 28 0.00061 42.5 19.3 98 1979-2083 25-135 (257)
336 PRK05617 3-hydroxyisobutyryl-C 87.9 22 0.00048 45.4 19.0 95 1979-2080 25-135 (342)
337 PRK08258 enoyl-CoA hydratase; 87.9 0.6 1.3E-05 57.4 5.0 87 1779-1867 113-215 (277)
338 TIGR03210 badI 2-ketocyclohexa 87.8 0.83 1.8E-05 55.6 6.1 84 1780-1865 95-193 (256)
339 PRK11423 methylmalonyl-CoA dec 87.8 0.48 1.1E-05 57.8 4.1 85 1779-1865 96-195 (261)
340 PRK07511 enoyl-CoA hydratase; 87.7 11 0.00024 46.0 15.7 95 1979-2080 25-133 (260)
341 cd06850 biotinyl_domain The bi 87.7 0.89 1.9E-05 42.9 5.0 31 688-718 37-67 (67)
342 PRK03580 carnitinyl-CoA dehydr 87.7 0.63 1.4E-05 56.7 5.0 87 1779-1867 94-195 (261)
343 PRK06127 enoyl-CoA hydratase; 87.7 9.4 0.0002 46.9 15.1 94 1979-2080 33-141 (269)
344 PRK07938 enoyl-CoA hydratase; 87.6 0.56 1.2E-05 56.8 4.5 85 1780-1866 95-191 (249)
345 PRK11423 methylmalonyl-CoA dec 87.5 8.6 0.00019 47.1 14.6 95 1979-2081 26-132 (261)
346 PRK05809 3-hydroxybutyryl-CoA 87.5 0.56 1.2E-05 57.1 4.4 84 1780-1865 98-196 (260)
347 PRK07396 dihydroxynaphthoic ac 87.5 0.68 1.5E-05 56.9 5.1 85 1779-1865 107-206 (273)
348 PRK08290 enoyl-CoA hydratase; 87.4 0.57 1.2E-05 58.0 4.4 88 1779-1868 118-218 (288)
349 TIGR02280 PaaB1 phenylacetate 87.4 6 0.00013 48.2 13.1 94 1979-2080 21-128 (256)
350 PRK10949 protease 4; Provision 87.4 2 4.4E-05 58.4 9.8 85 1985-2083 348-434 (618)
351 PRK08788 enoyl-CoA hydratase; 87.3 0.75 1.6E-05 57.0 5.4 88 1779-1868 121-223 (287)
352 PRK06210 enoyl-CoA hydratase; 87.3 0.54 1.2E-05 57.6 4.1 85 1779-1865 108-207 (272)
353 PRK08272 enoyl-CoA hydratase; 87.2 0.61 1.3E-05 58.1 4.6 86 1779-1866 127-224 (302)
354 PRK07658 enoyl-CoA hydratase; 87.0 0.65 1.4E-05 56.4 4.6 86 1779-1866 94-194 (257)
355 PF14243 DUF4343: Domain of un 87.0 6.2 0.00013 43.5 11.6 113 231-367 2-115 (130)
356 cd00210 PTS_IIA_glc PTS_IIA, P 86.8 1 2.2E-05 49.1 5.4 63 687-757 35-104 (124)
357 PRK07260 enoyl-CoA hydratase; 86.8 9.7 0.00021 46.4 14.4 95 1979-2080 24-133 (255)
358 PRK06142 enoyl-CoA hydratase; 86.8 21 0.00045 44.0 17.4 95 1979-2080 28-144 (272)
359 PRK12478 enoyl-CoA hydratase; 86.8 0.66 1.4E-05 57.8 4.5 85 1779-1866 112-209 (298)
360 PRK05980 enoyl-CoA hydratase; 86.7 0.59 1.3E-05 56.9 4.0 85 1779-1865 100-199 (260)
361 TIGR03189 dienoyl_CoA_hyt cycl 86.6 9.1 0.0002 46.6 14.0 95 1979-2080 22-124 (251)
362 PRK05995 enoyl-CoA hydratase; 86.5 0.95 2E-05 55.2 5.6 84 1779-1864 99-196 (262)
363 PRK06688 enoyl-CoA hydratase; 86.4 29 0.00062 42.4 18.2 95 1979-2080 27-131 (259)
364 PRK08138 enoyl-CoA hydratase; 86.4 26 0.00057 42.9 17.9 95 1979-2080 30-133 (261)
365 PRK06143 enoyl-CoA hydratase; 86.3 9.3 0.0002 46.7 13.9 95 1978-2080 28-135 (256)
366 PRK05869 enoyl-CoA hydratase; 86.3 8.7 0.00019 46.0 13.4 95 1979-2080 29-134 (222)
367 PRK06023 enoyl-CoA hydratase; 86.2 13 0.00028 45.3 15.0 96 1978-2080 27-132 (251)
368 TIGR01108 oadA oxaloacetate de 86.0 1.5 3.3E-05 59.1 7.6 105 605-715 472-582 (582)
369 TIGR00705 SppA_67K signal pept 85.9 5.5 0.00012 54.2 12.8 85 1985-2083 330-416 (584)
370 PRK07658 enoyl-CoA hydratase; 85.9 11 0.00023 46.0 14.2 95 1979-2080 23-129 (257)
371 COG1024 CaiD Enoyl-CoA hydrata 85.8 28 0.00061 42.5 17.7 105 1979-2086 27-146 (257)
372 PRK06144 enoyl-CoA hydratase; 85.7 11 0.00025 46.0 14.3 96 1979-2082 30-139 (262)
373 PRK05809 3-hydroxybutyryl-CoA 85.7 12 0.00027 45.6 14.6 95 1979-2080 26-132 (260)
374 PLN02851 3-hydroxyisobutyryl-C 85.6 28 0.00062 45.4 18.3 103 1979-2085 64-185 (407)
375 PRK08140 enoyl-CoA hydratase; 85.4 11 0.00024 46.0 14.1 95 1979-2080 26-134 (262)
376 PRK05995 enoyl-CoA hydratase; 85.4 14 0.00031 45.2 14.9 94 1979-2080 26-134 (262)
377 PF13437 HlyD_3: HlyD family s 85.2 1 2.2E-05 47.0 4.2 34 726-759 1-35 (105)
378 PF00529 HlyD: HlyD family sec 85.1 0.56 1.2E-05 57.7 2.7 33 725-757 2-35 (305)
379 TIGR03210 badI 2-ketocyclohexa 84.8 11 0.00023 46.2 13.4 95 1979-2080 24-129 (256)
380 cd07015 Clp_protease_NfeD Nodu 84.7 2 4.3E-05 49.5 6.7 39 1780-1818 59-100 (172)
381 PRK09076 enoyl-CoA hydratase; 84.6 13 0.00027 45.5 14.0 94 1979-2080 24-130 (258)
382 PRK05980 enoyl-CoA hydratase; 84.6 11 0.00024 46.1 13.4 95 1979-2080 25-135 (260)
383 PRK07112 polyketide biosynthes 84.5 16 0.00034 44.7 14.7 94 1979-2080 26-131 (255)
384 PRK08260 enoyl-CoA hydratase; 84.3 18 0.00038 45.2 15.3 97 1978-2081 25-149 (296)
385 PRK11778 putative inner membra 84.3 9.6 0.00021 48.2 12.9 70 2002-2085 125-194 (330)
386 COG1024 CaiD Enoyl-CoA hydrata 84.3 1.3 2.8E-05 53.9 5.4 89 1779-1868 98-201 (257)
387 TIGR03200 dearomat_oah 6-oxocy 84.3 47 0.001 42.6 18.8 95 1979-2081 50-160 (360)
388 PRK08139 enoyl-CoA hydratase; 84.2 17 0.00036 44.7 14.8 94 1979-2080 33-139 (266)
389 PRK07938 enoyl-CoA hydratase; 84.2 15 0.00032 44.8 14.2 95 1979-2080 23-129 (249)
390 PRK08258 enoyl-CoA hydratase; 84.1 20 0.00042 44.4 15.4 95 1979-2080 39-148 (277)
391 TIGR01936 nqrA NADH:ubiquinone 83.8 0.97 2.1E-05 59.1 4.1 47 692-739 34-80 (447)
392 PRK07327 enoyl-CoA hydratase; 83.7 15 0.00032 45.2 14.0 94 1979-2080 34-141 (268)
393 PLN03214 probable enoyl-CoA hy 83.5 1.2 2.6E-05 55.0 4.6 87 1779-1867 107-209 (278)
394 KOG0238 3-Methylcrotonyl-CoA c 83.3 4.6 0.0001 52.1 9.5 113 636-756 511-634 (670)
395 PLN02983 biotin carboxyl carri 83.3 1.3 2.7E-05 53.5 4.4 35 685-719 239-273 (274)
396 TIGR03794 NHPM_micro_HlyD NHPM 83.3 1.1 2.3E-05 58.5 4.4 32 688-719 59-90 (421)
397 PRK09120 p-hydroxycinnamoyl Co 83.1 13 0.00029 45.8 13.5 96 1978-2080 29-139 (275)
398 PRK05862 enoyl-CoA hydratase; 82.9 40 0.00087 41.2 17.3 95 1979-2080 26-129 (257)
399 PLN02226 2-oxoglutarate dehydr 82.8 1.7 3.8E-05 56.8 5.8 46 675-720 122-167 (463)
400 cd06255 M14_ASTE_ASPA_like_5 A 82.7 2.8 6.1E-05 52.2 7.4 50 688-738 232-283 (293)
401 PRK05674 gamma-carboxygeranoyl 82.7 14 0.00031 45.3 13.4 95 1979-2080 28-136 (265)
402 PRK05981 enoyl-CoA hydratase; 82.6 16 0.00034 44.9 13.7 98 1978-2083 25-141 (266)
403 PF06849 DUF1246: Protein of u 82.6 0.82 1.8E-05 49.2 2.3 115 57-189 6-121 (124)
404 PRK09439 PTS system glucose-sp 82.4 2.5 5.3E-05 48.5 6.2 71 683-757 16-126 (169)
405 PF13380 CoA_binding_2: CoA bi 82.4 2.5 5.4E-05 45.5 5.9 106 49-166 1-112 (116)
406 PRK14875 acetoin dehydrogenase 82.3 1.8 3.9E-05 54.6 5.7 36 687-722 45-80 (371)
407 PF09891 DUF2118: Uncharacteri 82.1 1.3 2.9E-05 49.5 3.7 50 689-738 82-132 (150)
408 cd07019 S49_SppA_1 Signal pept 81.8 4.4 9.5E-05 48.0 8.3 38 1780-1817 71-108 (211)
409 PRK05352 Na(+)-translocating N 81.6 1.3 2.9E-05 57.9 4.2 45 694-739 37-81 (448)
410 PRK09674 enoyl-CoA hydratase-i 81.6 18 0.0004 44.0 13.7 95 1978-2080 23-127 (255)
411 PLN02988 3-hydroxyisobutyryl-C 81.6 56 0.0012 42.5 18.6 94 1979-2079 31-139 (381)
412 PRK07468 enoyl-CoA hydratase; 81.5 22 0.00048 43.6 14.4 94 1979-2080 27-135 (262)
413 PRK07110 polyketide biosynthes 81.4 12 0.00027 45.4 12.1 95 1979-2080 27-129 (249)
414 PF02571 CbiJ: Precorrin-6x re 81.3 11 0.00024 46.0 11.6 143 49-259 1-146 (249)
415 PLN02888 enoyl-CoA hydratase 81.3 23 0.00049 43.6 14.4 94 1979-2080 32-134 (265)
416 cd06663 Biotinyl_lipoyl_domain 81.0 1.9 4.1E-05 42.1 4.0 32 687-718 42-73 (73)
417 PRK06190 enoyl-CoA hydratase; 80.9 74 0.0016 39.1 18.5 95 1978-2080 25-129 (258)
418 KOG0559 Dihydrolipoamide succi 80.1 1.3 2.8E-05 54.6 3.1 39 683-721 111-149 (457)
419 PRK06563 enoyl-CoA hydratase; 80.1 29 0.00062 42.4 14.7 95 1979-2080 21-127 (255)
420 TIGR00715 precor6x_red precorr 79.7 5.9 0.00013 48.5 8.5 68 50-136 2-70 (256)
421 cd07014 S49_SppA Signal peptid 79.4 1.8 3.9E-05 49.7 3.9 39 1780-1818 72-110 (177)
422 PRK08057 cobalt-precorrin-6x r 79.3 5.8 0.00013 48.3 8.2 71 47-137 1-71 (248)
423 PRK05870 enoyl-CoA hydratase; 79.0 1.5 3.2E-05 53.3 3.1 34 1780-1813 96-129 (249)
424 cd00394 Clp_protease_like Case 78.9 4.7 0.0001 45.3 7.0 39 1780-1818 58-96 (161)
425 PLN02267 enoyl-CoA hydratase/i 78.9 36 0.00079 41.2 14.9 81 1980-2061 22-116 (239)
426 PRK07854 enoyl-CoA hydratase; 78.8 1.6 3.5E-05 52.7 3.4 84 1780-1865 87-185 (243)
427 PRK07396 dihydroxynaphthoic ac 78.6 23 0.0005 43.7 13.4 97 1979-2083 35-145 (273)
428 TIGR01929 menB naphthoate synt 78.6 26 0.00057 42.8 13.7 95 1979-2081 25-133 (259)
429 PRK08260 enoyl-CoA hydratase; 78.5 1.6 3.4E-05 54.4 3.3 84 1779-1864 113-211 (296)
430 PRK07659 enoyl-CoA hydratase; 78.3 22 0.00047 43.5 12.9 94 1979-2080 28-133 (260)
431 PRK11556 multidrug efflux syst 77.7 2.7 6E-05 54.7 5.3 59 698-757 62-121 (415)
432 TIGR00830 PTBA PTS system, glu 77.6 3.7 7.9E-05 44.7 5.2 64 690-757 1-104 (121)
433 PF05896 NQRA: Na(+)-transloca 77.5 3 6.4E-05 50.6 5.0 47 691-740 33-81 (257)
434 PRK07468 enoyl-CoA hydratase; 77.5 1.7 3.7E-05 53.0 3.2 33 1780-1812 101-133 (262)
435 PLN02851 3-hydroxyisobutyryl-C 77.3 2.1 4.6E-05 55.4 4.0 86 1780-1868 139-238 (407)
436 PRK11578 macrolide transporter 77.2 3.5 7.7E-05 52.8 6.0 59 697-756 35-94 (370)
437 TIGR00998 8a0101 efflux pump m 77.0 2.5 5.5E-05 53.1 4.5 34 687-720 204-237 (334)
438 PRK05617 3-hydroxyisobutyryl-C 76.5 1.8 4E-05 54.9 3.1 38 1780-1817 101-138 (342)
439 COG4770 Acetyl/propionyl-CoA c 76.3 7.9 0.00017 51.0 8.5 33 687-719 612-644 (645)
440 PRK06072 enoyl-CoA hydratase; 76.3 2 4.4E-05 52.0 3.3 33 1780-1812 90-122 (248)
441 PRK09245 enoyl-CoA hydratase; 76.2 39 0.00084 41.5 14.3 95 1979-2080 25-138 (266)
442 cd07016 S14_ClpP_1 Caseinolyti 76.1 3.4 7.4E-05 46.6 4.8 39 1780-1818 59-97 (160)
443 PRK09578 periplasmic multidrug 76.1 3.4 7.3E-05 53.3 5.4 57 700-757 40-97 (385)
444 PF00529 HlyD: HlyD family sec 75.8 1.8 3.9E-05 53.3 2.7 31 689-719 3-33 (305)
445 TIGR01000 bacteriocin_acc bact 75.4 2.6 5.7E-05 55.6 4.2 31 689-719 61-91 (457)
446 PLN02157 3-hydroxyisobutyryl-C 75.3 1.6E+02 0.0034 38.8 19.8 82 1979-2061 59-155 (401)
447 PRK05864 enoyl-CoA hydratase; 74.9 35 0.00076 42.2 13.5 94 1979-2079 32-143 (276)
448 PRK09859 multidrug efflux syst 74.9 3.9 8.4E-05 52.8 5.5 59 698-757 36-95 (385)
449 PLN02874 3-hydroxyisobutyryl-C 74.8 81 0.0017 41.0 17.1 94 1979-2079 33-139 (379)
450 PRK07659 enoyl-CoA hydratase; 74.7 2.3 5.1E-05 51.8 3.3 73 1779-1852 98-185 (260)
451 PRK06213 enoyl-CoA hydratase; 74.4 2.5 5.4E-05 50.6 3.3 88 1779-1868 91-194 (229)
452 PRK10476 multidrug resistance 74.4 3.8 8.1E-05 52.1 5.1 50 704-757 32-82 (346)
453 KOG0016 Enoyl-CoA hydratase/is 74.4 2.7 5.9E-05 50.5 3.5 79 1780-1867 108-212 (266)
454 PTZ00144 dihydrolipoamide succ 74.2 3.1 6.7E-05 54.0 4.3 35 686-720 86-120 (418)
455 PRK15136 multidrug efflux syst 74.1 2.7 5.8E-05 54.4 3.8 33 687-719 215-247 (390)
456 PF06833 MdcE: Malonate decarb 74.0 17 0.00036 43.8 9.8 126 1639-1828 27-155 (234)
457 PRK08272 enoyl-CoA hydratase; 73.7 58 0.0013 40.8 15.2 98 1979-2083 32-165 (302)
458 TIGR02971 heterocyst_DevB ABC 73.7 3.5 7.5E-05 51.8 4.5 34 724-757 13-50 (327)
459 KOG2799 Succinyl-CoA synthetas 73.1 11 0.00025 47.0 8.3 70 172-264 26-107 (434)
460 TIGR01945 rnfC electron transp 72.6 3 6.6E-05 54.7 3.7 42 696-738 40-81 (435)
461 PRK07509 enoyl-CoA hydratase; 72.5 81 0.0018 38.6 15.7 97 1979-2082 25-139 (262)
462 PLN02157 3-hydroxyisobutyryl-C 72.3 4 8.7E-05 52.9 4.7 86 1780-1868 134-233 (401)
463 KOG0780 Signal recognition par 71.4 7.4 0.00016 49.3 6.3 59 1743-1828 216-279 (483)
464 PRK06494 enoyl-CoA hydratase; 70.6 49 0.0011 40.5 13.2 94 1979-2080 26-129 (259)
465 TIGR02437 FadB fatty oxidation 70.3 5.5 0.00012 55.4 5.6 84 1780-1865 103-201 (714)
466 PF04952 AstE_AspA: Succinylgl 69.8 8.9 0.00019 47.4 6.8 67 687-755 220-290 (292)
467 PLN02921 naphthoate synthase 69.7 37 0.0008 43.2 12.2 97 1979-2083 89-199 (327)
468 COG2190 NagE Phosphotransferas 69.1 9.1 0.0002 43.3 5.9 72 683-757 1-111 (156)
469 PRK11730 fadB multifunctional 68.9 5.7 0.00012 55.4 5.3 85 1779-1865 102-201 (715)
470 PRK05035 electron transport co 68.7 4 8.7E-05 56.2 3.7 51 687-738 34-87 (695)
471 PRK05704 dihydrolipoamide succ 68.7 8 0.00017 50.4 6.2 44 678-721 36-79 (407)
472 PRK10559 p-hydroxybenzoic acid 68.1 4.2 9.1E-05 51.0 3.5 33 725-757 48-81 (310)
473 TIGR01000 bacteriocin_acc bact 67.9 6.1 0.00013 52.2 5.1 33 725-757 60-93 (457)
474 PRK07799 enoyl-CoA hydratase; 67.8 96 0.0021 38.1 14.9 94 1979-2080 27-135 (263)
475 TIGR02876 spore_yqfD sporulati 67.7 18 0.00039 46.9 9.0 36 683-718 182-224 (382)
476 PF12700 HlyD_2: HlyD family s 67.5 4.1 8.9E-05 50.7 3.2 40 715-757 14-54 (328)
477 TIGR03200 dearomat_oah 6-oxocy 67.4 4.3 9.3E-05 51.6 3.3 40 1779-1818 124-163 (360)
478 PRK06210 enoyl-CoA hydratase; 67.3 79 0.0017 38.9 14.2 95 1979-2080 28-143 (272)
479 KOG2171 Karyopherin (importin) 67.1 5.7E+02 0.012 37.4 23.1 266 794-1084 106-412 (1075)
480 PRK11154 fadJ multifunctional 66.7 2E+02 0.0044 40.5 19.4 90 1979-2075 29-131 (708)
481 PRK04148 hypothetical protein; 66.7 13 0.00029 41.2 6.5 101 34-140 3-111 (134)
482 PF06898 YqfD: Putative stage 66.3 22 0.00047 46.2 9.4 35 683-717 185-226 (385)
483 TIGR02440 FadJ fatty oxidation 66.2 6.4 0.00014 54.7 5.0 84 1780-1865 97-197 (699)
484 PRK08290 enoyl-CoA hydratase; 65.7 55 0.0012 40.8 12.5 95 1979-2080 26-153 (288)
485 PRK15030 multidrug efflux syst 65.6 7.9 0.00017 50.2 5.4 44 713-757 55-99 (397)
486 cd07023 S49_Sppa_N_C Signal pe 65.3 5.9 0.00013 46.7 3.8 39 1780-1818 67-105 (208)
487 TIGR01730 RND_mfp RND family e 65.1 5.4 0.00012 49.5 3.6 33 724-756 26-59 (322)
488 PLN02874 3-hydroxyisobutyryl-C 64.8 4.9 0.00011 51.8 3.2 34 1780-1813 106-139 (379)
489 TIGR01843 type_I_hlyD type I s 64.7 7.6 0.00016 50.2 5.0 37 722-758 41-78 (423)
490 PRK08252 enoyl-CoA hydratase; 64.6 1.1E+02 0.0025 37.3 14.7 95 1979-2080 25-126 (254)
491 PF02843 GARS_C: Phosphoribosy 63.7 6.1 0.00013 41.0 3.1 33 489-521 49-81 (93)
492 PRK08321 naphthoate synthase; 63.1 1.9E+02 0.004 36.5 16.4 96 1979-2082 47-173 (302)
493 TIGR01347 sucB 2-oxoglutarate 62.7 13 0.00028 48.5 6.4 40 682-721 38-77 (403)
494 COG1748 LYS9 Saccharopine dehy 62.3 16 0.00035 47.2 7.1 117 48-192 1-124 (389)
495 PRK03598 putative efflux pump 62.2 7.9 0.00017 48.9 4.3 36 686-721 202-237 (331)
496 PRK11154 fadJ multifunctional 62.0 10 0.00022 53.0 5.6 87 1779-1867 101-204 (708)
497 TIGR03794 NHPM_micro_HlyD NHPM 61.6 10 0.00022 49.6 5.4 34 687-720 253-286 (421)
498 cd06849 lipoyl_domain Lipoyl d 61.1 9.9 0.00021 35.5 3.8 31 688-718 44-74 (74)
499 COG4656 RnfC Predicted NADH:ub 61.0 6.5 0.00014 51.6 3.2 39 699-739 45-83 (529)
500 PRK11730 fadB multifunctional 61.0 1.1E+02 0.0025 43.0 15.4 95 1979-2080 29-137 (715)
No 1
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=0 Score=4516.68 Aligned_cols=2146 Identities=52% Similarity=0.847 Sum_probs=2042.2
Q ss_pred CCCcCCCccchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhh
Q 000086 22 GAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRI 101 (2304)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ 101 (2304)
.+.+..+++..+.+.|||+++||+++|+||||||||++|+++|||+|+|.|++|++|+.|+||+|+||+|+.+|++|+||
T Consensus 28 ~~~~~~~~~~~s~v~efvk~~gG~rvI~kILIAnNGiAAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrm 107 (2196)
T KOG0368|consen 28 LGGNSSDDFTVSKVAEFVKRLGGHRVIKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRM 107 (2196)
T ss_pred ccCCcccccccccHHHHHHHhcCCceeEEEEEecccHHHHHHHHHHHHHHHHHhCCcceEEEEEecCHHHHHhhHHHhhh
Confidence 35667788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHH
Q 000086 102 ADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQ 181 (2304)
Q Consensus 102 ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq 181 (2304)
||+++.+||++|+|||+|+|.|+++|++..+||||+||||+||||++|+.|.+.||.|+|||..+|+.+|||+.+..+||
T Consensus 108 ADqyvevPgGtNnNNyANVdlIvdiAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQ 187 (2196)
T KOG0368|consen 108 ADQYVEVPGGTNNNNYANVDLIVDIAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQ 187 (2196)
T ss_pred hhheeeCCCCCCCCCcccHHHHHHHHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCcCCCCCCCccC---CCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHH
Q 000086 182 AANVPTLPWSGSHVKI---PPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRAL 258 (2304)
Q Consensus 182 ~aGVPtpp~s~~~~~~---~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a 258 (2304)
++||||.||+++|+++ +.+.++++||+|+|.++||.+++|++++|++||||+|||+++||||||||+|++.+|+..+
T Consensus 188 sa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~l 267 (2196)
T KOG0368|consen 188 SAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKAL 267 (2196)
T ss_pred hcCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHH
Confidence 9999999999999993 4456789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 000086 259 FKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAK 338 (2304)
Q Consensus 259 ~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlak 338 (2304)
|++++.|.||+|+|+|+.+.++||+|||+++|+||+++++++||||+||||||||||||+++.+++++++|+++|+|+++
T Consensus 268 f~qv~~EvPGSPIFlMK~a~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak 347 (2196)
T KOG0368|consen 268 FKQVQNEVPGSPIFLMKLADQARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAK 347 (2196)
T ss_pred HHHHHhhCCCCceeeeecccCcceeeeehhhhhcCCEeEeecccchHHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccc
Q 000086 339 CVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWR 418 (2304)
Q Consensus 339 alGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~ 418 (2304)
.+||++++||||+|.|++|+|||||+|||||+|||+|||++|||||++|||+|||+||++|||||+|||.+|+|
T Consensus 348 ~VGYvSAGTVEYLYsp~d~~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~G------ 421 (2196)
T KOG0368|consen 348 LVGYVSAGTVEYLYSPDDGEYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTG------ 421 (2196)
T ss_pred hhcceecceEEEEEecCCCcEEEEecCccccccCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEE
Q 000086 419 KTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFA 498 (2304)
Q Consensus 419 ~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via 498 (2304)
+++|+|+ .+..|.|+||||+||||+|||++||+|++|+|++++|+|+++||+||+|+.||+||+|+||||||||+
T Consensus 422 ---dS~idfe--~~~~p~pkgHciA~RITsEdPddgFkPSsG~v~eLnFrSssnvWgYFSV~~~g~iHeFadSQFGHiFa 496 (2196)
T KOG0368|consen 422 ---DSPIDFE--NAKLPCPKGHCIAARITSEDPDDGFKPSSGTVQELNFRSSSNVWGYFSVGNGGGIHEFADSQFGHIFA 496 (2196)
T ss_pred ---CCCCChh--hccCCCCCceEEEEEeeccCCCCCcCCCCCeeEEeccCCCCCeeEEEEecCCCceeeccccccceeee
Confidence 9999998 47889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhhcceEEecccccCHHHHHHhcCccccccccccchhhhhhhhhhhccCCCCchhHHHhhHHHHHHH
Q 000086 499 FGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASA 578 (2304)
Q Consensus 499 ~G~~reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 578 (2304)
+|+||++|+++|+.||++++|||+|+|+++||++||++++|++|+|+|+|||.+|++++++++|+++++++|||+.+++.
T Consensus 497 ~Ge~R~eAi~nMv~aLKelsIRgdFrT~VeYLI~LLet~dF~~N~i~TgWLD~~Ia~kv~~~~p~~~l~VvcgAa~~g~~ 576 (2196)
T KOG0368|consen 497 FGESRQEAIANMVVALKELSIRGDFRTTVEYLIDLLETEDFESNKIDTGWLDKRIAMKVRAERPDIMLAVVCGAAVKGSS 576 (2196)
T ss_pred ecCcHHHHHHHHHHHHHheeeccccCchHHHHHHHHHhhhhhhccCcchhHHHHHHHHhhccCCCcceeeehhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccccccccCCCCCCcccccceeeeEeecCeEEEEEEEeeCCCeEEEeeCCeEEEEEEEEecCCceEEEeCCee
Q 000086 579 SSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNS 658 (2304)
Q Consensus 579 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vel~~~g~~y~v~v~~~~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s 658 (2304)
.....+..|.++|++||+||++.+.+.++++|+++|.+|.++|++.+++.|++.+||+.++|.++.++||++++.+||++
T Consensus 577 ~~~~~~~~y~~~LerGQV~p~~~L~~~~~vdli~e~~kY~lkV~rss~~~y~l~mngs~~~v~v~~L~dggLli~~~Gks 656 (2196)
T KOG0368|consen 577 TSRTVFEKYEHSLERGQVPPKDFLLNTFDVDLIYEGNKYTLKVVRSSSGTYVLRMNGSEVTVGVHQLSDGGLLISLDGKS 656 (2196)
T ss_pred HHHHHHHHHHHHHhcCCCCChHHhhhcceeEEEecCcEEEEEEEecCCceEEEEEcCcEEEEEEEEecCCcEEEEECCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecccceEEEEeCceeccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 659 HVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 659 ~~v~~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
|++|++++.+++|+++|++||.|++++||++|+||.|||+++|+|++|+||++||+||+||+|||.|+|.|+++|+|+.+
T Consensus 657 ~t~y~keev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~~i 736 (2196)
T KOG0368|consen 657 YTIYWKEEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQLI 736 (2196)
T ss_pred EEEEEeeccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCccCCCCEEEEEecCCCCccccCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhhc
Q 000086 739 MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCL 818 (2304)
Q Consensus 739 ~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~p~~~~p~~~~~~~~~~~~~~~~~l~~il~GYd~~~~~~v~~l~~~L 818 (2304)
++||+.+++|++||.+++|+||+|.++.||+|.||.++.|...++|+|++|+..++.|.|||+|||+.+++++++|+++|
T Consensus 737 ~~~G~~i~aG~vlakL~lDdpSkv~~a~pf~G~~p~~~~p~~~g~k~~~k~~~~l~~l~nIL~Gy~~~l~~~~~~li~~L 816 (2196)
T KOG0368|consen 737 KQEGDAIEAGSVLAKLTLDDPSKVQHALPFHGSFPRLGSPAIEGNKPHQKFHSLLNRLENILAGYDPKLDETVQELIKVL 816 (2196)
T ss_pred cCCCCccCccceeEEeecCChhhhcccCCccccccccCCccccccchHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHhhcCCChhHHHHHHHHhhhhhhcccccCCCCchhhHHHHHHHHHhhccccccchhhHhhhhHHH
Q 000086 819 DSPELPLLQWQECMAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMS 898 (2304)
Q Consensus 819 ~dp~LP~~e~~~~ls~Ls~RiP~~L~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 898 (2304)
|||+|||+||++++|+|++|||+.|++.+..++++|+++. .+||+++|.++++.|+++++..+|..++.+++||++
T Consensus 817 r~p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~~~~~~~s~~----t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~ 892 (2196)
T KOG0368|consen 817 RDPELPYLEWQEHISALANRLPPNLDKSLESLVAKSASRI----TQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLK 892 (2196)
T ss_pred cCCCcChHHHHHHHHHHhccCChhHHHHHHHHHHHHhhhc----ccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHH
Confidence 9999999999999999999999999999999999988875 499999999999999999988999999999999999
Q ss_pred HHHhhcCChhhHHHHHHHHHHHHHHhhhcccC--CCcHHHHHHHHHHhhhhhHHHHHHHHHhcccchhhhHHHHHHHHHh
Q 000086 899 LVKSYEGGRESHARVIVQSLFEEYLSVEELFS--DQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLMEQL 976 (2304)
Q Consensus 899 ~~~~~~~G~~~~~~~~~~~ll~~y~~ve~~f~--~~~~~~~i~~lr~~~~~~~~~v~~~~~sh~~~~~k~~lv~~ll~~~ 976 (2304)
|+++|++|+++|++.++++||++|++||++|+ +..+|+||.+||++||+|+.+|+++++||+++.+||+||++||+++
T Consensus 893 l~~~y~~g~~~H~~~v~~~Lle~Yl~VEk~F~~~~~~~e~~i~~lr~~~~~d~~kVv~~i~SHs~i~~KN~Lv~~ll~~l 972 (2196)
T KOG0368|consen 893 LVSRYSGGLEAHAKEVVHDLLEEYLEVEKLFNGRDSHYEDVILRLREENKKDLKKVVDIILSHSQIKSKNKLVLALLDQL 972 (2196)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhhhHHHHHHHHHHcchhhhhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999 6689999999999999999999999999999999999999999999
Q ss_pred cCC---CChhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccchhHHHHHHHHHHh-hhccccCCCCCCCcCccchHHHH
Q 000086 977 VYP---NPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSEL-EMFTEDGESMDTPKRKSAIDERM 1052 (2304)
Q Consensus 977 ~~~---~~~~~~~~L~~l~~l~~~~~~~val~Ar~~l~~~~~ps~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 1052 (2304)
+.+ .+..|+++|.+|++|+++.+++||++|||||+++ ||++.|++|+++|+ +.+. ++|... +.+|.+.|
T Consensus 973 ~~~s~~~~~~f~~iL~~l~~L~~~~~~eVal~Ar~iLi~~--ps~~~R~n~~e~i~~s~i~-~~g~~~----~~~~~~~l 1045 (2196)
T KOG0368|consen 973 KPPSSKVSDEFRDILRKLTELNHTNTSEVALKARQILIQS--PSYELRHNQIESILKSSIV-MTGYQF----KKPCLEIL 1045 (2196)
T ss_pred cCCCCCCCHHHHHHHHHHHhhccchHHHHHHHHHHHHHhC--cchhhhHHHHHHHHHhhhh-cccCcc----cccchhHH
Confidence 863 3556999999999999999999999999999999 99999999999999 5544 455522 24799999
Q ss_pred HHhhcCCchhHHhhhhhcCCCCHHHHHHHHHHHHhhcccccccccccceeeeecceEEEEEEecccccccC-CCCCC---
Q 000086 1053 EDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKN-GPEDQ--- 1128 (2304)
Q Consensus 1053 ~~l~~s~~~~~d~L~~~f~~~~~~~~~~alevyvrR~Y~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~--- 1128 (2304)
++|++|++++||+|+.||+|+|++|+.+||||||||+|++|.++++...++....++++|+|.+++ |.+ +.++.
T Consensus 1046 ~~lidS~~~v~dvL~~fF~H~d~~v~~~alevYv~ray~ay~v~si~~~~~~~~~~v~~~~F~l~~--~~n~~~~~~~~n 1123 (2196)
T KOG0368|consen 1046 KELIDSNLSVFDVLPGFFYHSDPTVSSAALEVYVRRAYIAYVVKSIKHHQGAPSPCVVSWHFSLPS--RKNISLSPSELN 1123 (2196)
T ss_pred HhhccchhhHHHHHHHhhccccHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCceEEEEEEeccc--cccCCCCccccc
Confidence 999999999999999999999999999999999999999999993333333345588999999975 211 11111
Q ss_pred --CCCCcccccccccceeeEEEccCCCcHHHHHHHHHHhccc----CCCCccccCCCCcCCCCcEEEEEEeccccccccc
Q 000086 1129 --TPEQPLVEKHSERKWGAMVIIKSLQSFPDILSAALRETAH----SRNDSISKGSAQTASYGNMMHIALVGMNNQMSLL 1202 (2304)
Q Consensus 1129 --~~~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~ 1202 (2304)
++..+ ..+.+.|.|.|+.+++++++...+++++++... ..++.. +.+. .+..+|++||++.. .
T Consensus 1124 ~~~~v~~--~~s~~~r~G~mv~~~tf~d~~~~~~~~l~~~~~~~~~~~~~~a-~~~~-~s~~~~~~nv~~~~-------t 1192 (2196)
T KOG0368|consen 1124 ELSVVDS--GKSSPQRFGTMVAFRTFEDLVRILDEVLDCLKHSPREYPNPEA-DTSL-SSADINNVNVLLQS-------T 1192 (2196)
T ss_pred chhhhhc--cCCchhhcchhhhHHHHHHHHHHHHHHHHhhccCccccCCccc-cccc-ccchhhheeeeecc-------c
Confidence 11111 123357999999999999999999999999221 111111 1111 12338899998874 3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcccccCcccCCeeEEEEEEecCCCCCCeeEEecCCCccCCCccccccccCCCCcchhh
Q 000086 1203 QDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEPLLRHLEPPLSIYL 1282 (2304)
Q Consensus 1203 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vrrvt~~~~~~~~~~P~~~tfr~~~~~~~~~Ed~~~R~~~p~~a~~L 1282 (2304)
.+. +++++..++.+++++++. .|..++||||||++.+..+++|+||||. ++.|.||+.+||+||+++|||
T Consensus 1193 ~d~-e~~~~~~~L~~~l~e~~~-----~l~~~~v~rit~~~~~~~~~~pk~~tf~----~~~y~ed~~~rhlepal~~~L 1262 (2196)
T KOG0368|consen 1193 GDL-EDEELVSKLREILQEEER-----SLADHGVRRITFIIGREEGRYPKFYTFN----GDYYNEDRILRHLEPALAFQL 1262 (2196)
T ss_pred Cch-hhhHHHHHHHHHHHHHHH-----HHHhcccceEEEEeeeccccCcceeecc----ccccccccccccCChhHHHHH
Confidence 444 456899999999999999 8999999999999998888999999994 368999999999999999999
Q ss_pred hhccccCCCCceeeccCCCcceEEEeecCCCCceeEEEEEeecCCCCCCCCccCccccCCccccccccccchHHHHHHHH
Q 000086 1283 ELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLM 1362 (2304)
Q Consensus 1283 el~rl~nf~~i~~~p~~~~~~hly~~~~k~~~d~r~f~r~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~l~~~l 1362 (2304)
||+||+||+ |+++||.|++||+|.+++|..+|+|||+|++||+++++++.+++ || ++++++|++.++|
T Consensus 1263 EL~rl~n~~-i~~~p~~n~~~h~y~~~sk~~pdkrfF~R~ivR~~~~~d~~~~~---E~--------l~se~~r~l~~al 1330 (2196)
T KOG0368|consen 1263 ELDRLSNYN-ITSVPTDNHKIHLYSVTSKVSPDKRFFVRAIVRQGDLNDDKATA---EY--------LQSEANRLLLDAL 1330 (2196)
T ss_pred HHhhhhcCC-cccccccCcceEEEeeecccCchHHHHHHHHhhhhccccchhhH---HH--------HHHHHHHHHHHHH
Confidence 999999998 99999999999999999999999999999999999999999888 99 9999999999999
Q ss_pred HHHHHHhhcccccCCCCCccEEEEEEeccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHHHhhhhhhccceeEE
Q 000086 1363 AAMEELELNVHNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEW 1442 (2304)
Q Consensus 1363 d~le~~~~~~~~~~~~~~~nhifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~rl~~l~V~~~ 1442 (2304)
|+||++ ++ ....++||||||+|| .|++.++| ++++++++.|++|||+|||+|||++|
T Consensus 1331 d~leva-~~--~~~~~td~nhiFl~f---~~~~~i~p-----------------~~~ee~v~~~~~~~g~Rl~~lrv~~a 1387 (2196)
T KOG0368|consen 1331 DELEVA-NN--TDASKTDLNHIFLNF---VPVVIIDP-----------------SKLEEAVRGILKRIGKRLWRLRVTEA 1387 (2196)
T ss_pred HHhhhh-hh--cccccccccceeeec---ceeeccCH-----------------HHHHHHHHHHHHHHHHHHHHhhhcee
Confidence 999998 33 234478999999999 99999999 89999999999999999999999999
Q ss_pred EEEEEeeecC-CCCCceEEEEeCCCCcEEEEEEEEEeecCCCceEEEEEeecccccCCccccccccCchhhhhhhhhccc
Q 000086 1443 EVKLWMAYSG-QANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQSLGVLDQKRLLARR 1521 (2304)
Q Consensus 1443 Eir~~~~~~~-~~~~p~R~~~~n~sG~~~~~~~Y~E~~~~~~~~~~~~~~g~~g~~~~~~~~~pY~~~~~~~~kr~~a~~ 1521 (2304)
|+|+++++.. ...+|+|++++|.|||++++++|+|+++.+|.++ |+++|++||+||+||++|||+|||+|+||++||+
T Consensus 1388 ei~i~~~~~~t~~~~p~R~~i~NesGyv~~~e~y~Ev~~~~~~~i-~~s~gk~g~~h~~~istpY~~kd~lq~KR~~A~~ 1466 (2196)
T KOG0368|consen 1388 EIRIIIRDPGTGAPGPLRLVISNESGYVVTTEVYTEVKERNGSLI-FHSIGKQGPLHGRPISTPYPPKDWLQPKRLAARR 1466 (2196)
T ss_pred eEEEEEecCCCCCCcceEEEEEcccccEEEEEEEEeecccCccee-eeccCCCCcccccccCCCCCCchhhcHHHHHHHh
Confidence 9997776654 2356999999999999999999999999877777 9999999999999999999999999999999999
Q ss_pred CCccccccCCCCCCCccccCCCcccchhhhhcccCccCCCCcchhHHHHHHHHHHHhHhhhCC-CCCCCCcCcccccccc
Q 000086 1522 SNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSCSCEKCYLQAFETALEQSWASQFP-NMRPKDKALLKVTELK 1600 (2304)
Q Consensus 1522 ~~t~y~yd~p~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~el~ 1600 (2304)
+||||+||||+ ||+++....|++..+ ...+.+.++++..||+
T Consensus 1467 ~gTTYiYDFP~-------------------------------------~F~~a~~~~Wks~~~~~k~~~~~~~f~~~ELV 1509 (2196)
T KOG0368|consen 1467 MGTTYIYDFPE-------------------------------------MFRQAASKLWKSPSSGVKVKLWDDFFQVKELV 1509 (2196)
T ss_pred cCCeEEeecHH-------------------------------------HHHHHHHHhhcCCCcccCCCcchhhheeeeee
Confidence 99999999999 999999999997753 3457889999999999
Q ss_pred ccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCE
Q 000086 1601 FADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPL 1680 (2304)
Q Consensus 1601 ~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~ 1680 (2304)
+|+ +| .|.+++|.||.|+||||||.++++|||||+||+++|++||+||+.||||+.||+.|.++++|||++|||+
T Consensus 1510 ~de-~g----~L~~vnR~pG~N~~GMVAw~~~~~TpEyP~Gr~~iVIgNDiTfqiGSFGp~ED~lF~~aselAR~~~iPr 1584 (2196)
T KOG0368|consen 1510 LDE-NG----ELTEVNREPGLNSCGMVAWKLTVKTPEYPEGRDLIVIGNDVTFQIGSFGPREDLLFLAASELAREKGIPR 1584 (2196)
T ss_pred ecC-CC----cEEEeccCCCCCcceeEEEEEEecCCCCCCCceEEEEeccceEeccCCCChHHHHHHHHHHHHHhcCCCe
Confidence 998 88 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccc
Q 000086 1681 IYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGV 1760 (2304)
Q Consensus 1681 I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gv 1760 (2304)
||+++|||||||+||++.++|+|+|+|+.+|++||.|||+++++|+++.++++.+++..+.||.||+|++|+|+++||||
T Consensus 1585 IylaaNSGARIGlAeei~~lfkVaw~d~~~P~kgF~YlYlt~ed~~ri~~~~v~~e~~~~~GE~R~~I~~IiGkeeglGV 1664 (2196)
T KOG0368|consen 1585 IYLAANSGARIGLAEEIKPLFKVAWVDEDDPEKGFQYLYLTPEDYERIGSSVVHCEVVEESGEERLKIKAIIGKEEGIGV 1664 (2196)
T ss_pred EEEeccCccccccHHHHHHHheeeccCCCCcCCCceEEEECHHHHHHhhcccceeEEEeecCcceEEEEEEecccccccc
Confidence 99999999999999999999999999999999999999999999999987665544444899999999999999999999
Q ss_pred cccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhcccccccccccCccee
Q 000086 1761 ENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKI 1840 (2304)
Q Consensus 1761 e~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i 1840 (2304)
|||+|||+||||||+||++|||||+||||++|||||++|||+|+||+++++|||||++|||++||++|||||.||||+||
T Consensus 1665 EnL~GSGlIAGetSrAY~ei~T~t~VT~RsVGIGAYlvRLgqR~IQve~~~iILTGa~ALNklLGreVYTSN~QLGG~qI 1744 (2196)
T KOG0368|consen 1665 ENLRGSGLIAGETSRAYNEIFTITLVTGRSVGIGAYLARLGQRIIQVEDQHIILTGASALNKLLGREVYTSNNQLGGPQI 1744 (2196)
T ss_pred eeccccccccchhhhhhhccceEEEEecceeeHHHHHHHHHHHHHHhcCCceEEeCHHHHHHHhcccccccccccCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCCCccccC--CCCChHHHhhcccCCCCCcccccc
Q 000086 1841 MATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPE--NSCDPRAAICGFLDNNGKWIGGIF 1918 (2304)
Q Consensus 1841 ~~~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~~~~~P~--~~yD~r~~i~~~~d~~~~~~~gl~ 1918 (2304)
|+.||++|++|.||.+|+.+|++||||+|+.+++++|+.++.|+|+|+++++|+ .+|||||+|+|+.|+++ |++|||
T Consensus 1745 M~~NGVsHlTv~dDleGV~ki~~WlSY~Pa~~~~~~P~l~~~D~~dR~vef~p~~q~~yD~Rwli~G~~~~~~-~~~GlF 1823 (2196)
T KOG0368|consen 1745 MHRNGVSHLTVSDDLEGVAKILNWLSYLPAKRNSPVPFLEPKDPPDRDVEFVPSTQNPYDPRWLIAGKNDSTG-WLSGLF 1823 (2196)
T ss_pred eccCCceEEEecccHHHHHHHHHHHHhCCcccCCCCCccCCCCCcccceeccCCCCCCCCHHHHhcCCcCCCc-cccccc
Confidence 999999999999999999999999999999999999999999999999999999 99999999999999988 999999
Q ss_pred cCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhc
Q 000086 1919 DKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNR 1998 (2304)
Q Consensus 1919 D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~ 1998 (2304)
|+|||+|++.+||++||||||||||+||||||+||++++..+||||||++|+|+++++|||||||+||+||||+|.|||+
T Consensus 1824 Dk~SF~Eil~~WAktVV~GRArLgGIPvGVIavEtrtve~~vPADPan~dS~e~i~q~AGQVWyPdSAfKTaQAInDFNr 1903 (2196)
T KOG0368|consen 1824 DKGSFDEILSGWAKTVVTGRARLGGIPVGVIAVETRTVENIVPADPANLDSEEQITQEAGQVWYPDSAFKTAQAINDFNR 1903 (2196)
T ss_pred cCccHHHHHhHHhhHheecceecCCcceEEEEEEeeeeeeeccCCCCCCCcHhhhhhcCCceecCchHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEE
Q 000086 1999 EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKG 2078 (2304)
Q Consensus 1999 ~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~ 2078 (2304)
++|||++|+||||||||++||++++||+||.||++|++|++|+++||||.||+|||+|+|+||+||+|.|||||+.++|+
T Consensus 1904 EqLPLmIiAnwRGFSGGqkDMy~~VLkfGa~IVDaL~~YkQPv~vYIPp~gELRGGsWvVvD~tIn~~~memyAD~~sRg 1983 (2196)
T KOG0368|consen 1904 EQLPLMIIANWRGFSGGQKDMYDQVLKFGAYIVDALRQYKQPVLVYIPPMGELRGGSWVVVDPTINPDQMEMYADEESRG 1983 (2196)
T ss_pred ccCCeEEeecccccCccchHHHHHHHHHHHHHHHHHHHhCCceEEEcCcchhhcCceEEEEcCccCHHHHHHHhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccH
Q 000086 2079 NVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTS 2158 (2304)
Q Consensus 2079 gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~ 2158 (2304)
||++|+|+|+||||+++++++|.|+|+.|+.|+.++.++ .+++++++.++++|++||++|+|+|+|++++|||+|||+
T Consensus 1984 gVLEPeg~v~IKfRre~Lle~MrR~D~~y~~L~~~l~~~--~ls~~~~~~l~kqLk~Re~~L~piY~QisvqFAdlHDr~ 2061 (2196)
T KOG0368|consen 1984 GVLEPEGVVEIKFRREMLLEMMRRLDPTYIKLKSSLSEA--KLSPEDRKDLQKQLKEREEQLLPIYNQISVQFADLHDRS 2061 (2196)
T ss_pred ccccCCceEEEEeeHHHHHHHHHhcchhhhhhhhhcCcc--ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 999999999999999999999999999999999999987 788999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhhccccccccCCCccCchhHH
Q 000086 2159 LRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFF 2238 (2304)
Q Consensus 2159 ~rm~~~G~Id~vi~~~~tR~~~~~~L~r~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 2238 (2304)
+||++||||.++++|.++|+||||||||||+|+.++++|.++.+. +|..+.+++|++||..+. ++. .|+||+.|+
T Consensus 2062 ~RM~~kgVI~~~lew~~sRrffywrLrr~l~e~~~~~~i~~~~p~-lt~~~~~~~l~~w~~~~~-~~~---~~~~d~~v~ 2136 (2196)
T KOG0368|consen 2062 GRMKAKGVISKVLEWTESRRFFYWRLRRRLAEDQLLKEILSASPD-LTYKEKQAMLQKWFEESE-GAV---KWEDDQQVV 2136 (2196)
T ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHHHhc-ccc---ccccchhHH
Confidence 999999999999999999999999999999999999999999996 899999999999998765 223 399999999
Q ss_pred HhhcCchHHHHHHHHHhHHHHHHHHHHhcccCCcccchHHHHHHHHhcCCHHHHHHHHHHHH
Q 000086 2239 TWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEIS 2300 (2304)
Q Consensus 2239 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2300 (2304)
+|+|++.+|+++|++|+.++++++|+.+++++ ++.++ +||.++++++|+.+|+++++.|+
T Consensus 2137 ~w~e~~~~~~~~i~~l~~~~~~~~l~~~~~sd-~~~~~-~~l~~~~~~is~~~r~el~~~l~ 2196 (2196)
T KOG0368|consen 2137 TWIEEQSTIEKNIEELKETYLLDQLAKLINSD-RKGAI-DGLAELLNKISPKRREELVGALS 2196 (2196)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhC-hhhHH-HHHHHHHHhcChHHHHHHHHhhC
Confidence 99998888999999999999999999999997 88888 59999999999999999999874
No 2
>PF08326 ACC_central: Acetyl-CoA carboxylase, central region; InterPro: IPR013537 This region is found in various eukaryotic acetyl-CoA carboxylases, N-terminal to the catalytic domain (IPR000022 from INTERPRO). Enzymes containing this domain (6.4.1.2 from EC) are involved in the synthesis of long-chain fatty acids, as they catalyses the rate limiting step in this process. ; GO: 0003989 acetyl-CoA carboxylase activity, 0005524 ATP binding, 0006633 fatty acid biosynthetic process; PDB: 2DN8_A 2KCC_A 3COJ_H.
Probab=100.00 E-value=6.5e-128 Score=1261.40 Aligned_cols=678 Identities=36% Similarity=0.530 Sum_probs=3.5
Q ss_pred ecCCCCccccCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHhhcCCCCCchhHHHHHH
Q 000086 755 DLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASLNAARMILAGYEHN--IEEVVQNLLNCLDSPELPLLQWQECM 832 (2304)
Q Consensus 755 ~~~~~~~v~~~~~f~g~~p~~~~p~~~~~~~~~~~~~~~~~l~~il~GYd~~--~~~~v~~l~~~L~dp~LP~~e~~~~l 832 (2304)
++||||+|++++||+|.||.++.|...+.|+|++|+.+++.|+|||+||+++ ++++|++|+++|+||+|||+||+++|
T Consensus 1 ~LDDPS~V~~a~pF~G~lp~~~~~~~~g~k~~~~~~~~~~~l~niL~GY~~~~~~~~~v~~L~~~L~dp~LP~~E~~e~l 80 (708)
T PF08326_consen 1 ELDDPSKVKKAQPFEGTLPEMGPPQIEGEKPHQRFRAALEILHNILAGYDNQNIMNETVKELFEVLRDPELPYLEWQEVL 80 (708)
T ss_dssp E-S-S----S----------------------------------------------------------------------
T ss_pred CCCCcccCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999665 99999999999999999999999999
Q ss_pred HHhhcCCChhHHHHHHHHhhhhhhcccccCCCCchhhHHHHHHHHHhhccccccchhhHhhhhHHHHHHhhcCChhhHHH
Q 000086 833 AVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRESHAR 912 (2304)
Q Consensus 833 s~Ls~RiP~~L~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~G~~~~~~ 912 (2304)
|+|++|||++|+++|++++++|..+. .+||+++|+++++.|++ +.+ |+.|+++++||.+++++|++|+++|++
T Consensus 81 s~l~~RiP~~l~~~i~~~~~~~~~~~----~~FPa~~l~~~i~~~~~-~~~--r~~~~~~~~pL~~l~~~y~~G~~~h~~ 153 (708)
T PF08326_consen 81 SALSGRIPAKLEAQIRQLLERYKSRI----TSFPAKQLRKIIDSYLA-LEP--RAAFFATVAPLVDLVQRYRGGLKGHAK 153 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhccCCHHHHHHHHHHHHHHhhcc----CCCcHHHHHHHHHhhhc-cCc--HHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999999999997776664 44999999999999999 533 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCcHHHHHHHHHHhhhhhHHHHHHHHHhcccchhhhHHHHHHHHHhcCC---CChhHHHHHH
Q 000086 913 VIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLMEQLVYP---NPAAYRDKLI 989 (2304)
Q Consensus 913 ~~~~~ll~~y~~ve~~f~~~~~~~~i~~lr~~~~~~~~~v~~~~~sh~~~~~k~~lv~~ll~~~~~~---~~~~~~~~L~ 989 (2304)
+++.+||++|++||++|+++++|+||..||++||+|+++|+++++||++++.||+||++||+++..+ .+..++++|+
T Consensus 154 ~v~~~LL~~Yl~VE~~F~~~~~d~vI~~LR~~~k~dl~~Vv~~~~SH~~v~~Kn~Lil~lL~~l~~~~~~~~~~~~~~L~ 233 (708)
T PF08326_consen 154 SVVADLLEEYLSVEKLFQGKRYDDVILSLREENKDDLDKVVDIILSHSQVKSKNKLILALLDQLSEPNMPLTASLRDILK 233 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 9999999999999999999899999999999999999999999999999999999999999999755 4667999999
Q ss_pred HHHhccCCCchHHHHHHHHHHHHhccchhHHHHHHHHHHh-h--h-ccccCCCCCCCcCccchHHHHHHhhcCCchhHHh
Q 000086 990 RFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSEL-E--M-FTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDA 1065 (2304)
Q Consensus 990 ~l~~l~~~~~~~val~Ar~~l~~~~~ps~~~r~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~~~~l~~l~~s~~~~~d~ 1065 (2304)
+|++|++++|++|||+|||||++|++||+++|++||+++| + + .++.||+.++.++ +++.++|++||+|+++|||+
T Consensus 234 ~La~L~~~~~~~VAL~AR~iLi~~~lPS~e~R~~q~e~iL~s~~~v~~~~~g~~~~~~~-~~~~~~l~~Li~s~~~vfDv 312 (708)
T PF08326_consen 234 RLAELESRSYSKVALKAREILIQCQLPSYEERRNQMEHILRSLISVVESSYGEDFAKHR-EPSPEVLKELIDSPTTVFDV 312 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhhCCChhHHHHHHHHHHhcchhhhhhhccccccccc-cccHHHHHHHHcCCCcchhh
Confidence 9999999999999999999999999999999999999999 3 2 3455888776666 89999999999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHhhcccccccccccceeeeecc---eEEEEEEecccc--c----------ccCCCCCCCC
Q 000086 1066 LVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCG---LIASWEFLEEHI--E----------RKNGPEDQTP 1130 (2304)
Q Consensus 1066 L~~~f~~~~~~~~~~alevyvrR~Y~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~--~----------~~~~~~~~~~ 1130 (2304)
|+.||+|+|++|+.+||||||||+|++|.|+ +++|+..+ ++++|+|.+|+. + +..+.+++++
T Consensus 313 L~~fF~h~d~~v~~aAlEvYVRRaYraY~l~---~i~~~~~~~~~~~~~w~F~L~~~~~~~~~~~~~~~~r~~s~s~~~~ 389 (708)
T PF08326_consen 313 LPSFFDHSDPWVARAALEVYVRRAYRAYSLK---SIQHHELDDGPPIVSWQFMLPSSHPSRFNSSPSSSSRFASVSDLSY 389 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHhcCCChHHHHHHHHHHHHHhccceeee---eEEEEEcCCCceEEEEEEECCCccccccCccccccccccCCChhhh
Confidence 9999999999999999999999999999999 89988755 889999988762 1 4456677776
Q ss_pred CCcccccccccceeeEEEccCCCcHHHHHHHHHHh-cccCCCCccccCCCCcCCCCcEEEEEEecccccccccCCCCCHH
Q 000086 1131 EQPLVEKHSERKWGAMVIIKSLQSFPDILSAALRE-TAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDED 1209 (2304)
Q Consensus 1131 ~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~g~~~ 1209 (2304)
+.+. ....|+|+|+.|++++++.+.++++|+. +.... ..+..+...+++.||+||++++. .+.. +|+
T Consensus 390 ~~~~---~~~~R~Gvmv~~~~l~~l~~~~~~~L~~~~~~~~--~~~~~~~~~~~~~nVl~val~~~------~~~~-~d~ 457 (708)
T PF08326_consen 390 LIDS---SSSERTGVMVAFDSLEDLEEALPAALEEFPDADG--NTSTGSGSSSEPINVLNVALSDS------SGSD-DDE 457 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhh---cccccceEEEEeCcHHHHHHHHHHHHHhhccccc--ccccccCCCCCCCeEEEEEEecC------CCCc-CHH
Confidence 6553 2234999999999999999999999998 32210 00011122357899999999862 2222 577
Q ss_pred HHHHHHHHHHHHhhhcccccCcccCCeeEEEEEEecCCCCCCeeEEecCCCccCCCccccccccCCCCcchhhhhccccC
Q 000086 1210 QAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEPLLRHLEPPLSIYLELDKLKG 1289 (2304)
Q Consensus 1210 ~~~~~~~~~~~~~~~~~~~~~l~~~~vrrvt~~~~~~~~~~P~~~tfr~~~~~~~~~Ed~~~R~~~p~~a~~Lel~rl~n 1289 (2304)
++.++|+++|++++. .|..+|||||||+++++.+.+|+|||||++ ++|.||++|||+||++||||||+||+|
T Consensus 458 e~~~~l~~~l~~~~~-----~L~~~~vrrVt~~v~~~~~~~P~~fTFr~~---~~~~Ed~~~R~ieP~la~~LEL~RL~n 529 (708)
T PF08326_consen 458 ELAEKLEAILKENKS-----ELRAAGVRRVTFIVARDEGQYPKYFTFRAS---DEYEEDRLIRHIEPALAFQLELWRLSN 529 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHH-----HHHhcCceEEEEEEccCCCCCceEEEeCCC---CCcchhhHhccCCchhHHHhhhhhhhC
Confidence 899999999999998 999999999999999966789999999964 469999999999999999999999999
Q ss_pred CCCceeeccCCCcceEEEeecCC--CC-ceeEEEEEeecCCCCCCCCccCccccCCccccccccccchHHHHHHHHHHHH
Q 000086 1290 YDNIQYTLSRDRQWHLYTVVDKP--LP-IRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAME 1366 (2304)
Q Consensus 1290 f~~i~~~p~~~~~~hly~~~~k~--~~-d~r~f~r~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~l~~~ld~le 1366 (2304)
|+ |+++||.|++||||+|++|+ ++ |+|||+|++||++++.+++... +| +.+++||+|.+|||+||
T Consensus 530 f~-i~~~ps~~~~~HlY~a~~k~~~~~~d~R~F~RaiVR~~~~~~~~~~~---~~--------~~~e~er~l~~~Ld~Le 597 (708)
T PF08326_consen 530 FD-ITRLPSRNRQIHLYRAVAKKKQNPADRRFFARAIVRQGDLRRDESGA---EY--------LISEAERLLADALDALE 597 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC-cEEecCCCCceEEEEEeccCCCCCCceEEEEEEEeecCccccccchh---hh--------hhhhHHHHHHHHHHHHH
Confidence 99 99999999999999999998 66 9999999999999999888777 77 88999999999999999
Q ss_pred HHhhcccccCCCCCccEEEEEEeccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHHHhhhhhhccceeEEEEEE
Q 000086 1367 ELELNVHNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKL 1446 (2304)
Q Consensus 1367 ~~~~~~~~~~~~~~~nhifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~rl~~l~V~~~Eir~ 1446 (2304)
++..++ ..+++||||||||| ||+++++| .++++++++|++|||+|||||||++||||+
T Consensus 598 ~a~~~~--~~~~~d~Nhifln~---~p~~~~~~-----------------~~le~~~~~~~~r~g~RL~rLrV~~vEir~ 655 (708)
T PF08326_consen 598 VAQSNP--RVKRTDCNHIFLNF---WPELELDP-----------------EDLEAAVRGFVERYGRRLWRLRVTQVEIRI 655 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhccc--ccccccCceEEEEE---ecccCCCH-----------------HHHHHHHHHHHHHHHHHHHhcCccEEEEEE
Confidence 998773 24578999999999 99999998 999999999999999999999999999995
Q ss_pred Eeeec-CCCCCceEEEEeCCCCcEEEEEEEEEeecCCCceEEEEEee-cccccC
Q 000086 1447 WMAYS-GQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVA-VRGLLH 1498 (2304)
Q Consensus 1447 ~~~~~-~~~~~p~R~~~~n~sG~~~~~~~Y~E~~~~~~~~~~~~~~g-~~g~~~ 1498 (2304)
+++.. .....|+|++++|+|||++++++|+|++|++|+++ |+|+| ++||||
T Consensus 656 ~~~~~~~~~~~p~Rvvisn~sG~~~~v~~Y~E~~~~~g~~i-f~si~~~~G~~h 708 (708)
T PF08326_consen 656 RIRDPSTGAPIPVRVVISNPSGYVVKVEIYREVKDPKGEWI-FKSIGSKPGPLH 708 (708)
T ss_dssp ------------------------------------------------------
T ss_pred EeccCCCCCccceEEEEECCCCCeEEEEEEEEEECCCCCEE-EEECCCCCCCCC
Confidence 55522 22355999999999999999999999999997777 99999 699998
No 3
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=3.6e-121 Score=1101.78 Aligned_cols=625 Identities=31% Similarity=0.501 Sum_probs=528.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||||||++|||+||+||++|+.++ ++|+|.|+++.|+++||++|.+++.+..++|++.+.|+++
T Consensus 1 mf~KiLIANRGEIAcRVIRtar~lGi~tV-----------AVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~A 69 (645)
T COG4770 1 MFSKILIANRGEIACRVIRTARDLGIRTV-----------AVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDA 69 (645)
T ss_pred CcceEEEeccchhhHHHHHHHHHcCCceE-----------EEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHH
Confidence 78999999999999999999999998885 6777999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|++.++|||||||||+|||++|+++|++.|+.|||||+++++.+|||+.+|.++.++|||+.|.+.
T Consensus 70 a~~tGA~AIHPGYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~-------------- 135 (645)
T COG4770 70 ARRTGAQAIHPGYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYH-------------- 135 (645)
T ss_pred HHHhCcccccCCccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g~re 282 (2304)
+.+.+.+++..++++|||||+||++.||||||||+|++++|+.++|+.+++|+. .+.+|||+|++.+||
T Consensus 136 -------g~~qd~~~~~~~A~eiGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRH 208 (645)
T COG4770 136 -------GPIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRH 208 (645)
T ss_pred -------CcccCHHHHHHHHHhcCCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCce
Confidence 237899999999999999999999999999999999999999999999998864 468999999999999
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
+|+|+|+|+|||++++++||||+||||||+|||+|+|.++++++++|.++|+++++++||.|++||||+++. ++.||||
T Consensus 209 IEiQV~aD~HGNvv~LgERdCSlQRRhQKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~-~~~f~Fl 287 (645)
T COG4770 209 IEIQVFADQHGNVVHLGERDCSLQRRHQKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDA-DGNFYFL 287 (645)
T ss_pred EEEEEEecCCCCEEEeeccccchhhhcchhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcC-CCcEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999994 7789999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|||+|||+|||+||++||+||+++|+++|.|++|+. .|.+.+.+||+|
T Consensus 288 EMNTRLQVEHPVTE~iTGiDLVewqiRVA~GekL~~--------------------------------~Q~di~l~GhAi 335 (645)
T COG4770 288 EMNTRLQVEHPVTELITGIDLVEWQIRVASGEKLPF--------------------------------TQDDIPLNGHAI 335 (645)
T ss_pred EeecceeccccchhhhhhhHHHHHHHHHhcCCcCCc--------------------------------ccccccccceeE
Confidence 999999999999999999999999999999999974 456677789999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
++|||+|||.++|.|++|+|..+.+|..++||++.+|..|+.|++|||||++|+|+||.||++|+.+|.+||.++.|.|
T Consensus 336 E~RiyAEDp~r~FLPs~G~l~~~~~P~~~~vRvDsGV~~G~~Is~~YDpMiAKLi~~G~dR~eAl~rl~~AL~~~~v~G- 414 (645)
T COG4770 336 EARIYAEDPARGFLPSTGRLTRYRPPAGPGVRVDSGVREGDEISPFYDPMIAKLIVHGADREEALDRLRRALAEFEVEG- 414 (645)
T ss_pred EEEEeccCcccCccCCCceeEeecCCCCCceecccCcccCCccccccchHHHHHhhcCCCHHHHHHHHHHHHHhhEecC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhhhhhhhccCCCCchhHHHhhHHHHHHHhhhh--hhcccccccccCCCCCCc
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAA--MVSDYIGYLEKGQIPPKH 600 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~g~~~~~~ 600 (2304)
+.||++||+.++++|+|+.|+.+|+|+++.++..+. ..+....++.++++... ...+. ..+.+.+.. |..-
T Consensus 415 i~tn~~Fl~al~~~~~F~~g~~~T~~i~r~~~~~~~-~~~~~~~~~aa~~~~~~-~~~~~~~~~~pw~~~~--~w~~--- 487 (645)
T COG4770 415 IATNIPFLRALMADPRFRGGDLDTGFIAREIEDLFA-PAPASADALAAAALLAQ-PALERRAESDPWASLS--GWVV--- 487 (645)
T ss_pred ccccHHHHHHHhcCcccccCCCcceeeeeccccccc-CCCchhhhHHHHHhhhc-hhhhcccccCcccccC--Ccee---
Confidence 999999999999999999999999999999988773 22332233333222211 11111 011111000 1000
Q ss_pred ccccceeeeEeecCe-EEEEEEEee-CCCeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecccceEEEEeCce
Q 000086 601 ISLVNSQVSLNIEGS-KYRIDMVRR-GPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRT 678 (2304)
Q Consensus 601 ~~~~~~~vel~~~g~-~y~v~v~~~-~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t 678 (2304)
........+..++. .+.+.+... +...+.+..+. ......+.++|......+.....++++...|..
T Consensus 488 -~~~~~~~~~~~~~~~~~~v~l~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 556 (645)
T COG4770 488 -TGDAAELRVLIDGEERVEVRLPAREGRERFYVDSDW----------DPELASAALSGRKRAVRVARAGGGLTLFWGGGS 556 (645)
T ss_pred -ecceeeeeEEecCCcceEEEEeccCCcceeeeeccC----------CccceeEEecCccccceeeecCCceEEecCCcC
Confidence 00111111222222 333333211 11011111100 001234445555555555544555555554444
Q ss_pred eccc----------cCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCC
Q 000086 679 CLLQ----------NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQA 747 (2304)
Q Consensus 679 ~~~~----------~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~ 747 (2304)
..+. ....++.|+|||||+|+.+.|++|+.|.+||+|++|||||||++|+||.+|+|+.+ +++|++|..
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~ 636 (645)
T COG4770 557 PRIAELDKLGGAKVAAASSGELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAV 636 (645)
T ss_pred cccccccccccccccCCCCCceecCCCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCcccc
Confidence 3332 23446789999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCEEEEEe
Q 000086 748 GELIARLD 755 (2304)
Q Consensus 748 G~~La~l~ 755 (2304)
|++|++++
T Consensus 637 g~vLve~~ 644 (645)
T COG4770 637 GTVLVEFE 644 (645)
T ss_pred CceEEEec
Confidence 99999986
No 4
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-114 Score=1023.11 Aligned_cols=635 Identities=29% Similarity=0.437 Sum_probs=537.5
Q ss_pred EEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHc
Q 000086 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMT 130 (2304)
Q Consensus 51 ILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~ 130 (2304)
|||||||++|+|+||+||+||++++ ++++|.|.++.|+++||++|++++.+...+|++.+.|+++|++.
T Consensus 1 iLiANRGEIAcRVirTakkmGI~tV-----------AV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~t 69 (670)
T KOG0238|consen 1 ILIANRGEIACRVIRTAKKMGIRTV-----------AVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRT 69 (670)
T ss_pred CeeccccceeehhhhHHHHhCCeEE-----------EEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhc
Confidence 7999999999999999999998885 77779999999999999999999999999999999999999999
Q ss_pred CCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCccc
Q 000086 131 RVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2304)
Q Consensus 131 ~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~ 210 (2304)
+++||||||||+|||.+|++.|+++||.|+||++++++.+|||..+|++|+++|||+.|.+.
T Consensus 70 gaqaihPGYGFLSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~------------------ 131 (670)
T KOG0238|consen 70 GAQAIHPGYGFLSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYH------------------ 131 (670)
T ss_pred CCceecCCccccccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcc------------------
Confidence 99999999999999999999999999999999999999999999999999999999999654
Q ss_pred ccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccceeeEE
Q 000086 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g~reieVq 286 (2304)
+..+|.+++.+.+++||||||||++.||||||+|++.+++|+.+.|+.++.|+. .+.+|+|+|++++||+|||
T Consensus 132 ---g~~qs~e~~~~~a~eIgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQ 208 (670)
T KOG0238|consen 132 ---GEDQSDEEAKKVAREIGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQ 208 (670)
T ss_pred ---cccccHHHHHHHHHhcCCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEE
Confidence 126899999999999999999999999999999999999999999999987763 4689999999999999999
Q ss_pred EEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEecc
Q 000086 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2304)
Q Consensus 287 vl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2304)
+++|++||++++++||||+||||||+|||+|++.++++++.+|.++|+++++++||.|++||||++|+ .+.|||+|||+
T Consensus 209 v~gD~hGnav~l~ERdCSvQRRnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~-~~~FyFmEmNT 287 (670)
T KOG0238|consen 209 VFGDKHGNAVHLGERDCSVQRRNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDS-KDNFYFMEMNT 287 (670)
T ss_pred EEecCCCcEEEecccccchhhhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcC-CCcEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 78999999999
Q ss_pred CCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000086 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2304)
Q Consensus 367 RlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI 446 (2304)
|||+|||+|||+||+||+++||++|+|+||+. .|...+.+||+++|||
T Consensus 288 RLQVEHPvTEmItg~DLVewqiRvA~ge~lp~--------------------------------~q~ei~l~GhafE~Ri 335 (670)
T KOG0238|consen 288 RLQVEHPVTEMITGTDLVEWQIRVAAGEPLPL--------------------------------KQEEIPLNGHAFEARI 335 (670)
T ss_pred eeeecccchhhccchHHHHHHHHHhcCCCCCC--------------------------------CcceeeecceEEEEEE
Confidence 99999999999999999999999999999973 4566777899999999
Q ss_pred ccCCCCCCCCCCCCccccccccC-CCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEeccccc
Q 000086 447 TSEDPDDGFKPTSGKVQELSFKS-KPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRT 525 (2304)
Q Consensus 447 ~aEdp~~~f~P~~G~i~~l~~~s-~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v~t 525 (2304)
|||||..+|.|++|.+..+.+|. +|+||++.+|.+|+.|+.+|||+++++++||.||++|+.+|..||++..|+| +.|
T Consensus 336 yAEdp~~~f~P~~G~L~~~~~p~~~~~vRvdtgV~~g~~vs~~YDpmiaKlvvwg~dR~~Al~kl~~aL~~~~I~G-v~t 414 (670)
T KOG0238|consen 336 YAEDPYKGFLPSAGRLVYYSFPGHSPGVRVDTGVRSGDEVSIHYDPMIAKLVVWGKDREEALNKLKDALDNYVIRG-VPT 414 (670)
T ss_pred eecCCcccCCCCCccceeeccCCCCCCeeeecCcccCCcccccccchheeeeEecCCHHHHHHHHHHHHhhcEEec-Ccc
Confidence 99999999999999999999875 7899999999999999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHhcCccccccccccchhhhhhhhhhhccCC--CCc--hhHHHhhHHHHHHHhhhhhhcccccccccCCC---CC
Q 000086 526 NVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAER--PPW--YLSVVGGALYKASASSAAMVSDYIGYLEKGQI---PP 598 (2304)
Q Consensus 526 n~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~--~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~---~~ 598 (2304)
||+||++|+.+|+|..|+++|.||+++..+.+..+. |.. ..+.++.++.... ......|... .+++. +.
T Consensus 415 nI~~l~~i~~~~~F~~g~V~T~fi~~~~~elf~~~~~~~~~~~~~~a~a~~l~~~~---~~~a~~f~~~-n~~~~~v~~~ 490 (670)
T KOG0238|consen 415 NIDFLRDIISHPEFAKGNVSTKFIPEHQPELFAPESITPAEQLSQAAVASSLNAWA---SGRAYQFRLQ-NKDRASVFSS 490 (670)
T ss_pred chHHHHHHhcChhhhcCccccccchhcCccccCccccCcHHHHHHHHHHHHHHHHh---hchhhHHhhc-cCCccceecc
Confidence 999999999999999999999999999887776532 211 1222222222111 1111222211 11221 11
Q ss_pred Ccccc----cceeeeEeecCeEEEEEEEeeCCCeEEEeeCCeEEE-EEEE--E-ecCCceEEEeCCeeEEEEeeecccce
Q 000086 599 KHISL----VNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIE-AEIH--T-LRDGGLLMQLDGNSHVVYAEEEAAGT 670 (2304)
Q Consensus 599 ~~~~~----~~~~vel~~~g~~y~v~v~~~~~~~y~l~ing~~~~-V~v~--~-l~dg~l~v~~~G~s~~v~~~ee~~~~ 670 (2304)
..... ....+.+..+...+.+.+...+.+.|.+.++|+.+. +... . ...+.+.+..+|..+...........
T Consensus 491 ~~~~r~n~s~~~~~~~~~~e~~v~v~V~~~~~s~~si~~~~~~~~~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 570 (670)
T KOG0238|consen 491 SPPFRFNCSLVVKITLKTGENPVHVAVRFNSDSSLSIEVDGSSYLTIKGDINVPGPLLSISVDGEGNGYQGRVIILGDEI 570 (670)
T ss_pred CCceEEEEeeEEEEcccCCccceEEEEEECCCCeEEEEecCCceEeeccceecccccceEEEEeccCceEEEEEEeCCeE
Confidence 10000 111122222334577778888888999999888843 2221 1 12233444444444433333333333
Q ss_pred EEEEeCceecc--------------ccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEE
Q 000086 671 RLLIDGRTCLL--------------QNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQ 736 (2304)
Q Consensus 671 ~v~v~g~t~~~--------------~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~ 736 (2304)
.+...+....+ .++..++.+.|||||.|.+++|++||.|++||.+++|||||||+.++||.+|+|+
T Consensus 571 ~l~~~~~~~~ve~~~~k~l~~~~s~~~~~~s~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk 650 (670)
T KOG0238|consen 571 SLFSNEGVIKVEVLPPKYLSPQSSETKEDGSGVIVAPMPGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVK 650 (670)
T ss_pred EEEecCcceeEecCChHhhhhhhhhhccCCCCceecCCCCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCcee
Confidence 33333222211 2455678899999999999999999999999999999999999999999999999
Q ss_pred Ee-eCCCCccCCCCEEEEEe
Q 000086 737 FK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 737 ~i-~~~G~~v~~G~~La~l~ 755 (2304)
.+ ++.|++|..|++|.+++
T Consensus 651 ~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 651 DVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred eEeeecCcccCCCceEEEeC
Confidence 99 99999999999999874
No 5
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=3e-96 Score=897.96 Aligned_cols=446 Identities=34% Similarity=0.583 Sum_probs=414.9
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHHH
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLIV 124 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~-~~~~sY~dvd~Ii 124 (2304)
..|+||||||||++|+|++|+|.++|++| |+++..+| ..+.|...||++|.++.+ .....|+++|.|+
T Consensus 5 ~~~~KvLVANRgEIAIRvFRAa~ELgi~T---------VAIys~ED--~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII 73 (1149)
T COG1038 5 EKIKKVLVANRGEIAIRVFRAANELGIKT---------VAIYSEED--RLSLHRFKADESYLIGEGKGPVEAYLSIDEII 73 (1149)
T ss_pred hhhheeeeeccchhhHHHHHHHHhcCceE---------EEEeeccc--cchhhhccccceeeecCCCCchHHhccHHHHH
Confidence 46899999999999999999999998777 56666555 788899999999999854 4457999999999
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccc
Q 000086 125 EMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2304)
Q Consensus 125 ~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~ 204 (2304)
++|++.++|||||||||+|||++|++.|+++||.|+||+++.|+.+|||..++..|.++|||+.|.+.
T Consensus 74 ~iAk~~gaDaIhPGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~------------ 141 (1149)
T COG1038 74 RIAKRSGADAIHPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTD------------ 141 (1149)
T ss_pred HHHHHcCCCeecCCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999664
Q ss_pred ccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEecccc
Q 000086 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQS 280 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g~ 280 (2304)
.++.+.+++.++++++|||+|||++.||||+|||+|.++++|.++++++.+|+. ++.++||+|++++
T Consensus 142 ---------~~~~~~ee~~~fa~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~p 212 (1149)
T COG1038 142 ---------GPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENP 212 (1149)
T ss_pred ---------CCcccHHHHHHHHHhcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCc
Confidence 137889999999999999999999999999999999999999999999988864 5789999999999
Q ss_pred ceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 281 reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
+|+|||+++|.+||++++++||||+||||||++|.+|++.++++++++|++.|+++++.+||.|++||||+++ .+++||
T Consensus 213 kHIEVQiLgD~~GnvvHLfERDCSvQRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd-~~~~fy 291 (1149)
T COG1038 213 KHIEVQILGDTHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVD-EDGKFY 291 (1149)
T ss_pred ceeEEEEeecCCCCEEEEeecccchhhccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEc-CCCcEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 467999
Q ss_pred EEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceE
Q 000086 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGH 440 (2304)
Q Consensus 361 fLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~gh 440 (2304)
|||+|||+|+||.+||++||||++++|+.+|.|..|+. | .+.. ..|++....||
T Consensus 292 FIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G~~l~~-~-----------------------e~gl--p~q~dI~~~G~ 345 (1149)
T COG1038 292 FIEVNPRIQVEHTITEEITGIDIVKAQIHIAAGATLHT-P-----------------------ELGL--PQQKDIRTHGY 345 (1149)
T ss_pred EEEecCceeeEEeeeeeeechhHHHHHHHHhccCccCC-c-----------------------ccCC--Cccccccccce
Confidence 99999999999999999999999999999999999872 1 1111 14566888999
Q ss_pred EEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEE-eeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000086 441 CVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYF-SVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2304)
Q Consensus 441 ai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~-~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2304)
||+||||.|||.++|.|..|+|..++-.++-|||.+. .-..|..|.++|||++-++.+||.|.++|+++|.++|.|++|
T Consensus 346 AiQcRITTEDP~n~F~PDtGrI~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~~~~t~e~a~~km~RaL~EfrI 425 (1149)
T COG1038 346 AIQCRITTEDPENGFIPDTGRITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTCWGSTFEEAIRKMIRALREFRI 425 (1149)
T ss_pred EEEEEeeccCcccCCCCCCceEEEEecCCCceEEecCCcccccceeccccccceeeEeecCCCHHHHHHHHHHHHHHhee
Confidence 9999999999999999999999999888888999884 345788999999999999999999999999999999999999
Q ss_pred ecccccCHHHHHHhcCccccccccccchhhhh
Q 000086 520 RGEIRTNVDYTIDLLHASDYRENKIHTGWLDS 551 (2304)
Q Consensus 520 ~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~ 551 (2304)
+| |+|||+||.+++.||.|.+|+++|+|||.
T Consensus 426 rG-VkTNi~FL~~vl~h~~F~~g~y~T~FId~ 456 (1149)
T COG1038 426 RG-VKTNIPFLEAVLNHPDFRSGRYTTSFIDT 456 (1149)
T ss_pred cc-eecCcHHHHHHhcCcccccCcceeeeccC
Confidence 99 99999999999999999999999999995
No 6
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=1.7e-87 Score=803.91 Aligned_cols=441 Identities=34% Similarity=0.576 Sum_probs=410.4
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHHHHHH
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLIVEMA 127 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~-~~~~sY~dvd~Ii~iA 127 (2304)
+|||+||||++|+|+.|+|.+++.++ |+++. ..+..+.|..-||++|.++.+ +....|+.++.|+++|
T Consensus 34 ~kvlVANRgEIaIRvFRa~tEL~~~t---------vAiYs--eqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~ia 102 (1176)
T KOG0369|consen 34 NKVLVANRGEIAIRVFRAATELSMRT---------VAIYS--EQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIA 102 (1176)
T ss_pred ceeEEecCCcchhHHHHHHhhhcceE---------EEEEe--ccchhhhhhhccccceecccCCCchhhhhhHHHHHHHH
Confidence 79999999999999999999997776 45555 556899999999999998754 4556899999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+++++|+|||||||+||+.+|+++|.+.|+.|+||+++.+..+|||..+|.++-++|||+.|...
T Consensus 103 k~~~vdavHPGYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTp--------------- 167 (1176)
T KOG0369|consen 103 KKHNVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTP--------------- 167 (1176)
T ss_pred HHcCCCeecCCccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCC---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999654
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccccee
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~rei 283 (2304)
+++++.+|+.+++++.|+|+++|+..||||+|||+|++.++++++|+++.+|+ .++.+|||+|++.+||+
T Consensus 168 ------gPitt~~EA~eF~k~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHI 241 (1176)
T KOG0369|consen 168 ------GPITTVEEALEFVKEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHI 241 (1176)
T ss_pred ------CCcccHHHHHHHHHhcCCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCccee
Confidence 34899999999999999999999999999999999999999999999988775 35789999999999999
Q ss_pred eEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEE
Q 000086 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLE 363 (2304)
|||+++|.+||++++++||||+||||||++|.+|++.++++++++|...|+++++.+||..++|+||++| +.|++||||
T Consensus 242 EvQllgD~~GNvvHLyERDCSvQRRHQKVVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD-~~g~hYFIE 320 (1176)
T KOG0369|consen 242 EVQLLGDKHGNVVHLYERDCSVQRRHQKVVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVD-QKGRHYFIE 320 (1176)
T ss_pred EEEEecccCCCEEEEeecccchhhhhcceeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEc-cCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 589999999
Q ss_pred eccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEE
Q 000086 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVA 443 (2304)
Q Consensus 364 INpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~ 443 (2304)
+|||+|+||.+||.+|||||+.+|+++|.|..|+.+ |. .|+...++|.+|+
T Consensus 321 vN~RlQVEHTvTEEITgvDlV~aQi~vAeG~tLp~l-------gl----------------------~QdkI~trG~aIQ 371 (1176)
T KOG0369|consen 321 VNPRLQVEHTVTEEITGVDLVQAQIHVAEGASLPDL-------GL----------------------TQDKITTRGFAIQ 371 (1176)
T ss_pred ecCceeeeeeeeeeeccchhhhhhhhhhcCCCcccc-------cc----------------------cccceeecceEEE
Confidence 999999999999999999999999999999998753 11 5677888999999
Q ss_pred EEEccCCCCCCCCCCCCccccccccCCCcEEEEE-eeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 444 VRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYF-SVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 444 ~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~-~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
||+|.|||.++|.|.+|+|+-++-..+.|++.+. +--+|..|+++|||++-+|++.|.|.+-++++|.+||.+++|||
T Consensus 372 CRvTTEDPa~~FqPdtGriEVfRSgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~~~~~a~KMiRaL~eFRiRG- 450 (1176)
T KOG0369|consen 372 CRVTTEDPAKGFQPDTGRIEVFRSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRIRG- 450 (1176)
T ss_pred EEEeccCccccCCCCCceEEEEEeCCCceEeecCccccccccccccccceEEEEEecCCccHHHHHHHHHHHHHHhhcc-
Confidence 9999999999999999999865444456777763 56689999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2304)
++|||+||.++|.+|.|.+|+++|.|||+.
T Consensus 451 VKTNIpFllnvL~n~~Fl~g~~~T~FIDe~ 480 (1176)
T KOG0369|consen 451 VKTNIPFLLNVLTNPVFLEGTVDTTFIDET 480 (1176)
T ss_pred eecCcHHHHHHhcCcceeeeeeeeEEecCC
Confidence 999999999999999999999999999963
No 7
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=100.00 E-value=4.3e-88 Score=833.65 Aligned_cols=446 Identities=30% Similarity=0.449 Sum_probs=388.6
Q ss_pred ccccccccccCCCCCCcCCccccccCCCC---------CceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHH
Q 000086 1593 LLKVTELKFADDSGTWGTPLVLVERSPGL---------NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPRED 1663 (2304)
Q Consensus 1593 ~~~~~el~~~~~~~~~~~~l~e~~r~~g~---------n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~ 1663 (2304)
..++.+++||+ | .|.|+....+. ...|+|+|..++ +||+|++++||+|+++||+|+.+.
T Consensus 45 aReRv~~LlD~--G----sf~El~~~a~~~~~~~~~~~~~dGvVtG~G~i------~Gr~~~v~a~D~TV~gGt~~~~~~ 112 (526)
T COG4799 45 ARERVELLLDP--G----SFLELGALAGHRMGGDANELPGDGVVTGIGTI------NGRKVFVFANDFTVKGGTLGEMTA 112 (526)
T ss_pred HHHHHHHHcCC--C----chhhhhhhhhcccccccccCCCCeeEEeeeee------CCeEEEEEEecCceeccccccccc
Confidence 34677777877 6 46665544333 246999999886 999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCc
Q 000086 1664 AFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGE 1743 (2304)
Q Consensus 1664 ~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge 1743 (2304)
+|+.|++++|.++|+|+|||.+||||||| |++-
T Consensus 113 ~Ki~r~~~~A~~~g~P~i~l~dsgGari~--~~v~--------------------------------------------- 145 (526)
T COG4799 113 KKILRAQELAIENGLPVIGLNDSGGARIQ--EGVP--------------------------------------------- 145 (526)
T ss_pred chHHHHHHHHHHcCCCEEEEEcccccccc--cCcc---------------------------------------------
Confidence 99999999999999999999999999999 4433
Q ss_pred eeeEEEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHH
Q 000086 1744 TRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNK 1822 (2304)
Q Consensus 1744 ~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~ 1822 (2304)
|++|+|.|....++++..|||||+|+|+|+|||||+++|+|++||+++ ++||||||++||+
T Consensus 146 ------------------~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mfltGP~~ik~ 207 (526)
T COG4799 146 ------------------SLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFLTGPPVIKA 207 (526)
T ss_pred ------------------ccccchHHHHHHHHhccCCCEEEEEEecCcccccccccccceEEEEcCCccEEeeCHHHHHh
Confidence 333444444444555555899999999999999999999999999999 7999999999999
Q ss_pred hhcccccccccccCcceeecc-cCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCCC----ccccC---
Q 000086 1823 LLGREVYSSHMQLGGPKIMAT-NGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPV----EYLPE--- 1894 (2304)
Q Consensus 1823 ~lG~~vy~s~~~lGG~~i~~~-nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~~----~~~P~--- 1894 (2304)
++|++| +.++|||+++|++ +|++|++++||.++++.+|+||||||+++.+++|+.++.|+|+++. +++|.
T Consensus 208 vtGe~V--~~e~LGGa~vh~~~sGva~~~a~dd~~Ai~~vr~~lsylp~~~~~~~p~~~~~~~~~~~~~~l~~ivP~d~~ 285 (526)
T COG4799 208 VTGEEV--SAEELGGAQVHARKSGVADLLAEDDEDAIELVRRLLSYLPSNNREPPPVVPTPDEPDRDDEELDSIVPDDPR 285 (526)
T ss_pred hcCcEe--ehhhccchhhhcccccceeeeecCHHHHHHHHHHHHHhcCccCCCCCCcCCCCCCcccChhhhcccCCCCCC
Confidence 999999 7789999999996 5999999999999999999999999999999999877777777654 56887
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCcccccc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVV 1974 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~ 1974 (2304)
.+||+|++|.+ +||.+||+|++++||+++|||||||+|+|||||||+++
T Consensus 286 ~pYDvrevI~r-----------l~D~~~F~E~~~~~a~~iV~GfaRi~G~pVGiIANqp~-------------------- 334 (526)
T COG4799 286 KPYDVREVIAR-----------LVDDGEFLEFKAGYAKNIVTGFARIDGRPVGIIANQPR-------------------- 334 (526)
T ss_pred ccccHHHHHHH-----------hcCCccHHHHHhhhCcceEEEEEEECCEEEEEEecCcc--------------------
Confidence 99999999998 79999999999999999999999999999999999765
Q ss_pred ccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCch
Q 000086 1975 PQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG 2054 (2304)
Q Consensus 1975 ~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GG 2054 (2304)
+.||+|++++|.|+||||++|++|+||||+|+|||||++|+++|++||+|+||++++|+++++||+|++|+ +++|||
T Consensus 335 -~~~G~l~~~sa~KaArFI~~cd~~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~--rkayGg 411 (526)
T COG4799 335 -HLGGVLDIDSADKAARFIRLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVIT--RKAYGG 411 (526)
T ss_pred -ccccccchHHHHHHHHHHHhhhccCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEe--cccccc
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999 678999
Q ss_pred hhhhcccc-cCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 000086 2055 AWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQI 2133 (2304)
Q Consensus 2055 a~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 2133 (2304)
+|.+|+++ +++++ +||||+|+++||+|||||.|+||++ ++.|.+. .++++.+++
T Consensus 412 a~~~M~~~~~~~~~--~~AwP~a~iaVMG~egAv~i~~~k~--l~~~~~~-------------------~~~~~~~~~-- 466 (526)
T COG4799 412 AYYVMGGKALGPDF--NYAWPTAEIAVMGPEGAVSILYRKE--LAAAERP-------------------EEREALLRK-- 466 (526)
T ss_pred eeeeecCccCCCce--eEecCcceeeecCHHHHHHHHHHHH--hhcccCc-------------------hhHHHHHHH--
Confidence 99999988 88888 9999999999999999999999965 3333321 111222222
Q ss_pred HHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHHHH
Q 000086 2134 KAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRV 2188 (2304)
Q Consensus 2134 ~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r~l 2188 (2304)
+++.+|.+.+..|..+++.|+||+||+|++||..|..+|++-.
T Consensus 467 ------------~~~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR~~L~~~l~~~~ 509 (526)
T COG4799 467 ------------QLIAEYEEQFSNPYYAAERGYIDAVIDPADTRAVLGRALSALA 509 (526)
T ss_pred ------------HHHHHHHHhccchHHHHHhCCCCcccCHHHHHHHHHHHHHHHh
Confidence 3455666666678899999999999999999999998887754
No 8
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=1.4e-85 Score=840.61 Aligned_cols=483 Identities=34% Similarity=0.559 Sum_probs=452.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||+|+|++|+++|++||+||++++ +| +++.+.++.++++||+++.+|+..+.++|+|++.|+++
T Consensus 1 ~~~kvLIan~Geia~~iiraar~lGi~~V---------~v--~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~ 69 (499)
T PRK08654 1 MFKKILIANRGEIAIRVMRACRELGIKTV---------AV--YSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDV 69 (499)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEE---------EE--eccccccccchhhCCEEEEcCCCCcccCccCHHHHHHH
Confidence 68999999999999999999999999874 44 44667899999999999999988888999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|||||||++|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||+..
T Consensus 70 a~~~~~daI~pg~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~------------- 136 (499)
T PRK08654 70 AKKAGADAIHPGYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEE------------- 136 (499)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999998751
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~re 282 (2304)
.+.+.+++.++++++||||||||+.|+||+||++|++.+||.++++.+..+. ..+++|||+|+++++|
T Consensus 137 --------~v~~~~e~~~~a~~igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ 208 (499)
T PRK08654 137 --------GIEDIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRH 208 (499)
T ss_pred --------CCCCHHHHHHHHHHhCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcE
Confidence 1578999999999999999999999999999999999999999999876432 3467999999999999
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
++||+++|++|+++++++|+|++||+|||+++++|++.++++++++|.+.|.++++++||.|++||||+++ +++|||+
T Consensus 209 ieVqvl~d~~G~vv~l~~recsiqrr~qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~--~g~~yfl 286 (499)
T PRK08654 209 IEIQILADKHGNVIHLGDRECSIQRRHQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYS--NGNFYFL 286 (499)
T ss_pred EEEEEEEcCCCCEEEEeeeccccccCccceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEE--CCcEEEE
Confidence 99999999999999999999999999999999999988999999999999999999999999999999997 7899999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|||||+|++|++||++||+|++++|+++|+|.|++. .+..+.++||+|
T Consensus 287 EiNpRlqveh~vte~~tGvDlv~~~i~~A~G~~l~~--------------------------------~~~~~~~~g~ai 334 (499)
T PRK08654 287 EMNTRLQVEHPITEMVTGIDIVKEQIKIAAGEELSF--------------------------------KQEDITIRGHAI 334 (499)
T ss_pred EEECCCCCCCceeehhhCCCHHHHHHHHhcCCCCCC--------------------------------cccccccceEEE
Confidence 999999999999999999999999999999999863 234456789999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
+||||||||..+|.|++|+|+.+.+|++++|+++.++..|..++++|||++||||+||+||++|+++|.+||+++.|+|
T Consensus 335 ~~ri~ae~p~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~g~~v~~~~ds~~ak~i~~g~~r~~a~~~~~~al~~~~i~g- 413 (499)
T PRK08654 335 ECRINAEDPLNDFAPSPGKIKRYRSPGGPGVRVDSGVHMGYEIPPYYDSMISKLIVWGRTREEAIARMRRALYEYVIVG- 413 (499)
T ss_pred EEEEEeecCccCcCCCCCeEEEEEcCCCCCEEEECcccCCCCcCCccCchhheeeEeCCCHHHHHHHHHHHHhhcEEEC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhh--hhhhhc---c---CCCCchhHHHhhHHHHHHHhhhhhhcccccccccC
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSR--IAMRVR---A---ERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKG 594 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~--~~~~~~---~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~g 594 (2304)
++||++||++||++|+|++|+++|+|||++ |.++++ . ++|+ +++++|++..+++....+..+.|.+.+++|
T Consensus 414 ~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (499)
T PRK08654 414 VKTNIPFHKAVMENENFVRGNLHTHFIEEETTILEEMKRYALEEEEREK-TLSEKFFPGNKKVAAIAAAVNAYISSAKKD 492 (499)
T ss_pred ccCCHHHHHHHhCCHhhcCCCccchhhhcCHHHHHHHHHHhhhcccccc-hHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999 877765 3 4555 889999999999999999999999999999
Q ss_pred CCC
Q 000086 595 QIP 597 (2304)
Q Consensus 595 ~~~ 597 (2304)
|-.
T Consensus 493 ~~~ 495 (499)
T PRK08654 493 NEE 495 (499)
T ss_pred ccc
Confidence 854
No 9
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=9.9e-84 Score=798.25 Aligned_cols=442 Identities=38% Similarity=0.638 Sum_probs=419.4
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|++||||+|+|++|++++|+|++||++++ +++++.+.++.|.++||+++++++....++|+|++.|+.+
T Consensus 1 m~~kiLIanrGeia~ri~ra~~~lGi~tv-----------av~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~ 69 (449)
T COG0439 1 MFKKILIANRGEIAVRIIRACRELGIETV-----------AVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAA 69 (449)
T ss_pred CCceEEEecCchhHHHHHHHHHHhCCeEE-----------EEeccccccchhhhhCceEEEcCCccchhhhhhHHHHHHH
Confidence 68999999999999999999999998884 5555777888999999999999987888999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|++.++|+|||||||+|||+.|++.|++.|+.|+||++++++.++||+.+|++++++|||++||+. +
T Consensus 70 a~~~gadai~pGygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~-~------------ 136 (449)
T COG0439 70 AEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSD-G------------ 136 (449)
T ss_pred HHhcCCceEcccchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCC-C------------
Confidence 999999999999999999999999999999999999999999999999999999999999999884 1
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC---CC-cEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GS-PIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~---~~-~i~VEeyI~g~re 282 (2304)
.+.+.+|+.+.+++|||||||||+.|+||+|||+|++.+||.++|.+++++.. ++ .+++|||+++++|
T Consensus 137 --------~~~~~ee~~~~a~~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rh 208 (449)
T COG0439 137 --------AVADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRH 208 (449)
T ss_pred --------CcCCHHHHHHHHHHcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCce
Confidence 15678999999999999999999999999999999999999999999998875 44 4999999999999
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
+++|+++|++|+++++++|||++||||||+++++|++.++++.+.+|.+.++++++++||.|++|+||+++. +++|||+
T Consensus 209 ievqv~gD~~g~~i~l~eRdcsiqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~~~yfi 287 (449)
T COG0439 209 IEVQVLGDGHGNVIHLGERDCSIQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDS-NGEFYFI 287 (449)
T ss_pred EEEEEEEcCcccEEEEEeccCCCcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 6899999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|+|||+||+||+||++||+||+.+||++|+|.+++. .+.+...+||++
T Consensus 288 EmN~Rlqveh~vte~vtGiDlv~~qi~ia~ge~l~~--------------------------------~q~~~~~~g~ai 335 (449)
T COG0439 288 EMNTRLQVEHPVTEMVTGIDLVKEQIRIAAGEPLSL--------------------------------KQEDIKFRGHAI 335 (449)
T ss_pred EEecccccCccceehhhhhhHHHHHHHHHcCCCCCC--------------------------------CCCcccccceee
Confidence 999999999999999999999999999999988753 233445569999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
+|||++|||..+|.|++|.++...+|++++||++.++..|..++++|||++||++++|.+|++|+.+|.+||++++|+|
T Consensus 336 e~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d~~~~~~~~i~~~yds~i~k~i~~~~~r~~ai~~~~~aL~e~~i~G- 414 (449)
T COG0439 336 ECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRDEAIARMRRALDELVIDG- 414 (449)
T ss_pred eceeeccCCCCCcCCCCCeeeeecCCCCCceEEEeecccCcccCcchhhheeEEEEecCChHHHHHHHHHHHHheEecC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIA 554 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~ 554 (2304)
++||++|++.++++++|.+|+++|+||++.+.
T Consensus 415 ~~t~~~~~~~~~~~~~~~~g~~~t~~l~~~~~ 446 (449)
T COG0439 415 IKTNIPLLQEILRDPDFLAGDLDTHFLETHLE 446 (449)
T ss_pred ccCChHHHHHHhcChHhhcCCcchhhhhhccc
Confidence 99999999999999999999999999998754
No 10
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=5.2e-82 Score=856.44 Aligned_cols=443 Identities=35% Similarity=0.583 Sum_probs=410.8
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC---CCCCCccCHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG---TNNNNYANVQLIVEM 126 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~---~~~~sY~dvd~Ii~i 126 (2304)
||||||||++|++++|+|+++||+++ +++++.+..+.|..+||+++.+|.+ ....+|+|++.|+++
T Consensus 1 ~~lianrgeia~ri~ra~~elGi~tV-----------av~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~i 69 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANELGIRTV-----------AIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRV 69 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEE-----------EEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHH
Confidence 69999999999999999999998885 4455666889999999999999876 335799999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|||||||++|++.+++.|++.|+.|+||++++++.++||..++.+++++|||+|||+.
T Consensus 70 ak~~~iDaI~PGyGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~-------------- 135 (1143)
T TIGR01235 70 AKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTD-------------- 135 (1143)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~re 282 (2304)
..+.+.+++.++++++||||||||+.|+||+|+++|++.+||.++++.+..++ .++.+|||+|+++++|
T Consensus 136 -------~~v~~~eea~~~ae~iGyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~re 208 (1143)
T TIGR01235 136 -------GPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRH 208 (1143)
T ss_pred -------cCcCCHHHHHHHHHHcCCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeE
Confidence 12678999999999999999999999999999999999999999999886553 2468999999999999
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
++||+++|++|+++++++|||++||+|||+++.+|++.++++++++|.+.|.++++++||.|+++|||++++ +|++|||
T Consensus 209 IeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~-dg~~yfI 287 (1143)
T TIGR01235 209 IEVQLLGDKHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDN-DGKFYFI 287 (1143)
T ss_pred EEEEEEEeCCCCEEEEEeccccccccCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeC-CCcEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999984 5789999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|||||+|++|++||+++|+|++++|+++|+|.+++.+ ++ | + ..|..+.++||+|
T Consensus 288 EVNPRiqveh~vTe~vtGiDlv~~qi~iA~G~~L~~~-~~----~-------------------~--~~q~~~~~~g~ai 341 (1143)
T TIGR01235 288 EVNPRIQVEHTVTEEITGIDIVQAQIHIADGASLPTP-QL----G-------------------V--PNQEDIRTNGYAI 341 (1143)
T ss_pred EeecCCCcchhHHHHHhCcHHHHHHHHHHcCCCCCcc-cc----C-------------------C--CcccccCCCcEEE
Confidence 9999999999999999999999999999999998731 00 1 1 1456677889999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEe-eeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFS-VKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~-v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
+||||+|||.++|.|++|+|..+.+|+++|||++.+ ..+|..|+++|||+++|+|+||.||++|+++|.+||+++.|+|
T Consensus 342 ~~ri~~edp~~~f~p~~g~i~~~~~~~g~gvr~d~~~~~~g~~v~~~yds~~~k~~~~~~~~~~a~~~~~~al~e~~i~g 421 (1143)
T TIGR01235 342 QCRVTTEDPANNFQPDTGRIEAYRSAGGFGIRLDGGNSYAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRALREFRIRG 421 (1143)
T ss_pred EEEEeeecCCCCcccCCcEeeEEecCCCCCeEecccccCCCCCcCCcccchhhhheeeCCCHHHHHHHHHHHHhhcEEEC
Confidence 999999999999999999999999999999999987 5589999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHhcCccccccccccchhhhhh
Q 000086 522 EIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2304)
Q Consensus 522 ~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2304)
++||++||+++|.||+|++|+++|+|||++
T Consensus 422 -v~tn~~~l~~~l~~~~f~~~~~~t~~~~~~ 451 (1143)
T TIGR01235 422 -VKTNIPFLENVLGHPKFLDGSYDTRFIDTT 451 (1143)
T ss_pred -ccCCHHHHHHHhcCHhhcCCCccchhhhcC
Confidence 999999999999999999999999999985
No 11
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=9.3e-80 Score=839.28 Aligned_cols=448 Identities=34% Similarity=0.567 Sum_probs=414.1
Q ss_pred CCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHH
Q 000086 45 KKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLI 123 (2304)
Q Consensus 45 ~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~-~~~~sY~dvd~I 123 (2304)
++||+||||||||++|++++|+|+++|++++ ++++|.+.++++..+||+++.+|++ .+..+|+|++.|
T Consensus 2 ~~~~kkvLianrGeiavri~raa~elGi~~V-----------av~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~I 70 (1146)
T PRK12999 2 MKKIKKVLVANRGEIAIRIFRAATELGIRTV-----------AIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEI 70 (1146)
T ss_pred CCcccEEEEECCcHHHHHHHHHHHHcCCEEE-----------EEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHH
Confidence 4679999999999999999999999998874 4455777889999999999999875 335799999999
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcc
Q 000086 124 VEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2304)
Q Consensus 124 i~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~ 203 (2304)
+++|+++++|+|||||||++|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||+..
T Consensus 71 i~iAk~~~iDaI~PgyGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~---------- 140 (1146)
T PRK12999 71 IRVAKQAGVDAIHPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEG---------- 140 (1146)
T ss_pred HHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999997641
Q ss_pred cccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccc
Q 000086 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQ 279 (2304)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g 279 (2304)
.+.+.+++.++++++||||||||+.|+||+|+++|++.+||.++++.+..++. .+++++|+|+++
T Consensus 141 -----------~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g 209 (1146)
T PRK12999 141 -----------PIDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVEN 209 (1146)
T ss_pred -----------CCCCHHHHHHHHHHhCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 16789999999999999999999999999999999999999999998776532 468999999999
Q ss_pred cceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcE
Q 000086 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359 (2304)
Q Consensus 280 ~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~ 359 (2304)
++|++||+++|++|+++++++|+|++||+|||+++.+|+..++++++++|.+.|.++++++||.|++|+||++++ +|+|
T Consensus 210 ~~~ieVqvl~D~~G~vv~l~erdcsvqrr~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~-dg~~ 288 (1146)
T PRK12999 210 PRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDA-DGNF 288 (1146)
T ss_pred CeEEEEEEEEECCCCEEEEEccccceeecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-CCCE
Confidence 999999999999999999999999999999999999999889999999999999999999999999999999994 5689
Q ss_pred EEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCce
Q 000086 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKG 439 (2304)
Q Consensus 360 yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~g 439 (2304)
||+|||||+|++|+++|+++|+|++++|+++|+|.|++.++. |+ +.|..+.++|
T Consensus 289 yfIEINpRlqveh~vte~~tGvDlv~~~iriA~G~~l~~~~~-----~~---------------------~~q~~~~~~g 342 (1146)
T PRK12999 289 YFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAEGATLHDLEI-----GI---------------------PSQEDIRLRG 342 (1146)
T ss_pred EEEEEECCCCCcchHHHHHhCcCHHHHHHHHHCCCCCCcccc-----cc---------------------ccccccccce
Confidence 999999999999999999999999999999999999864210 10 1244566789
Q ss_pred EEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeee-eCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000086 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVK-SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2304)
Q Consensus 440 hai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~-~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2304)
|+|+||||+|||.++|.|.+|+|+.+..+++++|+++.++. +|..++++|||+++|||++|+||++|+++|.+||++++
T Consensus 343 ~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~~g~~v~~~~Ds~l~kvi~~g~~~~~A~~~~~~aL~~~~ 422 (1146)
T PRK12999 343 YAIQCRITTEDPANNFMPDTGRITAYRSPGGFGVRLDGGNAFAGAEITPYYDSLLVKLTAWGRTFEQAVARMRRALREFR 422 (1146)
T ss_pred eEEEEEEEeecCccCccCCCcEEEEEEcCCCCcEEeeccccCCCCeeCCCccCCceEEEEEcCCHHHHHHHHHHHHhhcE
Confidence 99999999999999999999999999999999999998876 89999999999999999999999999999999999999
Q ss_pred EecccccCHHHHHHhcCccccccccccchhhhhh
Q 000086 519 IRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2304)
Q Consensus 519 I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2304)
|+| ++||++||+++|+||+|++|+++|+|||++
T Consensus 423 i~g-v~tn~~~l~~~~~~~~f~~~~~~t~~~~~~ 455 (1146)
T PRK12999 423 IRG-VKTNIPFLENVLKHPDFRAGDYTTSFIDET 455 (1146)
T ss_pred Eec-ccCcHHHHHHHhCCHhhcCCCccchhhhcC
Confidence 999 999999999999999999999999999983
No 12
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=8e-76 Score=750.35 Aligned_cols=462 Identities=32% Similarity=0.523 Sum_probs=421.3
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||+|+|++|++++++|+++|++++ ++++|.+.++.++++||+++.+|+.+. .+|.|.+.|+++
T Consensus 1 ~~~kvLi~~~geia~~ii~a~~~~Gi~~v-----------~v~~~~d~~a~~~~~aD~~~~i~~~~~-~~y~d~~~i~~~ 68 (472)
T PRK07178 1 MIKKILIANRGEIAVRIVRACAEMGIRSV-----------AIYSEADRHALHVKRADEAYSIGADPL-AGYLNPRRLVNL 68 (472)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHcCCeEE-----------EEeCCCccCCccHhhCCEEEEcCCCch-hhhcCHHHHHHH
Confidence 68999999999999999999999998874 444477788999999999999987654 899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|+|||||.+|++.+++.|++.|++|+||++++++.++||..++++++++|||+|||+.
T Consensus 69 a~~~~~D~I~pg~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~-------------- 134 (472)
T PRK07178 69 AVETGCDALHPGYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSE-------------- 134 (472)
T ss_pred HHHHCCCEEEeCCCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~re 282 (2304)
..+.+.+++.++++++||||||||+.|+||+|+++|++++||.++++.+..+. ...++|+|+|+++++|
T Consensus 135 -------~~~~~~~e~~~~~~~igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~e 207 (472)
T PRK07178 135 -------GNLADLDEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKH 207 (472)
T ss_pred -------cCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeE
Confidence 12678999999999999999999999999999999999999999998775542 2457999999999999
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
++|++++|++|+++++++|+|++|++|||+++.+|++.++++++++|.+.|.++++++||.|+++|||++++ +|++||+
T Consensus 208 iev~v~~d~~G~~v~~~er~~s~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~-~g~~y~i 286 (472)
T PRK07178 208 IEVQILADSHGNVVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDA-DGEVYFM 286 (472)
T ss_pred EEEEEEEECCCCEEEEEccccceEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999984 6789999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|||||+|++|+++|+++|+|++++++++++|.|++. .+....++||+|
T Consensus 287 EiNpRl~~~~~~te~~tGvdl~~~~ir~a~G~~l~~--------------------------------~~~~~~~~g~ai 334 (472)
T PRK07178 287 EMNTRVQVEHTITEEITGIDIVREQIRIASGLPLSY--------------------------------KQEDIQHRGFAL 334 (472)
T ss_pred EEeCCcCCCccceeeeeCcCHHHHHHHHHCCCCCCC--------------------------------ccccCCcceEEE
Confidence 999999999999999999999999999999999863 223456679999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
++||++|||..+|.|++|+|..+.+|++++||+++.+.+|..|+++|||++||||++|+||++|+++|.+||+++.|+|
T Consensus 335 ~~ri~ae~~~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~g~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~i~g- 413 (472)
T PRK07178 335 QFRINAEDPKNDFLPSFGKITRYYAPGGPGVRTDTAIYTGYTIPPYYDSMCAKLIVWALTWEEALDRGRRALDDMRVQG- 413 (472)
T ss_pred EEEEeeecCCcCEecCceEEEEEEcCCCCCeEEEecccCCCEeCcccCCccceEEEEcCCHHHHHHHHHHHHhhcEEeC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhhhhhhhc--cCCCCchhHHHhhHHHHH
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVR--AERPPWYLSVVGGALYKA 576 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~--~~~~~~~~~~~~~a~~~~ 576 (2304)
++||++||++||.+|+|++|+++|+|||++ .+.+. ...+...++++++|+..+
T Consensus 414 ~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (472)
T PRK07178 414 VKTTIPYYQEILRNPEFRSGQFNTSFVESH-PELTNYSIKRKPEELAAAIAAAIAA 468 (472)
T ss_pred ccCCHHHHHHHhcCHhhcCCCccchhHhcC-hhhhcCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 44432 223333444555555444
No 13
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=6e-75 Score=741.41 Aligned_cols=446 Identities=34% Similarity=0.557 Sum_probs=413.7
Q ss_pred CCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHH
Q 000086 45 KKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIV 124 (2304)
Q Consensus 45 ~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii 124 (2304)
.++|+||||+|+|++|++++++||++||+++ +++++.+.++++.++||+++.+++.....+|.|.+.|+
T Consensus 2 ~~~~~~vLi~~~geia~~ii~aa~~lG~~~v-----------~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~ 70 (467)
T PRK12833 2 PSRIRKVLVANRGEIAVRIIRAARELGMRTV-----------AACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAIL 70 (467)
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHHcCCeEE-----------EEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHH
Confidence 3689999999999999999999999999874 44446678889999999999887667778999999999
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccc
Q 000086 125 EMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2304)
Q Consensus 125 ~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~ 204 (2304)
++|+++++|+|||||||++|++.+++.|++.|+.|+||++++++.++||..+|++++++|||+|||+.
T Consensus 71 ~~a~~~~~daI~pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~------------ 138 (467)
T PRK12833 71 AAARQCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSD------------ 138 (467)
T ss_pred HHHHHhCCCEEEECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred ccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccc
Q 000086 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQS 280 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~ 280 (2304)
..+.+.+++.++++++||||||||..|+||+|+++|++.+||.++++.+..+. ....+|||+|++++
T Consensus 139 ---------~~v~~~~e~~~~~~~igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~ 209 (467)
T PRK12833 139 ---------GVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARA 209 (467)
T ss_pred ---------cCcCCHHHHHHHHHHhCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 01678999999999999999999999999999999999999999998876543 24579999999988
Q ss_pred ceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 281 reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
+|++|++++|++ ++++++.|+|++||+|||+++++|++.++++..++|.+.|.++++++||+|++||||++++++|++|
T Consensus 210 ~ei~v~v~~dg~-~~~~~~~~~~~~~r~~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~ 288 (467)
T PRK12833 210 RHIEVQILGDGE-RVVHLFERECSLQRRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFY 288 (467)
T ss_pred EEEEEEEEeCCC-cEEEEEEeecccccCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEE
Confidence 999999999986 6889999999999999999999999889999999999999999999999999999999986568899
Q ss_pred EEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceE
Q 000086 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGH 440 (2304)
Q Consensus 361 fLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~gh 440 (2304)
|||+|||+|++|+++++++|+|++++++++++|.|++. .+..+.++||
T Consensus 289 ~iEvNpR~~~~~~~te~~tGvdl~~~~i~~a~G~~l~~--------------------------------~~~~~~~~g~ 336 (467)
T PRK12833 289 FIEMNTRIQVEHPVTEAITGIDLVQEMLRIADGEPLRF--------------------------------AQGDIALRGA 336 (467)
T ss_pred EEEEECCCCcchhhhHHHhCCCHHHHHHHHHCCCCCCC--------------------------------CccccCcceE
Confidence 99999999999999999999999999999999999862 2234556799
Q ss_pred EEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000086 441 CVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2304)
Q Consensus 441 ai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2304)
++++||++|||..+|.|++|+|+.+.++.+|||++++.+..|..|+++|||++||||++|+||++|+++|.+||+++.|+
T Consensus 337 ai~~ri~ae~~~~~~~p~~g~i~~~~~~~~~gvr~d~~~~~G~~v~~~~ds~l~~vi~~g~~~~~a~~~~~~al~~~~i~ 416 (467)
T PRK12833 337 ALECRINAEDPLRDFFPNPGRIDALVWPQGPGVRVDSLLYPGYRVPPFYDSLLAKLIVHGEDRAAALARAARALRELRID 416 (467)
T ss_pred EEEEEEecccCCCCcccCCCEEEEEEcCCCCCeEEecceeCcCEeCCCcCcchheEEEEcCCHHHHHHHHHHHHHhcEeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHhcCccccccccccchhhhhhhhhh
Q 000086 521 GEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMR 556 (2304)
Q Consensus 521 G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~ 556 (2304)
| ++||++||++||.+|+|++|+++|+|||+++++.
T Consensus 417 g-~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 451 (467)
T PRK12833 417 G-MKTTAPLHRALLADADVRAGRFHTNFLEAWLAEW 451 (467)
T ss_pred C-ccCCHHHHHHHhcChhhcCCCcccHHHHhhhhhh
Confidence 9 8999999999999999999999999999976554
No 14
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=1.7e-74 Score=738.62 Aligned_cols=446 Identities=32% Similarity=0.524 Sum_probs=413.3
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||+|+|++|++++++||++|++++ +++++.+.++.++++||+++.+|+.+ ..+|.|.+.|+++
T Consensus 1 ~~kkiLi~~~ge~a~~~i~aa~~lG~~~v-----------~v~~~~d~~~~~~~~AD~~~~i~~~~-~~~y~d~~~i~~~ 68 (478)
T PRK08463 1 MIHKILIANRGEIAVRVIRACRDLHIKSV-----------AIYTEPDRECLHVKIADEAYRIGTDP-IKGYLDVKRIVEI 68 (478)
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCeEE-----------EEECCCccCCcchhhcCEEEEcCCCc-hhcccCHHHHHHH
Confidence 68999999999999999999999999884 44446667899999999999998755 4889999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+||||||+.+|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||+..
T Consensus 69 a~~~~iDaI~pg~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~------------- 135 (478)
T PRK08463 69 AKACGADAIHPGYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEK------------- 135 (478)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999997650
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~re 282 (2304)
....+.+++.++++++||||||||+.|+||+||++|++.+||..+++.+..+ .....++||+|+++++|
T Consensus 136 -------~~~~~~~~~~~~~~~igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~ 208 (478)
T PRK08463 136 -------LNSESMEEIKIFARKIGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRH 208 (478)
T ss_pred -------cCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeE
Confidence 0035788999999999999999999999999999999999999999876432 34568999999999999
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
+++++++|++|++++++.|+|++|++|||+++.+|++.+++++.++|.+.|.++++++||.|++|+||++++ +|++||+
T Consensus 209 iev~v~~d~~g~v~~~~er~~s~~~~~~~~ie~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~~~y~i 287 (478)
T PRK08463 209 IEFQILGDNYGNIIHLCERDCSIQRRHQKVIEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YNRFYFM 287 (478)
T ss_pred EEEEEEEcCCCCEEEEeccCCccccccCceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999984 6889999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|||||+|++|+++|++||+|++++++++++|.+++. .+..+.++||+|
T Consensus 288 EiN~R~~~~~~~te~~tGidlv~~~ir~a~G~~l~~--------------------------------~~~~~~~~g~ai 335 (478)
T PRK08463 288 EMNTRIQVEHGVTEEITGIDLIVRQIRIAAGEILDL--------------------------------EQSDIKPRGFAI 335 (478)
T ss_pred EEECCcCCCcceeeHhhCCCHHHHHHHHHcCCCCCC--------------------------------ccccCCCceEEE
Confidence 999999999999999999999999999999998752 123345679999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
++||+||||...|.|++|+|..+..+..+++|+++.+..|..++++|||++|++|++|+||++|+++|.++|+++.|+|
T Consensus 336 ~~ri~ae~~~~~f~p~~G~~~~~~~~~~~~vr~d~~~~~g~~v~~~~d~~la~~i~~g~~r~~a~~~~~~al~~~~i~g- 414 (478)
T PRK08463 336 EARITAENVWKNFIPSPGKITEYYPALGPSVRVDSHIYKDYTIPPYYDSMLAKLIVKATSYDLAVNKLERALKEFVIDG- 414 (478)
T ss_pred EEEEeccCcccCeecCCcEEEEEEcCCCCCeeEeccccCCCEeCcccccceeEEEEECCCHHHHHHHHHHHHhhcEEeC-
Confidence 9999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhhhhhhhc
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVR 558 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~ 558 (2304)
++||++||+.+|.+|+|++|+++|+|||+++++.+.
T Consensus 415 ~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~ 450 (478)
T PRK08463 415 IRTTIPFLIAITKTREFRRGYFDTSYIETHMQELLE 450 (478)
T ss_pred ccCCHHHHHHHhCCHHHhCCCccchhhhhCchhhcc
Confidence 999999999999999999999999999998887764
No 15
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=100.00 E-value=3.6e-73 Score=723.41 Aligned_cols=447 Identities=22% Similarity=0.270 Sum_probs=367.7
Q ss_pred cccccccccCCCCCCcCCccccccCCCCC-------ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHH
Q 000086 1594 LKVTELKFADDSGTWGTPLVLVERSPGLN-------NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFF 1666 (2304)
Q Consensus 1594 ~~~~el~~~~~~~~~~~~l~e~~r~~g~n-------~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~ 1666 (2304)
.++.+++||+ |+ +|.|+....|.+ .+|||++..++ +||+|+|++||+||++||+|+..++|+
T Consensus 85 ReRI~~LlD~--gS---~F~El~~lag~~~y~~~~~~dgVVtG~G~V------~Gr~V~v~a~D~tv~GGs~g~~~~~Ki 153 (569)
T PLN02820 85 RERIDRLLDP--GS---PFLELSQLAGHELYGEDLPSGGIVTGIGPV------HGRLCMFVANDPTVKGGTYYPITVKKH 153 (569)
T ss_pred HHHHHHHcCC--CC---CeEEchhhccCCcccccCCCCeEEEEEEEE------CCEEEEEEEECCCccCCCCCHHHHHHH
Confidence 3666778887 51 266665444432 37899999876 999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceee
Q 000086 1667 LAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRW 1746 (2304)
Q Consensus 1667 ~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~ 1746 (2304)
.|++++|.+.++|+|+|.+||||||+.+++.+++. .+++.+|...
T Consensus 154 ~r~~elA~~~~lPlV~l~DSgGarl~~q~e~~~~~-----------~~~g~if~~~------------------------ 198 (569)
T PLN02820 154 LRAQEIAAQCRLPCIYLVDSGGANLPRQAEVFPDR-----------DHFGRIFYNQ------------------------ 198 (569)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCcCCcccccccchH-----------hHHHHHHHHH------------------------
Confidence 99999999999999999999999997656665541 1222232211
Q ss_pred EEEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhc
Q 000086 1747 VVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLG 1825 (2304)
Q Consensus 1747 ~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG 1825 (2304)
.+.|+ ..||+||+|+|+|+|||||.+.++|++||+++ +.|+|+||++|+.++|
T Consensus 199 ----------------~~ls~----------~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~aGP~vV~~~~G 252 (569)
T PLN02820 199 ----------------ARMSS----------AGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLAGPPLVKAATG 252 (569)
T ss_pred ----------------HHHhC----------CCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEecCHHHHHhhcC
Confidence 11111 12799999999999999999999999999976 7899999999999999
Q ss_pred ccccccccccCcceeec-ccCceEEEecCcHHHHHHHHHHHhcCCCCCC---------CCCCcCCCCCCCCCCCccccC-
Q 000086 1826 REVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAILKWLSYVPPHIG---------GALPIISPLDPPDRPVEYLPE- 1894 (2304)
Q Consensus 1826 ~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~---------~~~p~~~~~d~~~r~~~~~P~- 1894 (2304)
+++ ++++|||+++|. .||++|++++||.+++..+|+||||||.++. ..+|..+|.++.++...++|.
T Consensus 253 e~v--~~eeLGGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ivP~~ 330 (569)
T PLN02820 253 EEV--SAEDLGGADVHCKVSGVSDHFAQDELHALAIGRNIVKNLHLAAKQGMENTLGSKNPEYKEPLYDVKELRGIVPAD 330 (569)
T ss_pred ccc--CHHHhCCHHHhcccccccccccCchHHHHHHHHHHHHhcCcCCcccccccccCCCCCCcCcccChhhHhhccCCC
Confidence 998 999999999999 6999999999999999999999999998763 111222233334456778998
Q ss_pred --CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCcccc
Q 000086 1895 --NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHER 1972 (2304)
Q Consensus 1895 --~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~ 1972 (2304)
++||+|++|++ ++|++||+|+++.||+++|||+|||+|+|||||||
T Consensus 331 ~~~~yD~r~vi~~-----------ivD~~sf~E~~~~~g~~iVtG~aRi~G~~VgvvAn--------------------- 378 (569)
T PLN02820 331 HKQSFDVRSVIAR-----------IVDGSEFDEFKKNYGTTLVTGFARIYGQPVGIIGN--------------------- 378 (569)
T ss_pred CCCCCCHHHHHHH-----------hcCCceeEEecccCCCcEEEEEEEECCEEEEEEEE---------------------
Confidence 89999999998 79999999999999999999999999999999999
Q ss_pred ccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCC
Q 000086 1973 VVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELR 2052 (2304)
Q Consensus 1973 ~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~ 2052 (2304)
+|+|++++++|++|||++|++++||||+|+||+||++|.++|..|++++|+++++|+++++||+|++|+ |+++
T Consensus 379 -----~g~l~~~~a~Kaarfi~lc~~~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~--g~a~ 451 (569)
T PLN02820 379 -----NGILFTESALKGAHFIELCAQRGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIV--GGSF 451 (569)
T ss_pred -----CCccCHHHHHHHHHHHHHHHhcCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEE--CCcc
Confidence 489999999999999999999999999999999999999999999999999999999999999999999 4556
Q ss_pred chhhhhc-ccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHH
Q 000086 2053 GGAWVVV-DSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQ 2131 (2304)
Q Consensus 2053 GGa~vv~-~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~ 2131 (2304)
||+|.+| ++.+++|+ +||||+|++|||+||++++|.|+++.. +..+.+++..+++.+++++
T Consensus 452 G~g~~aM~g~~~~~d~--~~awp~A~i~vmg~e~aa~il~~~e~~----------------~~~~~~~~~~~~~~~~~~~ 513 (569)
T PLN02820 452 GAGNYGMCGRAYSPNF--LFMWPNARIGVMGGAQAAGVLAQIERE----------------NKKRQGIQWSKEEEEAFKA 513 (569)
T ss_pred hHHHHHhcCcCCCCCE--EEECCCCeEEecCHHHHHHHHHHHHhh----------------hhhhccccCCccHHHHHHH
Confidence 6555555 56699999 999999999999999999999987611 0111111222233334444
Q ss_pred HHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHH
Q 000086 2132 QIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRR 2186 (2304)
Q Consensus 2132 ~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r 2186 (2304)
+++++ .+.+.+|+..++.|.||+||+|++||+.|++.|+.
T Consensus 514 ~~~~~---------------~~~~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~ 553 (569)
T PLN02820 514 KTVEA---------------YEREANPYYSTARLWDDGVIDPADTRRVLGLCLSA 553 (569)
T ss_pred HHHHH---------------HHHhCCHHHHHHcCCcCcccCHHHHHHHHHHHHHH
Confidence 44332 22244567789999999999999999999999975
No 16
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=100.00 E-value=4e-74 Score=734.27 Aligned_cols=423 Identities=30% Similarity=0.434 Sum_probs=352.9
Q ss_pred CceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCC--CCCchhhhhh
Q 000086 1622 NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGA--RIGVAEEVKA 1699 (2304)
Q Consensus 1622 n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GA--Ri~~~e~v~~ 1699 (2304)
..+|+|++..++ +||+|+|+++|+||++||+|+.+++|+.++.++|.++|+|+|+|.+|||+ ||+ |++.+
T Consensus 43 p~~gvvtG~G~I------~G~~v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~~P~v~l~dsgGa~~r~~--eg~~~ 114 (493)
T PF01039_consen 43 PGDGVVTGIGKI------NGRPVVVIAQDFTVLGGSVGEVHGEKIARAIELALENGLPLVYLVDSGGAFLRMQ--EGVES 114 (493)
T ss_dssp TTTTEEEEEEEE------TTEEEEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHTEEEEEEEEESSBCGGGG--GHHHH
T ss_pred CCCcEEEEEEee------CCeeEEEEEeccceecCCCCcccceeeehHHHHHHHcCCCcEEeccccccccccc--hhhhh
Confidence 357899999876 99999999999999999999999999999999999999999999999999 887 88888
Q ss_pred hhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccccccccccccccccccccc
Q 000086 1700 CFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKE 1779 (2304)
Q Consensus 1700 l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ 1779 (2304)
+++++ . |..++++++..
T Consensus 115 l~~~g------------~---------------------------------------------------i~~~~~~~~~~ 131 (493)
T PF01039_consen 115 LMGMG------------R---------------------------------------------------IFRAIARLSGG 131 (493)
T ss_dssp HHHHH------------H---------------------------------------------------HHHHHHHHHTT
T ss_pred hhhhH------------H---------------------------------------------------HHHHHHHHhcC
Confidence 76554 1 12223333445
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHH
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEG 1857 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~ 1857 (2304)
||+|++++|+|+|||||+++++|++||+++ +.|+|+||++|+.++|+++ +++++||+++|. +||++|++++||+++
T Consensus 132 iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP~vv~~~~Ge~~--~~~~lgG~~~h~~~sG~~d~v~~de~~a 209 (493)
T PF01039_consen 132 IPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGPRVVESATGEEV--DSEELGGADVHAAKSGVVDYVVDDEEDA 209 (493)
T ss_dssp S-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTHHHHHHHHSSCT--SHHHHHBHHHHHHTSSSSSEEESSHHHH
T ss_pred CCeEEEEccccccchhhcccccCccccCccceEEEeccccccccccCccc--cchhhhhhhhhcccCCCceEEEechHHH
Confidence 899999999999999999999999999999 9999999999999999888 889999999986 899999999999999
Q ss_pred HHHHHHHHhcCC---CCCCCCCCcCCCCCCCCCC---CccccC---CCCChHHHhhcccCCCCCcccccccCCCceeccc
Q 000086 1858 ISAILKWLSYVP---PHIGGALPIISPLDPPDRP---VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE 1928 (2304)
Q Consensus 1858 ~~~i~~~LsylP---~~~~~~~p~~~~~d~~~r~---~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~ 1928 (2304)
++.+++||+|+| .++..++|..++.|++++. ..++|. ++||+|++|++ ++|.++|+|+++
T Consensus 210 ~~~ir~~ls~lp~~~~~~~~~~p~~~~~d~~~~~~~l~~~~P~~~~~~yD~r~ii~~-----------i~D~~~f~E~~~ 278 (493)
T PF01039_consen 210 LAQIRRLLSYLPSPASNNFEDPPRVPTSDPPDRDEELDSIIPDDRRRPYDMRDIIAR-----------IVDDGSFFELKP 278 (493)
T ss_dssp HHHHHHHHHTS-SSTSSTTSS--BSSSSSGSSSCGGGHGCS-SSTTS---HHHHHHH-----------HSGGGBEEEEST
T ss_pred HHHHHHhhcccccccccccCCCcccccCCCcccccccccccccccCCCCCcceeeEe-----------cccCCCceeccc
Confidence 999999999999 4444578888888888874 467887 99999999998 799999999999
Q ss_pred CCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEec
Q 000086 1929 GWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILAN 2008 (2304)
Q Consensus 1929 ~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d 2008 (2304)
+||+++|||+|||+|+|||||||+++ +.+|+|++++++|++|||++|++|+||||+|+|
T Consensus 279 ~~g~~~vtg~arl~G~pVGiian~~~---------------------~~~G~~~~~~a~K~arfi~lcd~~~iPlv~l~d 337 (493)
T PF01039_consen 279 GYGKNIVTGFARLGGRPVGIIANNPR---------------------QRAGALDPDGARKAARFIRLCDAFNIPLVTLVD 337 (493)
T ss_dssp TSSTTEEEEEEEETTEEEEEEEE-TT---------------------CGGGEB-HHHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred cccCCeEEeeeeeCCcceEEEEeccc---------------------cccccCChHHHHHHHHHHHHHHhhCCceEEEee
Confidence 99999999999999999999999654 237899999999999999999999999999999
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccchh
Q 000086 2009 WRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMI 2087 (2304)
Q Consensus 2009 ~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v 2087 (2304)
||||++|.++|+.|++++||++++|+++++||+|++|+ ++++||+|++|+++ +++|+ +||||+|++|||+||++|
T Consensus 338 tpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~--~~~~Gga~~am~~~~~~~~~--~~Awp~a~~~vm~~e~a~ 413 (493)
T PF01039_consen 338 TPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIV--RKAYGGAYYAMCGRGYGPDF--VFAWPTAEIGVMGPEGAA 413 (493)
T ss_dssp ECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEE--EEEEHHHHHHTTGGGGTTSE--EEEETT-EEESS-HHHHH
T ss_pred cccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEe--CCccCcchhhhcccccchhh--hhhhhcceeeecChhhhh
Confidence 99999999999999999999999999999999999999 68899999999887 88889 899999999999999999
Q ss_pred hhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCc
Q 000086 2088 EIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVI 2167 (2304)
Q Consensus 2088 ~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~I 2167 (2304)
+|+|+++.....+++ .+..+..+++++++++ ...++.++++.|.|
T Consensus 414 ~i~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~---------------~~~~~~~~a~~~~~ 458 (493)
T PF01039_consen 414 SILYRDELEAAEAEG--------------------ADPEAQRAEKIAEYED---------------ELSSPYRAASRGYV 458 (493)
T ss_dssp HHHTHHHHHHSCHCC--------------------HSHHHHHHHHHHHHHH---------------HHSSHHHHHHTTSS
T ss_pred eeeehhhhhhhhccc--------------------chhHHHHHHHHHHHHH---------------hcCCHHHHHhcCCC
Confidence 999998844333322 0111123333433333 33356789999999
Q ss_pred ceecCccchHHHHHHHHHHHH
Q 000086 2168 KEVVDWDKSRSFFCRRLRRRV 2188 (2304)
Q Consensus 2168 d~vi~~~~tR~~~~~~L~r~l 2188 (2304)
|+||+|++||++++..|.--.
T Consensus 459 D~ii~p~~tR~~l~~~l~~~~ 479 (493)
T PF01039_consen 459 DDIIDPAETRKVLIAALEMLW 479 (493)
T ss_dssp SEESSGGGHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHHHHHHHHHH
Confidence 999999999999999887543
No 17
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=100.00 E-value=2.1e-72 Score=715.55 Aligned_cols=416 Identities=26% Similarity=0.403 Sum_probs=363.4
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
.+|+|++..++ +||+|+|+++||||++||+|+.+++|+.+++++|.++++|+|+|.+||||||+ |++.++++
T Consensus 69 ~dgvVtG~G~v------~Gr~v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~lPlV~l~dSgGarm~--eg~~~l~~ 140 (512)
T TIGR01117 69 AEGVVTGYGTI------DGRLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGARIQ--EAVDALKG 140 (512)
T ss_pred CceEEEEEEEE------CCEEEEEEEECCcccccCCCHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCcc--ccchhhhh
Confidence 47899999876 99999999999999999999999999999999999999999999999999998 77777643
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
++++|.. +.+.||. ||+
T Consensus 141 ------------~~~~~~~----------------------------------------~~~~s~~-----------iP~ 157 (512)
T TIGR01117 141 ------------YGDIFYR----------------------------------------NTIASGV-----------VPQ 157 (512)
T ss_pred ------------HHHHHHH----------------------------------------HHHHcCC-----------CcE
Confidence 2333310 0112222 699
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecCc-ceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLDQ-PIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1860 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~~-~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~ 1860 (2304)
|++++|+|+||+||.+++||++||++++ .|+|+||++|++++|+++ ++++|||+++|. .||++|++++||.|+++.
T Consensus 158 Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aGP~vv~~~~Ge~v--~~e~lGGa~~h~~~sGv~d~~~~de~ea~~~ 235 (512)
T TIGR01117 158 ISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITGPQVIKTVTGEEV--TAEQLGGAMAHNSVSGVAHFIAEDDDDCIML 235 (512)
T ss_pred EEEEecCCCcHHHHHHHhcCceEEeccceEEEecChHHHHhhcCccc--chhhcchHHHhccccceeEEecCChHHHHHH
Confidence 9999999999999999999999999985 799999999999999999 999999999998 799999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCCCCCC----CccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCe
Q 000086 1861 ILKWLSYVPPHIGGALPIISPLDPPDRP----VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWART 1933 (2304)
Q Consensus 1861 i~~~LsylP~~~~~~~p~~~~~d~~~r~----~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~ 1933 (2304)
+|+||||||.+..+++|..++.|++.+. ..++|. ++||+|++|+. |+|+++|+|+++.||++
T Consensus 236 ~r~~ls~lp~~~~~~~p~~~~~~~~~~~~~~l~~~iP~~~~~~~d~r~~i~~-----------l~D~~sf~El~~~~g~~ 304 (512)
T TIGR01117 236 IRRLLSFLPSNNMEKAPLVKTGDDPTRETPELYDLLPDNPNKPYDMRDVITA-----------IVDNGDYLEVQPYYAPN 304 (512)
T ss_pred HHHHHHhCCcCCCCCCCCCCCCCCccccchhhhhhCCCCCCCCCCHHHHHHH-----------hCCCCceEEeeccCCCc
Confidence 9999999999988888866665666543 356888 89999999997 79999999999999999
Q ss_pred EEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCC
Q 000086 1934 VVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFS 2013 (2304)
Q Consensus 1934 vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~ 2013 (2304)
+|||+|||+|+||||||||+++. ||+|++++++|++||+++|++++||||+|+||+||+
T Consensus 305 vVtG~gri~G~~V~vvAnd~~~~---------------------~G~~~~~~~~K~~r~i~~a~~~~lPlV~lvDs~G~~ 363 (512)
T TIGR01117 305 IITCFARINGQSVGIIANQPKVM---------------------AGCLDIDSSDKIARFIRFCDAFNIPIVTFVDVPGFL 363 (512)
T ss_pred EEEEEEEECCEEEEEEEeccccc---------------------cCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCcCcc
Confidence 99999999999999999976533 899999999999999999999999999999999999
Q ss_pred CchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccchhhhhcc
Q 000086 2014 GGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFR 2092 (2304)
Q Consensus 2014 ~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r 2092 (2304)
+|..+|+.|++++++++++++++++||+|++|+ |+++||+|.+|+++ +++|+ +||||+|+++||+||++++|+||
T Consensus 364 ~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~--g~~~Gga~~am~~~~~~~d~--~~a~p~a~~~v~~pe~a~~i~~~ 439 (512)
T TIGR01117 364 PGVNQEYGGIIRHGAKVLYAYSEATVPKVTIIT--RKAYGGAYLAMCSKHLGADQ--VYAWPTAEIAVMGPAGAANIIFR 439 (512)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEc--CCCchHHHHHhccccCCCCE--EEEcCCCeEeecCHHHHHHHHhh
Confidence 999999999999999999999999999999999 67799999999765 89999 99999999999999999999998
Q ss_pred hhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecC
Q 000086 2093 TKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2172 (2304)
Q Consensus 2093 ~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~ 2172 (2304)
++. ++ ..+++ ++..+++ .+|.+...+|.+++++|+||+||+
T Consensus 440 ~~l-------------------~~---~~~~~--~~~~~~~---------------~~~~~~~~~~~~~a~~g~vD~VI~ 480 (512)
T TIGR01117 440 KDI-------------------KE---AKDPA--ATRKQKI---------------AEYREEFANPYKAAARGYVDDVIE 480 (512)
T ss_pred hhc-------------------cc---ccCHH--HHHHHHH---------------HHHHHhhcCHHHHHhcCCCCeeEC
Confidence 761 11 01111 1112222 233344557889999999999999
Q ss_pred ccchHHHHHHHHHH
Q 000086 2173 WDKSRSFFCRRLRR 2186 (2304)
Q Consensus 2173 ~~~tR~~~~~~L~r 2186 (2304)
|++||.+++..|+.
T Consensus 481 P~~tR~~l~~~l~~ 494 (512)
T TIGR01117 481 PKQTRPKIVNALAM 494 (512)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999999975
No 18
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=5e-71 Score=703.13 Aligned_cols=441 Identities=35% Similarity=0.604 Sum_probs=410.2
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|||||||+|+|+.|++++++||++|++++ +++++.+.++++.++||+++.+++..+.++|.|.+.|+++
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG~~~v-----------~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~ 69 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMGIETV-----------AVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISA 69 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCcEE-----------EEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHH
Confidence 58999999999999999999999999985 4445666888999999999998776777899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|+||||+.+|+..++..+++.|+.|+||+++++..++||..++++++++|||+|||+.
T Consensus 70 ~~~~~~d~i~p~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~-------------- 135 (447)
T PRK05586 70 TVLTGAQAIHPGFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSE-------------- 135 (447)
T ss_pred HHHcCCCEEEcCccccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g~re 282 (2304)
..+.+.+++.++++++||||||||..|+||+|+++|++.+||.++++.+..+.. .++++||+|+++++|
T Consensus 136 -------~~~~~~~e~~~~~~~igyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~e 208 (447)
T PRK05586 136 -------GEIENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKH 208 (447)
T ss_pred -------cccCCHHHHHHHHHHcCCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeE
Confidence 016788999999999999999999999999999999999999999987765421 357999999998899
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
+++++++|.+|++++++.++|+.++++||+++.+|++.+++++.++|.+.|.++++++||+|+++|||++++ +|++||+
T Consensus 209 i~v~v~~d~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g~~~~i 287 (447)
T PRK05586 209 IEFQILGDNYGNVVHLGERDCSLQRRNQKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DGNFYFM 287 (447)
T ss_pred EEEEEEECCCCCEEEEeceecceEecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999984 6789999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|+|||+|++|+++++++|+|++++++++++|.|++. .+......||++
T Consensus 288 EvNpR~~~~~~~t~~~tGid~~~~~i~~a~G~~l~~--------------------------------~~~~~~~~g~a~ 335 (447)
T PRK05586 288 EMNTRIQVEHPITEMITGVDLVKEQIKIAYGEKLSI--------------------------------KQEDIKINGHSI 335 (447)
T ss_pred EEECCCCCCccceehhhCCCHHHHHHHHHcCCCCCC--------------------------------cccccCcCceEE
Confidence 999999999999999999999999999999998863 122344569999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
++||++|+|...|.|.+|.++.+.++..++||+++.+..|..++.+|||++|+||++|+||++|++++.+||+++.|+|
T Consensus 336 ~~~i~a~~~~~~~~p~~G~~~~~~~~~~~~vr~~~~~~~g~~v~~~~~~~~~~vi~~g~~~~~a~~~~~~al~~~~~~g- 414 (447)
T PRK05586 336 ECRINAEDPKNGFMPCPGKIEELYIPGGLGVRVDSAVYSGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEFIIEG- 414 (447)
T ss_pred EEEeeccCcccCccCCCCEEEEEEcCCCCCeEeeccccCCCccCCccCchhheeEEEcCCHHHHHHHHHHHHhhcEEEC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2304)
++||++||++||.||+|++|+++|+|||+++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 445 (447)
T PRK05586 415 VNTNIDFQFIILEDEEFIKGTYDTSFIEKKL 445 (447)
T ss_pred ccCCHHHHHHHhCCHhhcCCccccHHhHhhc
Confidence 9999999999999999999999999999875
No 19
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=1.8e-69 Score=689.44 Aligned_cols=442 Identities=34% Similarity=0.588 Sum_probs=410.5
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|||||||+|+|++|+++++++|++|++|+ +++.+.+.+++++++||+++.+++..+.++|.|++.|+++
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~lG~~vv-----------~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~ 69 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKELGIKTV-----------AVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISA 69 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHcCCeEE-----------EEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHH
Confidence 68999999999999999999999999985 4444666788999999999999776777899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|+||+|+.+|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||+.
T Consensus 70 a~~~~id~I~pg~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~-------------- 135 (449)
T TIGR00514 70 AEITGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSD-------------- 135 (449)
T ss_pred HHHhCCCEEEeCCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~re 282 (2304)
..+.+.+++.++++++|||+||||..|+||+|+++|++.+||.++++.+..+ ....+++||+|+++++|
T Consensus 136 -------~~~~~~~e~~~~~~~ig~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e 208 (449)
T TIGR00514 136 -------GLVEDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRH 208 (449)
T ss_pred -------cCcCCHHHHHHHHHHhCCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeE
Confidence 0167889999999999999999999999999999999999999999876543 23467999999998899
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
+++++++|.+|+++.++.+||+++++++|+++.+|++.+++++.++|.+.+.++++++||+|++||||++++ +|++||+
T Consensus 209 ~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g~~~vi 287 (449)
T TIGR00514 209 VEIQVLADKYGNAIYLGERDCSIQRRHQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NGEFYFM 287 (449)
T ss_pred EEEEEEEcCCCCEEEEeccccCceecccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999998889999999999999999999999999999999984 6789999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|+|||++++|++++.++|+|++++++++++|.|++. .+.....+||++
T Consensus 288 EiNpR~~~~~~~~~~~tGvdl~~~~i~~a~G~~l~~--------------------------------~~~~~~~~~~a~ 335 (449)
T TIGR00514 288 EMNTRIQVEHPVTEMITGVDLIKEQIRIAAGEPLSL--------------------------------KQEDVVVRGHAI 335 (449)
T ss_pred EEECCCCCCcceeehhcCCcHHHHHHHHHCCCCCCC--------------------------------ccccCCCceEEE
Confidence 999999999999999999999999999999999863 122344569999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
++||++|||...|.|.+|.+..+.+++.|||++++.+.+|..+++++||++||||++|+||+||++++.+||++++|+|
T Consensus 336 ~~~i~~~~~~~~~~p~~g~~~~~~~~~~~gv~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~i~g- 414 (449)
T TIGR00514 336 ECRINAEDPIKTFLPSPGRITRYLPPGGPGVRWDSHVYSGYTVPPYYDSMIGKLITYGKTREVAIARMKRALSEFIIDG- 414 (449)
T ss_pred EEEeeccCCCCCeeeCCCEEEEEEcCCCCCEeeccCccCCCEeCccccccceEEEEEcCCHHHHHHHHHHHHhhcEEeC-
Confidence 9999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIA 554 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~ 554 (2304)
++||++||++||.+++|.+|+++|+|||++++
T Consensus 415 ~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~ 446 (449)
T TIGR00514 415 IKTTIPFHQRILEDENFQHGGTNIHYLEKKLG 446 (449)
T ss_pred ccCCHHHHHHHhcChhhcCCceeehhHhhhhh
Confidence 99999999999999999999999999999764
No 20
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=1.1e-67 Score=672.59 Aligned_cols=440 Identities=34% Similarity=0.578 Sum_probs=405.8
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
+.||||||+|+|++|+++|++||++|++|+ +++++.+.+++++++||+++.+|+..+.++|.|.+.|++
T Consensus 2 ~~~k~ili~~~g~~~~~~~~~~~~~G~~~v-----------~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~ 70 (445)
T PRK08462 2 KEIKRILIANRGEIALRAIRTIQEMGKEAI-----------AIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIIS 70 (445)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCEE-----------EEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHH
Confidence 458999999999999999999999999985 444566688999999999999988777889999999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
+|+++++|+|+||+|+++|+..+++.|++.|+.|+||++++++.++||..++++++++|||+|||..
T Consensus 71 ~~~~~~~D~i~pg~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~------------- 137 (445)
T PRK08462 71 AAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSD------------- 137 (445)
T ss_pred HHHHcCCCEEEECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccc
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSR 281 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~r 281 (2304)
..+.+.+++.++++++|||+||||..|+||+|+++|+|.+||.++++.+..+ .....+++|+|+++++
T Consensus 138 --------~~~~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~ 209 (445)
T PRK08462 138 --------GALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPR 209 (445)
T ss_pred --------cccCCHHHHHHHHHHcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCe
Confidence 1167889999999999999999999999999999999999999999876433 2345799999999889
Q ss_pred eeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEE
Q 000086 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2304)
Q Consensus 282 eieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yf 361 (2304)
|+++++++|..|++++++.++|+++++|+|.++++|+..++++..++|.+.+.++++++||.|++++||++++ +|++||
T Consensus 210 e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~-~g~~~v 288 (445)
T PRK08462 210 HIEVQILGDKHGNVIHVGERDCSLQRRHQKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDS-NLDFYF 288 (445)
T ss_pred EEEEEEEECCCCCEEEEEeccccceecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeC-CCCEEE
Confidence 9999999999999999999999999999999999999889999999999999999999999999999999984 568999
Q ss_pred EEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEE
Q 000086 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441 (2304)
Q Consensus 362 LEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~gha 441 (2304)
+|||||++++|+++++++|+|++++++++++|.+++.. ....+.||+
T Consensus 289 iEiNpR~~~~~~~~~~~~Gidl~~~~i~~a~G~~l~~~---------------------------------~~~~~~~~a 335 (445)
T PRK08462 289 MEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEELPSQ---------------------------------ESIKLKGHA 335 (445)
T ss_pred EEEECCcCcCcceehhhhCCCHHHHHHHHHCCCCcccc---------------------------------cccCCceeE
Confidence 99999999999999999999999999999999988631 122356999
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 442 i~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
+.+|+++|+|. .|.|.+|.+..+.++...+++++..+..|..++.+||+++|++|++|+|+++|+++|.+||++++|+|
T Consensus 336 ~~~~~~~~~~~-~~~p~~G~l~~~~~~~~~~~r~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~i~g 414 (445)
T PRK08462 336 IECRITAEDPK-KFYPSPGKITKWIAPGGRNVRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALKEFKVEG 414 (445)
T ss_pred EEEEeccCCCC-ceecccCEEeEEEcCCCCCEEEccCcCCCCEeChhhccCccEEEEEcCCHHHHHHHHHHHHHhcEEEC
Confidence 99999999985 59999999999888888889999989999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHhcCccccccccccchhhhhhh
Q 000086 522 EIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2304)
Q Consensus 522 ~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2304)
++||++||+++|.+|+|++|+++|+|||+++
T Consensus 415 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (445)
T PRK08462 415 -IKTTIPFHLEMMENADFINNKYDTKYLEEHF 445 (445)
T ss_pred -ccCCHHHHHHHhcChhhcCCceechhhhhcC
Confidence 9999999999999999999999999998763
No 21
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=2.7e-67 Score=670.28 Aligned_cols=443 Identities=35% Similarity=0.611 Sum_probs=409.9
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||+|+|+.|+++++++|++||+++ ++..+.+.++++.++||+++.+++..+.++|.|++.|+++
T Consensus 1 ~~k~iLi~g~g~~a~~i~~aa~~~G~~vv-----------~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~ 69 (451)
T PRK08591 1 MFDKILIANRGEIALRIIRACKELGIKTV-----------AVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISA 69 (451)
T ss_pred CcceEEEECCCHHHHHHHHHHHHcCCeEE-----------EEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHH
Confidence 68999999999999999999999999985 3434666788889999999988666777899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|+||+|+.+|++.++..|++.|+.|+||+++++..++||..++++++++|||+|||+.
T Consensus 70 a~~~~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~-------------- 135 (451)
T PRK08591 70 AEITGADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSD-------------- 135 (451)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcc--------------
Confidence 999999999999999999998999999999999999999999999999999999999999999853
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~re 282 (2304)
..+++.+++.++++++||||||||..|+||+|+++|+|.+||.++++.+..+ .....++||+|+++++|
T Consensus 136 -------~~v~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e 208 (451)
T PRK08591 136 -------GPVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRH 208 (451)
T ss_pred -------cccCCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcE
Confidence 0167889999999999999999999999999999999999999999987643 22457999999998899
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
+++++++|++|++++++.++|+.+++++++++.+|++.++++..++|.+.+.++++++||.|++++||++++ +|++||+
T Consensus 209 ~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g~~~vi 287 (451)
T PRK08591 209 IEIQVLADGHGNAIHLGERDCSLQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NGEFYFI 287 (451)
T ss_pred EEEEEEEcCCCCEEEEecccccceecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999999999998889999999999999999999999999999999985 7889999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|+|||++++|++++.++|+|++++++++++|.|++. .+..+.++||++
T Consensus 288 EINpR~~~~~~~~~~~~Gvdl~~~~i~~a~G~~l~~--------------------------------~~~~~~~~~~a~ 335 (451)
T PRK08591 288 EMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEPLSI--------------------------------KQEDIVFRGHAI 335 (451)
T ss_pred EEECCCCccchhhhhhhCCCHHHHHHHHHCCCCCCC--------------------------------cccccCcCceEE
Confidence 999999999999999999999999999999998863 112345579999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
++||++|||...|.|++|.+..+.+++.++|++++.+..|..++.++||++|+||++|+|+++|.+++.++|++++|+|
T Consensus 336 ~~~i~a~~~~~~~~p~~g~~~~~~~~~~~~v~~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~~~~~~~~~~l~~~~i~g- 414 (451)
T PRK08591 336 ECRINAEDPAKNFMPSPGKITRYHPPGGPGVRVDSAVYTGYTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFVIDG- 414 (451)
T ss_pred EEEEeeecCccCcccCCCEeeEEEcCCCCCeeecccccCCCCcCccccCcceEEEEEcCCHHHHHHHHHHHHhhCEEEC-
Confidence 9999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhhhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAM 555 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~ 555 (2304)
++||++||++||.+|+|++|+++|+|||++++.
T Consensus 415 ~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~ 447 (451)
T PRK08591 415 IKTTIPLHLRLLNDPNFQAGDYNIHYLEKKLAL 447 (451)
T ss_pred CCCCHHHHHHHhcCHhhhCCCcccHHHHhhhhc
Confidence 999999999999999999999999999998764
No 22
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-68 Score=628.03 Aligned_cols=438 Identities=26% Similarity=0.364 Sum_probs=374.6
Q ss_pred ccccccccCCCCCCcCCccccccCCCC--------CceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHH
Q 000086 1595 KVTELKFADDSGTWGTPLVLVERSPGL--------NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFF 1666 (2304)
Q Consensus 1595 ~~~el~~~~~~~~~~~~l~e~~r~~g~--------n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~ 1666 (2304)
++.+|++|+ |+ .|.|.+...|. |..|+|+++..+ +||.|++++||||+++||+.+.+..|+
T Consensus 68 erIdlLld~--gs---~Fie~d~fa~h~m~~~e~~ps~sIvtg~g~i------~gr~~~vianDfTv~ggs~y~i~~kk~ 136 (536)
T KOG0540|consen 68 ERIDLLLDP--GS---PFIELDQFAGHEMYGKEKVPSGSIVTGRGRI------NGRKCFVIANDFTVKGGSYYPITVKKH 136 (536)
T ss_pred hhhhhccCC--CC---cceehhhhhhhhhccccCCCCCceEeccccc------cceEEEEEccCchhcccccchhhHHHH
Confidence 566888887 41 58887777666 577899999764 999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceee
Q 000086 1667 LAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRW 1746 (2304)
Q Consensus 1667 ~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~ 1746 (2304)
.|+.+.|...++|+|||.||||||++ +.+-++- ...-|+|+|+++
T Consensus 137 lr~~e~a~~~~~p~iyL~DSgga~l~--~~~es~~---------d~~~~~~If~n~------------------------ 181 (536)
T KOG0540|consen 137 LRAQEIADNNRLPCIYLVDSGGARLP--RQAESFA---------DSYHFGRIFYNQ------------------------ 181 (536)
T ss_pred hhHHHHHhhcCCCceeEecCccccCc--chhhhcC---------Chhhhheeeeec------------------------
Confidence 99999999999999999999999999 5444430 123378888643
Q ss_pred EEEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhc
Q 000086 1747 VVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLG 1825 (2304)
Q Consensus 1747 ~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG 1825 (2304)
|...||. ||+|++|+|+|+|||||.+++.|.+||+++ +.||++||+.+++++|
T Consensus 182 ---------------n~mss~~-----------ipqis~Img~Ct~gg~y~pAm~d~~~~vk~~s~lfl~gp~lVka~tn 235 (536)
T KOG0540|consen 182 ---------------NVMSSGN-----------IPQISVIMGSCTAGGAYVPAMADETIMVKDTSTLFLAGPPLVKAATN 235 (536)
T ss_pred ---------------ceeccCC-----------CCceeEEEecccCCceecccccceeEEecCcceEEecCCchhhhhcc
Confidence 2222333 699999999999999999999999999998 6899999999999999
Q ss_pred ccccccccccCcceeec-ccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCC----CccccC---CCC
Q 000086 1826 REVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP----VEYLPE---NSC 1897 (2304)
Q Consensus 1826 ~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~----~~~~P~---~~y 1897 (2304)
++| +.++|||++.|. .+||+|..+.||.+++...|..++|+|-......+...+.|||+++ ..++|. ++|
T Consensus 236 Eev--sqedlgga~~hc~~sGv~~~~~~~dv~al~~~r~~~~~l~~~~~~~a~~p~~~~p~d~~~~eld~Iv~~~~~~~y 313 (536)
T KOG0540|consen 236 EEV--SQEDLGGADLHCTTSGVADKAAKNDVHALCLLRLKVSNLPLSEIDLAIDPGTWDPPDYDAPELDGIVPLNLTKAY 313 (536)
T ss_pred cee--ehhhcCCcceeeeeccchhhhhhccHHHHHHHHHHHccCCcccccccCCcccCCcccccchhhcccccccccccc
Confidence 999 999999999998 6999999999999999999999999997555544444445677665 457787 999
Q ss_pred ChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccC
Q 000086 1898 DPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQA 1977 (2304)
Q Consensus 1898 D~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~ 1977 (2304)
|+|++|++ ++|.+.|+|++++|++++|||||||+|+||||++|++++.
T Consensus 314 d~r~vi~~-----------iVD~~~f~E~~~~y~~tlvtGfarlnG~tVgIvgnn~kf~--------------------- 361 (536)
T KOG0540|consen 314 DVREVIAR-----------IVDGSRFFEFKPGYGDTLVTGFARLNGRTVGIVGNNPKFA--------------------- 361 (536)
T ss_pred chHhHHHh-----------hcccchhhhhccccccceeeeeeeECCEEEEEeccCchhc---------------------
Confidence 99999998 7889999999999999999999999999999999977655
Q ss_pred CCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhh
Q 000086 1978 GQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWV 2057 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~v 2057 (2304)
||+++.+++.|.||||++|++++||||+|+|.+|||+|...|..||.|+||++++|.++++||+|++|+ |.++||+|.
T Consensus 362 ~G~L~s~sa~KgarfIe~c~q~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit--~~syGG~y~ 439 (536)
T KOG0540|consen 362 GGVLFSESAVKGARFIELCDQRNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIIT--GGSYGGNYA 439 (536)
T ss_pred ccccchhhhhhhHHHHHHHHhcCCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEe--cCccCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 678999999
Q ss_pred hcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000086 2058 VVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKARE 2137 (2304)
Q Consensus 2058 v~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re 2137 (2304)
|++..+.+|+ +||||+|+|+||+.++|++|.++-.+ ++..+++++.. |
T Consensus 440 m~sr~~~gd~--~yawP~A~IavmG~~~a~~Vi~q~~~----------------------------e~a~~~~~~~~--E 487 (536)
T KOG0540|consen 440 MCSRGYSGDI--NYAWPNARIAVMGGKQAANVIFQITL----------------------------EKAVALKAPYI--E 487 (536)
T ss_pred ccccccCCce--eEEcccceeeeccccchhhhhhhhhh----------------------------hhhhhhcchHH--H
Confidence 8887799999 99999999999999999999776430 11112222221 2
Q ss_pred HhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHHHH
Q 000086 2138 KQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRV 2188 (2304)
Q Consensus 2138 ~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r~l 2188 (2304)
+.-.|+ -..++|..|+||+|.+||..+...|.-.+
T Consensus 488 ~f~npy----------------~a~~Rg~~D~II~p~~tR~vl~~~l~~~~ 522 (536)
T KOG0540|consen 488 KFGNPY----------------YAAARGWDDGIIDPSDTRKVLGLDLQAAA 522 (536)
T ss_pred HhcCcc----------------HHHHhhccccccChhHhhHHHHHHHHHHh
Confidence 224444 46677888889999999999998776543
No 23
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=100.00 E-value=8.2e-65 Score=696.47 Aligned_cols=439 Identities=33% Similarity=0.559 Sum_probs=406.0
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
|+||||+|+|++|+++|+++|++|++++ ++++|.+..+.++++||+++.+|+.+..++|.|.+.|+++|
T Consensus 1 ~~kvLI~g~Geia~~iiraak~lGi~~v-----------~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a 69 (1201)
T TIGR02712 1 FDTVLIANRGEIAVRIIRTLRRMGIRSV-----------AVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAA 69 (1201)
T ss_pred CcEEEEECCCHHHHHHHHHHHHcCCeEE-----------EEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHH
Confidence 6899999999999999999999999874 44457778899999999999998877788999999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+++++|+||||+|+++|+..+++.|++.|+.|+||++++++.++||..+|++++++|||++||+.
T Consensus 70 ~~~~idaIiPG~gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~--------------- 134 (1201)
T TIGR02712 70 KKTGAQAIHPGYGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTG--------------- 134 (1201)
T ss_pred HHHCCCEEEeCCcccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCcee---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccccee
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~rei 283 (2304)
.+++.+++.++++++||||||||..|+||+|+++|++.+|+.++++.+.... .+.++|||+|+++++|+
T Consensus 135 -------lv~s~dea~~~a~~igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~ev 207 (1201)
T TIGR02712 135 -------LLSSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHV 207 (1201)
T ss_pred -------ecCCHHHHHHHHHhcCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEE
Confidence 1678999999999999999999999999999999999999999999876432 24579999999988999
Q ss_pred eEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEE
Q 000086 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLE 363 (2304)
+|++++|+.|+++.++.+||++||++||+++++|++.+++++.++|.+.+.++++++||+|+++|||+++++++++||||
T Consensus 208 eV~v~~Dg~g~vv~lg~rd~s~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lE 287 (1201)
T TIGR02712 208 EVQIFGDGKGKVVALGERDCSLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLE 287 (1201)
T ss_pred EEEEEECCCCeEEEeeEEEeeeEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEE
Confidence 99999999999999999999999999999999999889999999999999999999999999999999986568899999
Q ss_pred eccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEE
Q 000086 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVA 443 (2304)
Q Consensus 364 INpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~ 443 (2304)
+|||+|++|+++++++|+|+++++++++.|.+++.- ...+ . ..+.||+++
T Consensus 288 VNpRlq~~~~lte~~tGvDlve~~ir~a~G~~~~~~------------------------~~~~-----~-~~~~g~ai~ 337 (1201)
T TIGR02712 288 VNTRLQVEHPVTEMVTGLDLVEWMIRIAAGELPDFA------------------------SLNI-----S-LTPRGAAIE 337 (1201)
T ss_pred EECCcCcchhhHHHHhCCCHHHHHHHHHcCCCCCcc------------------------cccc-----c-cccceEEEE
Confidence 999999999999999999999999999999987520 0000 0 135799999
Q ss_pred EEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEeccc
Q 000086 444 VRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEI 523 (2304)
Q Consensus 444 ~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v 523 (2304)
+|+++|||..+|.|++|.++.+.+++ +++++..+.+|+.|+++||+++|+||++|+||++|+++|.+||++++|+| +
T Consensus 338 ~riyae~p~~~~~p~~G~l~~v~~p~--~vrvd~~v~~G~~V~~~~d~~la~vI~~g~~r~eA~~~~~~al~~i~i~G-~ 414 (1201)
T TIGR02712 338 ARVYAENPAKNFQPSPGLLTDVQFPD--DVRVDTWVETGTEVSPEYDPMLAKIIVHGSDREDAILKLHQALAETRVYG-I 414 (1201)
T ss_pred EEEeccCcccCcCCCCceeeEEECCC--eEEEeceecCCCEECCccCCCeEEEEEEECCHHHHHHHHHHHHhceEEcC-c
Confidence 99999999999999999999888876 58888999999999999999999999999999999999999999999999 9
Q ss_pred ccCHHHHHHhcCccccccccccchhhhhh
Q 000086 524 RTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2304)
Q Consensus 524 ~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2304)
.||++||+++|.+|+|++|+++|+|||++
T Consensus 415 ~tn~~~l~~~~~~~~~~~~~~~t~~l~~~ 443 (1201)
T TIGR02712 415 ETNLDYLRSILSSETFRSAQVSTRTLNSF 443 (1201)
T ss_pred CcCHHHHHHHhcChhhcCCCccchhhhhC
Confidence 99999999999999999999999999984
No 24
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=1.8e-58 Score=589.26 Aligned_cols=444 Identities=35% Similarity=0.575 Sum_probs=400.8
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|++||||+|+|+.|++++++++++||+++ ++.++.+..+.++++||+++.+|+....++|.|.+.|+++
T Consensus 1 ~~~~ililg~g~~~~~~~~~a~~lG~~~v-----------~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~ 69 (450)
T PRK06111 1 MFQKVLIANRGEIAVRIIRTCQKLGIRTV-----------AIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEI 69 (450)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEE-----------EEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHH
Confidence 68999999999999999999999999985 3333556778889999999999876667899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|+||+|+.+|++.++..+++.|+.++||++++++.++||..++++++++|||+|||..
T Consensus 70 ~~~~~id~I~p~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~-------------- 135 (450)
T PRK06111 70 AKKTGAEAIHPGYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGIT-------------- 135 (450)
T ss_pred HHHhCCCEEEeCCCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcC--------------
Confidence 999999999999999999988889999999999999999999999999999999999999999732
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHh----hCCCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQG----EVPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~----e~~~~~i~VEeyI~g~re 282 (2304)
..+.+.+++.++++++|||+||||..|+||+|+++|++.+|+..+++.+.. .....+++||+|+++++|
T Consensus 136 -------~~~~~~~e~~~~~~~~~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e 208 (450)
T PRK06111 136 -------TNLEDAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRH 208 (450)
T ss_pred -------cCcCCHHHHHHHHHHhCCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcE
Confidence 015788999999999999999999999999999999999999999987542 223458999999998899
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
++++++++.+|+++.++.++|+++++|+++++.+|++.+++++.+++.+.+.++++++||.|++++||++++ +|++||+
T Consensus 209 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~g~~~vi 287 (450)
T PRK06111 209 IEIQLLADTHGNTVYLWERECSVQRRHQKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDE-QKNFYFL 287 (450)
T ss_pred EEEEEEEcCCCCEEEEEeecccccccccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999999999998878899999999999999999999999999999983 5569999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|+|||+++++++++.++|+|++++++++++|.|++. .+......++++
T Consensus 288 EiN~R~~~~~~~~~~~~Gvd~~~~~i~~~~G~~l~~--------------------------------~~~~~~~~~~a~ 335 (450)
T PRK06111 288 EMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEKLSF--------------------------------TQDDIKRSGHAI 335 (450)
T ss_pred EEECCcCCcchhhHHHhCcCHHHHHHHHhcCCCCCC--------------------------------ccccCCcCceEE
Confidence 999999999999999999999999999999998752 112234458899
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
.++++++++. .+.|..|.++.++++..++++++..+..|+.++.++++++|+|+++|+|+++|++++..+++.++|+|
T Consensus 336 ~~~~~~~~~~-~~~p~~G~~~~i~~~~~~~~~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~~~~~i~~~g- 413 (450)
T PRK06111 336 EVRIYAEDPK-TFFPSPGKITDLTLPGGEGVRHDHAVENGVTVTPFYDPMIAKLIAHGETREEAISRLHDALEELKVEG- 413 (450)
T ss_pred EEEEecCCCC-CcccCCCeeCeEecCCCCCEEEEecccCCCEeChhhcccceEEEEEeCCHHHHHHHHHHHHHhCEEeC-
Confidence 9999998874 57899999988877777789999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhhhhhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRV 557 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~ 557 (2304)
++||+++|+.||++|+|++|+++|+|||.++.++.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (450)
T PRK06111 414 IKTNIPLLLQVLEDPVFKAGGYTTGFLTKQLVKKS 448 (450)
T ss_pred ccCCHHHHHHHhcChhhcCCcccchHHhhhhhhhc
Confidence 99999999999999999999999999999876653
No 25
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=100.00 E-value=2.6e-43 Score=398.87 Aligned_cols=254 Identities=20% Similarity=0.287 Sum_probs=220.6
Q ss_pred CCCCCCCccccCCCc-ccchhhhhcccCccCCCCc---chhHHHHHHHHHHHhHhhhCCCCCCCCcCccccccccccCCC
Q 000086 1530 FPLVSTLASTCCNIR-SFFFSSFNLSISDCKSCSC---EKCYLQAFETALEQSWASQFPNMRPKDKALLKVTELKFADDS 1605 (2304)
Q Consensus 1530 ~p~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~ 1605 (2304)
.|+ ++|.|||+|+ .+|++++..|+++||+|+| ..-...+-...+.++|. +...++.+.++|.|.+ +
T Consensus 23 ~~e--~lw~KCp~c~~~~y~~eL~~n~~vcp~c~~h~ri~A~~Ri~~llD~gsf~-------el~~~l~~~dPL~F~d-~ 92 (294)
T COG0777 23 RPE--GLWTKCPSCGEMLYRKELESNLKVCPKCGHHMRISARERLEALLDEGSFE-------ELDSPLEPKDPLKFPD-S 92 (294)
T ss_pred CCC--CceeECCCccceeeHHHHHhhhhcccccCcccccCHHHHHHHhhCCCcce-------ecccCCCcCCcccCCc-c
Confidence 357 9999999987 9999999999999999999 22222221113444443 4447778889999988 7
Q ss_pred CCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEc
Q 000086 1606 GTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAA 1685 (2304)
Q Consensus 1606 ~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~ 1685 (2304)
++|.++|...+..+|.+++ ||++..++ +|.+++++++||.|+|||||.+.++||.|+.|+|.+.++|+|.+++
T Consensus 93 k~Y~~rL~~a~~~tg~~da-vvtg~g~i------~G~pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~a 165 (294)
T COG0777 93 KKYKDRLEAARKKTGLDDA-VVTGEGTI------NGLPVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSA 165 (294)
T ss_pred hhhHHHHHHHHhhcCCCcc-eEEEeeEE------CCeEEEEEEEeccccccchhHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 8899999999999999887 88888887 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccccccc
Q 000086 1686 NSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTG 1765 (2304)
Q Consensus 1686 s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~ 1765 (2304)
||||||| |++++||||+ +|++.+.++. +.|
T Consensus 166 SGGARMQ--Eg~lSLMQMa---------------ktsaAl~~l~----------ea~----------------------- 195 (294)
T COG0777 166 SGGARMQ--EGILSLMQMA---------------KTSAALKRLS----------EAG----------------------- 195 (294)
T ss_pred CcchhHh--HHHHHHHHHH---------------HHHHHHHHHH----------hcC-----------------------
Confidence 9999999 9999999999 6666666653 111
Q ss_pred ccccccccccccccceEEEEEcCcccch-hhhhhcccCEEEEecCcceEecChHHHHHhhcccccccccccCcceeeccc
Q 000086 1766 SGAIAGAYSRAYKETFTLTYVTGRTVGI-GAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1766 SG~iag~~s~ay~~iptis~vtg~t~G~-gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~~n 1844 (2304)
+|+|+|+|+||+|| .|++++|||++|++|++.|+|+||+||++++|+++ |++|+++|++.++
T Consensus 196 --------------lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVIEQTire~L---PegfQ~aEfLleh 258 (294)
T COG0777 196 --------------LPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVIEQTIREKL---PEGFQTAEFLLEH 258 (294)
T ss_pred --------------CceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhhhhhhcccC---CcchhhHHHHHHc
Confidence 59999999999999 89999999999999999999999999999999999 9999999999999
Q ss_pred CceEEEecCcHHHHHHHHHHHhcC
Q 000086 1845 GVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
|++|.+|+ +.|.-..+..+|+.+
T Consensus 259 G~iD~iv~-R~elr~tla~ll~~~ 281 (294)
T COG0777 259 GMIDMIVH-RDELRTTLASLLAKL 281 (294)
T ss_pred CCceeeec-HHHHHHHHHHHHHHh
Confidence 99999996 577777777777665
No 26
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=100.00 E-value=1.2e-39 Score=374.86 Aligned_cols=205 Identities=43% Similarity=0.703 Sum_probs=183.9
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2304)
||..++++|+++|||++||+. ..+++.+++.++++++||||||||+.|+||+|+++|+|
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~---------------------~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~ 59 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGST---------------------VPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHN 59 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBES---------------------SSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESS
T ss_pred CHHHHHHHHHHCCCCcCCCCC---------------------CCCCCHHHHHHHHHhcCCceEEeecccccccccccccc
Confidence 899999999999999999876 12589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCC----CCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHH
Q 000086 252 DDEVRALFKQVQGEVP----GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVK 327 (2304)
Q Consensus 252 ~eEL~~a~~~~~~e~~----~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~ 327 (2304)
.++|.++++.++.+++ ..+++||+|+++++|++||+++|++|++++++.|||+.|+++||.++++|++.++++.++
T Consensus 60 ~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~ 139 (211)
T PF02786_consen 60 EEELEEAFERAQRESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQ 139 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHH
T ss_pred hhhhhhhhhhccccCccccccceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccccccccceeEeeccccchHHHH
Confidence 9999999999988876 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000086 328 KLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 328 ~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~ 397 (2304)
+|++.|.++++++||+|++||||++++++++|||||+|||+|++||++|++||+||+++|+++|+|.+|+
T Consensus 140 ~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR~~~~~p~~e~~tg~dlv~~~~~ia~G~~L~ 209 (211)
T PF02786_consen 140 KLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPRLQREHPVTEKVTGYDLVRVQIRIALGEPLD 209 (211)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS--TTHHHHHHHHT--HHHHHHHHHTT--GS
T ss_pred HHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCCCCCcchHHHHHHCCCHHHHHHHHHCCCCCC
Confidence 9999999999999999999999999977899999999999999999999999999999999999999986
No 27
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=100.00 E-value=3.8e-40 Score=387.40 Aligned_cols=261 Identities=15% Similarity=0.201 Sum_probs=211.3
Q ss_pred cccccCCCCCCCccccCCCc-ccchhhhhcccCccCCCCc---chhHHHHHHHHHHHhHhhhCCCCCCCCcCcccccccc
Q 000086 1525 TYCYDFPLVSTLASTCCNIR-SFFFSSFNLSISDCKSCSC---EKCYLQAFETALEQSWASQFPNMRPKDKALLKVTELK 1600 (2304)
Q Consensus 1525 ~y~yd~p~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~el~ 1600 (2304)
.|.-++|+ +||.|||+|+ .+|.+++..|+++||+|+| ....+.+-.-.+..+|.+.. ..+.+.++|.
T Consensus 28 ~~~~~~p~--~lw~kc~~C~~~~~~~~l~~~~~vcp~c~~h~rltAreRI~~L~D~gSF~E~~-------~~~~~~dpl~ 98 (296)
T CHL00174 28 SWNTQKYK--HLWVQCENCYGLNYKKFLKSKMNICEQCGYHLKMSSSDRIELLIDPGTWNPMD-------EDMVSLDPIE 98 (296)
T ss_pred ccCCCCCC--CCeeECCCccchhhHHHHHHcCCCCCCCCCCcCCCHHHHHHHHccCCccEEcC-------CccCcCCCcc
Confidence 36678899 9999999987 8999999999999999999 22222221113444454432 4444556677
Q ss_pred ccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCE
Q 000086 1601 FADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPL 1680 (2304)
Q Consensus 1601 ~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~ 1680 (2304)
|+....+|..+|.+.++.+|.++ |||++..++ +||+|+|+++||||++||+|+++++|+.|+.|+|.+.++|+
T Consensus 99 f~~d~~~Y~~rl~~a~~~t~~~d-gVVtG~G~I------~Gr~v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~rlPl 171 (296)
T CHL00174 99 FHSDEEPYKDRIDSYQKKTGLTD-AVQTGIGQL------NGIPVALGVMDFQFMGGSMGSVVGEKITRLIEYATNESLPL 171 (296)
T ss_pred ccccccchHHHHHHHHhccCCCc-cEEEEEEEE------CCEEEEEEEECCcccccCcCHHHHHHHHHHHHHHHHcCCCE
Confidence 74314568889999999999987 588888776 99999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccc
Q 000086 1681 IYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGV 1760 (2304)
Q Consensus 1681 I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gv 1760 (2304)
|++.+||||||| |++.+|+||+ .+.+.+.++
T Consensus 172 V~l~~SGGARmQ--Eg~~sL~qma---------------k~saa~~~~-------------------------------- 202 (296)
T CHL00174 172 IIVCASGGARMQ--EGSLSLMQMA---------------KISSALYDY-------------------------------- 202 (296)
T ss_pred EEEECCCCcccc--ccchhhhhhH---------------HHHHHHHHH--------------------------------
Confidence 999999999998 9999998876 111111111
Q ss_pred cccccccccccccccccccceEEEEEcCcccchhhhh-hcccCEEEEecCcceEecChHHHHHhhcccccccccccCcce
Q 000086 1761 ENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYL-ARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPK 1839 (2304)
Q Consensus 1761 e~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl-~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~ 1839 (2304)
+.+| .+|+|+++||||+||+||. +++||++|+++++.|+|+||++|++++|+++ +++||+++
T Consensus 203 ---~~~~-----------~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrVIe~t~ge~l---pe~fq~ae 265 (296)
T CHL00174 203 ---QSNK-----------KLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTV---PEGSQAAE 265 (296)
T ss_pred ---HHcC-----------CCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHHHHHhcCCcC---CcccccHH
Confidence 1111 2699999999999997666 5579999999999999999999999999999 89999999
Q ss_pred eecccCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1840 IMATNGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1840 i~~~nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
++.++|++|.+|+ ..+.-..+.++|+++
T Consensus 266 ~l~~~G~vD~iV~-r~~lr~~l~~ll~~~ 293 (296)
T CHL00174 266 YLFDKGLFDLIVP-RNLLKGVLSELFQLH 293 (296)
T ss_pred HHHhCcCceEEEc-HHHHHHHHHHHHHhh
Confidence 9999999999996 677777777777765
No 28
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=1.1e-37 Score=430.04 Aligned_cols=377 Identities=18% Similarity=0.294 Sum_probs=301.9
Q ss_pred CCCccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCC
Q 000086 45 KKPIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTN 113 (2304)
Q Consensus 45 ~~~~~kILIan~G~~-----------Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~ 113 (2304)
++.++||||+|.|.+ +..+++++|++||+++ .+.++......+.++||+.+..|
T Consensus 3 ~~~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi-----------~v~~np~~~~~~~~~aD~~y~~p---- 67 (1050)
T TIGR01369 3 RTDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVI-----------LVNSNPATIMTDPEMADKVYIEP---- 67 (1050)
T ss_pred CCCCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEE-----------EEecchhhccCChhcCCEEEECC----
Confidence 355899999999974 5679999999999986 44444444456678899999876
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeCCCcCC-----CCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcC
Q 000086 114 NNNYANVQLIVEMAEMTRVDAVWPGWGHAS-----EIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTL 188 (2304)
Q Consensus 114 ~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~S-----En~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtp 188 (2304)
.+.+.|.++++++++|+|+|++|... ........|++.|+.++||+++++..+.||..++++++++|+|+|
T Consensus 68 ----~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp 143 (1050)
T TIGR01369 68 ----LTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVP 143 (1050)
T ss_pred ----CCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCC
Confidence 24688999999999999999987522 222234578889999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCC
Q 000086 189 PWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPG 268 (2304)
Q Consensus 189 p~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~ 268 (2304)
+|.. +++.+++.++++++|||+||||+.|+||+|+++|+|++||.+++.......+.
T Consensus 144 ~~~~-----------------------v~s~~e~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~ 200 (1050)
T TIGR01369 144 ESEI-----------------------AHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPI 200 (1050)
T ss_pred Ceee-----------------------cCCHHHHHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCC
Confidence 9876 78899999999999999999999999999999999999999999888776666
Q ss_pred CcEEEEEeccccceeeEEEEEcCCCCEEEeecccccccc------ccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCc
Q 000086 269 SPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQR------RHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNY 342 (2304)
Q Consensus 269 ~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqr------r~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy 342 (2304)
.+++||+|++|.+|++++++.|.+|+++.+ |++++ +..+.+..+|+..++++..++|.++|.++++++||
T Consensus 201 ~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~----~~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~ 276 (1050)
T TIGR01369 201 NQVLVEKSLAGWKEIEYEVMRDSNDNCITV----CNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGI 276 (1050)
T ss_pred CcEEEEEcccCceEEEEEEEEeCCCCEEEE----eeceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 789999999998999999999999998876 55554 23456677898778899999999999999999999
Q ss_pred eeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000086 343 VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2304)
Q Consensus 343 ~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2304)
+|.++|||+++++++++||+|+|||+++++.+++++||+|+++.++++++|.++..++. +
T Consensus 277 ~G~~~Vef~l~~~~g~~~viEiNPR~~~s~~l~s~atG~pl~~~~~~~alG~~l~~~~n--------~------------ 336 (1050)
T TIGR01369 277 EGGCNVQFALNPDSGRYYVIEVNPRVSRSSALASKATGYPIAKVAAKLAVGYGLDELKN--------P------------ 336 (1050)
T ss_pred cceeEEEEEEECCCCcEEEEEeecCcCcchhhhhHHhCCCHHHHHHHHHcCCCchhhcC--------C------------
Confidence 99999999999766889999999999999999999999999999999999999875421 0
Q ss_pred cccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCC
Q 000086 423 IATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGES 502 (2304)
Q Consensus 423 ~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~ 502 (2304)
..| ++| ..|.|+.+.|. +.+|..+.-| | .+...++..-+. .+|||+++|+|
T Consensus 337 --------------i~g---------~~~-~~~~p~~~~~~-~k~p~~~~~~-~--~~~~~~~~~~~k-~~G~v~~~g~~ 387 (1050)
T TIGR01369 337 --------------VTG---------TTP-ASFEPSLDYVV-VKIPRWDFDK-F--AGVDRKLGTQMK-SVGEVMAIGRT 387 (1050)
T ss_pred --------------CcC---------cCc-cccCcCCCeEE-EEEEeCCCCC-C--CcccCCcCcccc-eeeEEEEECCC
Confidence 001 122 23455555532 1111111000 0 011111111111 29999999999
Q ss_pred HHHHHHHHHHhhcc
Q 000086 503 RALAIANMVLGLKE 516 (2304)
Q Consensus 503 reeA~~~l~~AL~e 516 (2304)
++||..++.++|..
T Consensus 388 ~~ea~~ka~~~~~~ 401 (1050)
T TIGR01369 388 FEEALQKALRSLEI 401 (1050)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999976
No 29
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=100.00 E-value=6.2e-37 Score=383.25 Aligned_cols=373 Identities=17% Similarity=0.186 Sum_probs=291.0
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~ 129 (2304)
||||+|+|..++.++++++++||+++ ++ |.+.+++..++||+++.++ |.|.+.+.++|++
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~-----------~~--d~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~~ 60 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVI-----------AV--DRYANAPAMQVAHRSYVIN-------MLDGDALRAVIER 60 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--eCCCCCchhhhCceEEEcC-------CCCHHHHHHHHHH
Confidence 69999999999999999999999985 44 4456778889999998873 5678999999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHH-HHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~la-q~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
+++|+|+|+.+..+. .....+++.|+. +.|++++++.+.||..+++++ +++|||+|+|..
T Consensus 61 ~~id~v~~~~e~v~~--~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~---------------- 121 (380)
T TIGR01142 61 EKPDYIVPEIEAIAT--DALFELEKEGYF-VVPNARATKLTMNREGIRRLAAEELGLPTSRYMF---------------- 121 (380)
T ss_pred hCCCEEEeccCccCH--HHHHHHHhcCCe-eCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceE----------------
Confidence 999999998665432 234567778865 469999999999999999985 899999999876
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC--CCCcEEEEEeccccceeeEE
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV--PGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~--~~~~i~VEeyI~g~reieVq 286 (2304)
+.+.+++.++++++|||+||||..|+||+|+++|++.+||..+++.+.... ...+++||+|+++..|+++.
T Consensus 122 -------~~~~~~~~~~~~~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~~~E~sv~ 194 (380)
T TIGR01142 122 -------ADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDFDYEITLL 194 (380)
T ss_pred -------eCCHHHHHHHHHHcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCCCEEEEEE
Confidence 778889988889999999999999999999999999999999999875432 23579999999987899999
Q ss_pred EEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEecc
Q 000086 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2304)
Q Consensus 287 vl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2304)
++.+..|++..... ....+..+.......|+. ++++..+++.+.+.++++++|+.|++++||+++ ++++||+|+||
T Consensus 195 ~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~--~~~~~viEinp 270 (380)
T TIGR01142 195 TVRHVDGNTTFCAP-IGHRQIDGDYHESWQPQE-MSEKALEEAQRIAKRITDALGGYGLFGVELFVK--GDEVIFSEVSP 270 (380)
T ss_pred EEEcCCCCEEEecC-cceEEeCCeeEEEECCCC-CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEE--CCcEEEEEeec
Confidence 88877777544221 112222222222345765 889999999999999999999999999999998 56899999999
Q ss_pred CCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000086 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2304)
Q Consensus 367 RlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI 446 (2304)
|++++...+-..+|+|+++++++.++|.|++..+ ..+.++...+
T Consensus 271 R~~~~~~~~~~~~g~~~~~~~~r~~~G~~~~~~~------------------------------------~~~~~~~~~i 314 (380)
T TIGR01142 271 RPHDTGMVTLISQGLSEFALHVRAILGLPIPGIP------------------------------------QLGPAASAVI 314 (380)
T ss_pred CCCCCceEEeeecCCCHHHHHHHHHcCCCCCCcc------------------------------------ccCCceEEEE
Confidence 9998754444446999999999999999886310 1122333445
Q ss_pred ccCCCCCCCCCCCCcccccc----ccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000086 447 TSEDPDDGFKPTSGKVQELS----FKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2304)
Q Consensus 447 ~aEdp~~~f~P~~G~i~~l~----~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2304)
.+++ .|++..+. ....|++.+.+..++|.. ....+|||++.|+|.++|++++..+++.++|+
T Consensus 315 ~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~----~~~~~G~v~~~~~s~~~~~~~~~~~~~~i~~~ 380 (380)
T TIGR01142 315 KAKV--------TGYSPAFRGLEKALSVPNTQVRLFGKPEAY----VGRRLGVALATAKSVEAARERAEEVAHAVEVR 380 (380)
T ss_pred Eccc--------ccccchhhHHHHHHcCCCCEEEECCCCcCC----CCCcCEEEEEecCCHHHHHHHHHHHHhhccCC
Confidence 4432 23222211 223467665555555533 33569999999999999999999999988774
No 30
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=3.1e-37 Score=423.72 Aligned_cols=307 Identities=20% Similarity=0.289 Sum_probs=262.4
Q ss_pred CccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000086 47 PIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2304)
Q Consensus 47 ~~~kILIan~G~~-----------Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~ 115 (2304)
..+||||+|.|.. ++.+++++|++||+++ ++..+++..+.+..+||+.|..|
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI-----------~v~~npetvstd~~~aD~~y~~p------ 635 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETI-----------MMNSNPETVSTDYDTSDRLYFEP------ 635 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEE-----------EEeCCCccccCCcccCCeEEEEe------
Confidence 4689999999963 5679999999999986 55556667777888999999975
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcC-------------CCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHH
Q 000086 116 NYANVQLIVEMAEMTRVDAVWPGWGHA-------------SEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQA 182 (2304)
Q Consensus 116 sY~dvd~Ii~iA~~~~vDaV~pG~G~~-------------SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~ 182 (2304)
.+++.++++|+++++|+|+|++|.. +++..+++ +.+.|+.++||+++++..+.||..+++++++
T Consensus 636 --l~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~-~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~ 712 (1102)
T PLN02735 636 --LTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSA-SGNGNVKIWGTSPDSIDAAEDRERFNAILNE 712 (1102)
T ss_pred --CCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhh-hhcCCeEEECCCHHHHHHhcCHHHHHHHHHH
Confidence 5689999999999999999998843 23333333 3445899999999999999999999999999
Q ss_pred CCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHH
Q 000086 183 ANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQV 262 (2304)
Q Consensus 183 aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~ 262 (2304)
+|||+|||.. +.+.+++.++++++||||||||+.|+||+|+++|+|.+||..+++.+
T Consensus 713 ~GIp~p~~~~-----------------------v~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a 769 (1102)
T PLN02735 713 LKIEQPKGGI-----------------------ARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETA 769 (1102)
T ss_pred cCCCCCCeeE-----------------------eCCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHH
Confidence 9999999865 67889999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccc--cc-eEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Q 000086 263 QGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--HQ-KIIEEGPITVAPLETVKKLEQAARRLAKC 339 (2304)
Q Consensus 263 ~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr--~q-KiieeaPa~~l~~e~~~~m~e~A~rlaka 339 (2304)
....++.+++||+|+++++|++|++++|++|+++.....+. +.+. |. ......|+..+++++.++|.+.+.+++++
T Consensus 770 ~~~~~~~~vlVEefI~~g~Ei~V~vl~D~~G~vv~~~i~e~-~~~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~ 848 (1102)
T PLN02735 770 VEVDPERPVLVDKYLSDATEIDVDALADSEGNVVIGGIMEH-IEQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKR 848 (1102)
T ss_pred HHhcCCCCEEEEEecCCcEEEEEEEEECCCCCEEEecceEe-eeccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 87766678999999988899999999999898775433221 1100 11 01123477679999999999999999999
Q ss_pred CCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000086 340 VNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2304)
Q Consensus 340 lGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ 398 (2304)
+||+|+++|||++++ +|++||+|+|||+++++|++++++|+|++++++++++|.+|..
T Consensus 849 L~~~G~~~vqf~v~~-dg~~yviEiNpR~s~t~p~~~katGidl~~~~~~~~~G~~l~~ 906 (1102)
T PLN02735 849 LNVCGLMNCQYAITP-SGEVYIIEANPRASRTVPFVSKAIGHPLAKYASLVMSGKSLKD 906 (1102)
T ss_pred cCCcceeeEEEEEcC-CCcEEEEEEeCCCCccHHHHHHHHCCCHHHHHHHHHcCCChhh
Confidence 999999999999973 6889999999999999999999999999999999999999864
No 31
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=5.8e-36 Score=388.85 Aligned_cols=381 Identities=15% Similarity=0.183 Sum_probs=302.1
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
.+.+||+|+|+|..+..++++++++||+++ +. |.+.+++..++||+++.. +|.|.+.+.+
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi-----------~l--d~~~~apa~~~AD~~~v~-------~~~D~~~l~~ 79 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIKVK-----------VL--DPLEDCPASSVAARHVVG-------SFDDRAAVRE 79 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCCchhhhCceeeeC-------CCCCHHHHHH
Confidence 345799999999999999999999999985 34 555678889999998874 4678899999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
+|++ +|+|.....+ -+....+.+++.|+. ++|+++++..++||..+|++++++|||+|||..
T Consensus 80 ~a~~--~dvIt~e~e~--v~~~~l~~le~~gi~-v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~------------- 141 (577)
T PLN02948 80 FAKR--CDVLTVEIEH--VDVDTLEALEKQGVD-VQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFME------------- 141 (577)
T ss_pred HHHH--CCEEEEecCC--CCHHHHHHHHhcCCc-cCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEE-------------
Confidence 9998 6888754222 223455788888976 479999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceee
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE 284 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reie 284 (2304)
+.+.+++.++++++|||+||||..|| ||+|+++|++.+|+.++++.+... +.+++||+|+++.+|++
T Consensus 142 ----------v~~~~el~~~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~--~~~vlvEefI~~~~Eis 209 (577)
T PLN02948 142 ----------IDDLESAEKAGDLFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGF--ERGLYAEKWAPFVKELA 209 (577)
T ss_pred ----------eCCHHHHHHHHHhcCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCC--CCcEEEEecCCCCeEEE
Confidence 67888888889999999999999887 799999999999999999887532 45899999999889999
Q ss_pred EEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEe
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2304)
|.++.+.+|++..+ +..+..++.+.......|+. +++++.+++.+.|.+++++||++|+++|||++++ +|.+||+|+
T Consensus 210 V~v~r~~~G~i~~~-p~~E~~~~~~~~~~~~~Pa~-l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~-dG~v~v~EI 286 (577)
T PLN02948 210 VMVARSRDGSTRCY-PVVETIHKDNICHVVEAPAN-VPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLK-DGQILLNEV 286 (577)
T ss_pred EEEEECCCCCEEEe-cCcccEEECCeeEEEEECCC-CCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcC-CCcEEEEEE
Confidence 99999888887764 33455666655555667886 8899999999999999999999999999999984 678999999
Q ss_pred ccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEE
Q 000086 365 NPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAV 444 (2304)
Q Consensus 365 NpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~ 444 (2304)
|||++++..++...+++|+++.+++.++|.|++.. ....++++..
T Consensus 287 npRpg~sGh~t~ea~~~s~fe~~vRa~lGlpl~~~-----------------------------------~~~~~~A~m~ 331 (577)
T PLN02948 287 APRPHNSGHYTIEACYTSQFEQHLRAVLGLPLGDT-----------------------------------SMKVPAAIMY 331 (577)
T ss_pred eCCCCCCCceeeecccCCHHHHHHHHHcCCCCCCc-----------------------------------cccCCcEEEE
Confidence 99999765566668999999999999999998631 1112456777
Q ss_pred EEccCCCC-CCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000086 445 RVTSEDPD-DGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2304)
Q Consensus 445 RI~aEdp~-~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2304)
.+..++.. .++.+....+.. ....|++.+.+..+++.+ ....+|||++.|+|++++++++..+++.+.+.
T Consensus 332 nl~g~~~~~~g~~~~~~~~~~--~~~~p~~~v~~ygk~~~r----~~rkmGhV~~~g~~~~e~~~~~~~~~~~~~~~ 402 (577)
T PLN02948 332 NILGEDEGEAGFRLAHQLMGR--ALNIPGASVHWYGKPEMR----KQRKMGHITVVGPSAAEVEARLDQLLAEESAD 402 (577)
T ss_pred EEeccccccccccchhhHHHH--HhhCCCCEEEEecCCCCC----CCCeeEEEEEecCCHHHHHHHHHHHHhhhccC
Confidence 77776522 233333222211 122355544444444432 22579999999999999999999999866543
No 32
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=1.3e-35 Score=407.81 Aligned_cols=309 Identities=17% Similarity=0.265 Sum_probs=262.9
Q ss_pred CCCccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCC
Q 000086 45 KKPIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTN 113 (2304)
Q Consensus 45 ~~~~~kILIan~G~~-----------Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~ 113 (2304)
++.++||||+|+|++ +..+++++|+.||+|+ .+.++...-.....+||+++..|
T Consensus 20 ~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi-----------~vd~np~t~~~~~~~aD~~yi~p---- 84 (1102)
T PLN02735 20 RTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVV-----------LINSNPATIMTDPETADRTYIAP---- 84 (1102)
T ss_pred ccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEE-----------EEeCCcccccCChhhCcEEEeCC----
Confidence 456899999999986 5579999999999986 34223222222346799988765
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeCCCcCC-CCCch----HHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcC
Q 000086 114 NNNYANVQLIVEMAEMTRVDAVWPGWGHAS-EIPEL----PDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTL 188 (2304)
Q Consensus 114 ~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~S-En~~l----a~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtp 188 (2304)
.+.+.+.++++++++|+|+|++|... ++... ...|++.|+.++|++++++..+.||..++++++++|||+|
T Consensus 85 ----~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp 160 (1102)
T PLN02735 85 ----MTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTP 160 (1102)
T ss_pred ----CCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCC
Confidence 34678999999999999999876433 33111 1456788999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccC-CcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC
Q 000086 189 PWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP 267 (2304)
Q Consensus 189 p~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~ 267 (2304)
+|.. +.+.+++.++++++| |||||||+.|+||+|+.+|+|.+||..+++.+....+
T Consensus 161 ~~~~-----------------------v~s~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~ 217 (1102)
T PLN02735 161 PSGI-----------------------ATTLDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASI 217 (1102)
T ss_pred CeeE-----------------------eCCHHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCC
Confidence 9876 678899999999999 9999999999999999999999999999998876667
Q ss_pred CCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccc------cceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCC
Q 000086 268 GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR------HQKIIEEGPITVAPLETVKKLEQAARRLAKCVN 341 (2304)
Q Consensus 268 ~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr------~qKiieeaPa~~l~~e~~~~m~e~A~rlakalG 341 (2304)
.++++||+|+.|.+|+++++++|..|+++.+ |++... ....+..+|+..++++..++|+++|.+++++||
T Consensus 218 ~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~v----~~ie~~dp~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLg 293 (1102)
T PLN02735 218 TSQVLVEKSLLGWKEYELEVMRDLADNVVII----CSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIG 293 (1102)
T ss_pred CCeEEEEEecCCCeEEEEEEEEcCCCCEEEE----eeEEEEcCCccccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 7899999999988999999999988888765 433331 234566679877899999999999999999999
Q ss_pred c-eeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000086 342 Y-VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2304)
Q Consensus 342 y-~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~i 399 (2304)
+ .|.++|||++++++|++||+|+|||+++++++++++||+|+.+.++++|+|.+|+.+
T Consensus 294 i~~G~~nVqf~l~~~~g~~~ViEVNPR~s~ss~l~s~atG~~~a~~~~klalG~~l~~~ 352 (1102)
T PLN02735 294 VECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYTLDQI 352 (1102)
T ss_pred CCcCceEEEEEEECCCCcEEEEEecCCCCCcchhhhhhhCCCHHHHHHHHHCCCChhhh
Confidence 9 599999999997678999999999999999999999999999999999999999765
No 33
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=6.5e-35 Score=366.87 Aligned_cols=379 Identities=16% Similarity=0.178 Sum_probs=285.0
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
+||||+|+|..+..++++++++||+++ .+ |.+++++...+||+++.++ +.|.+.++++|+
T Consensus 13 ~~ilIiG~g~~~~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~ 72 (395)
T PRK09288 13 TRVMLLGSGELGKEVAIEAQRLGVEVI-----------AV--DRYANAPAMQVAHRSHVID-------MLDGDALRAVIE 72 (395)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCCchHHhhhheEECC-------CCCHHHHHHHHH
Confidence 589999999999999999999999985 33 3345667777899988764 457899999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHH-HHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~la-q~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
++++|+|+|+.+.... .....+++.|+.+ .|++++++.+.||..+|+++ +++|||+|+|..
T Consensus 73 ~~~id~vi~~~e~~~~--~~~~~l~~~g~~~-~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~--------------- 134 (395)
T PRK09288 73 REKPDYIVPEIEAIAT--DALVELEKEGFNV-VPTARATRLTMNREGIRRLAAEELGLPTSPYRF--------------- 134 (395)
T ss_pred HhCCCEEEEeeCcCCH--HHHHHHHhcCCee-CCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceE---------------
Confidence 9999999998664322 2345667778765 49999999999999999998 589999999876
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC--CCcEEEEEeccccceeeE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP--GSPIFIMKVASQSRHLEV 285 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~--~~~i~VEeyI~g~reieV 285 (2304)
+++.+++.++++++||||||||..|+||+|+++|+|.+|+.++++.+..... +.+++||+|++++.|+++
T Consensus 135 --------~~s~~~l~~~~~~~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~~~E~sv 206 (395)
T PRK09288 135 --------ADSLEELRAAVEEIGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDFDYEITL 206 (395)
T ss_pred --------ECCHHHHHHHHHhcCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecCCCEEEEE
Confidence 7899999999999999999999999999999999999999999998754332 368999999997789999
Q ss_pred EEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEec
Q 000086 286 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELN 365 (2304)
Q Consensus 286 qvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEIN 365 (2304)
.++.+..|........+ ..+..+.......|+. ++++..+++.+.+.++++++|++|++++||+++ ++++||+|+|
T Consensus 207 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~-l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~--~~~~~viEin 282 (395)
T PRK09288 207 LTVRAVDGGTHFCAPIG-HRQEDGDYRESWQPQP-MSPAALEEAQEIAKKVTDALGGRGLFGVELFVK--GDEVYFSEVS 282 (395)
T ss_pred EEEEcCCCCEEEecCcc-cEEECCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEe--CCeEEEEEec
Confidence 99998765555443221 1111111222235765 788999999999999999999999999999998 4589999999
Q ss_pred cCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEE
Q 000086 366 PRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVR 445 (2304)
Q Consensus 366 pRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~R 445 (2304)
||+++....+-..+|+|+++++++.++|.|++.+. + .+.+..+.
T Consensus 283 pR~~~~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~--------------------------~----------~~~~~~~~ 326 (395)
T PRK09288 283 PRPHDTGMVTLISQNLSEFELHARAILGLPIPDIR--------------------------L----------YSPAASAV 326 (395)
T ss_pred CCCCCCcceeeeecccCHHHHHHHHHcCCCCCccc--------------------------c----------cCCceeEE
Confidence 99998754443345999999999999998874210 0 11122233
Q ss_pred EccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 446 VTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 446 I~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
+.++.+.. .....|. ... ...+++.+.... .........+|||++.|+|.++|++++..+++.++|.|
T Consensus 327 ~~~~~~~~-~~~i~~~-~~~--~~~~g~~~~~~~----k~~~~~~~~lG~v~~~g~~~~~a~~~~~~~~~~i~~~~ 394 (395)
T PRK09288 327 ILAEGESA-NPSFDGL-AEA--LAVPGTDVRLFG----KPEIRGGRRMGVALATGEDVEEAREKAKEAASKVKVVG 394 (395)
T ss_pred Eecccccc-ccchhhH-HHH--hcCCCCEEEEec----CCCCCCCCeeEEEEeecCCHHHHHHHHHHHHhheeecc
Confidence 44433111 0011121 111 123454332211 11222345699999999999999999999999999988
No 34
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=100.00 E-value=2.5e-37 Score=366.35 Aligned_cols=255 Identities=18% Similarity=0.276 Sum_probs=211.6
Q ss_pred ccCCCCCCCccccCCCc-ccchhhhhcccCccCCCCc-----chhHHHHHHHHHHHhHhhhCCCCCCCCcCccccccccc
Q 000086 1528 YDFPLVSTLASTCCNIR-SFFFSSFNLSISDCKSCSC-----EKCYLQAFETALEQSWASQFPNMRPKDKALLKVTELKF 1601 (2304)
Q Consensus 1528 yd~p~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 1601 (2304)
-|+|+ +||.|||+|+ .+|.+++..|+++||+|+| ...+..++ .+..+|. +....+.+.++|.|
T Consensus 19 ~~~~~--~~~~~c~~c~~~~~~~~l~~~~~vc~~c~~h~rl~areRi~~L--~D~gsF~-------E~~~~~~~~d~l~f 87 (285)
T TIGR00515 19 AEVPE--GVWTKCPKCGQVLYTKELERNLEVCPKCDHHMRMDARERIESL--LDEGSFE-------EFNSHLEPKDPLKF 87 (285)
T ss_pred CCCCC--CCeeECCCCcchhhHHHHHhhCCCCCCCCCcCcCCHHHHHHHc--eeCCeeE-------EeCCccccCccccC
Confidence 57899 9999999987 8888899999999999999 22222222 2233333 33344556677778
Q ss_pred cCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEE
Q 000086 1602 ADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLI 1681 (2304)
Q Consensus 1602 ~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I 1681 (2304)
++ ..+|..+|.+.++.+|.++ |||++..++ +|++|+|+|||+||++||+|...++|+.|++|+|.+.++|+|
T Consensus 88 ~~-~~~Y~~~l~~~~~~t~~~d-~vVtG~g~I------~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~lPlV 159 (285)
T TIGR00515 88 KD-SKKYKDRIAKAQKETGEKD-AVVTGKGTL------YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDNCPLI 159 (285)
T ss_pred Cc-ccchhHHHHHHhhccCCCC-cEEEEEEEE------CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHcCCCEE
Confidence 76 6678889999998888865 699999876 999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccc
Q 000086 1682 YLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVE 1761 (2304)
Q Consensus 1682 ~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve 1761 (2304)
+|.+||||||| |++.+++||+ .+.....++.
T Consensus 160 ~l~dSgGaRmq--Eg~~sL~~~a---------------k~~~~~~~~~-------------------------------- 190 (285)
T TIGR00515 160 IFSASGGARMQ--EALLSLMQMA---------------KTSAALAKMS-------------------------------- 190 (285)
T ss_pred EEEcCCCcccc--cchhHHHhHH---------------HHHHHHHHHH--------------------------------
Confidence 99999999998 9999998876 1111112211
Q ss_pred ccccccccccccccccccceEEEEEcCcccchhhh-hhcccCEEEEecCcceEecChHHHHHhhcccccccccccCccee
Q 000086 1762 NLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAY-LARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKI 1840 (2304)
Q Consensus 1762 ~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAy-l~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i 1840 (2304)
. ..+|+|+++||||+||++| +++++|++||++++.|+|+||++|++++|+++ ++++|++++
T Consensus 191 ---~------------~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprVie~ti~e~l---pe~~q~ae~ 252 (285)
T TIGR00515 191 ---E------------RGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKL---PEGFQTSEF 252 (285)
T ss_pred ---c------------CCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHHHHHHhcCcc---chhcCCHHH
Confidence 0 1269999999999999655 55799999999999999999999999999999 799999999
Q ss_pred ecccCceEEEecCcHHHHHHHHHHHhcCC
Q 000086 1841 MATNGVVHLTVSDDLEGISAILKWLSYVP 1869 (2304)
Q Consensus 1841 ~~~nGv~d~~v~dd~~~~~~i~~~LsylP 1869 (2304)
+..+|++|.++ +..+....|.++|+++-
T Consensus 253 ~~~~G~vD~iv-~~~~~r~~l~~~L~~~~ 280 (285)
T TIGR00515 253 LLEHGAIDMIV-HRPEMKKTLASLLAKLQ 280 (285)
T ss_pred HHhCCCCcEEE-CcHHHHHHHHHHHHHHh
Confidence 99999999999 57899999999998763
No 35
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=100.00 E-value=5.9e-37 Score=364.79 Aligned_cols=255 Identities=19% Similarity=0.291 Sum_probs=212.2
Q ss_pred ccCCCCCCCccccCCCc-ccchhhhhcccCccCCCCc-----chhHHHHHHHHHHHhHhhhCCCCCCCCcCccccccccc
Q 000086 1528 YDFPLVSTLASTCCNIR-SFFFSSFNLSISDCKSCSC-----EKCYLQAFETALEQSWASQFPNMRPKDKALLKVTELKF 1601 (2304)
Q Consensus 1528 yd~p~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 1601 (2304)
-|+|+ +||.|||+|+ .+|.+++..|+++||+|+| ...+..++ .+..+|.+. ...+.+.++|.|
T Consensus 20 ~~~~~--~~~~~c~~c~~~~~~~~l~~~~~vc~~c~~h~rl~areRi~~L--~D~gsF~E~-------~~~~~~~d~l~f 88 (292)
T PRK05654 20 AEVPE--GLWTKCPSCGQVLYRKELEANLNVCPKCGHHMRISARERLDLL--LDEGSFVEL-------DAELEPKDPLKF 88 (292)
T ss_pred CCCCC--CCeeECCCccchhhHHHHHhcCCCCCCCCCCeeCCHHHHHHHH--ccCCccEEe-------cCccccCCcccC
Confidence 47899 9999999987 8999999999999999999 22222222 233344333 344556677888
Q ss_pred cCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEE
Q 000086 1602 ADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLI 1681 (2304)
Q Consensus 1602 ~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I 1681 (2304)
++ ...|.++|.+.++.+|.++ +||++..+| +||+|+|++||+||++||+|...++|+.|++++|.+.++|+|
T Consensus 89 ~~-~~~Y~~~l~~~~~~t~~~d-~vVtG~g~I------~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~lPlV 160 (292)
T PRK05654 89 RD-SKKYKDRLKAAQKKTGLKD-AVVTGKGTI------EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEKCPLV 160 (292)
T ss_pred Cc-ccccchHHHHhhhccCCCC-cEEEEEEEE------CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHcCCCEE
Confidence 76 5668889999998888876 499999876 999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccc
Q 000086 1682 YLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVE 1761 (2304)
Q Consensus 1682 ~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve 1761 (2304)
+|++|||+||| |++.+|+||+ + +.....++.
T Consensus 161 ~l~dsgGarmq--Egi~sL~~~a--------k-------~~~a~~~~~-------------------------------- 191 (292)
T PRK05654 161 IFSASGGARMQ--EGLLSLMQMA--------K-------TSAALKRLS-------------------------------- 191 (292)
T ss_pred EEEcCCCcchh--hhhhHHHhHH--------H-------HHHHHHHHH--------------------------------
Confidence 99999999998 9999998876 1 111111110
Q ss_pred ccccccccccccccccccceEEEEEcCcccchhhh-hhcccCEEEEecCcceEecChHHHHHhhcccccccccccCccee
Q 000086 1762 NLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAY-LARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKI 1840 (2304)
Q Consensus 1762 ~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAy-l~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i 1840 (2304)
. ..+|+|+++||||+||++| +++++|++||++++.|+|+||++|++++|+++ ++++|++++
T Consensus 192 ---~------------a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprvie~~~~e~l---pe~~~~ae~ 253 (292)
T PRK05654 192 ---E------------AGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPRVIEQTVREKL---PEGFQRAEF 253 (292)
T ss_pred ---c------------CCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHHHHHhhhhhhh---hhhhcCHHH
Confidence 0 1279999999999999655 56779999999999999999999999999988 789999999
Q ss_pred ecccCceEEEecCcHHHHHHHHHHHhcCC
Q 000086 1841 MATNGVVHLTVSDDLEGISAILKWLSYVP 1869 (2304)
Q Consensus 1841 ~~~nGv~d~~v~dd~~~~~~i~~~LsylP 1869 (2304)
+.++|++|.++ +..+....|.++|+++.
T Consensus 254 ~~~~G~vD~Vv-~~~e~r~~l~~~L~~~~ 281 (292)
T PRK05654 254 LLEHGAIDMIV-HRRELRDTLASLLALHT 281 (292)
T ss_pred HHhCCCCcEEE-CHHHHHHHHHHHHHHHh
Confidence 99999999999 58899999999999874
No 36
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=1.7e-34 Score=360.30 Aligned_cols=364 Identities=20% Similarity=0.274 Sum_probs=283.2
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
+++|+|+|+|..+..++++++++||+++ +. |.+.+++..++||+++.. +|.|.+.+.+++
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~-----------~~--d~~~~~pa~~~ad~~~~~-------~~~D~~~l~~~a 61 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVI-----------VL--DPDPDSPAAQVADEVIVA-------DYDDVAALRELA 61 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--eCCCCCchhHhCceEEec-------CCCCHHHHHHHH
Confidence 5789999999999999999999999985 34 455677888899998886 467899999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+ .+|+|.+. +...+....+.+++. ..++|++++++.++||..+|++++++|||+|||..
T Consensus 62 ~--~~dvit~e--~e~i~~~~l~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 120 (372)
T PRK06019 62 E--QCDVITYE--FENVPAEALDALAAR--VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAV--------------- 120 (372)
T ss_pred h--cCCEEEeC--cCCCCHHHHHHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceE---------------
Confidence 8 56888744 333333344556555 35789999999999999999999999999999887
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVq 286 (2304)
+.+.+++.++++++|||+|+||..|| ||+|+++|++.+|+..+++.+. ..+++||+|+++++|++|.
T Consensus 121 --------v~s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~~----~~~~ivEe~I~~~~E~sv~ 188 (372)
T PRK06019 121 --------VDSAEDLEAALADLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALLG----SVPCILEEFVPFEREVSVI 188 (372)
T ss_pred --------eCCHHHHHHHHHHcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhcC----CCCEEEEecCCCCeEEEEE
Confidence 78899999999999999999999865 8999999999999999998762 4689999999988999999
Q ss_pred EEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEecc
Q 000086 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2304)
Q Consensus 287 vl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2304)
++.+.+|+++.+.. ...+++.+.......|+. +++++.+++++.+.++++++||+|+++|||+++ .+|++||+|+||
T Consensus 189 ~~~~~~G~~~~~p~-~e~~~~~gi~~~~~~pa~-~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~-~dg~~~v~Einp 265 (372)
T PRK06019 189 VARGRDGEVVFYPL-VENVHRNGILRTSIAPAR-ISAELQAQAEEIASRIAEELDYVGVLAVEFFVT-GDGELLVNEIAP 265 (372)
T ss_pred EEECCCCCEEEeCC-cccEEeCCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCccceeEEEEEEc-CCCeEEEEEecC
Confidence 99998888876432 223333332333456875 888999999999999999999999999999998 367799999999
Q ss_pred CCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000086 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2304)
Q Consensus 367 RlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI 446 (2304)
|++++..+|..++|+|+++.+++..+|.|+... ...+.++...|
T Consensus 266 R~~~sg~~t~~~~~~sqf~~~ira~~Glpl~~~------------------------------------~~~~~~~m~ni 309 (372)
T PRK06019 266 RPHNSGHWTIEACSTSQFEQHLRAILGLPLGTT------------------------------------RLLSPAVMVNL 309 (372)
T ss_pred CccCcccEEhhhcCccHHHHHHHHHcCCCCCCc------------------------------------cccCceEEEEE
Confidence 999998889999999999999999999998521 11233555555
Q ss_pred ccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhc
Q 000086 447 TSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLK 515 (2304)
Q Consensus 447 ~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~ 515 (2304)
..++. . ..+... ....|++.+++.-++.. .....+|||.+.|+|.+++++++..+..
T Consensus 310 lg~~~---~--~~~~~~---~~~~~~~~~~~ygk~~~----~~~rk~Ghv~~~~~~~~~~~~~~~~~~~ 366 (372)
T PRK06019 310 LGDDW---L--EPRWDA---LLALPGAHLHLYGKAEA----RPGRKMGHVTVLGDDVEALLAKLEALAP 366 (372)
T ss_pred ECchh---h--hhHHHH---HhhCCCCEEEECCCCCC----CCCCceEEEEeecCCHHHHHHHHHHHHh
Confidence 54331 0 011111 11224443222111111 1233499999999999999999998876
No 37
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=3.3e-34 Score=397.03 Aligned_cols=308 Identities=19% Similarity=0.293 Sum_probs=261.6
Q ss_pred CCccEEEEECchHHH-----------HHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000086 46 KPIHSILIANNGMAA-----------VKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2304)
Q Consensus 46 ~~~~kILIan~G~~A-----------v~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~ 114 (2304)
..++||||+|+|.+. ..++++++++||+++ .+.++........++||+.+..|
T Consensus 5 ~~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi-----------~v~~~p~~~~~~~~~aD~~y~~p----- 68 (1066)
T PRK05294 5 TDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVV-----------LVNSNPATIMTDPEMADATYIEP----- 68 (1066)
T ss_pred CCCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEE-----------EEcCCcccccCCcccCCEEEECC-----
Confidence 358999999999864 479999999999986 44333322234456899988876
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeCCCcCC-CCCc--h--HHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCC
Q 000086 115 NNYANVQLIVEMAEMTRVDAVWPGWGHAS-EIPE--L--PDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189 (2304)
Q Consensus 115 ~sY~dvd~Ii~iA~~~~vDaV~pG~G~~S-En~~--l--a~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp 189 (2304)
.+.+.|.++++++++|+|+|+.|... .+.. + ...|++.|+.++||++++++.+.||..++++++++|||+|+
T Consensus 69 ---~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~ 145 (1066)
T PRK05294 69 ---ITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPR 145 (1066)
T ss_pred ---CCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCC
Confidence 34799999999999999999977533 2211 1 13577889999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCC
Q 000086 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 269 (2304)
Q Consensus 190 ~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~ 269 (2304)
|.. +.+.+++.++++++|||+||||+.|.||+|+++|++.+||.+++++.....+..
T Consensus 146 ~~~-----------------------v~s~~e~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~ 202 (1066)
T PRK05294 146 SGI-----------------------AHSMEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVT 202 (1066)
T ss_pred eee-----------------------eCCHHHHHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCC
Confidence 876 788999999999999999999999999999999999999999998776655567
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccc-----c-ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCce
Q 000086 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR-----H-QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343 (2304)
Q Consensus 270 ~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr-----~-qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~ 343 (2304)
+++||+|++|.+|+++.++.|++|+++.+ |..++. | ..++..+|+..++++..+++++.|.++++++||+
T Consensus 203 ~vlvEe~I~G~~Eisv~v~rd~~g~~~~~----~~~e~~dp~gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~ 278 (1066)
T PRK05294 203 EVLIEESLLGWKEYEYEVMRDKNDNCIIV----CSIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVE 278 (1066)
T ss_pred eEEEEEcccCceEEEEEEEEcCCCCEEEE----eeeeeccccceecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 89999999998999999999999999876 333322 2 2345567886688899999999999999999999
Q ss_pred -eeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000086 344 -GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2304)
Q Consensus 344 -Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~i 399 (2304)
|+++|||++++.++++||+|+|||++++..++..++|+|+....+++++|.++..+
T Consensus 279 ~G~~~vef~~~~~~g~~~viEiNPR~~~s~~~~s~~tG~pl~~~~~~~~lG~~l~~m 335 (1066)
T PRK05294 279 TGGCNVQFALNPKDGRYIVIEMNPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEI 335 (1066)
T ss_pred cCceEEEEEEECCCCcEEEEEeecCCCcceeeeeHhhCCCHHHHHHHHHcCCChHHh
Confidence 99999999997678899999999999999998889999999999999999988654
No 38
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=100.00 E-value=1.1e-32 Score=341.92 Aligned_cols=293 Identities=22% Similarity=0.297 Sum_probs=246.9
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~ 129 (2304)
+|+|+|+|..+..++++++++||+++ ++ |.+.+++..++||+++.. +|.|.+.|.+++++
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~-----------~~--d~~~~~p~~~~ad~~~~~-------~~~d~~~i~~~a~~ 60 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVH-----------VL--DPDANSPAVQVADHVVLA-------PFFDPAAIRELAES 60 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--CCCCCCChhHhCceeEeC-------CCCCHHHHHHHHhh
Confidence 48999999999999999999999985 44 556778889999998853 56788999999986
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcc
Q 000086 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2304)
Q Consensus 130 ~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~ 209 (2304)
. |.|.+.+++.+ ......+++.|+. ++|++++++.++||..++++++++|||+|+|..
T Consensus 61 ~--dvit~e~e~i~--~~~l~~l~~~g~~-~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~----------------- 118 (352)
T TIGR01161 61 C--DVITFEFEHVD--VEALEKLEARGVK-LFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLV----------------- 118 (352)
T ss_pred C--CEEEeCcCcCC--HHHHHHHHhCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccE-----------------
Confidence 5 77765433322 2245777888865 569999999999999999999999999999886
Q ss_pred cccccccCCHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000086 210 VYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2304)
Q Consensus 210 ~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl 288 (2304)
+.+.+++.++++++|||+|+||..|+ ||+|+++|++.+|+.++++.+. ..++++|||+++++|++|.++
T Consensus 119 ------~~~~~~~~~~~~~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~----~~~~lvEe~I~~~~E~sv~~~ 188 (352)
T TIGR01161 119 ------IKDEEELDAALQELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKELG----DRECIVEEFVPFERELSVIVA 188 (352)
T ss_pred ------eCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcC----CCcEEEEecCCCCeEEEEEEE
Confidence 77889999999999999999999987 9999999999999999988753 358999999997899999999
Q ss_pred EcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCC
Q 000086 289 CDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRL 368 (2304)
Q Consensus 289 ~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRl 368 (2304)
.+.+|++..+ ......++.+.......|+. +++++.+++.+.+.++++++||+|++++||++++ +|++||+|+|||+
T Consensus 189 ~~~~G~~~~~-~~~~~~~~~g~~~~~~~p~~-~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~-dg~~~v~EinpR~ 265 (352)
T TIGR01161 189 RSADGETAFY-PVVENIHQDGILRYVVAPAA-VPDAIQARAEEIARRLMEELGYVGVLAVEMFVLP-DGRLLINELAPRV 265 (352)
T ss_pred EcCCCCEEEE-CCcccEEeCCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CCcEEEEEecCCC
Confidence 8888886653 33333333333333456775 7888899999999999999999999999999984 6679999999999
Q ss_pred CCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000086 369 QVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 369 qgehpvtE~vtGVDL~~~qL~iA~G~pL~ 397 (2304)
+++..++...++++.++.+++.++|.|++
T Consensus 266 ~~sg~~~~~~~~~s~f~~~~ra~~g~~l~ 294 (352)
T TIGR01161 266 HNSGHYTLDGCSTSQFEQHLRAILGLPLG 294 (352)
T ss_pred CCcCcCchhhccccHHHHHHHHHcCCCCC
Confidence 99988888899999999999999999986
No 39
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=7.5e-33 Score=382.31 Aligned_cols=308 Identities=18% Similarity=0.287 Sum_probs=257.9
Q ss_pred CCccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000086 46 KPIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2304)
Q Consensus 46 ~~~~kILIan~G~~-----------Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~ 114 (2304)
+.++||||+|+|.+ +..++++++++||+++ .+.++...-.....+||..+..|
T Consensus 5 ~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi-----------~v~~np~~~~~d~~~ad~~y~ep----- 68 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVV-----------LVNPNPATIMTDPAPADTVYFEP----- 68 (1068)
T ss_pred CCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEE-----------EEeCCcchhhcCcccCCeeEECC-----
Confidence 46899999999986 5689999999999986 33222211111224788877654
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeCCCcCC-CCCch----HHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCC
Q 000086 115 NNYANVQLIVEMAEMTRVDAVWPGWGHAS-EIPEL----PDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189 (2304)
Q Consensus 115 ~sY~dvd~Ii~iA~~~~vDaV~pG~G~~S-En~~l----a~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp 189 (2304)
.+.+.+.++++++++|+|+|++|... .+... ...|++.|+.++||+++++..+.||..++++++++|||+|+
T Consensus 69 ---~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~ 145 (1068)
T PRK12815 69 ---LTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPE 145 (1068)
T ss_pred ---CCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCC
Confidence 34799999999999999999876432 22111 12467789999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCC
Q 000086 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 269 (2304)
Q Consensus 190 ~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~ 269 (2304)
|.. +++.+++.++++++|||+||||+.|.||+|+.+|+|.+||.++++......+..
T Consensus 146 ~~~-----------------------v~s~ee~~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~ 202 (1068)
T PRK12815 146 SEI-----------------------VTSVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIH 202 (1068)
T ss_pred cee-----------------------eCCHHHHHHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCC
Confidence 876 788999999999999999999999999999999999999999998887666567
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccc------eEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCce
Q 000086 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ------KIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343 (2304)
Q Consensus 270 ~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~q------KiieeaPa~~l~~e~~~~m~e~A~rlakalGy~ 343 (2304)
+++||+|++|.+|+++.++.|..|+++.+ |...+.+. ..+..+|+..++++..++|++.|.++++++|++
T Consensus 203 ~vLVEe~I~G~~E~sv~v~rD~~g~~~~~----~~~e~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~ 278 (1068)
T PRK12815 203 QCLLEESIAGWKEIEYEVMRDRNGNCITV----CNMENIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVV 278 (1068)
T ss_pred eEEEEEccCCCeEEEEEEEEcCCCCEEEE----EeceecccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 89999999998999999999999998876 43333221 123346886688999999999999999999999
Q ss_pred eeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000086 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2304)
Q Consensus 344 Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~i 399 (2304)
|.++|||+++++++++|++|+|||++++..++..++|+++.+..+++++|.+|+.|
T Consensus 279 G~~~vef~l~~~~g~~~ViEINPR~~~s~~l~~~atG~pl~~~~~~~alG~~l~ei 334 (1068)
T PRK12815 279 GGCNIQFALDPKSKQYYLIEVNPRVSRSSALASKATGYPIAKIAAKLAVGYTLNEL 334 (1068)
T ss_pred CceEEEEEEECCCCcEEEEEEecCcccchhhhhHhhCCcHHHHHHHHHcCCChHHh
Confidence 99999999997567899999999999999999999999999999999999998765
No 40
>PRK07206 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-32 Score=346.37 Aligned_cols=381 Identities=15% Similarity=0.141 Sum_probs=274.8
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCC-ChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRIN-AEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~-a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
||++|||++.+..+..++++++++||+++ ++....+.... ......+|....++ +.|.+.+++
T Consensus 1 ~~k~~liv~~~~~~~~~~~a~~~~G~~~v---------~v~~~~~~~~~~~~~~~~~~~~~~i~-------~~~~~~l~~ 64 (416)
T PRK07206 1 MMKKVVIVDPFSSGKFLAPAFKKRGIEPI---------AVTSSCLLDPYYYASFDTSDFIEVII-------NGDIDDLVE 64 (416)
T ss_pred CCCeEEEEcCCchHHHHHHHHHHcCCeEE---------EEEcCCCCchhhhcccCcccchhhhc-------CCCHHHHHH
Confidence 78999999999999999999999999985 33332221110 11223344333332 256899999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHH-CCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLST-KGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~-~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~ 204 (2304)
+++++++|+|+||..... .++..+.+ .|+. .|++++++..++||..|+++++++|||+|++..
T Consensus 65 ~~~~~~~d~vi~~~e~~~---~~~a~l~~~l~l~-~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~------------ 128 (416)
T PRK07206 65 FLRKLGPEAIIAGAESGV---ELADRLAEILTPQ-YSNDPALSSARRNKAEMINALAEAGLPAARQIN------------ 128 (416)
T ss_pred HHHHcCCCEEEECCCccH---HHHHHHHHhcCCC-cCCChhhHHHhhCHHHHHHHHHHcCCCcccEEe------------
Confidence 999999999999854322 23444443 4543 389999999999999999999999999999876
Q ss_pred ccCcccccccccCCHHHHHHHhhccCC---cEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh-----CCCCcEEEEEe
Q 000086 205 TIPDDVYRQACVYTTEEAIASCQVVGY---PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE-----VPGSPIFIMKV 276 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGy---PVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e-----~~~~~i~VEey 276 (2304)
+.+.+++.++++++|| |+||||..|+||+||++|+|.+|+.++++++... ..+..++||+|
T Consensus 129 -----------~~~~~e~~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~ 197 (416)
T PRK07206 129 -----------TADWEEAEAWLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEY 197 (416)
T ss_pred -----------cCCHHHHHHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEc
Confidence 6788999999999998 9999999999999999999999999999987643 12468999999
Q ss_pred ccccceeeEEEEEcCCCCEEEee--ccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCce-eeeEEEEEEE
Q 000086 277 ASQSRHLEVQLLCDQYGNVAALH--SRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV-GAATVEYLYS 353 (2304)
Q Consensus 277 I~g~reieVqvl~D~~G~vi~l~--~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~-Ga~tVEfl~d 353 (2304)
++| .|++|+++.. .|+++... .+..........+.........+....+++.+.+.++++++|+. |++|+||+++
T Consensus 198 i~G-~E~sv~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~ 275 (416)
T PRK07206 198 LIG-TEYVVNFVSL-DGNHLVTEIVRYHKTSLNSGSTVYDYDEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLT 275 (416)
T ss_pred ccc-EEEEEEEEEE-CCEEEEEEeEEeeecccCCCCceecccccCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEc
Confidence 987 7999998874 35654321 11000000011111111111134677889999999999999995 9999999998
Q ss_pred ccCCcEEEEEeccCCCCCc--ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccc
Q 000086 354 METGEYYFLELNPRLQVEH--PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQ 431 (2304)
Q Consensus 354 ~~~g~~yfLEINpRlqgeh--pvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~ 431 (2304)
+++++++|||||++|.. .+++.++|+|+.+++++.++|.+....+ .
T Consensus 276 --~~g~~liEin~R~~G~~~~~~~~~~~G~d~~~~~~~~~lg~~~~~~~------------------------------~ 323 (416)
T PRK07206 276 --ADGPRLIEIGARLDGGLHPDVARLATGDSQLDATVESLADPDVFRET------------------------------L 323 (416)
T ss_pred --CCCCEEEEECCccCCCCccchhhhhcCcCHHHHHHHHHhCchhhccc------------------------------c
Confidence 56799999999999874 5678999999999999999997642100 0
Q ss_pred cCCCCCceEEEEEEEccCCCCCCCCCCCCcccccc----ccCCCcE-EEEEeeeeCCcccccCC--CccEEEEEEeCCHH
Q 000086 432 AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS----FKSKPNV-WAYFSVKSGGGIHEFSD--SQFGHVFAFGESRA 504 (2304)
Q Consensus 432 ~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~----~~s~~~V-~~~~~v~~G~~i~~~~D--s~~g~via~G~~re 504 (2304)
.....+.+|+....+.+ |..|++..+. +...|+| .+.+.+..|+.+....| +.+|+|++.|+|.+
T Consensus 324 ~~~~~~~~~~~~~~~~~--------~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~v~~~~d~~~~~g~v~~~~~~~~ 395 (416)
T PRK07206 324 REGYRLKAHVFNVFLIS--------PAAGVFSNVEFLEEIQKLPSFKKSHIYVKEGDYVPQTVDLFSQPGTVYLVHKDKE 395 (416)
T ss_pred CCCcChhhceEEEEEec--------CCCceEeCCccHHHHHhCCchhheEEecCCCCCccCceecCCCCEEEEEEcCCHH
Confidence 00112234443333322 3467777664 2334555 45666889999988766 45999999999999
Q ss_pred HHHHHHHH
Q 000086 505 LAIANMVL 512 (2304)
Q Consensus 505 eA~~~l~~ 512 (2304)
++......
T Consensus 396 ~~~~~~~~ 403 (416)
T PRK07206 396 QLWQDYEK 403 (416)
T ss_pred HHHHHHHH
Confidence 99887654
No 41
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=1.8e-32 Score=378.58 Aligned_cols=327 Identities=20% Similarity=0.338 Sum_probs=267.6
Q ss_pred ccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCC
Q 000086 48 IHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNN 116 (2304)
Q Consensus 48 ~~kILIan~G~~-----------Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~s 116 (2304)
.+||||+|.|.. +++++++++++||+++ .+..+...-+.....+|+.+.-|
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI-----------~v~~npetvs~d~~~~D~ly~ep------- 615 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETI-----------MINYNPETVSTDYDTSDRLYFEP------- 615 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHhCCCEEE-----------EEecCCccccccccccceEEEec-------
Confidence 479999999975 7899999999999986 33223333344556789877643
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCcc
Q 000086 117 YANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVK 196 (2304)
Q Consensus 117 Y~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~ 196 (2304)
.+.+.++++++++++|+|++++|.... ..++..|++.|++++|++++++..+.||..++++++++|||+|+|..
T Consensus 616 -~~~e~vl~i~~~e~idgVI~~~gg~~~-~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~---- 689 (1050)
T TIGR01369 616 -LTFEDVMNIIELEKPEGVIVQFGGQTP-LNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKT---- 689 (1050)
T ss_pred -CCHHHHHHHHhhcCCCEEEEccCcHhH-HHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEE----
Confidence 347999999999999999999875432 24678888999999999999999999999999999999999999876
Q ss_pred CCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEe
Q 000086 197 IPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKV 276 (2304)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEey 276 (2304)
+.+.+|+.++++++|||+||||+.++||+|+.+|+|.+||..+++++....++.+++||+|
T Consensus 690 -------------------v~s~ee~~~~~~~igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeef 750 (1050)
T TIGR01369 690 -------------------ATSVEEAVEFASEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKY 750 (1050)
T ss_pred -------------------ECCHHHHHHHHHhcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeec
Confidence 7899999999999999999999999999999999999999999999877677789999999
Q ss_pred ccccceeeEEEEEcCCCCEEEeeccccccccc--cc-eEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEE
Q 000086 277 ASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--HQ-KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYS 353 (2304)
Q Consensus 277 I~g~reieVqvl~D~~G~vi~l~~RdcSvqrr--~q-KiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d 353 (2304)
+++++|++|++++|+ |+++.....+. +.+. |. ......|+..++++..++|.+.+.++++++|+.|++++||+++
T Consensus 751 I~~G~E~~Vd~l~d~-g~v~i~~i~e~-~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~ 828 (1050)
T TIGR01369 751 LEDAVEVDVDAVSDG-EEVLIPGIMEH-IEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVK 828 (1050)
T ss_pred CCCCeEEEEEEEEeC-CEEEEEEEEEe-ecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEE
Confidence 997899999999986 55544321110 0010 11 1122346666888999999999999999999999999999998
Q ss_pred ccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCch-----------------hhhhcccccCCCcccc
Q 000086 354 METGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP-----------------EIRRFYGMEHGGVYDA 416 (2304)
Q Consensus 354 ~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ip-----------------dir~~yg~~~~~~~~~ 416 (2304)
++++|+||+|||++++.|+++.++|+|++++.+++++|.++..+. .+.+|-|.++. ++++
T Consensus 829 --~~~~yvIEvNpR~s~t~p~vs~atGi~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vK~p~f~~~~~~~~d~~-lg~e 905 (1050)
T TIGR01369 829 --DGEVYVIEVNPRASRTVPFVSKATGVPLIKLATRVMLGKKLEELGVGKEKEPKYVAVKEPVFSFSKLAGVDPV-LGPE 905 (1050)
T ss_pred --CCeEEEEEEeCCCCchHHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCCeEEEEeccCChhhcCCCCCc-CCce
Confidence 689999999999999999999999999999999999999876431 24445555554 4566
Q ss_pred cccccc
Q 000086 417 WRKTSV 422 (2304)
Q Consensus 417 ~~~~~~ 422 (2304)
||+||.
T Consensus 906 mkstge 911 (1050)
T TIGR01369 906 MKSTGE 911 (1050)
T ss_pred eEecCc
Confidence 666664
No 42
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=100.00 E-value=1.3e-31 Score=339.96 Aligned_cols=383 Identities=19% Similarity=0.211 Sum_probs=266.3
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
.||||+|+|..+..+++++++.|+.+. ++..+. +.... .++....+.. ++.|.+.|+++|+
T Consensus 1 ~kiliiG~G~~~~~l~~~~~~~~~~~~---------~~~~~~----~~~~~-~~~~~~~~~~-----~~~d~~~l~~~~~ 61 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQSPLVKY---------VYVAPG----NAGTA-RLAKNKNVAI-----SITDIEALVEFAK 61 (423)
T ss_pred CEEEEECCChHHHHHHHHHHhCCCccE---------EEEECC----CHHHh-hhcccccccC-----CCCCHHHHHHHHH
Confidence 389999999999999999999886542 223322 22222 2232222211 4578999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
++++|+|+++.+... ...+++.+++.|++++||++++++.+.||..++++++++|||+|+|..
T Consensus 62 ~~~id~vi~~~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~---------------- 124 (423)
T TIGR00877 62 KKKIDLAVIGPEAPL-VLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEV---------------- 124 (423)
T ss_pred HhCCCEEEECCchHH-HHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEE----------------
Confidence 999999999854211 123567888899999999999999999999999999999999999876
Q ss_pred ccccccccCCHHHHHHHhhccCCc-EEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC---CCCcEEEEEeccccceee
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV---PGSPIFIMKVASQSRHLE 284 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~---~~~~i~VEeyI~g~reie 284 (2304)
+.+.+++.++++++||| +|+||..|+||+|+++|++.+|+.++++++.... ++.+++||+|++| .|++
T Consensus 125 -------~~~~~~~~~~~~~~g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~s 196 (423)
T TIGR00877 125 -------FTDPEEALSYIQEKGAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDG-EEVS 196 (423)
T ss_pred -------ECCHHHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccC-ceEE
Confidence 77899999999999999 9999999999999999999999999998876542 2457999999987 7999
Q ss_pred EEEEEcCCCCEEEeeccccccccccceEE------------EeCCCCCCCHHHHHHH-HHHH---HHHHHHCC--ceeee
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRHQKII------------EEGPITVAPLETVKKL-EQAA---RRLAKCVN--YVGAA 346 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~qKii------------eeaPa~~l~~e~~~~m-~e~A---~rlakalG--y~Ga~ 346 (2304)
|.++.|+. .+..+. +.+.+++.. ...|++.++++...++ .+.+ .+.+.++| |+|++
T Consensus 197 v~~~~dg~-~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~ 270 (423)
T TIGR00877 197 LLAFVDGK-TVIPMP-----PAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVL 270 (423)
T ss_pred EEEEEcCC-eEEece-----eeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEE
Confidence 99999863 343322 112222221 2346555666655443 3334 44444444 78999
Q ss_pred EEEEEEEccCCcEEEEEeccCCCCCcc-eehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccccc
Q 000086 347 TVEYLYSMETGEYYFLELNPRLQVEHP-VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIAT 425 (2304)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqgehp-vtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i 425 (2304)
++||+++ ++++|++|+|||+++... .....+++|+.+++++++.|.. +.++ +
T Consensus 271 ~ie~~~t--~~g~~viEin~R~g~~~~~~~~~~~~~dl~~~~~~~~~g~l-~~~~------------------------~ 323 (423)
T TIGR00877 271 YAGLMLT--KEGPKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVEGKL-DEVE------------------------L 323 (423)
T ss_pred EEEEEEE--CCCcEEEEEEccCCCccceeEecccCCCHHHHHHHHHcCCC-CCCC------------------------c
Confidence 9999999 445999999999987532 2333467999999999999952 1110 1
Q ss_pred CCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCcccccc---ccCCCcEEEE-EeeeeCCcccccCCCccEEEEEEeC
Q 000086 426 PFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS---FKSKPNVWAY-FSVKSGGGIHEFSDSQFGHVFAFGE 501 (2304)
Q Consensus 426 ~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~---~~s~~~V~~~-~~v~~G~~i~~~~Ds~~g~via~G~ 501 (2304)
.| ..+.++.+.+.+.. +-...++...+. ....+++.++ .++.....-.....+++|+|++.|+
T Consensus 324 ~~---------~~~~a~~~~~~~~~----yp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vi~~g~ 390 (423)
T TIGR00877 324 RF---------DNRAAVTVVLASEG----YPGDYRKGDPITGEPLIEAEGVKVFHAGTKQDNGKLVTSGGRVLAVTALGK 390 (423)
T ss_pred eE---------CCCceEEEEEecCC----cCCCCCCCCEeeCCcccccCCCEEEECceeccCCEEEEcCCEEEEEEEecC
Confidence 11 11233334443322 101122222222 1122344332 1222111111234577999999999
Q ss_pred CHHHHHHHHHHhhcceEEec
Q 000086 502 SRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 502 ~reeA~~~l~~AL~el~I~G 521 (2304)
|+++|++++.++++.+++.|
T Consensus 391 ~~~~a~~~~~~~~~~i~~~~ 410 (423)
T TIGR00877 391 SLEEARERAYEAVEYIKFEG 410 (423)
T ss_pred CHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999987
No 43
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.2e-31 Score=340.21 Aligned_cols=374 Identities=18% Similarity=0.218 Sum_probs=264.1
Q ss_pred EEEEECchHHHHHHHHHHHHcC-CcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWA-YETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~G-y~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
||||+|+|.....++.++++.+ +.++ ++.+ .|....+.++ .+.+ ++.|.+.|+++|+
T Consensus 2 kvliiG~G~~~~~l~~~l~~~~~~~~i----------~~~~----~n~g~~~~~~-~~~~-------~~~d~~~l~~~~~ 59 (420)
T PRK00885 2 KVLVIGSGGREHALAWKLAQSPLVEKV----------YVAP----GNAGTALLAE-NVVI-------DVTDIEALVAFAK 59 (420)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEE----------EEeC----CCHHHHhhcc-ccCC-------CCCCHHHHHHHHH
Confidence 8999999998888999998864 3332 1222 1233333333 2222 4578999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
++++|+|++|.+... ...+.+.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 60 ~~~id~vi~~~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~---------------- 122 (420)
T PRK00885 60 EEGIDLTVVGPEAPL-VAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYET---------------- 122 (420)
T ss_pred HhCCCEEEECCchHH-HHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEE----------------
Confidence 999999998843221 113457788899999999999999999999999999999999999876
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceee
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLE 284 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~reie 284 (2304)
+.+.+++.++++++|||+||||..|+||+|+++|+|.+|+.++++.+.... .+.+++||+|++| +|++
T Consensus 123 -------~~~~~~~~~~~~~~~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G-~E~s 194 (420)
T PRK00885 123 -------FTDAEEALAYLDEKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDG-EEAS 194 (420)
T ss_pred -------eCCHHHHHHHHHHcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCC-cEEE
Confidence 778999999999999999999999999999999999999999999876432 2458999999987 8999
Q ss_pred EEEEEcCCCCEEEeeccccccccccceEE------------EeCCCCCCCHHHHHHHHH-HHHHHHH---HCC--ceeee
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRHQKII------------EEGPITVAPLETVKKLEQ-AARRLAK---CVN--YVGAA 346 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~qKii------------eeaPa~~l~~e~~~~m~e-~A~rlak---alG--y~Ga~ 346 (2304)
|.++.|+. .+..+. ..+.|++.. ...|++.++++..+++.+ .+.++.+ ++| |+|+.
T Consensus 195 v~~~~~g~-~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~ 268 (420)
T PRK00885 195 FFAFVDGE-NVLPLP-----TAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVL 268 (420)
T ss_pred EEEEECCC-ceEece-----eeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEE
Confidence 99999763 444332 122232221 225666677777766654 5555444 444 68999
Q ss_pred EEEEEEEccCCcEEEEEeccCCCCC-cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccccc
Q 000086 347 TVEYLYSMETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIAT 425 (2304)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqge-hpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i 425 (2304)
++||+++ ++++|++|+|||+++. +......++.|+..++++++.|.+... ++
T Consensus 269 ~ve~~~t--~~g~~viEin~R~g~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~-------------------------~~ 321 (420)
T PRK00885 269 YAGLMIT--KDGPKVIEFNARFGDPETQVVLPRLKSDLVELLLAAADGKLDEV-------------------------EL 321 (420)
T ss_pred EEEEEEE--CCCcEEEEEecccCCccHHhhhhhccCCHHHHHHHHHcCCCCCC-------------------------Cc
Confidence 9999999 5679999999999864 434445567899999999999965421 11
Q ss_pred CCCccccCCCCCceEEEEEEE----ccCCCCCCCCCCCCc-cccccccCCCcEEEE-Eeee-eCCcccccCCCccEEEEE
Q 000086 426 PFDFDQAESTRPKGHCVAVRV----TSEDPDDGFKPTSGK-VQELSFKSKPNVWAY-FSVK-SGGGIHEFSDSQFGHVFA 498 (2304)
Q Consensus 426 ~f~~~~~~~~~~~ghai~~RI----~aEdp~~~f~P~~G~-i~~l~~~s~~~V~~~-~~v~-~G~~i~~~~Ds~~g~via 498 (2304)
.|. ++.++.+.+ |+++|. .|. |..+ +...++.++ .++. .++.+. ...+++++|++
T Consensus 322 ~~~---------~~~a~~~~~~~~gy~~~~~------~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~-~~g~R~~~vi~ 383 (420)
T PRK00885 322 EWD---------DRAAVGVVLAAKGYPGDYR------KGDVITGL--EAADADKVFHAGTKLEDGKLV-TNGGRVLCVTA 383 (420)
T ss_pred eEC---------CCcEEEEEEeCCCCCCCCC------CCCEeecc--cccCCCEEEECceeccCCeEE-EeCCEEEEEEE
Confidence 111 122333333 333332 222 1111 100111111 1222 112211 23467999999
Q ss_pred EeCCHHHHHHHHHHhhcceEEec
Q 000086 499 FGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 499 ~G~~reeA~~~l~~AL~el~I~G 521 (2304)
.|+|++||+++++++++.+++.|
T Consensus 384 ~g~t~~eA~~~a~~~~~~i~~~~ 406 (420)
T PRK00885 384 LGDTLEEAQKRAYAALDKIDFDG 406 (420)
T ss_pred ecCCHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999987
No 44
>PLN02257 phosphoribosylamine--glycine ligase
Probab=100.00 E-value=1.9e-31 Score=337.39 Aligned_cols=382 Identities=20% Similarity=0.199 Sum_probs=273.9
Q ss_pred EEECchHHHHHHHHHHHHcC--CcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000086 52 LIANNGMAAVKFIRSIRTWA--YETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2304)
Q Consensus 52 LIan~G~~Av~iIrsar~~G--y~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~ 129 (2304)
||+|+|.-.-.+..++++-. .+++ +.|. | +....+++.+.+|. -++.|.+.|+++|++
T Consensus 1 lviG~ggrehal~~~l~~s~~~~~~~-----------~~pg----n-~g~~~~~~~~~vp~----~~~~d~~~l~~~a~~ 60 (434)
T PLN02257 1 LVIGGGGREHALCYALQRSPSCDAVF-----------CAPG----N-AGIATSGDATCVPD----LDISDSAAVISFCRK 60 (434)
T ss_pred CEEcccHHHHHHHHHHHhCCCCCEEE-----------ECCC----C-HHHhhhccceeecC----CCCCCHHHHHHHHHH
Confidence 68898887777777777654 2222 3332 3 45555666666643 245778999999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcc
Q 000086 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2304)
Q Consensus 130 ~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~ 209 (2304)
+++|.|++|+..... +.+.+.|++.|++++||+.++++.++||..+|++++++|||||+|..
T Consensus 61 ~~id~vvvg~E~~lv-~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~----------------- 122 (434)
T PLN02257 61 WGVGLVVVGPEAPLV-AGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYET----------------- 122 (434)
T ss_pred cCCCEEEECCchHHH-HHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEE-----------------
Confidence 999999999543222 24667888899999999999999999999999999999999999876
Q ss_pred cccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccceeeE
Q 000086 210 VYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRHLEV 285 (2304)
Q Consensus 210 ~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~reieV 285 (2304)
+.+.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+... ..+.+++||+|++| +|++|
T Consensus 123 ------~~~~~e~~~~~~~~g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G-~E~Sv 195 (434)
T PLN02257 123 ------FTDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDG-EEASF 195 (434)
T ss_pred ------eCCHHHHHHHHHHcCCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-CEEEE
Confidence 67889999999999999999999999999999999999999999887432 12468999999987 69999
Q ss_pred EEEEcCCCCEEEeeccccccccccceEEE------------eCCCCCCCHHHHHHH-HHHHHHH---HHH--CCceeeeE
Q 000086 286 QLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKL-EQAARRL---AKC--VNYVGAAT 347 (2304)
Q Consensus 286 qvl~D~~G~vi~l~~RdcSvqrr~qKiie------------eaPa~~l~~e~~~~m-~e~A~rl---aka--lGy~Ga~t 347 (2304)
+++.|+. +++.+. ..| .|+++.+ .+|++.+++++.+++ ++.+.++ .++ +.|+|..+
T Consensus 196 ~~~~dG~-~~~pl~----~~~-dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ 269 (434)
T PLN02257 196 FALVDGE-NAIPLE----SAQ-DHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLY 269 (434)
T ss_pred EEEECCC-cEEEEE----eee-ecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999854 455442 233 2444433 457777888888875 4444444 334 45789999
Q ss_pred EEEEEEccCCcEEEEEeccCCCC-CcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccC
Q 000086 348 VEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATP 426 (2304)
Q Consensus 348 VEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~ 426 (2304)
+||+++.++|++||||+|+|+|. |+.++...++.||++++++++.|.... + .+.
T Consensus 270 ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g~l~~-~------------------------~~~ 324 (434)
T PLN02257 270 AGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGELSG-V------------------------SLT 324 (434)
T ss_pred EEEEEEcCCCCEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcCCCCC-C------------------------Cce
Confidence 99999843677999999999995 466676679999999999999996321 1 122
Q ss_pred CCccccCCCCCceEEEEEEEccCCCCCCCCCCCC-ccccccccC--CCcEEEEE-eee--eCCcccccCCCccEEEEEEe
Q 000086 427 FDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSG-KVQELSFKS--KPNVWAYF-SVK--SGGGIHEFSDSQFGHVFAFG 500 (2304)
Q Consensus 427 f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G-~i~~l~~~s--~~~V~~~~-~v~--~G~~i~~~~Ds~~g~via~G 500 (2304)
|+ .+.++.+.+.+.... ..|..| .|..+.-.. .+++.++. ++. .++.+. ...+++..|++.|
T Consensus 325 ~~---------~~~av~vv~a~~gYp--~~~~~g~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-t~ggRvl~v~~~g 392 (434)
T PLN02257 325 WS---------PDSAMVVVMASNGYP--GSYKKGTVIKNLDEAEAVAPGVKVFHAGTALDSDGNVV-AAGGRVLGVTAKG 392 (434)
T ss_pred EC---------CCceEEEEEcCCCCC--CCCCCCCEeeCCccccccCCCCEEEECCceEccCCEEE-ECCCeEEEEEEec
Confidence 32 122333333332210 112223 222222111 14443332 222 123222 3456799999999
Q ss_pred CCHHHHHHHHHHhhcceEEec
Q 000086 501 ESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 501 ~~reeA~~~l~~AL~el~I~G 521 (2304)
+|.++|+++++++++.+++.|
T Consensus 393 ~~~~~A~~~ay~~~~~i~~~~ 413 (434)
T PLN02257 393 KDIAEARARAYDAVDQIDWPG 413 (434)
T ss_pred CCHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999998
No 45
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.5e-31 Score=338.80 Aligned_cols=384 Identities=14% Similarity=0.165 Sum_probs=271.8
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|++||||+|+|.-...++.++++.|++++ +++.. .|......++.++.+ +..|.+.|+++
T Consensus 1 ~~~kVLvlG~G~re~al~~~l~~~g~~v~-----------~~~~~--~Npg~~~~a~~~~~~-------~~~d~e~l~~~ 60 (435)
T PRK06395 1 MTMKVMLVGSGGREDAIARAIKRSGAILF-----------SVIGH--ENPSIKKLSKKYLFY-------DEKDYDLIEDF 60 (435)
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCeEE-----------EEECC--CChhhhhcccceeec-------CCCCHHHHHHH
Confidence 57899999999999999999999997765 33222 344445567765543 34678999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|++|.+.... ..+...+++.|++++||+.++++.++||..+|++++++|||+|++..
T Consensus 61 ~~~~~id~Vi~~~d~~l~-~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~-------------- 125 (435)
T PRK06395 61 ALKNNVDIVFVGPDPVLA-TPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFN-------------- 125 (435)
T ss_pred HHHhCCCEEEECCChHHH-HHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccc--------------
Confidence 999999999999653221 13446667789999999999999999999999999999999987542
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCH-HHHHHHHHHHHhh-CCCCcEEEEEeccccceee
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND-DEVRALFKQVQGE-VPGSPIFIMKVASQSRHLE 284 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~-eEL~~a~~~~~~e-~~~~~i~VEeyI~g~reie 284 (2304)
.+.+.+++..++.+++|||||||..++||+||++|.+. +++.+++..+... ..+.+++||||++| .|++
T Consensus 126 --------~~~~~~e~~~~~~~~~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G-~E~S 196 (435)
T PRK06395 126 --------ACFSEKDAARDYITSMKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTG-EEFS 196 (435)
T ss_pred --------eeCChHHHHHHHHhhCCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCC-ceEE
Confidence 04566788888888899999999999999999999542 2334444433332 33568999999987 6999
Q ss_pred EEEEEcCCCCEEEeeccccccccccceEEEe--C--------------CCCCCCHHHHHHHHHHHHHHHHHCC-----ce
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIEE--G--------------PITVAPLETVKKLEQAARRLAKCVN-----YV 343 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~qKiiee--a--------------Pa~~l~~e~~~~m~e~A~rlakalG-----y~ 343 (2304)
|+++.|+. .+..+. +-+.|.+..+. + |.+.++++..+++.+.+.+++++|+ |+
T Consensus 197 vd~~~dg~-~~~~l~-----~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~ 270 (435)
T PRK06395 197 LQAFSDGK-HLSFMP-----IVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFK 270 (435)
T ss_pred EEEEEcCC-eEEEec-----ccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 99999864 333321 22233333221 1 3445889999999999999999999 78
Q ss_pred eeeEEEEEEEccCCcEEEEEeccCCCCC-cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000086 344 GAATVEYLYSMETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2304)
Q Consensus 344 Ga~tVEfl~d~~~g~~yfLEINpRlqge-hpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2304)
|+.++|++++ ++++|+||+|+|++.- ....-...+.|+..+.+.++.| +|..
T Consensus 271 G~l~~~~~lt--~~gp~ViE~n~R~gdpe~~~il~~l~~d~~~~~~~~~~g-~l~~------------------------ 323 (435)
T PRK06395 271 GIMYGQFMDT--PNGVKVIEINARFADPEGINVLYLLKSDFVETLHQIYSG-NLNG------------------------ 323 (435)
T ss_pred EEEEEEEEEe--CCCcEEEEEeCCCCCccHHhhhhhcccCHHHHHHHHhcC-CCCC------------------------
Confidence 9999999998 6779999999999853 3222234579999999999999 5531
Q ss_pred cccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEE-EEeeee-CCcccccCCCccEEEEEEe
Q 000086 423 IATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWA-YFSVKS-GGGIHEFSDSQFGHVFAFG 500 (2304)
Q Consensus 423 ~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~-~~~v~~-G~~i~~~~Ds~~g~via~G 500 (2304)
.+.|. .....+..+...-|+++ |..|.|........+++.+ +.++.. .+. .....+++++|++.|
T Consensus 324 -~~~~~-----~~~~~~~~l~~~gYp~~------~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~-~~s~ggRv~~vv~~g 390 (435)
T PRK06395 324 -SIKFE-----RKATVLKYIVPPGYGEN------PSPGRIKIDKTIFDSNSDVYYASVSGTLND-VKTSGSRSLAIIAKG 390 (435)
T ss_pred -Cceec-----CCCEEEEEEecCCCCCC------CCCCceeccccccCCCCEEEEeeccccCCC-eEECCCcEEEEEEEc
Confidence 12221 11112233333333332 4446554221111244444 333331 112 223456799999999
Q ss_pred CCHHHHHHHHHHhhcceEEec
Q 000086 501 ESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 501 ~~reeA~~~l~~AL~el~I~G 521 (2304)
+|.++|+++++++++.++ .|
T Consensus 391 ~~~~eA~~~a~~~~~~I~-~~ 410 (435)
T PRK06395 391 DSIPEASEKVDSDLNAVH-GS 410 (435)
T ss_pred CCHHHHHHHHHHHHhccC-CC
Confidence 999999999999999998 55
No 46
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=1.8e-31 Score=368.66 Aligned_cols=325 Identities=20% Similarity=0.312 Sum_probs=264.0
Q ss_pred CccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000086 47 PIHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2304)
Q Consensus 47 ~~~kILIan~G~-----------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~ 115 (2304)
..+||||+|.|. .++.+++++|++||+++ .+..++...+.....||+.+..|
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI-----------~vn~npetvs~~~~~aD~~y~ep------ 616 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETI-----------MINNNPETVSTDYDTADRLYFEP------ 616 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEE-----------EEeCCccccccccccCceEEEcc------
Confidence 458999999986 46789999999999986 33234444455666799987754
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCc
Q 000086 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2304)
Q Consensus 116 sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~ 195 (2304)
.+.+.|+++++++++|+|+|++|.... ..++..|++.|+.++|++++++..+.||..++++++++|||+|+|..
T Consensus 617 --~~~e~vl~I~~~e~~dgVI~~~g~~~~-~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~--- 690 (1068)
T PRK12815 617 --LTLEDVLNVAEAENIKGVIVQFGGQTA-INLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLT--- 690 (1068)
T ss_pred --CCHHHHHHHHhhcCCCEEEEecCcHHH-HHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEE---
Confidence 247999999999999999998875532 34678888999999999999999999999999999999999999876
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000086 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2304)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEe 275 (2304)
+.+.+|+.++++++||||||||+.++||+|+++|+|.+||..+++.+ .....+++||+
T Consensus 691 --------------------~~s~ee~~~~~~~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~--~s~~~~vlIee 748 (1068)
T PRK12815 691 --------------------ATDEEEAFAFAKRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAEN--ASQLYPILIDQ 748 (1068)
T ss_pred --------------------eCCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHh--hcCCCCEEEEE
Confidence 78999999999999999999999999999999999999999999987 34567899999
Q ss_pred eccccceeeEEEEEcCCCCEEEeeccccccccc--cce-EEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEE
Q 000086 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--HQK-IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2304)
Q Consensus 276 yI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr--~qK-iieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~ 352 (2304)
|++| .|++|++++|+....+ ....+ .+.+. |.. .....|+..++++..++|.+.+.++++++|+.|++++||++
T Consensus 749 fI~G-~E~~Vd~i~dg~~v~i-~~i~e-~~e~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v 825 (1068)
T PRK12815 749 FIDG-KEYEVDAISDGEDVTI-PGIIE-HIEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVL 825 (1068)
T ss_pred eecC-ceEEEEEEEcCCceEE-eeEEE-EeeccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEE
Confidence 9976 7999999999743322 21111 00111 110 11123555688899999999999999999999999999999
Q ss_pred EccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCch-------------------hhhhcccccCCCc
Q 000086 353 SMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP-------------------EIRRFYGMEHGGV 413 (2304)
Q Consensus 353 d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ip-------------------dir~~yg~~~~~~ 413 (2304)
+ ++++|+||+|||+++..|+...++|+|++++.+++++|.++..+. .+.+|.|.|+. +
T Consensus 826 ~--~~~~yviEiNpR~s~t~~~~skatGv~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~~~vk~p~f~f~~~~~~~~~-l 902 (1068)
T PRK12815 826 A--NDEIYVLEVNPRASRTVPFVSKATGVPLAKLATKVLLGKSLAELGYPNGLWPGSPFIHVKMPVFSYLKYPGVDNT-L 902 (1068)
T ss_pred E--CCcEEEEEEeCCCCccHHHHHHHHCCCHHHHHHHHHcCCChhhcccccccCCCCCeEEEEeccCChhHcccCCCc-c
Confidence 8 688999999999999999989999999999999999999876431 23455566654 4
Q ss_pred ccccccccc
Q 000086 414 YDAWRKTSV 422 (2304)
Q Consensus 414 ~~~~~~~~~ 422 (2304)
+++||+||+
T Consensus 903 g~~m~stGe 911 (1068)
T PRK12815 903 GPEMKSTGE 911 (1068)
T ss_pred CCcceEcce
Confidence 677777775
No 47
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=9.9e-31 Score=357.26 Aligned_cols=376 Identities=14% Similarity=0.170 Sum_probs=285.1
Q ss_pred ccEEEEECch--HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh-hccEEEEccCCCCCCCccCHHHHH
Q 000086 48 IHSILIANNG--MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR-IADQFVEVPGGTNNNNYANVQLIV 124 (2304)
Q Consensus 48 ~~kILIan~G--~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir-~ADe~v~vp~~~~~~sY~dvd~Ii 124 (2304)
.++|++++.+ ..+..++++++++||+++ + ++ ++.. ..++.+ .+|+.+.. ++.|.+.++
T Consensus 2 ~~~~~~ie~~~~~~g~~l~~aa~~lG~~vi---------~-v~-~~~~-~~~~~~~~~~~~~~~-------d~~d~~~l~ 62 (887)
T PRK02186 2 TGIFVFIESNTTGTGELLLRKALLRGFTPY---------F-LT-ANRG-KYPFLDAIRVVTISA-------DTSDPDRIH 62 (887)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHHcCCEEE---------E-Ee-CCch-hhchhhhcceeEEEc-------CCCCHHHHH
Confidence 3678888754 355778999999999985 1 22 1221 113333 46766665 456789999
Q ss_pred HHHHHc-CCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcc
Q 000086 125 EMAEMT-RVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2304)
Q Consensus 125 ~iA~~~-~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~ 203 (2304)
+++++. .+++|+++.+...+ ..+..++..| ++||+++++..++||..++++++++|||+|+|..
T Consensus 63 ~~~~~~~~i~~V~~~se~~v~--~aa~lae~lg--lpg~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~----------- 127 (887)
T PRK02186 63 RFVSSLDGVAGIMSSSEYFIE--VASEVARRLG--LPAANTEAIRTCRDKKRLARTLRDHGIDVPRTHA----------- 127 (887)
T ss_pred HHHHhcCCCCEEEeCchhhHH--HHHHHHHHhC--cCCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEE-----------
Confidence 999987 68999988543322 1345555567 5689999999999999999999999999999775
Q ss_pred cccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000086 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~rei 283 (2304)
+.+.+++.++++++|||+||||..|+||+||++|+|.+|+.++++.+... ...+++||+|++| +|+
T Consensus 128 ------------v~~~~e~~~~~~~~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~-~~~~~lvEEfI~G-~E~ 193 (887)
T PRK02186 128 ------------LALRAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRA-GTRAALVQAYVEG-DEY 193 (887)
T ss_pred ------------eCCHHHHHHHHHhCCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhc-CCCcEEEeecccC-CcE
Confidence 67888998888999999999999999999999999999999999887643 3568999999987 799
Q ss_pred eEEEEEcCCCCEE-EeeccccccccccceEEE---eCCCCCCCHHHHHHHHHHHHHHHHHCCce-eeeEEEEEEEccCCc
Q 000086 284 EVQLLCDQYGNVA-ALHSRDCSVQRRHQKIIE---EGPITVAPLETVKKLEQAARRLAKCVNYV-GAATVEYLYSMETGE 358 (2304)
Q Consensus 284 eVqvl~D~~G~vi-~l~~RdcSvqrr~qKiie---eaPa~~l~~e~~~~m~e~A~rlakalGy~-Ga~tVEfl~d~~~g~ 358 (2304)
+|+++.+..+..+ .+..+... .....++ ..|++ ++++..+++.+.+.++++++|+. |++|+||+++ +++
T Consensus 194 sVe~i~~~g~~~i~~i~~k~~~---~~~~~ve~g~~~P~~-l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t--~~g 267 (887)
T PRK02186 194 SVETLTVARGHQVLGITRKHLG---PPPHFVEIGHDFPAP-LSAPQRERIVRTVLRALDAVGYAFGPAHTELRVR--GDT 267 (887)
T ss_pred EEEEEEECCcEEEEEEEeeecC---CCCCeEEeccccCCC-CCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEE--CCC
Confidence 9999987543322 22221111 1122333 24665 77889999999999999999995 9999999998 578
Q ss_pred EEEEEeccCCCCCc--ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCC
Q 000086 359 YYFLELNPRLQVEH--PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTR 436 (2304)
Q Consensus 359 ~yfLEINpRlqgeh--pvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~ 436 (2304)
+||+|+|||++|++ .+++.++|+|+++++++.++|.++... ...
T Consensus 268 ~~liEIn~R~~G~~i~~li~~a~Gvd~~~~~i~~~lG~~~~~~----------------------------------~~~ 313 (887)
T PRK02186 268 VVIIEINPRLAGGMIPVLLEEAFGVDLLDHVIDLHLGVAAFAD----------------------------------PTA 313 (887)
T ss_pred EEEEEECCCCCCccHHHHHHHHHCcCHHHHHHHHhCCCCCCCC----------------------------------CCC
Confidence 99999999999985 468889999999999999999876420 011
Q ss_pred CceEEEEEEEccCCCCCCCCCCCCcccccccc-----CCCcEEEEEeeeeCCcccccCC--CccEEEEEEeCCHHHHHHH
Q 000086 437 PKGHCVAVRVTSEDPDDGFKPTSGKVQELSFK-----SKPNVWAYFSVKSGGGIHEFSD--SQFGHVFAFGESRALAIAN 509 (2304)
Q Consensus 437 ~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~-----s~~~V~~~~~v~~G~~i~~~~D--s~~g~via~G~~reeA~~~ 509 (2304)
...+++.+.+ + |..|+|..+.+. ..+.+.....+++|..++..-| +++|+|+++|+|++++.+.
T Consensus 314 ~~~~ai~~~~-~--------~~~G~i~~i~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~g~vi~~g~~~~e~~~~ 384 (887)
T PRK02186 314 KRYGAIRFVL-P--------ARSGVLRGLLFLPDDIAARPELRFHPLKQPGDALRLEGDFRDRIAAVVCAGDHRDSVAAA 384 (887)
T ss_pred CCeEEEEEEe-c--------CCCceEEecccchhhcccCCeEEEEEecCCCCEecCCCCCCCccEEEEEEcCCHHHHHHH
Confidence 1233343333 2 235877776542 2345555566788998876544 5799999999999999999
Q ss_pred HHHhhcceEEe
Q 000086 510 MVLGLKEIQIR 520 (2304)
Q Consensus 510 l~~AL~el~I~ 520 (2304)
+.++.+.++|+
T Consensus 385 ~~~~~~~l~~~ 395 (887)
T PRK02186 385 AERAVAGLSID 395 (887)
T ss_pred HHHHHhcCEEE
Confidence 99999999885
No 48
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.7e-30 Score=328.65 Aligned_cols=381 Identities=16% Similarity=0.136 Sum_probs=271.6
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
..||||+|+|.-...++.++++.++.+. +.+.|.+ ......+- ...+ .-++.|.+.|+++|
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~~~---------~~~~pgn----~g~~~~~~-~~~~-----~~~~~d~~~l~~~a 64 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLLSE---------LKVFPGN----GGFPDDEL-LPAD-----SFSILDKSSVQSFL 64 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCE---------EEEECCc----hHHhcccc-cccc-----CcCcCCHHHHHHHH
Confidence 4699999999999999999999885542 2234332 21111110 0111 12568999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCc---hHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccc
Q 000086 128 EMTRVDAVWPGWGHASEIPE---LPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~---la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~ 204 (2304)
+++++|.|++|. |++. +++.|++.|++++||+..++++++||..+|++++++|||+|+|..
T Consensus 65 ~~~~iD~Vv~g~----E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~------------ 128 (426)
T PRK13789 65 KSNPFDLIVVGP----EDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKT------------ 128 (426)
T ss_pred HHcCCCEEEECC----chHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEe------------
Confidence 999999999984 4433 557788899999999999999999999999999999999999865
Q ss_pred ccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccc
Q 000086 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQS 280 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~ 280 (2304)
+++.+++.++++++|||+||||..++||+||++|++.+|+.++++.+.... .+..++||+|++|
T Consensus 129 -----------~~~~~ea~~~~~~~~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G- 196 (426)
T PRK13789 129 -----------FTEYSSSLSYLESEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG- 196 (426)
T ss_pred -----------eCCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC-
Confidence 678999999999999999999999999999999999999999999876432 2357999999987
Q ss_pred ceeeEEEEEcCCCCEEEeeccccccccccceE------------EEeCCCCCCCHHHHHHHHH-HHHHHH---HHCC--c
Q 000086 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI------------IEEGPITVAPLETVKKLEQ-AARRLA---KCVN--Y 342 (2304)
Q Consensus 281 reieVqvl~D~~G~vi~l~~RdcSvqrr~qKi------------ieeaPa~~l~~e~~~~m~e-~A~rla---kalG--y 342 (2304)
+|++|.++.|+. +++.+.. . +.|++. ...+|++.+++++.+++.+ .+.+++ ++.| |
T Consensus 197 ~E~Sv~~~~dg~-~~~~lp~----~-~d~k~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~ 270 (426)
T PRK13789 197 QEASIFAISDGD-SYFLLPA----A-QDHKRAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPY 270 (426)
T ss_pred eEEEEEEEECCC-EEEEccc----e-EecccccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 899999999863 3333311 1 123332 2346877778888888764 444555 4445 8
Q ss_pred eeeeEEEEEEEccCCcEEEEEeccCCCCC--cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccc
Q 000086 343 VGAATVEYLYSMETGEYYFLELNPRLQVE--HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420 (2304)
Q Consensus 343 ~Ga~tVEfl~d~~~g~~yfLEINpRlqge--hpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~ 420 (2304)
+|+.++||++++ +|++||+|+|||++.. ..+.. ..+.||.+++++++.|.....
T Consensus 271 ~Gvl~~e~~it~-~g~~~vlE~n~R~Gdpe~~~ll~-~l~~dl~~~~~~~~~g~l~~~---------------------- 326 (426)
T PRK13789 271 RGLLYAGLMISP-EGEPKVVEFNCRFGDPETQCVLA-MLDGDLLELLYAASTGKIKVV---------------------- 326 (426)
T ss_pred eEEEEEEEEEcC-CCCEEEEEEecCCCCcHhhhhhc-cCCCCHHHHHHHHHcCCCCCC----------------------
Confidence 999999999983 5669999999999631 12222 245899999999999953210
Q ss_pred cccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCc-cccccccCCCcEEEEE-eee-eCCcccccCCCccEEEE
Q 000086 421 SVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGK-VQELSFKSKPNVWAYF-SVK-SGGGIHEFSDSQFGHVF 497 (2304)
Q Consensus 421 ~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~-i~~l~~~s~~~V~~~~-~v~-~G~~i~~~~Ds~~g~vi 497 (2304)
.+.|. .+.++.+.+.++... ..+..|. |. +.-...+++.++. ++. .++. ...+.+++..|+
T Consensus 327 ---~~~~~---------~~~s~~vv~a~~gyp--~~~~~g~~i~-~~~~~~~~~~if~a~~~~~~~~-~~t~ggRvl~v~ 390 (426)
T PRK13789 327 ---NLKLK---------QGAAAVVVLAAQGYP--DSYEKNIPLN-LPETSGQNVVLFHAGTKKKDGK-VFSSGGRILGIV 390 (426)
T ss_pred ---Cceec---------CCceEEEEECcCCcC--CCcCCCCEEe-ccCcCCCCcEEEEeeeeeeCCE-EEeCCCeEEEEE
Confidence 12221 133444444443211 1223343 32 3211114554442 333 2232 224556788899
Q ss_pred EEeCCHHHHHHHHHHhhcceEEec
Q 000086 498 AFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 498 a~G~~reeA~~~l~~AL~el~I~G 521 (2304)
+.|+|.++|+++++++++.+++.|
T Consensus 391 ~~g~~~~~A~~~ay~~~~~i~~~~ 414 (426)
T PRK13789 391 AQGKDLKDSVDQAYSFLEKIQAPK 414 (426)
T ss_pred EecCCHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999998
No 49
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=8.8e-31 Score=363.10 Aligned_cols=305 Identities=20% Similarity=0.339 Sum_probs=252.2
Q ss_pred CccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000086 47 PIHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2304)
Q Consensus 47 ~~~kILIan~G~-----------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~ 115 (2304)
..+||||+|+|. .++++++++|++||+++ .+..++...+....+||+.+..|
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi-----------~v~~npetvs~~~~~aD~~y~e~------ 615 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETI-----------MVNCNPETVSTDYDTSDRLYFEP------ 615 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEE-----------EEeCCccccccccchhhheeecC------
Confidence 468999999987 46889999999999986 33222222334456789877643
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCc
Q 000086 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2304)
Q Consensus 116 sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~ 195 (2304)
.+.+.++++++++++|+|++.+|.... ..++..|++.|+.++|++++++..+.||..++++++++|||+|+|..
T Consensus 616 --~~~e~v~~i~~~e~~dgVi~~~g~~~~-~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~--- 689 (1066)
T PRK05294 616 --LTLEDVLEIIEKEKPKGVIVQFGGQTP-LKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGT--- 689 (1066)
T ss_pred --CCHHHHHHHHHHcCCCEEEEEeCchhH-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEE---
Confidence 247999999999999999987664443 24778899999999999999999999999999999999999999876
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000086 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2304)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEe 275 (2304)
+.+.+++.++++++||||||||+.|+||+|+.+|+|.+||..+++.+....++.+++||+
T Consensus 690 --------------------~~s~ee~~~~~~~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEe 749 (1066)
T PRK05294 690 --------------------ATSVEEALEVAEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDK 749 (1066)
T ss_pred --------------------ECCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 778999999999999999999999999999999999999999999887666677999999
Q ss_pred eccccceeeEEEEEcCCCCEEEeeccccccccc--cc-eEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEE
Q 000086 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--HQ-KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2304)
Q Consensus 276 yI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr--~q-KiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~ 352 (2304)
|++|.+|++|++++|+. +++.....+ .+.+. |. ......|+..++++..++|.+.+.++++++|+.|+++|||++
T Consensus 750 fI~G~~E~sV~~v~dg~-~v~i~~i~e-~i~~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~ 827 (1066)
T PRK05294 750 FLEGAIEVDVDAICDGE-DVLIGGIME-HIEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAV 827 (1066)
T ss_pred cCCCCEEEEEEEEecCC-eEEEeeeEE-eeeeccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEE
Confidence 99987799999999865 332211100 00000 11 011223555688899999999999999999999999999999
Q ss_pred EccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000086 353 SMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2304)
Q Consensus 353 d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ 398 (2304)
+ ++++|++|+|||+++..|+++.++|+|++++.+++++|.+++.
T Consensus 828 ~--~~~~yViEiNpR~s~t~~~~s~atGi~~~~~~~~~~lG~~l~~ 871 (1066)
T PRK05294 828 K--DDEVYVIEVNPRASRTVPFVSKATGVPLAKIAARVMLGKKLAE 871 (1066)
T ss_pred E--CCeEEEEEEecCCCccHHHHHHHhCccHHHHHHHHHcCCChhh
Confidence 8 7899999999999999999999999999999999999998864
No 50
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.98 E-value=1.7e-30 Score=324.98 Aligned_cols=333 Identities=17% Similarity=0.209 Sum_probs=244.0
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCc
Q 000086 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2304)
Q Consensus 116 sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~ 195 (2304)
++.|.+.|+++|+++++|+|++|.+.... ..+.+.|++.|+.++||++++++.++||..+|++++++|||+|+|..
T Consensus 12 ~~~d~~~l~~~~~~~~id~vi~g~E~~l~-~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~--- 87 (379)
T PRK13790 12 SESDHQAILDFAKQQNVDWVVIGPEQPLI-DGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKE--- 87 (379)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCcHHHH-HHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEE---
Confidence 56788999999999999999998654222 23557888899999999999999999999999999999999999865
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000086 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2304)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEe 275 (2304)
+.+.+++.++++++|||+||||..|+||+||++|+|.+|+.++++.+.......+++||+
T Consensus 88 --------------------~~~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe 147 (379)
T PRK13790 88 --------------------VERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFET 147 (379)
T ss_pred --------------------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 678889999999999999999999999999999999999999999876433345899999
Q ss_pred eccccceeeEEEEEcCCCCEEEeeccccccccccceEE------------EeCCCCCCCHHHHHHH-HHHHHHHHHHC--
Q 000086 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKII------------EEGPITVAPLETVKKL-EQAARRLAKCV-- 340 (2304)
Q Consensus 276 yI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKii------------eeaPa~~l~~e~~~~m-~e~A~rlakal-- 340 (2304)
|++| +|++|.++.|+.+ .+.+ +|..|. |.+.. ...|++.++++..+++ ++.+.++++++
T Consensus 148 ~i~G-~E~sv~~~~~g~~-~~~~---~~~~~~-~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~ 221 (379)
T PRK13790 148 FLEG-EEFSLMTFVNGDL-AVPF---DCIAQD-HKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLN 221 (379)
T ss_pred cccC-ceEEEEEEeeCCE-EEec---cccccc-ccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 8999999998542 2221 233332 21111 2246656777766655 66667666666
Q ss_pred -C--ceeeeEEEEEEEccCCcEEEEEeccCCCCC-cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccc
Q 000086 341 -N--YVGAATVEYLYSMETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDA 416 (2304)
Q Consensus 341 -G--y~Ga~tVEfl~d~~~g~~yfLEINpRlqge-hpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~ 416 (2304)
| |.|+.++||+++ ++++|++|+|+|+++- ..+....+|+|+.+.+++++.|.+++.
T Consensus 222 ~g~~~~Gvl~~e~~lt--~~g~~viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~~~~~------------------ 281 (379)
T PRK13790 222 EGYQFFGVLYIGAILT--KDGPKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEF------------------ 281 (379)
T ss_pred cCCCceeEEEEEEEEe--CCCeEEEEEEcccCCCcceeeecccCCCHHHHHHHHHcCCCCce------------------
Confidence 5 479999999998 4569999999999763 234444589999999999999976531
Q ss_pred cccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeee-eCCcccccCCCccEE
Q 000086 417 WRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVK-SGGGIHEFSDSQFGH 495 (2304)
Q Consensus 417 ~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~-~G~~i~~~~Ds~~g~ 495 (2304)
.| .+....|-+++++.|+++|..+ +.|..+.. .+...+.++. .++.+. ...++++.
T Consensus 282 ---------~~-----~~~~~~~v~~~s~gyp~~~~~~-----~~i~~~~~---~~~~~~~~~~~~~~~~~-~~ggRv~~ 338 (379)
T PRK13790 282 ---------KW-----KNESIVGVMLASKGYPDAYEKG-----HKVSGFDL---NENYFVSGLKKQGDTFV-TSGGRVIL 338 (379)
T ss_pred ---------eE-----cCCCEEEEEEccCCCCCCCCCC-----CeeeecCC---CCeEEECCccccCCeEE-ECCCeEEE
Confidence 11 1122334555555555444332 12222211 1111122222 112111 22367899
Q ss_pred EEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 496 VFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 496 via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
|++.|+|.+||+++++++++.+++.|
T Consensus 339 v~~~g~~~~~a~~~~~~~~~~i~~~~ 364 (379)
T PRK13790 339 AIGKGDNVQDAQRDAYEKVSQIQSDH 364 (379)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999998
No 51
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=318.49 Aligned_cols=293 Identities=20% Similarity=0.300 Sum_probs=238.0
Q ss_pred ccEEEEECchHHHHHHHHHHHHcC--CcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWA--YETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~G--y~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
|.||||+|.|... .++++++++| |+++ ++ |.+..++..++||+++.+|... +..| ++.+++
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi-----------~~--d~~~~~~~~~~~d~~~~~p~~~-~~~~--~~~l~~ 63 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVI-----------GA--DISELAPALYFADKFYVVPKVT-DPNY--IDRLLD 63 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEE-----------EE--CCCCcchhhHhccCcEecCCCC-ChhH--HHHHHH
Confidence 5799999988666 8899999995 7764 44 5557788888999999887542 3345 789999
Q ss_pred HHHHcCCCEEEeCCCcCCC-CCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccc
Q 000086 126 MAEMTRVDAVWPGWGHASE-IPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SE-n~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~ 204 (2304)
+++++++|+|+|+++.... -....+.+++.|+.+++|+++++..+.||..++++++++|||+|+|..
T Consensus 64 ~~~~~~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~------------ 131 (326)
T PRK12767 64 ICKKEKIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYL------------ 131 (326)
T ss_pred HHHHhCCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEc------------
Confidence 9999999999998653221 112345677789999999999999999999999999999999999765
Q ss_pred ccCcccccccccCCHHHHHH--HhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccce
Q 000086 205 TIPDDVYRQACVYTTEEAIA--SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~--~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~re 282 (2304)
+.+.+++.+ ..++++||+|+||..|+||+|+++|+|.+|+.+++++. .+++||+|++| ++
T Consensus 132 -----------~~~~~~~~~~~~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~~------~~~lvqeyi~G-~e 193 (326)
T PRK12767 132 -----------PESLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYV------PNLIIQEFIEG-QE 193 (326)
T ss_pred -----------ccCHHHHHhhhhcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHhC------CCeEEEeccCC-ce
Confidence 677888877 56789999999999999999999999999999988764 38999999966 89
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
+++.++.+.+|+++.+..+.....+... .. +.... ..+++.+.+.++++++||.|.+++||+++ +|++||+
T Consensus 194 ~~v~~~~~~~G~~~~~~~~~~~~~~~g~-~~---~~~~~---~~~~i~~~~~~i~~~lg~~G~~~vd~~~~--~g~~~vi 264 (326)
T PRK12767 194 YTVDVLCDLNGEVISIVPRKRIEVRAGE-TS---KGVTV---KDPELFKLAERLAEALGARGPLNIQCFVT--DGEPYLF 264 (326)
T ss_pred EEEEEEEcCCCCEEEEEEeeeeeecCCc-ee---EEEEc---CCHHHHHHHHHHHHhcCCeeeEEEEEEEE--CCeEEEE
Confidence 9999999877898877655431111110 00 00001 12678899999999999999999999999 5899999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~ 397 (2304)
|+|||+++.++++ ..+|+|++++.++.++|.+++
T Consensus 265 EiNpR~~g~~~~~-~~~G~n~~~~~~~~~~g~~~~ 298 (326)
T PRK12767 265 EINPRFGGGYPLS-YMAGANEPDWIIRNLLGGENE 298 (326)
T ss_pred EEeCCCCCcchhh-HhhCCCHHHHHHHHHcCCCCC
Confidence 9999999998865 479999999999999999875
No 52
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.97 E-value=1.6e-28 Score=313.63 Aligned_cols=379 Identities=15% Similarity=0.167 Sum_probs=258.7
Q ss_pred EEEEECchHHHHHHHHHHHHc--CCcccccccceeEEEEEeccCCCCCChhhhhc----cEEEEccCCCCCCCccCHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTW--AYETFGTEKAILLVAMATPEDMRINAEHIRIA----DQFVEVPGGTNNNNYANVQLI 123 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~--Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~A----De~v~vp~~~~~~sY~dvd~I 123 (2304)
||||+|+|.-...++.++++. |++++ +++.. .|....+.+ |+++.+ +..|.+.|
T Consensus 2 kVLviG~Ggrehal~~~l~~s~~g~~v~-----------~~~g~--~Npg~~~~~~~~~~~~~~~-------~~~d~~~l 61 (486)
T PRK05784 2 KVLLVGDGAREHALAEALEKSTKGYKVY-----------ALSSY--LNPGINSVVKATGGEYFIG-------NINSPEEV 61 (486)
T ss_pred EEEEECCchhHHHHHHHHHhCCCCCEEE-----------EEECC--CChhheeecccccCceEec-------CCCCHHHH
Confidence 899999999999999999998 78775 44332 233433322 444554 34678999
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCC---chHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCC-CCCCCccCCC
Q 000086 124 VEMAEMTRVDAVWPGWGHASEIP---ELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP-WSGSHVKIPP 199 (2304)
Q Consensus 124 i~iA~~~~vDaV~pG~G~~SEn~---~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp-~s~~~~~~~~ 199 (2304)
+++|+++++|+|++|. |.+ .+++.|++.|++++||++++++.++||..+|++++++|||+|+ |..
T Consensus 62 ~~~a~~~~id~Vi~g~----E~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~------- 130 (486)
T PRK05784 62 KKVAKEVNPDLVVIGP----EEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKV------- 130 (486)
T ss_pred HHHHHHhCCCEEEECC----chHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceE-------
Confidence 9999999999999983 444 3457888999999999999999999999999999999999985 443
Q ss_pred CCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHH-----HHHHH----HHHHhh-----
Q 000086 200 ESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDE-----VRALF----KQVQGE----- 265 (2304)
Q Consensus 200 ~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eE-----L~~a~----~~~~~e----- 265 (2304)
+++.+++.++++.. +||||||..++||+||++|++.++ +.+++ +.+...
T Consensus 131 ----------------~~~~~ea~~~~~~~-~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g 193 (486)
T PRK05784 131 ----------------FYDVEEAAKFIEYG-GSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYK 193 (486)
T ss_pred ----------------eCCHHHHHHHHhhc-CCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhcc
Confidence 67889998888665 699999999999999999999873 33444 333211
Q ss_pred CCCCcEEEEEeccccceeeEEEEEcCCCCEEEe-eccccccccccceEEE------------eCC----CCCCCHHHHHH
Q 000086 266 VPGSPIFIMKVASQSRHLEVQLLCDQYGNVAAL-HSRDCSVQRRHQKIIE------------EGP----ITVAPLETVKK 328 (2304)
Q Consensus 266 ~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l-~~RdcSvqrr~qKiie------------eaP----a~~l~~e~~~~ 328 (2304)
..+.+++||||++| .|++|++++|+. +++.+ ..+ .|..+.+ .+| .+.++++..++
T Consensus 194 ~~~~~VlIEEfL~G-~E~SV~al~dG~-~~~~l~~~q------d~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~ 265 (486)
T PRK05784 194 DVEPKILVEEKVDG-VEYTLQVLTDGE-TVIPLPLAQ------DYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEE 265 (486)
T ss_pred CCCCeEEEEEccCC-eEEEEEEEECCC-eEEEeeeeE------eecceecCCCCCCCCCCcccCCccccCCCCCHHHHHH
Confidence 12568999999987 799999999864 33322 222 2333332 135 55566777666
Q ss_pred HHHHHHHHHHHC----C--ceeeeEEEEEEEccCCcEEEEEeccCCCCCc--ceehhhhcCCHHHHHHHHHcCCCCCCch
Q 000086 329 LEQAARRLAKCV----N--YVGAATVEYLYSMETGEYYFLELNPRLQVEH--PVTEWIAEINLPAAQVAVGMGIPLWQIP 400 (2304)
Q Consensus 329 m~e~A~rlakal----G--y~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh--pvtE~vtGVDL~~~qL~iA~G~pL~~ip 400 (2304)
+.+.+...++++ | |+|+.++|++++. ++++++||+|+|++.-. .+... ++.||.++.+.++.|..-.
T Consensus 266 ~~~~v~~~l~al~~~~g~~~~G~l~~elmlt~-~~GP~vIE~n~R~Gdpe~~~llp~-l~~dl~~~~~~~~~g~l~~--- 340 (486)
T PRK05784 266 AVEIVKRTIDAIYKETGERYVGVISGQMMLTE-LWGPTVIEYYSRFGDPEASNIIPR-IESDFGELFELAATGKLSK--- 340 (486)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEEEEEec-CCCcEEEEEecccCCchHHHHHHh-ccCCHHHHHHHHHcCCCCC---
Confidence 666666555444 3 5699999999982 45699999999999632 33333 5669999999999996221
Q ss_pred hhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccc--cCCCcEEEE-E
Q 000086 401 EIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSF--KSKPNVWAY-F 477 (2304)
Q Consensus 401 dir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~--~s~~~V~~~-~ 477 (2304)
..+.|. + ..++.+-+.++.......|..|......- ...+++.++ .
T Consensus 341 ----------------------~~~~~~-----~----~~~~~vv~as~gYp~~~~~~~g~~i~~~~~~~~~~~~~v~~a 389 (486)
T PRK05784 341 ----------------------AKIKFN-----E----EPSVVKAIAPLGYPLSRDLASGRRIVVDLDKIKEEGCLVFFG 389 (486)
T ss_pred ----------------------CCeeec-----C----CceEEEEECCCCCCCcccCCCCCEEECCccccccCCCEEEEC
Confidence 112231 1 12333333333211111234443222110 011232222 2
Q ss_pred eee-eCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcce-EEec
Q 000086 478 SVK-SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI-QIRG 521 (2304)
Q Consensus 478 ~v~-~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el-~I~G 521 (2304)
++. .++.+ -...+++..|++.|+|.++|+++++++++.+ .+.|
T Consensus 390 g~~~~~~~~-~t~ggRvl~v~~~~~~l~~A~~~ay~~~~~i~~~~~ 434 (486)
T PRK05784 390 SVELEGGQL-ITKGSRALEIVAIGKDFEEAYEKLERCISYVSSDTK 434 (486)
T ss_pred CceeeCCEE-EEcCCCeEEEEEEeCCHHHHHHHHHHHHhhccCCCC
Confidence 222 22222 2345668999999999999999999999999 8888
No 53
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.97 E-value=1.4e-28 Score=296.73 Aligned_cols=307 Identities=18% Similarity=0.255 Sum_probs=255.5
Q ss_pred EEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 50 SILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 50 kILIan-~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
+|..+. ...++...++++|+.||+++ .+.+....-..-..+||+.+..|. ..+.+..+++
T Consensus 7 ~Igqa~efdysG~qac~aLkeeg~~vv-----------lvnsnpAti~td~e~AD~~y~eP~--------~~E~v~~Ii~ 67 (400)
T COG0458 7 VIGQAAEFDYSGTQACKALKEEGYGVV-----------LVNSNPATIMTDPELADKVYIEPI--------TKEPVEKIIE 67 (400)
T ss_pred eeEeeeeechhHHHHHHHHHhcCCeEE-----------EEcCCCccccCCchhcceeeeecC--------cHHHHHHHHH
Confidence 344443 34577888999999999986 332333333333468999999984 3688999999
Q ss_pred HcCCCEEEeCCCcCCC-CCchH----HHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcc
Q 000086 129 MTRVDAVWPGWGHASE-IPELP----DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SE-n~~la----~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~ 203 (2304)
++++|+++|+.|.... |..+. -.|++.|+.++|.+.++++.+.||..+++++++.|+|+| +.
T Consensus 68 ~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P--~~----------- 134 (400)
T COG0458 68 KERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP--SR----------- 134 (400)
T ss_pred hcCcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC--cc-----------
Confidence 9999999999875443 21111 123456999999999999999999999999999999999 22
Q ss_pred cccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000086 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~rei 283 (2304)
.+++.+++.+.++.+||||||||+.+.||.|..+++|.+||.+........++-.++++||++.|..|+
T Consensus 135 -----------~~~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~ 203 (400)
T COG0458 135 -----------IAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEF 203 (400)
T ss_pred -----------ccccHHHHhhhHhhcCCCEEEecCcCCCCCceeEEeCHHHHHHHHHhccccCccccceeeeeecCceEE
Confidence 167899999999999999999999999999999999999999999998888887899999999999999
Q ss_pred eEEEEEcCCCCEEEeecccc--ccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEE
Q 000086 284 EVQLLCDQYGNVAALHSRDC--SVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdc--Svqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yf 361 (2304)
+..++.|.+++++......- ..-.+.-..+..+|+..+++...+.++.++.++++.+|..|.++++|.+++.++++||
T Consensus 204 e~ev~rd~~~n~ivvc~men~dp~gvhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~v 283 (400)
T COG0458 204 EYEVVRDGKDNCIVVCNMENLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYV 283 (400)
T ss_pred EEEEEEeCCCCEEEEEeCCccccccccccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEE
Confidence 99999999999988732221 1112223556788999999999999999999999999999999999999987779999
Q ss_pred EEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000086 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2304)
Q Consensus 362 LEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~i 399 (2304)
+|+|||++++..+.+.+||..+.+....+|.|..++.|
T Consensus 284 iEvNpRvSrssaLaskAtgypia~vaakla~g~~l~Ei 321 (400)
T COG0458 284 IEINPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEI 321 (400)
T ss_pred EEecCCcCcchhhhhhccCChHHHHHHHhhcccCchhh
Confidence 99999999999999999998888888889999888764
No 54
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.96 E-value=1.1e-27 Score=274.77 Aligned_cols=373 Identities=18% Similarity=0.236 Sum_probs=294.1
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
+|||.+|.|+.+..+...|.++|.+++ ++ |...+++..+.|++.+.+ +.+|.+.|..+.+
T Consensus 13 ~kvmLLGSGELGKEvaIe~QRLG~eVi-----------AV--DrY~~APAmqVAhrs~Vi-------~MlD~~al~avv~ 72 (394)
T COG0027 13 TKVMLLGSGELGKEVAIEAQRLGVEVI-----------AV--DRYANAPAMQVAHRSYVI-------DMLDGDALRAVVE 72 (394)
T ss_pred eEEEEecCCccchHHHHHHHhcCCEEE-----------Ee--cCcCCChhhhhhhheeee-------eccCHHHHHHHHH
Confidence 689999999999999999999999986 66 888999999999999998 5689999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHH-HHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~la-q~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+.++|.|+|-..- .+.+-...+++.|+.++ |...+.+.+.|+...|+++ +++|+||.+|..
T Consensus 73 rekPd~IVpEiEA--I~td~L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~f--------------- 134 (394)
T COG0027 73 REKPDYIVPEIEA--IATDALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYRF--------------- 134 (394)
T ss_pred hhCCCeeeehhhh--hhHHHHHHHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCccccc---------------
Confidence 9999999987442 33334567888999877 9999999999999999876 679999999887
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC--CCcEEEEEeccccceeeE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP--GSPIFIMKVASQSRHLEV 285 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~--~~~i~VEeyI~g~reieV 285 (2304)
+.|.+|..++++++||||++||..++.|||-.+|.++++++.+|+.++.... +..+++|+|++- ++++
T Consensus 135 --------a~s~~e~~~a~~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~f--d~Ei 204 (394)
T COG0027 135 --------ADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKF--DFEI 204 (394)
T ss_pred --------cccHHHHHHHHHHcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecc--eEEE
Confidence 7899999999999999999999999999999999999999999999886654 358999999976 5555
Q ss_pred EEE--EcCCCCEEEeecccccc----ccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcE
Q 000086 286 QLL--CDQYGNVAALHSRDCSV----QRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359 (2304)
Q Consensus 286 qvl--~D~~G~vi~l~~RdcSv----qrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~ 359 (2304)
.++ +..+|+-. -|.- |-+....-.+-|.. +++...++....|.++.++||-.|.+.||+++. .++.
T Consensus 205 TlLtvr~~~~~~~-----Fc~PIGHrq~dgdY~ESWQP~~-mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~--gDeV 276 (394)
T COG0027 205 TLLTVRAVDGTGS-----FCAPIGHRQEDGDYRESWQPQE-MSEAALEEAQSIAKRVTDALGGRGLFGVELFVK--GDEV 276 (394)
T ss_pred EEEEEEEecCCCC-----cCCCcccccCCCChhcccCccc-cCHHHHHHHHHHHHHHHHhhcCccceeEEEEEe--CCEE
Confidence 544 33333321 1332 22222223345776 889999999999999999999999999999998 7899
Q ss_pred EEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCce
Q 000086 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKG 439 (2304)
Q Consensus 360 yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~g 439 (2304)
||-|+.||+..+.-+|-..-+++-++++++..+|.|++.|+ . || +...
T Consensus 277 ~FsEVSPRPHDTGmVTLiSq~lsEF~LH~RAiLGLPi~~i~---~-~~----------------------------P~AS 324 (394)
T COG0027 277 IFSEVSPRPHDTGMVTLISQDLSEFALHVRAILGLPIPEIR---Q-IS----------------------------PAAS 324 (394)
T ss_pred EEeecCCCCCCCceEEEEeccchHHHHHHHHHhCCCcccee---e-ec----------------------------cccc
Confidence 99999999998887776667999999999999999987532 1 11 1235
Q ss_pred EEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000086 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2304)
Q Consensus 440 hai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2304)
|+|-+-.++.+|. -.|.-..+..|. ..|+.+ |..-.+-.-++|-.++++++-++|++++..+.+.+.|
T Consensus 325 ~vI~~~~~~~~~~-----f~~l~~AL~~p~-t~vRlF------GKP~~~~~RRmGVALA~a~~Ve~Are~A~~aa~~i~v 392 (394)
T COG0027 325 AVILAQETSQAPT-----FDGLAEALGVPD-TQVRLF------GKPEADGGRRLGVALATAESVEEARERARKAASAIEV 392 (394)
T ss_pred ceeeccccccCCc-----hhhHHHHhcCCC-ceEEEe------cCCcccCCceeeEEEecCccHHHHHHHHHHHHhheec
Confidence 6666666555431 123334444432 234433 1111111235899999999999999999999999887
Q ss_pred ec
Q 000086 520 RG 521 (2304)
Q Consensus 520 ~G 521 (2304)
.+
T Consensus 393 ~~ 394 (394)
T COG0027 393 KG 394 (394)
T ss_pred CC
Confidence 53
No 55
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.96 E-value=6.5e-27 Score=279.20 Aligned_cols=296 Identities=20% Similarity=0.293 Sum_probs=253.7
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
+++|.|+|+|..|.++..+++++||+++ +. |.+++++..+.||..+.. .|.|.+.+.+++
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~-----------vL--dp~~~~PA~~va~~~i~~-------~~dD~~al~ela 60 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVI-----------VL--DPDADAPAAQVADRVIVA-------AYDDPEALRELA 60 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEE-----------Ee--cCCCCCchhhcccceeec-------CCCCHHHHHHHH
Confidence 4689999999999999999999999985 33 777899999999999885 567899999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
.+. |+|. |+|..-+.+..+.|.+. ..+ -|++++++...||+..|.+++++|+|+|||..
T Consensus 61 ~~~--DViT--~EfE~V~~~aL~~l~~~-~~v-~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~--------------- 119 (375)
T COG0026 61 AKC--DVIT--YEFENVPAEALEKLAAS-VKV-FPSPDALRIAQDRLVEKQFLDKAGLPVAPFQV--------------- 119 (375)
T ss_pred hhC--CEEE--EeeccCCHHHHHHHHhh-cCc-CCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEE---------------
Confidence 876 8887 55555555566777776 333 49999999999999999999999999999987
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVq 286 (2304)
+.+.+|+..+++++|||+|+|.+.|| -|||.+++.+.+++......... +...++|+|++-.+|++|-
T Consensus 120 --------v~~~~el~~~~~~~g~p~VlKtr~gGYDGkGQ~~i~~~~~~~~~~~~~~~---~~~~vlE~fV~F~~EiSvi 188 (375)
T COG0026 120 --------VDSAEELDAAAADLGFPAVLKTRRGGYDGKGQWRIRSDADLELRAAGLAE---GGVPVLEEFVPFEREISVI 188 (375)
T ss_pred --------eCCHHHHHHHHHHcCCceEEEeccccccCCCeEEeeCcccchhhHhhhhc---cCceeEEeecccceEEEEE
Confidence 88999999999999999999999988 99999999999998875554331 1233999999999999999
Q ss_pred EEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEecc
Q 000086 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2304)
Q Consensus 287 vl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2304)
+..+..|++.++.. -..+++..-.....+|+. +++++.++.+++|.++++.|+|+|+..|||++++ +|++++.|+.|
T Consensus 189 ~aR~~~G~~~~yP~-~eN~h~~gIl~~siaPa~-i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~-dg~llvNEiAP 265 (375)
T COG0026 189 VARSNDGEVAFYPV-AENVHRNGILRTSIAPAR-IPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTP-DGELLVNEIAP 265 (375)
T ss_pred EEEcCCCCEEEecc-cceeeecCEEEEEEecCc-CCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEEC-CCcEEEeeccC
Confidence 99998898887533 335565554445678985 8888999999999999999999999999999994 67999999999
Q ss_pred CCCCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000086 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2304)
Q Consensus 367 RlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ 398 (2304)
|+..+...|...+.++.++.+|+..+|.||+.
T Consensus 266 RvHNSGH~T~~gc~~SQFEqHlRAv~glPLg~ 297 (375)
T COG0026 266 RVHNSGHWTIDGCETSQFEQHLRAVLGLPLGS 297 (375)
T ss_pred CCCCccccchhhccccHHHHHHHHHhCCCCCC
Confidence 99999888888999999999999999999963
No 56
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.96 E-value=1.2e-27 Score=289.66 Aligned_cols=289 Identities=26% Similarity=0.386 Sum_probs=235.1
Q ss_pred EECch-HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcC
Q 000086 53 IANNG-MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTR 131 (2304)
Q Consensus 53 Ian~G-~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~ 131 (2304)
..|+| ..+..+|+++|+. . .+.++++ +.+.+++....||+++..|. +.+.| ++.++++|++++
T Consensus 3 wfn~~~s~~~~~i~~lr~~--~--------~~~i~~s--h~~~~~~~~~~aD~~~~eP~--~~~~y--v~~~l~~C~~~~ 66 (329)
T PF15632_consen 3 WFNRGFSSQRDIIRSLRAN--R--------DFTIIAS--HRDPRAPILYAADEAYLEPA--DGEEY--VDWCLDFCKEHG 66 (329)
T ss_pred EecCCCccHHHHHHHHHcC--C--------CeEEEEE--eCCCCchHHhcCceeeecCC--CHHHH--HHHHHHHHHHhC
Confidence 44554 4667889999975 1 2234466 66689999999999999997 66788 899999999999
Q ss_pred CCEEEeCCCcCCCCCchHHHHHHCCCeEEC-CCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCccc
Q 000086 132 VDAVWPGWGHASEIPELPDTLSTKGIIFLG-PPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2304)
Q Consensus 132 vDaV~pG~G~~SEn~~la~~l~~~GI~fiG-Ps~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~ 210 (2304)
+|+++||+.... -....+.+++.|+.+.- ++.+++..+.||..+.+.+++.|||+|+|..
T Consensus 67 Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~------------------ 127 (329)
T PF15632_consen 67 IDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWR------------------ 127 (329)
T ss_pred CeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEE------------------
Confidence 999999965332 12233666778999987 8899999999999999999999999999987
Q ss_pred ccccccCCHHHHHHHhhccCCc---EEEeecCCCCCcCeEEEC-CHHHHHHHHH-------------HHHhhCCCCcEEE
Q 000086 211 YRQACVYTTEEAIASCQVVGYP---AMIKASWGGGGKGIRKVH-NDDEVRALFK-------------QVQGEVPGSPIFI 273 (2304)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyP---VVIKPs~GgGGkGIr~V~-s~eEL~~a~~-------------~~~~e~~~~~i~V 273 (2304)
+++.++...+++++++| +.|||..|.||.|.|+++ +.+++...++ .+.....-.+++|
T Consensus 128 -----v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llv 202 (329)
T PF15632_consen 128 -----VRTADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLV 202 (329)
T ss_pred -----eCCHHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEE
Confidence 89999999999988887 999999999999999999 5555555444 1111112358999
Q ss_pred EEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEE
Q 000086 274 MKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYS 353 (2304)
Q Consensus 274 EeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d 353 (2304)
|+|++| .|++|+++++. |++++..+|.-. -+.|.+ +...++.+.|.++++.+|..|..+|+|++|
T Consensus 203 MeyL~G-~EySVD~l~~~-G~viaaV~R~K~--G~~q~l-----------~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d 267 (329)
T PF15632_consen 203 MEYLPG-PEYSVDCLADE-GRVIAAVPRRKL--GRRQVL-----------ENDEELIELARRLAEAFGLDGLFNIQFRYD 267 (329)
T ss_pred ecCCCC-CeEEEEEEecC-CEEEEEEEEEec--CceeEE-----------EECHHHHHHHHHHHHHhCCCceEEEEEEEc
Confidence 999988 69999999997 999877655422 112222 234678999999999999999999999997
Q ss_pred ccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000086 354 METGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2304)
Q Consensus 354 ~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ 398 (2304)
.+|.+++||||||++|+.+.+- .+|||||.+.+..++|.+.+.
T Consensus 268 -~~g~p~LLEINpR~sGGi~~s~-~aGvNlp~la~~~~lG~~~~~ 310 (329)
T PF15632_consen 268 -EDGNPKLLEINPRPSGGIGYSC-AAGVNLPYLAVKLALGEPIPP 310 (329)
T ss_pred -CCCCEEEEEeCCCCccchhhHh-hcCCChHHHHHHHHcCCCCCC
Confidence 4889999999999999998886 699999999999999998763
No 57
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=99.96 E-value=3.5e-28 Score=290.23 Aligned_cols=213 Identities=17% Similarity=0.231 Sum_probs=172.7
Q ss_pred cCCCCChHHHhhcccCCCCCcccccccCCCceecccC--CC--CeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCC
Q 000086 1893 PENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG--WA--RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLD 1968 (2304)
Q Consensus 1893 P~~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~--~a--~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~ 1968 (2304)
|.+||| +++|+. +|| +|+|+..+ |+ +++|||+|||+|+||+|||++++..
T Consensus 67 ~~Rp~~-~d~I~~-----------l~d--~f~El~gdr~~~dd~aiV~G~ari~GrpV~VIa~d~g~~------------ 120 (319)
T PRK05724 67 PQRPYT-LDYIEL-----------LFT--DFTELHGDRAFADDKAIVGGLARLNGRPVMVIGHQKGRD------------ 120 (319)
T ss_pred CCCCCH-HHHHHH-----------Hhh--HHHHHcCCcCCCCCCceEEEEEEECCEEEEEEEecCCcc------------
Confidence 338999 488887 677 69999988 67 9999999999999999999975422
Q ss_pred ccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1969 SHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1969 s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
. ...+.+.+|+++|++++|++||+++|++|++|||+|+||+||.+|..+|..|+.+++++.+.+++..+||+|++|+
T Consensus 121 ~-~e~~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIi-- 197 (319)
T PRK05724 121 T-KEKIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVI-- 197 (319)
T ss_pred c-cccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEe--
Confidence 1 2223456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHH
Q 000086 2049 AELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVES 2128 (2304)
Q Consensus 2049 ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~ 2128 (2304)
|+.+||+..+++. +|+ ++|||+|.++||+|||++.|.||+.+.. ++.++
T Consensus 198 Geg~sGGAla~~~---aD~--v~m~~~A~~svisPEg~a~Il~~~~~~a--------------------------~~aae 246 (319)
T PRK05724 198 GEGGSGGALAIGV---GDR--VLMLEYSTYSVISPEGCASILWKDASKA--------------------------PEAAE 246 (319)
T ss_pred CCccHHHHHHHhc---cCe--eeeecCceEeecCHHHHHHHHhcCchhH--------------------------HHHHH
Confidence 5555554444443 577 9999999999999999999999875110 00000
Q ss_pred HHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCcc-----chHHHHHHHHHHHHH
Q 000086 2129 LQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRVA 2189 (2304)
Q Consensus 2129 ~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~-----~tR~~~~~~L~r~l~ 2189 (2304)
.+.-||..|++.|+||+||+.. .....++.+|+..|.
T Consensus 247 ------------------------~~~ita~~l~~~g~iD~II~Ep~gga~~~~~~~~~~l~~~i~ 288 (319)
T PRK05724 247 ------------------------AMKITAQDLKELGIIDEIIPEPLGGAHRDPEAAAAALKEALL 288 (319)
T ss_pred ------------------------HcCCCHHHHHHCCCceEeccCCCCCccCCHHHHHHHHHHHHH
Confidence 1223788999999999999843 334557777777654
No 58
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=99.95 E-value=1.9e-27 Score=283.61 Aligned_cols=211 Identities=20% Similarity=0.261 Sum_probs=171.0
Q ss_pred cCCCCChHHHhhcccCCCCCcccccccCCCceecccCCC----CeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCC
Q 000086 1893 PENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLD 1968 (2304)
Q Consensus 1893 P~~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a----~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~ 1968 (2304)
|.+|||+ ++|.. +|| +|+|+.++|+ +++|||+|||+|+||+|||++.+. +
T Consensus 67 ~~Rp~~~-d~i~~-----------l~d--~f~EL~gd~~~~dd~aiVtG~ari~GrpV~VIa~d~g~------------~ 120 (316)
T TIGR00513 67 PDRPYTL-DYIEL-----------IFD--DFFELAGDRAYADDKAIVGGIARLDGRPVVVIGHQKGR------------D 120 (316)
T ss_pred CCCCchH-HHHHH-----------Hhh--hheeeccccCCCCCCceEEEEEEECCEEEEEEEecCCc------------c
Confidence 3389999 88887 788 4999999888 999999999999999999997431 1
Q ss_pred ccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1969 SHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1969 s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
..++ +...+|.++|.+++|++|++++|+++++|||+|+||+||.+|...|..|+.+++++.+.+++..+||+|++|+
T Consensus 121 ~~e~-~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVVi-- 197 (316)
T TIGR00513 121 TKEK-LRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVI-- 197 (316)
T ss_pred cccc-ccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe--
Confidence 2233 3455789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcC-CchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHH
Q 000086 2049 AEL-RGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVE 2127 (2304)
Q Consensus 2049 ge~-~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~ 2127 (2304)
|++ .||||.+. .+|+ ++|||+|.++||+|||++.|.||+.+.. ++
T Consensus 198 GeggsGGAla~~----~aD~--v~m~~~a~~sVisPEg~a~Il~kd~~~a--------------------------~~-- 243 (316)
T TIGR00513 198 GEGGSGGALAIG----VGDK--VNMLEYSTYSVISPEGCAAILWKDASKA--------------------------PK-- 243 (316)
T ss_pred cccccHHHhhhc----cCCE--EEEecCceEEecCHHHHHHHhccchhhH--------------------------HH--
Confidence 454 55666443 2587 9999999999999999999999965110 00
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCcc-----chHHHHHHHHHHHH
Q 000086 2128 SLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRV 2188 (2304)
Q Consensus 2128 ~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~-----~tR~~~~~~L~r~l 2188 (2304)
|.++ +.-||..+++.|+||+||+.. .-...++.+|+..|
T Consensus 244 --------------------aae~--~~~ta~~l~~~G~iD~II~ep~~ga~~~~~~~~~~~~~~~ 287 (316)
T TIGR00513 244 --------------------AAEA--MKITAPDLKELGLIDSIIPEPLGGAHRNPLAAAASLKEQL 287 (316)
T ss_pred --------------------HHHH--ccCCHHHHHHCCCCeEeccCCCCccccCHHHHHHHHHHHH
Confidence 0111 122688999999999999843 33345666666654
No 59
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.95 E-value=1.4e-26 Score=289.90 Aligned_cols=249 Identities=19% Similarity=0.213 Sum_probs=200.0
Q ss_pred CHHHHHHHHHHcCC-CEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccC
Q 000086 119 NVQLIVEMAEMTRV-DAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKI 197 (2304)
Q Consensus 119 dvd~Ii~iA~~~~v-DaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~ 197 (2304)
....++++.++.+. ..+. |++|+..++..|+..||+++||+++++..+.||..+|++++++|||+|||...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~----fl~~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~---- 163 (493)
T PRK06524 92 RHPETLEFIKRRGPGGKAC----FVMFDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLG---- 163 (493)
T ss_pred cCHHHHHHHHhhCCCCceE----EecCCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccc----
Confidence 34456666666654 2222 78999999999999999999999999999999999999999999999998750
Q ss_pred CCCCcccccCcccccccccCCHHHHHHHhhc--cCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000086 198 PPESCLVTIPDDVYRQACVYTTEEAIASCQV--VGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2304)
Q Consensus 198 ~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~--IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEe 275 (2304)
.+.+.+++...++. +||||||||..|++|+|+++|++.+|+..+++.+.. ...++||+
T Consensus 164 -----------------~~~~~eel~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~---~~~viVEe 223 (493)
T PRK06524 164 -----------------RVDSYDELSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVG---QPEIKVMK 223 (493)
T ss_pred -----------------cCCCHHHHHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcC---CCCEEEEe
Confidence 13456666666654 999999999999999999999999999998887653 25799999
Q ss_pred eccccceeeEEEEEcCCCCEEEeec------cccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHC---Cceeee
Q 000086 276 VASQSRHLEVQLLCDQYGNVAALHS------RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCV---NYVGAA 346 (2304)
Q Consensus 276 yI~g~reieVqvl~D~~G~vi~l~~------RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakal---Gy~Ga~ 346 (2304)
|+.+ +|++|+++.+.+|+++.... +++..++.+.......|+. +++++.+++.+.|.+++++| ||.|.+
T Consensus 224 ~I~G-rEitVev~vd~dG~Vv~~~~~e~vg~~Ei~~yr~G~~~~~i~PA~-L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~ 301 (493)
T PRK06524 224 RIRN-VEVCIEACVTRHGTVIGPAMTSLVGYPELTPYRGGWCGNDIWPGA-LPPAQTRKAREMVRKLGDVLSREGYRGYF 301 (493)
T ss_pred ccCc-EEEEEEEEEeCCCCEEeccccccccceEEEEccCCeEEEEEccCC-CCHHHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 9965 89999999998888764321 1121122222223456875 88999999999999999988 899999
Q ss_pred EEEEEEEccCCcEEEEEeccCCCCCcceehhhh----cCCHHHHHHHHHcCCCCC
Q 000086 347 TVEYLYSMETGEYYFLELNPRLQVEHPVTEWIA----EINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vt----GVDL~~~qL~iA~G~pL~ 397 (2304)
+|||+++.++|++||+|||||++|+|+++++++ +.+++..+++..||.|..
T Consensus 302 rVDFfvd~ddgevYfnEINPR~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~ 356 (493)
T PRK06524 302 EVDLLHDLDADELYLGEVNPRLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYE 356 (493)
T ss_pred EEEEEEECCCCeEEEEEEeCCcccccccchhhhccCCChhHHHHHHHHHhCCCce
Confidence 999999854688999999999999999998854 455566677788898865
No 60
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.95 E-value=3.9e-25 Score=267.18 Aligned_cols=333 Identities=20% Similarity=0.231 Sum_probs=250.2
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCCcCCCCCc---hHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCC
Q 000086 118 ANVQLIVEMAEMTRVDAVWPGWGHASEIPE---LPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSH 194 (2304)
Q Consensus 118 ~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~---la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~ 194 (2304)
.|.+.|+++|++.++|.+++| .|.|. +.+.|++.||..+||+.+++++-++|..+|.+++++|||++.|..
T Consensus 50 ~~~~~lv~fA~~~~idl~vVG----PE~pL~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~-- 123 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVG----PEAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEV-- 123 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEEC----CcHHHhhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccc--
Confidence 568999999999999999999 33333 348999999999999999999999999999999999999998765
Q ss_pred ccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCc
Q 000086 195 VKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSP 270 (2304)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~ 270 (2304)
+++.+++.++.++.|.|++|||..-.+||||.++.+.++..++.+.+... ..+..
T Consensus 124 ---------------------f~~~e~a~ayi~~~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~ 182 (428)
T COG0151 124 ---------------------FTDPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGAR 182 (428)
T ss_pred ---------------------cCCHHHHHHHHHHcCCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCc
Confidence 67999999999999999999999999999999999999999998877654 23467
Q ss_pred EEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEe------------CCCCCCCHHHHHHHH-HHHHHHH
Q 000086 271 IFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEE------------GPITVAPLETVKKLE-QAARRLA 337 (2304)
Q Consensus 271 i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiiee------------aPa~~l~~e~~~~m~-e~A~rla 337 (2304)
++||+|++| .|++++++.|+. +++.+. .. ..|.++.+. +|+|.+++++.++.. +.....+
T Consensus 183 VVIEEfL~G-eE~S~~a~~DG~-~v~p~p----~a-QDhKra~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv 255 (428)
T COG0151 183 VVIEEFLDG-EEFSLQAFVDGK-TVIPMP----TA-QDHKRAYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTV 255 (428)
T ss_pred EEEEecccc-eEEEEEEEEcCC-eEEECc----cc-cccccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999987 799999999975 444432 22 346555552 588989998777655 5555555
Q ss_pred HHC-----CceeeeEEEEEEEccCCcEEEEEeccCCCC-CcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCC
Q 000086 338 KCV-----NYVGAATVEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHG 411 (2304)
Q Consensus 338 kal-----Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~ 411 (2304)
+.+ .|+|+....++++ .++|++||.|.|++- |....-....-||.+..+.++.|.--+
T Consensus 256 ~gm~~EG~~f~GvLy~glMlt--~~GPkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~g~L~~-------------- 319 (428)
T COG0151 256 EGMAKEGYPFRGVLYAGLMLT--ADGPKVIEFNARFGDPETQVVLPLLESDLVELLLAAVDGKLDE-------------- 319 (428)
T ss_pred HHHHHcCCCceEEEEeEEEEc--CCCcEEEEEecccCChhHHHHHHhccccHHHHHHHHHhCCccc--------------
Confidence 544 5789999999999 455999999999973 322222335679999999999995321
Q ss_pred CcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccc-cCCCcEEEE-EeeeeC-Cccccc
Q 000086 412 GVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSF-KSKPNVWAY-FSVKSG-GGIHEF 488 (2304)
Q Consensus 412 ~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~-~s~~~V~~~-~~v~~G-~~i~~~ 488 (2304)
..+.|. +.....+.+++++-|+++| ..|....+.. ....++.++ .++... +.--..
T Consensus 320 -----------~~~~~~----~~~a~v~vvlA~~GYP~~~------~kG~~I~~~~~~~~~~~~vf~Agv~~~~~~~lvt 378 (428)
T COG0151 320 -----------VEILFW----DKGAAVGVVLAAEGYPGDP------EKGDVITGDEEAEEEGAKVFHAGVKLDDGGQLVT 378 (428)
T ss_pred -----------cchhhc----cCCceEEEEEecCCCCCCC------CCCCEEecChhhcccCcEEEEeeEeccCCceEEe
Confidence 011121 1123346677777777764 4564332221 111244333 344432 212233
Q ss_pred CCCccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 489 SDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 489 ~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
..++.-.|++.|+|.+||+++++.+++.++..|
T Consensus 379 ~GgRvL~v~~~g~t~~eA~~~ay~~~~~i~~~g 411 (428)
T COG0151 379 SGGRVLAVVGTGDTLEEAQEKAYEALEKIHFDG 411 (428)
T ss_pred cCCeEEEEEecCCCHHHHHHHHHHHHhhcCCCC
Confidence 456778899999999999999999999999988
No 61
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=99.94 E-value=2.5e-27 Score=281.49 Aligned_cols=174 Identities=21% Similarity=0.253 Sum_probs=149.6
Q ss_pred CceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcC-----CCEEEEEcCCCCCCCchhh
Q 000086 1622 NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKK-----LPLIYLAANSGARIGVAEE 1696 (2304)
Q Consensus 1622 n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~-----lP~I~l~~s~GARi~~~e~ 1696 (2304)
-+.|||++..++ +||+|+|+++|+||++||+|+++++|+.++.|+|.+.+ +|+|+|.+|||+||+ |+
T Consensus 54 ~~dGvV~G~G~I------~Gr~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlq--Eg 125 (301)
T PRK07189 54 FDDGVVVGKGTL------DGRPVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQ--EA 125 (301)
T ss_pred CCCcEEEEEEEE------CCEEEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCcc--ch
Confidence 457999999876 99999999999999999999999999999999999999 999999999999999 88
Q ss_pred hhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccc
Q 000086 1697 VKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRA 1776 (2304)
Q Consensus 1697 v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~a 1776 (2304)
..++++++ .+|. .+.+.||.
T Consensus 126 ~~~L~~~a------------~i~~----------------------------------------~~~~ls~~-------- 145 (301)
T PRK07189 126 NAGLAAIA------------EIMR----------------------------------------AIVDLRAA-------- 145 (301)
T ss_pred HHHHHHHH------------HHHH----------------------------------------HHHHHhCC--------
Confidence 87775443 1111 11122332
Q ss_pred cccceEEEEEcCc--ccchhhhhhcccCEEEEecCcceEecChHHHHHhhcccccccccc-------cCcceeecccCce
Q 000086 1777 YKETFTLTYVTGR--TVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQ-------LGGPKIMATNGVV 1847 (2304)
Q Consensus 1777 y~~iptis~vtg~--t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~-------lGG~~i~~~nGv~ 1847 (2304)
||+|++++|+ |+||+||.+.+||++||++++.|+|+||++|++++|.+.| ++++ +||...+ .||++
T Consensus 146 ---VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~VIe~~~G~e~~-d~~d~~~vw~~lGG~h~~-~sG~~ 220 (301)
T PRK07189 146 ---VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGPEVIEQEAGVEEF-DSRDRALVWRTTGGKHRY-LSGLA 220 (301)
T ss_pred ---CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCHHHHHHhcCCccc-CHHHhcccccccCcceee-ecccc
Confidence 6999999999 9999999999999999999999999999999999996554 4566 9997443 59999
Q ss_pred EEEecCcHHHHHHHHHHHhcCCC
Q 000086 1848 HLTVSDDLEGISAILKWLSYVPP 1870 (2304)
Q Consensus 1848 d~~v~dd~~~~~~i~~~LsylP~ 1870 (2304)
|.+|+||.++++. ++++|+..
T Consensus 221 D~~v~dd~~a~~~--~~~~~~~~ 241 (301)
T PRK07189 221 DALVDDDVAAFRA--AALALLAR 241 (301)
T ss_pred eEEeCCHHHHHHH--HHHHHHhc
Confidence 9999999999998 78899864
No 62
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=99.94 E-value=4.4e-27 Score=276.96 Aligned_cols=172 Identities=22% Similarity=0.277 Sum_probs=145.9
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHH-----cCCCEEEEEcCCCCCCCchhhh
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACA-----KKLPLIYLAANSGARIGVAEEV 1697 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~-----~~lP~I~l~~s~GARi~~~e~v 1697 (2304)
+.|||++..++ +||+|+|+++|+||++||+|+++++|+.+++++|.+ .++|+|+|.+|||+||| |++
T Consensus 46 ~dgvV~G~G~I------~Gr~v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlq--Eg~ 117 (274)
T TIGR03133 46 DDGVVVGRGTI------DGKPVVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQ--EAN 117 (274)
T ss_pred CCeEEEEEEEE------CCEEEEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChh--hhH
Confidence 57899999876 999999999999999999999999999999999998 67999999999999998 888
Q ss_pred hhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccccccccccccccccccc
Q 000086 1698 KACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAY 1777 (2304)
Q Consensus 1698 ~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay 1777 (2304)
.+|++++ .+|. .+.+.||.
T Consensus 118 ~~L~~~a------------~i~~----------------------------------------~~~~ls~~--------- 136 (274)
T TIGR03133 118 AGLIAIA------------EIMR----------------------------------------AILDARAA--------- 136 (274)
T ss_pred HHHHHHH------------HHHH----------------------------------------HHHHHhCC---------
Confidence 8886554 1111 01122232
Q ss_pred ccceEEEEEcCc--ccchhhhhhcccCEEEEecCcceEecChHHHHHhhccccccccc------ccCcceeecccCceEE
Q 000086 1778 KETFTLTYVTGR--TVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHM------QLGGPKIMATNGVVHL 1849 (2304)
Q Consensus 1778 ~~iptis~vtg~--t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~------~lGG~~i~~~nGv~d~ 1849 (2304)
||+|++++|| |+||+||+++++|++||++++.|+|+||++|++++|++.|++.+ .+||+.. +.+|++|.
T Consensus 137 --vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~VIe~~~G~e~~~~~d~~l~~~~lGG~~~-~~sG~~D~ 213 (274)
T TIGR03133 137 --VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGKHR-FLSGDADV 213 (274)
T ss_pred --CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHHHHHHhcCCCccCHHHhcccccccchHhH-hhcccceE
Confidence 6999999999 89999999999999999999999999999999999987665543 5999964 45999999
Q ss_pred EecCcHHHHHHHH-HHHh
Q 000086 1850 TVSDDLEGISAIL-KWLS 1866 (2304)
Q Consensus 1850 ~v~dd~~~~~~i~-~~Ls 1866 (2304)
+++||.++++... ++|.
T Consensus 214 ~v~dd~~a~~~~~~~~l~ 231 (274)
T TIGR03133 214 LVEDDVDAFRAAVIAALA 231 (274)
T ss_pred EeCCHHHHHHHHHHHHHh
Confidence 9999999997654 4554
No 63
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=99.94 E-value=5.1e-26 Score=267.00 Aligned_cols=167 Identities=20% Similarity=0.232 Sum_probs=141.1
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceeccc--CCCC--eEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCcc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE--GWAR--TVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSH 1970 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~--~~a~--~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~ 1970 (2304)
....+|+.|+. |||. |+|+.+ .|++ ++|||+|||+|+||+|||++.+.. ..
T Consensus 15 ~r~~are~I~~-----------L~D~--F~El~g~~~~~~d~~vItG~gri~Gr~V~via~~~~~~------------~~ 69 (256)
T PRK12319 15 GRLTTLDYATL-----------IFDD--FMELHGDRHFRDDGAVVGGIGYLAGQPVTVVGIQKGKN------------LQ 69 (256)
T ss_pred CCCCHHHHHHH-----------hCch--heeccCCCCCCCCCcEEEEEEEECCEEEEEEEeccCCc------------cc
Confidence 34567888886 7885 999975 4664 699999999999999999965411 11
Q ss_pred ccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCc
Q 000086 1971 ERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAE 2050 (2304)
Q Consensus 1971 ~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge 2050 (2304)
+. ....+|+++|++++|++||+++|+++++|||+|+||+||.+|...|..|+.+.+++++.+++..+||+|++|+ |+
T Consensus 70 d~-~~~~~G~~~~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~--G~ 146 (256)
T PRK12319 70 DN-LKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIII--GE 146 (256)
T ss_pred cc-eeeeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEe--CC
Confidence 11 2345799999999999999999999999999999999999999999999999999999999999999999999 55
Q ss_pred CCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchh
Q 000086 2051 LRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTK 2094 (2304)
Q Consensus 2051 ~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~ 2094 (2304)
++||+..++. .+|+ ++|||++.++||+|||++.|.||+.
T Consensus 147 ~~gGgA~a~~---~~D~--v~m~~~a~~~v~~pe~~a~il~~~~ 185 (256)
T PRK12319 147 GGSGGALALA---VADQ--VWMLENTMYAVLSPEGFASILWKDG 185 (256)
T ss_pred cCcHHHHHhh---cCCE--EEEecCceEEEcCHHHHHHHHhcCc
Confidence 5665444443 3688 9999999999999999999999864
No 64
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=99.94 E-value=9.6e-26 Score=262.16 Aligned_cols=183 Identities=23% Similarity=0.302 Sum_probs=157.2
Q ss_pred cccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHH
Q 000086 1913 WIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQA 1992 (2304)
Q Consensus 1913 ~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~ 1992 (2304)
|+..|||.++|+|..+ ++|||+|||+|+|||||+++. +..++.++++|.|+|
T Consensus 5 ~l~~l~d~~~~~e~~~----~vv~G~arl~G~~V~vIa~~~------------------------~~~~g~~~~~k~A~~ 56 (238)
T TIGR03134 5 WLAALFPNGHEVAGDP----GVLVGSAELAGGKVTVIGVVP------------------------DAEVGLDEALALAQA 56 (238)
T ss_pred HHHHHcCCCcEEecCC----cEEEEEEEECCEEEEEEEECC------------------------CCcCChHHHHHHHHH
Confidence 4555899999999986 999999999999999999942 226777999999999
Q ss_pred HHHh-h-ccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCC---CCEEEEEcCCCcCCchhhhhcccccCCcc
Q 000086 1993 LMDF-N-REELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK---QPVFVYIPMMAELRGGAWVVVDSRINSDH 2067 (2304)
Q Consensus 1993 i~~~-~-~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~---vP~i~~I~~~ge~~GGa~vv~~~~i~~d~ 2067 (2304)
+.+| + +|++|||+|+|||||.+|.++|..|+.+++|+++++++.++ +|+|++|+ |+.+||+|++++ +++|.
T Consensus 57 v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~--g~a~ggg~lamg--~~ad~ 132 (238)
T TIGR03134 57 VLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIY--GKAISGAFLAHG--LQADR 132 (238)
T ss_pred HHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEe--CCccHHHHHHHc--cCcCe
Confidence 9996 5 59999999999999999999999999999999999999887 99999999 788999999995 56788
Q ss_pred ceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHH
Q 000086 2068 IEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQV 2147 (2304)
Q Consensus 2068 ~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~ 2147 (2304)
+||||+|.++||+||+++.|.||+.+.+ + ++
T Consensus 133 --v~Alp~A~i~vm~~e~aa~I~~~~~~~~-----------------------------~------------------e~ 163 (238)
T TIGR03134 133 --IIALPGAMVHVMDLESMARVTKRSVEEL-----------------------------E------------------AL 163 (238)
T ss_pred --EEEcCCcEEEecCHHHHHHHHccCHhHH-----------------------------H------------------HH
Confidence 9999999999999999999999865211 0 11
Q ss_pred HHHhhhhcccHHHHHHcCCcceecCccch
Q 000086 2148 ATKFAELHDTSLRMAAKGVIKEVVDWDKS 2176 (2304)
Q Consensus 2148 a~~fad~hdt~~rm~~~G~Id~vi~~~~t 2176 (2304)
|..|..+..++..+.+.|+||+||++.+.
T Consensus 164 a~~~~~~a~~~~~~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 164 AKSSPVFAPGIENFVKLGGVHALLDVADA 192 (238)
T ss_pred HHhhhhhccCHHHHHhCCCccEEeCCCCc
Confidence 22333344567889999999999998884
No 65
>PRK06849 hypothetical protein; Provisional
Probab=99.94 E-value=6.5e-26 Score=285.21 Aligned_cols=279 Identities=14% Similarity=0.158 Sum_probs=208.1
Q ss_pred CccEEEEECchH-HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCC-CCCCccCHHHHH
Q 000086 47 PIHSILIANNGM-AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGT-NNNNYANVQLIV 124 (2304)
Q Consensus 47 ~~~kILIan~G~-~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~-~~~sY~dvd~Ii 124 (2304)
..+||||+|++. .++.++|++++.|++++ ++.++....+.+.+++|+++.+|... ..+.| ++.|+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi-----------~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~--~~~L~ 69 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVI-----------LADSLKYPLSRFSRAVDGFYTIPSPRWDPDAY--IQALL 69 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-----------EEeCCchHHHHHHHhhhheEEeCCCCCCHHHH--HHHHH
Confidence 457999999765 79999999999999985 33333333456788999999986432 23456 79999
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccc
Q 000086 125 EMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2304)
Q Consensus 125 ~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~ 204 (2304)
++++++++|+|+|+.+.........+.++ .++.+++|+.++++.+.||..++++++++|||+|++..
T Consensus 70 ~i~~~~~id~vIP~~e~~~~~a~~~~~l~-~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~------------ 136 (389)
T PRK06849 70 SIVQRENIDLLIPTCEEVFYLSHAKEELS-AYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYL------------ 136 (389)
T ss_pred HHHHHcCCCEEEECChHHHhHHhhhhhhc-CCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEE------------
Confidence 99999999999999763311111122232 35778899999999999999999999999999999775
Q ss_pred ccCcccccccccCCHHHHHHHhhcc-CCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000086 205 TIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~rei 283 (2304)
+++.+++.+++.+. |||+|+||..|+||.|+.++.+.+.+... . .....++++|||++| .++
T Consensus 137 -----------v~~~~~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~~~----~-~~~~~~~ivQe~I~G-~e~ 199 (389)
T PRK06849 137 -----------ITDPEAIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEAALKEL----P-ISKDNPWVMQEFIQG-KEY 199 (389)
T ss_pred -----------eCCHHHHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHHHhccc----c-cCCCCCeEEEEEecC-CeE
Confidence 67888888877776 99999999999999999999995544321 1 122357999999987 578
Q ss_pred eEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEE
Q 000086 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLE 363 (2304)
++..+.. .|+++.... ..+.+ ....+......+...++|.+.+.++++++||.|.+++||+++ ++|++|+||
T Consensus 200 ~~~~~~~-~G~v~~~~~----~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~G~~~~df~~~-~~g~~~~iE 271 (389)
T PRK06849 200 CSYSIVR-SGELRAHSC----YKPEY--CAGSGAQIAFQPINHPRIEEFVTHFVKELNYTGQISFDFIET-ENGDAYPIE 271 (389)
T ss_pred EEEEEEE-CCEEEEEEE----eeccc--cCCCCceeEeEECCcHHHHHHHHHHHHhcCceeEEEEEEEEC-CCCCEEEEE
Confidence 7877764 377765422 11111 010100000111124689999999999999999999999998 478999999
Q ss_pred eccCCCCCcceeh
Q 000086 364 LNPRLQVEHPVTE 376 (2304)
Q Consensus 364 INpRlqgehpvtE 376 (2304)
+|||+++..+++.
T Consensus 272 iNpR~~~g~~l~~ 284 (389)
T PRK06849 272 CNPRTTSGLHLFD 284 (389)
T ss_pred ecCCCCceeEEcC
Confidence 9999999888775
No 66
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=99.94 E-value=7e-26 Score=273.76 Aligned_cols=200 Identities=16% Similarity=0.192 Sum_probs=162.7
Q ss_pred cccCCCceecccCCC----CeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHH
Q 000086 1917 IFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQA 1992 (2304)
Q Consensus 1917 l~D~gsF~E~~~~~a----~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~ 1992 (2304)
+|| +|+|+.++|+ +++|||+|||+|+||+|||++.+.. ..+++. ..+|+++|++++|++||
T Consensus 149 i~d--df~EL~Gdr~~~dD~aIVtG~grI~GrpV~VIandkg~~------------~ke~~~-rnfG~~~peGyRKAlR~ 213 (431)
T PLN03230 149 MTD--KWVELHGDRAGFDDPAIVCGIGSMEGMSFMFIGHQKGRN------------TKENIY-RNFAMPQPNGYRKALRF 213 (431)
T ss_pred hhh--HHhhhcCcccCCCCCCeEEEEEEECCEEEEEEEeccCcc------------cccccc-cCCCCCCHHHHHHHHHH
Confidence 677 5999999999 9999999999999999999976532 123333 33589999999999999
Q ss_pred HHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcC-CchhhhhcccccCCccceee
Q 000086 1993 LMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL-RGGAWVVVDSRINSDHIEMY 2071 (2304)
Q Consensus 1993 i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~-~GGa~vv~~~~i~~d~~~~~ 2071 (2304)
+++|++|++|||+|+||+||.+|..+|..|+.+++++.+.+++..+||+|++|+ |+. .|||+.+.. .|+ ++
T Consensus 214 mklAekf~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVVi--GeGgSGGAlalg~----aD~--Vl 285 (431)
T PLN03230 214 MRHAEKFGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVI--GEGGSGGALAIGC----GNR--ML 285 (431)
T ss_pred HHHHHHcCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe--CCCCcHHHHHhhc----CCE--EE
Confidence 999999999999999999999999999999999999999999999999999999 554 556665443 377 99
Q ss_pred cccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHh
Q 000086 2072 ADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKF 2151 (2304)
Q Consensus 2072 A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~f 2151 (2304)
|||+|.++|++|||++.|.|++.... ++.+
T Consensus 286 Mle~A~ysVisPEgaAsILwkd~~~A--------------------------~eAA------------------------ 315 (431)
T PLN03230 286 MMENAVYYVASPEACAAILWKSAAAA--------------------------PKAA------------------------ 315 (431)
T ss_pred EecCCEEEecCHHHHHHHHhccccch--------------------------HHHH------------------------
Confidence 99999999999999999999975110 0000
Q ss_pred hhhcccHHHHHHcCCcceecCcc-----chHHHHHHHHHHHHH
Q 000086 2152 AELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRVA 2189 (2304)
Q Consensus 2152 ad~hdt~~rm~~~G~Id~vi~~~-----~tR~~~~~~L~r~l~ 2189 (2304)
..+.-||..|++.|+||+||+.. .-...++.+|+..|.
T Consensus 316 ealkitA~dL~~~GiID~II~Ep~ggAh~d~~~~~~~l~~~i~ 358 (431)
T PLN03230 316 EALRITAAELVKLGVVDEIVPEPLGGAHSDPLQASKNIKEVIL 358 (431)
T ss_pred HHcCCCHHHHHhCCCCeEeccCCCCCcccCHHHHHHHHHHHHH
Confidence 01234789999999999999843 334456667766653
No 67
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=99.93 E-value=1.1e-25 Score=268.38 Aligned_cols=210 Identities=17% Similarity=0.182 Sum_probs=169.3
Q ss_pred CCChHHHhhcccCCCCCcccccccCCCceecccCCC----CeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccc
Q 000086 1896 SCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHE 1971 (2304)
Q Consensus 1896 ~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a----~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~ 1971 (2304)
....++.|.. +|| +|+|++.+|+ +++|||+|||+|+||+||+++++. +..|
T Consensus 72 Rp~~~d~i~~-----------l~d--~f~El~gd~~~~dd~avV~Glgri~GrpV~VIa~dkg~------------~~~e 126 (322)
T CHL00198 72 RPTTLDYIPY-----------ILD--EWIELHGDRGGSDDPALVGGIGKINGRTIVFLGHQRGR------------NTKE 126 (322)
T ss_pred CCCHHHHHHH-----------HhH--HHHHHccccccCCCCceEEEEEEECCEEEEEEEecCCc------------cchh
Confidence 3456777776 788 4999999997 999999999999999999997642 1233
Q ss_pred cccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcC
Q 000086 1972 RVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL 2051 (2304)
Q Consensus 1972 ~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~ 2051 (2304)
++ ...+|.++|++++|++|++++|+++++|||+|+||+||.+|..+|..|+.+.+++.+.+++..+||+|++|+ |+.
T Consensus 127 ~~-~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVVi--Geg 203 (322)
T CHL00198 127 NV-LRNFGMPSPGGYRKALRLMKHANKFGLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTII--GEG 203 (322)
T ss_pred hh-hhcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEe--Ccc
Confidence 33 445788999999999999999999999999999999999999999999999999999999999999999999 555
Q ss_pred Cc-hhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHH
Q 000086 2052 RG-GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQ 2130 (2304)
Q Consensus 2052 ~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~ 2130 (2304)
+| ||| +++ .+|+ ++|||+|.++|++|||++.|.||+.+... +. + +
T Consensus 204 gsGGAl-al~---~aD~--V~m~e~a~~sVisPEg~a~Il~~d~~~a~--------------------------~a-A-~ 249 (322)
T CHL00198 204 GSGGAL-GIG---IGDS--IMMLEYAVYTVATPEACAAILWKDSKKSL--------------------------DA-A-E 249 (322)
T ss_pred cHHHHH-hhh---cCCe--EEEeCCeEEEecCHHHHHHHHhcchhhHH--------------------------HH-H-H
Confidence 44 454 444 2588 99999999999999999999999762210 00 0 0
Q ss_pred HHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCcc-----chHHHHHHHHHHHHH
Q 000086 2131 QQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRVA 2189 (2304)
Q Consensus 2131 ~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~-----~tR~~~~~~L~r~l~ 2189 (2304)
.+.-||..|++.|+||+||+.. .....++.+|+..|.
T Consensus 250 ----------------------~~~ita~dL~~~giiD~ii~Ep~ggah~~~~~~~~~l~~~~~ 291 (322)
T CHL00198 250 ----------------------ALKITSEDLKVLGIIDEIIPEPIGGAQADPASASKILKKKLI 291 (322)
T ss_pred ----------------------HcCCCHHHHHhCCCCeEeccCCCCccccCHHHHHHHHHHHHH
Confidence 1223789999999999999843 333456777776654
No 68
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.93 E-value=1.7e-24 Score=262.91 Aligned_cols=231 Identities=16% Similarity=0.215 Sum_probs=182.2
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+.++|.|+++. |...|+..++..|+..||+++|++++++..+.||..+|++++++|||||+|..
T Consensus 54 ~~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~--------------- 118 (296)
T PRK14569 54 ELKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKF--------------- 118 (296)
T ss_pred ccCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEE---------------
Confidence 34789999876 66678889999999999999999999999999999999999999999999764
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
+... ....+.+|||+||||..|++|+|+.+|+|.+||.++++.+.. .++++||+|++| +|++|.+
T Consensus 119 --------~~~~---~~~~~~~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~---~~~~lvEefI~G-~E~tv~v 183 (296)
T PRK14569 119 --------LTDK---LVAEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK---YGEVMIEQWVTG-KEITVAI 183 (296)
T ss_pred --------Echh---hhhHhhcCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh---cCCEEEEccccc-EEEEEEE
Confidence 1111 122467899999999999999999999999999999988753 247999999986 8999999
Q ss_pred EEcCCCCEEEeeccc--ccc-ccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEe
Q 000086 288 LCDQYGNVAALHSRD--CSV-QRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2304)
Q Consensus 288 l~D~~G~vi~l~~Rd--cSv-qrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2304)
+.++....+.+.... ... .....+.....|+. ++++..+++.+.|.++++++|++|.++|||++++ +|++||+|+
T Consensus 184 l~~~~~~~~~i~~~~~~~~~~~k~~~~~~~~~P~~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~-~g~~~vlEI 261 (296)
T PRK14569 184 VNDEVYSSVWIEPQNEFYDYESKYSGKSIYHSPSG-LCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDD-RGNFYIMEI 261 (296)
T ss_pred ECCcCcceEEEecCCCcCChhhccCCCcEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcC-CCCEEEEEe
Confidence 976532222221111 000 01112333446765 6788889999999999999999999999999983 688999999
Q ss_pred ccCCCCC----cceehhhhcCCHHHHHHHHH
Q 000086 365 NPRLQVE----HPVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 365 NpRlqge----hpvtE~vtGVDL~~~qL~iA 391 (2304)
|||++-. .|......|+|+.++..++.
T Consensus 262 N~~Pg~t~~s~~~~~~~~~G~~~~~li~~ii 292 (296)
T PRK14569 262 NSSPGMTDNSLSPKSAAAEGVDFDSFVKRII 292 (296)
T ss_pred eCCCCCCCcCHHHHHHHHcCCCHHHHHHHHH
Confidence 9999854 35555567898888776653
No 69
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.93 E-value=6.5e-24 Score=258.43 Aligned_cols=276 Identities=20% Similarity=0.302 Sum_probs=208.7
Q ss_pred CccEEEEECchH---------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCc
Q 000086 47 PIHSILIANNGM---------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNY 117 (2304)
Q Consensus 47 ~~~kILIan~G~---------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY 117 (2304)
|.+||.|+=+|. .+..+++++++.|+++. .+.. +.
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~---------~i~~--~~------------------------- 46 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAH---------PIDP--GE------------------------- 46 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEE---------EEec--Cc-------------------------
Confidence 445666665442 67889999999999974 1211 10
Q ss_pred cCHHHHHHHHHHcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCcc
Q 000086 118 ANVQLIVEMAEMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVK 196 (2304)
Q Consensus 118 ~dvd~Ii~iA~~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~ 196 (2304)
.+++..+..++|.|++.+ |...++..++..|+..|++++|++..++..+.||..++++++++|||+|+|..
T Consensus 47 ----~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~---- 118 (304)
T PRK01372 47 ----DIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIV---- 118 (304)
T ss_pred ----chHHHhccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEE----
Confidence 123334556899999875 44567788899999999999999999999999999999999999999999876
Q ss_pred CCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEe
Q 000086 197 IPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKV 276 (2304)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEey 276 (2304)
+.+.+++..+++++|||+||||..|+||+|+.++++.+++.++++++.. .+.+++||+|
T Consensus 119 -------------------~~~~~~~~~~~~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~ 177 (304)
T PRK01372 119 -------------------LTREEDLLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFK--YDDEVLVEKY 177 (304)
T ss_pred -------------------EeCcchHHHHHhhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHh--cCCcEEEEcc
Confidence 5666777778889999999999999999999999999999999887742 2568999999
Q ss_pred ccccceeeEEEEEcCCCCEEEeeccc--ccccccc--ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEE
Q 000086 277 ASQSRHLEVQLLCDQYGNVAALHSRD--CSVQRRH--QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2304)
Q Consensus 277 I~g~reieVqvl~D~~G~vi~l~~Rd--cSvqrr~--qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~ 352 (2304)
++| +|++|.++.+....++...... +...... -......|+ .++++..++|.+.+.++++++|+.|.+++||++
T Consensus 178 i~G-~E~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~-~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~ 255 (304)
T PRK01372 178 IKG-RELTVAVLGGKALPVIEIVPAGEFYDYEAKYLAGGTQYICPA-GLPAEIEAELQELALKAYRALGCRGWGRVDFML 255 (304)
T ss_pred cCC-EEEEEEEECCCccceEEEEecCCEEeeeccccCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 985 8999999987543333221110 0000000 011223354 378889999999999999999999999999999
Q ss_pred EccCCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHH
Q 000086 353 SMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 353 d~~~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~i 390 (2304)
++ +|++||+|+|||++... +......|+|+.++...+
T Consensus 256 ~~-~g~~~viEvN~~p~~~~~~~~~~~~~~~g~~~~~~~~~i 296 (304)
T PRK01372 256 DE-DGKPYLLEVNTQPGMTSHSLVPMAARAAGISFSELVDRI 296 (304)
T ss_pred cC-CCCEEEEEecCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 94 58899999999986532 222334588877666554
No 70
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.92 E-value=2.8e-24 Score=265.10 Aligned_cols=231 Identities=21% Similarity=0.231 Sum_probs=184.6
Q ss_pred CCCEEEeC-CCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcc
Q 000086 131 RVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2304)
Q Consensus 131 ~vDaV~pG-~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~ 209 (2304)
++|.|||. .|...|+..++..|+..|++++|++..++..+.||..++++++++|||+|||..
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~----------------- 143 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVV----------------- 143 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEE-----------------
Confidence 68999998 578889999999999999999999999999999999999999999999999865
Q ss_pred cccccccCCH----HHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeE
Q 000086 210 VYRQACVYTT----EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEV 285 (2304)
Q Consensus 210 ~~~~~~V~s~----eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieV 285 (2304)
+.+. .......+.+|||+||||..|+||.||.+|++.+|+.++++++... +..++||+|++| +|++|
T Consensus 144 ------~~~~~~~~~~~~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEefI~G-~E~~v 214 (333)
T PRK01966 144 ------LTRGDWEEASLAEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY--DRKVLVEQGIKG-REIEC 214 (333)
T ss_pred ------EeccccchhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc--CCcEEEEcCcCC-EEEEE
Confidence 1111 1234456789999999999999999999999999999999987643 468999999986 99999
Q ss_pred EEEEcCCCCEEEeeccccc--cccccceE-----EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCc
Q 000086 286 QLLCDQYGNVAALHSRDCS--VQRRHQKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2304)
Q Consensus 286 qvl~D~~G~vi~l~~RdcS--vqrr~qKi-----ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~ 358 (2304)
.++++ .+.+..+....+. +.....|. ....|+. +++++.+++.+.|.++++++|+.|.++|||++++ +|+
T Consensus 215 ~vl~~-~~~~~~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-~g~ 291 (333)
T PRK01966 215 AVLGN-DPKASVPGEIVKPDDFYDYEAKYLDGSAELIIPAD-LSEELTEKIRELAIKAFKALGCSGLARVDFFLTE-DGE 291 (333)
T ss_pred EEECC-CCeEcccEEEecCCceEcHHHccCCCCceEEeCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcC-CCC
Confidence 99987 3443322222221 11111222 1234664 8899999999999999999999999999999984 678
Q ss_pred EEEEEeccCCCCC----cceehhhhcCCHHHHHHHH
Q 000086 359 YYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 359 ~yfLEINpRlqge----hpvtE~vtGVDL~~~qL~i 390 (2304)
+||+|+|||++.. .|.....+|+|+.++.-++
T Consensus 292 ~~vlEiNt~Pg~t~~s~~p~~~~~~G~~~~~l~~~i 327 (333)
T PRK01966 292 IYLNEINTMPGFTPISMYPKLWEASGLSYPELIDRL 327 (333)
T ss_pred EEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999854 2334456788888776554
No 71
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.92 E-value=1.4e-23 Score=256.57 Aligned_cols=238 Identities=20% Similarity=0.265 Sum_probs=180.1
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
.++|+|||.. |...++..++..|+..|++++|+++.++..+.||..++++++++|||+|+|.. +..
T Consensus 62 ~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~-------------~~~ 128 (315)
T TIGR01205 62 EGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIV-------------LTQ 128 (315)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEE-------------Eec
Confidence 5789999964 45567788899999999999999999999999999999999999999999875 000
Q ss_pred ccccccccCCHHHH--HHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000086 209 DVYRQACVYTTEEA--IASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 209 ~~~~~~~V~s~eea--~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVq 286 (2304)
...+.+++ ..+.+.++||+||||..|+||+||.+|+|.+++.++++.+... +.+++||+|++| +|++|.
T Consensus 129 ------~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~--~~~~lvEe~i~G-~e~~v~ 199 (315)
T TIGR01205 129 ------NRASADELECEQVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEY--DEEVLVEQFIKG-RELEVS 199 (315)
T ss_pred ------ccccchhhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc--CCcEEEEcCCCC-EEEEEE
Confidence 01111222 2344679999999999999999999999999999999887643 468999999975 899999
Q ss_pred EEEcCCCCE-EEeeccccccccccceE-----EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 287 LLCDQYGNV-AALHSRDCSVQRRHQKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 287 vl~D~~G~v-i~l~~RdcSvqrr~qKi-----ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
+++++.+.. +....+.+.+.....|. ....|+. ++++..++|++.+.++++++|+.|.++|||++++ +|++|
T Consensus 200 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g~~~ 277 (315)
T TIGR01205 200 ILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAP-LDEELEEKIKELALKAYKALGCRGLARVDFFLDE-EGEIY 277 (315)
T ss_pred EECCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeC-CCCEE
Confidence 998654322 22222211111111121 1124554 7889999999999999999999999999999994 56899
Q ss_pred EEEeccCCCCCc----ceehhhhcCCHHHHHHHHH
Q 000086 361 FLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 361 fLEINpRlqgeh----pvtE~vtGVDL~~~qL~iA 391 (2304)
|+|+|||++... |..-...|+|+.++...+.
T Consensus 278 viEvN~~pg~~~~s~~~~~~~~~G~~~~~l~~~ii 312 (315)
T TIGR01205 278 LNEINTIPGMTAISLFPKAAAAAGIEFSQLVERIL 312 (315)
T ss_pred EEEeeCCCCCCCccHHHHHHHHcCCCHHHHHHHHH
Confidence 999999986542 2233456888887776553
No 72
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.92 E-value=1.5e-23 Score=259.71 Aligned_cols=230 Identities=21% Similarity=0.242 Sum_probs=180.2
Q ss_pred cCCCEEEeC-CCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~pG-~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
.++|.|+|. +|...|+..++..|+..|++++|+++.+...+.||..++++++++|||+|+|..
T Consensus 89 ~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~---------------- 152 (343)
T PRK14568 89 IRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWT---------------- 152 (343)
T ss_pred ccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEE----------------
Confidence 578999997 677889999999999999999999999999999999999999999999999875
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl 288 (2304)
+.+.++. ..+.++||+||||..||||+||.+|+|.+||.++++.+... +..++||+|++| +|+++.++
T Consensus 153 -------~~~~~~~--~~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~--~~~vlVEe~I~G-~E~sv~vl 220 (343)
T PRK14568 153 -------VTADERP--DAATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY--DSKVLIEEAVVG-SEVGCAVL 220 (343)
T ss_pred -------EECCchh--hhhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCcEEEECCcCC-EEEEEEEE
Confidence 2222221 13468999999999999999999999999999999887643 468999999986 89999999
Q ss_pred EcCCCCEEEeecccc---ccccccceEE---------EeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccC
Q 000086 289 CDQYGNVAALHSRDC---SVQRRHQKII---------EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2304)
Q Consensus 289 ~D~~G~vi~l~~Rdc---Svqrr~qKii---------eeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~ 356 (2304)
+++.+..+.-..+-+ .+.+.++|.. ...|+. ++++..+++.+.|.++++++|+.|.++|||++++ +
T Consensus 221 ~~~~~~~~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~-~ 298 (343)
T PRK14568 221 GNGADLVVGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPAD-ISAEERSRVQETAKAIYRALGCRGLARVDMFLQE-D 298 (343)
T ss_pred cCCCCcceecceEEecCCCccchhhhhccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeC-C
Confidence 875432221111100 1223333321 124665 7899999999999999999999999999999984 7
Q ss_pred CcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHH
Q 000086 357 GEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVA 389 (2304)
Q Consensus 357 g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~ 389 (2304)
|.+||+|||++++... |..-.+.|+++.++.-+
T Consensus 299 g~~~llEINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~ 335 (343)
T PRK14568 299 GTVVLNEVNTLPGFTSYSRYPRMMAAAGIPLAELIDR 335 (343)
T ss_pred CCEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHH
Confidence 8899999999998642 22223467776665544
No 73
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=99.91 E-value=2.9e-25 Score=228.71 Aligned_cols=107 Identities=31% Similarity=0.531 Sum_probs=102.9
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
+||||||||.++|.|++|+|..+.+|++++||++.++.+|..|+++|||++||||+||.||++|+++|.+||+++.|+|
T Consensus 1 E~Ri~AEdP~~~F~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v~~~yDsmiaKliv~g~~R~~Ai~~l~~AL~e~~I~G- 79 (107)
T PF02785_consen 1 EARIYAEDPANGFLPSPGRITRYSPPGGPGVRVDTGVYSGYEVSPYYDSMIAKLIVHGPDREEAIARLRRALAETVIEG- 79 (107)
T ss_dssp EEEEESBETTTTTEBSSEEESEEE-SSSTTEEEEESESTTCEE-SSSSSEEEEEEEEESSHHHHHHHHHHHHHHHEEES-
T ss_pred CcEEeecCCCCCCcCCcEEEeEEECCCCCCeeEEecCccccccCCCchhhhhhheeeccchHHHHHHHHhhcceEEEEC-
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLD 550 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld 550 (2304)
++||++||++||++|+|++|+++|+|||
T Consensus 80 v~TNi~fl~~ll~~~~f~~g~~~T~~le 107 (107)
T PF02785_consen 80 VKTNIPFLRALLAHPEFRSGTYDTGFLE 107 (107)
T ss_dssp SSHSHHHHHHHHTSHHHHTT-SSTTHHH
T ss_pred ccCCHHHHHHHhCCcccccCCCeeeccC
Confidence 9999999999999999999999999997
No 74
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.91 E-value=4.2e-23 Score=256.03 Aligned_cols=238 Identities=19% Similarity=0.246 Sum_probs=183.0
Q ss_pred cCCCEEEeC-CCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~pG-~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
.++|.++++ .|...|+..++..|+..|++++|++..++..+.||..++++++++|||+|+|.. ++.
T Consensus 87 ~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~-------------~~~ 153 (347)
T PRK14572 87 LDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFE-------------LEK 153 (347)
T ss_pred cCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEE-------------EEc
Confidence 467888887 367779999999999999999999999999999999999999999999999865 000
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl 288 (2304)
.....+.++..+..+++|||+||||..||+|+||.+|+|.+||..+++.+... +.+++||+|++| +|++|.++
T Consensus 154 ----~~~~~~~~~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~--~~~vlVEefI~G-~E~sv~vi 226 (347)
T PRK14572 154 ----LKYLNSPRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES--DSKVMSQSFLSG-TEVSCGVL 226 (347)
T ss_pred ----cccccChHHHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCCEEEEcCccc-EEEEEEEE
Confidence 00022444555556779999999999999999999999999999999987632 468999999976 99999999
Q ss_pred EcCC-C--CEEEeecccccc-------cccc--ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccC
Q 000086 289 CDQY-G--NVAALHSRDCSV-------QRRH--QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2304)
Q Consensus 289 ~D~~-G--~vi~l~~RdcSv-------qrr~--qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~ 356 (2304)
.+.. | +.+.+....... ..++ .......|+. +++++.+++.+.|.++++++|+.|.++|||+++ +
T Consensus 227 ~~~~~g~~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~--~ 303 (347)
T PRK14572 227 ERYRGGKRNPIALPATEIVPGGEFFDFESKYKQGGSEEITPAR-ISDQEMKRVQELAIRAHESLGCKGYSRTDFIIV--D 303 (347)
T ss_pred eCccCCCCCceecccEEEecCCCccCHHHccCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEE--C
Confidence 7532 2 333333222110 0001 0112335765 789999999999999999999999999999998 6
Q ss_pred CcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHH
Q 000086 357 GEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 357 g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~i 390 (2304)
|++||+|+|++++... |..-...|+++.++.-++
T Consensus 304 ~~~~vlEiNt~PG~t~~S~~p~~~~~~G~~~~~l~~~i 341 (347)
T PRK14572 304 GEPHILETNTLPGMTETSLIPQQAKAAGINMEEVFTDL 341 (347)
T ss_pred CcEEEEeeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 8899999999997542 333335688777665543
No 75
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=99.91 E-value=4.2e-24 Score=270.58 Aligned_cols=156 Identities=18% Similarity=0.183 Sum_probs=136.7
Q ss_pred ccccCCCceecccCCC----CeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHH
Q 000086 1916 GIFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1991 (2304)
Q Consensus 1916 gl~D~gsF~E~~~~~a----~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~ 1991 (2304)
.+|| +|+|+.++|+ +++|||+|||+|+||+|||++++.. ..++ +.+.+|+++|.+++|++|
T Consensus 169 ~i~d--df~EL~Gdr~~~dD~aIVtGlGRIdGrpV~VIAndkg~~------------tke~-~~rnfG~~~peGyRKAlR 233 (762)
T PLN03229 169 NITD--KFVELHGDRAGYDDPAIVTGIGTIDGKRYMFIGHQKGRN------------TKEN-IMRNFGMPTPHGYRKALR 233 (762)
T ss_pred HHHH--HHHHhcCcccCCCCCCeEEEEEEECCEEEEEEEecCCcc------------cccc-ccccCCCCCHHHHHHHHH
Confidence 3665 5999999987 8999999999999999999976421 2233 344578999999999999
Q ss_pred HHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCC-chhhhhcccccCCcccee
Q 000086 1992 ALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELR-GGAWVVVDSRINSDHIEM 2070 (2304)
Q Consensus 1992 ~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~-GGa~vv~~~~i~~d~~~~ 2070 (2304)
++++|++|++|||+|+||+||.+|...|..|+.+++++.+.+++..+||+|++|+ |+++ ||||++.. +|+ +
T Consensus 234 lmkLAekfgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVVi--GeggSGGAlA~g~----aD~--V 305 (762)
T PLN03229 234 MMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVI--GEGGSGGALAIGC----ANK--L 305 (762)
T ss_pred HHHHHHHcCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEe--CCcchHHHHHhhc----CCE--E
Confidence 9999999999999999999999999999999999999999999999999999999 5554 56665544 477 9
Q ss_pred ecccCcEEEeeCccchhhhhcchh
Q 000086 2071 YADRTAKGNVLEPEGMIEIKFRTK 2094 (2304)
Q Consensus 2071 ~A~p~A~~gvl~Peg~v~i~~r~~ 2094 (2304)
+|||+|.++|++|||++.|.||+.
T Consensus 306 lMle~A~~sVisPEgaAsILwkd~ 329 (762)
T PLN03229 306 LMLENAVFYVASPEACAAILWKSA 329 (762)
T ss_pred EEecCCeEEecCHHHHHHHHhcCc
Confidence 999999999999999999999976
No 76
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.91 E-value=4.8e-23 Score=256.07 Aligned_cols=240 Identities=17% Similarity=0.214 Sum_probs=185.0
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
.++|.|+|.. |...|+..++..|+..||+++|++..+...+.||..++++++++|||||||.. +.
T Consensus 86 ~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~----~~---------- 151 (364)
T PRK14570 86 LEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIG----FR---------- 151 (364)
T ss_pred cCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEE----Ee----------
Confidence 4689999874 66779999999999999999999999999999999999999999999999865 00
Q ss_pred ccccccccCCHHHHHHH-hhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 209 DVYRQACVYTTEEAIAS-CQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~-a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
......+.+++.+. .+.+|||+||||..+|+|.||.+|++.+||.++++.+... +..++||+|++| +|++|.+
T Consensus 152 ---~~~~~~~~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~--~~~vlVEefI~G-rEi~v~V 225 (364)
T PRK14570 152 ---KYDYFLDKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY--DLTVVIEKFIEA-REIECSV 225 (364)
T ss_pred ---ccccccchHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEECCcCC-EEEEEEE
Confidence 00012244555443 4679999999999999999999999999999999988743 467999999985 9999999
Q ss_pred EEcCCCCEEEeeccc-----c-cccc-----ccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccC
Q 000086 288 LCDQYGNVAALHSRD-----C-SVQR-----RHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2304)
Q Consensus 288 l~D~~G~vi~l~~Rd-----c-Svqr-----r~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~ 356 (2304)
+++....+....+.. + +... ..+......|+. +++++.+++++.|.++.++||++|.++|||++++++
T Consensus 226 lg~~~~~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~-l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~ 304 (364)
T PRK14570 226 IGNEQIKIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAH-LDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDT 304 (364)
T ss_pred ECCCCceEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCC
Confidence 987643333322211 0 0000 011223346776 899999999999999999999999999999998545
Q ss_pred CcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHH
Q 000086 357 GEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 357 g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~i 390 (2304)
|++||+|+||+++-.. |..-...|+++.++.-++
T Consensus 305 g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~l 342 (364)
T PRK14570 305 GLIYLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNL 342 (364)
T ss_pred CcEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 7899999999998542 323334688777665443
No 77
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=99.91 E-value=1.3e-24 Score=224.23 Aligned_cols=107 Identities=32% Similarity=0.610 Sum_probs=105.3
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
+||||||||.++|.|++|+|+.+++|++++||++.++..|..|+++||||+||||+||+||++|+++|.+||+++.|+|
T Consensus 1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~g~gvR~Dt~~~~G~~v~~~yDsmlAKliv~g~~R~~A~~rl~~aL~e~~i~G- 79 (107)
T smart00878 1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDSGVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFRIEG- 79 (107)
T ss_pred CeEEEeeCCCCCcccCCCEEeEEEcCCCCCEEEEccCcCCCCcCcchhhhceEEEEEcCCHHHHHHHHHHHHHhCEEEC-
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLD 550 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld 550 (2304)
++||++||++||.+|+|++|+++|+|||
T Consensus 80 v~TN~~~l~~ll~~~~f~~g~~~T~~l~ 107 (107)
T smart00878 80 VKTNIPFLRALLRHPDFRAGDVDTGFLE 107 (107)
T ss_pred ccCCHHHHHHHhcCHhhhcCcccccccC
Confidence 9999999999999999999999999996
No 78
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=99.90 E-value=7.7e-23 Score=244.45 Aligned_cols=197 Identities=20% Similarity=0.265 Sum_probs=157.0
Q ss_pred ccccC----CCCChHHHhhcccCCCCCcccccccCCCceeccc---------------------------CCCCeEEEEE
Q 000086 1890 EYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------------------GWARTVVTGR 1938 (2304)
Q Consensus 1890 ~~~P~----~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~---------------------------~~a~~vVtG~ 1938 (2304)
.++|. ....+|++|+. |+|+|||.|+.. +.+.+||||+
T Consensus 47 ~vc~~c~~h~rl~areRi~~-----------L~D~gsF~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~ 115 (292)
T PRK05654 47 NVCPKCGHHMRISARERLDL-----------LLDEGSFVELDAELEPKDPLKFRDSKKYKDRLKAAQKKTGLKDAVVTGK 115 (292)
T ss_pred CCCCCCCCCeeCCHHHHHHH-----------HccCCccEEecCccccCCcccCCcccccchHHHHhhhccCCCCcEEEEE
Confidence 35665 55688899987 899999999854 1257999999
Q ss_pred EEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhh
Q 000086 1939 ARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRD 2018 (2304)
Q Consensus 1939 arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~ 2018 (2304)
|+|+|+||+|+|+|++++ ||+++..+++|++|++++|+++++|||+|+|++|+ .
T Consensus 116 g~I~G~~V~v~a~D~~f~---------------------gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~dsgGa-----r 169 (292)
T PRK05654 116 GTIEGMPVVLAVMDFSFM---------------------GGSMGSVVGEKIVRAVERAIEEKCPLVIFSASGGA-----R 169 (292)
T ss_pred EEECCEEEEEEEEecccc---------------------cCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCc-----c
Confidence 999999999999988766 99999999999999999999999999999999996 4
Q ss_pred hhhhHHH--HHHHH---HHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcch
Q 000086 2019 LFEGILQ--AGSTI---VENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRT 2093 (2304)
Q Consensus 2019 e~~gilk--~ga~i---v~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~ 2093 (2304)
|++|++. .++++ +..++++++|+|++|+ |.++||+...+. ...|+ ++|||+|++|+++|+.+..
T Consensus 170 mqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~--gpt~GG~aas~a--~~~D~--iia~p~A~ig~aGprvie~----- 238 (292)
T PRK05654 170 MQEGLLSLMQMAKTSAALKRLSEAGLPYISVLT--DPTTGGVSASFA--MLGDI--IIAEPKALIGFAGPRVIEQ----- 238 (292)
T ss_pred hhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEe--CCCchHHHHHHH--HcCCE--EEEecCcEEEecCHHHHHh-----
Confidence 6777764 44554 4457778899999999 677888554443 35688 9999999999999954411
Q ss_pred hhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCc
Q 000086 2094 KELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2173 (2304)
Q Consensus 2094 ~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~ 2173 (2304)
++ .+++ .+.+.+|..+.++|+||.||+|
T Consensus 239 -----~~-----------------------------~e~l------------------pe~~~~ae~~~~~G~vD~Vv~~ 266 (292)
T PRK05654 239 -----TV-----------------------------REKL------------------PEGFQRAEFLLEHGAIDMIVHR 266 (292)
T ss_pred -----hh-----------------------------hhhh------------------hhhhcCHHHHHhCCCCcEEECH
Confidence 00 0000 0113467788899999999999
Q ss_pred cchHHHHHHHHHH
Q 000086 2174 DKSRSFFCRRLRR 2186 (2304)
Q Consensus 2174 ~~tR~~~~~~L~r 2186 (2304)
+++|..|...|+.
T Consensus 267 ~e~r~~l~~~L~~ 279 (292)
T PRK05654 267 RELRDTLASLLAL 279 (292)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988875
No 79
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.90 E-value=7.5e-23 Score=256.25 Aligned_cols=326 Identities=18% Similarity=0.282 Sum_probs=268.2
Q ss_pred ccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCC
Q 000086 48 IHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNN 116 (2304)
Q Consensus 48 ~~kILIan~G~-----------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~s 116 (2304)
.+-++++|.|. -|+.++|++|++|++|+..+.+-++| .| | ..+||+.|.-.
T Consensus 918 ~~g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETV--ST--D-------yDecdrLYFee------- 979 (1435)
T KOG0370|consen 918 EHGVMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETV--ST--D-------YDECDRLYFEE------- 979 (1435)
T ss_pred CCceEEEcccceecccceeechhhhhHHHHHHHcCCceEEEecCcccc--cC--c-------hHHHhhHhHhh-------
Confidence 35689999886 69999999999999998544444444 22 2 45788866531
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCC-cCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCc
Q 000086 117 YANVQLIVEMAEMTRVDAVWPGWG-HASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2304)
Q Consensus 117 Y~dvd~Ii~iA~~~~vDaV~pG~G-~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~ 195 (2304)
.+.+.++++-+.+...+|+...| .+..| ++-.|.+.|....|.+|+.+....|+..+.+++.+.||..|+|..
T Consensus 980 -is~E~vmDiYe~E~~~G~iis~GGQ~pnN--iA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wke--- 1053 (1435)
T KOG0370|consen 980 -ISYERVMDIYELENSEGIIISVGGQLPNN--IALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKE--- 1053 (1435)
T ss_pred -hhhhhhhhhhhhccCCceEEEecCcCcch--hhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhhhh---
Confidence 34699999999999988887665 45555 666788899999999999999999999999999999999999997
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000086 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2304)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEe 275 (2304)
+++.+|+.++|+++||||+|.|+.--.|.-|-++.+++||+..++++..-++..|+.|-+
T Consensus 1054 --------------------lt~~~eA~~F~~~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs~dhPVVisK 1113 (1435)
T KOG0370|consen 1054 --------------------LTSLEEAKKFAEKVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVSPDHPVVISK 1113 (1435)
T ss_pred --------------------hccHHHHHHHHHhcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcCCCCCEEhHH
Confidence 789999999999999999999999999999999999999999999999888999999999
Q ss_pred eccccceeeEEEEEcCCCCEEEeecccccccc--ccc-eEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEE
Q 000086 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQR--RHQ-KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2304)
Q Consensus 276 yI~g~reieVqvl~D~~G~vi~l~~RdcSvqr--r~q-KiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~ 352 (2304)
|+++++|++|+.++.. |+++....-+ .+.. -|. ...-..|+..++++..+++.+++.++++++...|+++++|+.
T Consensus 1114 fie~AkEidvDAVa~~-G~~~~haiSE-HvEnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~ 1191 (1435)
T KOG0370|consen 1114 FIEGAKEIDVDAVASD-GKVLVHAISE-HVENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIA 1191 (1435)
T ss_pred hhcccceechhhhccC-CeEEEEehhh-hhhcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEe
Confidence 9999999999988753 6665431111 0000 000 000123788899999999999999999999999999999999
Q ss_pred EccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCch--------------hhhhcccccCCCcccccc
Q 000086 353 SMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP--------------EIRRFYGMEHGGVYDAWR 418 (2304)
Q Consensus 353 d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ip--------------dir~~yg~~~~~~~~~~~ 418 (2304)
. +++..+||+|-|.+.+.|+...+.|+|+++...+..||.|++..+ .+.++.|.||. ++.+|.
T Consensus 1192 k--~n~lkVIECN~RaSRSFPFvSKtlgvdfi~~At~~i~g~~~~~~~~~~~dyV~vKvPqFSf~RLagADp~-LgvEMa 1268 (1435)
T KOG0370|consen 1192 K--DNELKVIECNVRASRSFPFVSKTLGVDFIALATRAIMGVPVPPDLLLHPDYVAVKVPQFSFSRLAGADPV-LGVEMA 1268 (1435)
T ss_pred c--CCeEEEEEeeeeeeccccceehhcCchHHHHHHHHHhCCCCCCccccCCCeEEEEccccccccccCCCce-eeeEec
Confidence 8 789999999999999999999999999999999999999876432 25566666665 356666
Q ss_pred cccc
Q 000086 419 KTSV 422 (2304)
Q Consensus 419 ~~~~ 422 (2304)
+||+
T Consensus 1269 STGE 1272 (1435)
T KOG0370|consen 1269 STGE 1272 (1435)
T ss_pred cccc
Confidence 6664
No 80
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.89 E-value=2.5e-21 Score=235.62 Aligned_cols=223 Identities=20% Similarity=0.241 Sum_probs=171.7
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
.++|.||+.. |...|+..++..|+..|++++|+++.++..+.||..++++++ +|||+|+|..
T Consensus 52 ~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~~---------------- 114 (299)
T PRK14571 52 KSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFVE---------------- 114 (299)
T ss_pred cCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEEE----------------
Confidence 4679999874 445578889999999999999999999999999999999998 5899999765
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl 288 (2304)
+.+.. .+..+|||+||||..|+||+||.+|+|.+||.+++++.... ..+++||+|++| +|++|.++
T Consensus 115 -------~~~~~----~~~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~--~~~vlVEeyI~G-~E~sv~vl 180 (299)
T PRK14571 115 -------IKEFM----KTSPLGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPR--YGSVIVQEYIPG-REMTVSIL 180 (299)
T ss_pred -------Eechh----hhhhcCCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhh--CCcEEEEccccc-eEEEEEEE
Confidence 22211 23568999999999999999999999999999998876532 357999999986 89999999
Q ss_pred EcCCCC-EEEeecccccccccc----ceE-----EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCc
Q 000086 289 CDQYGN-VAALHSRDCSVQRRH----QKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2304)
Q Consensus 289 ~D~~G~-vi~l~~RdcSvqrr~----qKi-----ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~ 358 (2304)
+++.+. ++.+... ....++ .|. ....|+. ++++..++|.+.+.++++++|+.|.++|||+++ +|+
T Consensus 181 ~~~~~~~vl~~~e~--~~~~~~~~~~~k~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~--~~~ 255 (299)
T PRK14571 181 ETEKGFEVLPILEL--RPKRRFYDYVAKYTKGETEFILPAP-LNPEEERLVKETALKAFVEAGCRGFGRVDGIFS--DGR 255 (299)
T ss_pred cCCCCeeeeceEEE--ecCCCccccccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE--CCc
Confidence 986433 2222111 011100 011 1123654 788999999999999999999999999999998 688
Q ss_pred EEEEEeccCCCCCc----ceehhhhcCCHHHHHH
Q 000086 359 YYFLELNPRLQVEH----PVTEWIAEINLPAAQV 388 (2304)
Q Consensus 359 ~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL 388 (2304)
+||+|+||+++... |..-...|+++.++.-
T Consensus 256 ~~viEiN~~Pg~~~~s~~~~~~~~~G~~~~~li~ 289 (299)
T PRK14571 256 FYFLEINTVPGLTELSDLPASAKAGGIEFEELVD 289 (299)
T ss_pred EEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHH
Confidence 99999999998642 2122246777776443
No 81
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.89 E-value=1.9e-21 Score=264.82 Aligned_cols=240 Identities=19% Similarity=0.249 Sum_probs=186.3
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
.++|.|+|.. |...|+..++..|+..||+++|++..+...+.||..+|++++++|||+|||.. +..
T Consensus 525 ~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~-------------~~~ 591 (809)
T PRK14573 525 AKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQP-------------LTL 591 (809)
T ss_pred ccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE-------------Eec
Confidence 4689999975 66789999999999999999999999999999999999999999999999875 000
Q ss_pred ccccccccCCHH-HHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 209 DVYRQACVYTTE-EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 209 ~~~~~~~V~s~e-ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
.-+ ..+.+ ...+..+++|||+||||..+|+|+||.+|++.+||.++++.+... +.+++||+|+.+++|++|.+
T Consensus 592 ~~~----~~~~~~~~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe~i~~grEi~v~v 665 (809)
T PRK14573 592 AGW----KREPELCLAHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY--DTDVFVEESRLGSREIEVSC 665 (809)
T ss_pred hhc----ccChHHHHHHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCcEEEEeccCCCEEEEEEE
Confidence 000 01222 234566789999999999999999999999999999999988643 46899999998889999999
Q ss_pred EEcCCCCEEE--eeccccc--cccccceE-------EE-eCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEcc
Q 000086 288 LCDQYGNVAA--LHSRDCS--VQRRHQKI-------IE-EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2304)
Q Consensus 288 l~D~~G~vi~--l~~RdcS--vqrr~qKi-------ie-eaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~ 355 (2304)
++++.+..+. ...+.+. +.....|. .+ ..|+. +++++.+++++.|.++.+++|++|.++|||++++
T Consensus 666 l~~~~~~~~~~~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~- 743 (809)
T PRK14573 666 LGDGSSAYVIAGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLD-LSKESQEQVLELAERIYRLLQGKGSCRIDFFLDE- 743 (809)
T ss_pred EeCCCCceEeccceEEccCCCeeCchhcccCCCCCceEEecCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcC-
Confidence 9987664322 1122221 11111111 12 23554 8999999999999999999999999999999984
Q ss_pred CCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHH
Q 000086 356 TGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 356 ~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~i 390 (2304)
+|++||+|+|||++-.. |..-...|+++.++.-++
T Consensus 744 ~g~~yv~EiNt~PG~t~~s~~p~~~~~~G~~~~~li~~i 782 (809)
T PRK14573 744 EGNFWLSEMNPIPGMTEASPFLTAFVRKGWTYEQIVHQL 782 (809)
T ss_pred CCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 68899999999998642 333345688777665544
No 82
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.88 E-value=2.4e-21 Score=224.84 Aligned_cols=345 Identities=20% Similarity=0.205 Sum_probs=235.8
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC---CccCHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN---NYANVQLIV 124 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~---sY~dvd~Ii 124 (2304)
+-|||++ |..-..+..||.++||+|+ .|..+.+.|.. -.|+.++..-.+..-. +| |...|+
T Consensus 11 ~~kiLvi--GvntR~vveSA~klGf~V~-------sv~~y~~~Dl~------~~a~~~l~~r~~~~~~rfe~~-de~~li 74 (389)
T COG2232 11 SCKILVI--GVNTRPVVESASKLGFEVY-------SVQYYDPADLP------GDAISYLRERPGELLGRFENL-DEQKLI 74 (389)
T ss_pred cceEEEE--eecchHhHHHHHhcCeEEE-------EeEeecccccc------cccceEEEecChhhcCcccCC-CHHHHH
Confidence 4579998 5667788999999999996 34446655544 2455555433222112 33 678899
Q ss_pred HHHHHc--CCCE-EEeCCCcCCCCCchHHHHHHCCCeEECCCHH-HHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCC
Q 000086 125 EMAEMT--RVDA-VWPGWGHASEIPELPDTLSTKGIIFLGPPAT-SMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPE 200 (2304)
Q Consensus 125 ~iA~~~--~vDa-V~pG~G~~SEn~~la~~l~~~GI~fiGPs~e-am~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~ 200 (2304)
+++.+. .+|+ ++|+.|+...+.. -+.+....|.+++ ....+.+|..+...+..+|.|.|+...
T Consensus 75 ~~~~~~~~dvD~~ii~~sg~e~l~~~-----g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~-------- 141 (389)
T COG2232 75 EAAEDLAEDVDAPIIPFSGFEALRTS-----GELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKK-------- 141 (389)
T ss_pred HHHHhhhhhcceeeeecccccccccc-----CccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhh--------
Confidence 988875 4888 8888787665422 2235567788888 889999999999999999999998432
Q ss_pred CcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccc
Q 000086 201 SCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQS 280 (2304)
Q Consensus 201 ~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~ 280 (2304)
.+ ....--+|+|+||+.|+||. +.++.=.++.. -.++++|+|++|
T Consensus 142 ------------------~e----~~~~gekt~IlKPv~GaGG~-~el~~~~Ee~~-----------~~~~i~Qefi~G- 186 (389)
T COG2232 142 ------------------IE----PLEEGEKTLILKPVSGAGGL-VELVKFDEEDP-----------PPGFIFQEFIEG- 186 (389)
T ss_pred ------------------hh----hhhhcceeeEEeeccCCCce-eeecccccccC-----------CcceehhhhcCC-
Confidence 11 11122368999999999996 33333222211 258999999987
Q ss_pred ceeeEEEEEcCCCCEEEeeccccccccccceEEEe---------CCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEE
Q 000086 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEE---------GPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYL 351 (2304)
Q Consensus 281 reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiiee---------aPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl 351 (2304)
++++|.+++++. .++.+. |+-|--.-+-.+. .|.+ .+..+++++.|..+...+|+.|...|||+
T Consensus 187 ~p~Svs~is~g~-~a~~la---~N~QiI~~~~~~~~~f~Y~GNlTP~~---~~~~ee~e~la~elV~~lgL~GsnGVDfv 259 (389)
T COG2232 187 RPVSVSFISNGS-DALTLA---VNDQIIDGLRGEYSQFVYKGNLTPFP---YEEVEEAERLAEELVEELGLVGSNGVDFV 259 (389)
T ss_pred ceeEEEEEecCc-ceEEEE---EeeeeecccccccccceeccCcCCCc---chhhHHHHHHHHHHHHHhccccccccceE
Confidence 899999999975 333332 1111110000111 2433 23338999999999999999999999999
Q ss_pred EEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccc
Q 000086 352 YSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQ 431 (2304)
Q Consensus 352 ~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~ 431 (2304)
++ +.++|+||+|||+||+..+.|+++|+|++++++++.+|.-.
T Consensus 260 l~--d~gpyViEVNPR~qGt~e~iE~s~giNl~~lHi~af~G~Lp----------------------------------- 302 (389)
T COG2232 260 LN--DKGPYVIEVNPRIQGTLECIERSSGINLFRLHIQAFDGELP----------------------------------- 302 (389)
T ss_pred ee--cCCcEEEEecCcccchHHHHHHhcCCCHHHHHHHHhcCcCc-----------------------------------
Confidence 98 78899999999999999999999999999999999999743
Q ss_pred cCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHH
Q 000086 432 AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMV 511 (2304)
Q Consensus 432 ~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~ 511 (2304)
+++.|+++++...++|.+ .-+.| .....|.+---.+|..+ +--+| +..|||.+.++++|..-+.
T Consensus 303 -Er~kpr~~a~krILyap~--~v~v~-----------~l~~~~~~DiP~~Gtvi-ekgeP-l~sviA~~nt~~~a~~~~e 366 (389)
T COG2232 303 -ERPKPRGYACKRILYAPR--TVRVP-----------ILKLSWTHDIPRPGTVI-EKGEP-LCSVIASSNTRSGAESMAE 366 (389)
T ss_pred -CCCCcceeEEeEEEeccc--eeecc-----------cccccccccCCCCCccc-CCCCc-eeeeeeccCCHHHHHHHHH
Confidence 245667888887777733 21111 11122222111222222 22222 7889999999999999777
Q ss_pred Hhhcc
Q 000086 512 LGLKE 516 (2304)
Q Consensus 512 ~AL~e 516 (2304)
+.++.
T Consensus 367 r~~er 371 (389)
T COG2232 367 RLAER 371 (389)
T ss_pred HHHHH
Confidence 76654
No 83
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=99.88 E-value=6.8e-22 Score=235.37 Aligned_cols=200 Identities=20% Similarity=0.228 Sum_probs=156.7
Q ss_pred CccccC----CCCChHHHhhcccCCCCCcccccccCCCceeccc---------------------------CCCCeEEEE
Q 000086 1889 VEYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------------------GWARTVVTG 1937 (2304)
Q Consensus 1889 ~~~~P~----~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~---------------------------~~a~~vVtG 1937 (2304)
..++|. ..-.+|++|+. |||+|||.|+.. +.+.++|||
T Consensus 45 ~~vc~~c~~h~rl~areRi~~-----------L~D~gsF~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG 113 (285)
T TIGR00515 45 LEVCPKCDHHMRMDARERIES-----------LLDEGSFEEFNSHLEPKDPLKFKDSKKYKDRIAKAQKETGEKDAVVTG 113 (285)
T ss_pred CCCCCCCCCcCcCCHHHHHHH-----------ceeCCeeEEeCCccccCccccCCcccchhHHHHHHhhccCCCCcEEEE
Confidence 345665 56789999997 899999999842 125799999
Q ss_pred EEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchh
Q 000086 1938 RARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQR 2017 (2304)
Q Consensus 1938 ~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~ 2017 (2304)
+|+|+|+||+|+|+|++++ ||+++..+++|++|+++.|.++++|||+|+|++|+. .
T Consensus 114 ~g~I~G~~V~v~a~D~~f~---------------------gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dSgGaR---m 169 (285)
T TIGR00515 114 KGTLYGMPIVVAVFDFAFM---------------------GGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGAR---M 169 (285)
T ss_pred EEEECCEEEEEEEEecccc---------------------CCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcc---c
Confidence 9999999999999998876 999999999999999999999999999999999973 2
Q ss_pred hhhhhHHHHHHH---HHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchh
Q 000086 2018 DLFEGILQAGST---IVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTK 2094 (2304)
Q Consensus 2018 ~e~~gilk~ga~---iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~ 2094 (2304)
.|....+..+++ .+..+++.++|+|++++ |.++||+...+. ..+|+ ++|||+|++|+++|+-+ +
T Consensus 170 qEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~--gpt~GG~aas~a--~~~D~--iia~p~A~ig~aGprVi-e------ 236 (285)
T TIGR00515 170 QEALLSLMQMAKTSAALAKMSERGLPYISVLT--DPTTGGVSASFA--MLGDL--NIAEPKALIGFAGPRVI-E------ 236 (285)
T ss_pred ccchhHHHhHHHHHHHHHHHHcCCCCEEEEEe--CCcchHHHHHHH--hCCCE--EEEECCeEEEcCCHHHH-H------
Confidence 333334445666 44557778899999999 677887654442 24688 99999999999999631 0
Q ss_pred hHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCcc
Q 000086 2095 ELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD 2174 (2304)
Q Consensus 2095 ~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~ 2174 (2304)
.++ .+++ .+.+++|..+.++|.||.||+++
T Consensus 237 ---~ti-----------------------------~e~l------------------pe~~q~ae~~~~~G~vD~iv~~~ 266 (285)
T TIGR00515 237 ---QTV-----------------------------REKL------------------PEGFQTSEFLLEHGAIDMIVHRP 266 (285)
T ss_pred ---HHh-----------------------------cCcc------------------chhcCCHHHHHhCCCCcEEECcH
Confidence 000 0000 12245788899999999999999
Q ss_pred chHHHHHHHHHH
Q 000086 2175 KSRSFFCRRLRR 2186 (2304)
Q Consensus 2175 ~tR~~~~~~L~r 2186 (2304)
++|..++..|+.
T Consensus 267 ~~r~~l~~~L~~ 278 (285)
T TIGR00515 267 EMKKTLASLLAK 278 (285)
T ss_pred HHHHHHHHHHHH
Confidence 999999988874
No 84
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.86 E-value=1.1e-19 Score=221.19 Aligned_cols=352 Identities=18% Similarity=0.214 Sum_probs=250.8
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCCcCCCCCc---hHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCC
Q 000086 118 ANVQLIVEMAEMTRVDAVWPGWGHASEIPE---LPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSH 194 (2304)
Q Consensus 118 ~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~---la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~ 194 (2304)
.|.+++.++|+++++..|++| .|.|. +...|.+.||.++||+.+++.+.++|..+|.+|.++||||..|..
T Consensus 55 ~d~~ala~f~~e~~I~lVvvG----PE~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~-- 128 (788)
T KOG0237|consen 55 ADFEALASFCKEHNINLVVVG----PELPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKT-- 128 (788)
T ss_pred hhHHHHHHHHHHcceeEEEEC----CchhhhhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceeee--
Confidence 478999999999999999999 33332 236777889999999999999999999999999999999999876
Q ss_pred ccCCCCCcccccCcccccccccCCHHHHHHHhhccC-CcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCC
Q 000086 195 VKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGS 269 (2304)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~ 269 (2304)
+++.+++..+.+..+ .++|||+..-..||||.+..+.+|.-++.+.+... ..|.
T Consensus 129 ---------------------ft~~e~a~sfi~~~~~~~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~ 187 (788)
T KOG0237|consen 129 ---------------------FTDPEEAKSFIQSATDKALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGK 187 (788)
T ss_pred ---------------------eCCHHHHHHHHHhCCCcceEEeecccccCCceEeeccHHHHHHHHHHHHhhhhhccccc
Confidence 788899999999999 46999999999999999999999998888877532 2367
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEe------------CCCCCCCHHHHHHHHHHH-HHH
Q 000086 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEE------------GPITVAPLETVKKLEQAA-RRL 336 (2304)
Q Consensus 270 ~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiiee------------aPa~~l~~e~~~~m~e~A-~rl 336 (2304)
.++|||+++| .|+++-.|.|++ ++..+. ....|.++.+. +|+|.+++++.+.+.+.. .+.
T Consensus 188 tvViEE~LEG-eEvS~laftDG~-s~~~mp-----~aQDHKRl~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~T 260 (788)
T KOG0237|consen 188 TVVIEELLEG-EEVSFLAFTDGY-SVRPLP-----PAQDHKRLGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPT 260 (788)
T ss_pred eEehhhhcCc-ceEEEEEEecCc-ccccCC-----cccchhhhcCCCCCCCCCCccccccCCccCHHHHHHHHHHHhhHh
Confidence 8999999987 799999999986 333331 22345555542 588888888776654433 233
Q ss_pred HH-----HCCceeeeEEEEEEEccCCcEEEEEeccCCCC-CcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccC
Q 000086 337 AK-----CVNYVGAATVEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEH 410 (2304)
Q Consensus 337 ak-----alGy~Ga~tVEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~ 410 (2304)
.+ .+.|+|+...-++++ .++|.+||.|.|++- |..+.-....-||.+.++...-|. |.
T Consensus 261 v~Gm~~eg~~y~GVLfaGlMl~--k~~P~vLEfN~RFGDPEtQv~l~lLesDL~evi~a~~~~~-L~------------- 324 (788)
T KOG0237|consen 261 VDGMAEEGIPYVGVLFAGLMLT--KDGPKVLEFNVRFGDPETQVLLPLLESDLAEVILACCNGR-LD------------- 324 (788)
T ss_pred hhHHHhcCCceeeEEeeeeEEe--cCCccEEEEecccCCchhhhhHHHHHhHHHHHHHHHhhCC-cc-------------
Confidence 32 457789999999999 567999999999973 333333334459999988877775 22
Q ss_pred CCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEE---EeeeeCCcccc
Q 000086 411 GGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAY---FSVKSGGGIHE 487 (2304)
Q Consensus 411 ~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~---~~v~~G~~i~~ 487 (2304)
...|.|+ .....+.++++--|++...+|- .|+.+..+..++.++. .++.++. --
T Consensus 325 -----------~~~i~w~-----~~sa~~VV~as~gYP~sy~KG~-----~It~~~~~~~~~~rVFHAGTs~~ss~--vv 381 (788)
T KOG0237|consen 325 -----------TVDIVWS-----KKSAVTVVMASGGYPGSYTKGS-----IITGLPEADRPGTRVFHAGTSLDSSN--VV 381 (788)
T ss_pred -----------ccCcccc-----ccceEEEEEecCCCCCCCcCCc-----ccccCcccCCCcceEEeccccccccc--eE
Confidence 1233342 1223345555555555544431 2222222223333332 1122221 11
Q ss_pred cCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecccccCHHHHHHhcCccccccccccchh
Q 000086 488 FSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGW 548 (2304)
Q Consensus 488 ~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ 548 (2304)
...+++--|.+.+++-++|++.++.+++.+++.| .|.|+-+...+|..-..+|.-
T Consensus 382 TNGGRVLsVTA~~~~L~sA~e~Ayk~v~~I~Fsg------~~yRkDI~~ra~~~~~~st~s 436 (788)
T KOG0237|consen 382 TNGGRVLSVTATGDDLESAAETAYKAVQVISFSG------KFYRKDIAWRAFKNKDDSTPS 436 (788)
T ss_pred ecCceEEEEEecCchHHHHHHHHHHHheEEeecc------ccccchhhhhhcchhhcCCcc
Confidence 1234466689999999999999999999999999 456666666677765555543
No 85
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.85 E-value=9.9e-21 Score=212.54 Aligned_cols=178 Identities=23% Similarity=0.351 Sum_probs=131.1
Q ss_pred HhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEE
Q 000086 169 ALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRK 248 (2304)
Q Consensus 169 ~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~ 248 (2304)
++.||..++++++++|||+|++.. +.+.+++.+++..++||+||||..|+||+|+++
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~-----------------------~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~ 57 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRI-----------------------VDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFI 57 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEE-----------------------ECSHHHHHHHHHHSSSSEEEEESS-STTTT-EE
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEE-----------------------ECCHHHHHHHHHHcCCCEEEEcCccccCCCEEE
Confidence 478999999999999999999765 788999999999999999999999999999999
Q ss_pred ECCHHHHHHHHHHHHhhCC--CCcEEEEEeccccceeeEEEEEcCCCCEEEeecccccccccc--ceEEEeCCCCCCCHH
Q 000086 249 VHNDDEVRALFKQVQGEVP--GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH--QKIIEEGPITVAPLE 324 (2304)
Q Consensus 249 V~s~eEL~~a~~~~~~e~~--~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~--qKiieeaPa~~l~~e 324 (2304)
+++.+++..+++.+..... +.++++|+|++| .++++.++.+ .|.++.+...+...+... ..-...+.....+..
T Consensus 58 ~~~~~~l~~~~~~~~~~~~~~~~~~ivqe~i~g-~e~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (184)
T PF13535_consen 58 VHSPEELEAALAEIREDSPLGNGPVIVQEYIPG-DEYSVDGVVD-DGEVVFAGISRYVRQSPGHFSGGVPTGYSVPSEPP 135 (184)
T ss_dssp ESSHHHHHHHHHHHHHHHS-HSSSEEEEE---S-EEEEEEEEEE-TTEEEEEEEEEEEEEETCCCSSSEEEEEEES--CE
T ss_pred eCCHHHHHHHHHHHHHhcccCCccEEEEEeeee-eeEEEEEEEE-cceEEEEEEEEEecccccccccceeeeeecccccc
Confidence 9999999999999876654 578999999986 8999999988 688766543332221010 000111111112334
Q ss_pred HHHHHHHHHHHHHHHCCc-eeeeEEEEEEEccCCcEEEEEeccCCCCCc
Q 000086 325 TVKKLEQAARRLAKCVNY-VGAATVEYLYSMETGEYYFLELNPRLQVEH 372 (2304)
Q Consensus 325 ~~~~m~e~A~rlakalGy-~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh 372 (2304)
..+++.+.+.++++++|| .|.+++||++++ +|.+||+|+|||++|.+
T Consensus 136 ~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~-~g~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 136 LPEELRDLARKLLRALGYRNGFFHIDFIVDP-DGELYFIEINPRFGGGS 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHT--SEEEEEEEEEET-CCEEEEEEEESS--STT
T ss_pred cHHHHHHHHHHHHHHcCCceEEEEEEEEEeC-CCCEEEEEECccCCCCC
Confidence 458999999999999999 899999999995 47899999999999875
No 86
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.85 E-value=1e-19 Score=217.98 Aligned_cols=226 Identities=15% Similarity=0.200 Sum_probs=167.0
Q ss_pred CCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCccc
Q 000086 131 RVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2304)
Q Consensus 131 ~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~ 210 (2304)
.+|+|++...+......+++.++..|+++++ +++++..+.||..++++++++|||+|++..
T Consensus 48 ~~d~v~~r~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~------------------ 108 (277)
T TIGR00768 48 ELDVVIVRIVSMFRGLAVARYLESLGVPVIN-SSDAILNAGDKFLTSQLLAKAGLPQPRTGL------------------ 108 (277)
T ss_pred CCCEEEEechhHhhHHHHHHHHHHCCCeeeC-CHHHHHHHhhHHHHHHHHHHCCCCCCCEEE------------------
Confidence 4688877652222334577888889999885 589999999999999999999999999765
Q ss_pred ccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC-CCCcEEEEEeccccceeeEEEEE
Q 000086 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV-PGSPIFIMKVASQSRHLEVQLLC 289 (2304)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~-~~~~i~VEeyI~g~reieVqvl~ 289 (2304)
+.+.+++.++.++++||+|+||..|+||+|+.++++.+++..+++...... ...++++|+|+++....++.++.
T Consensus 109 -----~~~~~~~~~~~~~~~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v 183 (277)
T TIGR00768 109 -----AGSPEEALKLIEEIGFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFV 183 (277)
T ss_pred -----eCCHHHHHHHHHhcCCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEE
Confidence 567888888889999999999999999999999999999998887665432 12579999999864324444444
Q ss_pred cCCCCEEEeeccc--cccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccC
Q 000086 290 DQYGNVAALHSRD--CSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367 (2304)
Q Consensus 290 D~~G~vi~l~~Rd--cSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpR 367 (2304)
.+ |+++....|. .........-....|.. + .+++.+.|.++++++|+ |.+.|||++++ +|++||+|+|||
T Consensus 184 ~~-~~~~~~~~r~~~~~~~~n~~~g~~~~~~~-l----~~~~~~~a~~~~~~l~~-~~~~vD~~~~~-~g~~~viEiN~~ 255 (277)
T TIGR00768 184 VG-DEVIAAIYRITSGHWRTNLARGGKAEPCP-L----TEEIEELAIKAAKALGL-DVVGIDLLESE-DRGLLVNEVNPN 255 (277)
T ss_pred EC-CEEEEEEEEcCCCchhhhhhcCCeeeecC-C----CHHHHHHHHHHHHHhCC-CeEEEEEEEcC-CCCeEEEEEcCC
Confidence 32 4555544332 00000000000011222 2 24788899999999998 78899999984 678999999999
Q ss_pred CCCCcceehhhhcCCHHHHHHHH
Q 000086 368 LQVEHPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 368 lqgehpvtE~vtGVDL~~~qL~i 390 (2304)
++.. ..+..+|+|+++++++.
T Consensus 256 p~~~--~~~~~~g~~l~~~~~~~ 276 (277)
T TIGR00768 256 PEFK--NSVKTTGVNIAGKLLDY 276 (277)
T ss_pred cchh--hhHHHHCCCHHHHHHhh
Confidence 8743 45678999999998764
No 87
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.84 E-value=2e-21 Score=243.59 Aligned_cols=306 Identities=21% Similarity=0.322 Sum_probs=261.3
Q ss_pred CccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000086 47 PIHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2304)
Q Consensus 47 ~~~kILIan~G~-----------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~ 115 (2304)
.-+|+||+|.|. .+-+.|+++|+-|+.|+..+.+|-+| .| -..+||+.+.+|-
T Consensus 376 ~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtv--Qt---------s~~lAD~vyflpv----- 439 (1435)
T KOG0370|consen 376 EVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATV--QT---------SKGLADKVYFLPV----- 439 (1435)
T ss_pred cccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCccccc--cc---------ccccceEEEEeec-----
Confidence 357999999764 47789999999999998666666544 33 1238999999984
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCC-CCC--chHH--HHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCC
Q 000086 116 NYANVQLIVEMAEMTRVDAVWPGWGHAS-EIP--ELPD--TLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPW 190 (2304)
Q Consensus 116 sY~dvd~Ii~iA~~~~vDaV~pG~G~~S-En~--~la~--~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~ 190 (2304)
..+.+....+...+|++..++|... -|. ++-+ .+++.+....|.+.+++....|+..+...+++.+.++.|.
T Consensus 440 ---T~~~vt~vi~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s 516 (1435)
T KOG0370|consen 440 ---TPEYVTKVIKAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPS 516 (1435)
T ss_pred ---CHHHHHHHHHhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccch
Confidence 3566788889999999999987433 221 1223 4566789999999999999999999999999999999986
Q ss_pred CCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCc
Q 000086 191 SGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSP 270 (2304)
Q Consensus 191 s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~ 270 (2304)
.. +++.++++++++++|||||+.+...-||.|--.++|++||.+...++.+. ...
T Consensus 517 ~a-----------------------~~sie~al~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~--s~Q 571 (1435)
T KOG0370|consen 517 EA-----------------------VSTIEEALEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALAL--SPQ 571 (1435)
T ss_pred hh-----------------------HhHHHHHHHHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhcccc--Cce
Confidence 54 78999999999999999999999999999999999999999988887654 468
Q ss_pred EEEEEeccccceeeEEEEEcCCCCEEEeecccccccccc------ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCcee
Q 000086 271 IFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH------QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVG 344 (2304)
Q Consensus 271 i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~------qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~G 344 (2304)
++||+-+.|.+|+|.+++.|.++|++.+ |....-. -.-+-.+|+..++++.++.++..|.++.+.+|..|
T Consensus 572 ilvekSlkGwkevEyevvrDa~~nciTv----cnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvG 647 (1435)
T KOG0370|consen 572 ILVEKSLKGWKEVEYEVVRDAYDNCITV----CNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVG 647 (1435)
T ss_pred eeehhhhccccceEEEEEeccccchhhh----cCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcc
Confidence 9999999999999999999999999987 6443222 12344679999999999999999999999999999
Q ss_pred eeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCch
Q 000086 345 AATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP 400 (2304)
Q Consensus 345 a~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ip 400 (2304)
-++++|.++|.+-++++||+|+|++.+..+...+||..|......+++|+||+.+|
T Consensus 648 EcniQyaL~p~s~~y~IiEVNarLSrssaLASkaTgypLAy~aAKlalg~~lpe~~ 703 (1435)
T KOG0370|consen 648 ECNIQYALNPYSLEYRIIEVNARLSRSSALASKATGYPLAYTAAKLALGIPLPELK 703 (1435)
T ss_pred cccceeeecccceeEEEEEEEeEEeehhhhhccCccCcHHHHHHHHhcCcccccCC
Confidence 99999999998889999999999999999999999999999999999999998764
No 88
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=99.83 E-value=8.1e-21 Score=218.20 Aligned_cols=157 Identities=20% Similarity=0.286 Sum_probs=136.5
Q ss_pred ccccCCCceecccCC----CCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHH
Q 000086 1916 GIFDKDSFVETLEGW----ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1991 (2304)
Q Consensus 1916 gl~D~gsF~E~~~~~----a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~ 1991 (2304)
++||+ |+|+..+. .+++|.|+||++|+||.||..+.+. +..+++...+ |...|++.+|+.|
T Consensus 77 ~i~~d--f~eL~GDR~f~dD~Aivgglar~~G~pv~vIG~qKG~------------dtk~~~~rNF-Gm~~PeGyRKAlR 141 (317)
T COG0825 77 LLFTD--FVELHGDRAFADDPAIVGGLARFGGQPVVVIGHQKGR------------DTKEKLKRNF-GMPRPEGYRKALR 141 (317)
T ss_pred HHHhH--HHHhcCccccCcChhheeeeeeECCeeEEEEeeecCc------------cchhHHHhcC-CCCCchHHHHHHH
Confidence 36664 99998754 5799999999999999999998653 2344444454 6899999999999
Q ss_pred HHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceee
Q 000086 1992 ALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMY 2071 (2304)
Q Consensus 1992 ~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~ 2071 (2304)
.+++|++|++|||+|+||+|.-+|..+|..|+..++|+.+..++..+||+|++|. ||.++|..++++. .|. +|
T Consensus 142 lm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVI--GEGgSGGALAi~v---ad~--V~ 214 (317)
T COG0825 142 LMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVI--GEGGSGGALAIGV---ADR--VL 214 (317)
T ss_pred HHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEe--cCCCchhhHHhhH---HHH--HH
Confidence 9999999999999999999999999999999999999999999999999999999 7755555566665 365 89
Q ss_pred cccCcEEEeeCccchhhhhcchh
Q 000086 2072 ADRTAKGNVLEPEGMIEIKFRTK 2094 (2304)
Q Consensus 2072 A~p~A~~gvl~Peg~v~i~~r~~ 2094 (2304)
|..+|.++|++|||++.|.||+.
T Consensus 215 mle~s~ySVisPEG~AsILWkD~ 237 (317)
T COG0825 215 MLENSTYSVISPEGCASILWKDA 237 (317)
T ss_pred HHHhceeeecChhhhhhhhhcCh
Confidence 99999999999999999999976
No 89
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.83 E-value=1.1e-20 Score=252.99 Aligned_cols=312 Identities=21% Similarity=0.217 Sum_probs=222.2
Q ss_pred ccccCCCCCCCcccCCCcCCCccchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEE
Q 000086 8 SAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMA 87 (2304)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~va 87 (2304)
|.++|++.+|+++|.. ..+..+.-+-+|....-|.. .+..|+.++.++-+-
T Consensus 87 q~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~~~~~----------------- 137 (727)
T PRK14016 87 QNLAGMPVGFGRTRET---SEPGVYQVVFEYKEEEVGRE---------ALELAVDLVNAAIND----------------- 137 (727)
T ss_pred HHHhCCCcceeEEEEc---CCCCEEEEEEEeCCHHHHHH---------HHHHHHHHHHHHhhC-----------------
Confidence 5678999999998663 12112222222222222222 245666666666532
Q ss_pred eccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCE--------EEeCCCcCCCCCchHHHHHHCCCeE
Q 000086 88 TPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDA--------VWPGWGHASEIPELPDTLSTKGIIF 159 (2304)
Q Consensus 88 t~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDa--------V~pG~G~~SEn~~la~~l~~~GI~f 159 (2304)
.+-|.+....+++.+++.+.+++.+ ..|+++|++.++++ |++|||+.++. +...+ .
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~lgpst--------~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~~~------i~~~~--~ 201 (727)
T PRK14016 138 TPFDLEAALARLRELDEDERLGPST--------AAIVDAAEARGIPYIRLGDGSLVQLGYGKYQRR------IQAAE--T 201 (727)
T ss_pred CCcCHHHHHHHHHHHHHhcccCCCH--------HHHHHHHHHcCCCEEEeCCCCeEecCCcHHHHH------HHHhc--C
Confidence 1237788899999999999997643 58999999999988 99999997763 34444 3
Q ss_pred ECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecC
Q 000086 160 LGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2304)
Q Consensus 160 iGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2304)
.+++..++..++||..++++++++|||+|++.. +.+.+++.++++++||||||||..
T Consensus 202 ~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~-----------------------v~s~~~a~~~a~~iG~PvVVKP~~ 258 (727)
T PRK14016 202 DQTSAIAVDIACDKELTKRLLAAAGVPVPEGRV-----------------------VTSAEDAWEAAEEIGYPVVVKPLD 258 (727)
T ss_pred CCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeE-----------------------eCCHHHHHHHHHHcCCCEEEEECC
Confidence 479999999999999999999999999999765 778999999999999999999999
Q ss_pred CCCCcCeEE-ECCHHHHHHHHHHHHhhCCCCcEEEEEeccc---------------cceeeEEEEEcCCCCEEEeecccc
Q 000086 240 GGGGKGIRK-VHNDDEVRALFKQVQGEVPGSPIFIMKVASQ---------------SRHLEVQLLCDQYGNVAALHSRDC 303 (2304)
Q Consensus 240 GgGGkGIr~-V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g---------------~reieVqvl~D~~G~vi~l~~Rdc 303 (2304)
|++|+||++ +++++++.++++.+... +..++||+|++| .++++.++++|+++++..+..+..
T Consensus 259 G~~G~GV~~~v~~~~el~~a~~~a~~~--~~~viVEe~I~G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n 336 (727)
T PRK14016 259 GNHGRGVTVNITTREEIEAAYAVASKE--SSDVIVERYIPGKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVN 336 (727)
T ss_pred CCCCCceEEecCCHHHHHHHHHHHHHh--CCeEEEEEecCCceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhh
Confidence 999999998 99999999999988754 368999999987 444555555666555554444322
Q ss_pred cccccc----------------------------------ceEE-E-------eCCCCCCCHHHHHHHHHHHHHHHHHCC
Q 000086 304 SVQRRH----------------------------------QKII-E-------EGPITVAPLETVKKLEQAARRLAKCVN 341 (2304)
Q Consensus 304 Svqrr~----------------------------------qKii-e-------eaPa~~l~~e~~~~m~e~A~rlakalG 341 (2304)
.-.||. +++. . ++-+...++++.+++.+.|.++++.+|
T Consensus 337 ~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~aa~~~g 416 (727)
T PRK14016 337 QDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERAAKIIG 416 (727)
T ss_pred cCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHHHHhcC
Confidence 111211 1111 0 011222355677889999999999999
Q ss_pred ceeeeEEEEEEEc-----cCCcEEEEEeccCCCCCcce-ehhhhcCCHHHHHHHH
Q 000086 342 YVGAATVEYLYSM-----ETGEYYFLELNPRLQVEHPV-TEWIAEINLPAAQVAV 390 (2304)
Q Consensus 342 y~Ga~tVEfl~d~-----~~g~~yfLEINpRlqgehpv-tE~vtGVDL~~~qL~i 390 (2304)
+ +.+.||++.+. ...++.++|+|..++..... .....+.|.....+..
T Consensus 417 l-~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Iid~ 470 (727)
T PRK14016 417 L-DIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMHLAPSEGKPRNVGEAIVDM 470 (727)
T ss_pred C-CEEEEEEEecCcccccccCCcEEEEEcCCcchhhccCCCCCcchhHHHHHHHH
Confidence 8 67779998862 12467999999998865321 2223566766666654
No 90
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=99.83 E-value=1.2e-20 Score=196.41 Aligned_cols=110 Identities=35% Similarity=0.608 Sum_probs=100.8
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|++||||+|||++|++++|+||++|+++ |+|.+ +.+..+.+.++||+.|.+|++++.++|+|++.|+++
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~Gi~t---------v~v~s--~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~i 69 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELGIET---------VAVNS--NPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDI 69 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTTSEE---------EEEEE--GGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCcc---------eeccC--chhcccccccccccceecCcchhhhhhccHHHHhhH
Confidence 6899999999999999999999999888 45666 556899999999999999999999999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHH
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam 167 (2304)
|+++++|++||||||++|+++|++.|++.|+.|+||++++|
T Consensus 70 a~~~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 70 ARKEGADAIHPGYGFLSENAEFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp HHHTTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-HHHH
T ss_pred hhhhcCcccccccchhHHHHHHHHHHHHCCCEEECcChHhC
Confidence 99999999999999999999999999999999999999986
No 91
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.82 E-value=1.2e-18 Score=214.71 Aligned_cols=267 Identities=13% Similarity=0.170 Sum_probs=185.4
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~ 129 (2304)
+|..+ ++..++.++++|++.|++|+ +++...+. ..-...+++|+++.+... .+..|.+...++++.
T Consensus 20 ~i~~~-~shsaL~I~~gAkeeGf~ti---------~v~~~~~~-~~y~~~~~~De~i~v~~~---~di~~~~~~~~l~~~ 85 (358)
T PRK13278 20 TIATI-GSHSSLQILKGAKKEGFRTI---------AICKKKRE-VFYKRFPVADEFIIVDDF---SDILNEAVQEKLREM 85 (358)
T ss_pred eEEEE-ecccHHHHHHHHHHCCCeEE---------EEEeCCCc-cccccccccceEEEEcch---hhhcCHHHHHHHhhc
Confidence 44444 57889999999999999985 44554433 334566788999988421 112333444444444
Q ss_pred cCCCE-EEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDA-VWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDa-V~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
++ ++|. |....... .+.+.+.++++. |+.++++...||..++++++++|||+|++..
T Consensus 86 ---~~iiIp~-gs~v~y~~-~d~l~~~~~p~~-gn~~~l~~e~dK~~~k~~L~~aGIp~p~~~~---------------- 143 (358)
T PRK13278 86 ---NAILIPH-GSFVAYLG-LENVEKFKVPMF-GNREILRWEADRDKERKLLEEAGIRIPRKYE---------------- 143 (358)
T ss_pred ---CcEEEeC-CCcceeec-HHHHHHCCCCcC-CCHHHHHHhcCHHHHHHHHHHcCCCCCCEeC----------------
Confidence 44 4444 44444333 444446787766 4888999999999999999999999999532
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh---CCCCcEEEEEeccccceeeE
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE---VPGSPIFIMKVASQSRHLEV 285 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e---~~~~~i~VEeyI~g~reieV 285 (2304)
+.+ +++|||||||..|.||+|+++|+|.+|+.++++.+.+. .....++||||+.| .++++
T Consensus 144 ---------~~~-------~i~~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G-~e~sv 206 (358)
T PRK13278 144 ---------SPE-------DIDRPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVG-VPYYF 206 (358)
T ss_pred ---------CHH-------HcCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCCC-cEEEE
Confidence 333 25799999999999999999999999999999987531 12568999999987 69999
Q ss_pred EEEEcC-CCCEE--Eeeccccc---cccc-----------cceE--EEeCCCCCCCHHHHHHHHHHHHHHHHH----C--
Q 000086 286 QLLCDQ-YGNVA--ALHSRDCS---VQRR-----------HQKI--IEEGPITVAPLETVKKLEQAARRLAKC----V-- 340 (2304)
Q Consensus 286 qvl~D~-~G~vi--~l~~RdcS---vqrr-----------~qKi--ieeaPa~~l~~e~~~~m~e~A~rlaka----l-- 340 (2304)
+++... +|++- .+-.|--+ ...| +... ...-|+. +...+.+++.+.+.+++++ +
T Consensus 207 ~~f~s~~~~~~e~l~id~r~~~~~d~~~r~p~~~~~~~~~~p~~v~~Gn~P~~-~resll~~v~~~~~~~v~a~~~~~~~ 285 (358)
T PRK13278 207 HYFYSPIKNRLELLGIDRRYESNIDGLVRIPAKDQLELGIDPTYVVVGNIPVV-LRESLLPQVFEYGERFVETSKELVPP 285 (358)
T ss_pred EEEEeccCCeEEEEeeceeeeecccceeeccchhhhhcccCCceeEecceecc-chHhHHHHHHHHHHHHHHHHHHhcCc
Confidence 999752 34432 22222111 0011 0001 1122444 6677778888888888887 4
Q ss_pred CceeeeEEEEEEEccCCcEEEEEeccCCCCC
Q 000086 341 NYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2304)
Q Consensus 341 Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2304)
|..|++++|+++++ ++.+|++|+|+|++|+
T Consensus 286 ~~~Gp~~ie~~~~~-d~~~~V~Eis~R~~gg 315 (358)
T PRK13278 286 GMIGPFCLESVVTD-NLEIVVFEISARIVAG 315 (358)
T ss_pred cccCCceEEEEEcC-CCCEEEEEEeCcccCC
Confidence 66799999999984 7889999999999553
No 92
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.82 E-value=8.1e-19 Score=213.92 Aligned_cols=226 Identities=15% Similarity=0.159 Sum_probs=168.5
Q ss_pred CCCEEEeCCCc----CCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 131 RVDAVWPGWGH----ASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 131 ~vDaV~pG~G~----~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
++|+|++..+. ..++ ....++..| .++++++.++..+.||..++.+++++|||+|+|..
T Consensus 57 ~~d~v~~~~~~~~~~~~~~--~~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~-------------- 119 (300)
T PRK10446 57 HFDAVIPRIGTAITFYGTA--ALRQFEMLG-SYPLNESVAIARARDKLRSMQLLARQGIDLPVTGI-------------- 119 (300)
T ss_pred CCCEEEEcCCCchhhHHHH--HHHHHHHCC-CceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEE--------------
Confidence 67999985432 1122 356777788 56789999999999999999999999999999765
Q ss_pred CcccccccccCCHHHHHHHhhcc-CCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc--cccee
Q 000086 207 PDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS--QSRHL 283 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~--g~rei 283 (2304)
+.+.+++.++.+++ |||+||||..|+||+||+++++.+++..+++.+... +.+++||+|++ .++++
T Consensus 120 ---------~~~~~~~~~~~~~~~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~--~~~~lvQe~I~~~~g~d~ 188 (300)
T PRK10446 120 ---------AHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGL--NAHILVQEYIKEAQGCDI 188 (300)
T ss_pred ---------eCCHHHHHHHHHHhCCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHhc--CCCEEEEeeeccCCCceE
Confidence 45677777777777 799999999999999999999999999888876432 36899999996 35899
Q ss_pred eEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEE
Q 000086 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLE 363 (2304)
.|.++++ +++....|.++-.....+....+ .. .+.++.+++.+.|.++++++|+. .+.|||+++ ++++||+|
T Consensus 189 rv~vig~---~~~~~~~r~~~~~~~~~n~~~g~-~~-~~~~l~~~~~~~a~~a~~alg~~-~~gvD~~~~--~~g~~vlE 260 (300)
T PRK10446 189 RCLVVGD---EVVAAIERRAKEGDFRSNLHRGG-AA-SVASITPQEREIAIKAARTMALD-VAGVDILRA--NRGPLVME 260 (300)
T ss_pred EEEEECC---EEEEEEEEecCCCchhheeccCC-ee-ccCCCCHHHHHHHHHHHHHhCCC-EEEEEEEEc--CCCcEEEE
Confidence 9988753 55555444332110011111111 00 11123456889999999999996 888999998 34499999
Q ss_pred eccCCCCCcceehhhhcCCHHHHHHHHHcCC
Q 000086 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGI 394 (2304)
Q Consensus 364 INpRlqgehpvtE~vtGVDL~~~qL~iA~G~ 394 (2304)
+|++++.. .++.++|+|+.+.+++.....
T Consensus 261 vN~~pg~~--~~~~~~g~~~~~~~~~~i~~~ 289 (300)
T PRK10446 261 VNASPGLE--GIEKTTGIDIAGKMIRWIERH 289 (300)
T ss_pred EECCCChh--hhHHHHCcCHHHHHHHHHHHh
Confidence 99998654 456789999999998876554
No 93
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.82 E-value=1.9e-18 Score=209.47 Aligned_cols=306 Identities=11% Similarity=0.111 Sum_probs=214.0
Q ss_pred HHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000086 35 VDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2304)
Q Consensus 35 ~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~ 114 (2304)
+.+-++...... -+|..+ +...|+.+++-||+.|++|+ +++..........+...+|+++.+.
T Consensus 6 ~~~~~~~y~~~~--~~i~t~-~SHsal~i~~gAk~egf~t~---------~v~~~~r~~~Y~~f~~~~d~~i~~~----- 68 (366)
T PRK13277 6 IKEILEGYDLDK--VKIGVL-ASHSALDVFDGAKDEGFRTI---------AVCQKGRERTYREFKGIVDEVIVLD----- 68 (366)
T ss_pred HHHHHhhcCccc--cEEEEE-ecchHHHHhccHHhcCCcEE---------EEEcCCCcchhhhhccccceEEEec-----
Confidence 344445444432 255555 46899999999999999984 5555443334444435689999984
Q ss_pred CCccCH--HHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHH-HCCCeEECCCHHHHH-HhcCHHHHHHHHHHCCCCcCCC
Q 000086 115 NNYANV--QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLS-TKGIIFLGPPATSMA-ALGDKIGSSLIAQAANVPTLPW 190 (2304)
Q Consensus 115 ~sY~dv--d~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~-~~GI~fiGPs~eam~-~lgDK~~sr~laq~aGVPtpp~ 190 (2304)
+|.|+ +.+.+-.++. ++|+.-.|...+..-. +..+ +..++++|+..-.-+ .=+||..+..+++++|||+|+.
T Consensus 69 -~f~~~~~~~~~~~l~~~--n~i~iPh~sf~~y~g~-~~ie~~~~vp~fGnr~~lrwE~~~dKk~~yk~L~~aGI~~Pk~ 144 (366)
T PRK13277 69 -KFKDILSEKVQDELREE--NAIFVPNRSFAVYVGY-DAIENEFKVPIFGNRYLLRWEERTGEKNYYWLLEKAGIPYPKL 144 (366)
T ss_pred -chhhhhhHHHHHHHHHC--CeEEecCCCeEEEecH-HHHhhcCCCCcccCHHHhhhhhccCHHHHHHHHHHcCCCCcee
Confidence 44332 2444444444 5555444655444222 4444 478888887544322 2379999888999999999985
Q ss_pred CCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCC--CcCeEEECCHHHHHHHHHHHHhhC--
Q 000086 191 SGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGG--GKGIRKVHNDDEVRALFKQVQGEV-- 266 (2304)
Q Consensus 191 s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgG--GkGIr~V~s~eEL~~a~~~~~~e~-- 266 (2304)
.. + .+++.|||||||..|.| |+|+++++|.+|+...........
T Consensus 145 ~~-------------------------~-------p~eId~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I 192 (366)
T PRK13277 145 FK-------------------------D-------PEEIDRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVI 192 (366)
T ss_pred ec-------------------------C-------ccccCccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcc
Confidence 43 2 24678999999999999 999999999999998877665311
Q ss_pred ---CCCcEEEEEeccccceeeEEEEEcC-CCCEEEe--eccccc----ccc---ccc---------eEEEeCCCCCCCHH
Q 000086 267 ---PGSPIFIMKVASQSRHLEVQLLCDQ-YGNVAAL--HSRDCS----VQR---RHQ---------KIIEEGPITVAPLE 324 (2304)
Q Consensus 267 ---~~~~i~VEeyI~g~reieVqvl~D~-~G~vi~l--~~RdcS----vqr---r~q---------KiieeaPa~~l~~e 324 (2304)
.-...+||||+.| .|+.++++.+. +|++..+ ..|.-+ +-| +.| -.+.+.|.+ +...
T Consensus 193 ~~~~~~~~iIQEyI~G-~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~~ql~~~~~p~~vv~G~~p~t-~rEs 270 (366)
T PRK13277 193 DREDLKNARIEEYVIG-AHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVGHEPAT-IRES 270 (366)
T ss_pred cccccccceeEeccCC-CEEEEEEEEeccCCcEEEEEEeeccccccccccccChhhhhhcccCCceEEEcCcccc-chHH
Confidence 1135579999987 79999999984 6754443 222111 000 111 112244555 6667
Q ss_pred HHHHHHHHHHHHHHHCC------ceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHH--HHcCCCC
Q 000086 325 TVKKLEQAARRLAKCVN------YVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVA--VGMGIPL 396 (2304)
Q Consensus 325 ~~~~m~e~A~rlakalG------y~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~--iA~G~pL 396 (2304)
+.+++.+.+.+++++++ ..|++++|++++ +++++|++|+|||++|+.++. +.+|.|.+.+.+. +.+|..+
T Consensus 271 lle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~-~d~~~~V~EInpR~gGGtnl~-~~aGs~y~~l~~~~~ms~GrRI 348 (366)
T PRK13277 271 LLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVT-PDLDFVVYDVAPRIGGGTNVY-MGVGSPYSKLYFGKPMSTGRRI 348 (366)
T ss_pred HHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEc-CCCcEEEEEEcCCcCCCccce-eecCCCcHHHHhcCccccCCcc
Confidence 88999999999999866 689999999998 468999999999999999887 4689999999999 9999887
Q ss_pred C
Q 000086 397 W 397 (2304)
Q Consensus 397 ~ 397 (2304)
.
T Consensus 349 a 349 (366)
T PRK13277 349 A 349 (366)
T ss_pred h
Confidence 5
No 94
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.81 E-value=7.9e-19 Score=211.40 Aligned_cols=226 Identities=19% Similarity=0.236 Sum_probs=163.2
Q ss_pred CCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCccc
Q 000086 131 RVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2304)
Q Consensus 131 ~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~ 210 (2304)
++|++++-.........+...++..|+++++ ++++++.+.||..++.+++++|||+|+|..
T Consensus 47 ~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n-~~~~~~~~~dK~~~~~~l~~~gip~P~t~~------------------ 107 (280)
T TIGR02144 47 DVDVAIIRCVSQSRALYSARLLEALGVPVIN-SSHVIEACGDKIFTYLKLAKAGVPTPRTYL------------------ 107 (280)
T ss_pred CCCEEEEcCcchhhHHHHHHHHHHCCCcEEC-cHHHHHHHhhHHHHHHHHHHCCcCCCCeEe------------------
Confidence 4577776411111112245677889999986 579999999999999999999999999865
Q ss_pred ccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh--CCCCcEEEEEeccc-cceeeEEE
Q 000086 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE--VPGSPIFIMKVASQ-SRHLEVQL 287 (2304)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e--~~~~~i~VEeyI~g-~reieVqv 287 (2304)
+.+.+++.++.+++|||+|+||..|+||+|+.++++.+++.++++..... ....++++|+|+++ ++++.+.+
T Consensus 108 -----~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~v 182 (280)
T TIGR02144 108 -----AFDREAALKLAEALGYPVVLKPVIGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFV 182 (280)
T ss_pred -----eCCHHHHHHHHHHcCCCEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEE
Confidence 56778888888889999999999999999999999999999877543221 12357999999986 47788777
Q ss_pred EEcCCCCEEEeeccccccccccceE-EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEecc
Q 000086 288 LCDQYGNVAALHSRDCSVQRRHQKI-IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2304)
Q Consensus 288 l~D~~G~vi~l~~RdcSvqrr~qKi-ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2304)
+++ ...+...|...-.+.+... ....|.. ++ +++.+.|.++++++|+ |.++|||++++ +|++||+|+|+
T Consensus 183 ig~---~~~~~~~r~~~~~~~~~~~g~~~~~~~-~~----~~~~~~a~~~~~~lg~-~~~~vD~~~~~-~g~~~v~EvN~ 252 (280)
T TIGR02144 183 IGD---EAIAAIYRYSNHWRTNTARGGKAEPCP-LD----EEVEELAVKAAEAVGG-GVVAIDIFESK-ERGLLVNEVNH 252 (280)
T ss_pred ECC---EEEEEEEEcCCchhhhhhcCCceeccC-CC----HHHHHHHHHHHHHhCC-CeEEEEEEEcC-CCCEEEEEEeC
Confidence 643 3332222211000101000 0111222 23 4578899999999996 68899999983 66899999999
Q ss_pred CCCCCcceehhhhcCCHHHHHHHHHc
Q 000086 367 RLQVEHPVTEWIAEINLPAAQVAVGM 392 (2304)
Q Consensus 367 RlqgehpvtE~vtGVDL~~~qL~iA~ 392 (2304)
|++... ++..+|+|+.+..++.+.
T Consensus 253 ~p~~~~--~~~~~g~~~~~~~~~~~~ 276 (280)
T TIGR02144 253 VPEFKN--SVRVTGVNVAGEILEYAV 276 (280)
T ss_pred Ccchhh--hhHhhCCCHHHHHHHHHH
Confidence 987643 456899999999998764
No 95
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.78 E-value=2.7e-18 Score=192.26 Aligned_cols=167 Identities=22% Similarity=0.379 Sum_probs=138.2
Q ss_pred HHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEee-cCCCCCcCeEEECCHHHHHHH
Q 000086 180 AQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKA-SWGGGGKGIRKVHNDDEVRAL 258 (2304)
Q Consensus 180 aq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKP-s~GgGGkGIr~V~s~eEL~~a 258 (2304)
++++|+|+|||.. +.+.+|+..+++++|||+|+|+ ..|..|||..++++.+|+..+
T Consensus 1 l~~~gip~~~~~~-----------------------i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a 57 (172)
T PF02222_consen 1 LDELGIPTAPYAT-----------------------IDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKA 57 (172)
T ss_dssp HHHTT--B-EEEE-----------------------ESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHH
T ss_pred CcccCCCCCCeEE-----------------------ECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHH
Confidence 5789999999987 8899999999999999999995 555699999999999999999
Q ss_pred HHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 000086 259 FKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAK 338 (2304)
Q Consensus 259 ~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlak 338 (2304)
++.+ ...++++|+|++..+|++|.+..+.+|++..+.. -..+++.+......+|+. +++++.+++.+.|.++++
T Consensus 58 ~~~~----~~~~~ilE~~v~f~~EiSvivaR~~~G~~~~yp~-~en~~~~~il~~s~~Pa~-i~~~~~~~a~~ia~~i~~ 131 (172)
T PF02222_consen 58 WQEL----GGGPCILEEFVPFDREISVIVARDQDGEIRFYPP-VENVHRDGILHESIAPAR-ISDEVEEEAKEIARKIAE 131 (172)
T ss_dssp HHHT----TTSCEEEEE---ESEEEEEEEEEETTSEEEEEEE-EEEEEETTEEEEEEESCS-S-HHHHHHHHHHHHHHHH
T ss_pred HHhc----CCCcEEEEeccCCcEEEEEEEEEcCCCCEEEEcC-ceEEEECCEEEEEECCCC-CCHHHHHHHHHHHHHHHH
Confidence 9987 3679999999999999999999999998776433 356677776666778987 889999999999999999
Q ss_pred HCCceeeeEEEEEEEccCCc-EEEEEeccCCCCCcceeh
Q 000086 339 CVNYVGAATVEYLYSMETGE-YYFLELNPRLQVEHPVTE 376 (2304)
Q Consensus 339 alGy~Ga~tVEfl~d~~~g~-~yfLEINpRlqgehpvtE 376 (2304)
+++|+|++.|||+++. +|+ +||.|+.||+..+..+|-
T Consensus 132 ~l~~vGv~~VE~Fv~~-~g~~v~vNEiaPRpHnSGh~Ti 169 (172)
T PF02222_consen 132 ALDYVGVLAVEFFVTK-DGDEVLVNEIAPRPHNSGHWTI 169 (172)
T ss_dssp HHTSSEEEEEEEEEET-TSTEEEEEEEESS--GGGGGHH
T ss_pred HcCcEEEEEEEEEEec-CCCEEEEEeccCCccCcccEee
Confidence 9999999999999994 676 999999999988765553
No 96
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.78 E-value=2.4e-18 Score=224.05 Aligned_cols=283 Identities=16% Similarity=0.167 Sum_probs=199.3
Q ss_pred hhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCC
Q 000086 33 SEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGT 112 (2304)
Q Consensus 33 ~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~ 112 (2304)
..+.+++++.|..++. +-+......|.++. +++||+.+ ..++ ..+.++. |+.+.+++.+
T Consensus 178 ~~l~e~a~~~G~~~i~--L~V~~~N~~Ai~fY---~klGf~~~---------~~y~--~~d~~~~-----~~~~~~g~~~ 236 (547)
T TIGR03103 178 RALAEHFQSRGCAYMD--LSVMHDNEQAIALY---EKLGFRRI---------PVFA--LKRKNAI-----NERLFSGPAP 236 (547)
T ss_pred HHHHHHHHHCCCCEEE--EEEcCCCHHHHHHH---HHCCCEEe---------eEEE--EeccCCc-----CcccccCCCc
Confidence 3455666666544321 12223345555444 57888764 3344 3344554 8988887655
Q ss_pred CCCCccCH--HHHHHHHHHcCCCEEEeCCCcCCCCCchH-------HHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHC
Q 000086 113 NNNNYANV--QLIVEMAEMTRVDAVWPGWGHASEIPELP-------DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAA 183 (2304)
Q Consensus 113 ~~~sY~dv--d~Ii~iA~~~~vDaV~pG~G~~SEn~~la-------~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~a 183 (2304)
..+ +|. +.|++.|++.++++++.. +|+..+. ..|... +. .-+++.+|..++||..++++++++
T Consensus 237 ~~~--l~~y~~~Ii~~a~~~Gi~~~~~~----se~~~~~L~~g~~~~~~~~s-~~-~~~s~~ai~~~~DK~~tk~lL~~a 308 (547)
T TIGR03103 237 EAD--LNPYARIIVDEARRRGIEVEVLD----AEGGLFRLSLGGRSIRCRES-LS-ELTSAVAMSLCDDKRLTRRLVSEA 308 (547)
T ss_pred ccc--cCHHHHHHHHHHHHcCCcEEEEC----CCCCEEEecCCceEEEEEec-cC-CCCCHHHHHHhcCHHHHHHHHHHc
Confidence 433 566 999999999999999944 4444442 111111 11 126899999999999999999999
Q ss_pred CCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEE-ECCHHHHHHHHHHH
Q 000086 184 NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRK-VHNDDEVRALFKQV 262 (2304)
Q Consensus 184 GVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~-V~s~eEL~~a~~~~ 262 (2304)
|||+|+|.. +.+.+++.++++++| |+||||..|++|+||++ +++.++|.++++.+
T Consensus 309 GIpVP~~~~-----------------------~~~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a 364 (547)
T TIGR03103 309 GLQVPEQQL-----------------------AGNGEAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKA 364 (547)
T ss_pred CcCCCCEEE-----------------------ECCHHHHHHHHHHhC-CEEEEECCCCCCcCeEEecCCHHHHHHHHHHH
Confidence 999999876 567888888999999 69999999999999997 99999999999988
Q ss_pred HhhCCCCcEEEEEecccc--cee-------------eEEEEEcCCCCEEEeeccccccccc-------------------
Q 000086 263 QGEVPGSPIFIMKVASQS--RHL-------------EVQLLCDQYGNVAALHSRDCSVQRR------------------- 308 (2304)
Q Consensus 263 ~~e~~~~~i~VEeyI~g~--rei-------------eVqvl~D~~G~vi~l~~RdcSvqrr------------------- 308 (2304)
.... ..++||+|++|. |++ +.++++|+++++..|.++...-.++
T Consensus 365 ~~~~--~~vlvEe~i~G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~ 442 (547)
T TIGR03103 365 RQFC--DRVLLERYVPGEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLA 442 (547)
T ss_pred HhcC--CcEEEEEeccCCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHH
Confidence 7553 589999999874 344 6678888888877766554211000
Q ss_pred ------------cceEE--------EeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEc-cCCcEEEEEeccC
Q 000086 309 ------------HQKII--------EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM-ETGEYYFLELNPR 367 (2304)
Q Consensus 309 ------------~qKii--------eeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~-~~g~~yfLEINpR 367 (2304)
.+++. .++.+..++.++.+++.++|+++++++|+. .+.||++.+. ...++.|||+|.|
T Consensus 443 ~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~~gl~-~~GvD~i~~~~~~p~~~iiEvN~~ 521 (547)
T TIGR03103 443 EAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARALDIP-VVGIDFLVPDVTGPDYVIIEANER 521 (547)
T ss_pred HcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHHhCCC-eEEEEEEeccCCCCCeEEEEecCC
Confidence 11110 012223345678889999999999999985 6679999863 1234699999999
Q ss_pred CCCC
Q 000086 368 LQVE 371 (2304)
Q Consensus 368 lqge 371 (2304)
++-.
T Consensus 522 Pgl~ 525 (547)
T TIGR03103 522 PGLA 525 (547)
T ss_pred cccc
Confidence 9855
No 97
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.77 E-value=4.7e-18 Score=185.87 Aligned_cols=70 Identities=27% Similarity=0.449 Sum_probs=67.4
Q ss_pred CCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 685 ~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
.++..|+|||||+|++|+|++||+|++||+|++||+|||+++|.||.+|+|..+ +++|+.|..|++|++|
T Consensus 82 ~~~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 82 AGENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 357889999999999999999999999999999999999999999999999999 9999999999999987
No 98
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=99.75 E-value=1.2e-17 Score=197.93 Aligned_cols=197 Identities=18% Similarity=0.184 Sum_probs=154.1
Q ss_pred CccccC----CCCChHHHhhcccCCCCCcccccccCCCceeccc--------CC--------------------CCeEEE
Q 000086 1889 VEYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE--------GW--------------------ARTVVT 1936 (2304)
Q Consensus 1889 ~~~~P~----~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~--------~~--------------------a~~vVt 1936 (2304)
..++|. ....+|++|+. |+|+|||.|+.. .| +++|||
T Consensus 57 ~~vcp~c~~h~rltAreRI~~-----------L~D~gSF~E~~~~~~~~dpl~f~~d~~~Y~~rl~~a~~~t~~~dgVVt 125 (296)
T CHL00174 57 MNICEQCGYHLKMSSSDRIEL-----------LIDPGTWNPMDEDMVSLDPIEFHSDEEPYKDRIDSYQKKTGLTDAVQT 125 (296)
T ss_pred CCCCCCCCCCcCCCHHHHHHH-----------HccCCccEEcCCccCcCCCccccccccchHHHHHHHHhccCCCccEEE
Confidence 345665 66789999997 899999999842 22 479999
Q ss_pred EEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCch
Q 000086 1937 GRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQ 2016 (2304)
Q Consensus 1937 G~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~ 2016 (2304)
|+|+|+|+||.|+|+|++++ ||+++...++|++|+++.|.+.++|||+|.++.|
T Consensus 126 G~G~I~Gr~v~v~a~Dftf~---------------------gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~SGG----- 179 (296)
T CHL00174 126 GIGQLNGIPVALGVMDFQFM---------------------GGSMGSVVGEKITRLIEYATNESLPLIIVCASGG----- 179 (296)
T ss_pred EEEEECCEEEEEEEECCccc---------------------ccCcCHHHHHHHHHHHHHHHHcCCCEEEEECCCC-----
Confidence 99999999999999999877 9999999999999999999999999999999998
Q ss_pred hhhhhhHHH--HHHHHHHHHH----cCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhh
Q 000086 2017 RDLFEGILQ--AGSTIVENLR----TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIK 2090 (2304)
Q Consensus 2017 ~~e~~gilk--~ga~iv~al~----~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~ 2090 (2304)
..|++|+.. ..+++..++. ...+|+|++++ |.+.||.++.+.. ..|+ ++|.|+|.+|+.||+-+-..
T Consensus 180 ARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~--gPt~GG~aas~a~--l~Di--iiae~~A~IgfAGPrVIe~t- 252 (296)
T CHL00174 180 ARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILT--SPTTGGVTASFGM--LGDI--IIAEPNAYIAFAGKRVIEQT- 252 (296)
T ss_pred ccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEc--CCCchHHHHHHHH--cccE--EEEeCCeEEEeeCHHHHHHh-
Confidence 466777754 3355533332 57799999999 6666665554432 3577 78999999999999654110
Q ss_pred cchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCccee
Q 000086 2091 FRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEV 2170 (2304)
Q Consensus 2091 ~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~v 2170 (2304)
+ +..++ +.++++..+.++|+||.|
T Consensus 253 ---------~-----------------ge~lp------------------------------e~fq~ae~l~~~G~vD~i 276 (296)
T CHL00174 253 ---------L-----------------NKTVP------------------------------EGSQAAEYLFDKGLFDLI 276 (296)
T ss_pred ---------c-----------------CCcCC------------------------------cccccHHHHHhCcCceEE
Confidence 0 00111 234688889999999999
Q ss_pred cCccchHHHHHHHHH
Q 000086 2171 VDWDKSRSFFCRRLR 2185 (2304)
Q Consensus 2171 i~~~~tR~~~~~~L~ 2185 (2304)
|++++.|..+...|+
T Consensus 277 V~r~~lr~~l~~ll~ 291 (296)
T CHL00174 277 VPRNLLKGVLSELFQ 291 (296)
T ss_pred EcHHHHHHHHHHHHH
Confidence 999999999987775
No 99
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=99.73 E-value=6.6e-17 Score=185.23 Aligned_cols=197 Identities=21% Similarity=0.285 Sum_probs=158.0
Q ss_pred CccccC----CCCChHHHhhcccCCCCCcccccccCCCceecccC--------------C-------------CCeEEEE
Q 000086 1889 VEYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG--------------W-------------ARTVVTG 1937 (2304)
Q Consensus 1889 ~~~~P~----~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~--------------~-------------a~~vVtG 1937 (2304)
...+|. ...+++++|+. ++|.|||.|+..+ | .++||||
T Consensus 47 ~~vcp~c~~h~ri~A~~Ri~~-----------llD~gsf~el~~~l~~~dPL~F~d~k~Y~~rL~~a~~~tg~~davvtg 115 (294)
T COG0777 47 LKVCPKCGHHMRISARERLEA-----------LLDEGSFEELDSPLEPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTG 115 (294)
T ss_pred hhcccccCcccccCHHHHHHH-----------hhCCCcceecccCCCcCCcccCCcchhhHHHHHHHHhhcCCCcceEEE
Confidence 345776 67789999997 7999999998542 2 4699999
Q ss_pred EEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchh
Q 000086 1938 RARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQR 2017 (2304)
Q Consensus 1938 ~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~ 2017 (2304)
.|+|+|.||.+++.|+.|+ ||+++...+.|++|+++.|...++|+|+|.-+.| .
T Consensus 116 ~g~i~G~pvv~av~df~Fm---------------------gGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGG-----A 169 (294)
T COG0777 116 EGTINGLPVVLAVMDFAFM---------------------GGSMGSVVGEKITRAIERAIEDKLPLVLFSASGG-----A 169 (294)
T ss_pred eeEECCeEEEEEEEecccc---------------------ccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcc-----h
Confidence 9999999999999999988 9999999999999999999999999999999988 8
Q ss_pred hhhhhHHHH--HHH---HHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcc
Q 000086 2018 DLFEGILQA--GST---IVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFR 2092 (2304)
Q Consensus 2018 ~e~~gilk~--ga~---iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r 2092 (2304)
.|++|++.. .++ .+.-++++..|.|+|++ ..+.||.-+.++. -.|+ .+|.|.|.||+.||+-+- -
T Consensus 170 RMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt--~PTtGGVsASfA~--lGDi--~iAEP~AlIGFAGpRVIE-Q--- 239 (294)
T COG0777 170 RMQEGILSLMQMAKTSAALKRLSEAGLPYISVLT--DPTTGGVSASFAM--LGDI--IIAEPGALIGFAGPRVIE-Q--- 239 (294)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEec--CCCccchhHhHHh--ccCe--eecCcccccccCcchhhh-h---
Confidence 999999863 344 45557778899999999 6778874333332 1377 899999999999996541 0
Q ss_pred hhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecC
Q 000086 2093 TKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2172 (2304)
Q Consensus 2093 ~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~ 2172 (2304)
.+.+ ..-|-++++..+.++|+||.||+
T Consensus 240 -----------------------------------Tire------------------~LPegfQ~aEfLlehG~iD~iv~ 266 (294)
T COG0777 240 -----------------------------------TIRE------------------KLPEGFQTAEFLLEHGMIDMIVH 266 (294)
T ss_pred -----------------------------------hhcc------------------cCCcchhhHHHHHHcCCceeeec
Confidence 0001 11245678999999999999999
Q ss_pred ccchHHHHHHHHH
Q 000086 2173 WDKSRSFFCRRLR 2185 (2304)
Q Consensus 2173 ~~~tR~~~~~~L~ 2185 (2304)
..+.|..+...|.
T Consensus 267 R~elr~tla~ll~ 279 (294)
T COG0777 267 RDELRTTLASLLA 279 (294)
T ss_pred HHHHHHHHHHHHH
Confidence 9998887765543
No 100
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.72 E-value=6.6e-17 Score=186.42 Aligned_cols=186 Identities=20% Similarity=0.273 Sum_probs=131.9
Q ss_pred HHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHH--HHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHH
Q 000086 179 IAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEE--AIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVR 256 (2304)
Q Consensus 179 laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~ee--a~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~ 256 (2304)
+++++|||||+|.. +. -.+... .......++||++|||..+|+|.||.+|+|.+||.
T Consensus 1 l~~~~gI~tp~~~~----~~-----------------~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~ 59 (203)
T PF07478_consen 1 LLKSAGIPTPPYVV----VK-----------------KNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELE 59 (203)
T ss_dssp HHHHTT-BB-SEEE----EE-----------------TTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHH
T ss_pred ChhhcCCCCCCEEE----Ee-----------------cccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHH
Confidence 57899999999976 10 011111 34567789999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccc--ccccc-------ceEEEeCCCCCCCHHHHH
Q 000086 257 ALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCS--VQRRH-------QKIIEEGPITVAPLETVK 327 (2304)
Q Consensus 257 ~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcS--vqrr~-------qKiieeaPa~~l~~e~~~ 327 (2304)
.+++++... +.+++||+|++| +|++|-+++++...+......... +.... .......|+. +++++.+
T Consensus 60 ~ai~~~~~~--~~~vlVEefI~G-~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa~-l~~~~~~ 135 (203)
T PF07478_consen 60 EAIEKAFKY--DDDVLVEEFISG-REFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPAD-LSEELQE 135 (203)
T ss_dssp HHHHHHTTT--HSEEEEEE--SS-EEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS-S-S-HHHHH
T ss_pred HHHHHHhhh--cceEEEEeeecc-cceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecCC-CCHHHHH
Confidence 999998743 579999999954 999999999876555444322211 11111 2233345665 8899999
Q ss_pred HHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCC----cceehhhhcCCHHHHHHHH
Q 000086 328 KLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 328 ~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqge----hpvtE~vtGVDL~~~qL~i 390 (2304)
+|.+.|.++.+++|.+|.+.|||+++ ++|++||+|+|+-++-+ .|..-...|+++.++..++
T Consensus 136 ~i~~~a~~a~~~lg~~~~~RiD~rv~-~~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~i 201 (203)
T PF07478_consen 136 KIKEIAKKAFKALGCRGYARIDFRVD-EDGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIERI 201 (203)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEEEEEE-TTTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCceeEEEEec-cCCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999998 47899999999988743 1323334677776665543
No 101
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=1.7e-15 Score=184.65 Aligned_cols=237 Identities=20% Similarity=0.293 Sum_probs=183.5
Q ss_pred cCCCEEEe-CCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWP-GWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~p-G~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
.++|.++| +.|+..|+-.+...|+-.|++++|++..+-..++||..+|.+++..|+|+++|..- ..
T Consensus 60 ~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~-------------~~ 126 (317)
T COG1181 60 QKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVAL-------------TR 126 (317)
T ss_pred ccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeee-------------ec
Confidence 35677776 46778899899999999999999999999999999999999999999999998760 00
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl 288 (2304)
.- . +.....+..+..+||++|||...+++.|+.+|++.+|+..+.+.+... +..+++|+|+. ++|++|.++
T Consensus 127 ~~-----~-~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~--d~~vl~e~~~~-~rei~v~vl 197 (317)
T COG1181 127 DE-----Y-SSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY--DRDVLREQGIT-GREIEVGVL 197 (317)
T ss_pred cc-----c-hhHHHHHhhcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHh--CCceeeccCCC-cceEEEEec
Confidence 00 0 223344566789999999999999999999999999999977777644 57899999998 699999999
Q ss_pred EcCCCCEEEe-----eccccccccccceEEE------eCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCC
Q 000086 289 CDQYGNVAAL-----HSRDCSVQRRHQKIIE------EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETG 357 (2304)
Q Consensus 289 ~D~~G~vi~l-----~~RdcSvqrr~qKiie------eaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g 357 (2304)
.+.. ....+ ....-.++-+..|.+. ..|+. +++++.+++.++|.++.+++|..|.+.+||++++.+|
T Consensus 198 ~~~~-~~~~l~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~-lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g 275 (317)
T COG1181 198 GNDY-EEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAG-LTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEG 275 (317)
T ss_pred CCcc-cceecCceEEecCCCeEEeeeccccCCCCceeeCCCC-CCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCC
Confidence 8854 22222 1111233344445554 23443 8999999999999999999999999999999994358
Q ss_pred cEEEEEeccCCCCC--c--ceehhhhcCCHHHHHHHH
Q 000086 358 EYYFLELNPRLQVE--H--PVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 358 ~~yfLEINpRlqge--h--pvtE~vtGVDL~~~qL~i 390 (2304)
++|++|+|+.+|-. | |-.-...|+++..+...+
T Consensus 276 ~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~~~~ 312 (317)
T COG1181 276 EFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILVLRF 312 (317)
T ss_pred CEEEEEEeCCCCCcccccchhhHHHcCCCHHHHHHHH
Confidence 89999999999843 2 333334566666555443
No 102
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.67 E-value=1e-15 Score=173.29 Aligned_cols=167 Identities=20% Similarity=0.278 Sum_probs=130.3
Q ss_pred cCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcE-EEeecCCCCCcCeEEE
Q 000086 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPA-MIKASWGGGGKGIRKV 249 (2304)
Q Consensus 171 gDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPV-VIKPs~GgGGkGIr~V 249 (2304)
++|..+|++|+++||||++|.. +++.+++.+++++.++|+ ||||..-.+||||.++
T Consensus 1 ~SK~faK~fm~~~~IPTa~~~~-----------------------f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~ 57 (194)
T PF01071_consen 1 GSKSFAKEFMKRYGIPTAKYKV-----------------------FTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIA 57 (194)
T ss_dssp HBHHHHHHHHHHTT-SB--EEE-----------------------ESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEE
T ss_pred CCHHHHHHHHHHcCCCCCCeeE-----------------------ECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEe
Confidence 4899999999999999999876 789999999999999999 9999999999999999
Q ss_pred CCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEE-----------
Q 000086 250 HNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE----------- 314 (2304)
Q Consensus 250 ~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiie----------- 314 (2304)
.|.+|..++++++.... .+++++||||+.| +|+++.++.|+.. ++.+. .-+.|.++.+
T Consensus 58 ~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~G-~E~S~~a~~dG~~-~~~lp-----~aqD~Kr~~dgd~GpnTGGMG 130 (194)
T PF01071_consen 58 DDREEALEALREIFVDRKFGDAGSKVVIEEFLEG-EEVSLFALTDGKN-FVPLP-----PAQDHKRLFDGDTGPNTGGMG 130 (194)
T ss_dssp SSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---S-EEEEEEEEEESSE-EEEEE-----EBEEEEEEETTTEEEEESESE
T ss_pred CCHHHHHHHHHHhccccccCCCCCcEEEEeccCC-eEEEEEEEEcCCe-EEECc-----chhccccccCCCCCCCCCCcc
Confidence 99999999999987532 2479999999977 8999999999863 33331 2233555433
Q ss_pred -eCCCCCCCHHHHHHHHH-HHHHHHHHC-----CceeeeEEEEEEEccCCcEEEEEeccCCC
Q 000086 315 -EGPITVAPLETVKKLEQ-AARRLAKCV-----NYVGAATVEYLYSMETGEYYFLELNPRLQ 369 (2304)
Q Consensus 315 -eaPa~~l~~e~~~~m~e-~A~rlakal-----Gy~Ga~tVEfl~d~~~g~~yfLEINpRlq 369 (2304)
.+|.+.++++..+++.+ ....+.+++ .|+|...+.++++ ++++++||.|.|++
T Consensus 131 a~sp~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt--~~Gp~vlEfN~RfG 190 (194)
T PF01071_consen 131 AYSPVPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLT--EDGPKVLEFNVRFG 190 (194)
T ss_dssp EEESTTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEE--TTEEEEEEEESSGS
T ss_pred ceeecccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEe--CCCcEEEEEeCCCC
Confidence 24888888888877765 555555544 8899999999999 67799999999997
No 103
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.66 E-value=6.4e-16 Score=176.93 Aligned_cols=299 Identities=18% Similarity=0.196 Sum_probs=210.2
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~ 129 (2304)
-|+|+|+...-..+.||..+.-+. .. +...|--.. .+.|++.....-++. .++.. +..+.++|++
T Consensus 5 gviilGgahgtlalARSfg~~~vp---------v~--~ls~d~plP-t~Sr~vr~t~~w~gp-hd~ga--iafLrd~Aek 69 (415)
T COG3919 5 GVIILGGAHGTLALARSFGEEFVP---------VL--ALSADGPLP-TYSRIVRVTTHWNGP-HDEGA--IAFLRDFAEK 69 (415)
T ss_pred ceEEEcccchhHHHHHhhccccce---------EE--EEecCCCCc-chhhhheeeeccCCC-CcccH--HHHHHHHHhh
Confidence 478998877777777777654322 22 332343233 388888888887663 33334 7899999999
Q ss_pred cCCCE---EEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 130 TRVDA---VWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 130 ~~vDa---V~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
++-.. |-.|-|..--.....+.|.+. ..++-|+....+.+-+|-..+..|.+.|+|+|.+..
T Consensus 70 hglkg~LLva~GDgev~lvSq~reeLSa~-f~v~lp~w~~l~wlceKPllY~ra~elgl~~P~Ty~-------------- 134 (415)
T COG3919 70 HGLKGYLLVACGDGEVLLVSQYREELSAF-FEVPLPDWALLRWLCEKPLLYNRAEELGLPYPKTYL-------------- 134 (415)
T ss_pred cCcCceEEEecCCceeeehHhhHHHHHHH-hcCCCCcHHHHHHHhhCcHHHHHHHHhCCCCcceEE--------------
Confidence 97654 222322211111122444332 234559999999999999999999999999999776
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCC-----CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccc
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-----GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSR 281 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-----GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~r 281 (2304)
++|..+. ...++-||||+||-.|+ +-+....+.|.+|+..++..+.++...+.++||+||+|+.
T Consensus 135 ---------v~S~~d~--~~~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGg 203 (415)
T COG3919 135 ---------VNSEIDT--LVDELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGG 203 (415)
T ss_pred ---------ecchhhh--hhhheeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCC
Confidence 6665554 45678999999999988 4456778899999999999999988778999999999986
Q ss_pred eeeE--EEEEcCCCCEEEeeccccccccccceEEEeC-CCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCc
Q 000086 282 HLEV--QLLCDQYGNVAALHSRDCSVQRRHQKIIEEG-PITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2304)
Q Consensus 282 eieV--qvl~D~~G~vi~l~~RdcSvqrr~qKiieea-Pa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~ 358 (2304)
|-.. -.+.|. |..+.. |+-.|-.|.-...+ .++.+.-...+++.++|+++++.+++.|...|||++|+.||.
T Consensus 204 E~qfsyaAlw~~-g~pvae----ftarr~rqyPvdfgytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDGs 278 (415)
T COG3919 204 ENQFSYAALWDK-GHPVAE----FTARRLRQYPVDFGYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGS 278 (415)
T ss_pred cccchHHHHHhC-CCchhh----hhcchhhcCCcccccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCCc
Confidence 5332 234454 444432 44444333322111 011111111578899999999999999999999999999999
Q ss_pred EEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCC
Q 000086 359 YYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIP 395 (2304)
Q Consensus 359 ~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~p 395 (2304)
+.++|+|||++...-+.. +.|+||-.....+..+.+
T Consensus 279 ~KlldvNpRpw~wfgl~t-aaG~nLg~~Lwa~~~~~~ 314 (415)
T COG3919 279 YKLLDVNPRPWRWFGLVT-AAGYNLGRYLWADRINNE 314 (415)
T ss_pred eeEEeecCCCcceeeEEe-cccccccceEEeeecCCc
Confidence 999999999988765553 589999988887777654
No 104
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.65 E-value=1.8e-16 Score=172.10 Aligned_cols=71 Identities=21% Similarity=0.342 Sum_probs=68.4
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
+++.|+|||+|++++++|++||+|++||+|++||||||+|+|.||.+|+|+.| +++|+.|+.||+|++|++
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence 46789999999999999999999999999999999999999999999999999 899999999999999864
No 105
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.64 E-value=3.6e-16 Score=174.21 Aligned_cols=158 Identities=20% Similarity=0.301 Sum_probs=87.0
Q ss_pred hcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEE
Q 000086 170 LGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 249 (2304)
Q Consensus 170 lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V 249 (2304)
|.||..+++.++++|||+|.+... .......+|+|+||..|.||.||+++
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~------------------------------~~~~~~~~~~viKp~~G~Gg~~i~~~ 50 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRD------------------------------SEPEPIDGPWVIKPRDGAGGEGIRIV 50 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------------------------------------EESS--SSSEEEEESS-------B--
T ss_pred CCCHHHHHHHHHccCCCCCCcccc------------------------------ccccccCCcEEEEeCCCCCCCCeEEE
Confidence 689999999999999999932220 00112378999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccc-cc-cceEEEeCCCCCCCHHHHH
Q 000086 250 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQ-RR-HQKIIEEGPITVAPLETVK 327 (2304)
Q Consensus 250 ~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvq-rr-~qKiieeaPa~~l~~e~~~ 327 (2304)
++.+++........ ++|+|++| .++++.+++++.+..+....|.-.-. .. ...--...|.. .....
T Consensus 51 ~~~~~~~~~~~~~~--------i~Qe~i~G-~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~~~G~~~~~~---~~~~~ 118 (161)
T PF02655_consen 51 DSEDELEEFLNKLR--------IVQEFIEG-EPYSVSFLASGGGARLLGVNRQLIGNDDGRFRYCGGIVPAD---TPLKE 118 (161)
T ss_dssp SS--TTE---------------EEEE---S-EEEEEEEEE-SSSEEEEEEEEEEEET----TEEEEEEES-------HHH
T ss_pred CCchhhccccccce--------EEeeeeCC-EEeEEEEEEeCCceEEEEechHhhccccceeeecccccccC---CchHH
Confidence 99998876554422 99999987 89999999987544333322221000 00 11112223443 34488
Q ss_pred HHHHHHHHHHHHC-CceeeeEEEEEEEccCCcEEEEEeccCCCCC
Q 000086 328 KLEQAARRLAKCV-NYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2304)
Q Consensus 328 ~m~e~A~rlakal-Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2304)
++.+.+.++++++ |+.|...|||+++ ++++|+||||||++++
T Consensus 119 ~~~~~~~~i~~~l~gl~G~~giD~I~~--~~~~~viEINPR~t~S 161 (161)
T PF02655_consen 119 EIIELARRIAEALPGLRGYVGIDFILD--DGGPYVIEINPRFTGS 161 (161)
T ss_dssp HHHHHHHHHHTTSTT--EEEEEEEEES--S-SEEEEEEESS--GG
T ss_pred HHHHHHHHHHHHcCCCeeeEeEEEEEe--CCcEEEEEEcCCCCCC
Confidence 9999999999999 9999999999998 6899999999999864
No 106
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.7e-14 Score=176.40 Aligned_cols=228 Identities=18% Similarity=0.237 Sum_probs=162.8
Q ss_pred HcCCCEEEeCCCcCCCC-CchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPGWGHASEI-PELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn-~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
..+.|++++--+..... ..+.+.++..|..++ +++.++..|+||..+.+++..+|+|+|+|..
T Consensus 76 ~~~~D~i~~R~~~~~~~~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i--------------- 139 (318)
T COG0189 76 LDELDVIIMRKDPPFDFATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLI--------------- 139 (318)
T ss_pred hccCCEEEEecCCchhhHHHHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEEE---------------
Confidence 34668888764433332 334567888999888 9999999999999999999999999999876
Q ss_pred cccccccccCCHHHHHHHh-hccCCcEEEeecCCCCCcCeEEECCHH-HHHHHHHHHHhhCCCCcEEEEEeccccc-eee
Q 000086 208 DDVYRQACVYTTEEAIASC-QVVGYPAMIKASWGGGGKGIRKVHNDD-EVRALFKQVQGEVPGSPIFIMKVASQSR-HLE 284 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a-~~IGyPVVIKPs~GgGGkGIr~V~s~e-EL~~a~~~~~~e~~~~~i~VEeyI~g~r-eie 284 (2304)
+.+.++...+. +..|||+|+||.+|+||+||.+|+|.+ ++.+..+...... ...+++|+|++.+. ..-
T Consensus 140 --------~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~~-~~~~ivQeyi~~~~~~~r 210 (318)
T COG0189 140 --------TRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEG-RKLIIVQEYIPKAKRDDR 210 (318)
T ss_pred --------EcCHHHHHHHHHHhcCCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhccc-cceEehhhhcCcccCCcE
Confidence 55655555554 557899999999999999999999999 8888887776432 23699999998765 444
Q ss_pred EEEEEcCCCCEEEeecccccccccc----ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRH----QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~----qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
.-++.| |.+++.+ .++|.. .|---..-......++-+++++.|+++++++|. +...||++.+ ++++|
T Consensus 211 rivv~~--~~~~~~y----~~~R~~~~~~~R~N~a~Gg~~e~~~l~~e~~elA~kaa~~lGl-~~~GVDiie~--~~g~~ 281 (318)
T COG0189 211 RVLVGG--GEVVAIY----ALARIPASGDFRSNLARGGRAEPCELTEEEEELAVKAAPALGL-GLVGVDIIED--KDGLY 281 (318)
T ss_pred EEEEeC--CEEeEEe----eeccccCCCCceeeccccccccccCCCHHHHHHHHHHHHHhCC-eEEEEEEEec--CCCcE
Confidence 445554 4555533 233311 011000111112233446788999999999986 6777999998 78899
Q ss_pred EEEeccCCCCCcceehhhhcCCHHHHHHHHH
Q 000086 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 361 fLEINpRlqgehpvtE~vtGVDL~~~qL~iA 391 (2304)
++|+|.-+.+-+. ++..+|+|.....++..
T Consensus 282 V~EVN~sP~~~~~-i~~~~g~~~~~~~~~~i 311 (318)
T COG0189 282 VTEVNVSPTGKGE-IERVTGVNIAGLIIDAI 311 (318)
T ss_pred EEEEeCCCccccc-hhhhcCCchHHHHHHHH
Confidence 9999996554443 44568888888777653
No 107
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=99.59 E-value=7.5e-15 Score=189.78 Aligned_cols=151 Identities=21% Similarity=0.183 Sum_probs=118.4
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCC-ceecccCCC----------CeEEEEEEEECCeEEEEEEEecceeeccccCC
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDS-FVETLEGWA----------RTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1963 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gs-F~E~~~~~a----------~~vVtG~arl~G~pVGViA~e~~~~~~~~pad 1963 (2304)
....+|++|+. |||+|| |+|+.+.++ .+||||+|+|+|+||+|+++|+++.
T Consensus 80 gkltaReRI~~-----------LlD~gS~F~El~~lag~~~y~~~~~~dgVVtG~G~V~Gr~V~v~a~D~tv~------- 141 (569)
T PLN02820 80 NKLLPRERIDR-----------LLDPGSPFLELSQLAGHELYGEDLPSGGIVTGIGPVHGRLCMFVANDPTVK------- 141 (569)
T ss_pred CCCCHHHHHHH-----------HcCCCCCeEEchhhccCCcccccCCCCeEEEEEEEECCEEEEEEEECCCcc-------
Confidence 56889999997 899999 999875333 5799999999999999999987765
Q ss_pred CCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCC-CCchhhhhhhHHHHHHHHHHH---HHcCCC
Q 000086 1964 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGF-SGGQRDLFEGILQAGSTIVEN---LRTYKQ 2039 (2304)
Q Consensus 1964 pa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf-~~G~~~e~~gilk~ga~iv~a---l~~~~v 2039 (2304)
||++++.+++|++|++++|.++++|||+|+|++|. ++++ .+........++++.+ ++...+
T Consensus 142 --------------GGs~g~~~~~Ki~r~~elA~~~~lPlV~l~DSgGarl~~q-~e~~~~~~~~g~if~~~~~ls~~~V 206 (569)
T PLN02820 142 --------------GGTYYPITVKKHLRAQEIAAQCRLPCIYLVDSGGANLPRQ-AEVFPDRDHFGRIFYNQARMSSAGI 206 (569)
T ss_pred --------------CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCccc-ccccchHhHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999994 3432 2222222233555555 555679
Q ss_pred CEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCcc
Q 000086 2040 PVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2040 P~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
|+|++|+ |.++.||+|... +..++ +++.+++++++.+|+
T Consensus 207 P~Isvv~-G~~~gGgAy~~a---~~D~v--im~~~~a~i~~aGP~ 245 (569)
T PLN02820 207 PQIALVL-GSCTAGGAYVPA---MADES--VIVKGNGTIFLAGPP 245 (569)
T ss_pred CEEEEEe-CCCChHHHHHHH---hCCce--EEecCCcEEEecCHH
Confidence 9999999 345666777642 22344 677899999999994
No 108
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.57 E-value=1.8e-14 Score=197.01 Aligned_cols=310 Identities=21% Similarity=0.227 Sum_probs=210.7
Q ss_pred ccccCCCCCCCcccCCCcCCCccchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEE
Q 000086 8 SAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMA 87 (2304)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~va 87 (2304)
|.++||+.+|+++|.+ ..+..+.-+-+|..+.-|.. .+..|++++.++.+-+..
T Consensus 86 ~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~~~~~~~~-------------- 139 (864)
T TIGR02068 86 QNLAGMPVGFGRTRET---ATPGVYNVVVEYSHEQVGRY---------AGRLAVDLVRSAIDDGPF-------------- 139 (864)
T ss_pred HHHhCCCcccceEEec---CCCCeEEEEEEehhHHHhHH---------HHHHHHHHHHHHHhcCCC--------------
Confidence 5689999999999764 12222322333333333333 367788888888764321
Q ss_pred eccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEe--------CCCcCCCCCchHHHHHHCCCeE
Q 000086 88 TPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWP--------GWGHASEIPELPDTLSTKGIIF 159 (2304)
Q Consensus 88 t~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~p--------G~G~~SEn~~la~~l~~~GI~f 159 (2304)
|.+..-.+++...+...+++ +...|++.|.+.++....- |||.... .+.+ -.+
T Consensus 140 ---~~~~~~~~~~~~~~~~~~g~--------st~~i~~~a~~rgip~~~l~~~~~~qlg~g~~~~------~~~~--~~t 200 (864)
T TIGR02068 140 ---DLEQALQRLRDLVADASLGP--------STAAIVDEAEKRGIPYMRLSAGSLVQLGYGSRQK------RIQA--TET 200 (864)
T ss_pred ---CHHHHHHHHHHHHHhccCCC--------cHHHHHHHHHHCCCCEEEECCCCEEEecCCCEEE------EEEe--ecC
Confidence 33333445555444444443 2478999999999876543 3332111 0111 112
Q ss_pred ECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecC
Q 000086 160 LGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2304)
Q Consensus 160 iGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2304)
--.+..++..+.||..++++++++|||+|+|.. +.+.+++.++++++|||+||||..
T Consensus 201 ~~~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~-----------------------~~s~~ea~~~~~~ig~PvVVKP~~ 257 (864)
T TIGR02068 201 DRTSAIAVEIACDKDLTKEILSDAGVPVPEGTV-----------------------VQSAEDAWEAAQDLGYPVVIKPYD 257 (864)
T ss_pred CCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEE-----------------------ECCHHHHHHHHHHcCCCEEEEECC
Confidence 236788999999999999999999999999765 678999999999999999999999
Q ss_pred CCCCcCeEE-ECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeecccccc-------------
Q 000086 240 GGGGKGIRK-VHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSV------------- 305 (2304)
Q Consensus 240 GgGGkGIr~-V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSv------------- 305 (2304)
|++|+||.+ +++.+++.++++.+... +..++||+|++| +++.+-++. |+++....|....
T Consensus 258 g~~G~GV~l~v~s~~el~~a~~~a~~~--~~~vlVEefI~G-~e~rvlVv~---~~vvaa~~R~p~~V~GdG~~ti~eLi 331 (864)
T TIGR02068 258 GNHGRGVTINILTRDEIESAYEAAVEE--SSGVIVERFITG-RDHRLLVVG---GKVVAVAERVPAHVIGDGVHTIEELI 331 (864)
T ss_pred CCCccCEEEEeCCHHHHHHHHHHHHhh--CCcEEEEEeccC-CEEEEEEEC---CEEEEEEEecCCceecCccccHHHHH
Confidence 999999998 99999999999988754 368999999986 899986654 4566654444311
Q ss_pred ------ccc---cceEEE---------------------------------------eCCCCCCCHHHHHHHHHHHHHHH
Q 000086 306 ------QRR---HQKIIE---------------------------------------EGPITVAPLETVKKLEQAARRLA 337 (2304)
Q Consensus 306 ------qrr---~qKiie---------------------------------------eaPa~~l~~e~~~~m~e~A~rla 337 (2304)
.|| |.+.++ ++-+...++++.++..+.|++++
T Consensus 332 ~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa 411 (864)
T TIGR02068 332 EQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAA 411 (864)
T ss_pred HHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHH
Confidence 011 111110 11122345677888999999999
Q ss_pred HHCCceeeeEEEEEEEc-----cCCcEEEEEeccCCCCC-cceehhhhcCCHHHHHHHHHc
Q 000086 338 KCVNYVGAATVEYLYSM-----ETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGM 392 (2304)
Q Consensus 338 kalGy~Ga~tVEfl~d~-----~~g~~yfLEINpRlqge-hpvtE~vtGVDL~~~qL~iA~ 392 (2304)
+++|+. .+.||++... +..+..++|+|+.++-. |..-..-.+.|+....+....
T Consensus 412 ~~~gl~-i~gvD~i~~di~~~~~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~Il~~lf 471 (864)
T TIGR02068 412 KIIGLD-IAGVDIVTEDISRPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVARAIVDMLF 471 (864)
T ss_pred HHhCCC-eEEEEEEecCCCCCccccCcEEEEEcCCcchhhcccccCCCCeeHHHHHHHHhc
Confidence 999985 4459998752 12356899999998865 322222357788888887665
No 109
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=99.57 E-value=2.6e-14 Score=169.58 Aligned_cols=145 Identities=23% Similarity=0.231 Sum_probs=115.6
Q ss_pred CChHHHhhcccCCCCCcccccccCCCceecc-----------------cCCCCeEEEEEEEECCeEEEEEEEecceeecc
Q 000086 1897 CDPRAAICGFLDNNGKWIGGIFDKDSFVETL-----------------EGWARTVVTGRARLGGIPVGIVAVETQTVMQV 1959 (2304)
Q Consensus 1897 yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~-----------------~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~ 1959 (2304)
.++|++|+. |||+|||.|+. ...+.+||+|+|+|+|+||.|+++|++++
T Consensus 6 ltAReRi~~-----------LlD~gSF~E~~g~~~~~~~~~l~~~~~~~~~~dgvV~G~G~I~Gr~v~v~a~D~t~~--- 71 (274)
T TIGR03133 6 ANARERARG-----------LLDAGSFRELLGPFDRVISPHLPRQGIVPQFDDGVVVGRGTIDGKPVVVAAQEGRFQ--- 71 (274)
T ss_pred CCHHHHHHH-----------hcCCCcceEcccccccccCcchhhhcccCCCCCeEEEEEEEECCEEEEEEEECCCcc---
Confidence 478899886 89999999992 12368999999999999999999998877
Q ss_pred ccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhc-----cCCCEEEEecCCCCCCchhhhhhhH--HHHHHHHHH
Q 000086 1960 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNR-----EELPLFILANWRGFSGGQRDLFEGI--LQAGSTIVE 2032 (2304)
Q Consensus 1960 ~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~-----~~lPLv~l~d~~Gf~~G~~~e~~gi--lk~ga~iv~ 2032 (2304)
||++++..+.|++++++.|.+ .++|+|+|.|+.|. .+++++ +-..++++.
T Consensus 72 ------------------GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGa-----RlqEg~~~L~~~a~i~~ 128 (274)
T TIGR03133 72 ------------------GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGV-----RLQEANAGLIAIAEIMR 128 (274)
T ss_pred ------------------CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCc-----ChhhhHHHHHHHHHHHH
Confidence 999999999999999999987 67899999999994 333333 223456666
Q ss_pred HHHcCC--CCEEEEEcCCCc---CCchhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2033 NLRTYK--QPVFVYIPMMAE---LRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2033 al~~~~--vP~i~~I~~~ge---~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
++..++ +|+|++|. |. ++|++|.+.. .|+ ++|.|++++++.+|+-+
T Consensus 129 ~~~~ls~~vP~Isvv~--Gp~gc~GG~a~~a~l----~D~--vim~~~a~i~~aGP~VI 179 (274)
T TIGR03133 129 AILDARAAVPVIGVIG--GRVGCFGGMGIAAGL----CSY--LIMTEEGRLGLSGPEVI 179 (274)
T ss_pred HHHHHhCCCCEEEEEe--CCCCcchHHHHHHhc----CCE--EEEeCCcEEeccCHHHH
Confidence 655544 99999999 44 4555655444 477 88899999999999765
No 110
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.56 E-value=1.8e-14 Score=153.46 Aligned_cols=124 Identities=13% Similarity=0.250 Sum_probs=86.7
Q ss_pred eEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecc-cceEEEEeCceeccccCCCCCeeeeCCCceeEEEEccCC
Q 000086 628 SYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEA-AGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDG 706 (2304)
Q Consensus 628 ~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~-~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~G 706 (2304)
.|+|++||+.|+|+++.+.++.-... ....+...... ..-.-........-....++..|+|||+|+|++|+|++|
T Consensus 4 ~~~itvng~~y~V~vee~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ap~~G~V~~i~V~~G 80 (130)
T PRK06549 4 KFKITIDGKEYLVEMEEIGAPAQAAA---PAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSPMPGTILKVLVAVG 80 (130)
T ss_pred eEEEEECCEEEEEEEEEccCcccccc---ccCccccCCCcccCCccccccCCCCccCCCCCcEEECCCCEEEEEEEeCCC
Confidence 58999999999999988753310000 00000000000 000000000000000223467899999999999999999
Q ss_pred CEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 707 SHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 707 d~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
|.|++||+|++||+|||+++|.||.+|+|..+ +++|+.|..|++|++|
T Consensus 81 d~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 81 DQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 99999999999999999999999999999988 9999999999999987
No 111
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=99.56 E-value=2.7e-14 Score=170.92 Aligned_cols=148 Identities=22% Similarity=0.235 Sum_probs=118.2
Q ss_pred CCChHHHhhcccCCCCCcccccccCCCceecc-c-------C---------CCCeEEEEEEEECCeEEEEEEEecceeec
Q 000086 1896 SCDPRAAICGFLDNNGKWIGGIFDKDSFVETL-E-------G---------WARTVVTGRARLGGIPVGIVAVETQTVMQ 1958 (2304)
Q Consensus 1896 ~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~-~-------~---------~a~~vVtG~arl~G~pVGViA~e~~~~~~ 1958 (2304)
...+|+.|+. |||+|||.|+. + . .+++||||+|+|+|+||.|+|+|++++
T Consensus 14 ~ltARERi~~-----------LlD~gSF~E~~g~~~~~~~~~~~~~~~~~~~~dGvV~G~G~I~Gr~v~v~a~D~tf~-- 80 (301)
T PRK07189 14 EASARERAAA-----------LLDAGSFRELLGPFERVMSPHLPLQGIPPQFDDGVVVGKGTLDGRPVVVAAQEGRFM-- 80 (301)
T ss_pred eCCHHHHHHH-----------hcCCCcceEcccccccccCcchhhhccCCCCCCcEEEEEEEECCEEEEEEEECCCcc--
Confidence 4578999986 89999999992 1 1 257999999999999999999998876
Q ss_pred cccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccC-----CCEEEEecCCCCCCchhhhhhhH--HHHHHHHH
Q 000086 1959 VIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREE-----LPLFILANWRGFSGGQRDLFEGI--LQAGSTIV 2031 (2304)
Q Consensus 1959 ~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~-----lPLv~l~d~~Gf~~G~~~e~~gi--lk~ga~iv 2031 (2304)
||++++.++.|++++++.|.+.+ +|+|+|.|+.|.. ++++. +-.+++++
T Consensus 81 -------------------GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaR-----lqEg~~~L~~~a~i~ 136 (301)
T PRK07189 81 -------------------GGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVR-----LQEANAGLAAIAEIM 136 (301)
T ss_pred -------------------CcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcC-----ccchHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999943 33333 33556777
Q ss_pred HHHHcCC--CCEEEEEcCC-CcCCchhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2032 ENLRTYK--QPVFVYIPMM-AELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2032 ~al~~~~--vP~i~~I~~~-ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
.++..++ +|+|++|... |+.+|++|.+.. .|+ ++|.++|++++.+|+-+
T Consensus 137 ~~~~~ls~~VP~I~vv~G~~gc~GG~a~~a~l----~D~--iIm~~~a~iglaGP~VI 188 (301)
T PRK07189 137 RAIVDLRAAVPVIGLIGGRVGCFGGMGIAAAL----CSY--LIVSEEGRLGLSGPEVI 188 (301)
T ss_pred HHHHHHhCCCCEEEEEcCCCCCcHHHHHHHhc----CCE--EEEECCcEEeccCHHHH
Confidence 6655544 9999999921 155556665433 477 88889999999999655
No 112
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.54 E-value=4.8e-14 Score=161.30 Aligned_cols=185 Identities=21% Similarity=0.320 Sum_probs=108.3
Q ss_pred hcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhcc-CCcEEEeecCCCCCcCeEE
Q 000086 170 LGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGKGIRK 248 (2304)
Q Consensus 170 lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGkGIr~ 248 (2304)
+.||..+.++++++|||+|++.. +.+.+++.++.+++ +||+|+||..|++|+||.+
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~-----------------------~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~ 57 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRV-----------------------TNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFL 57 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEE-----------------------ESSHHHHHHHHHHH--SSEEEE-SB-------EE
T ss_pred CCCHHHHHHHHHHCCcCCCCEEE-----------------------ECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEE
Confidence 36999999999999999999766 67899999999999 8999999999999999999
Q ss_pred ECCHHHHHHHHHHHHhhCCCCcEEEEEecccc--ceeeEEEEEcCCCCEEEeeccccc-cccccceEEEeCCCCCCCHHH
Q 000086 249 VHNDDEVRALFKQVQGEVPGSPIFIMKVASQS--RHLEVQLLCDQYGNVAALHSRDCS-VQRRHQKIIEEGPITVAPLET 325 (2304)
Q Consensus 249 V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~--reieVqvl~D~~G~vi~l~~RdcS-vqrr~qKiieeaPa~~l~~e~ 325 (2304)
+++.+++...++..... ..++++|+|++.. +++.|.++++ +++....|.-. ...|+.- -..+. .-+.++
T Consensus 58 i~~~~~~~~~l~~~~~~--~~~~~~Q~fI~~~~g~d~Rv~Vig~---~vv~a~~r~~~~~d~r~n~-~~g~~--~~~~~l 129 (190)
T PF08443_consen 58 INSPDELESLLDAFKRL--ENPILVQEFIPKDGGRDLRVYVIGG---KVVGAYRRSSPEGDFRTNL-SRGGK--VEPYDL 129 (190)
T ss_dssp EESHCHHHHHHH-------TTT-EEEE----SS---EEEEEETT---EEEEEEE---------------------EE---
T ss_pred ecCHHHHHHHHHHHHhc--cCcceEeccccCCCCcEEEEEEECC---EEEEEEEEecCcccchhhh-ccCce--EEEecC
Confidence 99999999988765422 4688999999865 4888888874 45554433211 1111110 00010 011233
Q ss_pred HHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHH
Q 000086 326 VKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 326 ~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~i 390 (2304)
-+++.+.|.++++++|. ..+.||++-+ ++++||+|+|+.++-. .+|..+|+|+....+..
T Consensus 130 ~~e~~~~a~~~~~~lgl-~~~giDi~~~--~~~~~v~EvN~~~~~~--~~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 130 PEEIKELALKAARALGL-DFAGIDILDT--NDGPYVLEVNPNPGFR--GIEEATGIDIAEEIAEY 189 (190)
T ss_dssp -HHHHHHHHHHHHHTT--SEEEEEEEEE--TTEEEEEEEETT---T--THHHHH---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CEEEEEEEec--CCCeEEEEecCCchHh--HHHHHHCcCHHHHHHhh
Confidence 46788899999999997 5777996655 6789999999988743 46778999999887753
No 113
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.51 E-value=4.2e-14 Score=136.73 Aligned_cols=68 Identities=29% Similarity=0.489 Sum_probs=65.5
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
..|+|||+|+|.+|+|++||+|++||+|+++|+|||+++|+||.+|+|.++ +++|+.|.+|++|++|+
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 359999999999999999999999999999999999999999999999988 99999999999999874
No 114
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.50 E-value=9.3e-14 Score=180.32 Aligned_cols=124 Identities=18% Similarity=0.358 Sum_probs=92.4
Q ss_pred eEEEeeCCeEEEEEEEEecC---C--ceEEEeCCeeEEEEeeecccceEEEEeCceeccccCCCCCeeeeCCCceeEEEE
Q 000086 628 SYTLRMNESEIEAEIHTLRD---G--GLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYL 702 (2304)
Q Consensus 628 ~y~l~ing~~~~V~v~~l~d---g--~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~ 702 (2304)
.|.+..+|+.+.|++...++ | .+.+.+||..+.+.+.+....... .........+++.|.|||||+|++|+
T Consensus 465 e~~v~~~Gk~~~Ikl~~~g~~~~G~r~v~fevng~~r~v~v~d~~~~~~~----~~~~~a~~~~~~~v~apm~G~V~~~~ 540 (596)
T PRK14042 465 EFDIILHGESYHVKVAGYGMIEHGQQSCFLWVDGVPEEVVVQHSELHDKI----ERSSVNNKIGPGDITVAIPGSIIAIH 540 (596)
T ss_pred EEEEEECCEEEEEEEeccccccCCceEEEEEEcCccceeecccccccccc----cccccCCCCCCCeEecCcceEEEEEE
Confidence 34555555555555543221 2 345667887776665543211111 11111234567899999999999999
Q ss_pred ccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 703 VSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 703 V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
|++||.|++||+|++||+|||+++|.||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 541 V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~ 594 (596)
T PRK14042 541 VSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE 594 (596)
T ss_pred eCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEe
Confidence 999999999999999999999999999999999988 99999999999999996
No 115
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=99.46 E-value=3.2e-13 Score=176.75 Aligned_cols=122 Identities=17% Similarity=0.348 Sum_probs=96.8
Q ss_pred eeeEeecCeEEEEEEEeeCC---CeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecccceEEEEeCceecccc
Q 000086 607 QVSLNIEGSKYRIDMVRRGP---GSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQN 683 (2304)
Q Consensus 607 ~vel~~~g~~y~v~v~~~~~---~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~ 683 (2304)
.+++.++|++|.+++...++ ..|.+.+||+..+|.++..+..... ...+
T Consensus 467 ~~~v~i~Gk~~~i~~~~~g~~~~r~~~~~~ng~~~~v~v~d~~~~~~~----------------------------~~~~ 518 (592)
T PRK09282 467 EFKVEVDGEKYEVKIEGVKAEGKRPFYLRVDGMPEEVVVEPLKEIVVG----------------------------GRPR 518 (592)
T ss_pred EEEEEECCEEEEEEEeeccCCCcceEEEEecCceeeeeccCccccccc----------------------------ccCC
Confidence 45666677777777776654 4566666666666665433221100 0245
Q ss_pred CCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 684 ~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
..++..|.|||||+|++|.|++||+|++||+|++||+|||+++|+||.+|+|+++ +++|+.|.+|++|++|++
T Consensus 519 ~~~~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~ 592 (592)
T PRK09282 519 ASAPGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592 (592)
T ss_pred CCCCceEeCCCcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence 6678899999999999999999999999999999999999999999999999888 999999999999999864
No 116
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.44 E-value=2.6e-13 Score=130.80 Aligned_cols=68 Identities=19% Similarity=0.420 Sum_probs=65.8
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
+.|.||+||+|++|.+++||+|++||+|+++|+|||++++.||.+|+|.++ +++|+.|.+|++|++|+
T Consensus 2 ~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 2 TKVYASMAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CeEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 579999999999999999999999999999999999999999999999888 99999999999999985
No 117
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=99.44 E-value=9.4e-13 Score=155.77 Aligned_cols=158 Identities=17% Similarity=0.141 Sum_probs=119.0
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEec--------cccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCch
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDV--------TFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVA 1694 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~--------t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~ 1694 (2304)
+.+||+++..+ +||+|+|++||. +..+|++.+...+|..|++++|.+.++|+|+|.+++|++++..
T Consensus 42 d~~vItG~gri------~Gr~V~via~~~~~~~~d~~~~~~G~~~~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g~~ 115 (256)
T PRK12319 42 DGAVVGGIGYL------AGQPVTVVGIQKGKNLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVG 115 (256)
T ss_pred CCcEEEEEEEE------CCEEEEEEEeccCCccccceeeeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCHh
Confidence 34599999876 999999999865 4689999999999999999999999999999999999999743
Q ss_pred hhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccc-ccccccccc
Q 000086 1695 EEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT-GSGAIAGAY 1773 (2304)
Q Consensus 1695 e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~-~SG~iag~~ 1773 (2304)
.+ ..|....+ . +|+. .|+
T Consensus 116 aE---------------~~G~~~~i------a----------------------------------~~~~~~s~------ 134 (256)
T PRK12319 116 AE---------------ERGQGEAI------A----------------------------------RNLMEMSD------ 134 (256)
T ss_pred HH---------------hccHHHHH------H----------------------------------HHHHHHhC------
Confidence 21 02211100 0 1110 011
Q ss_pred ccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhcccc-----cccccccCcceeecccCceE
Q 000086 1774 SRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREV-----YSSHMQLGGPKIMATNGVVH 1848 (2304)
Q Consensus 1774 s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~v-----y~s~~~lGG~~i~~~nGv~d 1848 (2304)
..+|+||+|+|+|.|||||...++|+++|.+++.+.+.+|...-..+=++. -....++ ++.-+.+.|++|
T Consensus 135 ----~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v~~pe~~a~il~~~~~~a~~aa~~~~~-~a~~l~~~g~iD 209 (256)
T PRK12319 135 ----LKVPIIAIIIGEGGSGGALALAVADQVWMLENTMYAVLSPEGFASILWKDGSRATEAAELMKI-TAGELLEMGVVD 209 (256)
T ss_pred ----CCCCEEEEEeCCcCcHHHHHhhcCCEEEEecCceEEEcCHHHHHHHHhcCcccHHHHHHHcCC-CHHHHHHCCCCc
Confidence 127999999999999999999999999999999999999987766553321 0011233 445566899999
Q ss_pred EEec
Q 000086 1849 LTVS 1852 (2304)
Q Consensus 1849 ~~v~ 1852 (2304)
-+++
T Consensus 210 ~ii~ 213 (256)
T PRK12319 210 KVIP 213 (256)
T ss_pred EecC
Confidence 9985
No 118
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.43 E-value=2.1e-13 Score=132.91 Aligned_cols=66 Identities=29% Similarity=0.577 Sum_probs=63.5
Q ss_pred eeeeCCCceeEE------EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 689 KLVAETPCKLLR------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 689 ~l~APmPGkvv~------~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
.|++|++|++.+ |+|++||.|++||+|++||+|||+++|.||.+|+|+++ +++|+.|..|++|++|
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 689999999887 99999999999999999999999999999999999999 8899999999999986
No 119
>PRK06748 hypothetical protein; Validated
Probab=99.42 E-value=4.8e-13 Score=131.86 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=64.6
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEcc-ccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM-KMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM-Km~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
.|+|||||+|++|+|++||.|++||+|++||+| |+.++|.||.+|+|+.+ +++|+.|..|++|++|+.+
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~~ 76 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRDD 76 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEECC
Confidence 589999999999999999999999999999996 56679999999999988 9999999999999999643
No 120
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=99.39 E-value=1.7e-12 Score=166.32 Aligned_cols=158 Identities=13% Similarity=0.087 Sum_probs=120.5
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccc--------cCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCch
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTF--------KAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVA 1694 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~--------~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~ 1694 (2304)
+.+||+|+.++ +||+|+|++||+++ .+|+..+...+|..|++++|.+.++|+|+|.|++||+++..
T Consensus 186 D~aIVtGlGRI------dGrpV~VIAndkg~~tke~~~rnfG~~~peGyRKAlRlmkLAekfgLPIVtLVDTpGA~pG~~ 259 (762)
T PLN03229 186 DPAIVTGIGTI------DGKRYMFIGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLK 259 (762)
T ss_pred CCCeEEEEEEE------CCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCch
Confidence 34799999886 99999999999974 89999999999999999999999999999999999999844
Q ss_pred hhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccc--cccccccc
Q 000086 1695 EEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT--GSGAIAGA 1772 (2304)
Q Consensus 1695 e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~--~SG~iag~ 1772 (2304)
.+.. |.+. .. .+|+. .++
T Consensus 260 AEe~---------------Gq~~------aI----------------------------------Arnl~amasl----- 279 (762)
T PLN03229 260 SEEL---------------GQGE------AI----------------------------------AHNLRTMFGL----- 279 (762)
T ss_pred hHHH---------------hHHH------HH----------------------------------HHHHHHHhCC-----
Confidence 2211 1100 00 01111 111
Q ss_pred cccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhcccccccc---cccC-cceeecccCceE
Q 000086 1773 YSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSH---MQLG-GPKIMATNGVVH 1848 (2304)
Q Consensus 1773 ~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~---~~lG-G~~i~~~nGv~d 1848 (2304)
.+|+||+|+|+|.|||||...++|+++|.+++.+++.||..--..+-++.-..+ +.++ +++=+...|++|
T Consensus 280 ------~VP~ISVViGeggSGGAlA~g~aD~VlMle~A~~sVisPEgaAsILwkd~~~A~eAAe~lkiTa~dL~~lGiiD 353 (762)
T PLN03229 280 ------KVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKAAPKAAEKLRITAQELCRLQIAD 353 (762)
T ss_pred ------CCCEEEEEeCCcchHHHHHhhcCCEEEEecCCeEEecCHHHHHHHHhcCcccHHHHHHHcCCCHHHHHhCCCCe
Confidence 279999999999999999999999999999999999999988777655431111 1111 112245799999
Q ss_pred EEec
Q 000086 1849 LTVS 1852 (2304)
Q Consensus 1849 ~~v~ 1852 (2304)
-|++
T Consensus 354 ~IIp 357 (762)
T PLN03229 354 GIIP 357 (762)
T ss_pred eecc
Confidence 9886
No 121
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=99.39 E-value=1.9e-12 Score=167.32 Aligned_cols=199 Identities=17% Similarity=0.226 Sum_probs=145.8
Q ss_pred CcCccccccccccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHH
Q 000086 1590 DKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAV 1669 (2304)
Q Consensus 1590 ~~~~~~~~el~~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra 1669 (2304)
|-++.+..+.++|+ + .|.|+....| .+||++..++ +||+|.|+|||+|+++|++++...+|..|+
T Consensus 278 ~~d~r~~i~~l~D~--~----sf~El~~~~g---~~vVtG~gri------~G~~V~vvAnd~~~~~G~~~~~~~~K~~r~ 342 (512)
T TIGR01117 278 PYDMRDVITAIVDN--G----DYLEVQPYYA---PNIITCFARI------NGQSVGIIANQPKVMAGCLDIDSSDKIARF 342 (512)
T ss_pred CCCHHHHHHHhCCC--C----ceEEeeccCC---CcEEEEEEEE------CCEEEEEEEeccccccCCCCHHHHHHHHHH
Confidence 34455666677776 4 5888776665 5599999876 999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEE
Q 000086 1670 TDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVD 1749 (2304)
Q Consensus 1670 ~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~ 1749 (2304)
+++|.+.++|+|+|.+++|+..+...|-...++ ...++ + .
T Consensus 343 i~~a~~~~lPlV~lvDs~G~~~g~~~E~~g~~~---------------------~~a~~---~-----~----------- 382 (512)
T TIGR01117 343 IRFCDAFNIPIVTFVDVPGFLPGVNQEYGGIIR---------------------HGAKV---L-----Y----------- 382 (512)
T ss_pred HHHHHHcCCCEEEEEeCcCccccHHHHHHHHHH---------------------HHHHH---H-----H-----------
Confidence 999999999999999999996653322100000 00000 0 0
Q ss_pred eeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcc-----cCEEEEecCcceEecChHHHHHhh
Q 000086 1750 SIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARL-----GMRCIQRLDQPIILTGFSALNKLL 1824 (2304)
Q Consensus 1750 ~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~l-----gd~~I~~~~~~i~ltG~~al~~~l 1824 (2304)
+++. ..+|+||+|+|++.|+ ||+++. +|++++.+++.+++.||...-+++
T Consensus 383 ----------------------a~~~--~~vP~isvi~g~~~Gg-a~~am~~~~~~~d~~~a~p~a~~~v~~pe~a~~i~ 437 (512)
T TIGR01117 383 ----------------------AYSE--ATVPKVTIITRKAYGG-AYLAMCSKHLGADQVYAWPTAEIAVMGPAGAANII 437 (512)
T ss_pred ----------------------HHHh--CCCCEEEEEcCCCchH-HHHHhccccCCCCEEEEcCCCeEeecCHHHHHHHH
Confidence 0011 1379999999999776 788886 899999999999999998754433
Q ss_pred -cccccc--------------cccccCcceeecccCceEEEecCcHHHHHHHHHHHhcCC
Q 000086 1825 -GREVYS--------------SHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVP 1869 (2304)
Q Consensus 1825 -G~~vy~--------------s~~~lGG~~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP 1869 (2304)
.+++.. -.++++.+......|.+|-|+ |-.+--..+.+||..+-
T Consensus 438 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI-~P~~tR~~l~~~l~~~~ 496 (512)
T TIGR01117 438 FRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVI-EPKQTRPKIVNALAMLE 496 (512)
T ss_pred hhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeE-ChHHHHHHHHHHHHHHh
Confidence 222110 012355666667899999999 57888888888888764
No 122
>PRK12458 glutathione synthetase; Provisional
Probab=99.39 E-value=1e-11 Score=154.05 Aligned_cols=218 Identities=10% Similarity=0.045 Sum_probs=141.6
Q ss_pred CCCEEEeC--CCcCCCCCchHHHH-----------HHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccC
Q 000086 131 RVDAVWPG--WGHASEIPELPDTL-----------STKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKI 197 (2304)
Q Consensus 131 ~vDaV~pG--~G~~SEn~~la~~l-----------~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~ 197 (2304)
.+|+||+- +.+..+ +...+ +..|+.++ +++++++.+.||..+..+++ +++|++..
T Consensus 79 ~~d~V~~R~~~~~~~~---~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~v----- 146 (338)
T PRK12458 79 GFDVIFLRANPPLDPL---ARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTHI----- 146 (338)
T ss_pred hCCEEEEeCCCCCChH---HHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEEE-----
Confidence 47999984 333222 22222 34687776 99999999999999987666 66777544
Q ss_pred CCCCcccccCcccccccccCCHHHHHHHhhccCCc-EEEeecCCCCCcCeEEECCHHH--HHHHHHHHHhhCCCCcEEEE
Q 000086 198 PPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGKGIRKVHNDDE--VRALFKQVQGEVPGSPIFIM 274 (2304)
Q Consensus 198 ~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGkGIr~V~s~eE--L~~a~~~~~~e~~~~~i~VE 274 (2304)
..+.+++.++.++.|+| +|+||..|.||+||+++++.++ +...++.... ..++++|
T Consensus 147 ------------------~~~~~~~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~---~~~~ivQ 205 (338)
T PRK12458 147 ------------------SRNKEYIREFLEESPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG---DGYVIAQ 205 (338)
T ss_pred ------------------eCCHHHHHHHHHHcCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh---CCCEEEE
Confidence 45678888888888765 9999999999999999987664 5555554432 3589999
Q ss_pred EeccccceeeEEEEEcCCCCEE------Eeecccccc-ccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHC---Ccee
Q 000086 275 KVASQSRHLEVQLLCDQYGNVA------ALHSRDCSV-QRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCV---NYVG 344 (2304)
Q Consensus 275 eyI~g~reieVqvl~D~~G~vi------~l~~RdcSv-qrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakal---Gy~G 344 (2304)
+|+++..+.++.++.= .|+++ +...|...- ..|.. +..+ ......++-+++.+.|.+++..+ |+ .
T Consensus 206 eyI~~~~~gDiRv~vv-~g~~v~~~g~~~a~~R~~~~~d~RsN--~~~G-g~~~~~~l~~~~~~ia~~~~~~l~~~GL-~ 280 (338)
T PRK12458 206 EYLPGAEEGDVRILLL-NGEPLERDGHYAAMRRVPAGGDVRSN--VHAG-GSVVKHTLTKEELELCEAIRPKLVRDGL-F 280 (338)
T ss_pred EcccCCCCCCEEEEEE-CCEEEeeccceeEEEEecCCCCeeec--ccCC-CcccCcCCCHHHHHHHHHHHHHHhhcCC-e
Confidence 9998644344444421 24566 433332100 00000 0000 01111223355666677776655 54 3
Q ss_pred eeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHc
Q 000086 345 AATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGM 392 (2304)
Q Consensus 345 a~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~ 392 (2304)
.+.||++- .+++|||++-.+..+-.+.++|+|+....++...
T Consensus 281 ~~gVDli~------~~l~EIN~~sp~g~~~~~~~~g~d~a~~i~~~i~ 322 (338)
T PRK12458 281 FVGLDIVG------DKLVEVNVFSPGGLTRINKLNKIDFVEDIIEALE 322 (338)
T ss_pred EEeEEEEC------CEEEEEeCCCcchHHHHHHHhCCCHHHHHHHHHH
Confidence 56688872 2689999998877777788899999999988653
No 123
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=99.38 E-value=1.9e-12 Score=155.91 Aligned_cols=169 Identities=18% Similarity=0.140 Sum_probs=125.3
Q ss_pred ccccccCCC-CCceEEEEEEEeecCcccCCCcEEEEEEEecc--------ccCCCcchHHHHHHHHHHHHHHHcCCCEEE
Q 000086 1612 LVLVERSPG-LNNIGMVAWCMEMFTPEFPSGRTILIVANDVT--------FKAGSFGPREDAFFLAVTDLACAKKLPLIY 1682 (2304)
Q Consensus 1612 l~e~~r~~g-~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t--------~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~ 1682 (2304)
|.|+...-+ ..+.+||+|+.++ +||+|+|++||.+ ..+|++++...+|..|++++|.+.++|+|+
T Consensus 86 f~El~gd~~~~dd~avV~Glgri------~GrpV~VIa~dkg~~~~e~~~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIIt 159 (322)
T CHL00198 86 WIELHGDRGGSDDPALVGGIGKI------NGRTIVFLGHQRGRNTKENVLRNFGMPSPGGYRKALRLMKHANKFGLPILT 159 (322)
T ss_pred HHHHccccccCCCCceEEEEEEE------CCEEEEEEEecCCccchhhhhhcCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 555554432 3457899999886 9999999999995 589999999999999999999999999999
Q ss_pred EEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccc
Q 000086 1683 LAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVEN 1762 (2304)
Q Consensus 1683 l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~ 1762 (2304)
|.|++||+++...+- .|.... . .+|
T Consensus 160 lvDTpGA~~G~~AE~---------------~G~~~a------i----------------------------------ar~ 184 (322)
T CHL00198 160 FIDTPGAWAGVKAEK---------------LGQGEA------I----------------------------------AVN 184 (322)
T ss_pred EEeCCCcCcCHHHHH---------------HhHHHH------H----------------------------------HHH
Confidence 999999999843211 111000 0 011
Q ss_pred cc--cccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhccccccc---ccccC-
Q 000086 1763 LT--GSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSS---HMQLG- 1836 (2304)
Q Consensus 1763 l~--~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s---~~~lG- 1836 (2304)
+. .++ .+|+||+|+|++.|||||...++|+++|.+++.+.+.+|..--..+-++.-.. .+.++
T Consensus 185 l~~~a~~-----------~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~sVisPEg~a~Il~~d~~~a~~aA~~~~i 253 (322)
T CHL00198 185 LREMFSF-----------EVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTVATPEACAAILWKDSKKSLDAAEALKI 253 (322)
T ss_pred HHHHHcC-----------CCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEecCHHHHHHHHhcchhhHHHHHHHcCC
Confidence 10 112 27999999999999999999999999999999999999987777665543000 01111
Q ss_pred cceeecccCceEEEec
Q 000086 1837 GPKIMATNGVVHLTVS 1852 (2304)
Q Consensus 1837 G~~i~~~nGv~d~~v~ 1852 (2304)
+++=+.+.|++|-+++
T Consensus 254 ta~dL~~~giiD~ii~ 269 (322)
T CHL00198 254 TSEDLKVLGIIDEIIP 269 (322)
T ss_pred CHHHHHhCCCCeEecc
Confidence 1122357999999985
No 124
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=99.36 E-value=5.7e-12 Score=163.25 Aligned_cols=148 Identities=23% Similarity=0.204 Sum_probs=117.3
Q ss_pred CChHHHhhcccCCCCCcccccccCCCceecccC-------------CCCeEEEEEEEECCeEEEEEEEecceeeccccCC
Q 000086 1897 CDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG-------------WARTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1963 (2304)
Q Consensus 1897 yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~-------------~a~~vVtG~arl~G~pVGViA~e~~~~~~~~pad 1963 (2304)
..+|+.|+. |||+|||.|+... .+.+||||+|+|+|+||.|+++|+++.
T Consensus 8 ~~areRi~~-----------L~D~gSF~E~~~~~~~~~~~~~~~~~p~~gvvtG~G~I~G~~v~v~a~D~t~~------- 69 (493)
T PF01039_consen 8 LTARERIDL-----------LLDPGSFRELGDLAGAARYKFGREKTPGDGVVTGIGKINGRPVVVIAQDFTVL------- 69 (493)
T ss_dssp EEHHHHHHH-----------HSGTTEBEEESTTHHTTHCGGGGGH-TTTTEEEEEEEETTEEEEEEEEETTSG-------
T ss_pred cCHHHHHHH-----------hcCCCCCcCchHHHhccccccccccCCCCcEEEEEEeeCCeeEEEEEecccee-------
Confidence 467888886 8999999998532 467999999999999999999998766
Q ss_pred CCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHH--HHHHHHHHHHHcC--CC
Q 000086 1964 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGIL--QAGSTIVENLRTY--KQ 2039 (2304)
Q Consensus 1964 pa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gil--k~ga~iv~al~~~--~v 2039 (2304)
||++++..++|+.++++.|.+.++|+|.|.|+.|. .+ .|++++. ...++++.+++.+ .+
T Consensus 70 --------------gGs~g~~~~~Ki~ra~~~A~~~~~P~v~l~dsgGa-~~--r~~eg~~~l~~~g~i~~~~~~~~~~i 132 (493)
T PF01039_consen 70 --------------GGSVGEVHGEKIARAIELALENGLPLVYLVDSGGA-FL--RMQEGVESLMGMGRIFRAIARLSGGI 132 (493)
T ss_dssp --------------GGTBSHHHHHHHHHHHHHHHHHTEEEEEEEEESSB-CG--GGGGHHHHHHHHHHHHHHHHHHHTTS
T ss_pred --------------cCCCCcccceeeehHHHHHHHcCCCcEEecccccc-cc--ccchhhhhhhhhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999996 33 4444443 3455555554332 79
Q ss_pred CEEEEEcCCCcCCchhhhhcccccCCccceeecccC-cEEEeeCccch
Q 000086 2040 PVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEGM 2086 (2304)
Q Consensus 2040 P~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~-A~~gvl~Peg~ 2086 (2304)
|+|++|. +.+.+||||.+.-+ |+ +++.++ +++++.+|.-+
T Consensus 133 P~I~vv~-G~~~Gg~A~~~~~~----d~--~i~~~~~a~i~l~GP~vv 173 (493)
T PF01039_consen 133 PQISVVT-GPCTGGGAYLAALS----DF--VIMVKGTARIFLAGPRVV 173 (493)
T ss_dssp -EEEEEE-SEEEGGGGHHHHHS----SE--EEEETTTCEEESSTHHHH
T ss_pred CeEEEEc-cccccchhhccccc----Cc--cccCccceEEEecccccc
Confidence 9999999 45555588876653 66 777776 99999999654
No 125
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.35 E-value=1.2e-11 Score=163.53 Aligned_cols=198 Identities=18% Similarity=0.143 Sum_probs=142.3
Q ss_pred CCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhcc-CCcEEEeecCC
Q 000086 162 PPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWG 240 (2304)
Q Consensus 162 Ps~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~G 240 (2304)
.+..++..|.||..+|++++++|||+|+|.. +.+.+++.+....+ ||||||||..|
T Consensus 465 tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~~-----------------------~~~~~~a~~~~~~~~g~PVVVKP~~g 521 (737)
T TIGR01435 465 DNYVSPLIMENKVVTKKVLAEAGFRVPFGDE-----------------------FSSQALALEAFSLFENKAIVVKPKST 521 (737)
T ss_pred ccHHHHHHhcCHHHHHHHHHHcCcCCCCEEE-----------------------ECCHHHHHHHHHHhcCCCEEEeeCCC
Confidence 5778899999999999999999999999765 56677777666666 79999999999
Q ss_pred CCCcCeEEECC---HHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeecccc---------ccc--
Q 000086 241 GGGKGIRKVHN---DDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDC---------SVQ-- 306 (2304)
Q Consensus 241 gGGkGIr~V~s---~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~Rdc---------Svq-- 306 (2304)
++|+||.++.+ .+++.+++..+... +..++||+|++| +|+.|-|+.+ ++++...|.. +++
T Consensus 522 ~~G~GVsi~~~~~~~eel~~Al~~A~~~--~~~VLVEefI~G-~EyRv~VIg~---kvvaa~~R~Pa~ViGDG~~TI~eL 595 (737)
T TIGR01435 522 NYGLGITIFKNGFTLEDFQEALNIAFSE--DSSVIIEEFLPG-TEYRFFVLND---KVEAVLLRVPANVTGDGIHTVREL 595 (737)
T ss_pred CCcCCeEEecCcCCHHHHHHHHHHHHhc--CCeEEEEecccC-CEEEEEEECC---eEEEEEEECCCCEEECCHHHHHHH
Confidence 99999999876 88999999877644 467999999986 8999988864 3444332221 110
Q ss_pred --------cc---cc----eEE---------------Ee-------------------CCCCCCCHHHHHHHHHHHHHHH
Q 000086 307 --------RR---HQ----KII---------------EE-------------------GPITVAPLETVKKLEQAARRLA 337 (2304)
Q Consensus 307 --------rr---~q----Kii---------------ee-------------------aPa~~l~~e~~~~m~e~A~rla 337 (2304)
+| |. ||. +. +-+..+++++.+...+.|++++
T Consensus 596 I~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa 675 (737)
T TIGR01435 596 VAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIA 675 (737)
T ss_pred HHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHH
Confidence 01 11 110 00 1122355677889999999999
Q ss_pred HHCCceeeeEEEEEEEccC-------CcEEEEEeccCCCCC-cceehhhhcCCHHHHHHH
Q 000086 338 KCVNYVGAATVEYLYSMET-------GEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVA 389 (2304)
Q Consensus 338 kalGy~Ga~tVEfl~d~~~-------g~~yfLEINpRlqge-hpvtE~vtGVDL~~~qL~ 389 (2304)
+++|.. .+.||++...-+ ..+.|||+|++++-. |..--.-.+-|+....+.
T Consensus 676 ~algl~-i~GVDii~~di~~p~~~~~~~~~iiEvN~~P~l~mH~~P~~G~~r~v~~~ild 734 (737)
T TIGR01435 676 TAVGAA-ICGVDLIIPDETIPDTDKHAIWGVIEANFNPAMHMHCFPYAGEKRRLTDKVIK 734 (737)
T ss_pred HhcCCC-EEEEEEEecCCCCCccccccceEEEEEcCCcchhhhcCCCCCCCcchHHHHHH
Confidence 999997 888999985211 236799999999864 322222345566655554
No 126
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.34 E-value=2.1e-12 Score=168.66 Aligned_cols=111 Identities=18% Similarity=0.313 Sum_probs=84.6
Q ss_pred CCCeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecccceEEEEeCceeccccCCCCCeeeeCCCceeEEEEcc
Q 000086 625 GPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVS 704 (2304)
Q Consensus 625 ~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~ 704 (2304)
+...|++.+||+.++|.|...+. ........ . .... + ........+++.|.|||||+|++|+|+
T Consensus 471 g~~~~~~~vnG~~~~V~v~d~~~---~~~~~~~~--~---~~~~-------~-~~~~a~~~~~~~v~ap~~G~v~~~~V~ 534 (582)
T TIGR01108 471 ASGSYTVEVEGKAFVVKVSPGGD---VSQITASA--P---ANTS-------G-GTVAAKAGAGTPVTAPIAGSIVKVKVS 534 (582)
T ss_pred CceEEEEEECCEEEEEEEcCCcc---cccccccc--c---cccc-------c-ccccCCCCCCCeEeCCccEEEEEEEeC
Confidence 45679999999999999864321 11100000 0 0000 0 011123467889999999999999999
Q ss_pred CCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEE
Q 000086 705 DGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELI 751 (2304)
Q Consensus 705 ~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~L 751 (2304)
+||.|++||+|++||+|||+++|.||.+|+|+.+ +++|+.|+.|++|
T Consensus 535 ~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 535 EGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 9999999999999999999999999999999988 9999999999975
No 127
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.33 E-value=3.4e-11 Score=161.90 Aligned_cols=250 Identities=16% Similarity=0.111 Sum_probs=164.9
Q ss_pred cEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHH-------CCCeEECCCHHHHHHhcCHHH
Q 000086 103 DQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLST-------KGIIFLGPPATSMAALGDKIG 175 (2304)
Q Consensus 103 De~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~-------~GI~fiGPs~eam~~lgDK~~ 175 (2304)
+..+.++|..+. -.+...|++.|++.++...+-.-+ + .+...... .+...-..+..++..+.||..
T Consensus 419 ~~~~~L~g~~~~--~~sT~~li~aA~~rGi~v~~ld~~---~--~~l~l~~g~~~~~v~~~~~t~~~s~~s~~~~~DK~~ 491 (752)
T PRK02471 419 ERPYALKGYEDM--ELSTQILLFDAIQRGIQVEILDEQ---D--QFLKLQKGDHVEYVKNGNMTSKDNYISPLIMENKVV 491 (752)
T ss_pred cCccccCCcccC--ChhHHHHHHHHHHCCCeEEEEcCC---c--ceehhccCCCeeEEEeccccCCCHHHHHHHhhCHHH
Confidence 334556665542 234678999999999887764311 0 11111111 111122245557888899999
Q ss_pred HHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhc-cCCcEEEeecCCCCCcCeEEE---CC
Q 000086 176 SSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQV-VGYPAMIKASWGGGGKGIRKV---HN 251 (2304)
Q Consensus 176 sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~-IGyPVVIKPs~GgGGkGIr~V---~s 251 (2304)
++++++++|||+|++.. +.+.+++.+...+ .||||||||..|++|+||.++ ++
T Consensus 492 tk~lL~~~GIpvP~~~~-----------------------~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~ 548 (752)
T PRK02471 492 TKKILAEAGFPVPAGDE-----------------------FTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPAS 548 (752)
T ss_pred HHHHHHHCCcCCCCEEE-----------------------EcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCC
Confidence 99999999999999765 5677888777766 489999999999999999986 56
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeecccc---------ccc----------cc---c
Q 000086 252 DDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDC---------SVQ----------RR---H 309 (2304)
Q Consensus 252 ~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~Rdc---------Svq----------rr---~ 309 (2304)
.+++.+++..+... +..++||||++| +++.|-++. |+++....|.. +++ +| |
T Consensus 549 ~eel~~A~~~a~~~--~~~vlVEEfI~G-~E~Rv~Vig---gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~ 622 (752)
T PRK02471 549 LEDYEKALEIAFRE--DSSVLVEEFIVG-TEYRFFVLD---GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDH 622 (752)
T ss_pred HHHHHHHHHHHHhc--CCcEEEEecccC-CEEEEEEEC---CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcc
Confidence 89999999887643 467999999976 899998874 34554443322 110 00 1
Q ss_pred ceE---EE--e----------------------------------CCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEE
Q 000086 310 QKI---IE--E----------------------------------GPITVAPLETVKKLEQAARRLAKCVNYVGAATVEY 350 (2304)
Q Consensus 310 qKi---ie--e----------------------------------aPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEf 350 (2304)
.+. |. + +-+..++..+.+...+.|+++++++|.. .+.||+
T Consensus 623 ~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDi 701 (752)
T PRK02471 623 RTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDL 701 (752)
T ss_pred cccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEE
Confidence 100 00 0 0122355678889999999999999987 444999
Q ss_pred EEEccC-----C--cEEEEEeccCCCCC-cceehhhhcCCHHHHHHH
Q 000086 351 LYSMET-----G--EYYFLELNPRLQVE-HPVTEWIAEINLPAAQVA 389 (2304)
Q Consensus 351 l~d~~~-----g--~~yfLEINpRlqge-hpvtE~vtGVDL~~~qL~ 389 (2304)
+...-+ . ++.|||+|++++-. |..--.-...|+.+..+.
T Consensus 702 i~~di~~p~~~~~~~~~IiEvN~~P~l~mH~~P~~G~~r~v~~~i~d 748 (752)
T PRK02471 702 IIPDLTQPASPEHPNYGIIELNFNPAMYMHCFPYKGKGRRITPKILD 748 (752)
T ss_pred EeCCCcccccccCCCeEEEEecCCCchhhccCccCCCCcchHHHHHH
Confidence 986311 2 68899999999854 322111234455555554
No 128
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.32 E-value=1.6e-11 Score=139.72 Aligned_cols=191 Identities=18% Similarity=0.156 Sum_probs=137.7
Q ss_pred HHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhc
Q 000086 149 PDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQV 228 (2304)
Q Consensus 149 a~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~ 228 (2304)
-+..++. ...+|+++++++.|.||+.++..++.+ |++|+++. ...
T Consensus 92 tri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e---------------------------------~~~ 136 (307)
T COG1821 92 TRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTRE---------------------------------WAE 136 (307)
T ss_pred HHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCccc---------------------------------ccc
Confidence 3555555 667899999999999999999999999 99998653 001
Q ss_pred cCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccc
Q 000086 229 VGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR 308 (2304)
Q Consensus 229 IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr 308 (2304)
.+--.||||.+|.||.|+....+..++ .++|+||+| .|++|.+.....-.++++...+.-+ .
T Consensus 137 ~~~k~ViKp~dgCgge~i~~~~~~pd~---------------~i~qEfIeG-~~lSVSL~~GEkv~pLsvNrQfi~~--~ 198 (307)
T COG1821 137 EPKKYVIKPADGCGGEGILFGRDFPDI---------------EIAQEFIEG-EHLSVSLSVGEKVLPLSVNRQFIIF--A 198 (307)
T ss_pred CCceEEecccccCCcceeeccCCCcch---------------hhHHHhcCC-cceEEEEecCCccccceechhhhhh--c
Confidence 123479999999999999998887663 477899987 7999994443322333332111111 0
Q ss_pred cceE-EEeCCCCCCCHHHHHHHHHHHHHHHHHCC-ceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHH
Q 000086 309 HQKI-IEEGPITVAPLETVKKLEQAARRLAKCVN-YVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAA 386 (2304)
Q Consensus 309 ~qKi-ieeaPa~~l~~e~~~~m~e~A~rlakalG-y~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~ 386 (2304)
..++ ...++.+ .+.++.+++.+.|++.++.++ ++|...||+.+. +++|++|||||+.-..--...+++-++.++
T Consensus 199 ~~~~~y~gg~~p-i~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls---D~pYvIEINpR~TTp~vg~sr~~~~sv~~L 274 (307)
T COG1821 199 GSELVYNGGRTP-IDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS---DEPYVIEINPRPTTPTVGLSRVTPESVAEL 274 (307)
T ss_pred cceeeeccCcCC-CCcHHHHHHHHHHHHHHHhhccccceeeEEEEec---CCcEEEEecCCCCcceeeeeccccHHHHHH
Confidence 1111 2234555 566899999999999999995 899999999996 689999999999765433445677777777
Q ss_pred HHHHHcCCCC
Q 000086 387 QVAVGMGIPL 396 (2304)
Q Consensus 387 qL~iA~G~pL 396 (2304)
.+.-..|.-+
T Consensus 275 Ll~~~~g~~~ 284 (307)
T COG1821 275 LLEGPTGKVL 284 (307)
T ss_pred HhcCcccccc
Confidence 7766666543
No 129
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.31 E-value=6.3e-12 Score=164.35 Aligned_cols=117 Identities=15% Similarity=0.221 Sum_probs=87.5
Q ss_pred CCCeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecccceEEEEeCceeccccCCCCCeeeeCCCceeEEEEcc
Q 000086 625 GPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVS 704 (2304)
Q Consensus 625 ~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~ 704 (2304)
+...|.+.+||+.+.|.|...++ -..+...+....... .....+...++..|.|||||+|++|+|+
T Consensus 476 g~~~~~~~vnG~~~~V~v~~~~~-~~~~~~~~~~~~~~~-------------~~~~a~~~~~~~~V~Ap~~G~I~~~~V~ 541 (593)
T PRK14040 476 GSETYTVEVEGKAYVVKVSEGGD-ISQITPAAPAAAPAA-------------AAAAAPAAAAGEPVTAPLAGNIFKVIVT 541 (593)
T ss_pred CCeEEEEEECCEEEEEEECCCCc-ccccccccccccccc-------------ccccccCCCCCceEECCccEEEEEEEeC
Confidence 55678999999999998853210 001111111111000 0000112345678999999999999999
Q ss_pred CCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 705 DGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 705 ~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
+||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|++|.
T Consensus 542 ~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 542 EGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred CCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 9999999999999999999999999999999988 99999999999999873
No 130
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=99.31 E-value=1.6e-11 Score=148.11 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=120.9
Q ss_pred CceEEEEEEEeecCcccCCCcEEEEEEEecc--------ccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCc
Q 000086 1622 NNIGMVAWCMEMFTPEFPSGRTILIVANDVT--------FKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGV 1693 (2304)
Q Consensus 1622 n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t--------~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~ 1693 (2304)
.+.+||+++.++ +||+|+|++||.. ..+|+.++...+|..|++++|.+.++|+|+|.+++||+++.
T Consensus 94 dd~aiVtG~ari------~GrpV~VIa~d~g~~~~e~~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~g~ 167 (316)
T TIGR00513 94 DDKAIVGGIARL------DGRPVVVIGHQKGRDTKEKLRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGAYPGI 167 (316)
T ss_pred CCCceEEEEEEE------CCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCH
Confidence 356799999876 9999999999984 68899999999999999999999999999999999999984
Q ss_pred hhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccc-cccccccc
Q 000086 1694 AEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT-GSGAIAGA 1772 (2304)
Q Consensus 1694 ~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~-~SG~iag~ 1772 (2304)
..+-. |... ... +|+. .++
T Consensus 168 ~aE~~---------------G~~~------aia----------------------------------~~l~a~s~----- 187 (316)
T TIGR00513 168 GAEER---------------GQSE------AIA----------------------------------RNLREMAR----- 187 (316)
T ss_pred HHHHH---------------HHHH------HHH----------------------------------HHHHHHHc-----
Confidence 32211 1000 000 1110 000
Q ss_pred cccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhccccccc---ccccC-cceeecccCceE
Q 000086 1773 YSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSS---HMQLG-GPKIMATNGVVH 1848 (2304)
Q Consensus 1773 ~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s---~~~lG-G~~i~~~nGv~d 1848 (2304)
..+|+||+|+|+|.|||||...++|+++|.+++.+.+.+|..--..+-++.-.. .+.++ +++-+...|++|
T Consensus 188 -----~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~sVisPEg~a~Il~kd~~~a~~aae~~~~ta~~l~~~G~iD 262 (316)
T TIGR00513 188 -----LGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYSVISPEGCAAILWKDASKAPKAAEAMKITAPDLKELGLID 262 (316)
T ss_pred -----CCCCEEEEEecccccHHHhhhccCCEEEEecCceEEecCHHHHHHHhccchhhHHHHHHHccCCHHHHHHCCCCe
Confidence 127999999999999999999999999999999999999987766655432000 11122 355566899999
Q ss_pred EEec
Q 000086 1849 LTVS 1852 (2304)
Q Consensus 1849 ~~v~ 1852 (2304)
-|++
T Consensus 263 ~II~ 266 (316)
T TIGR00513 263 SIIP 266 (316)
T ss_pred Eecc
Confidence 9986
No 131
>PRK07051 hypothetical protein; Validated
Probab=99.28 E-value=8.5e-12 Score=123.54 Aligned_cols=68 Identities=25% Similarity=0.406 Sum_probs=65.5
Q ss_pred CeeeeCCCceeEE-------EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 688 SKLVAETPCKLLR-------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 688 ~~l~APmPGkvv~-------~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
..++||+||++++ ++|++||.|++||+++++|+|||+++|+||.+|+|.++ +++|+.|..|++|++|+
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 4689999999999 99999999999999999999999999999999999888 99999999999999985
No 132
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=99.27 E-value=3.9e-11 Score=144.93 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=120.3
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEecc--------ccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCch
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVT--------FKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVA 1694 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t--------~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~ 1694 (2304)
+.+||+++.++ +||+|+|+|||.+ +.+|++.+...+|..|++++|.+.++|+|+|.+++||+++..
T Consensus 95 d~aiV~G~ari------~GrpV~VIa~d~g~~~~e~~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDTpGa~~G~~ 168 (319)
T PRK05724 95 DKAIVGGLARL------NGRPVMVIGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGAYPGIG 168 (319)
T ss_pred CCceEEEEEEE------CCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCHH
Confidence 45799999887 9999999999994 689999999999999999999999999999999999999843
Q ss_pred hhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccc-ccccccccc
Q 000086 1695 EEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT-GSGAIAGAY 1773 (2304)
Q Consensus 1695 e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~-~SG~iag~~ 1773 (2304)
.+- .|... ... .|+. .+.
T Consensus 169 aE~---------------~G~~~------aia----------------------------------~~l~~~a~------ 187 (319)
T PRK05724 169 AEE---------------RGQSE------AIA----------------------------------RNLREMAR------ 187 (319)
T ss_pred HHh---------------ccHHH------HHH----------------------------------HHHHHHhC------
Confidence 220 11100 000 0111 000
Q ss_pred ccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhcccc-----cccccccCcceeecccCceE
Q 000086 1774 SRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREV-----YSSHMQLGGPKIMATNGVVH 1848 (2304)
Q Consensus 1774 s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~v-----y~s~~~lGG~~i~~~nGv~d 1848 (2304)
..+|+||+|+|++.|||||...++|+++|.+++.+.+.+|..--..+-++. .....++ +++-+...|++|
T Consensus 188 ----~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~svisPEg~a~Il~~~~~~a~~aae~~~i-ta~~l~~~g~iD 262 (319)
T PRK05724 188 ----LKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYSVISPEGCASILWKDASKAPEAAEAMKI-TAQDLKELGIID 262 (319)
T ss_pred ----CCCCEEEEEeCCccHHHHHHHhccCeeeeecCceEeecCHHHHHHHHhcCchhHHHHHHHcCC-CHHHHHHCCCce
Confidence 127999999999999999999999999999999999999987666554421 0011233 345567899999
Q ss_pred EEec
Q 000086 1849 LTVS 1852 (2304)
Q Consensus 1849 ~~v~ 1852 (2304)
-|++
T Consensus 263 ~II~ 266 (319)
T PRK05724 263 EIIP 266 (319)
T ss_pred Eecc
Confidence 9985
No 133
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.27 E-value=1.3e-10 Score=143.02 Aligned_cols=272 Identities=13% Similarity=0.139 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhcc-EEEEccCCCCCCCccCHH--HHHHHHHHcCCCEE
Q 000086 59 AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIAD-QFVEVPGGTNNNNYANVQ--LIVEMAEMTRVDAV 135 (2304)
Q Consensus 59 ~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~AD-e~v~vp~~~~~~sY~dvd--~Ii~iA~~~~vDaV 135 (2304)
...+++.++++.|++++ +..+.|......-+ .|. ..+.++.. ...|.... ..+. -...|+|
T Consensus 19 st~~L~~aa~~rG~~v~----------~~~~~~l~~~~~~~-~a~~~~~~~~~~--~~~~~~~~~~~~~~---l~~~D~v 82 (312)
T TIGR01380 19 TTFALMEEAQKRGHELF----------FYEPGDLSVVNGEV-FARARPVRVGPN--KQDWYTLGEKVRLS---LGELDAV 82 (312)
T ss_pred hHHHHHHHHHHcCCEEE----------EEehhheEEECCEE-EEEEEEEEeccC--CcceeecCcccccc---cccCCEE
Confidence 67789999999999986 35555543211100 111 11333211 11121110 1111 1247999
Q ss_pred EeCCC--cCCC---CCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCccc
Q 000086 136 WPGWG--HASE---IPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2304)
Q Consensus 136 ~pG~G--~~SE---n~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~ 210 (2304)
++--+ +... ...+.+.++..|+.++ +++.+++.+.||..+..++. |+||+..
T Consensus 83 ~~R~~~~~~~~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~v------------------ 139 (312)
T TIGR01380 83 LMRKDPPFDMEYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTLV------------------ 139 (312)
T ss_pred EEeCCCCCChhhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEEE------------------
Confidence 97532 2211 1235677778898877 89999999999999888763 7888543
Q ss_pred ccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC-HHHHHHHHHHHHhhCCCCcEEEEEeccc--cceeeEEE
Q 000086 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN-DDEVRALFKQVQGEVPGSPIFIMKVASQ--SRHLEVQL 287 (2304)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s-~eEL~~a~~~~~~e~~~~~i~VEeyI~g--~reieVqv 287 (2304)
..+.+++.++.++.| |+|+||..|+||+|+.++++ ..++....+... .....++++|+|++. ..++.|-+
T Consensus 140 -----~~~~~~~~~~~~~~g-~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~-~~~~~~~~vQ~yI~~~~~~D~Rv~v 212 (312)
T TIGR01380 140 -----TRDKAEIRAFLAEHG-DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMT-QRGREPVMAQRYLPEIKEGDKRILL 212 (312)
T ss_pred -----eCCHHHHHHHHHHcC-CEEEEECCCCCCceEEEEcCCCccHHHHHHHHH-hccCCcEEEEeccccccCCCEEEEE
Confidence 457888889988888 99999999999999999975 333433333322 112358999999974 35777766
Q ss_pred EEcCCCCEEE-eecccccc-ccccc-eE-EEeCCCCCCCHHHHHHHHHHHHHHH---HHCCceeeeEEEEEEEccCCcEE
Q 000086 288 LCDQYGNVAA-LHSRDCSV-QRRHQ-KI-IEEGPITVAPLETVKKLEQAARRLA---KCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 288 l~D~~G~vi~-l~~RdcSv-qrr~q-Ki-ieeaPa~~l~~e~~~~m~e~A~rla---kalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
+. |++++ ...|...- ..|.+ .. -...|.. +++ +..+.|.+++ +.+|. ..+.||++- .+
T Consensus 213 v~---g~vv~~ai~R~~~~gd~r~N~~~Gg~~~~~~-l~~----e~~~ia~~~~~~~~~~gl-~~agVDiig------~~ 277 (312)
T TIGR01380 213 ID---GEPIGAAVARIPAGGEFRGNLAVGGRGEATE-LSE----RDREICADVAPELKRRGL-LFVGIDVIG------GY 277 (312)
T ss_pred EC---CeEEEEEEEecCCCCCccccccCCceeeccC-CCH----HHHHHHHHHHHHHHhcCC-cEEEEEEeC------CE
Confidence 65 45554 33331110 01100 00 0111222 333 3344444544 55565 355688872 47
Q ss_pred EEEeccCCCCCcceehhhhcCCHHHHHHHHH
Q 000086 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 361 fLEINpRlqgehpvtE~vtGVDL~~~qL~iA 391 (2304)
|+|+|+-=+....-.+.++|+|+....+...
T Consensus 278 v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~l 308 (312)
T TIGR01380 278 LTEVNVTSPTGIREIDRQKGVNIAGMLWDAI 308 (312)
T ss_pred EEEEecCCcchHHHHHhhhCCCHHHHHHHHH
Confidence 9999986333444455679999999887654
No 134
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=99.26 E-value=3.9e-11 Score=147.06 Aligned_cols=170 Identities=19% Similarity=0.155 Sum_probs=124.6
Q ss_pred ccccccC-CCCCceEEEEEEEeecCcccCCCcEEEEEEEecccc--------CCCcchHHHHHHHHHHHHHHHcCCCEEE
Q 000086 1612 LVLVERS-PGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFK--------AGSFGPREDAFFLAVTDLACAKKLPLIY 1682 (2304)
Q Consensus 1612 l~e~~r~-~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~--------~GS~g~~~~~k~~ra~e~A~~~~lP~I~ 1682 (2304)
+.|+... .+..+.+||+++.++ +||+|+|++||.++. .|++.+...+|..|++++|.+.++|+|+
T Consensus 153 f~EL~Gdr~~~dD~aIVtG~grI------~GrpV~VIandkg~~~ke~~~rnfG~~~peGyRKAlR~mklAekf~lPIVt 226 (431)
T PLN03230 153 WVELHGDRAGFDDPAIVCGIGSM------EGMSFMFIGHQKGRNTKENIYRNFAMPQPNGYRKALRFMRHAEKFGFPILT 226 (431)
T ss_pred HhhhcCcccCCCCCCeEEEEEEE------CCEEEEEEEeccCcccccccccCCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 5555433 334567899999876 999999999998664 4999999999999999999999999999
Q ss_pred EEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccc
Q 000086 1683 LAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVEN 1762 (2304)
Q Consensus 1683 l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~ 1762 (2304)
|.+++||+.+...+-. |.. .... +|
T Consensus 227 LVDTpGA~pG~~AEe~---------------Gqa------~aIA----------------------------------r~ 251 (431)
T PLN03230 227 FVDTPGAYAGIKAEEL---------------GQG------EAIA----------------------------------FN 251 (431)
T ss_pred EEeCCCcCCCHHHHHH---------------hHH------HHHH----------------------------------HH
Confidence 9999999998542211 100 0000 11
Q ss_pred c-ccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhccccccc---ccccC-c
Q 000086 1763 L-TGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSS---HMQLG-G 1837 (2304)
Q Consensus 1763 l-~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s---~~~lG-G 1837 (2304)
+ ..++ ..+|+||+|+|.+.|||||...+||+++|.+++.+++.||..--..+-++.-.. .+.++ +
T Consensus 252 l~ams~----------l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~ysVisPEgaAsILwkd~~~A~eAAealkit 321 (431)
T PLN03230 252 LREMFG----------LRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYVASPEACAAILWKSAAAAPKAAEALRIT 321 (431)
T ss_pred HHHHhc----------CCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEecCHHHHHHHHhccccchHHHHHHcCCC
Confidence 1 0111 137999999999999999999999999999999999999987766654432000 11222 3
Q ss_pred ceeecccCceEEEec
Q 000086 1838 PKIMATNGVVHLTVS 1852 (2304)
Q Consensus 1838 ~~i~~~nGv~d~~v~ 1852 (2304)
++-+.+.|++|-|++
T Consensus 322 A~dL~~~GiID~II~ 336 (431)
T PLN03230 322 AAELVKLGVVDEIVP 336 (431)
T ss_pred HHHHHhCCCCeEecc
Confidence 344568999999985
No 135
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.24 E-value=1.5e-11 Score=136.21 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=65.8
Q ss_pred CCeeeeCCCceeEE-------EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 687 PSKLVAETPCKLLR-------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 687 p~~l~APmPGkvv~-------~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
...|+|||+|++.+ |+|++||.|++||+|++||+|||+++|.|+.+|+|..+ ++.|+.|+.|++|++|+
T Consensus 80 ~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 80 GHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 45799999999997 89999999999999999999999999999999999988 99999999999999874
No 136
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=99.22 E-value=2.3e-11 Score=153.57 Aligned_cols=150 Identities=19% Similarity=0.086 Sum_probs=121.0
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceeccc------------CCCCeEEEEEEEECCeEEEEEEEecceeeccccC
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE------------GWARTVVTGRARLGGIPVGIVAVETQTVMQVIPA 1962 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~------------~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~pa 1962 (2304)
....+|+.|+. |+|+|||.|+.. ..+.++|||.|+++|++|.|+|+|+++.
T Consensus 41 GkltaReRv~~-----------LlD~Gsf~El~~~a~~~~~~~~~~~~~dGvVtG~G~i~Gr~~~v~a~D~TV~------ 103 (526)
T COG4799 41 GKLTARERVEL-----------LLDPGSFLELGALAGHRMGGDANELPGDGVVTGIGTINGRKVFVFANDFTVK------ 103 (526)
T ss_pred CcCcHHHHHHH-----------HcCCCchhhhhhhhhcccccccccCCCCeeEEeeeeeCCeEEEEEEecCcee------
Confidence 55778999997 789999999843 2356999999999999999999988766
Q ss_pred CCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCC--CC
Q 000086 1963 DPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK--QP 2040 (2304)
Q Consensus 1963 dpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~--vP 2040 (2304)
||+|++-.+.|+.|+.+.|.+.++|+|.|.|+.|...+.. -.-++..+.++...+.++ +|
T Consensus 104 ---------------gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGari~~~---v~~l~g~g~iF~~~a~~Sg~IP 165 (526)
T COG4799 104 ---------------GGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGARIQEG---VPSLAGYGRIFYRNARASGVIP 165 (526)
T ss_pred ---------------cccccccccchHHHHHHHHHHcCCCEEEEEcccccccccC---ccccccchHHHHHHHHhccCCC
Confidence 9999999999999999999999999999999999766544 222334466666655443 89
Q ss_pred EEEEEcCCCcCCchhhhhcccccCCccceeecccC-cEEEeeCccch
Q 000086 2041 VFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEGM 2086 (2304)
Q Consensus 2041 ~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~-A~~gvl~Peg~ 2086 (2304)
+|++|+ |.|+.||+|..--+ |+ +++-.+ +.+.+.+|.-+
T Consensus 166 qIsvv~-G~c~gGgaY~pal~----D~--~imv~~~~~mfltGP~~i 205 (526)
T COG4799 166 QISVVM-GPCAGGGAYSPALT----DF--VIMVRDQSYMFLTGPPVI 205 (526)
T ss_pred EEEEEE-ecCccccccccccc----ce--EEEEcCCccEEeeCHHHH
Confidence 999999 67777888865543 66 666665 99999999654
No 137
>PRK05246 glutathione synthetase; Provisional
Probab=99.22 E-value=2.8e-10 Score=140.41 Aligned_cols=275 Identities=12% Similarity=0.123 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHH--HHHHHHHHcCCCEE
Q 000086 58 MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQ--LIVEMAEMTRVDAV 135 (2304)
Q Consensus 58 ~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd--~Ii~iA~~~~vDaV 135 (2304)
-...++++++++.|++++ +.++.|.......+.--...+.++.. .+.|.... ....+ ...|+|
T Consensus 19 ~st~~l~~aa~~~G~~v~----------~~~~~dl~~~~~~i~~~~~~~~~~~~--~~~w~~~~~~~~~~l---~~~D~v 83 (316)
T PRK05246 19 DSTFAMMLEAQRRGHELF----------YYEPDDLSLRGGEVVARARPLTVRDD--KGDWYELGEEQRLPL---ADFDVI 83 (316)
T ss_pred ChHHHHHHHHHHcCCEEE----------EEehhhcEEECCEEEEEEEEEEeccC--CccceeccccccCcc---ccCCEE
Confidence 345779999999999975 46666654322111100011222221 11221110 01111 237999
Q ss_pred EeCCC--cCCCC---CchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCccc
Q 000086 136 WPGWG--HASEI---PELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2304)
Q Consensus 136 ~pG~G--~~SEn---~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~ 210 (2304)
++.-+ +..+. ..+.+.++..|+.++ +++++++.+.||..+.++++ ++|++..
T Consensus 84 ~~R~~~~~~~~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~~------------------ 140 (316)
T PRK05246 84 LMRKDPPFDMEYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTLV------------------ 140 (316)
T ss_pred EEcCCCCCChHHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEEE------------------
Confidence 97622 11110 124566677898887 88999999999999988765 6777554
Q ss_pred ccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC-HHHHHHHHHHHHhhCCCCcEEEEEeccc--cceeeEEE
Q 000086 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN-DDEVRALFKQVQGEVPGSPIFIMKVASQ--SRHLEVQL 287 (2304)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s-~eEL~~a~~~~~~e~~~~~i~VEeyI~g--~reieVqv 287 (2304)
..+.+++.++.++.| |+|+||..|+||+||.++.. ..++....+.+.. ....++++|+|++. ..++.|-+
T Consensus 141 -----~~~~~~~~~~~~~~~-~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~-~~~~~~lvQ~~I~~~~~~D~Rv~v 213 (316)
T PRK05246 141 -----TRDKAEIRAFRAEHG-DIILKPLDGMGGAGIFRVKADDPNLGSILETLTE-HGREPVMAQRYLPEIKEGDKRILL 213 (316)
T ss_pred -----eCCHHHHHHHHHHCC-CEEEEECCCCCccceEEEeCCCccHHHHHHHHHH-ccCCeEEEEeccccCCCCCEEEEE
Confidence 567888888888888 99999999999999999954 4444444443332 22468999999976 35777776
Q ss_pred EEcCCCCEEE-eecccccc-ccccc--eEEEeCCCCCCCHHHHHHHHHHHHHHH---HHCCceeeeEEEEEEEccCCcEE
Q 000086 288 LCDQYGNVAA-LHSRDCSV-QRRHQ--KIIEEGPITVAPLETVKKLEQAARRLA---KCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 288 l~D~~G~vi~-l~~RdcSv-qrr~q--KiieeaPa~~l~~e~~~~m~e~A~rla---kalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
+. |++++ ...|-..- ..+.. .--...|.. +++ +..+.|.+++ +.+|. ..+.||++. . |
T Consensus 214 v~---g~vv~~a~~R~~~~~~~rtN~~~Gg~~~~~~-l~~----~~~~ia~~~~~~l~~~gl-~~~GVDli~-----~-~ 278 (316)
T PRK05246 214 VD---GEPVGYALARIPAGGETRGNLAAGGRGEATP-LTE----RDREICAAIGPELKERGL-IFVGIDVIG-----D-Y 278 (316)
T ss_pred EC---CEEhhheeEecCCCCCcccCccCCceEeccC-CCH----HHHHHHHHHHHHHHHhCC-CEEEEEEeC-----C-E
Confidence 63 45665 44442110 00100 000111222 333 3455555555 45554 356788872 1 6
Q ss_pred EEEeccCCCCCcceehhhhcCCHHHHHHHHHc
Q 000086 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGM 392 (2304)
Q Consensus 361 fLEINpRlqgehpvtE~vtGVDL~~~qL~iA~ 392 (2304)
++|+|..-.++..-.|.+||+|+....+....
T Consensus 279 l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~~~ 310 (316)
T PRK05246 279 LTEINVTSPTGIREIERLTGVDIAGMLWDAIE 310 (316)
T ss_pred EEEEeCCCchHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999763444677788999999999887654
No 138
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.20 E-value=2.7e-11 Score=140.15 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=66.2
Q ss_pred CeeeeCCCceeEE-------EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 688 SKLVAETPCKLLR-------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 688 ~~l~APmPGkvv~-------~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
..|+|||+|++++ |+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|++|++
T Consensus 198 ~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IEP 274 (274)
T PLN02983 198 PPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP 274 (274)
T ss_pred CeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence 5799999999999 89999999999999999999999999999999999998 999999999999999863
No 139
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.20 E-value=2.7e-10 Score=139.64 Aligned_cols=176 Identities=17% Similarity=0.217 Sum_probs=126.7
Q ss_pred CCCeEECCCHHHHHHhcCHHHHHHHHHHCC-------CCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHH---H
Q 000086 155 KGIIFLGPPATSMAALGDKIGSSLIAQAAN-------VPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAI---A 224 (2304)
Q Consensus 155 ~GI~fiGPs~eam~~lgDK~~sr~laq~aG-------VPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~---~ 224 (2304)
.|+.++ .++++++.|.||..+..++.++| ||+|++.. +.+.+.+. .
T Consensus 91 pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v-----------------------~~~~~~al~~~~ 146 (328)
T PLN02941 91 PDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLV-----------------------VYDDESSIPDAV 146 (328)
T ss_pred CCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEE-----------------------EcCHHHHHHHHH
Confidence 588877 99999999999999999999999 88998765 44554433 3
Q ss_pred HhhccCCcEEEeecCC---CCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc-cceeeEEEEEcCCCCEEEeec
Q 000086 225 SCQVVGYPAMIKASWG---GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ-SRHLEVQLLCDQYGNVAALHS 300 (2304)
Q Consensus 225 ~a~~IGyPVVIKPs~G---gGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g-~reieVqvl~D~~G~vi~l~~ 300 (2304)
..+++|||+|+||..| ..|++|.++.++++|... +.|+++||||.. ++-+-|-+++|. + ....
T Consensus 147 ~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l---------~~p~~lQEfVnh~g~d~RVfVvGd~---v-~~~~ 213 (328)
T PLN02941 147 ALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKL---------EPPLVLQEFVNHGGVLFKVYVVGDY---V-KCVR 213 (328)
T ss_pred HHhcCCCCEEEeecccCCCccccceEEecCHHHHHhc---------CCcEEEEEecCCCCEEEEEEEECCE---E-EEEE
Confidence 4568999999999999 889999999999988861 358999999954 577888888764 2 2222
Q ss_pred cccccc-cc-c-ceEEEe-------------CC-CC-------CCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccC
Q 000086 301 RDCSVQ-RR-H-QKIIEE-------------GP-IT-------VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2304)
Q Consensus 301 RdcSvq-rr-~-qKiiee-------------aP-a~-------~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~ 356 (2304)
| .|.. .+ . .....+ +. .. .......++|++.|.++.+++|. +.+.||++.+.++
T Consensus 214 R-~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl-~l~GvDvI~~~~~ 291 (328)
T PLN02941 214 R-FSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGL-RLFNFDMIREHGT 291 (328)
T ss_pred e-cCCcccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCC-ceEEEEEEeecCC
Confidence 2 1220 00 0 000000 00 00 11112345799999999999997 6778999998533
Q ss_pred -CcEEEEEeccCCC
Q 000086 357 -GEYYFLELNPRLQ 369 (2304)
Q Consensus 357 -g~~yfLEINpRlq 369 (2304)
++++++|||.-++
T Consensus 292 ~~~~~VidVN~fP~ 305 (328)
T PLN02941 292 GDRYYVIDINYFPG 305 (328)
T ss_pred CCceEEEEecCCCc
Confidence 4799999999775
No 140
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.15 E-value=7.8e-11 Score=130.51 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=65.9
Q ss_pred CCeeeeCCCceeEE-------EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 687 PSKLVAETPCKLLR-------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 687 p~~l~APmPGkvv~-------~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
...|+|||+|++.. |+|++||.|++||+|+.||+|||.++|+||.+|+|..+ ++.|+.|..|++|++|+
T Consensus 79 ~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 79 GHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 45799999999998 89999999999999999999999999999999999988 99999999999999874
No 141
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.11 E-value=1.8e-10 Score=109.08 Aligned_cols=66 Identities=30% Similarity=0.569 Sum_probs=63.3
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
+++||++|+|.+|++++|+.|++||+++.+|+|||..+|+||.+|+|..+ +++|+.|.+|++|+.|
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CccCCccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 47899999999999999999999999999999999999999999999988 9999999999999875
No 142
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.07 E-value=2.6e-09 Score=130.27 Aligned_cols=199 Identities=16% Similarity=0.122 Sum_probs=119.9
Q ss_pred CCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCC-cEEEeecCC
Q 000086 162 PPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY-PAMIKASWG 240 (2304)
Q Consensus 162 Ps~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGy-PVVIKPs~G 240 (2304)
++.+....+.||..+..+++++|||+|++.... ..-.+.+++.+++. ++ |||+||..|
T Consensus 27 N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~-------------------s~~~~~~~l~~~~~--~~~~VVVKPl~G 85 (317)
T TIGR02291 27 NKRSLYPLVDDKLKTKIIAQAAGITVPELYGVI-------------------HNQAEVKTIHNIVK--DHPDFVIKPAQG 85 (317)
T ss_pred CCchhccccccHHHHHHHHHHcCCCCCCEEEec-------------------CchhhHHHHHHHHc--cCCCEEEEECCC
Confidence 666777889999999999999999999965400 00123444555544 45 699999999
Q ss_pred CCCcCeEEECCHHH---------------HHHHHHH----HHhhC-CCCcEEEEEecccc-----------ceeeEEEEE
Q 000086 241 GGGKGIRKVHNDDE---------------VRALFKQ----VQGEV-PGSPIFIMKVASQS-----------RHLEVQLLC 289 (2304)
Q Consensus 241 gGGkGIr~V~s~eE---------------L~~a~~~----~~~e~-~~~~i~VEeyI~g~-----------reieVqvl~ 289 (2304)
++|+||.++++.++ +...... +.... +...+++|+++... +.+.|-++.
T Consensus 86 s~GrGI~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~ 165 (317)
T TIGR02291 86 SGGKGILVITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFK 165 (317)
T ss_pred CCccCeEEEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEEC
Confidence 99999999976543 3333332 21111 12235665554332 345555554
Q ss_pred cCCCCEEEeecccccc---ccc---cce--EE-------------------EeCCC-----CCCCHHHHHHHHHHHHHHH
Q 000086 290 DQYGNVAALHSRDCSV---QRR---HQK--II-------------------EEGPI-----TVAPLETVKKLEQAARRLA 337 (2304)
Q Consensus 290 D~~G~vi~l~~RdcSv---qrr---~qK--ii-------------------eeaPa-----~~l~~e~~~~m~e~A~rla 337 (2304)
+ ..+.-.-| ++. ..+ |+. .. +.-|. ..+.....+++.+.|.+++
T Consensus 166 ~---~~vaa~~R-~~~~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~ 241 (317)
T TIGR02291 166 G---YPVMAMMR-LPTRASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCW 241 (317)
T ss_pred C---EEEEEEEE-ccCccCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHH
Confidence 3 23322222 111 001 110 00 00111 1122356788999999999
Q ss_pred HHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHH
Q 000086 338 KCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQV 388 (2304)
Q Consensus 338 kalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL 388 (2304)
+++|. |...+|+++++ ++++++||+|+.++-+ |..-...|++-.-..+
T Consensus 242 ~~~g~-~~~GvDii~~~-~~g~~VlEVN~~Pg~t-~~~a~~~Gl~~~~~~~ 289 (317)
T TIGR02291 242 ELTGL-GYMGVDMVLDK-EEGPLVLELNARPGLA-IQIANGAGLLPRLKHI 289 (317)
T ss_pred HhcCC-CeEEEEEEEeC-CCCEEEEEeCCCCCCC-HHHHHHCCCcHHHHHH
Confidence 99997 99999999984 5789999999998865 2222334544433333
No 143
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=99.07 E-value=3.5e-10 Score=136.87 Aligned_cols=161 Identities=21% Similarity=0.249 Sum_probs=119.2
Q ss_pred CCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhh
Q 000086 1618 SPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEV 1697 (2304)
Q Consensus 1618 ~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v 1697 (2304)
.++..+. +|+|..+| +|++|-+++||+.|++|+++...+.|..|.+|+|.+.+||+|.+.+.+| +|+ +.-
T Consensus 332 ~~~y~~t-lvtGfarl------nG~tVgIvgnn~kf~~G~L~s~sa~KgarfIe~c~q~~IPLi~l~ni~G-fm~--g~~ 401 (536)
T KOG0540|consen 332 KPGYGDT-LVTGFARL------NGRTVGIVGNNPKFAGGVLFSESAVKGARFIELCDQRNIPLIFLQNITG-FMV--GRA 401 (536)
T ss_pred ccccccc-eeeeeeeE------CCEEEEEeccCchhcccccchhhhhhhHHHHHHHHhcCCcEEEEEccCC-ccc--cch
Confidence 3555555 78888877 9999999999999999999999999999999999999999999999988 998 555
Q ss_pred hhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccccccccccccccccccc
Q 000086 1698 KACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAY 1777 (2304)
Q Consensus 1698 ~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay 1777 (2304)
..+++|+ ..|-+-+ +.-|-
T Consensus 402 ~e~~gIa-------K~gAklv------------------------------------------------------~a~a~ 420 (536)
T KOG0540|consen 402 AEAGGIA-------KHGAKLV------------------------------------------------------YAVAC 420 (536)
T ss_pred hhhhchh-------hhhhhhh------------------------------------------------------hhhhh
Confidence 5554444 1111111 22233
Q ss_pred ccceEEEEEcCcccch-hh--hhhcccCEEEEecCcceEecCh-H---HHHHhh-------cccccccccccCcceeecc
Q 000086 1778 KETFTLTYVTGRTVGI-GA--YLARLGMRCIQRLDQPIILTGF-S---ALNKLL-------GREVYSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1778 ~~iptis~vtg~t~G~-gA--yl~~lgd~~I~~~~~~i~ltG~-~---al~~~l-------G~~vy~s~~~lGG~~i~~~ 1843 (2304)
+.+|.||++||+|+|| -| ..+.++|++++.|++.|.+.|. + +|.+.. +.+. -+-||-+=.-..
T Consensus 421 akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~~a~~Vi~q~~~e~a~~~~~~~---~E~f~npy~a~~ 497 (536)
T KOG0540|consen 421 AKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGKQAANVIFQITLEKAVALKAPY---IEKFGNPYYAAA 497 (536)
T ss_pred ccCceEEEEecCccCCcccccccccCCceeEEcccceeeeccccchhhhhhhhhhhhhhhhcchH---HHHhcCccHHHH
Confidence 4589999999999994 12 4577899999999999999998 6 454542 2222 233444444456
Q ss_pred cCceEEEec
Q 000086 1844 NGVVHLTVS 1852 (2304)
Q Consensus 1844 nGv~d~~v~ 1852 (2304)
.|..|-+++
T Consensus 498 Rg~~D~II~ 506 (536)
T KOG0540|consen 498 RGWDDGIID 506 (536)
T ss_pred hhccccccC
Confidence 788887774
No 144
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=99.02 E-value=5.2e-08 Score=115.03 Aligned_cols=277 Identities=13% Similarity=0.136 Sum_probs=178.7
Q ss_pred HHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000086 35 VDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2304)
Q Consensus 35 ~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~ 114 (2304)
+.++++...- +.-+|..+ +...|+.++..|+++|++|+ +++- .-....-.....||+++.+.
T Consensus 7 ileil~~Y~~--~~i~Iat~-gSHSaL~Il~GAK~EGF~Ti---------~v~~-~gr~~~Y~~f~~a~e~i~v~----- 68 (361)
T COG1759 7 ILEILENYDL--EDITIATI-GSHSALQILDGAKEEGFRTI---------AVCQ-RGREKPYEKFPVADEVIIVD----- 68 (361)
T ss_pred HHHHHHhccc--cceEEEEe-ecchHHHHhhhHHhcCCcEE---------EEEe-cCccchHHhhchhheEEEec-----
Confidence 4456665522 22234444 46899999999999999985 3433 22112222334578888884
Q ss_pred CCccCH--HHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCC
Q 000086 115 NNYANV--QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSG 192 (2304)
Q Consensus 115 ~sY~dv--d~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~ 192 (2304)
.|.|+ +.|.+-.++. ++|+.-.|......-.-..-.+.-++.+|+. ..++.-.|...-+.+++++|++.|.-
T Consensus 69 -~f~dil~~~iqe~L~~~--n~I~IP~gSfv~Y~G~d~ie~~~~vP~fGnR-~lLrwE~~~~~~~~lLekAgi~~P~~-- 142 (361)
T COG1759 69 -KFSDILNEEIQEELREL--NAIFIPHGSFVAYVGYDGIENEFEVPMFGNR-ELLRWEEDRKLEYKLLEKAGLRIPKK-- 142 (361)
T ss_pred -hhHHHhhHHHHHHHHHc--CeEEecCCceEEEecchhhhhcccCcccccH-hHhhhhcchhhHHHHHHHcCCCCCcc--
Confidence 44333 2334434443 4444333332222112122233456667654 44555669999999999999999982
Q ss_pred CCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC-----
Q 000086 193 SHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----- 267 (2304)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----- 267 (2304)
..+++| |.-|||||....-||+|-+++.|.+|+.+..+++....-
T Consensus 143 -----------------------~~~Pee-------Idr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~ed 192 (361)
T COG1759 143 -----------------------YKSPEE-------IDRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEED 192 (361)
T ss_pred -----------------------cCChHH-------cCCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhh
Confidence 345655 456999999999999999999999999999998875321
Q ss_pred CCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceE-----------------------EEeCCCCCCCHH
Q 000086 268 GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI-----------------------IEEGPITVAPLE 324 (2304)
Q Consensus 268 ~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKi-----------------------ieeaPa~~l~~e 324 (2304)
-....||||+-|. ++..+.+...--+.+-+.+-| ||.+-- +...|.+ +.+.
T Consensus 193 lkna~IeEYv~G~-~f~~~yFyS~i~~~lEl~g~D----~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~v-lRES 266 (361)
T COG1759 193 LKNARIEEYVVGA-PFYFHYFYSPIKDRLELLGID----RRYESNLDGLVRLPAKDQLELNLEPTYVVVGNIPVV-LRES 266 (361)
T ss_pred hhhceeeEEeecc-ceeeeeeeccccCceeEeeee----heeeccchhhccCCHHHHhhcCCCceEEEECCcchh-hHHH
Confidence 1367899999874 666665543322223333322 222211 1123544 6677
Q ss_pred HHHHHHHHHHHHHHHC------CceeeeEEEEEEEccCCcEEEEEeccCCCCCc
Q 000086 325 TVKKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQVEH 372 (2304)
Q Consensus 325 ~~~~m~e~A~rlakal------Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh 372 (2304)
+..++.+++.+++++. |..|+++.|.++++ +=.+++.|+.+|+.++.
T Consensus 267 LL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~-dl~~vVfevS~Ri~gGT 319 (361)
T COG1759 267 LLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTD-DLEFVVFEVSARIVGGT 319 (361)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecC-CccEEEEEEeccccCCc
Confidence 7788888888877765 78899999999995 66899999999997653
No 145
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.99 E-value=6.1e-10 Score=156.34 Aligned_cols=69 Identities=28% Similarity=0.493 Sum_probs=66.4
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
...|.|||||+|++|+|++||+|++||+|++||+|||+++|.||.+|+|+++ +++|+.|.+|++|+.|+
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 4579999999999999999999999999999999999999999999999999 99999999999999885
No 146
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=98.92 E-value=1.5e-09 Score=137.30 Aligned_cols=66 Identities=30% Similarity=0.462 Sum_probs=62.4
Q ss_pred CCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 693 PmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
-.+|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|+.|+.++
T Consensus 103 ~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~~~ 169 (463)
T PLN02226 103 ITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKSE 169 (463)
T ss_pred cceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEeccCC
Confidence 4589999999999999999999999999999999999999999988 99999999999999997543
No 147
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=98.90 E-value=2.2e-09 Score=134.00 Aligned_cols=65 Identities=26% Similarity=0.449 Sum_probs=62.2
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
..|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|.++ +++|+.|.+|++|+.++...
T Consensus 15 ~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 15 TEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred ceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 579999999999999999999999999999999999999999988 99999999999999998654
No 148
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=98.90 E-value=3.6e-09 Score=102.75 Aligned_cols=60 Identities=20% Similarity=0.384 Sum_probs=57.9
Q ss_pred CceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 695 PGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
+|++.+|++++|++|++||+++.+|+|||.++|+||.+|+|..+ ++.|+.+.+|+.|++|
T Consensus 13 ~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 13 DGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 78999999999999999999999999999999999999999988 9999999999999874
No 149
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=98.88 E-value=2.8e-09 Score=134.17 Aligned_cols=65 Identities=20% Similarity=0.356 Sum_probs=62.0
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
..|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|.++ +++|+.|..|++|++|+..+
T Consensus 57 ~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 57 SEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGG 122 (418)
T ss_pred ceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCCC
Confidence 479999999999999999999999999999999999999999988 99999999999999998654
No 150
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=98.83 E-value=1.3e-08 Score=128.89 Aligned_cols=66 Identities=24% Similarity=0.424 Sum_probs=62.5
Q ss_pred CCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 693 PmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
...|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|++|+.++
T Consensus 14 ~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 14 VTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 3469999999999999999999999999999999999999999888 99999999999999998655
No 151
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=98.73 E-value=1.5e-07 Score=119.59 Aligned_cols=147 Identities=22% Similarity=0.280 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccC-CcEEEeec--CCCCC--cCe
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKAS--WGGGG--KGI 246 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs--~GgGG--kGI 246 (2304)
+.+.+|++++++|||+|+|.. +++.+++.++++++| ||+++||. .|+-| -||
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~~-----------------------~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV 60 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGYV-----------------------ATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGV 60 (386)
T ss_pred cHHHHHHHHHHcCCCCCCcee-----------------------eCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceE
Confidence 467889999999999999876 788999999999999 99999998 33322 299
Q ss_pred EEECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcCC--CCEEEee---ccccc-cccc-
Q 000086 247 RKVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQY--GNVAALH---SRDCS-VQRR- 308 (2304)
Q Consensus 247 r~V~s~eEL~~a~~~~~~e~--------~~---~~i~VEeyI~g~reieVqvl~D~~--G~vi~l~---~RdcS-vqrr- 308 (2304)
+++.|.+++.++++++.... ++ ..++||+++++++|+.+.++.|.. |.++.++ +.+.- +...
T Consensus 61 ~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~ 140 (386)
T TIGR01016 61 KVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKS 140 (386)
T ss_pred EEeCCHHHHHHHHHHHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhC
Confidence 99999999999998876421 12 369999999978999999999863 4444433 11110 1111
Q ss_pred cceE--EEeCCCC--------------CCCHHHHHHHHHHHHHHHHHCC
Q 000086 309 HQKI--IEEGPIT--------------VAPLETVKKLEQAARRLAKCVN 341 (2304)
Q Consensus 309 ~qKi--ieeaPa~--------------~l~~e~~~~m~e~A~rlakalG 341 (2304)
..|+ +...|.. .++....+++.+.+.++.+.+.
T Consensus 141 p~~i~~~~i~p~~~~~~~~a~~~~~~l~~~~~~~~~l~~~l~~l~~~~~ 189 (386)
T TIGR01016 141 PEKIIKYAIDPLTGLLPYQAREIAKKLGLEGELVKQVADIIKKLYQIFL 189 (386)
T ss_pred ccceEEEEcCCCcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 1122 2222311 1345666778888888877765
No 152
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.71 E-value=2.3e-07 Score=107.51 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=121.4
Q ss_pred cccccccCCCceecccCCCCeEEEEEEEE-CCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHH
Q 000086 1913 WIGGIFDKDSFVETLEGWARTVVTGRARL-GGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1991 (2304)
Q Consensus 1913 ~~~gl~D~gsF~E~~~~~a~~vVtG~arl-~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~ 1991 (2304)
|+..||-.+. ++. -...++.|-+.. +|+++.||.+. + +|.++-+.+.+.|+
T Consensus 2 ~l~~Lf~~~~--~~~--~~~~v~~g~~~~~~~~~iaVvg~~---------------~---------~~~vGl~ea~~lA~ 53 (234)
T PF06833_consen 2 WLAALFPDGH--GIP--ASVQVLDGEAGGEDGRFIAVVGDA---------------N---------HGEVGLEEAWALAK 53 (234)
T ss_pred hHHHhcCCCC--CcC--cccceEEeeccccCCcEEEEEecC---------------C---------CCcccHHHHHHHHH
Confidence 6666665421 111 134588888888 88999998861 1 57899999999999
Q ss_pred HHHHhh--ccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCC---CCEEEEEcCCCcCCchhhhhcccccCCc
Q 000086 1992 ALMDFN--REELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK---QPVFVYIPMMAELRGGAWVVVDSRINSD 2066 (2304)
Q Consensus 1992 ~i~~~~--~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~---vP~i~~I~~~ge~~GGa~vv~~~~i~~d 2066 (2304)
++.+.- ..+.|||.++|++|-..|.++|.-|+-++.|.+.++|..++ .|+|..|. |++-+|+|++.+-. +|
T Consensus 54 ~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~--G~A~SGaFLA~Glq--A~ 129 (234)
T PF06833_consen 54 AVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVY--GKAMSGAFLAHGLQ--AN 129 (234)
T ss_pred HHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEe--cccccHHHHHHHHH--hc
Confidence 998764 48999999999999999999999999999888888877754 79999999 89999999999875 34
Q ss_pred cceeecccCcEEEeeCccchhhhhcchh
Q 000086 2067 HIEMYADRTAKGNVLEPEGMIEIKFRTK 2094 (2304)
Q Consensus 2067 ~~~~~A~p~A~~gvl~Peg~v~i~~r~~ 2094 (2304)
. +||.|++.+.||+.+.++.|.-|.-
T Consensus 130 r--l~AL~ga~i~vM~~~s~ARVTk~~v 155 (234)
T PF06833_consen 130 R--LIALPGAMIHVMGKPSAARVTKRPV 155 (234)
T ss_pred c--hhcCCCCeeecCChHHhHHHhhcCH
Confidence 5 8999999999999999998866544
No 153
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=98.71 E-value=3e-08 Score=125.55 Aligned_cols=65 Identities=26% Similarity=0.446 Sum_probs=62.7
Q ss_pred CceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000086 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 695 PGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2304)
-|+|++|+|++||+|++||+|++||+.|..++|.||.+|+|.++ +++|++|..|++|++|+.++.
T Consensus 16 EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~ 81 (404)
T COG0508 16 EGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGA 81 (404)
T ss_pred eEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence 68999999999999999999999999999999999999999999 999999999999999998754
No 154
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=98.70 E-value=6.3e-08 Score=122.58 Aligned_cols=65 Identities=28% Similarity=0.439 Sum_probs=61.7
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
..|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|+++ +++|+.|..|++|++|+.++
T Consensus 13 ~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~ 78 (403)
T TIGR01347 13 TEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGN 78 (403)
T ss_pred ceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 359999999999999999999999999999999999999999988 99999999999999998653
No 155
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.66 E-value=3.3e-07 Score=116.45 Aligned_cols=105 Identities=20% Similarity=0.290 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhcc-CCcEEEeecCCCCCc----Ce
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGK----GI 246 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGk----GI 246 (2304)
+++.+|++++++|||+|+|.. +++.+|+.++++++ ||||++||....||| ||
T Consensus 4 ~e~~ak~lL~~~gIpvp~~~~-----------------------~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV 60 (388)
T PRK00696 4 HEYQAKELFAKYGVPVPRGIV-----------------------ATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGV 60 (388)
T ss_pred CHHHHHHHHHHcCCCCCCCee-----------------------eCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccE
Confidence 578899999999999999876 78999999999999 999999998655555 99
Q ss_pred EEECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcC-CCCEEEee
Q 000086 247 RKVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQ-YGNVAALH 299 (2304)
Q Consensus 247 r~V~s~eEL~~a~~~~~~e~--------~~---~~i~VEeyI~g~reieVqvl~D~-~G~vi~l~ 299 (2304)
+++.|.+++.++++++.... ++ ..++||+++++++|+.+.+..|. .|.++.++
T Consensus 61 ~l~~~~~e~~~a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~ 125 (388)
T PRK00696 61 KLAKSPEEAREFAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMA 125 (388)
T ss_pred EEcCCHHHHHHHHHHhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEE
Confidence 99999999999999887542 12 25899999998899999999996 46666544
No 156
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.58 E-value=1.3e-06 Score=106.63 Aligned_cols=193 Identities=20% Similarity=0.201 Sum_probs=125.1
Q ss_pred CCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhcc-CCcEEEeecCC
Q 000086 162 PPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWG 240 (2304)
Q Consensus 162 Ps~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~G 240 (2304)
.+.+...++.||..++.++.++|||+|+... .++.+.+......+.+++.+++... ..++++||+.|
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G 83 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIF------------NVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANG 83 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEE------------eccceEEecccccCHHHHHHHHHhccCCcEEEEeCCC
Confidence 6678888999999999999999999999432 2233333333467888998888764 68999999999
Q ss_pred CCCcCeEEECCHH------HHHHHHHHHHhhCCCCcEEEEEeccccc-----------eeeEEEEEcCCCCEEEe--e--
Q 000086 241 GGGKGIRKVHNDD------EVRALFKQVQGEVPGSPIFIMKVASQSR-----------HLEVQLLCDQYGNVAAL--H-- 299 (2304)
Q Consensus 241 gGGkGIr~V~s~e------EL~~a~~~~~~e~~~~~i~VEeyI~g~r-----------eieVqvl~D~~G~vi~l--~-- 299 (2304)
.||+||.+++..+ +....+.... ...+..++||+++.... -+.|-.+.+. |.+..+ .
T Consensus 84 ~~G~Gi~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~~~~a~lR 161 (285)
T PF14397_consen 84 SGGKGILVIDRRDGSEINRDISALYAGLE-SLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVEVLMAMLR 161 (285)
T ss_pred CCccCEEEEEeecCcccccchhHHHHHHH-hcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeEEEEEEEE
Confidence 9999999987665 2222222222 11122799999996532 1333344343 222110 0
Q ss_pred -cc----------------------cccc--ccccceEEEeCCCCCC-----CHHHHHHHHHHHHHHHHHCCceeeeEEE
Q 000086 300 -SR----------------------DCSV--QRRHQKIIEEGPITVA-----PLETVKKLEQAARRLAKCVNYVGAATVE 349 (2304)
Q Consensus 300 -~R----------------------dcSv--qrr~qKiieeaPa~~l-----~~e~~~~m~e~A~rlakalGy~Ga~tVE 349 (2304)
++ -+.. ...+.+.++.-|.+.. .-.-++++.+.+.++++.+...+....|
T Consensus 162 lg~~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWD 241 (285)
T PF14397_consen 162 LGRGGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWD 241 (285)
T ss_pred eCCCCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEE
Confidence 00 0011 0111222333343321 2234789999999999999888999999
Q ss_pred EEEEccCCcEEEEEeccCCCC
Q 000086 350 YLYSMETGEYYFLELNPRLQV 370 (2304)
Q Consensus 350 fl~d~~~g~~yfLEINpRlqg 370 (2304)
+.+|+ +| |.+||.|.|.+.
T Consensus 242 vait~-~G-p~llE~N~~~~p 260 (285)
T PF14397_consen 242 VAITE-DG-PVLLEGNARWDP 260 (285)
T ss_pred EEEcC-CC-cEEEEeeCCCCC
Confidence 99993 45 999999999543
No 157
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.55 E-value=1e-07 Score=127.41 Aligned_cols=65 Identities=26% Similarity=0.396 Sum_probs=62.0
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|+.+ +++|+.|..|++|++|+.++
T Consensus 13 ~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~~ 78 (633)
T PRK11854 13 DEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESAD 78 (633)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEeccc
Confidence 478999999999999999999999999999999999999999988 99999999999999998763
No 158
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.55 E-value=9.8e-08 Score=127.55 Aligned_cols=66 Identities=21% Similarity=0.393 Sum_probs=62.5
Q ss_pred CCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 693 PmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
...|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|+.|+.++
T Consensus 216 ~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~ 282 (633)
T PRK11854 216 GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEG 282 (633)
T ss_pred ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 4589999999999999999999999999999999999999999998 99999999999999997543
No 159
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=98.54 E-value=3.6e-07 Score=116.40 Aligned_cols=64 Identities=25% Similarity=0.524 Sum_probs=60.4
Q ss_pred CceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 695 PGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
-|+|++|+|++||.|++||+++++|+|||++++.||.+|+|.++ +++|+.|..|++|+.|+.++
T Consensus 12 eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 12 ECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred EEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 38999999999999999999999999999999999999999988 99999999999999997443
No 160
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.46 E-value=1.4e-06 Score=102.93 Aligned_cols=172 Identities=14% Similarity=0.129 Sum_probs=120.1
Q ss_pred EEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHH--HcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1625 GMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLAC--AKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1625 g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~--~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
+||++..++ +|++|.|++|+..+ .||..++.|..+....+. +.++|+|.|.|+.|++++..+|...+.+
T Consensus 21 ~vv~G~arl------~G~~V~vIa~~~~~---~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~ 91 (238)
T TIGR03134 21 GVLVGSAEL------AGGKVTVIGVVPDA---EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQ 91 (238)
T ss_pred cEEEEEEEE------CCEEEEEEEECCCC---cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHH
Confidence 699999987 99999999999866 889899999999998863 4899999999999999997665443210
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
...++.... ..++. ..+|+
T Consensus 92 ---------------------a~A~l~~a~----------------------------a~a~~------------~~vP~ 110 (238)
T TIGR03134 92 ---------------------ALAHLAKAL----------------------------ALARL------------AGHPV 110 (238)
T ss_pred ---------------------HHHHHHHHH----------------------------HHhhc------------CCCCE
Confidence 001110000 00011 12699
Q ss_pred EEEEcCcccchhhhhhcc-cCEEEEecCcceEecChHHHHHhhcccccc-------cccccCcceeecccCceEEEecCc
Q 000086 1783 LTYVTGRTVGIGAYLARL-GMRCIQRLDQPIILTGFSALNKLLGREVYS-------SHMQLGGPKIMATNGVVHLTVSDD 1854 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~l-gd~~I~~~~~~i~ltG~~al~~~lG~~vy~-------s~~~lGG~~i~~~nGv~d~~v~dd 1854 (2304)
|++|+|.++|||++--.+ +|++++-+++.+..-+|..--..+-+++-. .+..--+++...+.|.+|-+.+..
T Consensus 111 IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~vm~~e~aa~I~~~~~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~ 190 (238)
T TIGR03134 111 IGLIYGKAISGAFLAHGLQADRIIALPGAMVHVMDLESMARVTKRSVEELEALAKSSPVFAPGIENFVKLGGVHALLDVA 190 (238)
T ss_pred EEEEeCCccHHHHHHHccCcCeEEEcCCcEEEecCHHHHHHHHccCHhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCC
Confidence 999999999987665555 899999999999999998877776654410 011123444456899999988633
Q ss_pred HH--HHHHHHHHHh
Q 000086 1855 LE--GISAILKWLS 1866 (2304)
Q Consensus 1855 ~~--~~~~i~~~Ls 1866 (2304)
.. .-+.+...++
T Consensus 191 ~~~~~~~~~~~~~~ 204 (238)
T TIGR03134 191 DADAPAAQLAAVLA 204 (238)
T ss_pred CcccHHHHHHHHHH
Confidence 31 1245555554
No 161
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.44 E-value=2.6e-07 Score=121.40 Aligned_cols=65 Identities=28% Similarity=0.443 Sum_probs=61.6
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|+++ +++|+.|..|++|+.|+.++
T Consensus 128 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 193 (546)
T TIGR01348 128 EKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAG 193 (546)
T ss_pred ceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCC
Confidence 458999999999999999999999999999999999999999998 99999999999999998654
No 162
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.43 E-value=3.1e-07 Score=121.58 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=62.7
Q ss_pred eCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 692 APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
+...|+|++|+|++||.|++||+|++||+|||.++|.||.+|+|.++ +++|+.|..|++|++|+.++
T Consensus 146 ~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 213 (590)
T TIGR02927 146 SVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDAG 213 (590)
T ss_pred CcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 34579999999999999999999999999999999999999999988 99999999999999997543
No 163
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.38 E-value=5.3e-07 Score=118.60 Aligned_cols=68 Identities=22% Similarity=0.381 Sum_probs=63.6
Q ss_pred eCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000086 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 692 APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2304)
++.+|+|++|+|++||.|++||++++||+|||+++|.|+.+|+|+.+ +++|+.|..|++|++|+.++.
T Consensus 10 ~~~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~~~ 78 (546)
T TIGR01348 10 DNEEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVGAG 78 (546)
T ss_pred CCCceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecccc
Confidence 34789999999999999999999999999999999999999999988 999999999999999986543
No 164
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.32 E-value=8.5e-07 Score=117.14 Aligned_cols=64 Identities=25% Similarity=0.466 Sum_probs=61.0
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|++|+.+
T Consensus 131 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~ 195 (547)
T PRK11855 131 TEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVA 195 (547)
T ss_pred ceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 359999999999999999999999999999999999999999988 9999999999999999755
No 165
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.29 E-value=1.2e-05 Score=97.12 Aligned_cols=180 Identities=19% Similarity=0.275 Sum_probs=117.5
Q ss_pred HHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCC--C-cCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhcc
Q 000086 153 STKGIIFLGPPATSMAALGDKIGSSLIAQAANV--P-TLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV 229 (2304)
Q Consensus 153 ~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGV--P-tpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I 229 (2304)
.+.|+.|+.| ...||+...+.+.+... | .|++.. +.+.+++.++.++.
T Consensus 5 ~~~~i~~~n~------~~~~Kw~v~~~L~~~~~l~~~LP~T~~-----------------------~~~~~~l~~~L~~y 55 (262)
T PF14398_consen 5 KQKGIPFFNP------GFFDKWEVYKALSRDPELRPYLPETEL-----------------------LTSFEDLREMLNKY 55 (262)
T ss_pred hcCCCEEeCC------CCCCHHHHHHHHHcCCcchhhCCCceE-----------------------cCCHHHHHHHHHHC
Confidence 3478999977 35899999999998542 2 233222 66788888888876
Q ss_pred CCcEEEeecCCCCCcCeEEEC----------------------CHHHHHHHHHHHHhhCCCCcEEEEEeccc----ccee
Q 000086 230 GYPAMIKASWGGGGKGIRKVH----------------------NDDEVRALFKQVQGEVPGSPIFIMKVASQ----SRHL 283 (2304)
Q Consensus 230 GyPVVIKPs~GgGGkGIr~V~----------------------s~eEL~~a~~~~~~e~~~~~i~VEeyI~g----~rei 283 (2304)
+ -|+|||..|++|+||.+++ +.+++...+... .....++||+.|+- ++.+
T Consensus 56 ~-~vylKP~~Gs~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~yIiQq~I~l~~~~gr~f 131 (262)
T PF14398_consen 56 K-SVYLKPDNGSKGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKEL---LGKRRYIIQQGIPLATYDGRPF 131 (262)
T ss_pred C-EEEEEeCCCCCCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHh---cCCCcEEEeCCccccccCCCeE
Confidence 5 5999999999999997653 235555554443 34568999999963 4555
Q ss_pred eEEEE--EcCCCC--EEEeeccccccccccceEEEeC-------CC-CC-----CCHHHHHHHHHHHHHHHHHC----Cc
Q 000086 284 EVQLL--CDQYGN--VAALHSRDCSVQRRHQKIIEEG-------PI-TV-----APLETVKKLEQAARRLAKCV----NY 342 (2304)
Q Consensus 284 eVqvl--~D~~G~--vi~l~~RdcSvqrr~qKiieea-------Pa-~~-----l~~e~~~~m~e~A~rlakal----Gy 342 (2304)
.+-++ -|+.|. +..+..|-. ..+ .++..- |. .. -.....++|.+.|..+++.+ |.
T Consensus 132 D~RvlvqK~~~G~W~vtg~~~Rva---~~~-~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~ 207 (262)
T PF14398_consen 132 DFRVLVQKNGSGKWQVTGIVARVA---KPG-SIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGG 207 (262)
T ss_pred EEEEEEEECCCCCEEEEEEEEEEc---CCC-CceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55555 455553 333333321 111 111110 00 00 12335667777777777665 66
Q ss_pred -eeeeEEEEEEEccCCcEEEEEeccCCCC
Q 000086 343 -VGAATVEYLYSMETGEYYFLELNPRLQV 370 (2304)
Q Consensus 343 -~Ga~tVEfl~d~~~g~~yfLEINpRlqg 370 (2304)
.|-..+|+-+| .+|+++|||+|++++-
T Consensus 208 ~~gElGiDl~iD-~~g~iWliEvN~kP~~ 235 (262)
T PF14398_consen 208 HLGELGIDLGID-KNGKIWLIEVNSKPGK 235 (262)
T ss_pred ceeEEEEEEEEc-CCCCEEEEEEeCCCCc
Confidence 57889999999 5899999999999874
No 166
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.28 E-value=2.1e-06 Score=81.19 Aligned_cols=65 Identities=29% Similarity=0.452 Sum_probs=60.9
Q ss_pred eeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 690 LVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 690 l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
-+++-.|++.+|.+..|+.|.+|++++.+|+|||.+++.+|.+|+|... +.+|+.+..|++|++|
T Consensus 9 ~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 9 GESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 3468889999999999999999999999999999999999999999877 9999999999999874
No 167
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=98.25 E-value=4.5e-06 Score=107.04 Aligned_cols=66 Identities=27% Similarity=0.462 Sum_probs=62.1
Q ss_pred CCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 693 PmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
-..|+|++|+|++||.|++||++++||+|||.+++.||.+|+|..+ +++|+.|..|++|+.|..++
T Consensus 14 ~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 14 MTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 4579999999999999999999999999999999999999999988 99999999999999997544
No 168
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.18 E-value=2.6e-06 Score=112.62 Aligned_cols=65 Identities=28% Similarity=0.525 Sum_probs=61.3
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
..|+|++|+|++||+|++||++++||+|||++++.||.+|+|..+ +++|+.|..|++|+.|+.++
T Consensus 14 ~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~ 79 (547)
T PRK11855 14 VEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAG 79 (547)
T ss_pred ceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecccc
Confidence 469999999999999999999999999999999999999999988 99999999999999997543
No 169
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=98.13 E-value=3.8e-06 Score=107.84 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=61.4
Q ss_pred CCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCc-cCCCCEEEEEecC
Q 000086 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQA-MQAGELIARLDLD 757 (2304)
Q Consensus 693 PmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~-v~~G~~La~l~~~ 757 (2304)
-..|+|++|+|++||.|++||++++||+|||.+++.||.+|+|..+ +++|+. |..|++|++|+.+
T Consensus 11 ~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~ 77 (435)
T TIGR01349 11 MTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEE 77 (435)
T ss_pred cceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEecc
Confidence 3468999999999999999999999999999999999999999988 999999 9999999999754
No 170
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=98.11 E-value=2.1e-06 Score=102.15 Aligned_cols=62 Identities=27% Similarity=0.460 Sum_probs=59.2
Q ss_pred CceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 695 PGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
-|.|-.|+.++||+|++++.+++||+.|...+|.||.+|+|+.+ +++|++|.+|+.|+.|++
T Consensus 86 eG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 86 EGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred cchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence 46777799999999999999999999999999999999999988 999999999999999997
No 171
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.10 E-value=4.8e-06 Score=107.28 Aligned_cols=65 Identities=23% Similarity=0.301 Sum_probs=60.6
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2304)
--|+|.+|+|++||.|++||++++||+|||.+++.||.+|+|.++ +++|+ .|..|++|++|+.+.
T Consensus 15 ~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 15 EEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred ceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 358999999999999999999999999999999999999999988 99995 799999999997543
No 172
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=98.05 E-value=6.8e-06 Score=106.78 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=59.1
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEec
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDL 756 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~-~v~~G~~La~l~~ 756 (2304)
.-|+|++|+|++||.|++||+|++||++|+.+++.||.+|+|.++ +++|+ .|..|++|+++..
T Consensus 125 ~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~ 189 (539)
T PLN02744 125 TEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVE 189 (539)
T ss_pred ceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEcc
Confidence 348999999999999999999999999999999999999999988 99996 7999999998853
No 173
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=97.94 E-value=1.2e-05 Score=107.00 Aligned_cols=66 Identities=26% Similarity=0.363 Sum_probs=61.9
Q ss_pred eCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 692 APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
+...|+|++|+|++||.|++||++++||+|||.+++.||.+|+|..+ +++|+.|..|++|++|+..
T Consensus 13 ~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 13 SVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA 79 (590)
T ss_pred CccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence 44578999999999999999999999999999999999999999988 9999999999999999753
No 174
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=97.87 E-value=0.0002 Score=91.33 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=84.6
Q ss_pred HHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCc-EEEeecCCCCC----cCeE
Q 000086 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGG----KGIR 247 (2304)
Q Consensus 173 K~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGG----kGIr 247 (2304)
-+.++.+++++|||+|++.. +++.+|+.++++++||| +++|+..-.|| -||.
T Consensus 5 E~eak~lL~~yGIpvp~~~~-----------------------~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~ 61 (392)
T PRK14046 5 EYQAKELLASFGVAVPRGAL-----------------------AYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIK 61 (392)
T ss_pred HHHHHHHHHHcCCCCCCceE-----------------------ECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEE
Confidence 45778999999999999876 78999999999999995 59997432323 3789
Q ss_pred EECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcC-CCCEEEee
Q 000086 248 KVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQ-YGNVAALH 299 (2304)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~--------~~---~~i~VEeyI~g~reieVqvl~D~-~G~vi~l~ 299 (2304)
++.|++++.++++++.+.. ++ ..++||+.++.++|+-+.+..|. .|.++.++
T Consensus 62 l~~~~~e~~~a~~~ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~ 125 (392)
T PRK14046 62 LCRTYNEVRDAAEDLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIA 125 (392)
T ss_pred EECCHHHHHHHHHHHhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEE
Confidence 9999999999999987642 12 36899999998899999999986 56666663
No 175
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=97.84 E-value=3.8e-05 Score=90.50 Aligned_cols=106 Identities=25% Similarity=0.407 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCC-----CCcCe
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-----GGKGI 246 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-----GGkGI 246 (2304)
+-..++.++..+|||+|+|.. +++.+|+.++++++||||++|...-. ---||
T Consensus 11 ~e~e~~~lL~~yGI~~~~~~~-----------------------~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV 67 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPTRL-----------------------VTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGV 67 (222)
T ss_dssp -HHHHHHHHHTTT------EE-----------------------ESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-E
T ss_pred CHHHHHHHHHHcCcCCCCeeE-----------------------eCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcE
Confidence 556789999999999999876 88999999999999999999998643 11267
Q ss_pred EE-ECCHHHHHHHHHHHHhhC----C---CCcEEEEEecc-ccceeeEEEEEcC-CCCEEEeec
Q 000086 247 RK-VHNDDEVRALFKQVQGEV----P---GSPIFIMKVAS-QSRHLEVQLLCDQ-YGNVAALHS 300 (2304)
Q Consensus 247 r~-V~s~eEL~~a~~~~~~e~----~---~~~i~VEeyI~-g~reieVqvl~D~-~G~vi~l~~ 300 (2304)
++ +.|++++.++|+++.... + ...++||+.+. ++.|+.|-+..|. +|.++.++.
T Consensus 68 ~L~l~~~~~v~~a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G~ 131 (222)
T PF13549_consen 68 RLNLNSPEEVREAFERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFGL 131 (222)
T ss_dssp EEEE-SHHHHHHHHHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEETTTEEEEEEEE
T ss_pred EECCCCHHHHHHHHHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEcC
Confidence 77 889999999999887553 2 25799999998 7899999999986 677777654
No 176
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=97.83 E-value=0.00018 Score=79.95 Aligned_cols=109 Identities=21% Similarity=0.365 Sum_probs=69.5
Q ss_pred eeeEeecCeEEEEEEEeeCCCeEEEeeCCeEEEEEEEEecCCceEEEeCCee----------------------------
Q 000086 607 QVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNS---------------------------- 658 (2304)
Q Consensus 607 ~vel~~~g~~y~v~v~~~~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s---------------------------- 658 (2304)
.+.+++||..|.+++.+.+...|.+++||+.|+|+++.+.... ..++..
T Consensus 3 ~~~~~~~g~~~~v~v~~~~~~~~~itvnG~~y~V~vee~~~~~---~~~~~~~~~~~~~~~p~~~~~p~~~~~p~~~~~~ 79 (153)
T PRK05641 3 KVKVIVDGVEYEVEVEELGPGKFRVSFEGKTYEVEAKGLGIDL---SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAP 79 (153)
T ss_pred eEEEEECCEEEEEEEEeecCccEEEEECCEEEEEEEEEccccc---ccccccccccccccCcccccCcccccccCccccC
Confidence 4678899999999999988889999999999999987754211 000000
Q ss_pred -----EEEEeeecccceEEEE-eCc-------eeccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEE
Q 000086 659 -----HVVYAEEEAAGTRLLI-DGR-------TCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 659 -----~~v~~~ee~~~~~v~v-~g~-------t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~i 718 (2304)
..+...-...-..+.+ .|. -+.++...-...|.||..|+|.++++++||.|+.||+|+.|
T Consensus 80 ~~~~~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 80 ASAGENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCCCCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 0000000000000111 111 11112222236799999999999999999999999999986
No 177
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=97.78 E-value=4.5e-05 Score=94.96 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=60.6
Q ss_pred CceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCC-CccCCCCEEEEEecCC
Q 000086 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEG-QAMQAGELIARLDLDD 758 (2304)
Q Consensus 695 PGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G-~~v~~G~~La~l~~~~ 758 (2304)
-|+|++|..++||.+.+||.|+|||++|..|++.++.+|.+.+| +.+| ..|..|.+|+.|..++
T Consensus 52 eGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~e 117 (470)
T KOG0557|consen 52 EGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVEDE 117 (470)
T ss_pred CCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEeccc
Confidence 59999999999999999999999999999999999999999988 9999 8999999999987544
No 178
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=97.74 E-value=0.00033 Score=89.62 Aligned_cols=101 Identities=16% Similarity=0.275 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhcc---CCcEEEeec--CCCCC---
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV---GYPAMIKAS--WGGGG--- 243 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I---GyPVVIKPs--~GgGG--- 243 (2304)
.-+.++++++++|||+|++.. +.+.+|+.+.++++ ++|+|+|+. .||-|
T Consensus 31 ~EyqaK~LL~~~GIpvp~~~v-----------------------a~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~ 87 (422)
T PLN00124 31 HEYQGAELMSKYGVNVPKGAA-----------------------ASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGT 87 (422)
T ss_pred CHHHHHHHHHHcCCCCCCcee-----------------------eCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccc
Confidence 467889999999999999776 78999999999998 699999999 44433
Q ss_pred ------cCeEEECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcC--CCCEE
Q 000086 244 ------KGIRKVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQ--YGNVA 296 (2304)
Q Consensus 244 ------kGIr~V~s~eEL~~a~~~~~~e~--------~~---~~i~VEeyI~g~reieVqvl~D~--~G~vi 296 (2304)
-||.++++ +++.++++++.+.. .+ ..++|++.+...+|+-+.+..|. .|.++
T Consensus 88 hKs~~~GGV~l~~~-eea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvi 158 (422)
T PLN00124 88 FKNGLKGGVHIVKK-DKAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLI 158 (422)
T ss_pred cccccCCeEEECCH-HHHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEE
Confidence 33667766 99999999887541 11 25787777777789999999996 35555
No 179
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=97.74 E-value=0.00015 Score=84.42 Aligned_cols=100 Identities=16% Similarity=0.250 Sum_probs=73.8
Q ss_pred HHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCc-EEEeecCCCCCc----CeE
Q 000086 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGK----GIR 247 (2304)
Q Consensus 173 K~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGk----GIr 247 (2304)
-+.++++++++|||+|++.. +++++|+.++++++|.| +||||---.||+ ||.
T Consensus 4 EyqaK~ll~~~gi~vp~g~~-----------------------a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk 60 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRGVV-----------------------ATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVK 60 (202)
T ss_dssp HHHHHHHHHCTT----SEEE-----------------------ESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEE
T ss_pred HHHHHHHHHHcCCCCCCeee-----------------------cCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCcee
Confidence 36789999999999999665 78999999999999985 799997665555 689
Q ss_pred EECCHHHHHHHHHHHHhhCC--------C---CcEEEEEeccccceeeEEEEEcCCCCE
Q 000086 248 KVHNDDEVRALFKQVQGEVP--------G---SPIFIMKVASQSRHLEVQLLCDQYGNV 295 (2304)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~~--------~---~~i~VEeyI~g~reieVqvl~D~~G~v 295 (2304)
+++|++|+.++..++.+..- | ..++||++++..+|+-+.+..|.....
T Consensus 61 ~~~s~~ea~~~a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~ 119 (202)
T PF08442_consen 61 IAKSPEEAKEAAKEMLGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRG 119 (202)
T ss_dssp EESSHHHHHHHHHTTTTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTE
T ss_pred ecCCHHHHHHHHHHHhCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCc
Confidence 99999999999988764321 1 367999999999999999998876443
No 180
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.66 E-value=0.0069 Score=80.34 Aligned_cols=234 Identities=13% Similarity=0.100 Sum_probs=122.0
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecC--cceEe--------c-ChHHHHHh-----hcc----cccccccccCcc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD--QPIIL--------T-GFSALNKL-----LGR----EVYSSHMQLGGP 1838 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~--~~i~l--------t-G~~al~~~-----lG~----~vy~s~~~lGG~ 1838 (2304)
..|+|+.|.|.|+|||..++..||++|+.++ +.+.+ . |......+ +|. ++.-+.+.+.+.
T Consensus 123 pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~Ae 202 (550)
T PRK08184 123 GLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGK 202 (550)
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHH
Confidence 4699999999999999999999999999976 33322 2 11112222 222 111122333433
Q ss_pred eeecccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCCCccccC-CCCChHHHhhcccCCCCCccccc
Q 000086 1839 KIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPE-NSCDPRAAICGFLDNNGKWIGGI 1917 (2304)
Q Consensus 1839 ~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~~~~~P~-~~yD~r~~i~~~~d~~~~~~~gl 1917 (2304)
+ ...-|++|.+++++ +..+.+.+|..-+-.. +| ...+..-+.+.|- +..|. + |+
T Consensus 203 e-A~~~GLVd~vv~~d-~l~~~a~~~A~~ia~~----~~----~~~~~~~~~~~~~~~~~~~----------~-----~~ 257 (550)
T PRK08184 203 R-AVDWRLVDEVVKPS-KFDAKVAERAAELAAA----SD----RPADAKGVALTPLERTIDA----------D-----GL 257 (550)
T ss_pred H-HHHcCCccEeeCHH-HHHHHHHHHHHHHHhC----CC----CCCCCCccccccccccccC----------C-----ce
Confidence 3 34689999999754 4445555543322111 11 1112223334442 22221 1 22
Q ss_pred ccCCCceecccCCCCeEEEEEEEECCeEEEEEE-EecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHh
Q 000086 1918 FDKDSFVETLEGWARTVVTGRARLGGIPVGIVA-VETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDF 1996 (2304)
Q Consensus 1918 ~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA-~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~ 1996 (2304)
..+. +..-.- ..|. |+.|. |.+.. .|+-+..-++..--..|.+.-.....++++.+
T Consensus 258 ~~~~------------~~v~~~-~~~~-va~itlnrP~~---------~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~ 314 (550)
T PRK08184 258 RYRH------------VDVEID-RAAR-TATITVKAPTA---------AQPADIAGIVAAGAAWWPLQMARELDDAILHL 314 (550)
T ss_pred eeEE------------EEEEEE-ccCC-EEEEEEeCccc---------ccccccccccccccccCCHHHHHHHHHHHHHH
Confidence 2211 111111 2232 33333 31110 01100001111112478999999999999988
Q ss_pred hc--cCCCEEEEecCC--CCCCchh--hh-------hhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCch-hhhhcc
Q 000086 1997 NR--EELPLFILANWR--GFSGGQR--DL-------FEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG-AWVVVD 2060 (2304)
Q Consensus 1997 ~~--~~lPLv~l~d~~--Gf~~G~~--~e-------~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GG-a~vv~~ 2060 (2304)
.. ..+-.|+|.-.. .|+.|.. .. ..+.......++..+..+.+|+|..|-+|...+|| .-+++.
T Consensus 315 ~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLala 392 (550)
T PRK08184 315 RTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALA 392 (550)
T ss_pred HhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHH
Confidence 64 577778887654 3777765 11 01222334456778899999999999424444455 444444
No 181
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.66 E-value=3.9e-05 Score=84.44 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=47.5
Q ss_pred CeeeeCCCceeEEEEcc-CCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 688 SKLVAETPCKLLRYLVS-DGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~-~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
+.....+.|+|+.+.+. +|++|++||++++||+|||+.+|.||.+|+|..+
T Consensus 36 td~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~v 87 (144)
T PRK13380 36 TDYAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEV 87 (144)
T ss_pred CHHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEE
Confidence 45678899999999987 8999999999999999999999999999999887
No 182
>PLN02235 ATP citrate (pro-S)-lyase
Probab=97.55 E-value=0.00088 Score=84.85 Aligned_cols=101 Identities=12% Similarity=0.151 Sum_probs=81.3
Q ss_pred HHHHHHHHHC-----CCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhc---cCCc-EEEeecCCCCCc
Q 000086 174 IGSSLIAQAA-----NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQV---VGYP-AMIKASWGGGGK 244 (2304)
Q Consensus 174 ~~sr~laq~a-----GVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~---IGyP-VVIKPs~GgGGk 244 (2304)
+.++++++++ |||+|.... ++++.+|+.+++++ +|.| +||||---.||+
T Consensus 9 yqaK~ll~~~~~~~~gipvP~~~v----------------------~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgR 66 (423)
T PLN02235 9 YDSKRLLKEHLKRLAGIDLPIRSA----------------------QVTESTDFNELANKEPWLSSTKLVVKPDMLFGKR 66 (423)
T ss_pred HHHHHHHHHhhcccCCCCCCCCee----------------------ccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCC
Confidence 4567888887 999998654 24889999999888 8876 599998877766
Q ss_pred C----eEEECCHHHHHHHHHHHHhhC------CC--CcEEEEEeccccceeeEEEEEcCCCCEE
Q 000086 245 G----IRKVHNDDEVRALFKQVQGEV------PG--SPIFIMKVASQSRHLEVQLLCDQYGNVA 296 (2304)
Q Consensus 245 G----Ir~V~s~eEL~~a~~~~~~e~------~~--~~i~VEeyI~g~reieVqvl~D~~G~vi 296 (2304)
| |.+++|++|+.++.+++.+.. .| ..++||++++-.+|+-+.++.|.....+
T Consensus 67 GKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~i 130 (423)
T PLN02235 67 GKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSI 130 (423)
T ss_pred cccCceEEeCCHHHHHHHHHHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEE
Confidence 4 899999999999999887543 11 2579999999889999999998876653
No 183
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.55 E-value=0.017 Score=76.44 Aligned_cols=105 Identities=16% Similarity=0.238 Sum_probs=68.0
Q ss_pred ccccccCCCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCC-C-CCCchhhh---------hhhHHHHHHHHHHHHHcC
Q 000086 1971 ERVVPQAGQVWFPDSATKTAQALMDFNR--EELPLFILANWR-G-FSGGQRDL---------FEGILQAGSTIVENLRTY 2037 (2304)
Q Consensus 1971 ~~~~~~~gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~-G-f~~G~~~e---------~~gilk~ga~iv~al~~~ 2037 (2304)
..++.|....|.++-......++..+.+ ..+-+|+|.=.. . |+.|..-. ....+.....++..+..+
T Consensus 285 ~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (546)
T TIGR03222 285 AAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVS 364 (546)
T ss_pred ccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcC
Confidence 3455565678999999999999998863 677777776542 2 77665421 012223334578889999
Q ss_pred CCCEEEEE-cCCCcCCch-hhhhcccccCCccceeec-------ccCcEEEeeC
Q 000086 2038 KQPVFVYI-PMMAELRGG-AWVVVDSRINSDHIEMYA-------DRTAKGNVLE 2082 (2304)
Q Consensus 2038 ~vP~i~~I-~~~ge~~GG-a~vv~~~~i~~d~~~~~A-------~p~A~~gvl~ 2082 (2304)
.+|+|..| - |...+|| .-+++. +|+ .+| .++++++.-+
T Consensus 365 ~kpviAav~~-G~a~GgG~~eLala----cD~--~ia~~~~~~~~~~a~f~~~e 411 (546)
T TIGR03222 365 SRSLFALIEP-GSCFAGTLAELAFA----ADR--SYMLAFPDNNDPEPAITLSE 411 (546)
T ss_pred CCCEEEEECC-CeEeHHHHHHHHHh----Cce--eeecCCCCCCCCCCEEeCCc
Confidence 99999999 7 3344445 444444 355 666 6666665533
No 184
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=97.37 E-value=0.00026 Score=73.08 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=43.4
Q ss_pred eeeCCCceeEEE-EccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 690 LVAETPCKLLRY-LVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 690 l~APmPGkvv~~-~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
....+.|+|+.+ ++++|++|++||++++||+||+..+|.||.+|+|..+
T Consensus 23 ~~~~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~ 72 (96)
T cd06848 23 YAQDLLGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEV 72 (96)
T ss_pred HHHhhCCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEE
Confidence 445678999995 4555999999999999999999999999999999877
No 185
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=97.37 E-value=0.0018 Score=74.84 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=71.2
Q ss_pred CCccCHHHHHHHHHHHHHhhccCCC-EEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcC--CCcCCch
Q 000086 1978 GQVWFPDSATKTAQALMDFNREELP-LFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPM--MAELRGG 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~~lP-Lv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~--~ge~~GG 2054 (2304)
.|.+.+..+....+.++.+...+.. |++..|+|| |.+..+-.+.+++..++.|++++|.| |-.+.||
T Consensus 7 ~g~I~~~~~~~l~~~l~~a~~~~~~~vvl~InSpG----------G~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG 76 (187)
T cd07020 7 NGAITPATADYLERAIDQAEEGGADALIIELDTPG----------GLLDSTREIVQAILASPVPVVVYVYPSGARAASAG 76 (187)
T ss_pred eeEEChHHHHHHHHHHHHHHhCCCCEEEEEEECCC----------CCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHH
Confidence 3677788888999999988776644 677779999 44445567788888899999999975 4555667
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCcc
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
+|+++.+ |. ++|.|+|++|..+|-
T Consensus 77 ~~iala~----D~--iva~p~a~~g~~~~~ 100 (187)
T cd07020 77 TYILLAA----HI--AAMAPGTNIGAAHPV 100 (187)
T ss_pred HHHHHhC----Cc--eeECCCCcEEecccc
Confidence 7877765 66 899999999998886
No 186
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.36 E-value=0.00036 Score=87.09 Aligned_cols=34 Identities=6% Similarity=0.129 Sum_probs=31.5
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|.||.+|+|.+++|++||+|++||+|+.|+.
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~ 75 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP 75 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 3568999999999999999999999999999975
No 187
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.32 E-value=0.00057 Score=87.92 Aligned_cols=73 Identities=16% Similarity=0.314 Sum_probs=63.3
Q ss_pred CCeeeeCCCceeEEEE-ccCCCEEccCCcEEEEEc-------------c-------------------------------
Q 000086 687 PSKLVAETPCKLLRYL-VSDGSHIDADTPYAEVEV-------------M------------------------------- 721 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~-V~~Gd~V~~G~~l~~iEa-------------M------------------------------- 721 (2304)
...|.|+.+|.|.+++ +++||+|++||+|++|++ .
T Consensus 123 ~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~ 202 (409)
T PRK09783 123 YAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIA 202 (409)
T ss_pred eEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4579999999999998 999999999999999982 0
Q ss_pred ----ccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000086 722 ----KMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 722 ----Km~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2304)
.-...|+||.+|+|... +.+|+.|.+|++|++|...++
T Consensus 203 ~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~~ 245 (409)
T PRK09783 203 TRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDP 245 (409)
T ss_pred cCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCCe
Confidence 01347999999999988 999999999999999975554
No 188
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=97.31 E-value=0.0034 Score=71.47 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=72.0
Q ss_pred CccCHHHHHHHHHHHHHhhccC-CCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEc-CCCcCCc-hh
Q 000086 1979 QVWFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIP-MMAELRG-GA 2055 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~-~~ge~~G-Ga 2055 (2304)
|.+.+..+.-..|.++.|...+ -+|++..|+|| |.+..+-.|.+++...++|+++++. ++|.+.+ |+
T Consensus 8 G~I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPG----------G~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~ 77 (172)
T cd07015 8 GQITSYTYDQFDRYITIAEQDNAEAIIIELDTPG----------GRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGT 77 (172)
T ss_pred eEECHhHHHHHHHHHHHHhcCCCCeEEEEEECCC----------CCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHH
Confidence 6788888888899999987764 57999999999 4555667788999999999999995 4444433 66
Q ss_pred hhhcccccCCccceeecccCcEEEeeCccc
Q 000086 2056 WVVVDSRINSDHIEMYADRTAKGNVLEPEG 2085 (2304)
Q Consensus 2056 ~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg 2085 (2304)
|+++.. |. .++.|++++|..+|-+
T Consensus 78 ~I~~a~----~~--i~m~p~s~iG~~~pi~ 101 (172)
T cd07015 78 YIALGS----HL--IAMAPGTSIGACRPIL 101 (172)
T ss_pred HHHHhc----Cc--eEECCCCEEEEccccc
Confidence 666664 55 8999999999999954
No 189
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=97.30 E-value=0.0015 Score=80.92 Aligned_cols=103 Identities=17% Similarity=0.306 Sum_probs=83.9
Q ss_pred HHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccC-CcEEEeecCCCCCc----CeE
Q 000086 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASWGGGGK----GIR 247 (2304)
Q Consensus 173 K~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~GgGGk----GIr 247 (2304)
-+.++++++++|||+|+... +.+++|+.++++++| .|+|+|+---.||+ ||+
T Consensus 5 EYqaKelf~~~GiPvp~g~v-----------------------~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk 61 (387)
T COG0045 5 EYQAKELFAKYGIPVPPGYV-----------------------ATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVK 61 (387)
T ss_pred HHHHHHHHHHcCCCCCCcee-----------------------eeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceE
Confidence 36789999999999999655 789999999999998 89999997644444 799
Q ss_pred EECCHHHHHHHHHHHHh----hCC-C---CcEEEEEecc-ccceeeEEEEEcCCCCEEEe
Q 000086 248 KVHNDDEVRALFKQVQG----EVP-G---SPIFIMKVAS-QSRHLEVQLLCDQYGNVAAL 298 (2304)
Q Consensus 248 ~V~s~eEL~~a~~~~~~----e~~-~---~~i~VEeyI~-g~reieVqvl~D~~G~vi~l 298 (2304)
++.|.+|..++.+.+.+ ... + ..++||+.++ -.+|+-+.++.|.....+.+
T Consensus 62 ~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~ 121 (387)
T COG0045 62 LAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVL 121 (387)
T ss_pred EeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEE
Confidence 99999999999999886 322 2 3689999998 44499999999887655443
No 190
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.27 E-value=0.00031 Score=83.25 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=91.3
Q ss_pred CCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCC-----Ccc---hHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCC
Q 000086 1620 GLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAG-----SFG---PREDAFFLAVTDLACAKKLPLIYLAANSGARI 1691 (2304)
Q Consensus 1620 g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~G-----S~g---~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi 1691 (2304)
+..+-.+|+++..+ +|++|+|++++-..-.. .|| |..=+|-.|++++|.+.++|+|.|.|..||-.
T Consensus 91 f~dD~Aivgglar~------~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~GAyp 164 (317)
T COG0825 91 FADDPAIVGGLARF------GGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPGAYP 164 (317)
T ss_pred cCcChhheeeeeeE------CCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCC
Confidence 33455589999876 99999999998766222 355 99999999999999999999999999999998
Q ss_pred CchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccc-cccccc
Q 000086 1692 GVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT-GSGAIA 1770 (2304)
Q Consensus 1692 ~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~-~SG~ia 1770 (2304)
+...|= .|- -+.++ +||. .++
T Consensus 165 G~~AEE---------------rGQ---------~eAIA-------------------------------~nL~em~~--- 186 (317)
T COG0825 165 GIGAEE---------------RGQ---------SEAIA-------------------------------RNLREMAR--- 186 (317)
T ss_pred Ccchhh---------------ccc---------HHHHH-------------------------------HHHHHHhC---
Confidence 854321 110 00111 0110 111
Q ss_pred cccccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh
Q 000086 1771 GAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF 1817 (2304)
Q Consensus 1771 g~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~ 1817 (2304)
-.+|+||+|.|--.+|||.--..||+|.|-+++..-+-.|
T Consensus 187 -------LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySVisP 226 (317)
T COG0825 187 -------LKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSVISP 226 (317)
T ss_pred -------CCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeeecCh
Confidence 1479999999988888888778899999988875555444
No 191
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.26 E-value=0.00041 Score=73.15 Aligned_cols=47 Identities=26% Similarity=0.229 Sum_probs=41.0
Q ss_pred eCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 692 AETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 692 APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
.-+-|.|+.+.. ++|++|++||++++||+||+..+|.||.+|+|..+
T Consensus 26 q~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~v 73 (110)
T TIGR03077 26 QENLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEV 73 (110)
T ss_pred HHhcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEE
Confidence 345577777765 56999999999999999999999999999999887
No 192
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=97.25 E-value=0.00029 Score=76.40 Aligned_cols=67 Identities=22% Similarity=0.382 Sum_probs=44.7
Q ss_pred ccccCCCceecccCC----CCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHH
Q 000086 1916 GIFDKDSFVETLEGW----ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1991 (2304)
Q Consensus 1916 gl~D~gsF~E~~~~~----a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~ 1991 (2304)
.+|| .|+|+.++- .+++|+|+|+++|+||.||+.+.+- +..|++..+ .|+..|.+++|+.|
T Consensus 75 ~l~~--df~ElhGDR~~~dD~AivgG~a~~~g~~V~vig~~KG~------------~~~e~~~rN-FGm~~PeGYRKAlR 139 (145)
T PF03255_consen 75 NLFD--DFIELHGDRLFGDDPAIVGGIARFDGQPVTVIGQQKGR------------DTKENIKRN-FGMPHPEGYRKALR 139 (145)
T ss_dssp HH-E--EEEE----SSS---TTEEEEEEEETTEEEEEEEE---S------------SCCHHHHTG-GG---HHHHHHHHH
T ss_pred HHhC--cCeEecCCccCCcCccceeeeEEECCEEEEEEEEecCc------------CHHHHHHHc-CCCCCcchHHHHHH
Confidence 3777 599998764 6799999999999999999998652 234444444 67999999999999
Q ss_pred HHHHhh
Q 000086 1992 ALMDFN 1997 (2304)
Q Consensus 1992 ~i~~~~ 1997 (2304)
.++.|+
T Consensus 140 lmk~Ae 145 (145)
T PF03255_consen 140 LMKQAE 145 (145)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999874
No 193
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.24 E-value=0.00053 Score=86.29 Aligned_cols=34 Identities=6% Similarity=0.176 Sum_probs=31.8
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|.++++|.|.+++|++||+|++||+|+.|+.
T Consensus 48 ~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 48 VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 4568999999999999999999999999999986
No 194
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.19 E-value=0.00071 Score=73.31 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=57.1
Q ss_pred eeeCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe----eCCCCccC---CCC-EEEEEecCCC
Q 000086 690 LVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAMQ---AGE-LIARLDLDDP 759 (2304)
Q Consensus 690 l~APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i----~~~G~~v~---~G~-~La~l~~~~~ 759 (2304)
......|+|+.+.. +.|++|++||+++.||+||...+|.||.+|+|..+ ....+.|+ .|+ -|++|.+.++
T Consensus 31 ~a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~~ 109 (127)
T PRK01202 31 HAQEQLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSDE 109 (127)
T ss_pred HHHhhcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCCH
Confidence 44567888887754 56999999999999999999999999999999887 33455666 565 8888887764
No 195
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.18 E-value=0.001 Score=82.28 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=62.4
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccc--------------------------------------------
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK-------------------------------------------- 722 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMK-------------------------------------------- 722 (2304)
...|.||.+|+|.+++|++||+|++||+|+.++.--
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~ 105 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLD 105 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 357999999999999999999999999999997410
Q ss_pred ---------------------------cceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 723 ---------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 723 ---------------------------m~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
-...|+||.+|+|..+ +++|+.+.+|++|+.|...+
T Consensus 106 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 106 DAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLD 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCC
Confidence 0236999999999988 99999999999999987554
No 196
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=97.10 E-value=0.0011 Score=75.45 Aligned_cols=65 Identities=17% Similarity=0.310 Sum_probs=43.4
Q ss_pred cCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC-HHHHHHHHHHHHhhCCCCcEEEEEeccccce
Q 000086 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN-DDEVRALFKQVQGEVPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 216 V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s-~eEL~~a~~~~~~e~~~~~i~VEeyI~g~re 282 (2304)
..+.+++.++.++.|. +|+||..|.||+||.++.. ...+...++.+.... ..++++|+|++.-++
T Consensus 18 s~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~-~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 18 SRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNG-ERPVMVQPFLPEIKE 83 (173)
T ss_dssp ES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTT-TS-EEEEE--GGGGG
T ss_pred ECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcC-CccEEEEeccccccC
Confidence 4678999999999998 9999999999999999987 445666665554322 358999999976543
No 197
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.09 E-value=0.00098 Score=82.76 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=61.6
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEccc----------------------------------------------
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK---------------------------------------------- 722 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMK---------------------------------------------- 722 (2304)
.|.++.+|+|.++.|++||+|++||+|+.|+.=.
T Consensus 49 ~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~ 128 (310)
T PRK10559 49 AIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQAN 128 (310)
T ss_pred EEccCCceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 3889999999999999999999999999998610
Q ss_pred ------------------------cceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000086 723 ------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 723 ------------------------m~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2304)
=...|+||.+|+|..+ +++|+.|.+|++|+.|...+.
T Consensus 129 ~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~~~ 190 (310)
T PRK10559 129 NVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQNS 190 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeCCC
Confidence 0247999999999988 999999999999998865543
No 198
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=97.07 E-value=0.0025 Score=75.66 Aligned_cols=67 Identities=21% Similarity=0.256 Sum_probs=61.1
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCC
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~~~ 758 (2304)
..-|+||.+|.+.. .++-||.|+|||+|+.|+. .+|+||.+|+|.-++++|..|.+|.-|+.|++-.
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGlirdG~~V~~G~Ki~dIDPR~ 230 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGLIHEGLTVTEGLKIGDVDPRG 230 (256)
T ss_pred eEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEEecCCCCcCCCCEEEEECCCC
Confidence 45799999996655 8999999999999999985 7999999999999999999999999999997664
No 199
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.07 E-value=0.0095 Score=71.44 Aligned_cols=170 Identities=15% Similarity=0.158 Sum_probs=105.7
Q ss_pred HHHHhcCHHHHHHHHHHCC--CCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCC
Q 000086 166 SMAALGDKIGSSLIAQAAN--VPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGG 243 (2304)
Q Consensus 166 am~~lgDK~~sr~laq~aG--VPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGG 243 (2304)
.+..|.||...|...++.+ ...||..+ ..++++++.- ..+.-++||||..|+|+
T Consensus 14 ~~~~~~DK~~VR~yv~~~~g~~~l~pll~----------------------v~~~~~~i~~--~~Lp~~fViK~nhgsg~ 69 (239)
T PF14305_consen 14 LFTKLADKYAVREYVEEKIGEEYLPPLLG----------------------VYDNPDDIDF--DSLPDKFVIKPNHGSGS 69 (239)
T ss_pred cceecchHHHHHHHHHHhCCCceECceee----------------------cCCChhhhhh--hcCCCCEEEEEecCCCc
Confidence 3567899999999999885 34455433 1234444322 34557899999999998
Q ss_pred cCeEEECCHHHHHHHHHHHH---h--------hCC----CCcEEEEEeccccc-----eeeEEEEEcCCCCEEE------
Q 000086 244 KGIRKVHNDDEVRALFKQVQ---G--------EVP----GSPIFIMKVASQSR-----HLEVQLLCDQYGNVAA------ 297 (2304)
Q Consensus 244 kGIr~V~s~eEL~~a~~~~~---~--------e~~----~~~i~VEeyI~g~r-----eieVqvl~D~~G~vi~------ 297 (2304)
.+|....+.-+...+...+. . |.. ...+|+|++++... .+-+.++. |.+..
T Consensus 70 ~~i~~dk~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~---G~~~~i~v~~~ 146 (239)
T PF14305_consen 70 NIIVRDKSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFN---GKPKFIQVDSD 146 (239)
T ss_pred EEEEeCCcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEEC---CEEEEEEEEeC
Confidence 88887665444333332221 1 110 24799999996532 34333332 32222
Q ss_pred --------eeccccccccccceEEEe--CCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccC
Q 000086 298 --------LHSRDCSVQRRHQKIIEE--GPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367 (2304)
Q Consensus 298 --------l~~RdcSvqrr~qKiiee--aPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpR 367 (2304)
++.+|-... .+... .......|+..++|.++|.+|++.+.| ..|||... ++++||=|+-..
T Consensus 147 r~~~~~~~~yd~dw~~l----~~~~~~~~~~~~~kP~~l~emi~iA~~Ls~~f~f---vRVDlY~~--~~~iyFGElTf~ 217 (239)
T PF14305_consen 147 RFGNHKRNFYDRDWNRL----PFRSDYPPDEDIPKPKNLEEMIEIAEKLSKGFPF---VRVDLYNV--DGKIYFGELTFT 217 (239)
T ss_pred CCCCeEEEEECcccCCC----ccccCCCCCCCCCCChhHHHHHHHHHHHccCCCE---EEEEEEEe--CCcEEEEeeecC
Confidence 222221110 01001 122334577889999999999999876 48999988 899999999998
Q ss_pred CCCC
Q 000086 368 LQVE 371 (2304)
Q Consensus 368 lqge 371 (2304)
+++.
T Consensus 218 p~~G 221 (239)
T PF14305_consen 218 PGAG 221 (239)
T ss_pred CCCc
Confidence 8765
No 200
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=97.05 E-value=0.0065 Score=69.69 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=74.0
Q ss_pred CCccCHHHHHHHHHHHHHhhccC-CCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhh
Q 000086 1978 GQVWFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAW 2056 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~ 2056 (2304)
.|.+.+..+.-..|.++.+.+.+ -.|++..|+|| |.+..+-.|.+.+..+++|++++|. +-...||+|
T Consensus 7 ~g~I~~~~~~~l~~~l~~a~~~~~~~ivl~inspG----------G~v~~~~~I~~~l~~~~~pvva~V~-g~AaSaG~~ 75 (178)
T cd07021 7 EGEIDPGLAAFVERALKEAKEEGADAVVLDIDTPG----------GRVDSALEIVDLILNSPIPTIAYVN-DRAASAGAL 75 (178)
T ss_pred eeEECHHHHHHHHHHHHHHHhCCCCeEEEEEECcC----------CCHHHHHHHHHHHHhCCCCEEEEEC-CchHHHHHH
Confidence 36888888999999999998876 46888899999 5566677889999999999999998 344455777
Q ss_pred hhcccccCCccceeecccCcEEEeeCccc
Q 000086 2057 VVVDSRINSDHIEMYADRTAKGNVLEPEG 2085 (2304)
Q Consensus 2057 vv~~~~i~~d~~~~~A~p~A~~gvl~Peg 2085 (2304)
+++.+ |. +++.|++++|..+|-.
T Consensus 76 ia~a~----d~--i~m~p~a~iG~~~~v~ 98 (178)
T cd07021 76 IALAA----DE--IYMAPGATIGAAEPIP 98 (178)
T ss_pred HHHhC----Ce--EEECCCCeEecCeeEc
Confidence 77764 66 8999999999988853
No 201
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=96.96 E-value=0.003 Score=77.74 Aligned_cols=178 Identities=15% Similarity=0.259 Sum_probs=102.4
Q ss_pred CCeEECCCHHHHHHhcCHHHHHHHHHHC-------CCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhc
Q 000086 156 GIIFLGPPATSMAALGDKIGSSLIAQAA-------NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQV 228 (2304)
Q Consensus 156 GI~fiGPs~eam~~lgDK~~sr~laq~a-------GVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~ 228 (2304)
.+.++ -|+++++.+.|+..+.+++++. +|.+|++.. |.. . ..+..+.. ..+.
T Consensus 78 ~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~-------------i~~-----~-~~~~~~~l-~~ag 136 (307)
T PF05770_consen 78 EVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVV-------------INS-----D-AESLPELL-KEAG 136 (307)
T ss_dssp TSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEE-------------ESS-----S-HCCHHHHH-HCTT
T ss_pred CeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEE-------------EcC-----C-HHHHHHHH-HHCC
Confidence 56666 7889999999999999999885 334444322 110 0 12233322 2357
Q ss_pred cCCcEEEeecCCCC---CcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc-cceeeEEEEEcCCCCEEEeecccc-
Q 000086 229 VGYPAMIKASWGGG---GKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ-SRHLEVQLLCDQYGNVAALHSRDC- 303 (2304)
Q Consensus 229 IGyPVVIKPs~GgG---GkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g-~reieVqvl~D~~G~vi~l~~Rdc- 303 (2304)
+.||+|+||....| +..|.++.+++.|.+. ..|+++|||+.. +.-+-|-+++|.. .+..|..
T Consensus 137 L~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L---------~~P~VlQeFVNHggvLfKVyVvGd~v----~~v~R~SL 203 (307)
T PF05770_consen 137 LKFPLICKPLVACGSADSHKMAIVFNEEGLKDL---------KPPCVLQEFVNHGGVLFKVYVVGDKV----FVVKRPSL 203 (307)
T ss_dssp S-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT-----------SSEEEEE----TTEEEEEEEETTEE----EEEEEE--
T ss_pred CcccEEeeehhhcCCccceEEEEEECHHHHhhc---------CCCEEEEEeecCCCEEEEEEEecCEE----EEEECCCC
Confidence 88999999988654 5679999999998752 359999999964 3456666666542 2211110
Q ss_pred ---cc---ccc-----cceEE-----------EeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccC-CcEE
Q 000086 304 ---SV---QRR-----HQKII-----------EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET-GEYY 360 (2304)
Q Consensus 304 ---Sv---qrr-----~qKii-----------eeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~-g~~y 360 (2304)
+. .+. .+.+- ...+.. ......+.+.+.|..+-+++|+ ..+++|++.+..+ |++|
T Consensus 204 pn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~-~~~p~~~~v~~la~~LR~~lgL-~LFgfDvI~~~~t~~~~~ 281 (307)
T PF05770_consen 204 PNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQ-VEMPPDELVEKLAKELRRALGL-TLFGFDVIRENGTGGRYY 281 (307)
T ss_dssp ----SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTT-TTS--HHHHHHHHHHHHHHHT--SEEEEEEEEGCCT-SSEE
T ss_pred CCCCcccccccccceeccccCCccccCchhhcccCccc-ccCCCHHHHHHHHHHHHHHhCc-ceeeeEEEEEcCCCCcEE
Confidence 00 000 00000 000111 1111245688899999999998 4778999998777 7899
Q ss_pred EEEeccCCC
Q 000086 361 FLELNPRLQ 369 (2304)
Q Consensus 361 fLEINpRlq 369 (2304)
++.||-=++
T Consensus 282 VIDINyFPg 290 (307)
T PF05770_consen 282 VIDINYFPG 290 (307)
T ss_dssp EEEEEES--
T ss_pred EEEeccCCC
Confidence 999998765
No 202
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=96.95 E-value=0.00084 Score=61.11 Aligned_cols=37 Identities=8% Similarity=0.144 Sum_probs=32.3
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccc
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMC 724 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~ 724 (2304)
..|.||++|+|.++.|++||+|++||+|++|+.-...
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~~ 39 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPDLQ 39 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHHHH
Confidence 3588999999999999999999999999999875443
No 203
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=96.94 E-value=0.0016 Score=81.42 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=30.9
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
..|.||++|.|.+++|++||.|++||+|+.|+.
T Consensus 44 i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~ 76 (331)
T PRK03598 44 VNLGFRVGGRLASLAVDEGDAVKAGQVLGELDA 76 (331)
T ss_pred EEeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence 358999999999999999999999999999974
No 204
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=96.92 E-value=0.00078 Score=80.47 Aligned_cols=62 Identities=18% Similarity=0.355 Sum_probs=59.3
Q ss_pred eeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 697 KLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 697 kvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
.|.+|.|++||+|+.=|+++++.+.|...+|++-.+|+|+++ .++++....|++|..++.++
T Consensus 80 ~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~ 142 (474)
T KOG0558|consen 80 TVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVED 142 (474)
T ss_pred eeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeecc
Confidence 588999999999999999999999999999999999999999 99999999999999998655
No 205
>PRK00624 glycine cleavage system protein H; Provisional
Probab=96.90 E-value=0.0014 Score=69.53 Aligned_cols=68 Identities=24% Similarity=0.269 Sum_probs=49.8
Q ss_pred eCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe---e-CCCCccCC---CC-EEEEEecCCC
Q 000086 692 AETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK---M-AEGQAMQA---GE-LIARLDLDDP 759 (2304)
Q Consensus 692 APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i---~-~~G~~v~~---G~-~La~l~~~~~ 759 (2304)
.-+-|.|+.+.. ++|++|++||++++||+||+..+|.||.+|+|..+ + ..-+.++. |+ =|++|+++++
T Consensus 28 ~~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~~~ 104 (114)
T PRK00624 28 QENLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQLDED 104 (114)
T ss_pred HHhcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECCh
Confidence 345677777765 55999999999999999999999999999999877 2 11222222 22 4666666554
No 206
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=96.90 E-value=0.0019 Score=82.77 Aligned_cols=33 Identities=0% Similarity=0.147 Sum_probs=30.7
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
..|.++.+|+|.++.|++||.|++||+|++|+.
T Consensus 62 v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 62 VQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred EEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 458899999999999999999999999999974
No 207
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=96.80 E-value=0.0014 Score=70.98 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=42.2
Q ss_pred eeCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 691 VAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 691 ~APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
.....|.|+.+.. ++|++|++||+++.||+||+..+|.||.+|+|..+
T Consensus 31 a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~v 79 (127)
T TIGR00527 31 AQDELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEV 79 (127)
T ss_pred HhhCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEe
Confidence 4567788877744 57999999999999999999999999999999877
No 208
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=96.67 E-value=0.0033 Score=80.43 Aligned_cols=73 Identities=11% Similarity=0.201 Sum_probs=62.2
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEcccc--------------------------------------------
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM-------------------------------------------- 723 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm-------------------------------------------- 723 (2304)
..|.++++|+|.++.|++||+|++||+|+.|+.--.
T Consensus 64 ~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~ 143 (385)
T PRK09578 64 AEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTE 143 (385)
T ss_pred EEEeccCcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 469999999999999999999999999999976210
Q ss_pred ---------------------------ceeeecCCCcEEEEe-eCCCCccCCC--CEEEEEecCCCC
Q 000086 724 ---------------------------CMPLLSPASGVLQFK-MAEGQAMQAG--ELIARLDLDDPS 760 (2304)
Q Consensus 724 ---------------------------~~~l~ap~~G~V~~i-~~~G~~v~~G--~~La~l~~~~~~ 760 (2304)
...|+||++|+|... +.+|+.|.+| ++|+.|...++-
T Consensus 144 ~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~~~l 210 (385)
T PRK09578 144 AVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQLDPI 210 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEecCce
Confidence 247999999999887 9999999996 589888766553
No 209
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=96.67 E-value=0.02 Score=64.46 Aligned_cols=90 Identities=19% Similarity=0.102 Sum_probs=67.4
Q ss_pred CccCH---HHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchh
Q 000086 1979 QVWFP---DSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2055 (2304)
Q Consensus 1979 g~~~p---~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa 2055 (2304)
|.+.. .++....+.++.+... -|+++..|+|| |....+-.+++.+..++.|+++++. +-.+.||+
T Consensus 7 g~I~~~~~~~~~~~~~~l~~~~~~-~~i~l~inspG----------G~~~~~~~i~~~i~~~~~pvi~~v~-g~a~s~g~ 74 (160)
T cd07016 7 GDIGSDWGVTAKEFKDALDALGDD-SDITVRINSPG----------GDVFAGLAIYNALKRHKGKVTVKID-GLAASAAS 74 (160)
T ss_pred eEeCCCcccCHHHHHHHHHhccCC-CCEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEc-chHHhHHH
Confidence 34444 4677777788877665 89999999999 3345667889999999999999998 23344455
Q ss_pred hhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2056 WVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2056 ~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
++++.. |. .++.|++++++-.|.+.
T Consensus 75 ~ia~a~----d~--~~~~~~a~~~~~~~~~~ 99 (160)
T cd07016 75 VIAMAG----DE--VEMPPNAMLMIHNPSTG 99 (160)
T ss_pred HHHhcC----Ce--EEECCCcEEEEECCccc
Confidence 666654 55 89999999999888654
No 210
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=96.65 E-value=0.0035 Score=80.53 Aligned_cols=72 Identities=22% Similarity=0.366 Sum_probs=60.9
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEccc---------------------------------------------
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK--------------------------------------------- 722 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMK--------------------------------------------- 722 (2304)
..|.++.+|+|.++.|++||+|++||+|+.|+.-.
T Consensus 66 ~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~ 145 (397)
T PRK15030 66 AEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQ 145 (397)
T ss_pred EEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 46999999999999999999999999999997411
Q ss_pred --------------------------cceeeecCCCcEEEEe-eCCCCccCCCCE--EEEEecCCC
Q 000086 723 --------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGEL--IARLDLDDP 759 (2304)
Q Consensus 723 --------------------------m~~~l~ap~~G~V~~i-~~~G~~v~~G~~--La~l~~~~~ 759 (2304)
=...|+||++|+|... +++|+.|.+|+. |++|...++
T Consensus 146 a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 211 (397)
T PRK15030 146 ALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDP 211 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEecCc
Confidence 0246999999999888 999999999985 677765554
No 211
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=96.62 E-value=0.029 Score=65.43 Aligned_cols=100 Identities=16% Similarity=0.223 Sum_probs=73.4
Q ss_pred ccccccCCCccCHHHHHHHHHHHHHhhc-c-CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1971 ERVVPQAGQVWFPDSATKTAQALMDFNR-E-ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1971 ~~~~~~~gg~~~p~sa~K~a~~i~~~~~-~-~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
.+++.. +|.+.+..+.-..+.+...+. . .-||.+..|+|| |-+-.|-.|.+++...+.|+.+++.
T Consensus 23 ~r~I~i-~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG----------G~v~ag~aI~d~i~~~~~~V~t~v~-- 89 (197)
T PRK14512 23 SRSIVI-AGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEG----------GDIDAGFAIFNMIRFVKPKVFTIGV-- 89 (197)
T ss_pred CcEEEE-CCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC----------CCHHHHHHHHHHHHhCCCCEEEEEE--
Confidence 334444 567888877776666655554 2 489999999999 3455778899999999999999998
Q ss_pred CcCCc-hhhhhcccccCCccceeecccCcEEEeeCccchh
Q 000086 2049 AELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMI 2087 (2304)
Q Consensus 2049 ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v 2087 (2304)
|-+.+ |+.+++.... . ..|+.|+|++-+..|.+.+
T Consensus 90 G~AaSaaslIl~ag~~--~--~R~~~p~s~imiHqP~~~~ 125 (197)
T PRK14512 90 GLVASAAALIFLAAKK--E--SRFSLPNARYLLHQPLSGF 125 (197)
T ss_pred eeeHhHHHHHHhcCCc--C--ceeECCCCcEEEEcCcccc
Confidence 55555 6666666532 2 2788999999999997653
No 212
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=96.62 E-value=0.036 Score=64.85 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=71.4
Q ss_pred CCCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-
Q 000086 1977 AGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2053 (2304)
Q Consensus 1977 ~gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G- 2053 (2304)
.+|.+.+..+....+-+...+.. .-|+.++.|++| |-...|-.|.+++...+.|+.+++. |.+.|
T Consensus 36 i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG----------G~v~~g~~I~d~i~~~~~~v~t~~~--G~aaS~ 103 (200)
T PRK00277 36 LGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG----------GSVTAGLAIYDTMQFIKPDVSTICI--GQAASM 103 (200)
T ss_pred ECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC----------CcHHHHHHHHHHHHhcCCCEEEEEE--eEeccH
Confidence 36788888888877766666553 568999999999 3445677889999999999999998 55555
Q ss_pred hhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+++++... .+. .++.|+|++++-.|.+.
T Consensus 104 a~~I~~ag~--~~~--r~~~p~s~imih~p~~~ 132 (200)
T PRK00277 104 GAFLLAAGA--KGK--RFALPNSRIMIHQPLGG 132 (200)
T ss_pred HHHHHhcCC--CCC--EEEcCCceEEeccCccc
Confidence 666666532 233 68899999999988753
No 213
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=96.62 E-value=0.023 Score=63.87 Aligned_cols=91 Identities=19% Similarity=0.248 Sum_probs=66.6
Q ss_pred CCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-G 2054 (2304)
.|.+++.+.....+.++.+... --+|++-.|++|.. ...+..+.+++..++.|+++++. |.+.| |
T Consensus 5 ~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~----------~~~~~~i~~~l~~~~kpvva~~~--g~~~s~g 72 (161)
T cd00394 5 NGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGR----------VDAGMNIVDALQASRKPVIAYVG--GQAASAG 72 (161)
T ss_pred EeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcC----------HHHHHHHHHHHHHhCCCEEEEEC--ChhHHHH
Confidence 4677788888888888888764 35677778988732 23455677888888999999998 44445 4
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
.|+++. .|. +|+.|++.+++.+|...
T Consensus 73 ~~la~~----~d~--~~~~~~a~~~~~g~~~~ 98 (161)
T cd00394 73 YYIATA----ANK--IVMAPGTRVGSHGPIGG 98 (161)
T ss_pred HHHHhC----CCE--EEECCCCEEEEeeeEEe
Confidence 444444 355 89999999999999753
No 214
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.029 Score=71.12 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=78.1
Q ss_pred CCccCHHHHHHHHHHHHHhhccC-CCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCC--cCCch
Q 000086 1978 GQVWFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMA--ELRGG 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~g--e~~GG 2054 (2304)
.|.++|.++.-..|.++.+.+++ -.+|...|||| |.+...-+|++++.++.+|++.|+.|.| .+-.|
T Consensus 34 ~g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPG----------Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAG 103 (436)
T COG1030 34 DGAIDPASADYLQRALQSAEEENAAAVVLELDTPG----------GLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAG 103 (436)
T ss_pred cCccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCC----------chHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchh
Confidence 57999999999999999999998 88999999999 5666677899999999999999999865 45569
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCcc
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
+|+++.+ |. .+|-|...+|...|=
T Consensus 104 tyI~m~~----hi--aaMAPgT~iGaa~Pi 127 (436)
T COG1030 104 TYILMAT----HI--AAMAPGTNIGAATPI 127 (436)
T ss_pred hHHHHhc----Ch--hhhCCCCccccccee
Confidence 9999986 55 788899888877773
No 215
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=96.43 E-value=0.038 Score=64.40 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=72.7
Q ss_pred cCCCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc
Q 000086 1976 QAGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2053 (2304)
Q Consensus 1976 ~~gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G 2053 (2304)
..||.+.+.++..+...+...+.+ .-|+.+..|++| |-+-.|-.|.+++...+.|+.+++. |-+.+
T Consensus 29 fl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG----------G~v~~g~aIyd~m~~~~~~V~t~~~--G~AaS 96 (196)
T PRK12551 29 FLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG----------GSVYDGLGIFDTMQHVKPDVHTVCV--GLAAS 96 (196)
T ss_pred EECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC----------cchhhHHHHHHHHHhcCCCEEEEEE--EEehh
Confidence 457889999988887777766654 489999999999 3344677899999999999999998 66666
Q ss_pred -hhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2054 -GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2054 -Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+.+.++... ...+|.|+|++.+-.|.+.
T Consensus 97 ~AslIl~aG~~----~~R~~~p~a~iMIHqP~~~ 126 (196)
T PRK12551 97 MGAFLLCAGAK----GKRSSLQHSRIMIHQPLGG 126 (196)
T ss_pred HHHHHHhCCCC----CceecCCCCEEEEecCCcc
Confidence 4444454322 2278899999999999654
No 216
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=96.40 E-value=0.0057 Score=79.05 Aligned_cols=73 Identities=18% Similarity=0.317 Sum_probs=60.7
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccc--------------------------------------------
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK-------------------------------------------- 722 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMK-------------------------------------------- 722 (2304)
...|.++++|+|.++.|++||+|++||+|++|..-.
T Consensus 87 ~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld 166 (415)
T PRK11556 87 TVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELD 166 (415)
T ss_pred EEEEEccccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHH
Confidence 457999999999999999999999999999995410
Q ss_pred ---------------------------cceeeecCCCcEEEEe-eCCCCccCCCC--EEEEEecCCC
Q 000086 723 ---------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGE--LIARLDLDDP 759 (2304)
Q Consensus 723 ---------------------------m~~~l~ap~~G~V~~i-~~~G~~v~~G~--~La~l~~~~~ 759 (2304)
-...|+||++|+|... +.+|+.|.+|+ .|++|...++
T Consensus 167 ~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 233 (415)
T PRK11556 167 AQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQTHP 233 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEecCCc
Confidence 0347999999999888 99999999985 5776654443
No 217
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=96.40 E-value=0.0062 Score=77.48 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=31.3
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
..|.||++|.|.++.|++||+|++||+|+.|+.
T Consensus 62 ~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 62 VDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 468999999999999999999999999999986
No 218
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=96.38 E-value=0.0057 Score=78.28 Aligned_cols=72 Identities=14% Similarity=0.260 Sum_probs=60.7
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc---------c------------------------------------
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM---------K------------------------------------ 722 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM---------K------------------------------------ 722 (2304)
..|.++.+|+|.++.|++||+|++||+|++|+.- |
T Consensus 62 ~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~ 141 (385)
T PRK09859 62 AEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDT 141 (385)
T ss_pred EEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH
Confidence 4599999999999999999999999999999831 0
Q ss_pred --------------------------cceeeecCCCcEEEEe-eCCCCccCCCC--EEEEEecCCC
Q 000086 723 --------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGE--LIARLDLDDP 759 (2304)
Q Consensus 723 --------------------------m~~~l~ap~~G~V~~i-~~~G~~v~~G~--~La~l~~~~~ 759 (2304)
=...|+||++|+|... +.+|+.|.+|+ +|++|...++
T Consensus 142 a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 207 (385)
T PRK09859 142 ARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDP 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEecCC
Confidence 1257999999999887 99999999995 6887765544
No 219
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=96.34 E-value=0.032 Score=65.59 Aligned_cols=91 Identities=18% Similarity=0.208 Sum_probs=71.8
Q ss_pred CCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-G 2054 (2304)
+|.+++..+......+..++.. .-|+.+..|++| |-+-.|-.|.+++...+.|+.+++. |.+.+ |
T Consensus 41 ~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG----------G~v~~g~~I~d~i~~~~~~v~t~~~--G~aaSaa 108 (207)
T PRK12553 41 GGQVDDASANDVMAQLLVLESIDPDRDITLYINSPG----------GSVTAGDAIYDTIQFIRPDVQTVCT--GQAASAG 108 (207)
T ss_pred cceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC----------CcHHHHHHHHHHHHhcCCCcEEEEE--eehhhHH
Confidence 5788889999888888877765 579999999999 4455678899999999999999998 55555 5
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCcc
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
++++++... +. .|+.|+|++.+-.|.
T Consensus 109 ~lI~~ag~~--~~--R~~~p~s~imiH~p~ 134 (207)
T PRK12553 109 AVLLAAGTP--GK--RFALPNARILIHQPS 134 (207)
T ss_pred HHHHHcCCc--Cc--EEECCCchhhhcCcc
Confidence 555665432 22 688999999999996
No 220
>PRK12784 hypothetical protein; Provisional
Probab=96.32 E-value=0.011 Score=57.31 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=64.0
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEcccccee-eecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMP-LLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~-l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
.|.||.-|+|-+++|.+++.|-.=++|+.|+.|.-+++ |..-.+|-|+.+ +.+||.+.++.+|+.++.|
T Consensus 7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred hhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 47899999999999999999999999999999988877 566799999999 9999999999999999865
No 221
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=96.30 E-value=0.047 Score=64.62 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=68.1
Q ss_pred CCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-G 2054 (2304)
||.++...+......+-..+. .+-||.+..|++| |-.-.|-.|.+++...+.|+.+++. |-+.+ |
T Consensus 60 ~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpG----------Gsv~aGlaIyd~m~~~~~~V~tv~~--G~AAS~A 127 (221)
T PRK14514 60 GTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPG----------GSVYAGLGIYDTMQFISSDVATICT--GMAASMA 127 (221)
T ss_pred CCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCC----------cchhhHHHHHHHHHhcCCCEEEEEE--EEehhHH
Confidence 677777777666654433333 3589999999999 3345677899999999999999998 66666 5
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
+.+.++...+ . .+|.|+|++.+-.|.+.
T Consensus 128 slIl~aG~~g--k--R~~~pna~iMiHqP~~~ 155 (221)
T PRK14514 128 SVLLVAGTKG--K--RSALPHSRVMIHQPLGG 155 (221)
T ss_pred HHHHhcCCCC--c--eeeCCCCEEEeccCCcc
Confidence 5555554322 2 68889999999999764
No 222
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=96.26 E-value=1.1 Score=63.06 Aligned_cols=108 Identities=18% Similarity=0.274 Sum_probs=81.6
Q ss_pred EEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeec-ccceEEEEeCceeccc--cCCCCCeeeeCCCceeEEEEccC
Q 000086 629 YTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEE-AAGTRLLIDGRTCLLQ--NDHDPSKLVAETPCKLLRYLVSD 705 (2304)
Q Consensus 629 y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee-~~~~~v~v~g~t~~~~--~~~dp~~l~APmPGkvv~~~V~~ 705 (2304)
+.+..+|..|...|.+.+.+.+.+.+||...++-+..= .+++.++.+|+.+.+- .+.+.
T Consensus 606 vdli~e~~kY~lkV~rss~~~y~l~mngs~~~v~v~~L~dggLli~~~Gks~t~y~keev~~------------------ 667 (2196)
T KOG0368|consen 606 VDLIYEGNKYTLKVVRSSSGTYVLRMNGSEVTVGVHQLSDGGLLISLDGKSYTIYWKEEVDG------------------ 667 (2196)
T ss_pred eEEEecCcEEEEEEEecCCceEEEEEcCcEEEEEEEEecCCcEEEEECCceEEEEEeeccce------------------
Confidence 44667999999999999999999999999888877553 4567788888866542 33332
Q ss_pred CCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 706 GSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 706 Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
-.+.-|---+.+|..-=-..+++|.+|++.+. |+.|+-|.+|++-|++|
T Consensus 668 -~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiE 717 (2196)
T KOG0368|consen 668 -YRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIE 717 (2196)
T ss_pred -EEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehe
Confidence 23344444555565444456999999999655 99999999999999987
No 223
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=96.22 E-value=0.085 Score=61.37 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=69.4
Q ss_pred cCCCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc
Q 000086 1976 QAGQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2053 (2304)
Q Consensus 1976 ~~gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G 2053 (2304)
..+|.+.+..+.....-+...+. ..-|+.+..|++| |-...|-.|.+.+...+.|+.+++. |.+.+
T Consensus 30 ~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpG----------G~v~~g~~I~d~l~~~~~~v~t~~~--G~AaS 97 (191)
T TIGR00493 30 FLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPG----------GSITAGLAIYDTMQFIKPDVSTICI--GQAAS 97 (191)
T ss_pred EEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEE--Eeecc
Confidence 45778888777666555444443 3579999999999 3455778899999999999999998 66655
Q ss_pred -hhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2054 -GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2054 -Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|++++++... +. .++.|+|++.+-.|.+.
T Consensus 98 aaslI~~aG~~--~~--r~~~p~s~imiH~p~~~ 127 (191)
T TIGR00493 98 MGAFLLSAGAK--GK--RFSLPNSRIMIHQPLGG 127 (191)
T ss_pred HHHHHHhcCCC--Cc--EEecCCceEEEecCccc
Confidence 5666665422 22 68889999999999753
No 224
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=96.17 E-value=0.02 Score=59.58 Aligned_cols=98 Identities=17% Similarity=0.274 Sum_probs=58.6
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~ 129 (2304)
||||+|+|.---.+..++++-- .+..+ .+.|. |.-..+.+ +.+.+ +..|.+.|+++|++
T Consensus 2 kVLviGsGgREHAia~~l~~s~--------~v~~v-~~aPG----N~G~~~~~-~~~~~-------~~~d~~~l~~~a~~ 60 (100)
T PF02844_consen 2 KVLVIGSGGREHAIAWKLSQSP--------SVEEV-YVAPG----NPGTAELG-KNVPI-------DITDPEELADFAKE 60 (100)
T ss_dssp EEEEEESSHHHHHHHHHHTTCT--------TEEEE-EEEE------TTGGGTS-EEE-S--------TT-HHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHhcCC--------CCCEE-EEeCC----CHHHHhhc-eecCC-------CCCCHHHHHHHHHH
Confidence 8999999876666666665431 11112 13332 33333333 33433 34678999999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHH
Q 000086 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAA 169 (2304)
Q Consensus 130 ~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~ 169 (2304)
.++|.|++|-+..-. .-+.+.|.+.||..+||+.++.++
T Consensus 61 ~~idlvvvGPE~pL~-~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 61 NKIDLVVVGPEAPLV-AGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp TTESEEEESSHHHHH-TTHHHHHHHTT-CEES--HHHHHH
T ss_pred cCCCEEEECChHHHH-HHHHHHHHHCCCcEECcCHHHHhc
Confidence 999999999221111 124599999999999999998764
No 225
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=96.14 E-value=0.099 Score=61.23 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=69.3
Q ss_pred cCCCccCHHHHHHHH-HHHHHhhc-cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc
Q 000086 1976 QAGQVWFPDSATKTA-QALMDFNR-EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2053 (2304)
Q Consensus 1976 ~~gg~~~p~sa~K~a-~~i~~~~~-~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G 2053 (2304)
..||.+.+..+.... +.+.+... -.-|+.+..|++| |-.-.|-.|.+++...+.|+.+++. |-+.+
T Consensus 34 fl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG----------G~v~~g~aIyd~m~~~~~~V~Tv~~--G~AaS 101 (200)
T CHL00028 34 FLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG----------GSVISGLAIYDTMQFVKPDVHTICL--GLAAS 101 (200)
T ss_pred EECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC----------cchhhHHHHHHHHHhcCCCEEEEEE--EehHH
Confidence 346777777776655 55554433 4689999999999 3344677899999999999999999 66666
Q ss_pred -hhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2054 -GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2054 -Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+.+.++...+ . .++.|+|++.+-.|.+.
T Consensus 102 ~aslIl~aG~kg--~--R~~~p~s~imiHqp~~~ 131 (200)
T CHL00028 102 MASFILAGGEIT--K--RLAFPHARVMIHQPASS 131 (200)
T ss_pred HHHHHHhCCCCC--C--EEecCCCeEEEecCccC
Confidence 45555554322 2 58889999999999764
No 226
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=96.07 E-value=0.085 Score=60.46 Aligned_cols=127 Identities=15% Similarity=0.217 Sum_probs=78.9
Q ss_pred hhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccc-cc
Q 000086 226 CQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRD-CS 304 (2304)
Q Consensus 226 a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~Rd-cS 304 (2304)
.....||+|||--.+.+|.|-.+|+|..++.+...-+... .+-+.+|.|++....+.+|-+++.+ .+. -|. .|
T Consensus 46 ~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi~sll~~~--~~Y~T~EPfId~kyDirvqkIG~~y---kA~-~R~sis 119 (203)
T PF02750_consen 46 LSAPRFPVVVKVGHAHAGMGKVKVDNQQDFQDIASLLAIT--KDYATTEPFIDAKYDIRVQKIGNNY---KAY-MRTSIS 119 (203)
T ss_dssp CS-SSSSEEEEESS-STTTTEEEE-SHHHHHHHHHHHHHH--TS-EEEEE---EEEEEEEEEETTEE---EEE-EEEESS
T ss_pred ccCCCCCEEEEEccccCceeEEEEccHHHHHHHHHHHHhc--CceEEeeccccceeEEEEEEEcCeE---EEE-EEcccc
Confidence 3446799999999999999999999999888765554422 4578999999877788888887643 332 221 00
Q ss_pred ccc---ccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEecc
Q 000086 305 VQR---RHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2304)
Q Consensus 305 vqr---r~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2304)
-.. -.--..|.-|. .++....+.++.+.+|---.+.||.+.. ++|+-|++|+|-
T Consensus 120 ~nWK~N~gsa~lEqi~~-------~~ryk~Wvd~~s~lfGGlDI~~v~ai~~-kdGke~Iievnd 176 (203)
T PF02750_consen 120 GNWKANTGSAMLEQIAM-------TERYKLWVDECSELFGGLDICAVDAIHG-KDGKEYIIEVND 176 (203)
T ss_dssp STSSTTSSSEEEEEE----------HHHHHHHHHHGGGGG--SEEEEEEEEE-TTS-EEEEEEE-
T ss_pred ccccccccchheeecCC-------ChHHHHHHHHHHHHcCCccEEEEEEEEc-CCCCEEEEEecC
Confidence 000 01112333332 2455667777788887777889999998 589999999995
No 227
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=95.90 E-value=0.037 Score=73.97 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=74.4
Q ss_pred eeeEeecCeEEEEEEEeeCC-----CeEEEeeCCeEEEEEEEEec---------------CCceEEEeCCeeEEEEeeec
Q 000086 607 QVSLNIEGSKYRIDMVRRGP-----GSYTLRMNESEIEAEIHTLR---------------DGGLLMQLDGNSHVVYAEEE 666 (2304)
Q Consensus 607 ~vel~~~g~~y~v~v~~~~~-----~~y~l~ing~~~~V~v~~l~---------------dg~l~v~~~G~s~~v~~~ee 666 (2304)
.+++..+|+.|.|++...++ ....+.+||+..++.+...+ .+.+...+.|....+.+++
T Consensus 465 e~~v~~~Gk~~~Ikl~~~g~~~~G~r~v~fevng~~r~v~v~d~~~~~~~~~~~~a~~~~~~~v~apm~G~V~~~~V~~- 543 (596)
T PRK14042 465 EFDIILHGESYHVKVAGYGMIEHGQQSCFLWVDGVPEEVVVQHSELHDKIERSSVNNKIGPGDITVAIPGSIIAIHVSA- 543 (596)
T ss_pred EEEEEECCEEEEEEEeccccccCCceEEEEEEcCccceeecccccccccccccccCCCCCCCeEecCcceEEEEEEeCC-
Confidence 35556899999999976543 45677899988777554211 2234444455544444432
Q ss_pred ccceEEEEeCceeccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 667 AAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 667 ~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
+-.+..+..-+.++...-.+.|.||..|+|.+++|++||.|..||+|++||+
T Consensus 544 --Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 544 --GDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred --CCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 2223333333344444446789999999999999999999999999999984
No 228
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=95.84 E-value=0.041 Score=63.22 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=93.9
Q ss_pred CCccCHHHHHHHHHHHHHh-hc-cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDF-NR-EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~-~~-~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-G 2054 (2304)
+|.+++..+......+... +. ..-|+.++.|++| |-+..|-.+.+++..++.|+.+++. |.+.+ |
T Consensus 22 ~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG----------G~v~~g~~i~~~i~~~~~~v~t~~~--G~aaSaa 89 (182)
T PF00574_consen 22 NGPIDEESANRLISQLLYLENEDKNKPINIYINSPG----------GDVDAGLAIYDAIRSSKAPVTTVVL--GLAASAA 89 (182)
T ss_dssp ESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE----------BCHHHHHHHHHHHHHSSSEEEEEEE--EEEETHH
T ss_pred CCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC----------CccHHHHHHHHHHHhcCCCeEEEEe--Cccccce
Confidence 5788888888876655444 33 5679999999999 4466788999999999999999999 55544 4
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIK 2134 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 2134 (2304)
+.+.+... ..+-|+.|+|++.+-.|.....- ...++...+..++..-..+.+.+.+. ...+++ ++.
T Consensus 90 ~~i~~ag~----~~~R~~~~~s~~m~H~p~~~~~g--~~~~l~~~~~~l~~~~~~~~~~~~~~-tg~~~~-------~i~ 155 (182)
T PF00574_consen 90 TLIFLAGD----KGKRYASPNSRFMIHQPSTGSGG--NASELREQAKELEKLNERIANIYAER-TGLSKE-------EIE 155 (182)
T ss_dssp HHHHHTSS----TTTEEE-TT-EEEES-CEEEEEE--EHHHHHHHHHHHHHHHHHHHHHHHHH-HTS-HH-------HHH
T ss_pred ehhhhcCC----cCceeeeecCEEEeecceeeccc--ccchhHHHHHHHHHHHHHHHHHHHHH-hCCcHH-------HHH
Confidence 55555542 21137889999999999755433 23333333332222111111212111 011111 111
Q ss_pred HHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCc
Q 000086 2135 AREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2173 (2304)
Q Consensus 2135 ~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~ 2173 (2304)
+ .-..|.+-+|..+++.|+||.|+..
T Consensus 156 ~-------------~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 156 E-------------LMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp H-------------HCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred H-------------HHhCCccccHHHHHHcCCCCEeccC
Confidence 1 0113455689999999999999875
No 229
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=95.74 E-value=0.15 Score=57.77 Aligned_cols=93 Identities=19% Similarity=0.164 Sum_probs=69.0
Q ss_pred CCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-G 2054 (2304)
.|.+++..+....+.+..++.. .-|+++..|+|| |-.-.+-.|.+++...+.|+.+++. |.+.+ |
T Consensus 6 ~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpG----------G~v~~~~~i~~~i~~~~~~v~~~~~--g~aaS~~ 73 (162)
T cd07013 6 TGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPG----------GDVFAGMAIYDTIKFIKADVVTIID--GLAASMG 73 (162)
T ss_pred ccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCC----------CcHHHHHHHHHHHHhcCCCceEEEE--eehhhHH
Confidence 4567778888887777777664 379999999999 3345667889999999999999998 55555 6
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
+|+++....+ . .++-|++++++-.|-+.
T Consensus 74 ~~i~~a~~~g--~--r~~~p~a~~~ih~~~~~ 101 (162)
T cd07013 74 SVIAMAGAKG--K--RFILPNAMMMIHQPWGG 101 (162)
T ss_pred HHHHHcCCCC--c--EEEecCEEEEEccCccc
Confidence 6666654322 2 56778999998877653
No 230
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=95.67 E-value=0.0099 Score=73.73 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=24.8
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
+...|.+|.+|+| +++|++||+|++||+|+.++.
T Consensus 20 ~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 20 NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 3467999999999 999999999999999999984
No 231
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=95.67 E-value=0.088 Score=60.13 Aligned_cols=94 Identities=21% Similarity=0.276 Sum_probs=70.1
Q ss_pred CCCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-
Q 000086 1977 AGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2053 (2304)
Q Consensus 1977 ~gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G- 2053 (2304)
.+|.+.+..+......+..++.. .-|+.+..|+|| |-.-.|-.+.+.+...+.|+.+++. |.+.+
T Consensus 14 i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpG----------G~v~~~~~i~~~l~~~~~~v~t~~~--g~aaS~ 81 (171)
T cd07017 14 LGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPG----------GSVTAGLAIYDTMQYIKPPVSTICL--GLAASM 81 (171)
T ss_pred EcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEE--eEehhH
Confidence 36788888888877777776654 369999999999 3344667788889889999999998 55555
Q ss_pred hhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+++.+....+ . .|+.|+|++.+-.|.+.
T Consensus 82 ~~~i~~~g~~~--~--r~~~~~a~~~~h~~~~~ 110 (171)
T cd07017 82 GALLLAAGTKG--K--RYALPNSRIMIHQPLGG 110 (171)
T ss_pred HHHHHHcCCCC--C--EEEccchHHHHcCCCcc
Confidence 55555554322 2 68889999999888653
No 232
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=95.57 E-value=0.23 Score=58.16 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=69.8
Q ss_pred CCCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-
Q 000086 1977 AGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2053 (2304)
Q Consensus 1977 ~gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G- 2053 (2304)
.||.+.++.|.-+..-+-..+.. .-|+-+..|++| |-.-.|-.|.+++...+.|+.+++. |-+.+
T Consensus 32 l~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG----------G~v~~GlaIyd~m~~~~~~V~Ti~~--G~AaS~ 99 (201)
T PRK14513 32 VGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG----------GEVYAGLAIYDTMRYIKAPVSTICV--GIAMSM 99 (201)
T ss_pred ECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC----------CchhhHHHHHHHHHhcCCCEEEEEE--eeehhh
Confidence 37888888888876555555553 579999999999 3345678899999999999999999 66666
Q ss_pred hhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+.+.++..-+ . .+|.|+|++-+-.|.+.
T Consensus 100 As~il~aG~kg--k--R~~~pna~iMIHqp~~~ 128 (201)
T PRK14513 100 GSVLLMAGDKG--K--RMALPNSRIMIHQGSAG 128 (201)
T ss_pred HHHHHhcCCCC--c--EEecCCeEEEEecCCCC
Confidence 45554544211 2 57789999999888754
No 233
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=95.52 E-value=0.27 Score=58.54 Aligned_cols=90 Identities=12% Similarity=0.100 Sum_probs=64.0
Q ss_pred ccCHHHHHHHHHHHHHhhcc-CCCE-EEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhh
Q 000086 1980 VWFPDSATKTAQALMDFNRE-ELPL-FILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWV 2057 (2304)
Q Consensus 1980 ~~~p~sa~K~a~~i~~~~~~-~lPL-v~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~v 2057 (2304)
...+.+.....+.++.+.+. ++-. |+-.|++|+++...++. ...+..++....|+++++- +.+.||-|+
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el-------~~~i~~~~~~~kpVia~~~--~~~sggy~l 95 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEEL-------RQALERFRASGKPVIAYAD--GYSQGQYYL 95 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHH-------HHHHHHHHHhCCeEEEEeC--CCCchhhhh
Confidence 34467788888999988764 5664 45569999855544332 4556667777899999988 555556666
Q ss_pred hcccccCCccceeecccCcEEEeeCcc
Q 000086 2058 VVDSRINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2058 v~~~~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
++.+ |. +||.|++.+|..|.-
T Consensus 96 asaa----d~--I~a~p~~~vg~iGv~ 116 (222)
T cd07018 96 ASAA----DE--IYLNPSGSVELTGLS 116 (222)
T ss_pred hhhC----CE--EEECCCceEEeeccc
Confidence 6653 65 899999999998763
No 234
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=95.50 E-value=0.031 Score=64.72 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=35.5
Q ss_pred ceEEEEEc---CcccchhhhhhcccCEEEEecCcceEecChH
Q 000086 1780 TFTLTYVT---GRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1818 (2304)
Q Consensus 1780 iptis~vt---g~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~ 1818 (2304)
.|+|+.+. |.++|+|++++..||++++.+++.+++.++.
T Consensus 59 kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~ 100 (187)
T cd07020 59 VPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPV 100 (187)
T ss_pred CCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEecccc
Confidence 59999999 9999999999999999999999998875553
No 235
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=95.42 E-value=0.015 Score=53.02 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=31.0
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 725 ~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
..|.+|.+|+|..+ +++|+.|++||+|++|+..+
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 47899999999999 99999999999999997654
No 236
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=95.33 E-value=0.034 Score=69.57 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=30.8
Q ss_pred CeeeeCCC---ceeEEEEccCCCEEccCCcEEEEEc
Q 000086 688 SKLVAETP---CKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 688 ~~l~APmP---Gkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
..|.+|.+ |+|.+++|++||+|++||+|+.|+.
T Consensus 14 ~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~ 49 (327)
T TIGR02971 14 VAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDS 49 (327)
T ss_pred EEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecC
Confidence 35889999 9999999999999999999999985
No 237
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.33 E-value=0.039 Score=71.06 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=31.5
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
....|.||.+|.|.+++|++||.|++||+|+.++.
T Consensus 42 ~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~ 76 (423)
T TIGR01843 42 NVKVVQHLEGGIVREILVREGDRVKAGQVLVELDA 76 (423)
T ss_pred CeeecccCCCcEEEEEEeCCCCEecCCCeEEEEcc
Confidence 35568999999999999999999999999999953
No 238
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=95.32 E-value=0.18 Score=57.77 Aligned_cols=88 Identities=16% Similarity=0.090 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhhc-cCCCE-EEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcc
Q 000086 1983 PDSATKTAQALMDFNR-EELPL-FILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVD 2060 (2304)
Q Consensus 1983 p~sa~K~a~~i~~~~~-~~lPL-v~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~ 2060 (2304)
..+.....++++.+.+ .++-. |+-.|++|.... . .+....++.++..++.|+++++- |....||.|+++.
T Consensus 21 ~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~---~----~~~~~~~i~~~~~~~kpVia~v~-G~a~g~g~~la~a 92 (177)
T cd07014 21 NVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVT---A----SEVIRAELAAARAAGKPVVASGG-GNAASGGYWISTP 92 (177)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHH---H----HHHHHHHHHHHHhCCCCEEEEEC-CchhHHHHHHHHh
Confidence 3467788888888766 45654 444566653221 1 12334567788889999999998 3444445555555
Q ss_pred cccCCccceeecccCcEEEeeCcc
Q 000086 2061 SRINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2061 ~~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
+|. +||.|+++++..+.-
T Consensus 93 ----~D~--i~a~~~a~~~~~G~~ 110 (177)
T cd07014 93 ----ANY--IVANPSTLVGSIGIF 110 (177)
T ss_pred ----CCE--EEECCCCeEEEechH
Confidence 466 899999999998763
No 239
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.29 E-value=0.035 Score=53.96 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=31.7
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
-...+.||..|+|.++++++||.|+.||+|++||
T Consensus 37 ~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 37 MEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 3567999999999999999999999999999997
No 240
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=95.08 E-value=0.33 Score=57.51 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=57.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEE-ecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCC-cCCchh
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFIL-ANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMA-ELRGGA 2055 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l-~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~g-e~~GGa 2055 (2304)
..+++.......++++.+.. .++-.|+| .|++|.+.... . .....+..+.. +.|+++++- | .+.||.
T Consensus 20 ~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~---~----~l~~~l~~~~~-~KpViA~v~--g~a~s~gy 89 (214)
T cd07022 20 ASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGV---F----ELADAIRAARA-GKPIVAFVN--GLAASAAY 89 (214)
T ss_pred CCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHH---H----HHHHHHHHHhc-CCCEEEEEC--CchhhHHH
Confidence 34567788888999998865 46666555 67776322111 1 12223333444 599999998 4 344566
Q ss_pred hhhcccccCCccceeecccCcEEEeeCc
Q 000086 2056 WVVVDSRINSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2056 ~vv~~~~i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
|+++. +|. +||.|+|.+|..|.
T Consensus 90 ~lA~~----aD~--i~a~~~a~~g~iG~ 111 (214)
T cd07022 90 WIASA----ADR--IVVTPTAGVGSIGV 111 (214)
T ss_pred HHHhc----CCE--EEEcCCCeEEeeeE
Confidence 66655 466 89999999887754
No 241
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=95.06 E-value=0.1 Score=64.41 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=25.3
Q ss_pred cEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccc
Q 000086 232 PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQS 280 (2304)
Q Consensus 232 PVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~ 280 (2304)
-.|+||..|+.|+||+++++.+++.+. ......+++||+||+.+
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~-----~~~~~~~~vvQkYI~~P 110 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF-----SKNKNQPYVVQKYIENP 110 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC-----HCCTTS-EEEEE--SSB
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH-----hhhhhhhhhhhhccCCC
Confidence 489999999999999999999988854 12335789999999863
No 242
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=94.76 E-value=0.4 Score=56.54 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=58.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cC-CCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCC--CCEEEEEcCCCcCCch
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK--QPVFVYIPMMAELRGG 2054 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~--vP~i~~I~~~ge~~GG 2054 (2304)
|++. .+.....+.++.+.. .+ ..||+-.|++|.+. ..+..+.+++..++ .|+++++. +..+.||
T Consensus 9 g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~----------~~~~~l~~~i~~~~~~kpvia~v~-g~a~s~g 76 (207)
T TIGR00706 9 GAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTV----------VASEEIYEKLKKLKAKKPVVASMG-GVAASGG 76 (207)
T ss_pred EEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCH----------HHHHHHHHHHHHhcCCCCEEEEEC-CccchHH
Confidence 3443 456677778877754 33 46777788887332 23344566666665 99999998 2334467
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCccc
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPEG 2085 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg 2085 (2304)
.|+++.+ |. +||.|++.+|..|.-.
T Consensus 77 ~~la~aa----D~--i~a~p~a~vg~iGv~~ 101 (207)
T TIGR00706 77 YYIAMAA----DE--IVANPGTITGSIGVIL 101 (207)
T ss_pred HHHHhcC----CE--EEECCCCeEEeeeEEE
Confidence 7777654 65 8999999888766643
No 243
>PRK07051 hypothetical protein; Validated
Probab=94.71 E-value=0.039 Score=55.25 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=32.2
Q ss_pred CCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 684 ~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
......|+||.+|+|.++.+++|+.|+.||+|++|+
T Consensus 44 ~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 44 MKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 334457999999999999999999999999999986
No 244
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=94.67 E-value=0.29 Score=57.87 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhcc-CCCEEEE-ecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcC-Cchhhhhccc
Q 000086 1985 SATKTAQALMDFNRE-ELPLFIL-ANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL-RGGAWVVVDS 2061 (2304)
Q Consensus 1985 sa~K~a~~i~~~~~~-~lPLv~l-~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~-~GGa~vv~~~ 2061 (2304)
+..-..+.++.+... ++-.|+| .|++|......+ . ....+..+.....|+++++- |-+ .||.|+++.
T Consensus 22 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~---~----~~~~l~~~~~~~kpVia~v~--g~a~s~gy~la~~- 91 (211)
T cd07019 22 GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASE---V----IRAELAAARAAGKPVVVSAG--GAAASGGYWISTP- 91 (211)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHH---H----HHHHHHHHHhCCCCEEEEEC--CeehhHHHHHHHh-
Confidence 467778888888764 6665555 777774432221 1 23456778888999999998 444 556666665
Q ss_pred ccCCccceeecccCcEEEeeCcc
Q 000086 2062 RINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2062 ~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
+|. +||.|++++|.++.-
T Consensus 92 ---aD~--i~a~~~a~~gsiGv~ 109 (211)
T cd07019 92 ---ANY--IVANPSTLTGSIGIF 109 (211)
T ss_pred ---CCE--EEEcCCCEEEEeEEE
Confidence 366 999999999877743
No 245
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=94.55 E-value=0.053 Score=58.66 Aligned_cols=65 Identities=18% Similarity=0.342 Sum_probs=45.0
Q ss_pred ceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe---eC--CCCccCC----CCEEEEEecCCCCc
Q 000086 696 CKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK---MA--EGQAMQA----GELIARLDLDDPSA 761 (2304)
Q Consensus 696 Gkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i---~~--~G~~v~~----G~~La~l~~~~~~~ 761 (2304)
|.|+.+.. ++|++|++|++++.||+.|...++.||.+|+|..+ +. |+ .++. .-=|+.|.+.++..
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~~~P~-lln~~p~~~gWl~~i~~~d~~~ 105 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELLDNPE-LLNSDPYGDGWLIKIKPSDPEE 105 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHHT-TT-HHHHSTTTTTEEEEEEESCGGG
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccccccChH-HhccCCCCCCeEEEEEeCCHHH
Confidence 55655544 55999999999999999999999999999999887 22 32 3322 23478888776543
No 246
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=94.22 E-value=0.083 Score=51.61 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=31.2
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
-...|+||++|+|.++++++||.|+.|++|++|+
T Consensus 38 ~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 38 MEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred ceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 3567999999999999999999999999999984
No 247
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=94.16 E-value=0.095 Score=54.92 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=35.7
Q ss_pred EEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 699 LRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 699 v~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
.+..|++||+|++||.|++-+. -|..+|.||.+|+|+.|
T Consensus 42 ~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I 80 (101)
T PF13375_consen 42 AEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAI 80 (101)
T ss_pred ceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEE
Confidence 4579999999999999999986 66889999999999988
No 248
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=94.15 E-value=0.46 Score=55.92 Aligned_cols=93 Identities=17% Similarity=0.149 Sum_probs=63.1
Q ss_pred CccC---HHHHHHHHHHHHHhhcc-CCC-EEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc
Q 000086 1979 QVWF---PDSATKTAQALMDFNRE-ELP-LFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2053 (2304)
Q Consensus 1979 g~~~---p~sa~K~a~~i~~~~~~-~lP-Lv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G 2053 (2304)
|.+. +.+.....++++.+... ++- |++-.|++|.+.... ......+..+..++.|+++++- +-++.|
T Consensus 9 g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~-------~~i~~~i~~~~~~~kpvia~v~-g~~~s~ 80 (208)
T cd07023 9 GTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVAS-------EEIYREIRRLRKAKKPVVASMG-DVAASG 80 (208)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHH-------HHHHHHHHHHHhcCCcEEEEEC-CcchhH
Confidence 4554 67888889999988653 444 455578777443221 2234567778888999999998 223445
Q ss_pred hhhhhcccccCCccceeecccCcEEEeeCccc
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEG 2085 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg 2085 (2304)
|.|+++. +|. +||.|++.+|..|.-.
T Consensus 81 g~~lA~a----aD~--i~a~~~s~~g~iG~~~ 106 (208)
T cd07023 81 GYYIAAA----ADK--IVANPTTITGSIGVIG 106 (208)
T ss_pred HHHHHhh----CCE--EEECCCCeEEeCcEEE
Confidence 6666665 466 8999999998876533
No 249
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.03 E-value=0.18 Score=55.11 Aligned_cols=109 Identities=13% Similarity=0.194 Sum_probs=63.0
Q ss_pred eeeEeecCeEEEEEEEeeCCCeEEEe-----e-CCeE--EEEE----EEE---ecCCc--eEEEeCCeeEEEEeeecccc
Q 000086 607 QVSLNIEGSKYRIDMVRRGPGSYTLR-----M-NESE--IEAE----IHT---LRDGG--LLMQLDGNSHVVYAEEEAAG 669 (2304)
Q Consensus 607 ~vel~~~g~~y~v~v~~~~~~~y~l~-----i-ng~~--~~V~----v~~---l~dg~--l~v~~~G~s~~v~~~ee~~~ 669 (2304)
.+.+.+||+.|.|++...+...-..- . .... -... ... ...|. +...+.|+...+++.+ +
T Consensus 4 ~~~itvng~~y~V~vee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ap~~G~V~~i~V~~---G 80 (130)
T PRK06549 4 KFKITIDGKEYLVEMEEIGAPAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSPMPGTILKVLVAV---G 80 (130)
T ss_pred eEEEEECCEEEEEEEEEccCccccccccCccccCCCcccCCccccccCCCCccCCCCCcEEECCCCEEEEEEEeCC---C
Confidence 36778899999999988653310000 0 0000 0000 000 11122 3344566666555543 2
Q ss_pred eEEEEeCceeccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEE
Q 000086 670 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 670 ~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~i 718 (2304)
-.+..+..-+.++...-...|.||..|+|.+++|++||.|+.||+|++|
T Consensus 81 d~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 81 DQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 2222222223333334456899999999999999999999999999987
No 250
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=93.92 E-value=0.76 Score=53.59 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=95.0
Q ss_pred CCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-G 2054 (2304)
+|.++...+..+...+-+... ..-||.+..|+|| |..-+|-.|.+.+..-+.|+.|++. |-+.. |
T Consensus 33 ~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpG----------G~V~aG~AIydtm~~ik~~V~ti~~--G~AaSmg 100 (200)
T COG0740 33 GGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG----------GSVTAGLAIYDTMQFIKPPVSTICM--GQAASMG 100 (200)
T ss_pred eeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCC----------cccchhHHHHHHHHhcCCCeEEEEe--cHHHhHH
Confidence 345555555555554444444 4689999999999 5666888999999999999999999 44333 6
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIK 2134 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 2134 (2304)
+.+.+...-+ . -|+.|+|++=+=-|.|.+. =...|+...++.++..-..|.+-+++.. ..+.++ + ++..
T Consensus 101 s~l~~aG~~g--~--r~~lPnsrimIHqP~gg~~--G~a~Di~i~A~ei~~~~~~l~~i~a~~T-Gq~~e~---i-~~d~ 169 (200)
T COG0740 101 SVLLMAGDKG--K--RFALPNARIMIHQPSGGAQ--GQASDIEIHAREILKIKERLNRIYAEHT-GQTLEK---I-EKDT 169 (200)
T ss_pred HHHHhcCCCC--C--ceeCCCceEEEecCCccCc--cCHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHH---H-HHhh
Confidence 6666665322 2 4788999998888886531 0011222222222222222222222221 112221 1 1122
Q ss_pred HHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccc
Q 000086 2135 AREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDK 2175 (2304)
Q Consensus 2135 ~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~ 2175 (2304)
+|+ ..=++..+++-|+||.|+...+
T Consensus 170 drd----------------~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 170 DRD----------------TWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred ccc----------------ccCCHHHHHHcCCcceeccccc
Confidence 222 3346889999999999997654
No 251
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=93.90 E-value=0.084 Score=58.48 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=31.8
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
=.+.|.||..|+|.+++|++||.|+.||+|++|+
T Consensus 106 meneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 106 MENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred ccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 3567999999999999999999999999999997
No 252
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.89 E-value=0.17 Score=63.43 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=54.3
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc----ccceeeecCCCcEEEEeeCCCCccCCCCEEEEEec
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM----KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM----Km~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~ 756 (2304)
..|+||.+| ++...++.||.|++||+|++|--+ ....+|+||.+|+|-.. ...-.|.+|+.|+.|..
T Consensus 245 ~~v~A~~~G-~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~-~~~~~v~~G~~l~~i~~ 315 (316)
T cd06252 245 CYVFAPHPG-LFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAAR-RPPGLVRRGDCLAVLAA 315 (316)
T ss_pred EEEEcCCCe-EEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEe-eCCCccCCCCEEEEEec
Confidence 469999999 556889999999999999998654 44678999999988654 23356999999998753
No 253
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=93.65 E-value=0.18 Score=67.91 Aligned_cols=110 Identities=13% Similarity=0.173 Sum_probs=65.6
Q ss_pred ceeeeEeecCeEEEEEEEeeCCCeEEEeeCCeEEEEEEE-E----ec-CCceEEEeCCeeEEEEeeecccceEEEEeCce
Q 000086 605 NSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIH-T----LR-DGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRT 678 (2304)
Q Consensus 605 ~~~vel~~~g~~y~v~v~~~~~~~y~l~ing~~~~V~v~-~----l~-dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t 678 (2304)
...+.+.+||+.|.+++...++- -.+...+....+... . .. ...+...+.|....+.+++ +-.+..+..-
T Consensus 477 ~~~~~~~vnG~~~~V~v~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~V~Ap~~G~I~~~~V~~---Gd~V~~Gd~l 552 (593)
T PRK14040 477 SETYTVEVEGKAYVVKVSEGGDI-SQITPAAPAAAPAAAAAAAPAAAAGEPVTAPLAGNIFKVIVTE---GQTVAEGDVL 552 (593)
T ss_pred CeEEEEEECCEEEEEEECCCCcc-ccccccccccccccccccccCCCCCceEECCccEEEEEEEeCC---CCEeCCCCEE
Confidence 45688899999999999765421 123333322221110 0 01 1234445566655554432 1122222222
Q ss_pred eccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEE
Q 000086 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 679 ~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~i 718 (2304)
+.++...-.+.|.||.+|+|.++.|++||.|+.||+|++|
T Consensus 553 ~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 553 LILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred EEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 2333333346799999999999999999999999999987
No 254
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=93.57 E-value=0.086 Score=57.08 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=41.5
Q ss_pred eeCCCceeEEE-EccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 691 VAETPCKLLRY-LVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 691 ~APmPGkvv~~-~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
..-+-|.|+-+ +.++|++|++|+++++||+-|-..+|.||.+|+|..+
T Consensus 34 aq~~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvev 82 (131)
T COG0509 34 AQDQLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEV 82 (131)
T ss_pred HHHhcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEe
Confidence 34456777776 4578999999999999999999999999999999776
No 255
>PRK12999 pyruvate carboxylase; Reviewed
Probab=93.54 E-value=0.33 Score=70.04 Aligned_cols=103 Identities=22% Similarity=0.423 Sum_probs=83.9
Q ss_pred eEEEeCCeeEEEEeeecccceEEEEeCceeccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeec
Q 000086 650 LLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729 (2304)
Q Consensus 650 l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~a 729 (2304)
+.+.+||+.+.|.+.+...... ..........++..|.|||||+|++|+|++||.|++||+|++||+||||++|.|
T Consensus 1043 ~~~~vnG~~~~V~v~d~~~~~~----~~~~~~a~~~~~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~A 1118 (1146)
T PRK12999 1043 VYFELNGQPREVQVRDRSVKST----VAAREKADPGNPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITA 1118 (1146)
T ss_pred EEEEECCEEEEEEEecCccccc----cccccccCCCCCceEeCCceEEEEEEEcCCCCEECCCCEEEEEEccccceEEec
Confidence 5566777777777655432111 111112345667899999999999999999999999999999999999999999
Q ss_pred CCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 730 PASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 730 p~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
|.+|+|+.+ +++|+.|+.|++|++|++
T Consensus 1119 p~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999 1119 PVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred CCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence 999999999 999999999999999863
No 256
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=93.38 E-value=1 Score=53.59 Aligned_cols=96 Identities=19% Similarity=0.103 Sum_probs=63.1
Q ss_pred HHHHH-HHHHHHhhc-cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-hhhhhccc
Q 000086 1985 SATKT-AQALMDFNR-EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-GAWVVVDS 2061 (2304)
Q Consensus 1985 sa~K~-a~~i~~~~~-~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-Ga~vv~~~ 2061 (2304)
.+..+ ++.+.+... ..-|+-+..|++|-+.-. .+--|..-.|-.|.+++...+-|+.+++. |-+.+ ++.+.++.
T Consensus 53 ~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~-G~~iG~v~~glaIyD~m~~ik~~V~Tv~~--G~AaS~AslIl~aG 129 (222)
T PRK12552 53 VTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYT-GDAIGFETEAFAICDTMRYIKPPVHTICI--GQAMGTAAMILSAG 129 (222)
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccc-cccccccccHHHHHHHHHhcCCCeEEEEE--eehhhHHHHHHhCC
Confidence 55554 455555433 368999999999922100 01112345677899999999999999999 77766 44444443
Q ss_pred ccCCccceeecccCcEEEeeCccchh
Q 000086 2062 RINSDHIEMYADRTAKGNVLEPEGMI 2087 (2304)
Q Consensus 2062 ~i~~d~~~~~A~p~A~~gvl~Peg~v 2087 (2304)
+- .. .+|.|+|++-+-.|.+.+
T Consensus 130 ~k--g~--R~alpns~iMIHqP~~~~ 151 (222)
T PRK12552 130 TK--GQ--RASLPHATIVLHQPRSGA 151 (222)
T ss_pred CC--Cc--eecCCCcEEEeccCCccc
Confidence 21 12 678899999998887653
No 257
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.37 E-value=0.19 Score=62.49 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=53.3
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc---ccceeeecCCCcEEEEeeCCCCccCCCCEEEEE
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM---KMCMPLLSPASGVLQFKMAEGQAMQAGELIARL 754 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM---Km~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l 754 (2304)
...|+||.+| ++...++.||.|++||+|++|=-. ....+++||.+|+|-.+ ...-.|.+|++|+.|
T Consensus 229 ~~~v~A~~~G-l~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~-~~~p~v~~G~~l~~i 297 (298)
T cd06253 229 VVYVNAETSG-IFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTL-REYPLVYEGSLVARI 297 (298)
T ss_pred eEEEEcCCCe-EEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEe-ecCCeecCCceEEEe
Confidence 3468999999 556779999999999999999552 34678999999998665 334678999999876
No 258
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=93.36 E-value=0.22 Score=59.98 Aligned_cols=88 Identities=18% Similarity=0.303 Sum_probs=72.7
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhh
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVV 2058 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv 2058 (2304)
+.+..+.+...-|+|+...+. .|+..+.+|+| |...+.-+|+.++..+..|+.++|+ +-..-||+.++
T Consensus 70 ~~I~i~dse~v~raI~~~~~~-~~IdLii~TpG----------G~v~AA~~I~~~l~~~~~~v~v~VP-~~A~SAGTlIA 137 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKD-KPIDLIIHTPG----------GLVDAAEQIARALREHPAKVTVIVP-HYAMSAGTLIA 137 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCC-CceEEEEECCC----------CcHHHHHHHHHHHHhCCCCEEEEEC-cccccHHHHHH
Confidence 466778888999999998764 48988899999 5666778899999999999999887 45566788888
Q ss_pred cccccCCccceeecccCcEEEeeCcc
Q 000086 2059 VDSRINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2059 ~~~~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
++. |- +++.|+|.+|.++|.
T Consensus 138 LaA----De--IvM~p~a~LGpiDPq 157 (285)
T PF01972_consen 138 LAA----DE--IVMGPGAVLGPIDPQ 157 (285)
T ss_pred HhC----Ce--EEECCCCccCCCCcc
Confidence 875 54 899999999999994
No 259
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=93.22 E-value=1.3 Score=51.10 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=68.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCCC-CCCchhhh-----------hhhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRDL-----------FEGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~G-f~~G~~~e-----------~~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
..+.+.......++++.+.+ ..+-+|+|...++ |+.|..-. .....+....++..+..+++|+|+.|
T Consensus 21 N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v 100 (195)
T cd06558 21 NALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAV 100 (195)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 58889999999999999987 5677777776544 67775421 23455667788888999999999999
Q ss_pred cCCCcCCchh-hhhcccccCCccceeecccCcEEEeeC
Q 000086 2046 PMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2046 ~~~ge~~GGa-~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
- |.+.||+ .+++. .|+ .++.++++++.-+
T Consensus 101 ~--G~a~g~G~~la~~----~D~--~i~~~~~~~~~pe 130 (195)
T cd06558 101 N--GAALGGGLELALA----CDI--RIAAEDAKFGLPE 130 (195)
T ss_pred C--CeeecHHHHHHHh----CCE--EEecCCCEEechh
Confidence 8 5555644 44443 466 7777777766544
No 260
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=93.21 E-value=0.18 Score=58.01 Aligned_cols=39 Identities=21% Similarity=0.120 Sum_probs=36.5
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChH
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1818 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~ 1818 (2304)
+|++++|.|.+.++|++++..||+++|.+++.|+..||-
T Consensus 59 ~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v 97 (178)
T cd07021 59 IPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI 97 (178)
T ss_pred CCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE
Confidence 599999999999999999999999999999999988864
No 261
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=93.15 E-value=0.53 Score=53.67 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=60.9
Q ss_pred CcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEE-----------------------EeCCCCCCCHHH
Q 000086 269 SPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKII-----------------------EEGPITVAPLET 325 (2304)
Q Consensus 269 ~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKii-----------------------eeaPa~~l~~e~ 325 (2304)
....||||+-| -++-++.|...--+-+-+.+-| ||+|--+ ..-|++ +.+.+
T Consensus 21 ~~~~IeEyviG-~~~~~~yFySpi~~~~Ellg~D----~R~esn~Dg~~RlPa~~Ql~~~~~p~~vvvGn~p~v-lRESL 94 (188)
T PF06973_consen 21 ENAIIEEYVIG-VPFYFHYFYSPIKDRVELLGID----RRYESNIDGLVRLPAKQQLELNIEPSYVVVGNIPAV-LRESL 94 (188)
T ss_dssp CCEEEEE---S-EEEEEEEEEETTTTEEEEEEEE----EEEEEETCCCCCS-HHHHHCCT----EEEEEEEEEE-E-GGG
T ss_pred cccEEEEEecC-ceEEEeeecccccCceeeeeee----eEEEecchhhhcCCcHHHhccCCCCceEEECCcccc-hhHhh
Confidence 57899999987 5777887765544444444433 3333211 122444 56677
Q ss_pred HHHHHHHHHHHHHHC------CceeeeEEEEEEEccCCcEEEEEeccCCCCC
Q 000086 326 VKKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2304)
Q Consensus 326 ~~~m~e~A~rlakal------Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2304)
.+++.+++.+++++. |..|++++|.++++ +.++++.|+.+|+.++
T Consensus 95 L~~vfe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~-dle~vvfevS~RI~gG 145 (188)
T PF06973_consen 95 LPKVFEMGERFVEASKELVPPGMIGPFCLQSIVTD-DLEFVVFEVSARIVGG 145 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT---EEEEEEEEE-T-TSSEEEEEEESSB-GG
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccceEEEEEcC-CceEEEEEEeccccCC
Confidence 788888888877765 88899999999994 7899999999999764
No 262
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=93.09 E-value=0.6 Score=57.68 Aligned_cols=228 Identities=18% Similarity=0.184 Sum_probs=134.4
Q ss_pred EEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHC
Q 000086 104 QFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAA 183 (2304)
Q Consensus 104 e~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~a 183 (2304)
..|.||..+ .+.+-|.+.+|....--||-....+-++.....+++ +++...+ -.-++..++...
T Consensus 47 ~~Y~VP~~T---------L~~~~A~~LGI~~~~DLfGGvVph~FvATKaItH~L--~~~~a~a-----P~GW~~~fa~~~ 110 (355)
T PF11379_consen 47 PPYFVPDDT---------LVGAQAARLGIRGEQDLFGGVVPHAFVATKAITHPL--VGPDAAA-----PAGWSPAFAERV 110 (355)
T ss_pred ceeecCCcc---------hhhhHHHHcCCCChHhccCCCcCcceeeeccccCcC--CCCCCCC-----CCCcCHHHHHHH
Confidence 477887532 233678888887777777766666666666655653 2222111 111222333332
Q ss_pred CCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhcc--CCcEEEeecCCCCCcCeEEECCHHHHHHHHHH
Q 000086 184 NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV--GYPAMIKASWGGGGKGIRKVHNDDEVRALFKQ 261 (2304)
Q Consensus 184 GVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I--GyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~ 261 (2304)
.=-+.|.. ++.|.+|+..++..+ +-||=+||..+.||+|-.++.+.++|..++..
T Consensus 111 ~~~vL~G~-----------------------tvFs~~DA~~A~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~ 167 (355)
T PF11379_consen 111 RDAVLPGY-----------------------TVFSREDARRAARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAA 167 (355)
T ss_pred hhhccCCc-----------------------cccCHHHHHHHHHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHc
Confidence 22233322 378999999888764 67999999999999999999999999999987
Q ss_pred HHhhC-CCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccc-cceEEEeC------------CCCCCCHHHHH
Q 000086 262 VQGEV-PGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR-HQKIIEEG------------PITVAPLETVK 327 (2304)
Q Consensus 262 ~~~e~-~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr-~qKiieea------------Pa~~l~~e~~~ 327 (2304)
+-... ....+.+|+-++...-+||--+.-. |..++.++..|....+ .+++...+ -...+++.++.
T Consensus 168 ~~~~~l~~~GlVLE~~L~~~~T~SVGqv~v~-g~~~SY~GtQ~lT~dn~G~~VYGGS~L~VvRGg~~aLl~l~l~~~~r~ 246 (355)
T PF11379_consen 168 LDDAELARHGLVLEEDLEEVVTYSVGQVRVA-GLVASYYGTQRLTRDNQGEEVYGGSDLVVVRGGFDALLALDLPDDVRL 246 (355)
T ss_pred CCHHHHHhCCEEEecccCCCceeeEEEEEEC-CEEEEEeeEeecccCCCCCEeecCceEEEEeCCHHHHhcCCCCHHHHH
Confidence 64322 2468999999988878888654432 5667776655544332 23443322 12335565555
Q ss_pred HHHHHHHHH----HHHC-Cce-eeeEEEEEEEc-cCCcE--EEEEeccCCCCCc
Q 000086 328 KLEQAARRL----AKCV-NYV-GAATVEYLYSM-ETGEY--YFLELNPRLQVEH 372 (2304)
Q Consensus 328 ~m~e~A~rl----akal-Gy~-Ga~tVEfl~d~-~~g~~--yfLEINpRlqgeh 372 (2304)
.++++ ... .... |+. +--+-|..... ..|.. =+||=.-|++|..
T Consensus 247 AV~qA-~~Yd~Aa~~~yPgf~ASRRNYDVa~G~da~G~~r~GVLEQSWRvGGAS 299 (355)
T PF11379_consen 247 AVEQA-RAYDAAAQACYPGFFASRRNYDVAQGLDAQGRWRSGVLEQSWRVGGAS 299 (355)
T ss_pred HHHHH-HHHHHHHHHhCchhheeeccceeeeccCCCCCeeeceeeeeeccCCCC
Confidence 54432 221 1111 221 22223332221 13333 3789888988754
No 263
>COG3608 Predicted deacylase [General function prediction only]
Probab=93.07 E-value=0.21 Score=62.04 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=53.7
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc---ccceeeecCCCcEEEEeeCCCCccCCCCEEEEEe
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM---KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLD 755 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM---Km~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~ 755 (2304)
...++||-.| ++.++|+.||.|++||+|+.|=.+ +-+.+|+|+.+|+|-.....+ .+++|+.+..+.
T Consensus 256 ~~~i~Ap~~G-~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~-~v~~Gdl~~~v~ 325 (331)
T COG3608 256 DEMIRAPAGG-LVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLR-LVQPGDLLKVVG 325 (331)
T ss_pred cceeecCCCc-eEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeecc-ccCCCCeeeeec
Confidence 3469999999 678999999999999999999887 788899999999996552222 355567776654
No 264
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.97 E-value=0.25 Score=61.13 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=51.9
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc--ccceeeecCCCcEEEEeeCCCCccCCCCEEEEE
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM--KMCMPLLSPASGVLQFKMAEGQAMQAGELIARL 754 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM--Km~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l 754 (2304)
..++||.+|.+. ..++.||.|++||+|+.|.-. ....+|+||.+|+|.. ....-.|.+|+.|+.|
T Consensus 220 ~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~-~~~~~~v~~G~~l~~i 286 (287)
T cd06251 220 VWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIG-RNNLPLVNEGDALFHI 286 (287)
T ss_pred eEEecCCCeEEE-EecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEE-ecCCCccCCCCEEEEe
Confidence 469999999765 689999999999999999541 1236899999999944 4455578899999876
No 265
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=92.93 E-value=1.9 Score=51.55 Aligned_cols=93 Identities=22% Similarity=0.244 Sum_probs=63.4
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhhh--------hhhHHHHHHHHHHHHHcCCCCEEEEEcCCC
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDL--------FEGILQAGSTIVENLRTYKQPVFVYIPMMA 2049 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~e--------~~gilk~ga~iv~al~~~~vP~i~~I~~~g 2049 (2304)
..++++......++++.+. ...-+|++.-.+ .|+.|..-. .....+.+..++..+..+..|+|+.|- |
T Consensus 24 Nal~~~~~~~l~~~l~~~~-~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~--G 100 (229)
T PRK06213 24 NALSPAMIDALNAALDQAE-DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACT--G 100 (229)
T ss_pred CCCCHHHHHHHHHHHHHhh-ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEc--C
Confidence 4788999999999999887 455666666543 377775311 112334455677888899999999988 5
Q ss_pred cCCc-hhhhhcccccCCccceeecccC-cEEEe
Q 000086 2050 ELRG-GAWVVVDSRINSDHIEMYADRT-AKGNV 2080 (2304)
Q Consensus 2050 e~~G-Ga~vv~~~~i~~d~~~~~A~p~-A~~gv 2080 (2304)
-+.| |.-+++. .|+ ++|.++ ++++.
T Consensus 101 ~a~GgG~~lal~----~D~--rva~~~~a~f~~ 127 (229)
T PRK06213 101 HAIAKGAFLLLS----ADY--RIGVHGPFKIGL 127 (229)
T ss_pred eeeHHHHHHHHh----CCe--eeEecCCcEEEC
Confidence 5555 4444554 466 788887 77765
No 266
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=92.88 E-value=0.27 Score=61.75 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=53.5
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc----ccceeeecCCCcEEEEeeCCCCccCCCCEEEEE
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM----KMCMPLLSPASGVLQFKMAEGQAMQAGELIARL 754 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM----Km~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l 754 (2304)
..-++||.+|.+ ...++.||.|++||+|++|=-. ....+++||.+|+|-.. ...-.|..|+.|+.|
T Consensus 255 ~~~v~Ap~~Gi~-~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~-~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 255 DCFIFAEDDGLI-EFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAAR-HFPGLIKSGDCIAVL 324 (325)
T ss_pred CeEEEcCCCeEE-EEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEE-eCCCccCCCCEEEEe
Confidence 346999999955 5889999999999999999653 24678999999998664 344678889998876
No 267
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=92.66 E-value=2.7 Score=50.63 Aligned_cols=95 Identities=14% Similarity=0.204 Sum_probs=68.1
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh---------hhhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD---------LFEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~---------e~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
...++++......++++.++. .++-+|++.-.+ .|+.|..- ......+....++..+..+..|+|+.|-
T Consensus 19 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~ 98 (245)
T PF00378_consen 19 RNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVN 98 (245)
T ss_dssp TTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeeccc
Confidence 468899999999999999977 455567665544 37777642 2234456678889999999999999998
Q ss_pred CCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.| |.-+++. .|+ ++|.++++++.
T Consensus 99 --G~a~GgG~~lala----~D~--~ia~~~a~f~~ 125 (245)
T PF00378_consen 99 --GHAVGGGFELALA----CDF--RIAAEDAKFGF 125 (245)
T ss_dssp --SEEETHHHHHHHH----SSE--EEEETTTEEET
T ss_pred --ccccccccccccc----cce--EEeecccceee
Confidence 55555 4444444 477 88888888665
No 268
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.36 E-value=0.85 Score=54.31 Aligned_cols=101 Identities=24% Similarity=0.242 Sum_probs=74.7
Q ss_pred cccccccCCCccCHHHHH-HHHHHHHHh-hccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1970 HERVVPQAGQVWFPDSAT-KTAQALMDF-NREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1970 ~~~~~~~~gg~~~p~sa~-K~a~~i~~~-~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
.|+++-- ||.+.++-+. =+||++-+- .....||..+.|+|| |.+-+|-.|.|.+.-.+-|+-|+.+
T Consensus 91 reRIi~l-g~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPG----------G~vtaglAIYDtMq~ik~~V~Tic~- 158 (275)
T KOG0840|consen 91 RERIVFL-GQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPG----------GSVTAGLAIYDTMQYIKPDVSTICV- 158 (275)
T ss_pred Hhheeee-CCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCC----------CccchhhhHHHHHHhhCCCceeeeh-
Confidence 3444433 6777776554 467777765 347899999999999 3345777899999999999999999
Q ss_pred CCcCCc-hhhhhcccccCCccceeecccCcEEEeeCccchh
Q 000086 2048 MAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMI 2087 (2304)
Q Consensus 2048 ~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v 2087 (2304)
|-+.+ ||++....+-+ . -||-|++|+-+--|.|.+
T Consensus 159 -G~Aas~aalLLaaG~KG--~--R~alPnsriMIhQP~gga 194 (275)
T KOG0840|consen 159 -GLAASMAALLLAAGAKG--K--RYALPNSRIMIHQPSGGA 194 (275)
T ss_pred -hhHHhHHHHHHhcCCCc--c--eeecCCceeEEeccCCCc
Confidence 77777 56555554443 2 589999999999998874
No 269
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=92.20 E-value=0.2 Score=60.61 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=59.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcce-------Eec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i-------~lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+ ++. |...+.+.+|... .-+.+.+.+.+ ...
T Consensus 94 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~e-A~~ 172 (249)
T PRK07110 94 PIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAE-LKK 172 (249)
T ss_pred CCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHH-HHH
Confidence 3699999999999999999999999999988653 322 2233555555322 11233444444 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
.|++|.++++ .+..+.+.++..-+
T Consensus 173 ~Glv~~vv~~-~~l~~~a~~~a~~l 196 (249)
T PRK07110 173 RGVPFPVLPR-AEVLEKALELARSL 196 (249)
T ss_pred cCCCeEEeCh-HHHHHHHHHHHHHH
Confidence 9999999974 45566666665433
No 270
>PRK06748 hypothetical protein; Validated
Probab=92.14 E-value=0.21 Score=50.50 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=31.6
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...+.||..|+|.+++|++||.|..||+|+.|+.
T Consensus 42 ~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 42 KVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred eEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 3579999999999999999999999999999974
No 271
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=91.96 E-value=0.69 Score=66.67 Aligned_cols=125 Identities=16% Similarity=0.352 Sum_probs=100.2
Q ss_pred CeEEEee-CCeEEEEEEEEec----CC--ceEEEeCCeeEEEEeeecccceEEEEeCceeccccCCCCCeeeeCCCceeE
Q 000086 627 GSYTLRM-NESEIEAEIHTLR----DG--GLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLL 699 (2304)
Q Consensus 627 ~~y~l~i-ng~~~~V~v~~l~----dg--~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv 699 (2304)
..+.+.+ .|+.+.|++...+ +| .+.+.+||+.+.+.+.+..... .+.........+++.|.|||||+|+
T Consensus 1011 ~e~~v~~~~g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~----~~~~~~KAd~~~~~~I~a~~~G~v~ 1086 (1143)
T TIGR01235 1011 EEIEVDIEKGKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKA----EAAVRRKADPGNPAHVGAPMPGVII 1086 (1143)
T ss_pred cEEEEEecCCcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCccccc----ccccccccccccCceeecCCCcEEE
Confidence 4567777 5887777665432 23 3457789999988887653211 1222223345678899999999999
Q ss_pred EEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 700 RYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 700 ~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
+|+|++||.|++||+|++||||||+++|.||.+|+|+++ +++|+.|+.|++|++|+
T Consensus 1087 ~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1087 EVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred EEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 999999999999999999999999999999999999999 99999999999999885
No 272
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=91.93 E-value=0.37 Score=61.41 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=51.4
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc-cc---cceeeecCCCcEEEEeeCCCCccCCCCEEEEE
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV-MK---MCMPLLSPASGVLQFKMAEGQAMQAGELIARL 754 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa-MK---m~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l 754 (2304)
...++||-.| ++...++.||.|++||+|++|=- .. -+.+|+||.+|+|-. ....-.|.+|+.|+.|
T Consensus 289 ~~~v~Ap~~G-l~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~-~~~~~~V~~G~~l~~I 358 (359)
T cd06250 289 VEMLYAPAGG-MVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFA-RASRRFVRAGDELAKI 358 (359)
T ss_pred cEEEeCCCCe-EEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEE-ecCCccccCCCeEEEe
Confidence 3469999999 55688999999999999999943 21 222369999999754 4556688999999876
No 273
>PRK05869 enoyl-CoA hydratase; Validated
Probab=91.89 E-value=0.2 Score=59.69 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=59.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+.+.+|... .-+...+.+.+ ...
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~e-A~~ 177 (222)
T PRK05869 99 PKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEE-ALA 177 (222)
T ss_pred CCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 369999999999999999999999999998865443 2 2334555666432 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.+++++ +..+.+.+|..
T Consensus 178 ~Glv~~vv~~~-~l~~~a~~~a~ 199 (222)
T PRK05869 178 LGLIDEMVAPD-DVYDAAAAWAR 199 (222)
T ss_pred CCCCCEeeCch-HHHHHHHHHHH
Confidence 89999999754 56666666654
No 274
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=91.84 E-value=0.31 Score=60.34 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=47.6
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc--cccceeeecCCCcEEEEeeCCCCccCCCCEE
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV--MKMCMPLLSPASGVLQFKMAEGQAMQAGELI 751 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa--MKm~~~l~ap~~G~V~~i~~~G~~v~~G~~L 751 (2304)
+...++||.+| ++...++.||.|++||+|++|=- -....+|+||.+|+|-.+-. .-.|.+|+.|
T Consensus 222 ~~~~v~Ap~~G-~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~-~~~v~~G~~l 287 (288)
T cd06254 222 DVYYVTSPASG-LWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA-TLPVRKGDPL 287 (288)
T ss_pred CCEEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC-CCccCCCCcc
Confidence 34679999999 56688999999999999999922 13466899999999865511 2345555554
No 275
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=91.81 E-value=0.18 Score=61.19 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=57.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEecChH-HHHHhhcccc----cccccccCcceeecccCc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTGFS-ALNKLLGREV----YSSHMQLGGPKIMATNGV 1846 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~ltG~~-al~~~lG~~v----y~s~~~lGG~~i~~~nGv 1846 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++. +++.|+. .+.+.+|... .-+.+.+.+.+ ...-|+
T Consensus 97 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~~l~~~~g~~~a~~lll~g~~~~a~e-A~~~GL 175 (257)
T PRK06495 97 AKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLAGGGKHAMRLFGHSLTRRMMLTGYRVPAAE-LYRRGV 175 (257)
T ss_pred CCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCccccHHHHHHHhCHHHHHHHHHcCCeeCHHH-HHHcCC
Confidence 369999999999999999999999999998864 4555543 3555566322 11222233322 346899
Q ss_pred eEEEecCcHHHHHHHHHHHh
Q 000086 1847 VHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1847 ~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
++.++++ .+..+.+.+|..
T Consensus 176 v~~vv~~-~~~~~~a~~~a~ 194 (257)
T PRK06495 176 IEACLPP-EELMPEAMEIAR 194 (257)
T ss_pred cceecCH-HHHHHHHHHHHH
Confidence 9999975 444555555543
No 276
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=91.81 E-value=0.2 Score=60.82 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=56.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c---C-hHHHHHhhcc----cccccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T---G-FSALNKLLGR----EVYSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t---G-~~al~~~lG~----~vy~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . | ..-+-+.+|. ++.-+...+.+.+ ...
T Consensus 92 ~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 170 (255)
T PRK06563 92 SKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQE-ALR 170 (255)
T ss_pred CCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHH-HHH
Confidence 369999999999999999999999999998875433 1 1 2223444553 2212233444443 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.+.+|.
T Consensus 171 ~Glv~~vv~~~-~l~~~a~~~a 191 (255)
T PRK06563 171 LGLVQEVVPPG-EQLERAIELA 191 (255)
T ss_pred cCCCcEeeCHH-HHHHHHHHHH
Confidence 89999999764 4444444443
No 277
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=91.78 E-value=0.21 Score=61.11 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=55.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcce-------Eec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i-------~lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+ ++. |..-+-..+|... .-+.+.+. ++-...
T Consensus 109 ~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~-a~eA~~ 187 (272)
T PRK06142 109 RKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDID-AAEAEK 187 (272)
T ss_pred CCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcC-HHHHHH
Confidence 3699999999999999999999999999998754 332 2222334444221 11112222 222457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|++|.++++.++..+.+.+|.
T Consensus 188 ~GLv~~vv~~~~~l~~~a~~~a 209 (272)
T PRK06142 188 IGLVNRVYDDADALLAAAHATA 209 (272)
T ss_pred cCCccEecCCHHHHHHHHHHHH
Confidence 9999999976444445555554
No 278
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=91.57 E-value=0.25 Score=60.04 Aligned_cols=90 Identities=14% Similarity=0.061 Sum_probs=57.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c---ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T---GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t---G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-..+|... .-+.+.+.+. -....
T Consensus 96 ~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~l~g~~~~a~-eA~~~ 174 (255)
T PRK07112 96 PYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVLPFLIRRIGTQKAHYMTLMTQPVTAQ-QAFSW 174 (255)
T ss_pred CCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchhhHHHHHHhCHHHHHHHHHhCCcccHH-HHHHc
Confidence 369999999999999999999999999998876444 2 1122333344322 1111222222 23469
Q ss_pred CceEEEecCcHHHHHHHHHHHhcCC
Q 000086 1845 GVVHLTVSDDLEGISAILKWLSYVP 1869 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~LsylP 1869 (2304)
|++|.+++++++.+..+.+-++-.|
T Consensus 175 Glv~~vv~~~~~~~~~~a~~l~~~~ 199 (255)
T PRK07112 175 GLVDAYGANSDTLLRKHLLRLRCLN 199 (255)
T ss_pred CCCceecCcHHHHHHHHHHHHHhCC
Confidence 9999999876655555444454443
No 279
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=91.44 E-value=0.64 Score=60.33 Aligned_cols=192 Identities=15% Similarity=0.253 Sum_probs=109.3
Q ss_pred HHhcCCCCCccEEEEECc---h--HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCC
Q 000086 39 CRSLGGKKPIHSILIANN---G--MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTN 113 (2304)
Q Consensus 39 ~~~~~g~~~~~kILIan~---G--~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~ 113 (2304)
.+..+|..-.-+|.|..- + .-=....+..++.||.++ |+.+.| +++.|......+..
T Consensus 176 y~~~~~~~~~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~v----------I~d~~~-------L~y~~g~L~~~~~~- 237 (445)
T PF14403_consen 176 YRTFGGRVEKPNIAIVDFLEYPTLSEFEVFQRLFEEHGYDCV----------ICDPRD-------LEYRDGRLYAGGRP- 237 (445)
T ss_pred HHHhcCcCCCCcEEEEecccCCccchHHHHHHHHHHcCCceE----------ecChHH-------ceecCCEEEECCEe-
Confidence 445666555567777752 1 112356677788999875 344443 33455555543322
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCC-------
Q 000086 114 NNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVP------- 186 (2304)
Q Consensus 114 ~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVP------- 186 (2304)
+|.|-.-+-... +++-|+ +...|.++..+..+.++|| -..+.++||..+..+-....-.
T Consensus 238 ------ID~VyRR~Vt~e---~l~~~d---~~~~li~Ay~~~av~~vgs--frs~l~hnK~iFaiL~d~~~~~~Lt~ee~ 303 (445)
T PF14403_consen 238 ------IDAVYRRFVTSE---LLERYD---EVQPLIQAYRDGAVCMVGS--FRSQLLHNKIIFAILHDERTTAFLTAEER 303 (445)
T ss_pred ------eehhhHhhhhHH---hhhccc---cchHHHHHHhcCCeEEecc--hhhhhhhhhHHHHHhcChhhcccCCHHHH
Confidence 344443332221 222222 3344666666667777765 4568888998888776654322
Q ss_pred -----cCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEE--CCHHHHHHHH
Q 000086 187 -----TLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV--HNDDEVRALF 259 (2304)
Q Consensus 187 -----tpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V--~s~eEL~~a~ 259 (2304)
.+||... ++ .+. -.|+. ..-++.+++..-.=-+||||.++.||+||.+= .++++..+++
T Consensus 304 ~~I~~HvP~T~~---l~--~~~-----~~~~g----~~~dL~~~~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l 369 (445)
T PF14403_consen 304 AFIRRHVPWTRL---LT--AGR-----TTYQG----EDVDLVEFAIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAAL 369 (445)
T ss_pred HHHHHhCCceEE---Ec--Ccc-----ccccc----cchhHHHHHHhchhcEEeccccccCCCCeEECCcCCHHHHHHHH
Confidence 2334320 00 000 00000 11233333333334579999999999999974 5788889888
Q ss_pred HHHHhhCCCCcEEEEEecccc
Q 000086 260 KQVQGEVPGSPIFIMKVASQS 280 (2304)
Q Consensus 260 ~~~~~e~~~~~i~VEeyI~g~ 280 (2304)
+++. +.++++|||+.-.
T Consensus 370 ~~a~----~~~yilQe~v~~~ 386 (445)
T PF14403_consen 370 EEAA----REPYILQEYVRPP 386 (445)
T ss_pred HHHh----cCCcEEEEEecCC
Confidence 8876 4599999999653
No 280
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=91.34 E-value=0.2 Score=61.13 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=59.3
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEec---ChHHHHHhhccc----ccccccccCcceeecccC
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT---GFSALNKLLGRE----VYSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~lt---G~~al~~~lG~~----vy~s~~~lGG~~i~~~nG 1845 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++. +++. |...+-+.+|.. +.-+.+.+.+.+ ...-|
T Consensus 102 kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~~G 180 (265)
T PRK05674 102 IPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFDGRR-ARELG 180 (265)
T ss_pred CCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHHHHHHhCHHHHHHHHHhCcccCHHH-HHHCC
Confidence 69999999999999999999999999998865 3333 222344445532 222333444444 45789
Q ss_pred ceEEEecCcHHHHHHHHHHHhcC
Q 000086 1846 VVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
++|-++++ .+..+.+.+|..-+
T Consensus 181 lv~~vv~~-~~l~~~a~~~a~~l 202 (265)
T PRK05674 181 LLAESYPA-AELEAQVEAWIANL 202 (265)
T ss_pred CcceecCH-HHHHHHHHHHHHHH
Confidence 99999975 45666666665443
No 281
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=91.29 E-value=0.25 Score=60.02 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=56.0
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhccc----ccccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGRE----VYSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~----vy~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||+.++..||++|+.+++.+.+. |...+-+.+|.. +.-+.+.+.+.+ ....
T Consensus 99 kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~e-A~~~ 177 (255)
T PRK07260 99 KPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEK-ALEY 177 (255)
T ss_pred CCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHH-HHHc
Confidence 699999999999999999999999999999764431 222344444532 222233334333 3469
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~L 1865 (2304)
|++|.+++++ +..+.+.++.
T Consensus 178 Glv~~vv~~~-~l~~~a~~~a 197 (255)
T PRK07260 178 GFVYRVAESE-KLEKTCEQLL 197 (255)
T ss_pred CCcceecCHh-HHHHHHHHHH
Confidence 9999999754 3444454443
No 282
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=90.82 E-value=0.34 Score=58.26 Aligned_cols=85 Identities=25% Similarity=0.170 Sum_probs=56.0
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccccccccccCccee----ecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREVYSSHMQLGGPKI----MAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~vy~s~~~lGG~~i----~~~ 1843 (2304)
..|+|+.|.|.|+|+|+.++..+|++|+.+++.+.+.. -..+.+.+|..... ..-+-|-.+ ...
T Consensus 90 ~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~-~l~l~g~~~~a~eA~~ 168 (245)
T PF00378_consen 90 PKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRAR-ELLLTGEPISAEEALE 168 (245)
T ss_dssp SSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHH-HHHHHTCEEEHHHHHH
T ss_pred hhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccc-ccccccccchhHHHHh
Confidence 36999999999999999999999999999998755321 12344444432210 011122222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|++|.++++++ ..+.++++.
T Consensus 169 ~Glv~~v~~~~~-l~~~a~~~a 189 (245)
T PF00378_consen 169 LGLVDEVVPDEE-LDEEALELA 189 (245)
T ss_dssp TTSSSEEESGGG-HHHHHHHHH
T ss_pred hcceeEEcCchh-hhHHHHHHH
Confidence 999999998766 444444443
No 283
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=90.79 E-value=0.25 Score=56.94 Aligned_cols=87 Identities=22% Similarity=0.156 Sum_probs=58.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+++.|.|.|+|+.++..+|++|+.+++.+.+-. ...+.+.+|... .-+...+- ++-...
T Consensus 93 ~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~-a~ea~~ 171 (195)
T cd06558 93 PKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRIS-AEEALE 171 (195)
T ss_pred CCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccC-HHHHHH
Confidence 47999999999999999999999999999987654322 122233333322 11122222 222457
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
.|++|.++++ .+..+.+.+|...
T Consensus 172 ~Glv~~~~~~-~~l~~~a~~~a~~ 194 (195)
T cd06558 172 LGLVDEVVPD-EELLAAALELARR 194 (195)
T ss_pred cCCCCeecCh-hHHHHHHHHHHhh
Confidence 9999999975 6677777777643
No 284
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=90.67 E-value=0.36 Score=58.79 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=57.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..+|++|+.+++.+.+ . |...+-..+|... .-+.+.+.+.+ ...
T Consensus 98 ~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~e-A~~ 176 (260)
T PRK07511 98 PKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAER-LHA 176 (260)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHH-HHH
Confidence 469999999999999999999999999999976443 2 1122444445322 11223344433 357
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.|++|.+++++ +..+.+.+|..
T Consensus 177 ~Glv~~vv~~~-~~~~~a~~~a~ 198 (260)
T PRK07511 177 LGVVNRLAEPG-QALAEALALAD 198 (260)
T ss_pred cCCccEeeCch-HHHHHHHHHHH
Confidence 99999999754 44555555543
No 285
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=90.64 E-value=0.28 Score=59.98 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=59.1
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |...+.+.+|... .-+...+.+.+ ...
T Consensus 106 ~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 184 (269)
T PRK06127 106 AKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAE-ALR 184 (269)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999764431 2223455555322 11222333332 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.++++ .+....+++|...+
T Consensus 185 ~Glv~~vv~~-~~l~~~a~~~a~~l 208 (269)
T PRK06127 185 IGLVHRVTAA-DDLETALADYAATI 208 (269)
T ss_pred cCCCCEeeCH-HHHHHHHHHHHHHH
Confidence 8999999974 45666666665544
No 286
>PF13437 HlyD_3: HlyD family secretion protein
Probab=90.54 E-value=0.29 Score=50.96 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=30.8
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEcc
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM 721 (2304)
.|+||..|.|..+.++.|+.|.+|++|+.|..+
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 489999999999999999999999999999864
No 287
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=90.27 E-value=0.34 Score=59.00 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=56.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 98 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 176 (261)
T PRK08138 98 PKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPE-ALA 176 (261)
T ss_pred CCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 36999999999999999999999999999886533 22 2233444455432 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.|++|.+++++ +..+.+++|..
T Consensus 177 ~Glv~~vv~~~-~l~~~a~~~a~ 198 (261)
T PRK08138 177 IGLVSEVVEDE-QTLPRALELAR 198 (261)
T ss_pred CCCCcEecCch-HHHHHHHHHHH
Confidence 89999999754 44555555543
No 288
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=90.10 E-value=0.2 Score=49.47 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=31.0
Q ss_pred CCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEE
Q 000086 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 684 ~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~i 718 (2304)
......+.||.+|+|.++++++||.|..||+|+.|
T Consensus 40 ~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 40 MKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 33345799999999999999999999999999986
No 289
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=90.07 E-value=0.36 Score=59.28 Aligned_cols=85 Identities=18% Similarity=0.074 Sum_probs=56.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+-..+|... .-+.+.+.+.+ ...
T Consensus 104 ~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~e-A~~ 182 (275)
T PRK09120 104 QKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRK-AAE 182 (275)
T ss_pred CCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHH-HHH
Confidence 369999999999999999999999999999876433 2 2233555555432 11223333222 457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|+++.+++++ +..+.+.+|.
T Consensus 183 ~Glv~~vv~~~-~l~~~a~~~a 203 (275)
T PRK09120 183 MGLVNESVPLA-QLRARTRELA 203 (275)
T ss_pred cCCcceecCHH-HHHHHHHHHH
Confidence 99999999754 3444444443
No 290
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=90.02 E-value=0.37 Score=58.78 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=56.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcce-------Eec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i-------~lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||.-++..||++|+.+++.+ ++. |...+...+|... .-+.+.+.+.+ ...
T Consensus 100 ~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~e-A~~ 178 (263)
T PRK07799 100 TKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAE-AKE 178 (263)
T ss_pred CCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999998653 332 2223444455322 11223333322 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.|++|.+++++. ..+.+++|..
T Consensus 179 ~Glv~~vv~~~~-l~~~a~~~a~ 200 (263)
T PRK07799 179 IGLIGHVVPDGQ-ALDKALELAE 200 (263)
T ss_pred cCCccEecCcch-HHHHHHHHHH
Confidence 899999997653 4445555543
No 291
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=90.01 E-value=0.32 Score=59.24 Aligned_cols=88 Identities=19% Similarity=0.168 Sum_probs=58.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhccc----ccccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGRE----VYSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~----vy~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-+.+|.. +.-+...+.+.+ ...
T Consensus 99 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 177 (262)
T PRK08140 99 PLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQ-AEQ 177 (262)
T ss_pred CCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 36999999999999999999999999999987543 21 222344444532 111223333333 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
.|++|.+++++ +..+.+.+|..-+
T Consensus 178 ~Glv~~vv~~~-~l~~~a~~~a~~i 201 (262)
T PRK08140 178 WGLIWRVVDDA-ALADEAQQLAAHL 201 (262)
T ss_pred cCCccEeeChH-HHHHHHHHHHHHH
Confidence 89999999754 4556666665443
No 292
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=89.97 E-value=0.25 Score=60.11 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=56.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 97 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 175 (259)
T TIGR01929 97 PKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQ-ALD 175 (259)
T ss_pred CCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHH-HHH
Confidence 3699999999999999999999999999988764432 2233455555322 11122222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.+.+|.
T Consensus 176 ~Glv~~vv~~~-~l~~~a~~~a 196 (259)
T TIGR01929 176 MGLVNTVVPLA-DLEKETVRWC 196 (259)
T ss_pred cCCcccccCHH-HHHHHHHHHH
Confidence 89999999754 4455555554
No 293
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=89.92 E-value=0.36 Score=58.67 Aligned_cols=87 Identities=21% Similarity=0.156 Sum_probs=58.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||.-++..||++|+.+++.+.+ . |...+-..+|... .-+.+.+.+.+ ...
T Consensus 93 ~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 171 (256)
T TIGR02280 93 PLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDART-AAS 171 (256)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 369999999999999999999999999999976542 1 1223444444431 11223344333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
-|++|.+++++ +..+.+.+|..-
T Consensus 172 ~Glv~~vv~~~-~l~~~a~~~a~~ 194 (256)
T TIGR02280 172 WGLIWQVVDDA-ALMDEAQALAVH 194 (256)
T ss_pred cCCcceeeChH-HHHHHHHHHHHH
Confidence 89999999754 555666665443
No 294
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=89.70 E-value=0.43 Score=58.58 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=49.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c---C-hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T---G-FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t---G-~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . | ..-+-..+|... .-+...+.+.+ ...
T Consensus 111 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~e-A~~ 189 (275)
T PLN02664 111 RKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSE-AKE 189 (275)
T ss_pred CCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHH-HHH
Confidence 369999999999999999999999999999876433 2 1 112334444321 11222232222 346
Q ss_pred cCceEEEecC
Q 000086 1844 NGVVHLTVSD 1853 (2304)
Q Consensus 1844 nGv~d~~v~d 1853 (2304)
-|++|.++++
T Consensus 190 ~GLv~~vv~~ 199 (275)
T PLN02664 190 LGLVSRVFGS 199 (275)
T ss_pred cCCCceeeCC
Confidence 8999999975
No 295
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=89.69 E-value=0.36 Score=58.68 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=54.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 94 ~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 172 (257)
T PRK05862 94 RKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAE-AER 172 (257)
T ss_pred CCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHH-HHH
Confidence 469999999999999999999999999998865432 2 2223444455421 11112222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|++|.+++++ +..+.+++|.
T Consensus 173 ~Glv~~vv~~~-~l~~~a~~~a 193 (257)
T PRK05862 173 AGLVSRVVPAD-KLLDEALAAA 193 (257)
T ss_pred cCCCCEeeCHh-HHHHHHHHHH
Confidence 89999999754 4444444444
No 296
>PLN02600 enoyl-CoA hydratase
Probab=89.63 E-value=0.41 Score=57.98 Aligned_cols=84 Identities=25% Similarity=0.250 Sum_probs=55.9
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-..+|... .-+...+.+.+ ...-
T Consensus 89 kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~e-A~~~ 167 (251)
T PLN02600 89 IPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGARE-AASM 167 (251)
T ss_pred CCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHH-HHHc
Confidence 69999999999999999999999999999876433 1 2233444555321 11233344333 3468
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~L 1865 (2304)
|++|.+++++ +..+..+++.
T Consensus 168 Glv~~vv~~~-~~~~~a~~~a 187 (251)
T PLN02600 168 GLVNYCVPAG-EAYEKALELA 187 (251)
T ss_pred CCCcEeeChh-HHHHHHHHHH
Confidence 9999999754 3444444443
No 297
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=89.62 E-value=0.37 Score=58.06 Aligned_cols=89 Identities=21% Similarity=0.148 Sum_probs=57.0
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecC-cc-------eEecCh----HHHHHhhccc-----ccccccccCcceee
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QP-------IILTGF----SALNKLLGRE-----VYSSHMQLGGPKIM 1841 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~-------i~ltG~----~al~~~lG~~-----vy~s~~~lGG~~i~ 1841 (2304)
..|+|+.|.|.|+|||..++..||++|+.++ +. +++..| ..+-..+|.. +.-+...+.+.+ .
T Consensus 94 ~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~e-A 172 (239)
T PLN02267 94 PMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEE-A 172 (239)
T ss_pred CCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHH-H
Confidence 3699999999999999999999999999754 33 334312 2233344422 111122233222 4
Q ss_pred cccCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1842 ATNGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1842 ~~nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
...|++|.+++++.+..+.++++..-+
T Consensus 173 ~~~Glv~~vv~~~~~l~~~a~~~A~~i 199 (239)
T PLN02267 173 VEMGIVDSAHDSAEETVEAAVRLGEEL 199 (239)
T ss_pred HHCCCcceecCCHHHHHHHHHHHHHHH
Confidence 479999999976556666666665443
No 298
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=89.54 E-value=0.39 Score=58.19 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=56.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++. +++. |...+-+.+|... .-+...+++.+ ...
T Consensus 97 ~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~e-A~~ 175 (251)
T PRK06023 97 EKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEA-AQE 175 (251)
T ss_pred CCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHH-HHH
Confidence 369999999999999999999999999998875 3332 1123444555321 11223344433 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.|++|.+++++ +..+.++++..
T Consensus 176 ~Glv~~vv~~~-~l~~~a~~~a~ 197 (251)
T PRK06023 176 AGLIWKIVDEE-AVEAETLKAAE 197 (251)
T ss_pred cCCcceeeCHH-HHHHHHHHHHH
Confidence 89999999754 34444454443
No 299
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=89.49 E-value=0.41 Score=58.47 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=57.8
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhccc----ccccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGRE----VYSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~----vy~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-+.+|.. +.-+...+.+.+- ..
T Consensus 103 ~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA-~~ 181 (266)
T PRK05981 103 PCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETA-LQ 181 (266)
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHH-HH
Confidence 46999999999999999999999999999987643 21 112233444432 2223344444443 36
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.|++|.+++++ +..+.+++|..
T Consensus 182 ~Glv~~vv~~~-~~~~~a~~~a~ 203 (266)
T PRK05981 182 WGLVNRVVDDA-ELMAEAMKLAH 203 (266)
T ss_pred cCCceEeeCHh-HHHHHHHHHHH
Confidence 89999999754 55666666654
No 300
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=89.48 E-value=0.44 Score=58.01 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=57.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 94 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~e-A~~ 172 (259)
T PRK06494 94 DKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTARE-GLE 172 (259)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHH-HHH
Confidence 469999999999999999999999999998876443 1 2223444445322 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.++++ .+..+.+++|..-+
T Consensus 173 ~GLv~~vv~~-~~l~~~a~~~a~~l 196 (259)
T PRK06494 173 LGFVNEVVPA-GELLAAAERWADDI 196 (259)
T ss_pred cCCCcEecCH-hHHHHHHHHHHHHH
Confidence 8999999975 44555555554433
No 301
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=89.46 E-value=0.39 Score=58.31 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=55.4
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-..+|... .-+.+.+.+.+ ....
T Consensus 93 kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e-A~~~ 171 (255)
T PRK09674 93 KPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQ-AQQA 171 (255)
T ss_pred CCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHH-HHHc
Confidence 6999999999999999999999999999987543 22 2223444455322 11223333333 3468
Q ss_pred CceEEEecCcHHHHHHHHHHHh
Q 000086 1845 GVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
|++|.+++++ +..+.+++|..
T Consensus 172 Glv~~vv~~~-~~~~~a~~~a~ 192 (255)
T PRK09674 172 GLVSEVFPPE-LTLERALQLAS 192 (255)
T ss_pred CCCcEecChH-HHHHHHHHHHH
Confidence 9999999754 33444444433
No 302
>PRK08788 enoyl-CoA hydratase; Validated
Probab=89.27 E-value=19 Score=44.97 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=58.3
Q ss_pred CccCHHHHHHHHHHHHHhhc------cCCCEEEEecC--CCCCCchhh-hh---------hhHHHHHHHHHHHHH-----
Q 000086 1979 QVWFPDSATKTAQALMDFNR------EELPLFILANW--RGFSGGQRD-LF---------EGILQAGSTIVENLR----- 2035 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~------~~lPLv~l~d~--~Gf~~G~~~-e~---------~gilk~ga~iv~al~----- 2035 (2304)
-++.++......++++.+.+ ..+-+|+|.-. ..|+.|..- +. ..+......+.+.+.
T Consensus 38 Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (287)
T PRK08788 38 PCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRG 117 (287)
T ss_pred CCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh
Confidence 47889999999999998865 45666777654 237777541 11 111122222333222
Q ss_pred -cCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2036 -TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2036 -~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.+.+|+|+.|- |.+.+||.-+++.+ |+ .+|.++++++.
T Consensus 118 ~~~pkPvIAaV~-G~a~GgG~~Lalac----D~--ria~~~a~f~~ 156 (287)
T PRK08788 118 FGAGAISIALVQ-GDALGGGFEAALSH----HT--IIAERGAKMGF 156 (287)
T ss_pred cCCCCCEEEEEC-CeeehHHHHHHHhC----CE--EEecCCCEeeC
Confidence 67899999998 34445555555553 66 77777777665
No 303
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=89.27 E-value=0.4 Score=58.21 Aligned_cols=88 Identities=20% Similarity=0.147 Sum_probs=57.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |..-+.+.+|... .-+...+.+.+ ...
T Consensus 96 ~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~e-A~~ 174 (259)
T PRK06688 96 PKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEE-ALR 174 (259)
T ss_pred CCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHH-HHH
Confidence 369999999999999999999999999998876443 1 1222444444321 11122223222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.++++ .+..+.+.+|..-+
T Consensus 175 ~Glv~~v~~~-~~l~~~a~~~a~~i 198 (259)
T PRK06688 175 IGLVNRVVPA-AELDAEADAQAAKL 198 (259)
T ss_pred cCCcceecCH-HHHHHHHHHHHHHH
Confidence 8999999974 45556666665443
No 304
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=89.18 E-value=1.4 Score=55.34 Aligned_cols=172 Identities=17% Similarity=0.115 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhccc
Q 000086 1982 FPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS 2061 (2304)
Q Consensus 1982 ~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~ 2061 (2304)
+.+...+..+.++.. ..--+|+...||||-++.... ..++.+..+..-+ |+++++. +=.+-||-|+++..
T Consensus 81 ~~~~~~~~l~~~~~~-~~vk~vvL~inSPGG~v~as~-------~i~~~l~~l~~~~-PV~v~v~-~~AASGGY~IA~aA 150 (317)
T COG0616 81 GGDDIEEILRAARAD-PSVKAVVLRINSPGGSVVASE-------LIARALKRLRAKK-PVVVSVG-GYAASGGYYIALAA 150 (317)
T ss_pred cHHHHHHHHHHHhcC-CCCceEEEEEECcCCchhHHH-------HHHHHHHHHhhcC-CEEEEEC-CeecchhhhhhccC
Confidence 344444444444433 245689999999994443221 2456666677777 9999888 45667777777764
Q ss_pred ccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHH----HHHHhhccCCHHHHHHHHHHHHHHH
Q 000086 2062 RINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMA----KLQEAKNNRTLAMVESLQQQIKARE 2137 (2304)
Q Consensus 2062 ~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~----~l~~~~~~~~~~~~~~~~~~~~~re 2137 (2304)
|. +||+|+|.+|-+|+-.. .....+.|.+++......+. ...+.-.++++++++.+++.+.+..
T Consensus 151 ----d~--I~a~p~si~GSIGVi~~------~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y 218 (317)
T COG0616 151 ----DK--IVADPSSITGSIGVISG------APNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETY 218 (317)
T ss_pred ----CE--EEecCCceeeeceeEEe------cCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHH
Confidence 65 89999999999888554 22333444444321111000 0001113456677776666555442
Q ss_pred Hhh---------cchhhHHHHHhhhhcccHHHHHHcCCcceecCccch
Q 000086 2138 KQL---------LPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKS 2176 (2304)
Q Consensus 2138 ~~l---------~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~t 2176 (2304)
++. ++.+. +-.-+...|-+.....+.|.||++-.-.+.
T Consensus 219 ~~F~~~V~~~R~~~~~~-~~~~a~g~v~~g~~A~~~gLVDelg~~~~a 265 (317)
T COG0616 219 DEFVDKVAEGRGLSDEA-VDKLATGRVWTGQQALELGLVDELGGLDDA 265 (317)
T ss_pred HHHHHHHHhcCCCChhH-HHHHhccceecHHHhhhcCCchhcCCHHHH
Confidence 211 11221 223333356667777788888877654443
No 305
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=89.17 E-value=0.5 Score=57.61 Aligned_cols=86 Identities=16% Similarity=0.032 Sum_probs=57.1
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhccc----ccccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGRE----VYSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~----vy~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+-+.+|.. +.-+.+.+.+.+ ...
T Consensus 94 ~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~e-A~~ 172 (258)
T PRK06190 94 RKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAAD-ALR 172 (258)
T ss_pred CCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHH-HHH
Confidence 369999999999999999999999999998876432 1 122244445532 212233344433 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.|++|.+++++ +..+.+++|..
T Consensus 173 ~GLv~~vv~~~-~l~~~a~~~a~ 194 (258)
T PRK06190 173 AGLVTEVVPHD-ELLPRARRLAA 194 (258)
T ss_pred cCCCeEecCHh-HHHHHHHHHHH
Confidence 99999999744 44555555543
No 306
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=89.15 E-value=5.4 Score=48.74 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=61.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhhh--------hhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF--------EGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e~--------~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
.++.++-.....++++.++. ..+-+|+|.-.. .|+.|.+-.. .........++.++..+.+|+|+.|-
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~- 102 (261)
T PRK03580 24 NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVN- 102 (261)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEEC-
Confidence 47888999999999998865 567778887654 3887764221 01111123456788899999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++. .|+ ++|.++++++.
T Consensus 103 G~a~GgG~~lala----cD~--~ia~~~a~f~~ 129 (261)
T PRK03580 103 GYAFGGGFELALA----ADF--IVCADNASFAL 129 (261)
T ss_pred CeeehHHHHHHHH----CCE--EEecCCCEEeC
Confidence 3344445444444 366 66777666655
No 307
>PLN02921 naphthoate synthase
Probab=89.05 E-value=0.53 Score=59.27 Aligned_cols=86 Identities=22% Similarity=0.220 Sum_probs=57.1
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+-+.+|... .-+..-+.+.+ ...
T Consensus 161 ~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~e-A~~ 239 (327)
T PLN02921 161 PKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASE-ALK 239 (327)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHH-HHH
Confidence 3699999999999999999999999999999766542 2223445555322 11122222222 236
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.+++++ +....+.+|..
T Consensus 240 ~GLV~~vv~~~-~l~~~a~~~a~ 261 (327)
T PLN02921 240 MGLVNTVVPLD-ELEGETVKWCR 261 (327)
T ss_pred CCCceEEeCHH-HHHHHHHHHHH
Confidence 89999999753 45555555543
No 308
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=89.04 E-value=0.83 Score=61.77 Aligned_cols=103 Identities=14% Similarity=0.157 Sum_probs=60.0
Q ss_pred ceeeeEeecCeEEEEEEEeeCCCeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecccceEEEEeCceeccccC
Q 000086 605 NSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQND 684 (2304)
Q Consensus 605 ~~~vel~~~g~~y~v~v~~~~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~ 684 (2304)
.+.+.|.+||+...+.+.......-.. .........+...+.|+...+.+.+ +-.+.-+..-+.++..
T Consensus 489 ~r~~~~~~ng~~~~v~v~d~~~~~~~~---------~~~~~~~~~V~Ap~~G~v~~~~V~~---Gd~V~~Gq~L~~ieam 556 (592)
T PRK09282 489 KRPFYLRVDGMPEEVVVEPLKEIVVGG---------RPRASAPGAVTSPMPGTVVKVKVKE---GDKVKAGDTVLVLEAM 556 (592)
T ss_pred cceEEEEecCceeeeeccCcccccccc---------cCCCCCCceEeCCCcEEEEEEEeCC---CCEECCCCEEEEEecc
Confidence 456677788888888775433211000 0001111223334455544444332 1122222222223333
Q ss_pred CCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 685 ~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
.-.+.|+||.+|+|.++.|++||.|..||+|++||
T Consensus 557 Kme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 557 KMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred ccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 34578999999999999999999999999999986
No 309
>PRK08321 naphthoate synthase; Validated
Probab=89.02 E-value=0.52 Score=58.75 Aligned_cols=86 Identities=17% Similarity=0.180 Sum_probs=56.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEe-cCcceEec-----------ChHHHHHhhccccc----ccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQR-LDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~-~~~~i~lt-----------G~~al~~~lG~~vy----~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+. +++.+.+. |...+.+.+|.... -+.+.+.+.+ ..
T Consensus 135 pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~e-A~ 213 (302)
T PRK08321 135 PKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEE-AH 213 (302)
T ss_pred CCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHH-HH
Confidence 36999999999999999999999999998 57654432 22235555564321 1222333333 24
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.-|++|.++++ .+..+.+.+|..
T Consensus 214 ~~GLv~~vv~~-~~l~~~a~~~a~ 236 (302)
T PRK08321 214 DMGAVNAVVPH-AELETEALEWAR 236 (302)
T ss_pred HCCCceEeeCH-HHHHHHHHHHHH
Confidence 79999999975 445555555543
No 310
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=89.01 E-value=0.5 Score=57.38 Aligned_cols=85 Identities=16% Similarity=0.114 Sum_probs=55.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 91 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~e-A~~ 169 (254)
T PRK08252 91 RKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAER-AHE 169 (254)
T ss_pred CCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHH-HHH
Confidence 369999999999999999999999999999875432 2 1222333444322 11223333333 347
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|++|.+++++ +..+.+.++.
T Consensus 170 ~Glv~~vv~~~-~l~~~a~~~a 190 (254)
T PRK08252 170 LGLVNRLTEPG-QALDAALELA 190 (254)
T ss_pred cCCcceecCcc-hHHHHHHHHH
Confidence 89999999754 4444444444
No 311
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=88.98 E-value=0.52 Score=56.81 Aligned_cols=81 Identities=19% Similarity=0.204 Sum_probs=58.5
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChH---------------------HHHH-hhcccccccccccCc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS---------------------ALNK-LLGREVYSSHMQLGG 1837 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~---------------------al~~-~lG~~vy~s~~~lGG 1837 (2304)
-|.|+.+-|-++|||.-|+.+||++||.+++.+++..++ |++- ++|+.+ |
T Consensus 128 KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~--------~ 199 (290)
T KOG1680|consen 128 KPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRL--------G 199 (290)
T ss_pred cceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcc--------c
Confidence 499999999999999999999999999999998887763 2222 122322 1
Q ss_pred ceeecccCceEEEecCcHHHHHHHHHHHhcCC
Q 000086 1838 PKIMATNGVVHLTVSDDLEGISAILKWLSYVP 1869 (2304)
Q Consensus 1838 ~~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP 1869 (2304)
++--.+-|++..|++. .+++....+|..-+-
T Consensus 200 AqeA~~~GlVn~Vvp~-~~~l~eAv~l~~~Ia 230 (290)
T KOG1680|consen 200 AQEAKKIGLVNKVVPS-GDALGEAVKLAEQIA 230 (290)
T ss_pred HHHHHhCCceeEeecc-hhHHHHHHHHHHHHH
Confidence 2222368999999975 446666667665443
No 312
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=88.94 E-value=7.5 Score=47.40 Aligned_cols=93 Identities=12% Similarity=0.080 Sum_probs=62.9
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhh-hh--------hhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRD-LF--------EGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~-e~--------~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
..++++......++++.++ ..+-+|+|.-.. .|+.|.+- +. ....+....++.++..+..|+|+.|-
T Consensus 24 Nal~~~~~~~l~~al~~~~-~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~-- 100 (255)
T PRK08150 24 NALNDGLIAALRAAFARLP-EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALH-- 100 (255)
T ss_pred cCCCHHHHHHHHHHHHHhh-cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 4788999999999999887 666677775532 47777641 11 11123345567788899999999998
Q ss_pred CcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2049 AELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2049 ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.| |.-+++. .|+ ++|.++++++.
T Consensus 101 G~a~GgG~~lala----cD~--~ia~~~a~f~~ 127 (255)
T PRK08150 101 GAVVGGGLELASA----AHI--RVADESTYFAL 127 (255)
T ss_pred CEEEcHHHHHHHh----CCE--EEEeCCCEEec
Confidence 55555 4444444 366 77777777765
No 313
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=88.84 E-value=0.49 Score=57.59 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=55.5
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhccc----ccccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGRE----VYSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~----vy~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+...+|.. +.-+...+.+.+ ...-
T Consensus 96 kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~e-A~~~ 174 (258)
T PRK09076 96 GVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAAT-ALRI 174 (258)
T ss_pred CCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHH-HHHC
Confidence 69999999999999999999999999998876443 2 222355555532 111223343333 3468
Q ss_pred CceEEEecCcHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~ 1864 (2304)
|++|.+++++ +..+.+.++
T Consensus 175 Glv~~vv~~~-~l~~~a~~~ 193 (258)
T PRK09076 175 GLVEEVVEKG-EAREAALAL 193 (258)
T ss_pred CCCceecCch-hHHHHHHHH
Confidence 9999999754 444444444
No 314
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=88.81 E-value=0.44 Score=58.20 Aligned_cols=85 Identities=20% Similarity=0.191 Sum_probs=56.1
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhccc----ccccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGRE----VYSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~----vy~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-+.+|.. +.-+.+.+.+.+ ...
T Consensus 103 ~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 181 (266)
T PRK09245 103 EVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAAT-ALE 181 (266)
T ss_pred CCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHH-HHH
Confidence 36999999999999999999999999999986543 32 222344444542 111223333322 447
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.+++|.
T Consensus 182 ~Glv~~vv~~~-~l~~~a~~~a 202 (266)
T PRK09245 182 WGLVSRVVPAD-QLLPAARALA 202 (266)
T ss_pred cCCcceecCHH-HHHHHHHHHH
Confidence 99999999754 4445555544
No 315
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=88.80 E-value=0.4 Score=58.38 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=55.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.++|||..++..||++|+.+++.+.+ . |...+...+|... .-+...+.+.+ ...
T Consensus 102 ~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~e-A~~ 180 (262)
T PRK07509 102 PVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEE-ALE 180 (262)
T ss_pred CCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 469999999999999999999999999999975433 1 2223444445432 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|++|.++++..+....+.+-|
T Consensus 181 ~Glv~~vv~~~~~~a~~~a~~l 202 (262)
T PRK07509 181 LGLVTHVSDDPLAAALALAREI 202 (262)
T ss_pred cCChhhhhchHHHHHHHHHHHH
Confidence 9999999865444333333333
No 316
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.78 E-value=1.2 Score=54.76 Aligned_cols=209 Identities=17% Similarity=0.114 Sum_probs=122.5
Q ss_pred HHcCCCEEEeCCCcCC--CCCchH---HHHHHCCCeEECCCHHHHHHhcCHHHHHH----HHHHCC---CCcCCCCCCCc
Q 000086 128 EMTRVDAVWPGWGHAS--EIPELP---DTLSTKGIIFLGPPATSMAALGDKIGSSL----IAQAAN---VPTLPWSGSHV 195 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~S--En~~la---~~l~~~GI~fiGPs~eam~~lgDK~~sr~----laq~aG---VPtpp~s~~~~ 195 (2304)
+....|+|+.+-+-.+ +|.++. ..+...||+++ ++...+-..-||-+... +..+.| +|..+-..
T Consensus 152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~--- 227 (488)
T KOG3895|consen 152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTF--- 227 (488)
T ss_pred eeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceeee---
Confidence 5567888887754322 333443 45566899998 77777777777765543 334455 44433211
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000086 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2304)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEe 275 (2304)
|. +. .+....-.||||||--.+-.|.|-.+|+|-+||.+.-.-+.-. ....-+|.
T Consensus 228 ---------------yP----nH----K~m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svval~--~Tyat~ep 282 (488)
T KOG3895|consen 228 ---------------YP----NH----KEMLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVALT--KTYATAEP 282 (488)
T ss_pred ---------------cC----Cc----hhhccCCCCcEEEEecccccccceeeecchhhhHhHHHHHHHH--hhhhhccc
Confidence 10 00 1122234599999999999999999999999887644332211 12346778
Q ss_pred eccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCH-HHHHHHHHHHHHHHHHCCceeeeEEEEEEEc
Q 000086 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPL-ETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2304)
Q Consensus 276 yI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~-e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~ 354 (2304)
||+..-.+.||-++..|...+-- ++- .|.|.-. .+..+.. ..-++-......+.+.+|---++.|+.+..
T Consensus 283 FiDaKYDiriQKIG~nYKaymRt-----sIs-gnWKtNt--GSamLEQIamseRyklwvdtcse~fGgldICav~alhs- 353 (488)
T KOG3895|consen 283 FIDAKYDIRIQKIGHNYKAYMRT-----SIS-GNWKTNT--GSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHS- 353 (488)
T ss_pred cccccceeehhhhhhhHHHHhhh-----hhc-cCcccCc--hHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeec-
Confidence 88765677777777654322110 010 1212111 1110100 111223334555777888888899999998
Q ss_pred cCCcEEEEEeccC---CCCCcce
Q 000086 355 ETGEYYFLELNPR---LQVEHPV 374 (2304)
Q Consensus 355 ~~g~~yfLEINpR---lqgehpv 374 (2304)
++|+=|++|+|-- +=|||..
T Consensus 354 KdGrd~i~eV~d~smpliGeh~e 376 (488)
T KOG3895|consen 354 KDGRDYIIEVMDSSMPLIGEHQE 376 (488)
T ss_pred ccchhheeeeccccccccccchh
Confidence 6899999999973 3466643
No 317
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=88.75 E-value=0.49 Score=57.43 Aligned_cols=75 Identities=21% Similarity=0.195 Sum_probs=50.1
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEecC---hHHHHHhhcccc----cccccccCcceeecccC
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTG---FSALNKLLGREV----YSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~ltG---~~al~~~lG~~v----y~s~~~lGG~~i~~~nG 1845 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++. +++.. ...+-+.+|... .-+.+.+.+.+ ...-|
T Consensus 90 kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~ltg~~~~a~e-A~~~G 168 (251)
T TIGR03189 90 VPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAASCLLPERMGRVAAEDLLYSGRSIDGAE-GARIG 168 (251)
T ss_pred CCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHHCC
Confidence 69999999999999999999999999999865 44431 122333344321 11222233332 34699
Q ss_pred ceEEEecCcH
Q 000086 1846 VVHLTVSDDL 1855 (2304)
Q Consensus 1846 v~d~~v~dd~ 1855 (2304)
++|.++++++
T Consensus 169 lv~~v~~~~~ 178 (251)
T TIGR03189 169 LANAVAEDPE 178 (251)
T ss_pred CcceecCcHH
Confidence 9999997644
No 318
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=88.71 E-value=0.53 Score=57.27 Aligned_cols=86 Identities=17% Similarity=0.117 Sum_probs=56.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec----------ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT----------GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+-+.+|... .-+.+.+.+.+ ...-
T Consensus 100 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~e-A~~~ 178 (256)
T PRK06143 100 PVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGIPSVIHAALLPRLIGWARTRWLLLTGETIDAAQ-ALAW 178 (256)
T ss_pred CCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHH-HHHC
Confidence 3699999999999999999999999999988754321 1123444445321 11223333333 3468
Q ss_pred CceEEEecCcHHHHHHHHHHHh
Q 000086 1845 GVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
|++|.++++ .+..+.+.+|..
T Consensus 179 Glv~~vv~~-~~l~~~a~~~a~ 199 (256)
T PRK06143 179 GLVDRVVPL-AELDAAVERLAA 199 (256)
T ss_pred CCcCeecCH-HHHHHHHHHHHH
Confidence 999999975 444555555543
No 319
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=88.71 E-value=0.58 Score=57.09 Aligned_cols=85 Identities=20% Similarity=0.089 Sum_probs=56.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh------------HHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF------------SALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~------------~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-. .-+-+.+|... .-+...+.+.+ ..
T Consensus 102 ~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~ 180 (262)
T PRK06144 102 RVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEE-AL 180 (262)
T ss_pred CCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HH
Confidence 369999999999999999999999999999977654321 12334445321 11223333333 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHH
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.-|++|.++++ .+..+.+.+|.
T Consensus 181 ~~Glv~~vv~~-~~l~~~a~~~a 202 (262)
T PRK06144 181 AAGLVNEVVED-AALDARADALA 202 (262)
T ss_pred HcCCcCeecCH-HHHHHHHHHHH
Confidence 68999999975 44444444444
No 320
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=88.68 E-value=0.56 Score=57.06 Aligned_cols=86 Identities=15% Similarity=0.160 Sum_probs=57.2
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhccc----ccccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGRE----VYSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~----vy~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+-+.+|.. +.-+.+.+.+.+ ...-
T Consensus 93 kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~e-A~~~ 171 (255)
T PRK08150 93 VPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQE-GERL 171 (255)
T ss_pred CCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHH-HHHc
Confidence 699999999999999999999999999998764332 122344444432 111223333322 4479
Q ss_pred CceEEEecCcHHHHHHHHHHHhc
Q 000086 1845 GVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
|++|.+++++ +..+.+++|..-
T Consensus 172 Glv~~vv~~~-~l~~~a~~~a~~ 193 (255)
T PRK08150 172 GLAQYLVPAG-EALDKAMELARR 193 (255)
T ss_pred CCccEeeCch-HHHHHHHHHHHH
Confidence 9999999754 455656665443
No 321
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=88.68 E-value=0.49 Score=53.41 Aligned_cols=41 Identities=17% Similarity=0.368 Sum_probs=34.4
Q ss_pred eccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 679 ~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
|.++...-...|+||..|+|+++++++|+.|+.||+|+.|+
T Consensus 115 ~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 115 CIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 33344444568999999999999999999999999999985
No 322
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=88.68 E-value=19 Score=43.56 Aligned_cols=95 Identities=13% Similarity=0.072 Sum_probs=64.2
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhhh----hhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDL----FEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2053 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~e----~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G 2053 (2304)
..++++......++++.++...+-+|+|.-.. .|+.|.+-. ..........++..+..+..|+|..|- |...+|
T Consensus 22 Nal~~~~~~~l~~al~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~-G~a~Gg 100 (243)
T PRK07854 22 NALNAELCEELREAVRKAVDESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAIN-GPAIGA 100 (243)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEec-Cccccc
Confidence 57889999999999998876677777775432 377775421 112233345677888899999999998 344445
Q ss_pred hhhhhcccccCCccceeecccCcEEEe
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|..+++. .|+ ++|.++++++.
T Consensus 101 G~~lal~----cD~--~ia~~~a~f~~ 121 (243)
T PRK07854 101 GLQLAMA----CDL--RVVAPEAYFQF 121 (243)
T ss_pred HHHHHHh----CCE--EEEcCCCEEec
Confidence 5555554 366 77777777764
No 323
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=88.63 E-value=5.9 Score=48.40 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=64.2
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCCC--CCCchhh-h--------hhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG--FSGGQRD-L--------FEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~G--f~~G~~~-e--------~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
.+++.+-.....++++.+.+ ..+-+|+|.-..+ |+.|..= + .....+....++.++..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK07657 26 NALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN 105 (260)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 57888999999999998865 5677888877663 8877541 1 112223345678889999999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++.+ |+ ++|.++++++.
T Consensus 106 -G~a~GgG~~lal~c----D~--~ia~~~a~f~~ 132 (260)
T PRK07657 106 -GIALGGGLELALAC----DF--RIAAESASLGL 132 (260)
T ss_pred -CEeechHHHHHHhC----CE--EEeeCCCEEcC
Confidence 34444455555543 65 66666665554
No 324
>PRK08139 enoyl-CoA hydratase; Validated
Probab=88.61 E-value=0.67 Score=56.73 Aligned_cols=84 Identities=15% Similarity=0.078 Sum_probs=54.3
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcce-------Eec---ChHHHHHhhcccc----cccccccCcceeecccC
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT---GFSALNKLLGREV----YSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i-------~lt---G~~al~~~lG~~v----y~s~~~lGG~~i~~~nG 1845 (2304)
.|+|+.|.|+|+|||..++..||++|+.+++.+ ++. |...+-+.+|... .-+...+. ++=...-|
T Consensus 105 kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~l~r~vG~~~A~~l~ltg~~~~-a~eA~~~G 183 (266)
T PRK08139 105 QPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTPMVALSRNVPRKQAMEMLLTGEFID-AATAREWG 183 (266)
T ss_pred CCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCccHHHHHHHhCHHHHHHHHHcCCccC-HHHHHHcC
Confidence 699999999999999999999999999998653 332 1112333344321 11222332 22245799
Q ss_pred ceEEEecCcHHHHHHHHHHH
Q 000086 1846 VVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~L 1865 (2304)
++|.+++++ +..+.+.+|.
T Consensus 184 Lv~~vv~~~-~l~~~a~~~a 202 (266)
T PRK08139 184 LVNRVVPAD-ALDAAVARLA 202 (266)
T ss_pred CccEeeChh-HHHHHHHHHH
Confidence 999999754 4444454544
No 325
>PLN02600 enoyl-CoA hydratase
Probab=88.54 E-value=9.4 Score=46.43 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=63.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhh---------hhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
.++.++-..-..++++.++. ..+-+|+|.-.. .|+.|..-. ..........++..+..+..|+|+.|-
T Consensus 17 Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 96 (251)
T PLN02600 17 NAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVE 96 (251)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 47889999999999988765 467788886543 377775311 111222234567778899999999998
Q ss_pred CCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.| |.-+++. .|+ ++|.++++++.
T Consensus 97 --G~a~GgG~~lala----~D~--~ia~~~a~f~~ 123 (251)
T PLN02600 97 --GAALGGGLELALS----CDL--RICGEEAVFGL 123 (251)
T ss_pred --CeecchhHHHHHh----CCE--EEeeCCCEEeC
Confidence 55555 5444544 477 78888887776
No 326
>PLN02888 enoyl-CoA hydratase
Probab=88.53 E-value=0.53 Score=57.56 Aligned_cols=88 Identities=15% Similarity=0.108 Sum_probs=58.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhccccc----ccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~vy----~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+++. |...+.+.+|.... -+.+.+.+ +=...
T Consensus 99 ~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a-~eA~~ 177 (265)
T PLN02888 99 RKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTA-ETAER 177 (265)
T ss_pred CCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCH-HHHHH
Confidence 3699999999999999999999999999988764331 22335555554321 01122222 22347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.+++++ +..+.+.+|..-+
T Consensus 178 ~Glv~~vv~~~-~l~~~a~~~a~~l 201 (265)
T PLN02888 178 WGLVNHVVEES-ELLKKAREVAEAI 201 (265)
T ss_pred cCCccEeeChH-HHHHHHHHHHHHH
Confidence 99999999754 4555666655433
No 327
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=88.46 E-value=0.43 Score=58.68 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=56.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcce-------Eec----C-hHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----G-FSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i-------~lt----G-~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+ ++. | ...+-+.+|... .-+.+.+.+.+ ..
T Consensus 109 ~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~e-A~ 187 (276)
T PRK05864 109 HQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEE-AE 187 (276)
T ss_pred CCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHH-HH
Confidence 3699999999999999999999999999988643 333 1 122455555322 11223333332 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.-|++|.+++++ +..+.+.+|..
T Consensus 188 ~~Glv~~vv~~~-~l~~~a~~~a~ 210 (276)
T PRK05864 188 RIGLVSRQVPDE-QLLDTCYAIAA 210 (276)
T ss_pred HcCCcceeeCHH-HHHHHHHHHHH
Confidence 689999999754 45555555543
No 328
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=88.35 E-value=15 Score=45.32 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=63.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh--------------------hhHHHHHHHHHHHHH
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--------------------EGILQAGSTIVENLR 2035 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~--------------------~gilk~ga~iv~al~ 2035 (2304)
...++++......++++.++. ..+-+|+|.-.. .|+.|..-.. ....+....++.++.
T Consensus 29 ~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 108 (275)
T PLN02664 29 RNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIE 108 (275)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999998875 567777776543 3777763210 011223345677889
Q ss_pred cCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2036 TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2036 ~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.+.+|+|+.|- |-..+||.-+++. .|+ .+|.++++++.
T Consensus 109 ~~~kPvIaav~-G~a~GgG~~lal~----cD~--~ia~~~a~f~~ 146 (275)
T PLN02664 109 QCRKPVIAAIH-GACIGGGVDIVTA----CDI--RYCSEDAFFSV 146 (275)
T ss_pred hCCCCEEEEEC-CccccchHHHHHh----CCE--EEecCCCEecc
Confidence 99999999998 3444555555554 366 77777777655
No 329
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=88.33 E-value=0.51 Score=57.45 Aligned_cols=86 Identities=15% Similarity=0.113 Sum_probs=56.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 97 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 175 (260)
T PRK07657 97 PQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQE-AKE 175 (260)
T ss_pred CCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHH-HHH
Confidence 46999999999999999999999999999886533 22 1223444455321 11222333333 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.++++ .+..+.+++|..
T Consensus 176 ~Glv~~vv~~-~~l~~~a~~~a~ 197 (260)
T PRK07657 176 IGLVEFVVPA-HLLEEKAIEIAE 197 (260)
T ss_pred cCCCCeecCH-HHHHHHHHHHHH
Confidence 8999999975 445555555544
No 330
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=88.29 E-value=0.5 Score=57.43 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=56.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++-.||++|+.+++.+.+. |...+-+.+|... .-+...+.+.+ ...
T Consensus 93 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~e-A~~ 171 (254)
T PRK08259 93 SKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADE-ALA 171 (254)
T ss_pred CCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHH-HHH
Confidence 3699999999999999999999999999998754331 2222444455432 11122233222 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.|++|.+++++ +..+.+++|..
T Consensus 172 ~Glv~~vv~~~-~l~~~a~~~a~ 193 (254)
T PRK08259 172 IGLANRVVPKG-QARAAAEELAA 193 (254)
T ss_pred cCCCCEeeChh-HHHHHHHHHHH
Confidence 99999999754 45555555543
No 331
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=88.23 E-value=0.47 Score=57.74 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=53.3
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcc---cccccccccCcceeecccC
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGR---EVYSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~---~vy~s~~~lGG~~i~~~nG 1845 (2304)
.|+|+.|.|.|+|||..++-.||++|+.+++.+.+. |...+.++.|. +..-+...+. ++-....|
T Consensus 102 kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~l~l~g~~~~-a~eA~~~G 180 (260)
T PRK07827 102 KPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAARYYLTGEKFG-AAEAARIG 180 (260)
T ss_pred CCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHHHHHHhCCccC-HHHHHHcC
Confidence 699999999999999999999999999988764432 11122222221 1111222232 22244689
Q ss_pred ceEEEecCcHHHHHHHHHHHh
Q 000086 1846 VVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
++|.++++..+....+.+-+.
T Consensus 181 lv~~v~~~l~~~a~~~a~~la 201 (260)
T PRK07827 181 LVTAAADDVDAAVAALLADLR 201 (260)
T ss_pred CcccchHHHHHHHHHHHHHHH
Confidence 999988654444444444443
No 332
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=88.18 E-value=24 Score=43.68 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=63.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC---CCCCchhhh--h---------hhHHHHHHHHHHHHHcCCCCEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR---GFSGGQRDL--F---------EGILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~---Gf~~G~~~e--~---------~gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
..++.+......++++.++. ..+=+|+|.-.. .|+.|.+-. . ....+....++..+..+.+|+|+
T Consensus 33 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 112 (278)
T PLN03214 33 NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVC 112 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 47889999999999998876 456677776653 388886411 0 01111123466788899999999
Q ss_pred EEcCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2044 YIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2044 ~I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.|- |-+.| |.-+++. .|+ ++|.++++++.
T Consensus 113 aV~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 142 (278)
T PLN03214 113 AIR--GACPAGGCAVSLC----CDY--RLQTTEGTMGL 142 (278)
T ss_pred EEc--CcccchHHHHHHh----CCE--EEecCCCEecC
Confidence 998 55555 4444443 477 78888887776
No 333
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=88.12 E-value=0.62 Score=57.06 Aligned_cols=86 Identities=23% Similarity=0.217 Sum_probs=55.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 106 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 184 (268)
T PRK07327 106 DKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEE-AER 184 (268)
T ss_pred CCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHH-HHH
Confidence 36999999999999999999999999999887643 32 1122334444321 11122233333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.++++ .+..+.++++..
T Consensus 185 ~Glv~~vv~~-~~l~~~a~~~a~ 206 (268)
T PRK07327 185 IGLVSLAVDD-DELLPKALEVAE 206 (268)
T ss_pred cCCcceecCH-HHHHHHHHHHHH
Confidence 8999999975 445555555543
No 334
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=88.09 E-value=0.6 Score=52.79 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=34.7
Q ss_pred eccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 679 ~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
|.++...-...|.||..|+|.+++|++||.|+.||+|++||
T Consensus 116 ~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 116 CIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 33444444578999999999999999999999999999985
No 335
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=87.95 E-value=28 Score=42.53 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=64.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh-----------hhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-----------EGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~-----------~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
.+++++......++++.+++ ..+-+|+|.-.. .|+.|..-.. ....+....++.++..+..|+|+.|
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 104 (257)
T PRK06495 25 NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAV 104 (257)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 47889999999999998865 456677776543 2766643210 1111233456788999999999999
Q ss_pred cCCCcCCchhhhhcccccCCccceeecccCcEEEeeCc
Q 000086 2046 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2046 ~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
- |...+||.-+++. .|+ ++|.++++++.-+.
T Consensus 105 ~-G~a~GgG~~lala----cD~--~ia~~~a~f~~pe~ 135 (257)
T PRK06495 105 N-GPALGAGLGLVAS----CDI--IVASENAVFGLPEI 135 (257)
T ss_pred C-CeeehhHHHHHHh----CCE--EEecCCCEeeChhh
Confidence 8 3444445555554 366 78888887776433
No 336
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=87.90 E-value=22 Score=45.37 Aligned_cols=95 Identities=13% Similarity=0.190 Sum_probs=61.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhhh--h-----------hHHHHHHHHHHHHHcCCCCEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF--E-----------GILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e~--~-----------gilk~ga~iv~al~~~~vP~i 2042 (2304)
.++.+.-.....++++.+++ ..+-+|+|.-.. .|+.|..-.. . ..++....++..+..+++|+|
T Consensus 25 Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 104 (342)
T PRK05617 25 NALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYI 104 (342)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 57888999999999988876 456777777654 3777764211 0 111222346677889999999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.|- |...+||.-+++. .|+ .+|.++|+++.
T Consensus 105 AaVn-G~a~GgG~~Lala----cD~--ria~~~a~f~~ 135 (342)
T PRK05617 105 ALMD-GIVMGGGVGISAH----GSH--RIVTERTKMAM 135 (342)
T ss_pred EEEc-CEEEccHhHHhhh----CCE--EEEcCCCEeeC
Confidence 9998 3444445555544 355 66666655554
No 337
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=87.87 E-value=0.6 Score=57.41 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=57.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEecC-----hHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTG-----FSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~ltG-----~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++. +++.. ...+-+.+|... .-+.+.+.+.+ ..
T Consensus 113 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~ 191 (277)
T PRK08258 113 PQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEE-GE 191 (277)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HH
Confidence 369999999999999999999999999998865 34431 123445555321 11222333322 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHHhc
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
.-|++|.++++ .+..+.+.+|..-
T Consensus 192 ~~Glv~~vv~~-~~l~~~a~~~a~~ 215 (277)
T PRK08258 192 RWGFFNRLVEP-EELLAEAQALARR 215 (277)
T ss_pred HcCCCcEecCH-HHHHHHHHHHHHH
Confidence 79999999974 4556666666543
No 338
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=87.79 E-value=0.83 Score=55.58 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=55.1
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |..-+-+.+|... .-+...+.+.+ ...-
T Consensus 95 kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~e-A~~~ 173 (256)
T TIGR03210 95 KPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQE-ALAM 173 (256)
T ss_pred CCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHH-HHHc
Confidence 69999999999999999999999999999866443 2 2223444455432 11122233322 3468
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~L 1865 (2304)
|++|.+++++ +..+.+.++.
T Consensus 174 Glv~~vv~~~-~l~~~a~~~a 193 (256)
T TIGR03210 174 GLVNAVVPHD-QLDAEVQKWC 193 (256)
T ss_pred CCceeeeCHH-HHHHHHHHHH
Confidence 9999999754 4444444443
No 339
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=87.79 E-value=0.48 Score=57.76 Aligned_cols=85 Identities=13% Similarity=0.095 Sum_probs=54.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-+.+|... .-+...+.+.+ ...
T Consensus 96 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~e-A~~ 174 (261)
T PRK11423 96 PKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQR-ALA 174 (261)
T ss_pred CCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHH-HHH
Confidence 369999999999999999999999999999876433 2 2222333344321 11112223222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|++|.+++++ +....++++.
T Consensus 175 ~GLv~~vv~~~-~l~~~a~~~a 195 (261)
T PRK11423 175 VGILNHVVEVE-ELEDFTLQMA 195 (261)
T ss_pred cCCcCcccCHH-HHHHHHHHHH
Confidence 89999999754 4444444443
No 340
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=87.73 E-value=11 Score=45.96 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=62.6
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh------------hhhHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL------------FEGILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e------------~~gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
.++++.-.....++++.+++ ..+-+|+|.-. ..|+.|..=. ..........++..+..+.+|+|+.
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAa 104 (260)
T PRK07511 25 NALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAA 104 (260)
T ss_pred cCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 47888999999999999875 45666666543 2377776311 0112233456777888999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |...+||..+++.+ |+ ++|.++|+++.
T Consensus 105 v~-G~a~GgG~~lala~----D~--~ia~~~a~f~~ 133 (260)
T PRK07511 105 VE-GAAAGAGFSLALAC----DL--LVAARDAKFVM 133 (260)
T ss_pred EC-CeeehHHHHHHHhC----CE--EEeeCCCEEec
Confidence 98 34445566555553 66 67777766665
No 341
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=87.72 E-value=0.89 Score=42.95 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=28.9
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEE
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~i 718 (2304)
..|+||..|.|..+.+++|+.|++|++++.|
T Consensus 37 ~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 37 NEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred EEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 4699999999999999999999999999875
No 342
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=87.68 E-value=0.63 Score=56.75 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=57.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 94 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~e-A~~ 172 (261)
T PRK03580 94 DKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEE-ALR 172 (261)
T ss_pred CCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHH-HHH
Confidence 369999999999999999999999999998875432 1 1223444445422 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
-|++|.++++ .+..+.+.+|..-
T Consensus 173 ~Glv~~vv~~-~~l~~~a~~~a~~ 195 (261)
T PRK03580 173 WGIVNRVVPQ-AELMDRARELAQQ 195 (261)
T ss_pred cCCCcEecCH-hHHHHHHHHHHHH
Confidence 8999999975 4555666666543
No 343
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=87.68 E-value=9.4 Score=46.92 Aligned_cols=94 Identities=18% Similarity=0.166 Sum_probs=63.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhhh-----------hhHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF-----------EGILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e~-----------~gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
..+.++......++++.+++ ..+=+|+|.-.. .|+.|..-.. .........++.++..+.+|+|..
T Consensus 33 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaa 112 (269)
T PRK06127 33 NAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIAC 112 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 58899999999999998876 456677776654 2777764110 111222345677888999999999
Q ss_pred EcCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |-+.| |.-+++. .|+ ++|.++++++.
T Consensus 113 v~--G~a~GgG~~Lala----cD~--~ia~~~a~f~~ 141 (269)
T PRK06127 113 IR--GYCIGGGMGIALA----CDI--RIAAEDSRFGI 141 (269)
T ss_pred EC--CEEecHHHHHHHh----CCE--EEeeCCCEeeC
Confidence 98 55555 4444444 466 78888877766
No 344
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=87.62 E-value=0.56 Score=56.80 Aligned_cols=85 Identities=16% Similarity=0.099 Sum_probs=55.9
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEecChH-HHHHhhcccc----cccccccCcceeecccCce
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTGFS-ALNKLLGREV----YSSHMQLGGPKIMATNGVV 1847 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~ltG~~-al~~~lG~~v----y~s~~~lGG~~i~~~nGv~ 1847 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++. +++.|.. .+...+|... .-+...+.+.+ ....|++
T Consensus 95 kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~e-A~~~Glv 173 (249)
T PRK07938 95 VPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGALGAATHLQRLVPQHLMRALFFTAATITAAE-LHHFGSV 173 (249)
T ss_pred CCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCchhHHHHHHhcCHHHHHHHHHhCCcCCHHH-HHHCCCc
Confidence 69999999999999999999999999998865 3343322 2333444322 11223333322 3479999
Q ss_pred EEEecCcHHHHHHHHHHHh
Q 000086 1848 HLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1848 d~~v~dd~~~~~~i~~~Ls 1866 (2304)
|.++++ .+..+.+.+|..
T Consensus 174 ~~vv~~-~~l~~~a~~~a~ 191 (249)
T PRK07938 174 EEVVPR-DQLDEAALEVAR 191 (249)
T ss_pred cEEeCH-HHHHHHHHHHHH
Confidence 999974 445555555543
No 345
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=87.54 E-value=8.6 Score=47.08 Aligned_cols=95 Identities=19% Similarity=0.201 Sum_probs=62.5
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecC---CCCCCchhhhh--------hhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANW---RGFSGGQRDLF--------EGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~---~Gf~~G~~~e~--------~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
..+.++-.....++++.+++..+-+|+|.-. +-|+.|.+-.. .........++..+..+..|+|+.|-
T Consensus 26 Nal~~~~~~~l~~al~~~~~d~v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~- 104 (261)
T PRK11423 26 NALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVE- 104 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEe-
Confidence 4788899999999999887756777777653 23777654211 01112234567788899999999988
Q ss_pred CCcCCc-hhhhhcccccCCccceeecccCcEEEee
Q 000086 2048 MAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2048 ~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
|-+.| |..+++. .|+ ++|.++++++.-
T Consensus 105 -G~a~GgG~~lala----cD~--~ia~~~a~f~~p 132 (261)
T PRK11423 105 -GSVWGGAFELIMS----CDL--IIAASTSTFAMT 132 (261)
T ss_pred -cEEechHHHHHHh----CCE--EEecCCCEecCc
Confidence 55555 4445554 366 677777766553
No 346
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=87.52 E-value=0.56 Score=57.11 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=55.4
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhccc----ccccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGRE----VYSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~----vy~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+. +. |..-+-+.+|.. +.-+...+.+.+ ...-
T Consensus 98 kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~~ 176 (260)
T PRK05809 98 KPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEE-ALRI 176 (260)
T ss_pred CCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHH-HHHc
Confidence 6999999999999999999999999999886533 32 122344555532 211223333322 3578
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~L 1865 (2304)
|++|.++++ .+..+.+.++.
T Consensus 177 Glv~~vv~~-~~l~~~a~~~a 196 (260)
T PRK05809 177 GLVNKVVEP-EKLMEEAKALA 196 (260)
T ss_pred CCCCcccCh-HHHHHHHHHHH
Confidence 999999975 44445555544
No 347
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=87.47 E-value=0.68 Score=56.87 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=56.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||.-++..||++|+.+++.+.+.. ...+-..+|... .-+...+.+.+ ...
T Consensus 107 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~e-A~~ 185 (273)
T PRK07396 107 PKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQE-ALD 185 (273)
T ss_pred CCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHH-HHH
Confidence 36999999999999999999999999999997655432 222444445322 11222233332 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.++++ .+..+.+.+|.
T Consensus 186 ~GLv~~vv~~-~~l~~~a~~~a 206 (273)
T PRK07396 186 MGLVNTVVPL-ADLEKETVRWC 206 (273)
T ss_pred cCCcCeecCH-HHHHHHHHHHH
Confidence 8999999975 44555555554
No 348
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=87.41 E-value=0.57 Score=58.02 Aligned_cols=88 Identities=19% Similarity=0.104 Sum_probs=57.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEecChH--HHHHhhcccc----cccccccCcceeecccC
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTGFS--ALNKLLGREV----YSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~ltG~~--al~~~lG~~v----y~s~~~lGG~~i~~~nG 1845 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++.|.. .+-..+|... .-+.+.+.+.+ ....|
T Consensus 118 pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~~~~~~~l~~~iG~~~A~~llltG~~i~A~e-A~~~G 196 (288)
T PRK08290 118 PKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIPGVEYFAHPWELGPRKAKELLFTGDRLTADE-AHRLG 196 (288)
T ss_pred CCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcCcchHHHHHHHhhHHHHHHHHHcCCCCCHHH-HHHCC
Confidence 469999999999999999999999999998754 5554321 1223344321 11122222222 35689
Q ss_pred ceEEEecCcHHHHHHHHHHHhcC
Q 000086 1846 VVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
++|.++++ .+..+.+.+|..-+
T Consensus 197 LV~~vv~~-~~l~~~a~~~a~~l 218 (288)
T PRK08290 197 MVNRVVPR-DELEAETLELARRI 218 (288)
T ss_pred CccEeeCH-HHHHHHHHHHHHHH
Confidence 99999975 45566666665444
No 349
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=87.40 E-value=6 Score=48.18 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=63.2
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhhhh------------hhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDLF------------EGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~e~------------~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
..+.++......++++.+++..+-+|+|.-.. .|+.|..-.. ..+.+....++..+..+.+|+|+.|
T Consensus 21 Nal~~~~~~~l~~~l~~~~~d~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 100 (256)
T TIGR02280 21 NSFTAEMHLELREALERVERDDARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAV 100 (256)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 47889999999999999987656667765433 4777763210 0111122456678889999999999
Q ss_pred cCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2046 PMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2046 ~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
- |-+.| |.-+++. .|+ .+|.++++++.
T Consensus 101 ~--G~a~GgG~~lala----~D~--ria~~~a~f~~ 128 (256)
T TIGR02280 101 N--GVAAGAGANLALA----CDI--VLAAESARFIQ 128 (256)
T ss_pred C--CeeehHHHHHHHh----CCE--EEecCCCEEeC
Confidence 8 55555 4444444 477 78888887765
No 350
>PRK10949 protease 4; Provisional
Probab=87.38 E-value=2 Score=58.43 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhc-cCC-CEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc
Q 000086 1985 SATKTAQALMDFNR-EEL-PLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR 2062 (2304)
Q Consensus 1985 sa~K~a~~i~~~~~-~~l-PLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~ 2062 (2304)
++..+++.++.+.. .++ -||.-+|+||-+....++ ....+..++....|+++++- +-.+-||-|+++..
T Consensus 348 ~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~-------i~~~i~~~r~~gKPVvas~~-~~aASggY~iA~aa- 418 (618)
T PRK10949 348 GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEV-------IRAELAAARAAGKPVVVSMG-GMAASGGYWISTPA- 418 (618)
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHH-------HHHHHHHHHhcCCcEEEEEC-CCCccHHHHHHHhc-
Confidence 34566677777644 333 478889999954433222 23344445667789999876 23445677777664
Q ss_pred cCCccceeecccCcEEEeeCc
Q 000086 2063 INSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2063 i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
|. +||.|++..|-+|-
T Consensus 419 ---d~--I~a~p~t~tGSIGV 434 (618)
T PRK10949 419 ---NY--IVASPSTLTGSIGI 434 (618)
T ss_pred ---CE--EEECCCCceeeCcE
Confidence 65 89999876665554
No 351
>PRK08788 enoyl-CoA hydratase; Validated
Probab=87.33 E-value=0.75 Score=56.96 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=57.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++ . |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 121 pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~e-A~~ 199 (287)
T PRK08788 121 GAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEE-LHD 199 (287)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHH-HHH
Confidence 369999999999999999999999999999875433 2 1222444444322 11223344333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.+++++ +..+.+++|..-+
T Consensus 200 ~GLV~~vv~~~-el~~~a~~~a~~i 223 (287)
T PRK08788 200 MGLVDVLVEDG-QGEAAVRTFIRKS 223 (287)
T ss_pred CCCCcEecCch-HHHHHHHHHHHHH
Confidence 89999999754 4555555555433
No 352
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=87.28 E-value=0.54 Score=57.59 Aligned_cols=85 Identities=16% Similarity=0.076 Sum_probs=55.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-..+|... .-+.+.+. ++=...
T Consensus 108 ~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~-a~eA~~ 186 (272)
T PRK06210 108 RKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFY-AEEALR 186 (272)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccC-HHHHHH
Confidence 469999999999999999999999999999876432 1 1222334444321 01112222 222457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.++++ .+..+.+.+|.
T Consensus 187 ~Glv~~vv~~-~~l~~~a~~~a 207 (272)
T PRK06210 187 LGLVNRVVPP-DELMERTLAYA 207 (272)
T ss_pred cCCcceecCH-HHHHHHHHHHH
Confidence 9999999975 44555555554
No 353
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=87.20 E-value=0.61 Score=58.11 Aligned_cols=86 Identities=20% Similarity=0.078 Sum_probs=54.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----C---hHHHHHhhcccc----cccccccCcceeecccCc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----G---FSALNKLLGREV----YSSHMQLGGPKIMATNGV 1846 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----G---~~al~~~lG~~v----y~s~~~lGG~~i~~~nGv 1846 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++- | ...+-..+|... .-+...+.+.+ ...-|+
T Consensus 127 ~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~~~~~~~vG~~~A~~llltG~~i~a~e-A~~~GL 205 (302)
T PRK08272 127 HKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAYRLGPQRAKRLLFTGDCITGAQ-AAEWGL 205 (302)
T ss_pred CCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChHHHHHHHhhHHHHHHHHHcCCccCHHH-HHHcCC
Confidence 3699999999999999999999999999998764331 1 111222233221 11122333333 457999
Q ss_pred eEEEecCcHHHHHHHHHHHh
Q 000086 1847 VHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1847 ~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
+|.++++ .+....+.++..
T Consensus 206 v~~vv~~-~~l~~~a~~la~ 224 (302)
T PRK08272 206 AVEAVPP-EELDERTERLVE 224 (302)
T ss_pred CceecCH-HHHHHHHHHHHH
Confidence 9999974 444455555543
No 354
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=87.03 E-value=0.65 Score=56.40 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=56.0
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |..-+-+.+|... .-+...+.+.+ ...
T Consensus 94 ~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 172 (257)
T PRK07658 94 SKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAE-ALK 172 (257)
T ss_pred CCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 36999999999999999999999999999886533 32 1222444445421 11223333333 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.|++|.+++. .+..+.++++..
T Consensus 173 ~Glv~~vv~~-~~l~~~a~~~a~ 194 (257)
T PRK07658 173 WGLVNGVFPE-ETLLDDAKKLAK 194 (257)
T ss_pred cCCcCeecCh-hHHHHHHHHHHH
Confidence 9999999974 444455555543
No 355
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=86.99 E-value=6.2 Score=43.46 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=68.7
Q ss_pred CcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccc
Q 000086 231 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ 310 (2304)
Q Consensus 231 yPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~q 310 (2304)
-|+.|||....-.--=.++.+.++|. ......+..++++.+.++-..|+.+-++. |+++.... .+.
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~----~~~~~~~~~~V~vSe~v~~~~E~R~fi~~---g~vv~~s~-----Y~~-- 67 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLI----GFGSLDPDTPVLVSEVVEIESEWRCFIVD---GEVVTGSP-----YRG-- 67 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhcc----ccCCCCCCceEEEeceEeeeeeEEEEEEC---CEEEEEee-----cCC--
Confidence 48999999855333334566666555 22233346789999999877788776664 56665421 111
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHH-HCCceeeeEEEEEEEccCCcEEEEEeccC
Q 000086 311 KIIEEGPITVAPLETVKKLEQAARRLAK-CVNYVGAATVEYLYSMETGEYYFLELNPR 367 (2304)
Q Consensus 311 KiieeaPa~~l~~e~~~~m~e~A~rlak-alGy~Ga~tVEfl~d~~~g~~yfLEINpR 367 (2304)
.+....+.+.. +.+.+.++ .-..--+..+|+-++. +|+.+++|+|+=
T Consensus 68 -----~~~~~~~~~~~----~~~~~~~~~~~~~p~~~vlDvg~~~-~G~~~lVE~N~~ 115 (130)
T PF14243_consen 68 -----DWDLEPDPDVV----AFAIQALAAAWTLPPAYVLDVGVTD-DGGWALVEANDG 115 (130)
T ss_pred -----CcccCCCHHHH----HHHHHHHHhcccCCCeEEEEEEEeC-CCCEEEEEecCc
Confidence 12111233333 33334444 2333477789999984 789999999994
No 356
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=86.84 E-value=1 Score=49.07 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=36.6
Q ss_pred CCeeeeCCCceeEEEEccCCCE-Ecc--C-CcEEEE--EccccceeeecCCCcEE-EEeeCCCCccCCCCEEEEEecC
Q 000086 687 PSKLVAETPCKLLRYLVSDGSH-IDA--D-TPYAEV--EVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~-V~~--G-~~l~~i--EaMKm~~~l~ap~~G~V-~~i~~~G~~v~~G~~La~l~~~ 757 (2304)
.+.|.||..|+|..+.-.--.. ++. | +.|.-| .+.|| .|.= +..+++||.|.+||+|+++..+
T Consensus 35 ~~~v~AP~~G~v~~i~~T~HA~~i~~~~G~eiLiHiGidTv~l--------~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 35 DGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKL--------NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCeEECcCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeeeeec--------CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 4689999999987764321111 121 1 112221 12222 2322 3338999999999999999754
No 357
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=86.83 E-value=9.7 Score=46.40 Aligned_cols=95 Identities=16% Similarity=0.097 Sum_probs=64.6
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCCC-CCCchhhhh-h------h------HHHHHHHHHHHHHcCCCCEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRDLF-E------G------ILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~G-f~~G~~~e~-~------g------ilk~ga~iv~al~~~~vP~i~ 2043 (2304)
..++++-.....++++.++. ..+-+|+|.-..+ |+.|.+-.. . + ..+....++.++..+.+|+|+
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 103 (255)
T PRK07260 24 NGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM 103 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 47899999999999998875 5566777755432 777764211 0 0 112234566788899999999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.|- |...+||.-+++. .|+ ++|.++++++.
T Consensus 104 av~-G~a~GgG~~lala----~D~--ria~~~a~f~~ 133 (255)
T PRK07260 104 CVD-GAVAGAAANMAVA----ADF--CIASTKTKFIQ 133 (255)
T ss_pred Eec-CeeehhhHHHHHh----CCE--EEEeCCCEEec
Confidence 999 3444556655555 477 88888888775
No 358
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=86.76 E-value=21 Score=44.01 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=63.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh-h-------------------hhHHHHHHHHHHHHHc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F-------------------EGILQAGSTIVENLRT 2036 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e-~-------------------~gilk~ga~iv~al~~ 2036 (2304)
.+++++...-..++++.+++ ..+-+|+|.-.. .|+.|.+-. . .........++.++..
T Consensus 28 Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 107 (272)
T PRK06142 28 NAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVAD 107 (272)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999998876 567888887643 477776411 0 0112223456778889
Q ss_pred CCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2037 YKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2037 ~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+..|+|+.|- |...+||.-+++.+ |+ ++|.++++++.
T Consensus 108 ~~kpvIAav~-G~a~GgG~~lalac----D~--~ia~~~a~f~~ 144 (272)
T PRK06142 108 CRKPVIAAVQ-GWCIGGGVDLISAC----DM--RYASADAKFSV 144 (272)
T ss_pred CCCCEEEEec-CccccchHHHHHhC----CE--EEecCCCeecc
Confidence 9999999998 34444455555543 55 66666665544
No 359
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=86.76 E-value=0.66 Score=57.76 Aligned_cols=85 Identities=16% Similarity=-0.049 Sum_probs=55.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe--------cC-hHHHHHhhccc----ccccccccCcceeecccC
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL--------TG-FSALNKLLGRE----VYSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l--------tG-~~al~~~lG~~----vy~s~~~lGG~~i~~~nG 1845 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ .+ ...+ ..+|.. +.-+.+.+.+.+ ...-|
T Consensus 112 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~~~~~-~~vG~~~A~~llltg~~i~A~e-A~~~G 189 (298)
T PRK12478 112 SKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTGMWL-YRLSLAKVKWHSLTGRPLTGVQ-AAEAE 189 (298)
T ss_pred CCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCchhHHH-HHhhHHHHHHHHHcCCccCHHH-HHHcC
Confidence 469999999999999999999999999998865333 21 1111 123321 111223334433 45799
Q ss_pred ceEEEecCcHHHHHHHHHHHh
Q 000086 1846 VVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
+++.++++ .+....+.+|..
T Consensus 190 LV~~vv~~-~~l~~~a~~~a~ 209 (298)
T PRK12478 190 LINEAVPF-ERLEARVAEVAT 209 (298)
T ss_pred CcceecCH-HHHHHHHHHHHH
Confidence 99999975 445555666544
No 360
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=86.72 E-value=0.59 Score=56.87 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=55.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+.+.+|... .-+...+.+.+ ...
T Consensus 100 ~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 178 (260)
T PRK05980 100 PKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAER-ALE 178 (260)
T ss_pred CCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHH-HHH
Confidence 36999999999999999999999999999886533 22 2223444445321 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.+.+|.
T Consensus 179 ~Glv~~vv~~~-~l~~~a~~~a 199 (260)
T PRK05980 179 IGLVNAVVPHE-ELLPAARALA 199 (260)
T ss_pred cCCCCcccCHH-HHHHHHHHHH
Confidence 89999999754 4555555554
No 361
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=86.57 E-value=9.1 Score=46.64 Aligned_cols=95 Identities=20% Similarity=0.139 Sum_probs=62.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh------hhHHHHHHHHHHHHHcCCCCEEEEEcCCCc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF------EGILQAGSTIVENLRTYKQPVFVYIPMMAE 2050 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~------~gilk~ga~iv~al~~~~vP~i~~I~~~ge 2050 (2304)
..+++.......++++.++. -.+-+|+|.-.. .|+.|.+-.. ....+....++.++..+.+|+|+.|- |..
T Consensus 22 Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~-G~a 100 (251)
T TIGR03189 22 NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVR-GQC 100 (251)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEec-Cee
Confidence 47889999999999998875 456677776543 3777654111 11233345577788899999999998 334
Q ss_pred CCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2051 LRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2051 ~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.+||.-+++.+ |+ ++|.++++++.
T Consensus 101 ~GgG~~lal~c----D~--~ia~~~a~f~~ 124 (251)
T TIGR03189 101 LGGGLEVAAAG----NL--MFAAPDAKLGQ 124 (251)
T ss_pred eeHHHHHHHhC----CE--EEEcCCCEEeC
Confidence 44555555543 66 67777766655
No 362
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=86.49 E-value=0.95 Score=55.21 Aligned_cols=84 Identities=12% Similarity=0.069 Sum_probs=53.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c---ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T---GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t---G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-+.+|... .-+...+.+.+ ....
T Consensus 99 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vg~~~a~~l~l~g~~~~a~e-A~~~ 177 (262)
T PRK05995 99 PKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPYVIRAMGERAARRYFLTAERFDAAE-ALRL 177 (262)
T ss_pred CCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHHHHHHhCHHHHHHHHHcCCccCHHH-HHHc
Confidence 369999999999999999999999999998865332 2 2222334455432 11122232222 3468
Q ss_pred CceEEEecCcHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~ 1864 (2304)
|++|.+++++ +..+.+.+|
T Consensus 178 Glv~~vv~~~-~l~~~a~~~ 196 (262)
T PRK05995 178 GLVHEVVPAE-ALDAKVDEL 196 (262)
T ss_pred CCCCeecCHH-HHHHHHHHH
Confidence 9999999643 344444444
No 363
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=86.37 E-value=29 Score=42.35 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=63.7
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh--------hhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--------EGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~--------~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
..+.++......++++.+.. ..+-+|+|.... .|+.|.+-.. .........++..+..+..|+|+.|- |
T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~-G 105 (259)
T PRK06688 27 NALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVN-G 105 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEEC-C
Confidence 57889999999999988876 467788886543 3777753110 12334456678888899999999999 3
Q ss_pred CcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2049 AELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2049 ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
-..+||.-+++.+ |+ .+|.++++++.
T Consensus 106 ~a~GgG~~lal~c----D~--ria~~~a~f~~ 131 (259)
T PRK06688 106 PAVGVGVSLALAC----DL--VYASESAKFSL 131 (259)
T ss_pred eeecHHHHHHHhC----CE--EEecCCCEecC
Confidence 3444455555543 55 66666666655
No 364
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=86.37 E-value=26 Score=42.85 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=61.3
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh-h------hhhHHHHHHHHHHHHHcCCCCEEEEEcCCC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-L------FEGILQAGSTIVENLRTYKQPVFVYIPMMA 2049 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~-e------~~gilk~ga~iv~al~~~~vP~i~~I~~~g 2049 (2304)
.+++++......++++.++. ..+-+|+|.-.+ .|+.|.+= + .....+....++..+..+.+|+|+.|- |.
T Consensus 30 Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~-G~ 108 (261)
T PRK08138 30 NALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVN-GY 108 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEc-cE
Confidence 57889999999999998865 566777776543 37777641 1 111223345567788899999999998 34
Q ss_pred cCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2050 ELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2050 e~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
..+||.-+++.+ |+ .+|.++++++.
T Consensus 109 a~GgG~~lalac----D~--ria~~~a~f~~ 133 (261)
T PRK08138 109 ALGGGCELAMHA----DI--IVAGESASFGQ 133 (261)
T ss_pred EEcHHHHHHHhC----CE--EEecCCCEeeC
Confidence 444555555543 44 55555555443
No 365
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=86.32 E-value=9.3 Score=46.65 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=63.0
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhh---------hhhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
..++.++......++++.+.. ..+-+|+|.-.. .|+.|.+=. .....+....++..+..+.+|+|+.|
T Consensus 28 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 107 (256)
T PRK06143 28 LNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARI 107 (256)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 357889999999999998865 566677776654 488885311 11122334556778889999999999
Q ss_pred cCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2046 PMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2046 ~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
- |-+.| |.-+++.+ |+ ++|.++++++.
T Consensus 108 ~--G~a~GgG~~lalac----D~--~ia~~~a~f~~ 135 (256)
T PRK06143 108 P--GWCLGGGLELAAAC----DL--RIAAHDAQFGM 135 (256)
T ss_pred C--CEEeehhHHHHHhC----CE--EEecCCCEEeC
Confidence 8 54544 55444443 55 66666666554
No 366
>PRK05869 enoyl-CoA hydratase; Validated
Probab=86.31 E-value=8.7 Score=45.96 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=61.3
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchh-hhh--------hhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQR-DLF--------EGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~-~e~--------~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
.++.++......++++..+. .++-+|+|.-.. -|+.|.. .+. ....+....++.++..+.+|+|+.|-
T Consensus 29 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~- 107 (222)
T PRK05869 29 NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAIT- 107 (222)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc-
Confidence 47888999999999988765 677777776433 2666653 110 11223345677889999999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++.+ |+ ++|.++++++.
T Consensus 108 G~a~GgG~~lalac----D~--ria~~~a~f~~ 134 (222)
T PRK05869 108 GYALGAGLTLALAA----DW--RVSGDNVKFGA 134 (222)
T ss_pred CEeecHHHHHHHhC----CE--EEecCCCEEcC
Confidence 33444455555543 55 56666655544
No 367
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=86.24 E-value=13 Score=45.26 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=63.1
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCCC-CCCchhh-hhh-------hHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRD-LFE-------GILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~G-f~~G~~~-e~~-------gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
..++.++......++++..+. ..+-+|+|.-.++ |+.|..= +.. ........++..+..+.+|+|+.|-
T Consensus 27 ~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 105 (251)
T PRK06023 27 KNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVD- 105 (251)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeC-
Confidence 368999999999999998876 4677777765433 7777541 110 1112334567789999999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++.+ |+ .+|.++++++.
T Consensus 106 G~a~GgG~~la~ac----D~--ria~~~a~f~~ 132 (251)
T PRK06023 106 GLAIGIGTTIHLHC----DL--TFASPRSLFRT 132 (251)
T ss_pred CceecHHHHHHHhC----CE--EEEeCCCEecC
Confidence 34444455555443 66 66666666554
No 368
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=85.98 E-value=1.5 Score=59.15 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=60.3
Q ss_pred ceeeeEeecCeEEEEEEEeeCCCeEEEeeCCeEEEEE------EEEecCCceEEEeCCeeEEEEeeecccceEEEEeCce
Q 000086 605 NSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAE------IHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRT 678 (2304)
Q Consensus 605 ~~~vel~~~g~~y~v~v~~~~~~~y~l~ing~~~~V~------v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t 678 (2304)
...+.+.+||+.|.|++...+... .+........ ......+.+..-+.|.-..+.+++ +-.+..+..-
T Consensus 472 ~~~~~~~vnG~~~~V~v~d~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~V~~---Gd~V~~G~~l 545 (582)
T TIGR01108 472 SGSYTVEVEGKAFVVKVSPGGDVS---QITASAPANTSGGTVAAKAGAGTPVTAPIAGSIVKVKVSE---GQTVAEGEVL 545 (582)
T ss_pred ceEEEEEECCEEEEEEEcCCcccc---ccccccccccccccccCCCCCCCeEeCCccEEEEEEEeCC---CCEECCCCEE
Confidence 456888999999999987543221 1110000000 000112233334455554444432 1122222223
Q ss_pred eccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcE
Q 000086 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPY 715 (2304)
Q Consensus 679 ~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l 715 (2304)
+.++...-...|.||.+|+|.+++|++||.|+.||+|
T Consensus 546 ~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 546 LILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred EEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 3344445567899999999999999999999999975
No 369
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=85.91 E-value=5.5 Score=54.15 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhcc-C-CCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc
Q 000086 1985 SATKTAQALMDFNRE-E-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR 2062 (2304)
Q Consensus 1985 sa~K~a~~i~~~~~~-~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~ 2062 (2304)
+....++.++.+... + -.||.-+|+||-+.-.. +.+ ...+..+.....|+++++- +-.+.||-|+++.+
T Consensus 330 ~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as---e~i----~~~i~~~~~~gKPVva~~~-g~aaSggY~iA~aa- 400 (584)
T TIGR00705 330 GGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS---EII----RRELARAQARGKPVIVSMG-AMAASGGYWIASAA- 400 (584)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH---HHH----HHHHHHHHhCCCcEEEEEC-CccccHHHHHHHhC-
Confidence 455667777777553 3 46888899999433222 112 2344556666799999998 33566677777764
Q ss_pred cCCccceeecccCcEEEeeCc
Q 000086 2063 INSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2063 i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
|. +||.|++.+|-+|-
T Consensus 401 ---D~--I~a~p~t~~GSIGv 416 (584)
T TIGR00705 401 ---DY--IVASPNTITGSIGV 416 (584)
T ss_pred ---CE--EEECCCCeeecCEE
Confidence 65 89999998766544
No 370
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=85.89 E-value=11 Score=46.03 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=62.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh-hh---------hhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF---------EGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~-e~---------~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
.+++++......++++.+.+ ..+-+|+|.-.+ .|+.|.+= +. .........++.++..+.+|+|+.|-
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 102 (257)
T PRK07658 23 NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIH 102 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 47889999999999998865 567777775533 27777641 11 11223445678889999999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++. .|+ ++|.++++++.
T Consensus 103 -G~a~GgG~~lala----cD~--ria~~~a~f~~ 129 (257)
T PRK07658 103 -GAALGGGLELAMS----CHI--RFATESAKLGL 129 (257)
T ss_pred -CeeeeHHHHHHHh----CCE--EEecCCCcccC
Confidence 3344445544444 366 66666666654
No 371
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=85.77 E-value=28 Score=42.48 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=68.0
Q ss_pred CccCHHHHHHHHHHHHHhhcc-CCCEEEEecCC-CCCCchhhhh-h---------hHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNRE-ELPLFILANWR-GFSGGQRDLF-E---------GILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~-~lPLv~l~d~~-Gf~~G~~~e~-~---------gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
.++.++.......+++.+++. .+.+|+|.-.. .|+.|.+=-. . ........++.++..+..|+|+.|-
T Consensus 27 Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 106 (257)
T COG1024 27 NALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVN 106 (257)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEc
Confidence 488999999999999999885 88888776654 5888764221 1 2334455688999999999999998
Q ss_pred CCCcCCchhhhhcccc--cC-CccceeecccCcEEEeeCccch
Q 000086 2047 MMAELRGGAWVVVDSR--IN-SDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~--i~-~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|-..+||.-.++.+. +. .+. .|+.|...+|++.+.|+
T Consensus 107 -G~a~GgG~eLal~~D~ria~~~a--~f~~pe~~iGl~Pg~g~ 146 (257)
T COG1024 107 -GYALGGGLELALACDIRIAAEDA--KFGLPEVNLGLLPGDGG 146 (257)
T ss_pred -ceEeechhhhhhcCCeEEecCCc--EecCcccccccCCCCcH
Confidence 334444555554432 11 222 34445555555554343
No 372
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=85.66 E-value=11 Score=46.02 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=65.5
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhhh-------h---hHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF-------E---GILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e~-------~---gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
.++.........++++.++. ..+-+|+|.-.. .|+.|..-.. . ...+....++..+..+..|+|+.|
T Consensus 30 Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 109 (262)
T PRK06144 30 NAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAI 109 (262)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 47888888889999988876 457777776543 4888764210 0 112234456777889999999999
Q ss_pred cCCCcCCch-hhhhcccccCCccceeecccCcEEEeeC
Q 000086 2046 PMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2046 ~~~ge~~GG-a~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
- |-+.|| .-+++. .|+ ++|.++++++.-+
T Consensus 110 ~--G~a~GgG~~lala----~D~--~ia~~~a~f~~pe 139 (262)
T PRK06144 110 A--GACVGGGAAIAAA----CDL--RIATPSARFGFPI 139 (262)
T ss_pred C--CeeeehHHHHHHh----CCE--EEecCCCEeechh
Confidence 8 555554 444444 477 8888988887644
No 373
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=85.65 E-value=12 Score=45.59 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=63.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhh---------hhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..+.++......++++.+.+ ..+-+|+|.-.. .|+.|.+-. .....+....++.++..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 26 NALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 57889999999999988765 456677775533 377776321 111223345577789999999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++.+ |+ ++|.++++++.
T Consensus 106 -G~a~GgG~~lal~c----D~--~va~~~a~f~~ 132 (260)
T PRK05809 106 -GFALGGGCELSMAC----DI--RIASEKAKFGQ 132 (260)
T ss_pred -CeeecHHHHHHHhC----CE--EEeeCCCEEeC
Confidence 34444555555553 66 77777777665
No 374
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=85.60 E-value=28 Score=45.42 Aligned_cols=103 Identities=12% Similarity=0.179 Sum_probs=62.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh--hhh-----------hHHHHHHHHHHHHHcCCCCEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD--LFE-----------GILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~--e~~-----------gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
.++..+......++++.++. ..+-+|+|.-.+ .|+.|..- ... ...+....+.+.+..+..|+|+
T Consensus 64 NALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA 143 (407)
T PLN02851 64 NALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVA 143 (407)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 58899999999999998866 577777775432 37666531 100 0112233455667789999999
Q ss_pred EEcCCCcCCc-hhhhhccccc---CCccceeecccCcEEEeeCccc
Q 000086 2044 YIPMMAELRG-GAWVVVDSRI---NSDHIEMYADRTAKGNVLEPEG 2085 (2304)
Q Consensus 2044 ~I~~~ge~~G-Ga~vv~~~~i---~~d~~~~~A~p~A~~gvl~Peg 2085 (2304)
.|- |-+.| |..+++.+.+ ..+. .|+-|..++|+...-|
T Consensus 144 ~v~--G~amGGG~gLal~~D~rVate~a--~famPE~~iGl~PdvG 185 (407)
T PLN02851 144 IMD--GITMGCGAGISIPGMFRVVTDKT--VFAHPEVQMGFHPDAG 185 (407)
T ss_pred EEc--CEEeeHHHHHHHhCCEEEEeCCc--eEecchhccCCCCCcc
Confidence 988 54444 5555554321 1222 4555556666553333
No 375
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=85.40 E-value=11 Score=45.99 Aligned_cols=95 Identities=20% Similarity=0.193 Sum_probs=62.2
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhhhh------------h-hHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDLF------------E-GILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~e~------------~-gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
.++.++......++++.++...+.+|+|.-.+ .|+.|..-.. . ........++.++..+.+|+|+.
T Consensus 26 Nal~~~~~~~l~~~~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK08140 26 NSFTREMHRELREALDQVEDDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAA 105 (262)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 57889999999999999885567777775433 4777653110 0 01112234677888999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |...+||.-+++. .|+ ++|.++++++.
T Consensus 106 v~-G~a~GgG~~lala----cD~--ria~~~a~f~~ 134 (262)
T PRK08140 106 VN-GVAAGAGANLALA----CDI--VLAARSASFIQ 134 (262)
T ss_pred EC-CeeehhHHHHHHh----CCE--EEecCCCEEec
Confidence 98 3344445555554 366 77777777664
No 376
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=85.40 E-value=14 Score=45.15 Aligned_cols=94 Identities=13% Similarity=0.156 Sum_probs=63.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh---------hhH---HHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF---------EGI---LQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~---------~gi---lk~ga~iv~al~~~~vP~i~~ 2044 (2304)
..+.++-.....++++.++. ..+-+|+|.-.. .|+.|.+-.. ... .+....++.++..+..|+|+.
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK05995 26 NAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIAR 105 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEE
Confidence 47889999999999998876 566777776544 3777754210 011 122355677888999999999
Q ss_pred EcCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |-+.| |.-+++. .|+ ++|.++++++.
T Consensus 106 v~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 134 (262)
T PRK05995 106 VH--GDAYAGGMGLVAA----CDI--AVAADHAVFCL 134 (262)
T ss_pred EC--CEEEhhHHHHHHh----CCE--EEeeCCCEEeC
Confidence 98 44444 5555554 366 67777777666
No 377
>PF13437 HlyD_3: HlyD family secretion protein
Probab=85.16 E-value=1 Score=46.98 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=30.7
Q ss_pred eeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000086 726 PLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 726 ~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2304)
+|+||.+|+|..+ +++|+.|.+|++|+.|...+.
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~ 35 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDTDD 35 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEccce
Confidence 4899999999988 999999999999999987643
No 378
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=85.07 E-value=0.56 Score=57.71 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=22.8
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 725 ~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
.+|.++.+|+|..| |++|+.|++||+|++|++.
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence 04678999999999 9999999999999999765
No 379
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=84.84 E-value=11 Score=46.16 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=63.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhh-hhh-------hHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD-LFE-------GILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~-e~~-------gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
.+|..+......++++.++. ..+-+|+|.-.. .|+.|..= +.. ........++.++..+..|+|+.|-
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~- 102 (256)
T TIGR03210 24 NAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQ- 102 (256)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 47888999999999998865 566777777654 38777641 110 0111234567788999999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++.+ |+ ++|.++++++.
T Consensus 103 G~a~GgG~~lal~c----D~--~ia~~~a~f~~ 129 (256)
T TIGR03210 103 GYAIGGGNVLVTIC----DL--TIASEKAQFGQ 129 (256)
T ss_pred CEEehhhHHHHHhC----CE--EEEeCCCEEec
Confidence 34444455555543 66 67777766665
No 380
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=84.75 E-value=2 Score=49.47 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=36.2
Q ss_pred ceEEEEEc---CcccchhhhhhcccCEEEEecCcceEecChH
Q 000086 1780 TFTLTYVT---GRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1818 (2304)
Q Consensus 1780 iptis~vt---g~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~ 1818 (2304)
.|+++++. |.+...|++++.-||.++|.+++.|+..||-
T Consensus 59 ~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi 100 (172)
T cd07015 59 IPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPI 100 (172)
T ss_pred cCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEcccc
Confidence 59999999 8899899999999999999999999999983
No 381
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=84.65 E-value=13 Score=45.54 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=63.6
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhhh---------hhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF---------EGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e~---------~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
.++.++......++++.++. ..+-+|+|.-.. .|+.|..-.. ....+....++..+..+..|+|+.|-
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 103 (258)
T PRK09076 24 NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN 103 (258)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 47889999999999998875 567777776654 3877753110 11223345577888999999999998
Q ss_pred CCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.| |.-+++. .|+ ++|.++++++.
T Consensus 104 --G~a~GgG~~lala----cD~--~ia~~~a~f~~ 130 (258)
T PRK09076 104 --GYAMGGGLECALA----CDI--RIAEEQAQMAL 130 (258)
T ss_pred --CEEecHHHHHHHh----CCE--EEecCCCEeeC
Confidence 55544 5544444 366 77777776655
No 382
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=84.57 E-value=11 Score=46.05 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=61.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhhh-------------hhHHHHHHHHHHHHHcCCCCEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF-------------EGILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e~-------------~gilk~ga~iv~al~~~~vP~i 2042 (2304)
.+++.+-..-..++++.+++ ..+-+|+|.-.. .|+.|.+-.. ....+....++.++..+.+|+|
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 104 (260)
T PRK05980 25 NALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVI 104 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 47889999999999998876 567778777654 3877764211 0111223456778889999999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.|- |...+||.-+++.+ |+ .+|.++++++.
T Consensus 105 aav~-G~a~GgG~~lal~c----D~--ria~~~a~f~~ 135 (260)
T PRK05980 105 AAVN-GLAFGGGCEITEAV----HL--AIASERALFAK 135 (260)
T ss_pred EEEc-CEEEhhhhHHhHhC----CE--EEecCCCEecC
Confidence 9998 34444455444443 55 56666665544
No 383
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=84.52 E-value=16 Score=44.67 Aligned_cols=94 Identities=17% Similarity=0.047 Sum_probs=62.3
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhhhh------hh-----HHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDLF------EG-----ILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~e~------~g-----ilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
.+++++......++++.+.. .+-+|++...+ -|+.|..-.. .+ .......++.++..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~L~~~l~~~~~-~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 104 (255)
T PRK07112 26 NTINDRLIAECMDVLDRCEH-AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVR 104 (255)
T ss_pred CCCCHHHHHHHHHHHHHhhc-CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEe
Confidence 57889999999999998874 56677776543 3777652110 00 112224567788889999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++. .|+ ++|.++++++.
T Consensus 105 -G~a~GgG~~lala----~D~--~ia~~~a~f~~ 131 (255)
T PRK07112 105 -GKVNAGGIGFVAA----SDI--VIADETAPFSL 131 (255)
T ss_pred -cEEEcchhHHHHc----CCE--EEEcCCCEEeC
Confidence 3344445555554 477 78888888776
No 384
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=84.35 E-value=18 Score=45.21 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=64.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh--------------------------hhHHHHHHH
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--------------------------EGILQAGST 2029 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~--------------------------~gilk~ga~ 2029 (2304)
..+++++...-..++++.++. ..+-+|+|.-.. .|+.|..-.. .........
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (296)
T PRK08260 25 LNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGR 104 (296)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHH
Confidence 358899999999999998865 567777776543 3666643110 011112235
Q ss_pred HHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2030 IVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2030 iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
++..+..+.+|+|+.|- |.+.+||.-+++. .|+ ++|.++++++.-
T Consensus 105 ~~~~l~~~pkPvIAav~-G~a~GgG~~Lala----cD~--ria~~~a~f~~p 149 (296)
T PRK08260 105 VTLRIFDSLKPVIAAVN-GPAVGVGATMTLA----MDI--RLASTAARFGFV 149 (296)
T ss_pred HHHHHHhCCCCEEEEEC-CeeehHhHHHHHh----CCE--EEeeCCCEEecc
Confidence 67788889999999998 3444556655555 477 788888887763
No 385
>PRK11778 putative inner membrane peptidase; Provisional
Probab=84.34 E-value=9.6 Score=48.19 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=47.8
Q ss_pred CEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2002 PLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2002 PLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
-||.-.|+||-++...+. .+..+..+.+.+.|+++++-. -.+-||-|+++.. |. +||.|.+.+|.+
T Consensus 125 aVvLridSpGG~v~~s~~-------a~~~l~~lr~~~kpVva~v~~-~AASggY~iAsaA----D~--I~A~P~a~vGSI 190 (330)
T PRK11778 125 EVLLRLESPGGVVHGYGL-------AASQLQRLRDAGIPLTVAVDK-VAASGGYMMACVA----DK--IIAAPFAIVGSI 190 (330)
T ss_pred eEEEEEeCCCCchhHHHH-------HHHHHHHHHhcCCCEEEEECC-chhhHHHHHHHhC----CE--EEECCCCeEEee
Confidence 489999999954432211 233356677888999999872 2345666666653 55 899999998888
Q ss_pred Cccc
Q 000086 2082 EPEG 2085 (2304)
Q Consensus 2082 ~Peg 2085 (2304)
|.-+
T Consensus 191 GVi~ 194 (330)
T PRK11778 191 GVVA 194 (330)
T ss_pred eeee
Confidence 7743
No 386
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=84.34 E-value=1.3 Score=53.86 Aligned_cols=89 Identities=24% Similarity=0.192 Sum_probs=61.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.++|||.-++..||++|+.+++.+.+ . |...+-+.+|..- .-+...+.+.+ ...
T Consensus 98 ~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~e-A~~ 176 (257)
T COG1024 98 PKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAE-ALE 176 (257)
T ss_pred CCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHH-HHH
Confidence 469999999999999999999999999998875433 2 1233444555432 01112222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
.|++|.++++..+..+.+++|...+
T Consensus 177 ~Glv~~vv~~~~~l~~~a~~~a~~~ 201 (257)
T COG1024 177 LGLVDEVVPDAEELLERALELARRL 201 (257)
T ss_pred cCCcCeeeCCHHHHHHHHHHHHHHH
Confidence 9999999987667777777777655
No 387
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=84.27 E-value=47 Score=42.63 Aligned_cols=95 Identities=13% Similarity=0.154 Sum_probs=64.6
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhh-h-----------hhhHHHHHHHHHHHHHcCCCCEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD-L-----------FEGILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~-e-----------~~gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
.+++.+......++++.+.. ..+-+|+|.-.. .|+.|..- + ........-.++.++..+.+|+|+
T Consensus 50 NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIA 129 (360)
T TIGR03200 50 NSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVIC 129 (360)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 47889999999999988764 678899998766 38777631 1 111222234567788899999999
Q ss_pred EEcCCCcCCc-hhhhhcccccCCccceeecccCcEEEee
Q 000086 2044 YIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2044 ~I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
.|- |-+.| |.-+++. +|+ .+|.++|+++.-
T Consensus 130 AVn--G~AiGGGleLALa----CDl--rIAse~A~Fg~P 160 (360)
T TIGR03200 130 RVN--GMRIGGGQEIGMA----ADF--TIAQDLANFGQA 160 (360)
T ss_pred EEC--CEeeeHHHHHHHh----CCE--EEEcCCCEEeCc
Confidence 998 44555 4444444 366 677777776663
No 388
>PRK08139 enoyl-CoA hydratase; Validated
Probab=84.22 E-value=17 Score=44.71 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=61.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh----------hhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL----------FEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e----------~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..+.++......++++.++. ..+-+|+|.-.. .|+.|..-. .....+....++.++..+..|+|+.|-
T Consensus 33 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 112 (266)
T PRK08139 33 NALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVH 112 (266)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 57889999999999998765 456666665432 377776421 011222335677888999999999998
Q ss_pred CCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.| |.-+++.+ |+ .+|.++++++.
T Consensus 113 --G~a~GgG~~lalac----D~--ria~~~a~f~~ 139 (266)
T PRK08139 113 --GIATAAGCQLVASC----DL--AVAADTARFAV 139 (266)
T ss_pred --ceeeHHHHHHHHhC----CE--EEEeCCCEEeC
Confidence 55555 54444443 66 67777776655
No 389
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=84.22 E-value=15 Score=44.80 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=63.3
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-h------hhH---HHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F------EGI---LQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~------~gi---lk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..+.++......++++.++. .++-+|+|.-. +.|+.|..-. . ... .+....++..+..+.+|+|+.|-
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 102 (249)
T PRK07938 23 NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVH 102 (249)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 57889999999999998866 46667777653 3477776421 1 111 12234567788899999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++. .|+ ++|.++++++.
T Consensus 103 -G~a~GgG~~Lal~----cD~--ria~~~a~f~~ 129 (249)
T PRK07938 103 -GFCLGGGIGLVGN----ADV--IVASDDATFGL 129 (249)
T ss_pred -CEEeehHHHHHHh----CCE--EEEeCCCEeeC
Confidence 3444445555554 366 77777777766
No 390
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=84.05 E-value=20 Score=44.38 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=62.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh-------------hhHHHHHHHHHHHHHcCCCCEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-------------EGILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~-------------~gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
.+++++......++++.++. ..+-+|+|.-.. .|+.|..-.. .........++.++..+.+|+|+
T Consensus 39 Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 118 (277)
T PRK08258 39 NPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIA 118 (277)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 57888989999999988864 567777776543 3776653211 01112234677889999999999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.|- |...+||.-+++.+ |+ ++|.++++++.
T Consensus 119 aV~-G~a~GgG~~Lalac----D~--ria~~~a~f~~ 148 (277)
T PRK08258 119 AVD-GVCAGAGAILAMAS----DL--RLGTPSAKTAF 148 (277)
T ss_pred EEC-CeeehHHHHHHHhC----CE--EEecCCCEEec
Confidence 998 33444455555543 66 77777777766
No 391
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=83.77 E-value=0.97 Score=59.06 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=40.3
Q ss_pred eCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEee
Q 000086 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKM 739 (2304)
Q Consensus 692 APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i~ 739 (2304)
++-.|.--+.+|++||+|++||+|++-... +..++.||.+|+|+.|.
T Consensus 34 ~q~~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~ 80 (447)
T TIGR01936 34 RDFVGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAIN 80 (447)
T ss_pred hhcCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEe
Confidence 444677778999999999999999998754 57899999999999993
No 392
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=83.69 E-value=15 Score=45.25 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=61.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh-----------hhhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-----------FEGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e-----------~~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
..+.++-.....++++.++. ..+-+|+|.-.. .|+.|..=. ..........++..+..+.+|+|+.|
T Consensus 34 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 113 (268)
T PRK07327 34 NAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAI 113 (268)
T ss_pred CCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 47888889999999988876 456677775443 377776321 11122333566778889999999999
Q ss_pred cCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2046 PMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2046 ~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
- |-+.| |.-+++. .|+ ++|.++++++.
T Consensus 114 ~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 141 (268)
T PRK07327 114 H--GPAVGAGLVAALL----ADI--SIAAKDARIID 141 (268)
T ss_pred c--CeeeehhhHHHHh----CCE--EEecCCCEEeC
Confidence 8 44444 5544544 366 67777776664
No 393
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=83.50 E-value=1.2 Score=55.00 Aligned_cols=87 Identities=10% Similarity=0.036 Sum_probs=57.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEec----C-hHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT----G-FSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~lt----G-~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++. +++. | ...+.+.+|... .-+...+.+.+ ..
T Consensus 107 ~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~e-A~ 185 (278)
T PLN03214 107 RLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAE-AK 185 (278)
T ss_pred CCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHH-HH
Confidence 369999999999999999999999999998864 3442 1 122445555432 11122233332 23
Q ss_pred ccCceEEEecCcHHHHHHHHHHHhc
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
.-|++|.++++ .+..+.+++|..-
T Consensus 186 ~~Glv~~vv~~-~~l~~~a~~~a~~ 209 (278)
T PLN03214 186 QLGLIDEVVPA-AALMEAAASAMER 209 (278)
T ss_pred HcCCCcEecCh-HHHHHHHHHHHHH
Confidence 68999999975 4555666666543
No 394
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=83.32 E-value=4.6 Score=52.10 Aligned_cols=113 Identities=12% Similarity=0.178 Sum_probs=65.9
Q ss_pred eEEEEEEEEecCCceEEEeCCeeEEEE---eeecccceEEEEeCceeccccCCCCCeeeeCCCceeEEEEcc-CCCEEcc
Q 000086 636 SEIEAEIHTLRDGGLLMQLDGNSHVVY---AEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVS-DGSHIDA 711 (2304)
Q Consensus 636 ~~~~V~v~~l~dg~l~v~~~G~s~~v~---~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~-~Gd~V~~ 711 (2304)
..+.+.++..+++.+.+.++|.+|..- +..+.....+.+++ ..+....+.-.-|..+.+..+ .+-.|+-
T Consensus 511 ~~v~v~V~~~~~s~~si~~~~~~~~~i~~~~~~~~~~~s~~~~~-------~~~~~~~~~~~~g~~~~l~~~~~~~~ve~ 583 (670)
T KOG0238|consen 511 NPVHVAVRFNSDSSLSIEVDGSSYLTIKGDINVPGPLLSISVDG-------EGNGYQGRVIILGDEISLFSNEGVIKVEV 583 (670)
T ss_pred cceEEEEEECCCCeEEEEecCCceEeeccceecccccceEEEEe-------ccCceEEEEEEeCCeEEEEecCcceeEec
Confidence 347788888889999999999985432 12212222222221 122333333333433333332 2223333
Q ss_pred CCcEEEEEccccce------eeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 712 DTPYAEVEVMKMCM------PLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 712 G~~l~~iEaMKm~~------~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
.++ -.++.|+=+. .+.||..|+|+++ +++|+.|..||.|..++.
T Consensus 584 ~~~-k~l~~~~s~~~~~~s~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~A 634 (670)
T KOG0238|consen 584 LPP-KYLSPQSSETKEDGSGVIVAPMPGIIEKVLVKPGDKVKEGQELVVLIA 634 (670)
T ss_pred CCh-HhhhhhhhhhccCCCCceecCCCCeeeeeeccchhhhcccCceEEEEe
Confidence 333 2333343332 3789999999999 999999999999988764
No 395
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=83.32 E-value=1.3 Score=53.48 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=31.8
Q ss_pred CCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 685 ~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
.-...|.||..|+|.++++++||.|..||+|++||
T Consensus 239 KmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 239 KLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred ceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 33457999999999999999999999999999996
No 396
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=83.31 E-value=1.1 Score=58.45 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=24.0
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
..|.||.+|.|.+++|++||+|++||+|+.|+
T Consensus 59 ~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~ 90 (421)
T TIGR03794 59 DTIQSPGSGVVIDLDVEVGDQVKKGQVVARLF 90 (421)
T ss_pred eEEECCCCeEEEEEECCCcCEECCCCEEEEEC
Confidence 45777777777777777777777777777774
No 397
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=83.13 E-value=13 Score=45.78 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=61.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh-hh-h-----------hHHHHHHHHHHHHHcCCCCEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF-E-----------GILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~-e~-~-----------gilk~ga~iv~al~~~~vP~i 2042 (2304)
...+.++......++++.++. ..+-+|+|.-.. .|+.|.+- +. . ...+....++.++..+.+|+|
T Consensus 29 ~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 108 (275)
T PRK09120 29 RNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTI 108 (275)
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 358889999999999998875 566677775543 37777641 11 0 011123456778889999999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.|- |...+||.-+++.+ |+ ++|.++|+++.
T Consensus 109 Aav~-G~a~GgG~~lal~c----D~--~ia~~~a~f~~ 139 (275)
T PRK09120 109 AMVN-GWCFGGGFSPLVAC----DL--AIAADEAQFGL 139 (275)
T ss_pred EEEc-CEEechhHHHHHhC----CE--EEEeCCcEecC
Confidence 9998 34444455555543 55 66666666655
No 398
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=82.87 E-value=40 Score=41.16 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=61.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh-hh------hhHHHHHHHHHHHHHcCCCCEEEEEcCCC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF------EGILQAGSTIVENLRTYKQPVFVYIPMMA 2049 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~-e~------~gilk~ga~iv~al~~~~vP~i~~I~~~g 2049 (2304)
.+++++......++++.++. ..+-+|+|.-.. .|+.|..= +. +........++..+..+..|+|+.|- |.
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~-G~ 104 (257)
T PRK05862 26 NALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVA-GY 104 (257)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEc-cE
Confidence 57889999999999988865 566778886653 37777641 10 11112233456778899999999998 33
Q ss_pred cCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2050 ELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2050 e~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
..+||.-+++.+ |+ ++|.++++++.
T Consensus 105 a~GgG~~lalac----D~--~ia~~~a~f~~ 129 (257)
T PRK05862 105 ALGGGCELAMMC----DI--IIAADTAKFGQ 129 (257)
T ss_pred EeHHHHHHHHHC----CE--EEEeCCCEEeC
Confidence 444455555543 66 67777666655
No 399
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=82.79 E-value=1.7 Score=56.78 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=38.0
Q ss_pred eCceeccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 675 DGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 675 ~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
+..-+.++...-...|.||..|+|.+|++++||.|..||+|+.||.
T Consensus 122 Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 122 DEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISK 167 (463)
T ss_pred CCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence 3334445555556789999999999999999999999999999974
No 400
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=82.69 E-value=2.8 Score=52.19 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=39.6
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc--ccceeeecCCCcEEEEe
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM--KMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM--Km~~~l~ap~~G~V~~i 738 (2304)
..++||-+| ++...++.|+.|++||+|++|--. .-..+++||.+|+|-.+
T Consensus 232 ~~v~Ap~~G-i~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 232 DWVAAIHGG-LFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred EEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 458999999 556889999999999999999432 11345899999998665
No 401
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=82.66 E-value=14 Score=45.28 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=62.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh---------hh---HHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF---------EG---ILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~---------~g---ilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
.++.+.......++++.+++ ..+-+|+|.-.+ .|+.|..-.. .. ..+....++..+..+..|+|+.
T Consensus 28 Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (265)
T PRK05674 28 NAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAV 107 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEE
Confidence 47888889999999998876 445566665443 4777753110 00 1122346778889999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |...+||.-+++. .|+ ++|.++++++.
T Consensus 108 V~-G~a~GgG~~lal~----~D~--~ia~~~a~f~~ 136 (265)
T PRK05674 108 VQ-GAAFGGALGLISC----CDM--AIGADDAQFCL 136 (265)
T ss_pred Ec-CEEEechhhHhhh----cCE--EEEeCCCEEeC
Confidence 98 3444445555554 366 77777777766
No 402
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=82.61 E-value=16 Score=44.88 Aligned_cols=98 Identities=16% Similarity=0.074 Sum_probs=64.6
Q ss_pred CCccCHHHHHHHHHHHHHhhcc-C-CCEEEEecCC-CCCCchhh-hh--------------hhHHHHHHHHHHHHHcCCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE-E-LPLFILANWR-GFSGGQRD-LF--------------EGILQAGSTIVENLRTYKQ 2039 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~-~-lPLv~l~d~~-Gf~~G~~~-e~--------------~gilk~ga~iv~al~~~~v 2039 (2304)
..+++++-.....++++.+... . +-+|+|.-.. .|+.|..= +. .........++.++..+.+
T Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 104 (266)
T PRK05981 25 MNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPC 104 (266)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCC
Confidence 3588899999999999988753 3 6666665433 47766431 10 0112223557788899999
Q ss_pred CEEEEEcCCCcCCch-hhhhcccccCCccceeecccCcEEEeeCc
Q 000086 2040 PVFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2040 P~i~~I~~~ge~~GG-a~vv~~~~i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
|+|+.|- |-+.|| .-+++. .|+ ++|.++++++..++
T Consensus 105 pvIaav~--G~a~GgG~~lala----cD~--~ia~~~a~f~~~e~ 141 (266)
T PRK05981 105 PIVTAVN--GPAAGVGMSFALM----GDL--ILCARSAYFLQAFR 141 (266)
T ss_pred CEEEEEC--CEeehHHHHHHHh----CCE--EEecCCCEEechHh
Confidence 9999998 555554 444443 477 88888888775433
No 403
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=82.58 E-value=0.82 Score=49.21 Aligned_cols=115 Identities=10% Similarity=0.137 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEE
Q 000086 57 GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVW 136 (2304)
Q Consensus 57 G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~ 136 (2304)
...|+.+++-||+.|++|+ +++.......... ...+|+++.++..+ +..+ +.+.+-.++. ++|+
T Consensus 6 SHSALqIl~GAk~EGFrT~---------~ic~~~r~~~Y~~-f~~iDe~i~~d~f~---di~~-~~~q~~L~~~--N~I~ 69 (124)
T PF06849_consen 6 SHSALQILDGAKDEGFRTI---------AICQKGREKFYRR-FPFIDEVIVLDSFS---DILS-EEVQEKLREM--NAIF 69 (124)
T ss_dssp STTHHHHHHHHHHTT--EE---------EEEETTCHHHHHT-TTT-SEEEEESSCG---HCCS-HHHHHHHHHT--TEEE
T ss_pred chHHHHHhhhHHHcCCcEE---------EEECCCCcchhhh-cCcCcEEEEeCCHH---HHHh-HHHHHHHHHC--CeEE
Confidence 5689999999999999984 4555332222222 23799999985321 2222 1334444343 6666
Q ss_pred eCCCcCCCCCchHHHHHH-CCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCC
Q 000086 137 PGWGHASEIPELPDTLST-KGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189 (2304)
Q Consensus 137 pG~G~~SEn~~la~~l~~-~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp 189 (2304)
.-.|...+..- .+..++ ..++++|+.. .++.-.|...-+.+++++|||.|.
T Consensus 70 VPhgSfv~Y~G-~d~ie~~~~vP~FGNR~-lLrwEseR~~~~~lL~~AgI~~P~ 121 (124)
T PF06849_consen 70 VPHGSFVAYVG-YDRIENEFKVPIFGNRN-LLRWESERDKERNLLEKAGIPMPR 121 (124)
T ss_dssp --BTTHHHHH--HHHHHHT-SS-EES-CC-GGHCCCSHHHHHHHHHHTT-BB--
T ss_pred ecCCCeeEeec-HHHHhhcCCCCeecChH-HHHhhhhhhhHHHHHHHcCCCCCc
Confidence 54444333211 144555 7889998753 345555888888899999999997
No 404
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=82.44 E-value=2.5 Score=48.50 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred cCCCCCeeeeCCCceeEEEEccCCCEEcc----CCcEEEEEccccceeeecCCCcEEEEe--------------------
Q 000086 683 NDHDPSKLVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQFK-------------------- 738 (2304)
Q Consensus 683 ~~~dp~~l~APmPGkvv~~~V~~Gd~V~~----G~~l~~iEaMKm~~~l~ap~~G~V~~i-------------------- 738 (2304)
.......|.||+.|+++.+ -++-|.|-+ |+-+|+.=. +..|.||.+|+|..+
T Consensus 16 ~~~~~~~i~aP~~G~vi~L-~~V~D~vFs~k~mGdGvAI~P~---~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIH 91 (169)
T PRK09439 16 KDTGTIEIIAPLSGEIVNI-EDVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVH 91 (169)
T ss_pred ccccceEEEecCCeEEEEh-HHCCChHhcccCccceEEEEcc---CCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q ss_pred ----------------eCCCCccCCCCEEEEEecC
Q 000086 739 ----------------MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 739 ----------------~~~G~~v~~G~~La~l~~~ 757 (2304)
+++||.|.+||+|+++.++
T Consensus 92 iGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~ 126 (169)
T PRK09439 92 FGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFDLP 126 (169)
T ss_pred EeecccccCCCceEEEecCCCEEeCCCEEEEEcHH
No 405
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=82.43 E-value=2.5 Score=45.49 Aligned_cols=106 Identities=25% Similarity=0.304 Sum_probs=59.8
Q ss_pred cEEEEEC----chHHHHHHHHHHHHcCCcccccccceeEE-EEEeccCCCCCChhhhhccEEEE-ccCCCCCCCccCHHH
Q 000086 49 HSILIAN----NGMAAVKFIRSIRTWAYETFGTEKAILLV-AMATPEDMRINAEHIRIADQFVE-VPGGTNNNNYANVQL 122 (2304)
Q Consensus 49 ~kILIan----~G~~Av~iIrsar~~Gy~v~~~~~~i~~v-~vat~~D~~~~a~~ir~ADe~v~-vp~~~~~~sY~dvd~ 122 (2304)
|+|.|+| .+-.+.++++.+++.||+++..+..-..+ ..-++.+.... -.-.|-++. +|+ .....
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~---p~~iDlavv~~~~-------~~~~~ 70 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEI---PEPIDLAVVCVPP-------DKVPE 70 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGC---SST-SEEEE-S-H-------HHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCC---CCCCCEEEEEcCH-------HHHHH
Confidence 5788998 36679999999999998876322211111 01111121110 012333332 222 23567
Q ss_pred HHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHH
Q 000086 123 IVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATS 166 (2304)
Q Consensus 123 Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~ea 166 (2304)
+++-|.+.++.+||--.| .++.++.+.++++|+.++||.---
T Consensus 71 ~v~~~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vigp~C~g 112 (116)
T PF13380_consen 71 IVDEAAALGVKAVWLQPG--AESEELIEAAREAGIRVIGPNCLG 112 (116)
T ss_dssp HHHHHHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEEESS-HH
T ss_pred HHHHHHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEEeCCcce
Confidence 777778889999997766 566678899999999999997543
No 406
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=82.32 E-value=1.8 Score=54.63 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=33.0
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK 722 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMK 722 (2304)
...|.||..|+|.+++|++||.|+.||+|+.|+.++
T Consensus 45 ~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 45 TNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred eEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 456999999999999999999999999999998753
No 407
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=82.05 E-value=1.3 Score=49.49 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=39.3
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEcccccee-eecCCCcEEEEe
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMP-LLSPASGVLQFK 738 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~-l~ap~~G~V~~i 738 (2304)
-..=|.-|..+-..+.+|++|.+|+.+|-+.+=|-|+- ++||.+|+|..+
T Consensus 82 L~l~~veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v 132 (150)
T PF09891_consen 82 LCLVPVEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFV 132 (150)
T ss_dssp -EEEEEESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEE
T ss_pred EEEEEecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEE
Confidence 34568889999999999999999999999999999986 899999999877
No 408
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=81.85 E-value=4.4 Score=48.04 Aligned_cols=38 Identities=8% Similarity=0.020 Sum_probs=34.3
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF 1817 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~ 1817 (2304)
.|+|+++.|.|.|+|-+++..||++++.+++.++..|.
T Consensus 71 kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv 108 (211)
T cd07019 71 KPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGI 108 (211)
T ss_pred CCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEE
Confidence 49999999999999999999999999999987766663
No 409
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=81.62 E-value=1.3 Score=57.90 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=38.2
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEee
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKM 739 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i~ 739 (2304)
-.|.--+.+|++||+|++||+|++-... +..++.||.+|+|+.|.
T Consensus 37 h~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 37 YVGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred cCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 3556667899999999999999976654 57899999999999993
No 410
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=81.61 E-value=18 Score=44.04 Aligned_cols=95 Identities=12% Similarity=0.127 Sum_probs=62.2
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh-------hhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-------EGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~-------~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
...+++.......++++.+++ ..+-+|+|.-.+ .|+.|.+=.. .........++..+..+.+|+|+.|-
T Consensus 23 ~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-- 100 (255)
T PRK09674 23 RNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVN-- 100 (255)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 358899999999999998875 566777776543 3777754211 01112234567788899999999998
Q ss_pred CcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2049 AELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2049 ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.| |.-+++.+ |+ ++|.++++++.
T Consensus 101 G~a~GgG~~lalac----D~--~ia~~~a~f~~ 127 (255)
T PRK09674 101 GYALGAGCELALLC----DI--VIAGENARFGL 127 (255)
T ss_pred CEeehHHHHHHHhC----CE--EEecCCCEEeC
Confidence 55555 55545443 55 66666666554
No 411
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=81.60 E-value=56 Score=42.46 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=56.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh--h----hh-------HHHHHHHHHHHHHcCCCCEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--F----EG-------ILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e--~----~g-------ilk~ga~iv~al~~~~vP~i~ 2043 (2304)
.++..+-.....++++.+.. ..+-+|+|.-.. .|..|..-- . .+ ..+..-.+...+..+..|+|+
T Consensus 31 NALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa 110 (381)
T PLN02988 31 NALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVS 110 (381)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 47888999999999988755 567777776543 477774211 0 01 011112344567889999999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccCcEEE
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGN 2079 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~g 2079 (2304)
.|- |-..+||..+++.+ |+ .+|.++++++
T Consensus 111 ~v~-G~a~GGG~~Lal~~----D~--rvate~a~f~ 139 (381)
T PLN02988 111 ILN-GIVMGGGAGVSVHG----RF--RIATENTVFA 139 (381)
T ss_pred Eec-CeEeehhhHHhhcC----Ce--EEEcCCcEEe
Confidence 888 34444455555543 44 4555554443
No 412
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=81.49 E-value=22 Score=43.57 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=61.2
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh-hh--------h---HHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-FE--------G---ILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e-~~--------g---ilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
.++.++......++++.++. ..+-+|+|.-.. .|+.|..-. .. . ..+....++.++..+..|+|+.
T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 106 (262)
T PRK07468 27 NALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGR 106 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 47889999999999998875 456667775532 378776411 10 0 1122344678889999999999
Q ss_pred EcCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |-+.| |.-+++. .|+ ++|.++++++.
T Consensus 107 v~--G~a~GgG~~lala----~D~--ria~~~a~f~~ 135 (262)
T PRK07468 107 IQ--GQAFGGGVGLISV----CDV--AIAVSGARFGL 135 (262)
T ss_pred EC--CEEEhHHHHHHHh----CCE--EEEeCCCEEeC
Confidence 98 55555 4444444 365 66666666554
No 413
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=81.40 E-value=12 Score=45.40 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=61.2
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh-----hhHHHH-HHHHHHHHHcCCCCEEEEEcCCCc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-----EGILQA-GSTIVENLRTYKQPVFVYIPMMAE 2050 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~-----~gilk~-ga~iv~al~~~~vP~i~~I~~~ge 2050 (2304)
..++++-..-..++++.++. ..+.+|+|.... .|+.|..-.. .+-.++ ...++..+..+..|+|+.|- |..
T Consensus 27 Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~-G~a 105 (249)
T PRK07110 27 NAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQ-GHA 105 (249)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEec-Cce
Confidence 57888999999999998866 456777776533 4777764211 010011 13567788899999999998 344
Q ss_pred CCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2051 LRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2051 ~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.+||..+++.+ |+ +++.++++++.
T Consensus 106 ~GgG~~lal~c----D~--~ia~~~a~f~~ 129 (249)
T PRK07110 106 IGGGLVLGLYA----DI--VVLSRESVYTA 129 (249)
T ss_pred echHHHHHHhC----CE--EEEeCCCEecC
Confidence 44555555554 55 66666665543
No 414
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=81.33 E-value=11 Score=45.95 Aligned_cols=143 Identities=17% Similarity=0.220 Sum_probs=84.4
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh--h-ccEEEEccCCCCCCCccCHHHHHH
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR--I-ADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir--~-ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
+||||+|+--.|.+++..+.+.|+ ++ +.++| +. +.-.. . ....+.+++ +.|.+.+.+
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~-v~--------~sv~t--~~---g~~~~~~~~~~~~v~~G~------lg~~~~l~~ 60 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY-VI--------VSVAT--SY---GGELLKPELPGLEVRVGR------LGDEEGLAE 60 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC-EE--------EEEEh--hh---hHhhhccccCCceEEECC------CCCHHHHHH
Confidence 489999999999999999999998 53 44444 21 11111 1 111333332 237899999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
+++++++++|+-. +- .|+....+ ...+.++++|||...+.-......+.
T Consensus 61 ~l~~~~i~~vIDA----TH--PfA~~is~--------------------na~~a~~~~~ipylR~eRp~~~~~~~----- 109 (249)
T PF02571_consen 61 FLRENGIDAVIDA----TH--PFAAEISQ--------------------NAIEACRELGIPYLRFERPSWQPEPD----- 109 (249)
T ss_pred HHHhCCCcEEEEC----CC--chHHHHHH--------------------HHHHHHhhcCcceEEEEcCCcccCCC-----
Confidence 9999999999933 11 13332211 23456778888877665422111000
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHH
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALF 259 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~ 259 (2304)
+. -..+.|.+|+.+.+.+.+ ++-|....-..+|....
T Consensus 110 --~~---~~~v~~~~eA~~~l~~~~------------~~~iflttGsk~L~~f~ 146 (249)
T PF02571_consen 110 --DN---WHYVDSYEEAAELLKELG------------GGRIFLTTGSKNLPPFV 146 (249)
T ss_pred --Ce---EEEeCCHHHHHHHHhhcC------------CCCEEEeCchhhHHHHh
Confidence 01 113789999988876554 23444444455555543
No 415
>PLN02888 enoyl-CoA hydratase
Probab=81.26 E-value=23 Score=43.58 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=61.4
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh-h----hhHH-HHHHHHHHHHHcCCCCEEEEEcCCCc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F----EGIL-QAGSTIVENLRTYKQPVFVYIPMMAE 2050 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e-~----~gil-k~ga~iv~al~~~~vP~i~~I~~~ge 2050 (2304)
..+.++-.....++++.++. ..+-+|+|.-.. .|+.|.+-. . .+-. .....++..+..+.+|+|+.|- |-
T Consensus 32 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~--G~ 109 (265)
T PLN02888 32 NALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAIN--GF 109 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEEC--Ce
Confidence 47889999999999998875 456677775433 488876421 1 1111 1123456678889999999998 44
Q ss_pred CCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2051 LRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2051 ~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.| |..+++. .|+ ++|.++++++.
T Consensus 110 a~GgG~~lal~----cD~--ria~~~a~f~~ 134 (265)
T PLN02888 110 AITAGFEIALA----CDI--LVASRGAKFID 134 (265)
T ss_pred eechHHHHHHh----CCE--EEecCCCEecC
Confidence 545 5544544 366 77777776655
No 416
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=80.97 E-value=1.9 Score=42.08 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=29.3
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEE
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~i 718 (2304)
...+.||..|+|+++.++.|+.|..|++++.|
T Consensus 42 ~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 42 TSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 45699999999999999999999999999864
No 417
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=80.95 E-value=74 Score=39.10 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=61.3
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh-h------hHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-E------GILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~-~------gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
..++.++......++++.++. -.+-+|+|.-.. .|+.|..-.. . ........++..+..+.+|+|+.|-
T Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~-- 102 (258)
T PRK06190 25 RNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAIN-- 102 (258)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 358899999999999999875 456677776543 3777654211 0 0011234567789999999999998
Q ss_pred CcCCch-hhhhcccccCCccceeecccCcEEEe
Q 000086 2049 AELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2049 ge~~GG-a~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.|| .-+++. .|+ ++|.++++++.
T Consensus 103 G~a~GgG~~lala----cD~--~ia~~~a~f~~ 129 (258)
T PRK06190 103 GAAVTGGLELALA----CDI--LIASERARFAD 129 (258)
T ss_pred CEeecHHHHHHHh----CCE--EEEeCCCEEEC
Confidence 555554 444443 355 66666666553
No 418
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=80.12 E-value=1.3 Score=54.58 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=33.2
Q ss_pred cCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc
Q 000086 683 NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2304)
Q Consensus 683 ~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM 721 (2304)
.+.-.-.|.||..|+|.+++|++||+|+.||.|+.|+--
T Consensus 111 TDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 111 TDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred ccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCC
Confidence 333345688999999999999999999999999999743
No 419
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=80.08 E-value=29 Score=42.35 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=60.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh--hh----h---HHHHHHH-HHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--FE----G---ILQAGST-IVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e--~~----g---ilk~ga~-iv~al~~~~vP~i~~I~ 2046 (2304)
.++.++......++++.+.+ ..+-+|+|.-.+ .|+.|.+=. .. + ....... +...+..+.+|+|+.|-
T Consensus 21 Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 100 (255)
T PRK06563 21 NAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQ 100 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEc
Confidence 58899999999999998765 456666665543 377765311 00 0 1111122 22357788999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++.+ |+ ++|.++++++.
T Consensus 101 -G~a~GgG~~lal~c----D~--ria~~~a~f~~ 127 (255)
T PRK06563 101 -GYCLTLGIELMLAA----DI--VVAADNTRFAQ 127 (255)
T ss_pred -CeeecHHHHHHHhC----CE--EEecCCCEEeC
Confidence 34445555555553 66 77777777665
No 420
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=79.75 E-value=5.9 Score=48.48 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=43.7
Q ss_pred EEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 50 SILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 50 kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
||||+|+ |+ +.++.+.+.+.|++++ +.+.+ +. ............+.... .|.+.+.++++
T Consensus 2 ~ILvlGGT~e-gr~la~~L~~~g~~v~--------~s~~t--~~-~~~~~~~~g~~~v~~g~-------l~~~~l~~~l~ 62 (256)
T TIGR00715 2 TVLLMGGTVD-SRAIAKGLIAQGIEIL--------VTVTT--SE-GKHLYPIHQALTVHTGA-------LDPQELREFLK 62 (256)
T ss_pred eEEEEechHH-HHHHHHHHHhCCCeEE--------EEEcc--CC-ccccccccCCceEEECC-------CCHHHHHHHHH
Confidence 7999998 76 9999999999998875 22233 21 11111111112333322 45677889999
Q ss_pred HcCCCEEE
Q 000086 129 MTRVDAVW 136 (2304)
Q Consensus 129 ~~~vDaV~ 136 (2304)
+.++|+|+
T Consensus 63 ~~~i~~VI 70 (256)
T TIGR00715 63 RHSIDILV 70 (256)
T ss_pred hcCCCEEE
Confidence 99999988
No 421
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=79.35 E-value=1.8 Score=49.71 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=37.1
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChH
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1818 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~ 1818 (2304)
.|+|+++.|.|.|+|.+++..||++++.+++.+++.|..
T Consensus 72 kpVia~v~G~a~g~g~~la~a~D~i~a~~~a~~~~~G~~ 110 (177)
T cd07014 72 KPVVASGGGNAASGGYWISTPANYIVANPSTLVGSIGIF 110 (177)
T ss_pred CCEEEEECCchhHHHHHHHHhCCEEEECCCCeEEEechH
Confidence 599999999999999999999999999999999999974
No 422
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=79.26 E-value=5.8 Score=48.32 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=50.9
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|+.+|||+|+-.-|.++++.+.+.|+.++ ++++| +... .. .. ...+.+++ +.|.+.+.++
T Consensus 1 ~~~~IlvlgGT~egr~la~~L~~~g~~v~--------~Svat--~~g~-~~--~~-~~~v~~G~------l~~~~~l~~~ 60 (248)
T PRK08057 1 MMPRILLLGGTSEARALARALAAAGVDIV--------LSLAG--RTGG-PA--DL-PGPVRVGG------FGGAEGLAAY 60 (248)
T ss_pred CCceEEEEechHHHHHHHHHHHhCCCeEE--------EEEcc--CCCC-cc--cC-CceEEECC------CCCHHHHHHH
Confidence 57789999999999999999999998875 55555 3212 11 11 22333332 2378999999
Q ss_pred HHHcCCCEEEe
Q 000086 127 AEMTRVDAVWP 137 (2304)
Q Consensus 127 A~~~~vDaV~p 137 (2304)
++++++++|+-
T Consensus 61 l~~~~i~~VID 71 (248)
T PRK08057 61 LREEGIDLVID 71 (248)
T ss_pred HHHCCCCEEEE
Confidence 99999999993
No 423
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=78.99 E-value=1.5 Score=53.25 Aligned_cols=34 Identities=26% Similarity=0.142 Sum_probs=31.3
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceE
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII 1813 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ 1813 (2304)
.|+|+.|.|.|+|||+.++..||++|+.+++.+.
T Consensus 96 kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~ 129 (249)
T PRK05870 96 LPTIAAVNGAAVGAGLNLALAADVRIAGPKALFD 129 (249)
T ss_pred CCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEe
Confidence 6999999999999999999999999999987543
No 424
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=78.86 E-value=4.7 Score=45.35 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=36.7
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChH
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1818 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~ 1818 (2304)
.|+++++.|.+.++|.+++..||.+++.+++.+++.|+.
T Consensus 58 kpvva~~~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~ 96 (161)
T cd00394 58 KPVIAYVGGQAASAGYYIATAANKIVMAPGTRVGSHGPI 96 (161)
T ss_pred CCEEEEECChhHHHHHHHHhCCCEEEECCCCEEEEeeeE
Confidence 499999999999999999999999999999999999975
No 425
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=78.86 E-value=36 Score=41.21 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=50.8
Q ss_pred ccCHHHHHHHHHHHHHhhcc-C-CCEEEEecCC-CCCCchhhh-h----------hhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1980 VWFPDSATKTAQALMDFNRE-E-LPLFILANWR-GFSGGQRDL-F----------EGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1980 ~~~p~sa~K~a~~i~~~~~~-~-lPLv~l~d~~-Gf~~G~~~e-~----------~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
.+..+-.....++++.+... . ..+|++...+ -|+.|..-. . .........++.++..+..|+|+.|
T Consensus 22 al~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 101 (239)
T PLN02267 22 RLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAV 101 (239)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 47788888888888887654 3 3456554432 377776411 0 1122334556778999999999999
Q ss_pred cCCCcCCchhhhhccc
Q 000086 2046 PMMAELRGGAWVVVDS 2061 (2304)
Q Consensus 2046 ~~~ge~~GGa~vv~~~ 2061 (2304)
- |...+||.-+++.+
T Consensus 102 ~-G~a~GgG~~lalac 116 (239)
T PLN02267 102 T-GHASAAGFILALSH 116 (239)
T ss_pred C-CcchHHHHHHHHHC
Confidence 8 34444455555543
No 426
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=78.76 E-value=1.6 Score=52.70 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=52.6
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |..-+-+.+|... .-+...+.+.+ ....
T Consensus 87 kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~e-A~~~ 165 (243)
T PRK07854 87 VPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQ-ALAT 165 (243)
T ss_pred CCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHHC
Confidence 69999999999999999999999999999875432 2 1122444444321 11112233333 3468
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~L 1865 (2304)
|++|.+++. .++.+.++++.
T Consensus 166 Glv~~v~~~-~~a~~~a~~l~ 185 (243)
T PRK07854 166 GMANRIGTL-ADAQAWAAEIA 185 (243)
T ss_pred CCcccccCH-HHHHHHHHHHH
Confidence 999988642 24444444443
No 427
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=78.61 E-value=23 Score=43.67 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=63.4
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhhh--------hhHHH--HHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF--------EGILQ--AGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e~--------~gilk--~ga~iv~al~~~~vP~i~~I 2045 (2304)
..++++-.....++++.++. -.+-+|+|.-.. -|+.|.+-.. ..... ....++..+..+.+|+|+.|
T Consensus 35 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 114 (273)
T PRK07396 35 NAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMV 114 (273)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEE
Confidence 57889999999999998876 356677777654 3777764210 00011 11235667889999999999
Q ss_pred cCCCcCCc-hhhhhcccccCCccceeecccCcEEEeeCc
Q 000086 2046 PMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2046 ~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
- |-+.| |.-+++. .|+ ++|.++++++.-++
T Consensus 115 ~--G~a~GgG~~lala----cD~--ria~~~a~f~~pe~ 145 (273)
T PRK07396 115 A--GYAIGGGHVLHLV----CDL--TIAADNAIFGQTGP 145 (273)
T ss_pred C--CEEehHHHHHHHh----CCE--EEeeCCcEEecccc
Confidence 8 55555 4444444 466 77777777776443
No 428
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=78.58 E-value=26 Score=42.84 Aligned_cols=95 Identities=21% Similarity=0.242 Sum_probs=60.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhh-h--------hhHH-HHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL-F--------EGIL-QAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e-~--------~gil-k~ga~iv~al~~~~vP~i~~I 2045 (2304)
.++.++-.....++++.++. ..+-+|+|.-.. .|+.|.+-. . .+.- .....++.++..+.+|+|+.|
T Consensus 25 Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 104 (259)
T TIGR01929 25 NAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMV 104 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 47889999999999988865 456677776554 387776421 0 0000 012345677889999999999
Q ss_pred cCCCcCCc-hhhhhcccccCCccceeecccCcEEEee
Q 000086 2046 PMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2046 ~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
- |-+.| |.-+++. .|+ ++|.++++++.-
T Consensus 105 ~--G~a~GgG~~lala----cD~--~ia~~~a~f~~p 133 (259)
T TIGR01929 105 N--GYAIGGGHVLHVV----CDL--TIAAENARFGQT 133 (259)
T ss_pred c--CEEehHHHHHHHh----CCE--EEecCCCEecCc
Confidence 8 55555 5444444 366 666666666553
No 429
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=78.48 E-value=1.6 Score=54.37 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=53.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 113 pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~e-A~~ 191 (296)
T PRK08260 113 LKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQE-ALD 191 (296)
T ss_pred CCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHH-HHH
Confidence 4699999999999999999999999999998764432 1122344444322 00111222222 246
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~ 1864 (2304)
-|++|.+++++ +....+.+|
T Consensus 192 ~GLv~~vv~~~-~l~~~a~~~ 211 (296)
T PRK08260 192 GGLVRSVHPPD-ELLPAARAL 211 (296)
T ss_pred CCCceeecCHH-HHHHHHHHH
Confidence 99999998754 444444444
No 430
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=78.29 E-value=22 Score=43.55 Aligned_cols=94 Identities=23% Similarity=0.233 Sum_probs=64.1
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhhh----------hhhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDL----------FEGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~e----------~~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
..+++.......++++.+....+-+|+|.-.+ .|+.|.+-. ..........++.++..+.+|+|+.|-
T Consensus 28 Nal~~~~~~~l~~~l~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~- 106 (260)
T PRK07659 28 NALDEPMLKELLQALKEVAESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIH- 106 (260)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEec-
Confidence 57889999999999998855567777776543 377774311 122233445667788899999999998
Q ss_pred CCcCCch-hhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GG-a~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.|| .-+++. .|+ .+|.++++++.
T Consensus 107 -G~a~GgG~~lala----cD~--ria~~~a~f~~ 133 (260)
T PRK07659 107 -GPAAGLGLSIALT----ADY--VIADISAKLAM 133 (260)
T ss_pred -CceecHHHHHHHh----CCE--EEEcCCCEEcC
Confidence 555554 444443 477 78888887765
No 431
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=77.73 E-value=2.7 Score=54.74 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=43.7
Q ss_pred eEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 698 LLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 698 vv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
|.-..|+.|+.-.-=+.+..|++. =...|.++.+|+|..+ +++|+.|.+||+|++|+..
T Consensus 62 V~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~ 121 (415)
T PRK11556 62 VQAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPR 121 (415)
T ss_pred eEEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECcH
Confidence 333444555544444455667763 4677999999999999 9999999999999999653
No 432
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=77.60 E-value=3.7 Score=44.69 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=0.0
Q ss_pred eeeCCCceeEEEEccCCCEEcc----CCcEEEEEccccceeeecCCCcEEEEeeC-------------------------
Q 000086 690 LVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQFKMA------------------------- 740 (2304)
Q Consensus 690 l~APmPGkvv~~~V~~Gd~V~~----G~~l~~iEaMKm~~~l~ap~~G~V~~i~~------------------------- 740 (2304)
|.||+.|+++ -+-+.-|.|-+ |+-+++.=. +..|.||.+|+|..+..
T Consensus 1 i~aP~~G~~i-~l~~v~D~vFs~~~~G~G~aI~P~---~~~v~AP~~G~v~~v~~T~HA~gi~~~~G~evLiHiGidTV~ 76 (121)
T TIGR00830 1 IVSPISGEIV-PLDQVPDEVFAEKIVGDGFAILPT---DGKVVAPVDGKIGKIFPTKHAFGIESDSGVEILIHIGIDTVK 76 (121)
T ss_pred CccccCceEE-EhhhCCChHhcccCccceEEEEcC---CCeEEccCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeceee
Q ss_pred -----------CCCccCCCCEEEEEecC
Q 000086 741 -----------EGQAMQAGELIARLDLD 757 (2304)
Q Consensus 741 -----------~G~~v~~G~~La~l~~~ 757 (2304)
+||.|.+||+|+++.++
T Consensus 77 L~G~gF~~~v~~Gd~V~~G~~l~~~D~~ 104 (121)
T TIGR00830 77 LNGEGFTSHVEEGQRVKKGDPLLEFDLK 104 (121)
T ss_pred cCCCceEEEecCCCEEcCCCEEEEEcHH
No 433
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=77.51 E-value=3 Score=50.62 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=38.5
Q ss_pred eeCCCceeEEEEccCCCEEccCCcEEEEEccccc--eeeecCCCcEEEEeeC
Q 000086 691 VAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMC--MPLLSPASGVLQFKMA 740 (2304)
Q Consensus 691 ~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~--~~l~ap~~G~V~~i~~ 740 (2304)
-...+|..-+.+|++||+|++||+|.+ .|-. +-..||.+|+|+.|..
T Consensus 33 ~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R 81 (257)
T PF05896_consen 33 PDDFPGMKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR 81 (257)
T ss_pred CcccCCCCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec
Confidence 356788888999999999999999986 3332 3478999999999855
No 434
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=77.50 E-value=1.7 Score=53.04 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=30.8
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcce
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI 1812 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i 1812 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+
T Consensus 101 kPvIaav~G~a~GgG~~lala~D~ria~~~a~f 133 (262)
T PRK07468 101 KPLIGRIQGQAFGGGVGLISVCDVAIAVSGARF 133 (262)
T ss_pred CCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEE
Confidence 699999999999999999999999999998653
No 435
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=77.32 E-value=2.1 Score=55.42 Aligned_cols=86 Identities=20% Similarity=0.196 Sum_probs=59.6
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEec---C-hHHHHHhhcc---cccccccccCcceeecccC
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT---G-FSALNKLLGR---EVYSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~lt---G-~~al~~~lG~---~vy~s~~~lGG~~i~~~nG 1845 (2304)
.|+|+.+-|.|+|||..++..||++|+++++. |+|. | .-.+.++.|. .+.-+...++|.+ ...-|
T Consensus 139 KPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~~L~LTG~~i~a~e-A~~~G 217 (407)
T PLN02851 139 KPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGEYLALTGQKLNGVE-MIACG 217 (407)
T ss_pred CCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHHHHHHhCCcCCHHH-HHHCC
Confidence 69999999999999999999999999998854 5552 2 1223443332 2222344555555 35699
Q ss_pred ceEEEecCcHHHHHHHHHHHhcC
Q 000086 1846 VVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
+++.+++++. +..+..+|.-+
T Consensus 218 La~~~v~~~~--l~~l~~~l~~~ 238 (407)
T PLN02851 218 LATHYCLNAR--LPLIEERLGKL 238 (407)
T ss_pred CceeecCHhh--HHHHHHHHHhh
Confidence 9999997654 36677777654
No 436
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=77.24 E-value=3.5 Score=52.79 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=40.6
Q ss_pred eeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 697 KLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 697 kvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
.+.-..|+.|+.-..=..-+.+++-+ +..|.|+.+|.|..+ +++|+.|.+||+|+.|+.
T Consensus 35 ~v~~~~v~~~~~~~~i~~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 35 TYQTLIVRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred ceEEEEEEeeeeEEEEEEEEEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 34444555554332222344444433 448999999999999 999999999999999953
No 437
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=77.02 E-value=2.5 Score=53.09 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=31.8
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|+||..|.|..+.+++|+.|.+|++++.|.-
T Consensus 204 ~~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 237 (334)
T TIGR00998 204 RTVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVP 237 (334)
T ss_pred CcEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEc
Confidence 4789999999999999999999999999999864
No 438
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=76.48 E-value=1.8 Score=54.94 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=34.6
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF 1817 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~ 1817 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+++.-.
T Consensus 101 kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~ 138 (342)
T PRK05617 101 KPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPET 138 (342)
T ss_pred CCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCcc
Confidence 69999999999999999999999999999988776553
No 439
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=76.34 E-value=7.9 Score=51.02 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=31.1
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
.+.|+||--|+|.++.|++||.|..|++|+++|
T Consensus 612 E~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 612 ENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred ccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 467999999999999999999999999999986
No 440
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=76.28 E-value=2 Score=52.02 Aligned_cols=33 Identities=15% Similarity=0.042 Sum_probs=30.8
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcce
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI 1812 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i 1812 (2304)
.|+|+.|.|.|+|+|..++..||++|+.+++.+
T Consensus 90 kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f 122 (248)
T PRK06072 90 KIYISAINGVTAGACIGIALSTDFKFASRDVKF 122 (248)
T ss_pred CCEEEEECCeeehHHHHHHHhCCEEEEcCCCEE
Confidence 699999999999999999999999999998753
No 441
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=76.17 E-value=39 Score=41.51 Aligned_cols=95 Identities=18% Similarity=0.105 Sum_probs=57.8
Q ss_pred CccC-HHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh-hh-h-------------hHHH-HHHHHHHHHHcCCC
Q 000086 1979 QVWF-PDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF-E-------------GILQ-AGSTIVENLRTYKQ 2039 (2304)
Q Consensus 1979 g~~~-p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~-e~-~-------------gilk-~ga~iv~al~~~~v 2039 (2304)
..++ ++-.....++++.++. ..+-+|+|.-.. .|+.|..= +. . ..+. ....++..+..+.+
T Consensus 25 Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 104 (266)
T PRK09245 25 NALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEV 104 (266)
T ss_pred cCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCC
Confidence 4676 4677778888888765 567777776543 37777531 11 0 0111 12346678889999
Q ss_pred CEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2040 PVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2040 P~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|+|+.|- |...+||.-+++.+ |+ ++|.++++++.
T Consensus 105 pvIaav~-G~a~GgG~~lalac----D~--ria~~~a~f~~ 138 (266)
T PRK09245 105 PVIAAVN-GPAIGAGCDLACMC----DI--RIASETARFAE 138 (266)
T ss_pred CEEEEEC-CEeecHHHHHHHhC----CE--EEecCCCEEcc
Confidence 9999998 33444455555543 55 56666655554
No 442
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=76.12 E-value=3.4 Score=46.60 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=35.7
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChH
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1818 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~ 1818 (2304)
.|+++++.|.|.|+|++++..||++++.+++.+++..+.
T Consensus 59 ~pvi~~v~g~a~s~g~~ia~a~d~~~~~~~a~~~~~~~~ 97 (160)
T cd07016 59 GKVTVKIDGLAASAASVIAMAGDEVEMPPNAMLMIHNPS 97 (160)
T ss_pred CCEEEEEcchHHhHHHHHHhcCCeEEECCCcEEEEECCc
Confidence 499999999999999999999999999999998887664
No 443
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=76.06 E-value=3.4 Score=53.28 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=44.2
Q ss_pred EEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 700 RYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 700 ~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
-..|+.++.-..-.....|++. .+..|.++.+|+|..+ +++|+.|++||+|++|+..
T Consensus 40 v~~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 40 VVTVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEEEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 3455556544444566777764 4679999999999998 9999999999999999543
No 444
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=75.78 E-value=1.8 Score=53.28 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=23.0
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
.|.++..|+|.+++|++||+|++||+|++|+
T Consensus 3 ~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD 33 (305)
T PF00529_consen 3 IVQSLVGGIVTEILVKEGQRVKKGQVLARLD 33 (305)
T ss_dssp EE--SS-EEEEEE-S-TTEEE-TTSECEEE-
T ss_pred EEeCCCCeEEEEEEccCcCEEeCCCEEEEEE
Confidence 5789999999999999999999999999996
No 445
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=75.38 E-value=2.6 Score=55.60 Aligned_cols=31 Identities=3% Similarity=0.103 Sum_probs=26.8
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
.|.++..|.|.+++|++||+|++||+|+.|+
T Consensus 61 ~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld 91 (457)
T TIGR01000 61 KIQSTSNNAIKENYLKENKFVKKGDLLVVYD 91 (457)
T ss_pred EEEcCCCcEEEEEEcCCCCEecCCCEEEEEC
Confidence 5788888999999999999999998888884
No 446
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=75.32 E-value=1.6e+02 Score=38.77 Aligned_cols=82 Identities=15% Similarity=0.285 Sum_probs=51.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhh--hh----hh-------HHHHHHHHHHHHHcCCCCEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD--LF----EG-------ILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~--e~----~g-------ilk~ga~iv~al~~~~vP~i~ 2043 (2304)
.++..+-.....++++.+.. ..+-+|+|.-. +.|..|.+= +. .+ ..+....+.+.+..+.+|+|+
T Consensus 59 NALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvIA 138 (401)
T PLN02157 59 NALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVA 138 (401)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 58899999999999988765 56666766543 247766531 11 01 111122345678899999999
Q ss_pred EEcCCCcCCchhhhhccc
Q 000086 2044 YIPMMAELRGGAWVVVDS 2061 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~ 2061 (2304)
.|- |-..+||.-+++.+
T Consensus 139 ~v~-G~a~GGG~~Lal~c 155 (401)
T PLN02157 139 ILN-GVTMGGGTGVSIPG 155 (401)
T ss_pred EEe-CeEeehhHHHHHhC
Confidence 888 34444555555544
No 447
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=74.94 E-value=35 Score=42.16 Aligned_cols=94 Identities=19% Similarity=0.231 Sum_probs=59.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh-------------h---hHHHHHHHHHHHHHcCCCC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-------------E---GILQAGSTIVENLRTYKQP 2040 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~-------------~---gilk~ga~iv~al~~~~vP 2040 (2304)
.++..+-.....++++.+++ ..+-+|+|.-.. .|+.|..-.. . ...+....++.++..+.+|
T Consensus 32 Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 111 (276)
T PRK05864 32 NSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQP 111 (276)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCC
Confidence 47888888889999998865 456677776543 4776653110 0 0112234567788899999
Q ss_pred EEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEE
Q 000086 2041 VFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGN 2079 (2304)
Q Consensus 2041 ~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~g 2079 (2304)
+|+.|- |...+||.-+++.+ |+ .+|.++++++
T Consensus 112 vIaav~-G~a~GgG~~Lalac----D~--ria~~~a~f~ 143 (276)
T PRK05864 112 VIAAVN-GPAIGGGLCLALAA----DI--RVASSSAYFR 143 (276)
T ss_pred EEEEEC-CEeehhHHHHHHhC----CE--EEeeCCCEec
Confidence 999988 34444455555543 55 6666666554
No 448
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=74.87 E-value=3.9 Score=52.78 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=46.4
Q ss_pred eEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 698 LLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 698 vv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
|.-..|+.|+....-+..+.|++-+ +..|.++.+|+|..+ +.+|+.|++||+|++|+..
T Consensus 36 V~v~~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 36 VGVVTLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred eEEEEeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 3334566666555666677777654 677999999999999 9999999999999999643
No 449
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=74.79 E-value=81 Score=41.02 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=57.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh-h-h------hHHH---HHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F-E------GILQ---AGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e-~-~------gilk---~ga~iv~al~~~~vP~i~~I 2045 (2304)
.++.........++++.+.. ..+-+|+|.-.+ .|+.|..=. . . .... ....++..+..++.|+|+.|
T Consensus 33 Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV 112 (379)
T PLN02874 33 NVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALV 112 (379)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 47888999999999998865 567788776543 477776311 0 0 1111 11233567888999999999
Q ss_pred cCCCcCCchhhhhcccccCCccceeecccCcEEE
Q 000086 2046 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGN 2079 (2304)
Q Consensus 2046 ~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~g 2079 (2304)
- |...+||.-+++.+ |+ .+|.++|+++
T Consensus 113 ~-G~a~GgG~~Lalac----D~--ria~~~a~f~ 139 (379)
T PLN02874 113 H-GLVMGGGAGLMVPM----KF--RVVTEKTVFA 139 (379)
T ss_pred c-CeEEecHHHHHHhC----Ce--EEEeCCeEEe
Confidence 8 34444455555543 44 4554444443
No 450
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=74.69 E-value=2.3 Score=51.83 Aligned_cols=73 Identities=18% Similarity=0.280 Sum_probs=49.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...|.+.+|... .-+...+++.+ ...
T Consensus 98 ~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~e-A~~ 176 (260)
T PRK07659 98 PKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATE-ALD 176 (260)
T ss_pred CCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHH-HHH
Confidence 36999999999999999999999999999987533 32 2233445555432 11223333333 347
Q ss_pred cCceEEEec
Q 000086 1844 NGVVHLTVS 1852 (2304)
Q Consensus 1844 nGv~d~~v~ 1852 (2304)
-|++|.+++
T Consensus 177 ~Glv~~vv~ 185 (260)
T PRK07659 177 LGLIDEVIG 185 (260)
T ss_pred cCChHHHhh
Confidence 899999883
No 451
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=74.45 E-value=2.5 Score=50.62 Aligned_cols=88 Identities=14% Similarity=0.028 Sum_probs=55.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecC-cceEe-------c-Ch---HHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIIL-------T-GF---SALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~l-------t-G~---~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|+|..++..||++|+.++ +.+.+ . ++ ..+.+.+|... .-+...+.+.+ ..
T Consensus 91 ~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~e-A~ 169 (229)
T PRK06213 91 PKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEE-AV 169 (229)
T ss_pred CCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHH-HH
Confidence 3699999999999999999999999999998 65433 1 11 11223333221 11122233222 24
Q ss_pred ccCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
..|++|.++++ .+..+.+.+|..-+
T Consensus 170 ~~Glv~~vv~~-~~l~~~a~~~a~~l 194 (229)
T PRK06213 170 AAGFLDEVVPP-EQLLARAQAAAREL 194 (229)
T ss_pred HCCCceeccCh-HHHHHHHHHHHHHH
Confidence 68999999964 45666666665443
No 452
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=74.40 E-value=3.8 Score=52.07 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=37.9
Q ss_pred cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 704 SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 704 ~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
..+..+...+.++ |+ -...|.++.+|+|..+ +++|+.|.+||+|++|+..
T Consensus 32 ~~~~~~~t~~~~v--~~--~~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 32 RTDSAPSTDDAYI--DA--DVVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred ccCceEecCCeEE--Ee--eeEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence 3344444444333 43 2678999999999999 9999999999999999644
No 453
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=74.39 E-value=2.7 Score=50.51 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=54.4
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHH----------------------HH-hhcccccccccccC
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSAL----------------------NK-LLGREVYSSHMQLG 1836 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al----------------------~~-~lG~~vy~s~~~lG 1836 (2304)
-|.|+.|-||.+|+||.+..|+|+|++.+++ -|.|-+.-| +- +.|+.+
T Consensus 108 Kplia~vNGPAIGlgasil~lcD~V~A~Dka-~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kl-------- 178 (266)
T KOG0016|consen 108 KPLVALVNGPAIGLGASILPLCDYVWASDKA-WFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKL-------- 178 (266)
T ss_pred CCEEEEecCCccchhhHHhhhhheEEeccce-EEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcc--------
Confidence 4999999999999999999999999998543 333332211 11 123333
Q ss_pred cceeecccCceEEEecCcH---HHHHHHHHHHhc
Q 000086 1837 GPKIMATNGVVHLTVSDDL---EGISAILKWLSY 1867 (2304)
Q Consensus 1837 G~~i~~~nGv~d~~v~dd~---~~~~~i~~~Lsy 1867 (2304)
.++-+..+|+++-+.++.. ++..+|+++.++
T Consensus 179 tA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l 212 (266)
T KOG0016|consen 179 TAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKL 212 (266)
T ss_pred cHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcC
Confidence 1333456899998887643 777888888773
No 454
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=74.24 E-value=3.1 Score=54.05 Aligned_cols=35 Identities=11% Similarity=0.354 Sum_probs=32.1
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
-...|.||..|+|.+++|++||.|+.||+|++||.
T Consensus 86 ~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~ 120 (418)
T PTZ00144 86 VSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDT 120 (418)
T ss_pred eEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcC
Confidence 34679999999999999999999999999999974
No 455
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=74.15 E-value=2.7 Score=54.41 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=30.8
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
-+.|+||+.|.|....+++|+.|.+|++++.|-
T Consensus 215 ~t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv 247 (390)
T PRK15136 215 RTKIVSPMTGYVSRRSVQVGAQISPTTPLMAVV 247 (390)
T ss_pred CCEEECCCCeEEEEEecCCCCEeCCCCeEEEEE
Confidence 368999999999999999999999999999884
No 456
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=74.03 E-value=17 Score=43.81 Aligned_cols=126 Identities=18% Similarity=0.157 Sum_probs=91.1
Q ss_pred CCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHH--HcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCcc
Q 000086 1639 PSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLAC--AKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFN 1716 (2304)
Q Consensus 1639 ~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~--~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~ 1716 (2304)
.+||.+.|+.+.- .|-+|-.++-...++..-+. ..|-|+|.|.|.-|=+++.-||++-+.+
T Consensus 27 ~~~~~iaVvg~~~---~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~-------------- 89 (234)
T PF06833_consen 27 EDGRFIAVVGDAN---HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQ-------------- 89 (234)
T ss_pred cCCcEEEEEecCC---CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHH--------------
Confidence 3678888887665 99999999999988775444 5689999999999999998898876521
Q ss_pred ccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceEEEEEcCcccchh-h
Q 000086 1717 YVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIG-A 1795 (2304)
Q Consensus 1717 ~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~g-A 1795 (2304)
.++.+.+. +...|-.| .|+|++|-|.++.|+ =
T Consensus 90 -------alAhla~a----------------------------~a~AR~~G------------HpvI~Lv~G~A~SGaFL 122 (234)
T PF06833_consen 90 -------ALAHLAKA----------------------------YALARLAG------------HPVIGLVYGKAMSGAFL 122 (234)
T ss_pred -------HHHHHHHH----------------------------HHHHHHcC------------CCeEEEEecccccHHHH
Confidence 11111111 11223333 499999999999874 1
Q ss_pred hhhcccCEEEEecCcceEecChHHHHHhhcccc
Q 000086 1796 YLARLGMRCIQRLDQPIILTGFSALNKLLGREV 1828 (2304)
Q Consensus 1796 yl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~v 1828 (2304)
.....+|++++-++..|=.=|.++.-++|.+.+
T Consensus 123 A~GlqA~rl~AL~ga~i~vM~~~s~ARVTk~~v 155 (234)
T PF06833_consen 123 AHGLQANRLIALPGAMIHVMGKPSAARVTKRPV 155 (234)
T ss_pred HHHHHhcchhcCCCCeeecCChHHhHHHhhcCH
Confidence 234568999999988887778888777777655
No 457
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=73.69 E-value=58 Score=40.83 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=66.5
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh-h---------------------------------h
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF-E---------------------------------G 2022 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~-~---------------------------------g 2022 (2304)
.++.+.......++++.++. ..+-+|+|.-. +.|+.|..-.. . .
T Consensus 32 Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (302)
T PRK08272 32 NAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQ 111 (302)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccccccccccchhhHH
Confidence 58889999999999998875 56777777543 34777653210 0 0
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCc
Q 000086 2023 ILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2023 ilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
.++....++.++..+.+|+|+.|- |.+.+||.-+++. .|+ ++|.++|++|.-+.
T Consensus 112 ~~~~~~~~~~~l~~~~kPvIAaV~-G~a~GgG~~lala----cD~--~ias~~a~f~~pe~ 165 (302)
T PRK08272 112 MMSRFVRGFMSLWHAHKPTVAKVH-GYCVAGGTDIALH----CDQ--VIAADDAKIGYPPT 165 (302)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEc-cEeehhhHHHHHh----CCE--EEEeCCCEecCcch
Confidence 122334567788899999999998 3445556555554 477 88888888876554
No 458
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=73.67 E-value=3.5 Score=51.82 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=30.6
Q ss_pred ceeeecCCC---cEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 724 CMPLLSPAS---GVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 724 ~~~l~ap~~---G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
...|.++.+ |+|..+ |++|+.|.+||+|++|+..
T Consensus 13 ~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 13 VVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred eEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCc
Confidence 456789999 999999 9999999999999999765
No 459
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=73.07 E-value=11 Score=47.02 Aligned_cols=70 Identities=24% Similarity=0.287 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCC-cEEEeecCCCCCc------
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY-PAMIKASWGGGGK------ 244 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGy-PVVIKPs~GgGGk------ 244 (2304)
.-+.+..++++.|+.+|+... ..|+||+.+.++++|- -+|||+-.-.||+
T Consensus 26 hey~~~~ll~~~Gv~vp~g~v-----------------------A~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~ 82 (434)
T KOG2799|consen 26 HEYRSAALLRKYGINVPLGYV-----------------------AKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFD 82 (434)
T ss_pred HHHHHHHHHHHcCCCCCCCcc-----------------------cCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcC
Confidence 345568999999999999765 7899999999999974 5999997644443
Q ss_pred -----CeEEECCHHHHHHHHHHHHh
Q 000086 245 -----GIRKVHNDDEVRALFKQVQG 264 (2304)
Q Consensus 245 -----GIr~V~s~eEL~~a~~~~~~ 264 (2304)
||.+|.+++|.++.-.++.+
T Consensus 83 SglkgGV~iVf~p~Eak~va~qmiG 107 (434)
T KOG2799|consen 83 SGLKGGVKIVFSPQEAKAVASQMIG 107 (434)
T ss_pred cCcCCceEEEeChHHHHHHHHHhhc
Confidence 58999999998888777753
No 460
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=72.56 E-value=3 Score=54.67 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=35.9
Q ss_pred ceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 696 CKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 696 Gkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
|.--+.+|++||+|++||+|++-+. ....++.||.+|+|+.|
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~~-~~~~~~ha~vsG~V~~i 81 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKADG-FVSAPIHAPTSGTVVAI 81 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCCC-cceeeeecCCCeEEEEe
Confidence 4445689999999999999999943 35789999999999988
No 461
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=72.48 E-value=81 Score=38.60 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=61.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh-h--------hhHHH-------HHHHHHHHHHcCCCC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F--------EGILQ-------AGSTIVENLRTYKQP 2040 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e-~--------~gilk-------~ga~iv~al~~~~vP 2040 (2304)
..+++.-.....++++.++. ..+-+|+|.-.+ .|+.|..-. . ....+ ....++..+..+.+|
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp 104 (262)
T PRK07509 25 NALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVP 104 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCC
Confidence 58889999999999998876 356667775443 277765311 0 01111 112345566789999
Q ss_pred EEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2041 VFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2041 ~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
+|+.|- |...+||.-+++. .|+ ++|.++++++.-+
T Consensus 105 vIaav~-G~a~GgG~~lala----cD~--~ia~~~a~f~~pe 139 (262)
T PRK07509 105 VIAALE-GVCFGGGLQIALG----ADI--RIAAPDTKLSIME 139 (262)
T ss_pred EEEEEC-CeeecchHHHHHh----CCE--EEecCCCEeecch
Confidence 999998 3344445555554 366 7777777776643
No 462
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=72.31 E-value=4 Score=52.89 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=57.3
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEec---C-hHHHHHhhcc---cccccccccCcceeecccC
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT---G-FSALNKLLGR---EVYSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~lt---G-~~al~~~lG~---~vy~s~~~lGG~~i~~~nG 1845 (2304)
.|+|+.|.|.|+|||.-++..||++|+.+++. |+|. | ..-|.+..|. ++.-+...+.+.+ ...-|
T Consensus 134 kPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~L~LTG~~i~A~e-A~~~G 212 (401)
T PLN02157 134 KPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAE-MLACG 212 (401)
T ss_pred CCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHHHHHHcCCcCCHHH-HHHcC
Confidence 69999999999999999999999999998865 4442 2 2234555443 1111223333333 34699
Q ss_pred ceEEEecCcHHHHHHHHHHHhcC
Q 000086 1846 VVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
+++.++++++ +..+..++.-+
T Consensus 213 Lv~~vVp~~~--l~~~~~~~~~i 233 (401)
T PLN02157 213 LATHYIRSEE--IPVMEEQLKKL 233 (401)
T ss_pred CceEEeCHhH--HHHHHHHHHHH
Confidence 9999997653 35555666544
No 463
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.40 E-value=7.4 Score=49.30 Aligned_cols=59 Identities=37% Similarity=0.581 Sum_probs=40.6
Q ss_pred ceeeEEEeeccccccccccccccccccccccccccccc-----eEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh
Q 000086 1743 ETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKET-----FTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF 1817 (2304)
Q Consensus 1743 e~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~i-----ptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~ 1817 (2304)
+++++..+-+|+.+. +-++|+++. -.||=+-|.+-||||..+ ++..++||+|-|
T Consensus 216 ~vi~VmDasiGQaae--------------~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSa------VaaTksPIiFIG- 274 (483)
T KOG0780|consen 216 EIIFVMDASIGQAAE--------------AQARAFKETVDVGAVILTKLDGHAKGGGALSA------VAATKSPIIFIG- 274 (483)
T ss_pred eEEEEEeccccHhHH--------------HHHHHHHHhhccceEEEEecccCCCCCceeee------hhhhCCCEEEEe-
Confidence 466788877886322 234444432 356667799999998765 677889999999
Q ss_pred HHHHHhhcccc
Q 000086 1818 SALNKLLGREV 1828 (2304)
Q Consensus 1818 ~al~~~lG~~v 1828 (2304)
+|+-+
T Consensus 275 ------tGEhm 279 (483)
T KOG0780|consen 275 ------TGEHM 279 (483)
T ss_pred ------cCccc
Confidence 67744
No 464
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=70.58 E-value=49 Score=40.54 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=57.2
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhhh------hhHHHHHHHHHHHHHcCCCCEEEEEcCCC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF------EGILQAGSTIVENLRTYKQPVFVYIPMMA 2049 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e~------~gilk~ga~iv~al~~~~vP~i~~I~~~g 2049 (2304)
.+++++-..-..++++.+++ ..+-+|+|.-.. .|+.|.+-.. .+.....-..+..+..+..|+|+.|- |
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~--G 103 (259)
T PRK06494 26 NALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVN--G 103 (259)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEEC--C
Confidence 47888889999999998865 456777776544 4888764221 00000111113344578899999988 5
Q ss_pred cCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2050 ELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2050 e~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
-+.| |.-+++. .|+ .+|.++++++.
T Consensus 104 ~a~GgG~~lala----cD~--ria~~~a~f~~ 129 (259)
T PRK06494 104 VAMGGGFELALA----CDL--IVAAENATFAL 129 (259)
T ss_pred EEecHHHHHHHh----CCE--EEEeCCCEEeC
Confidence 5545 5444444 355 66666666655
No 465
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=70.26 E-value=5.5 Score=55.44 Aligned_cols=84 Identities=20% Similarity=0.108 Sum_probs=56.1
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||.-++..||++|+.+++.+++. |..-+-..+|... .-+...+.+. -...-
T Consensus 103 kPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~-eA~~~ 181 (714)
T TIGR02437 103 VPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAE-DALKV 181 (714)
T ss_pred CCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHH-HHHHC
Confidence 699999999999999999999999999998765441 2233444455322 1111122222 23479
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~L 1865 (2304)
|++|.++++ .+..+.+++|.
T Consensus 182 GLvd~vv~~-~~l~~~a~~~a 201 (714)
T TIGR02437 182 GAVDAVVTA-DKLGAAALQLL 201 (714)
T ss_pred CCCcEeeCh-hHHHHHHHHHH
Confidence 999999964 44556666665
No 466
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=69.76 E-value=8.9 Score=47.40 Aligned_cols=67 Identities=18% Similarity=0.294 Sum_probs=52.5
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcE--EEEEccc--cceeeecCCCcEEEEeeCCCCccCCCCEEEEEe
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPY--AEVEVMK--MCMPLLSPASGVLQFKMAEGQAMQAGELIARLD 755 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l--~~iEaMK--m~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~ 755 (2304)
+..++||..| ++...++.||.|++||++ ..+-..= -..+++||.+|+|.. ..+.-.|..|+.|+.+.
T Consensus 220 ~~~~~a~~~G-~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~-~~~~~~v~~G~~l~~v~ 290 (292)
T PF04952_consen 220 PEWVRAPAGG-LFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIF-IRESPYVEQGDALAKVA 290 (292)
T ss_dssp CCEEESSSSE-EEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEES-ECTSSECTTTEEEEEEE
T ss_pred ceeecCCccE-EEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEE-eCcccccCCCCeEEEEe
Confidence 4679999999 558899999999999999 5543321 234799999998743 56777899999998874
No 467
>PLN02921 naphthoate synthase
Probab=69.66 E-value=37 Score=43.17 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=64.6
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhh-hh-------hHHHH--HHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL-FE-------GILQA--GSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e-~~-------gilk~--ga~iv~al~~~~vP~i~~I 2045 (2304)
..+.+.-.....++++.++. ..+-+|+|.-.. .|+.|..-. .. ...+. ...+..++..+.+|+|+.|
T Consensus 89 Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaV 168 (327)
T PLN02921 89 NAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMV 168 (327)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 58889999999999998865 567788887654 377776421 10 00111 1235667888999999999
Q ss_pred cCCCcCCc-hhhhhcccccCCccceeecccCcEEEeeCc
Q 000086 2046 PMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2046 ~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
- |-+.| |.-+++. .|+ ++|.++++++.-++
T Consensus 169 n--G~a~GGG~~Lala----cD~--riA~~~A~f~~pe~ 199 (327)
T PLN02921 169 A--GYAVGGGHILHMV----CDL--TIAADNAVFGQTGP 199 (327)
T ss_pred C--CEEecHHHHHHHh----CCE--EEEeCCCEEeCccc
Confidence 8 55555 5444444 477 78888888877544
No 468
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=69.08 E-value=9.1 Score=43.29 Aligned_cols=72 Identities=15% Similarity=0.245 Sum_probs=0.0
Q ss_pred cCCCCCeeeeCCCceeEEEEccCCCEEcc---CCcEEEEEccccceeeecCCCcEEEEe---------------------
Q 000086 683 NDHDPSKLVAETPCKLLRYLVSDGSHIDA---DTPYAEVEVMKMCMPLLSPASGVLQFK--------------------- 738 (2304)
Q Consensus 683 ~~~dp~~l~APmPGkvv~~~V~~Gd~V~~---G~~l~~iEaMKm~~~l~ap~~G~V~~i--------------------- 738 (2304)
.......|.||+.|+|+.+.=-+-....+ ||-+|+.=+- ..|.||.+|+|..+
T Consensus 1 ~~~~~~~i~sP~~G~vv~Ls~VpD~vFs~k~mGdGiAI~P~~---g~vvAPvdG~v~~iFpTkHAigi~t~~GvEiLiHi 77 (156)
T COG2190 1 KDSKKEEIYSPLSGEVVPLSDVPDPVFSEKMVGDGVAIKPSE---GEVVAPVDGTVVLIFPTKHAIGIETDEGVEILIHI 77 (156)
T ss_pred CCcccEEEEccCCceEEEchhCCchHhhcccccCcEEEecCC---CeEEeccCcEEEEEeeCCcEEEEEcCCCcEEEEEe
Q ss_pred ---------------eCCCCccCCCCEEEEEecC
Q 000086 739 ---------------MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 739 ---------------~~~G~~v~~G~~La~l~~~ 757 (2304)
+++||.|.+||+|+++.++
T Consensus 78 GiDTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fDl~ 111 (156)
T COG2190 78 GIDTVKLNGEGFESLVKEGDKVKAGDPLLEFDLD 111 (156)
T ss_pred ceeeEEECCcceEEEeeCCCEEccCCEEEEECHH
No 469
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=68.90 E-value=5.7 Score=55.36 Aligned_cols=85 Identities=20% Similarity=0.192 Sum_probs=55.1
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++. |..-+-+.+|... .-+...+.+.+ ...
T Consensus 102 ~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~e-A~~ 180 (715)
T PRK11730 102 PVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAED-ALK 180 (715)
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHH-HHH
Confidence 3699999999999999999999999999998765442 2222444444322 00111122222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +....+++|.
T Consensus 181 ~GLv~~vv~~~-~l~~~a~~~a 201 (715)
T PRK11730 181 VGAVDAVVAPE-KLQEAALALL 201 (715)
T ss_pred CCCCeEecCHH-HHHHHHHHHH
Confidence 89999999754 4445555554
No 470
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=68.70 E-value=4 Score=56.25 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=39.3
Q ss_pred CCeeeeCCC---ceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 687 PSKLVAETP---CKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 687 p~~l~APmP---Gkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
|..|.=|+. |.--+.+|++||+|.+||+|++-+.. +..+|.||.+|+|+.|
T Consensus 34 p~~~~ipl~qhiG~~~~~~V~~GD~V~~GQ~i~~~~~~-~s~~vhApvSG~V~~I 87 (695)
T PRK05035 34 PQRLVIPLKQHIGAEGELCVKVGDRVLKGQPLTQGDGR-MSLPVHAPTSGTVVAI 87 (695)
T ss_pred CCEEEEECccCCCCCCcceeCcCCEEcCCCEeeecCCC-ceeEEeCCCCeEEeee
Confidence 445555553 34456899999999999999976532 5689999999999887
No 471
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=68.65 E-value=8 Score=50.41 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=36.9
Q ss_pred eeccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc
Q 000086 678 TCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2304)
Q Consensus 678 t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM 721 (2304)
-+.++...-...|.||..|+|.++++++||.|..|++|++||..
T Consensus 36 l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~ 79 (407)
T PRK05704 36 LVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEG 79 (407)
T ss_pred EEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 33444455567899999999999999999999999999999854
No 472
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=68.08 E-value=4.2 Score=51.02 Aligned_cols=33 Identities=15% Similarity=0.366 Sum_probs=30.1
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 725 ~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
..|.++.+|+|..+ +++|+.|.+||+|++|+..
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~ 81 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQP 81 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcH
Confidence 56899999999999 9999999999999999654
No 473
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=67.94 E-value=6.1 Score=52.20 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=29.7
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 725 ~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
..|.++.+|+|..+ |++|+.|++||+|++|+..
T Consensus 60 ~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 60 SKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred EEEEcCCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence 46789999999999 9999999999999999654
No 474
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=67.75 E-value=96 Score=38.09 Aligned_cols=94 Identities=15% Similarity=0.131 Sum_probs=57.3
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh-h-----hHHH---H-HHHH--HHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-E-----GILQ---A-GSTI--VENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~-~-----gilk---~-ga~i--v~al~~~~vP~i~~ 2044 (2304)
.++.........++++.++. ..+-+|+|.-.. -|+.|..-.. . .... . ...+ +..+..+..|+|+.
T Consensus 27 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaa 106 (263)
T PRK07799 27 NALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAA 106 (263)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEEEE
Confidence 58899999999999998876 456667665433 3777764211 0 0000 0 0111 22356789999999
Q ss_pred EcCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |-+.| |.-+++. .|+ ++|.++++++.
T Consensus 107 v~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 135 (263)
T PRK07799 107 VE--GPAIAGGTEILQG----TDI--RVAGESAKFGI 135 (263)
T ss_pred EC--CeEeccHHHHHHh----CCE--EEecCCCEecC
Confidence 98 55555 4444444 366 77777776655
No 475
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=67.72 E-value=18 Score=46.88 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=30.6
Q ss_pred cCCCCCeeeeCCCceeEEE-------EccCCCEEccCCcEEEE
Q 000086 683 NDHDPSKLVAETPCKLLRY-------LVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 683 ~~~dp~~l~APmPGkvv~~-------~V~~Gd~V~~G~~l~~i 718 (2304)
+...|..|.|-..|.|.++ .|++||.|++||.|+.=
T Consensus 182 ~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIsG 224 (382)
T TIGR02876 182 KKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLISG 224 (382)
T ss_pred ccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEEe
Confidence 3456889999999999996 78899999999999753
No 476
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=67.45 E-value=4.1 Score=50.70 Aligned_cols=40 Identities=28% Similarity=0.422 Sum_probs=27.8
Q ss_pred EEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 715 YAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 715 l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
-+.+++ =+..|.+|.+|+| .+ +++|+.|.+||+|++|+..
T Consensus 14 ~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 14 SGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp EEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-H
T ss_pred EEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEECh
Confidence 345554 3568999999999 77 9999999999999999765
No 477
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=67.38 E-value=4.3 Score=51.61 Aligned_cols=40 Identities=15% Similarity=0.051 Sum_probs=36.0
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChH
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1818 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~ 1818 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+...+
T Consensus 124 pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~r 163 (360)
T TIGR03200 124 DKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPK 163 (360)
T ss_pred CCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhc
Confidence 4699999999999999999999999999999888876643
No 478
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=67.30 E-value=79 Score=38.94 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=61.6
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh-hhh--------------HHH----HHHHHHHHHHcC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-FEG--------------ILQ----AGSTIVENLRTY 2037 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e-~~g--------------ilk----~ga~iv~al~~~ 2037 (2304)
.+++.+......++++.... ..+-+|+|.-.+ .|+.|..-. ... ... ....++.++..+
T Consensus 28 Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (272)
T PRK06210 28 NAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTAL 107 (272)
T ss_pred cCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHhC
Confidence 57899999999999998865 456667776543 377776421 100 000 112345678889
Q ss_pred CCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2038 KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2038 ~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
++|+|+.|- |...+||.-+++. .|+ ++|.++++++.
T Consensus 108 ~kPvIaav~-G~a~GgG~~lala----~D~--~ia~~~a~f~~ 143 (272)
T PRK06210 108 RKPVIAAIN-GACAGIGLTHALM----CDV--RFAADGAKFTT 143 (272)
T ss_pred CCCEEEEEC-CeeehHHHHHHHh----CCE--EEEeCCCEEec
Confidence 999999998 3444445555554 477 88888888775
No 479
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.07 E-value=5.7e+02 Score=37.42 Aligned_cols=266 Identities=14% Similarity=0.136 Sum_probs=125.5
Q ss_pred HHHHHHhcCCCCChHHHHHHHHhhcCCCCCchhHH-HHHHHHhhcCCChhHHHHHHHHhhhhhhcccccCCCCchhhHHH
Q 000086 794 NAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQW-QECMAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRG 872 (2304)
Q Consensus 794 ~~l~~il~GYd~~~~~~v~~l~~~L~dp~LP~~e~-~~~ls~Ls~RiP~~L~~~i~~~~~~~~~~~~~~~~~f~~~~~~~ 872 (2304)
+..++++.+ .-.+.+.-|+++..+|..++-|. .-+|+++..-++..+..-|..+..-+..-.+.....-....++
T Consensus 106 eia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~r- 181 (1075)
T KOG2171|consen 106 EIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVR- 181 (1075)
T ss_pred HHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHH-
Confidence 334455555 24566777888888888777665 2345555554443332222222111111100000000011111
Q ss_pred HHHHHHhhc--cccccchhhHhhhhHHHHHHhh-cCChhhHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHHHHhh----
Q 000086 873 VLEAHLLSC--ADKERGSQERLIEPLMSLVKSY-EGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQY---- 945 (2304)
Q Consensus 873 ~~~~~~~~~--~~~~~~~~~~~~~pl~~~~~~~-~~G~~~~~~~~~~~ll~~y~~ve~~f~~~~~~~~i~~lr~~~---- 945 (2304)
.+-.|+..+ +..++..|..++-.++.+++.. ..|-...++.+ ..+|.+++..+--|=+...+++|+-.-.-.
T Consensus 182 A~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~-l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~ 260 (1075)
T KOG2171|consen 182 ALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSA-LEALIELLESEPKLLRPHLSQIIQFSLEIAKNKE 260 (1075)
T ss_pred HHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccc
Confidence 223333333 2445555555555577777765 33433223333 344555554444333334444443322211
Q ss_pred hhhHHH--HHHHH-----------HhcccchhhhHHHHHHHHHhc--------CC----------CChh-HHHHHHHHH-
Q 000086 946 KKDLLK--VVDIV-----------LSHQGVKRKNKLILRLMEQLV--------YP----------NPAA-YRDKLIRFS- 992 (2304)
Q Consensus 946 ~~~~~~--v~~~~-----------~sh~~~~~k~~lv~~ll~~~~--------~~----------~~~~-~~~~L~~l~- 992 (2304)
.+|..+ .++.+ ..++. -...|+..+|..+. .+ .|.. -..+|++|+
T Consensus 261 l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~--~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~ 338 (1075)
T KOG2171|consen 261 LENSIRHLALEFLVSLSEYAPAMCKKLAL--LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLAL 338 (1075)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHhhhchh--hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHh
Confidence 112111 11111 11221 22344555554332 00 0111 345777776
Q ss_pred hccCCCchHHHHHHHHHHHHhccchhHHHHHHHHHHhhhccccCCCCCCCcCccchHHHHHHhhcCCchhHHhhhhhcCC
Q 000086 993 ALNHTNYSELALKASQLLEQTKLSELRSSIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDH 1072 (2304)
Q Consensus 993 ~l~~~~~~~val~Ar~~l~~~~~ps~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~~~~d~L~~~f~~ 1072 (2304)
.|.++.--.+...+-+.+. +-+....|++-+..+-...+ -|.+.|...++ .|++....++.+
T Consensus 339 ~L~g~~v~p~~~~~l~~~l--~S~~w~~R~AaL~Als~i~E-------------Gc~~~m~~~l~---~Il~~Vl~~l~D 400 (1075)
T KOG2171|consen 339 HLGGKQVLPPLFEALEAML--QSTEWKERHAALLALSVIAE-------------GCSDVMIGNLP---KILPIVLNGLND 400 (1075)
T ss_pred cCChhhehHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHc-------------ccHHHHHHHHH---HHHHHHHhhcCC
Confidence 4544443344444444444 34677888887766554332 24455665444 678888899999
Q ss_pred CCHHHHHHHHHH
Q 000086 1073 SDHTLQRRVVET 1084 (2304)
Q Consensus 1073 ~~~~~~~~alev 1084 (2304)
+.|.||.||+-.
T Consensus 401 phprVr~AA~na 412 (1075)
T KOG2171|consen 401 PHPRVRYAALNA 412 (1075)
T ss_pred CCHHHHHHHHHH
Confidence 999999999765
No 480
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=66.66 E-value=2e+02 Score=40.50 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=58.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC--CCCCCchhh-hh---------hhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW--RGFSGGQRD-LF---------EGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~--~Gf~~G~~~-e~---------~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
..++++......++++.++. ..+-.|+|.-. ..|+.|..= +. ....+....++.++..+.+|+|+.|
T Consensus 29 Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV 108 (708)
T PRK11154 29 NTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAI 108 (708)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 47889999999999998875 45666776543 348777642 11 1112234457788999999999999
Q ss_pred cCCCcCCchhhhhcccccCCccceeecccC
Q 000086 2046 PMMAELRGGAWVVVDSRINSDHIEMYADRT 2075 (2304)
Q Consensus 2046 ~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~ 2075 (2304)
- |-+.+||.-+++.+ |+ .+|.++
T Consensus 109 ~-G~a~GgG~~Lalac----D~--ria~~~ 131 (708)
T PRK11154 109 H-GACLGGGLELALAC----HY--RVCTDD 131 (708)
T ss_pred C-CeeechHHHHHHhC----CE--EEEeCC
Confidence 8 34445555555543 44 455443
No 481
>PRK04148 hypothetical protein; Provisional
Probab=66.66 E-value=13 Score=41.16 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=61.1
Q ss_pred hHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEE-------EEEeccCCCCC-ChhhhhccEE
Q 000086 34 EVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLV-------AMATPEDMRIN-AEHIRIADQF 105 (2304)
Q Consensus 34 ~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v-------~vat~~D~~~~-a~~ir~ADe~ 105 (2304)
.+.+|+.++-+...-+|+|++|-| .+..+.+.+.++|+++++.+..-..| .-+...|.-.. -..-+-||-.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEE
Confidence 355666665544434789999999 77777888889999987544221100 01111233322 2233445655
Q ss_pred EEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCC
Q 000086 106 VEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWG 140 (2304)
Q Consensus 106 v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G 140 (2304)
+.+-+.. .. ...|+++|++.++|.++--.+
T Consensus 82 ysirpp~---el--~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 82 YSIRPPR---DL--QPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred EEeCCCH---HH--HHHHHHHHHHcCCCEEEEcCC
Confidence 5554322 22 567999999999999885533
No 482
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=66.30 E-value=22 Score=46.22 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=30.2
Q ss_pred cCCCCCeeeeCCCceeEEE-------EccCCCEEccCCcEEE
Q 000086 683 NDHDPSKLVAETPCKLLRY-------LVSDGSHIDADTPYAE 717 (2304)
Q Consensus 683 ~~~dp~~l~APmPGkvv~~-------~V~~Gd~V~~G~~l~~ 717 (2304)
+...|..|.|-..|.|.++ +|++||.|++||+|+.
T Consensus 185 ~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 185 DKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred cCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 3456889999999999996 7889999999999863
No 483
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=66.20 E-value=6.4 Score=54.72 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecC--cceEec-----------ChHHHHHhhc----ccccccccccCcceeec
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLD--QPIILT-----------GFSALNKLLG----REVYSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~--~~i~lt-----------G~~al~~~lG----~~vy~s~~~lGG~~i~~ 1842 (2304)
.|+|+.|.|.|+|||..++..||++|+.++ +.+++. |...+-..+| .++.-+...+.+.+ ..
T Consensus 97 kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~e-A~ 175 (699)
T TIGR02440 97 IPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQ-AL 175 (699)
T ss_pred CCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHH-HH
Q ss_pred ccCceEEEecCcHHHHHHHHHHH
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
..|++|.+++++ +..+.+++|.
T Consensus 176 ~~GLV~~vv~~~-~l~~~a~~~A 197 (699)
T TIGR02440 176 KLGLVDDVVPQS-ILLDTAVEMA 197 (699)
T ss_pred hCCCCcEecChh-HHHHHHHHHH
No 484
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=65.69 E-value=55 Score=40.83 Aligned_cols=95 Identities=15% Similarity=0.073 Sum_probs=58.2
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh-h---hh------------------------H---HH
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F---EG------------------------I---LQ 2025 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e-~---~g------------------------i---lk 2025 (2304)
.+++++-.....++++.++. ..+=+|+|.-.. .|+.|..=. . .. . ..
T Consensus 26 Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (288)
T PRK08290 26 NAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWE 105 (288)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccchhhHHHHHHH
Confidence 57888999999999998765 567777775433 366655311 0 00 0 01
Q ss_pred HHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2026 AGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2026 ~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
....++..+..+.+|+|+.|- |...+||.-+++. .|+ ++|.++++++.
T Consensus 106 ~~~~~~~~l~~~pkPvIAaVn-G~a~GgG~~lala----cD~--ria~e~a~f~~ 153 (288)
T PRK08290 106 VYLGMCRRWRDLPKPTIAQVQ-GACIAGGLMLAWV----CDL--IVASDDAFFSD 153 (288)
T ss_pred HHHHHHHHHHhCCCCEEEEEC-CEeeHHHHHHHHh----CCE--EEeeCCCEecC
Confidence 112344567889999999998 3344445544544 366 67776666554
No 485
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=65.63 E-value=7.9 Score=50.22 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=36.3
Q ss_pred CcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 713 TPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 713 ~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
.....+++.. +..|.++.+|+|..+ +++|+.|.+||+|++|+..
T Consensus 55 ~~~G~v~a~~-~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 55 ELPGRTSAYR-IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EEEEEEEEEE-EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCH
Confidence 3445566633 678999999999999 9999999999999999653
No 486
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=65.34 E-value=5.9 Score=46.72 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=35.9
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChH
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1818 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~ 1818 (2304)
.|+++++.|.|.|+|.+++..||++++.+.+.++..|..
T Consensus 67 kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~ 105 (208)
T cd07023 67 KPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVI 105 (208)
T ss_pred CcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEE
Confidence 599999999999999999999999999999988888863
No 487
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=65.13 E-value=5.4 Score=49.51 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=29.9
Q ss_pred ceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 724 CMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 724 ~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
+..|.||.+|+|..+ +++|+.|.+||+|++|+.
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~ 59 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDD 59 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECC
Confidence 457899999999998 999999999999999854
No 488
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=64.80 E-value=4.9 Score=51.84 Aligned_cols=34 Identities=18% Similarity=0.029 Sum_probs=31.2
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceE
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII 1813 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ 1813 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.
T Consensus 106 kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~ 139 (379)
T PLN02874 106 KTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFA 139 (379)
T ss_pred CCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEe
Confidence 6999999999999999999999999999886543
No 489
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=64.68 E-value=7.6 Score=50.25 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=31.5
Q ss_pred ccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 722 KMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 722 Km~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
+-...|.+|.+|+|..+ |++|+.|++|++|++++..+
T Consensus 41 ~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 41 GNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD 78 (423)
T ss_pred CCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence 33445779999999999 99999999999999997653
No 490
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=64.57 E-value=1.1e+02 Score=37.27 Aligned_cols=95 Identities=21% Similarity=0.170 Sum_probs=55.7
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh--hh-HHHHHHHHHHH--HHcCCCCEEEEEcCCCcC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--EG-ILQAGSTIVEN--LRTYKQPVFVYIPMMAEL 2051 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~--~g-ilk~ga~iv~a--l~~~~vP~i~~I~~~ge~ 2051 (2304)
..+.+.-.....++++.++. ..+-+|+|.-.+ .|+.|.+-.. .. -...-...+.. ...+.+|+|+.|- |...
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~-G~a~ 103 (254)
T PRK08252 25 NAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVE-GYAL 103 (254)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEEC-CEEe
Confidence 47888999999999998865 567777776543 3777753211 00 00000111111 1367899999988 3344
Q ss_pred CchhhhhcccccCCccceeecccCcEEEe
Q 000086 2052 RGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2052 ~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+||.-+++.+ |+ .+|.++++++.
T Consensus 104 GgG~~lalac----D~--~ia~~~a~f~~ 126 (254)
T PRK08252 104 AGGFELALAC----DL--IVAARDAKFGL 126 (254)
T ss_pred hHHHHHHHhC----CE--EEEeCCCEEeC
Confidence 4455555543 65 66776666654
No 491
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=63.67 E-value=6.1 Score=41.03 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=28.0
Q ss_pred CCCccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 489 SDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 489 ~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
..+++--|++.|+|.+||+++++.+++.+.+.|
T Consensus 49 ~GGRvl~v~~~g~tl~eA~~~ay~~i~~I~~~g 81 (93)
T PF02843_consen 49 NGGRVLTVVALGDTLEEAREKAYEAIEKIDFPG 81 (93)
T ss_dssp -SSEEEEEEEEESSHHHHHHHHHHHHTTSB-TT
T ss_pred cCCeEEEEEEEcCCHHHHHHHHHHHHhccCCCC
Confidence 345577799999999999999999999999987
No 492
>PRK08321 naphthoate synthase; Validated
Probab=63.09 E-value=1.9e+02 Score=36.52 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=61.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--------CCCCchhhhh--------------h--hHHHH----HHH
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--------GFSGGQRDLF--------------E--GILQA----GST 2029 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--------Gf~~G~~~e~--------------~--gilk~----ga~ 2029 (2304)
..+.++...-..++++.++. ..+-+|+|.-.. .|+.|.+-.. . ...+. ...
T Consensus 47 Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (302)
T PRK08321 47 NAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILE 126 (302)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHH
Confidence 57889999999999998865 567777776542 4777764211 0 00011 112
Q ss_pred HHHHHHcCCCCEEEEEcCCCcCCc-hhhhhcccccCCccceeecc-cCcEEEeeC
Q 000086 2030 IVENLRTYKQPVFVYIPMMAELRG-GAWVVVDSRINSDHIEMYAD-RTAKGNVLE 2082 (2304)
Q Consensus 2030 iv~al~~~~vP~i~~I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~-p~A~~gvl~ 2082 (2304)
+...+..+.+|+|+.|- |-+.| |.-+++. .|+ ++|. ++++++..+
T Consensus 127 ~~~~l~~~pkP~IAaV~--G~a~GgG~~lala----cD~--ria~~~~a~f~~pe 173 (302)
T PRK08321 127 VQRLIRFMPKVVIAVVP--GWAAGGGHSLHVV----CDL--TLASREHARFKQTD 173 (302)
T ss_pred HHHHHHcCCCCEEEEEc--CeeehHHHHHHHh----CCE--EEEecCCCEEECCc
Confidence 44567788999999998 55555 5444444 366 7776 577776643
No 493
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=62.73 E-value=13 Score=48.51 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=34.8
Q ss_pred ccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc
Q 000086 682 QNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2304)
Q Consensus 682 ~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM 721 (2304)
+.+.-...+.||..|+|.++++++|+.|+.|++++.||..
T Consensus 38 EtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 38 ETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred EEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 3344456799999999999999999999999999999854
No 494
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=62.31 E-value=16 Score=47.17 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=77.0
Q ss_pred ccEEEEECchHHHHHHHHHHHHcC-CcccccccceeEEEEEeccCCCCCChhhhhccE------EEEccCCCCCCCccCH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWA-YETFGTEKAILLVAMATPEDMRINAEHIRIADQ------FVEVPGGTNNNNYANV 120 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~G-y~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe------~v~vp~~~~~~sY~dv 120 (2304)
|++|||+|.|..|..+++.|.+.| +++. .+ |.. ....-+.++. +..+ +-.|.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~-----------iA--dRs-~~~~~~i~~~~~~~v~~~~v-------D~~d~ 59 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVT-----------IA--DRS-KEKCARIAELIGGKVEALQV-------DAADV 59 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEE-----------EE--eCC-HHHHHHHHhhccccceeEEe-------cccCh
Confidence 579999999999999999988887 5553 22 211 1222222222 4444 33678
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCC
Q 000086 121 QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSG 192 (2304)
Q Consensus 121 d~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~ 192 (2304)
+++.++.+.. |+|+..-.. .-+..+.++|.+.|+.++-.+... -+.+.....++++|+-..+-.+
T Consensus 60 ~al~~li~~~--d~VIn~~p~-~~~~~i~ka~i~~gv~yvDts~~~----~~~~~~~~~a~~Agit~v~~~G 124 (389)
T COG1748 60 DALVALIKDF--DLVINAAPP-FVDLTILKACIKTGVDYVDTSYYE----EPPWKLDEEAKKAGITAVLGCG 124 (389)
T ss_pred HHHHHHHhcC--CEEEEeCCc-hhhHHHHHHHHHhCCCEEEcccCC----chhhhhhHHHHHcCeEEEcccC
Confidence 8999999888 888743221 122347789999999887322211 1147788899999999888665
No 495
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=62.23 E-value=7.9 Score=48.87 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=32.5
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM 721 (2304)
+...|+||..|.|..+.+.+|+.|.+|++++.|-.+
T Consensus 202 ~~~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~ 237 (331)
T PRK03598 202 QDTELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT 237 (331)
T ss_pred hcCEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence 457899999999999999999999999999998543
No 496
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=61.97 E-value=10 Score=52.98 Aligned_cols=87 Identities=18% Similarity=0.119 Sum_probs=57.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCc--ce-------Ee----cChHHHHHhhcccc----cccccccCcceee
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQ--PI-------IL----TGFSALNKLLGREV----YSSHMQLGGPKIM 1841 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~--~i-------~l----tG~~al~~~lG~~v----y~s~~~lGG~~i~ 1841 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++ .+ ++ .|..-+-+.+|... .-+.+.+.+.+ .
T Consensus 101 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~e-A 179 (708)
T PRK11154 101 PIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQ-A 179 (708)
T ss_pred CCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHH-H
Confidence 36999999999999999999999999999874 33 22 12233434444321 11222233222 3
Q ss_pred cccCceEEEecCcHHHHHHHHHHHhc
Q 000086 1842 ATNGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1842 ~~nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
..-|++|.++++ .+..+.+++|..-
T Consensus 180 ~~~GLv~~vv~~-~~l~~~a~~~A~~ 204 (708)
T PRK11154 180 LKLGLVDDVVPH-SILLEVAVELAKK 204 (708)
T ss_pred HHCCCCcEecCh-HHHHHHHHHHHHh
Confidence 479999999964 4566777777654
No 497
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=61.58 E-value=10 Score=49.55 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=31.5
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
-+.|+||..|.|....+.+|+.|.+|++++.|..
T Consensus 253 ~~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~ 286 (421)
T TIGR03794 253 NTRIVSQHSGRVIELNYTPGQLVAAGAPLASLEV 286 (421)
T ss_pred CCeEEcCCCeEEEEeeCCCCCEecCCCcEEEEEc
Confidence 4789999999999999999999999999999953
No 498
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=61.09 E-value=9.9 Score=35.49 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=28.5
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEE
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~i 718 (2304)
..+.+|..|++..+.+++|+.|..|++++.|
T Consensus 44 ~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 44 VEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 4689999999999999999999999999864
No 499
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=61.04 E-value=6.5 Score=51.57 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=35.5
Q ss_pred EEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEee
Q 000086 699 LRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKM 739 (2304)
Q Consensus 699 v~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i~ 739 (2304)
...+|++||.|.+||+|..=|- -..++.||.+|+|..|.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 4578999999999999999987 78899999999999884
No 500
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=61.04 E-value=1.1e+02 Score=42.96 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=63.2
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh-hh-----------hhHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF-----------EGILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~-e~-----------~gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
.++..+......++++.++. ..+-+|+|.-.. .|+.|..- +. ....+....++.++..+..|+|+.
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 108 (715)
T PRK11730 29 NKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAA 108 (715)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 47888888999999998865 566777776543 47777532 11 112233456778889999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |...+||.-+++.+ |+ .+|.+++++|.
T Consensus 109 v~-G~a~GgG~~LAlac----D~--ria~~~a~f~~ 137 (715)
T PRK11730 109 IN-GYALGGGCECVLAT----DY--RVASPDARIGL 137 (715)
T ss_pred EC-CEeehHHHHHHHhC----CE--EEEcCCCEEeC
Confidence 98 34444455555543 66 67777777666
Done!